Query 037510
Match_columns 806
No_of_seqs 769 out of 4379
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 22:30:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9E-40 3.1E-44 365.8 43.7 494 133-653 64-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 7.7E-40 2.6E-44 366.4 40.7 522 202-803 63-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-26 5.7E-31 242.7 46.0 318 404-772 68-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.8E-26 9.4E-31 241.1 47.6 383 128-522 5-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.3E-28 4.5E-33 261.5 24.7 205 570-805 8-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.5E-28 5.1E-33 261.1 23.8 185 195-380 29-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 1E-23 3.5E-28 231.0 39.4 453 262-796 6-485 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.4E-23 1.1E-27 226.8 41.4 458 226-758 5-482 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.3E-21 7.8E-26 208.2 39.9 338 317-730 11-370 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.5E-21 5E-26 215.1 37.8 451 227-758 25-495 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 3.7E-21 1.3E-25 206.6 40.0 330 279-652 9-359 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.5E-21 5.2E-26 214.9 37.1 436 262-794 25-496 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 2.4E-17 8.3E-22 184.4 63.0 643 33-786 511-1308(1630)
14 1xi4_A Clathrin heavy chain; a 99.9 1.8E-16 6.2E-21 177.5 65.6 576 119-779 982-1584(1630)
15 3ieg_A DNAJ homolog subfamily 99.9 1.4E-18 4.8E-23 180.1 38.9 327 405-795 5-341 (359)
16 2xm6_A Protein corresponding t 99.9 3.3E-17 1.1E-21 177.0 49.1 382 332-785 38-465 (490)
17 3ieg_A DNAJ homolog subfamily 99.8 1.2E-17 4.1E-22 173.1 39.1 331 156-519 2-351 (359)
18 2xm6_A Protein corresponding t 99.8 2E-16 7E-21 170.9 49.8 366 352-790 26-435 (490)
19 3hym_B Cell division cycle pro 99.8 6.4E-18 2.2E-22 172.8 31.2 299 436-775 20-322 (330)
20 3hym_B Cell division cycle pro 99.8 2.9E-17 9.9E-22 167.9 32.5 287 229-523 24-320 (330)
21 2ooe_A Cleavage stimulation fa 99.8 6.7E-16 2.3E-20 168.6 44.9 429 250-751 2-491 (530)
22 2ooe_A Cleavage stimulation fa 99.8 7.5E-16 2.6E-20 168.2 43.4 431 285-791 2-494 (530)
23 1fch_A Peroxisomal targeting s 99.8 8.2E-18 2.8E-22 175.0 24.5 305 412-784 34-356 (368)
24 1fch_A Peroxisomal targeting s 99.8 3.9E-17 1.3E-21 169.8 26.7 305 132-462 35-354 (368)
25 4eqf_A PEX5-related protein; a 99.8 3.2E-17 1.1E-21 170.2 24.9 262 440-783 67-352 (365)
26 1b89_A Protein (clathrin heavy 99.8 9.5E-17 3.2E-21 161.5 24.9 347 239-648 15-369 (449)
27 4eqf_A PEX5-related protein; a 99.8 1.7E-16 5.9E-21 164.7 27.1 274 402-748 64-352 (365)
28 1b89_A Protein (clathrin heavy 99.8 3.1E-16 1E-20 157.8 27.5 240 134-416 15-254 (449)
29 4g1t_A Interferon-induced prot 99.7 2.8E-15 9.7E-20 161.6 35.3 396 330-796 48-469 (472)
30 3cv0_A Peroxisome targeting si 99.7 4.6E-16 1.6E-20 158.7 26.7 277 440-785 23-313 (327)
31 3mkr_A Coatomer subunit epsilo 99.7 6.5E-16 2.2E-20 153.2 26.9 275 129-423 6-285 (291)
32 3mkr_A Coatomer subunit epsilo 99.7 6.5E-16 2.2E-20 153.1 26.6 196 551-786 64-263 (291)
33 4g1t_A Interferon-induced prot 99.7 2.7E-15 9.3E-20 161.8 33.4 345 334-753 95-460 (472)
34 3cv0_A Peroxisome targeting si 99.7 8.6E-16 2.9E-20 156.7 25.4 233 157-396 21-268 (327)
35 3spa_A Mtrpol, DNA-directed RN 99.7 9.5E-18 3.2E-22 181.9 11.1 119 687-805 126-248 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 9.3E-18 3.2E-22 182.0 8.6 151 156-312 126-286 (1134)
37 3uq3_A Heat shock protein STI1 99.7 1.5E-14 5.3E-19 141.6 24.2 238 508-801 5-254 (258)
38 2pl2_A Hypothetical conserved 99.7 1.1E-14 3.9E-19 137.6 21.4 200 549-786 2-213 (217)
39 3e4b_A ALGK; tetratricopeptide 99.6 4.6E-14 1.6E-18 149.7 27.6 313 305-652 10-352 (452)
40 3e4b_A ALGK; tetratricopeptide 99.6 3.9E-14 1.3E-18 150.2 26.1 377 127-534 8-418 (452)
41 3uq3_A Heat shock protein STI1 99.6 4.7E-14 1.6E-18 138.1 23.3 226 473-751 5-235 (258)
42 2ho1_A Type 4 fimbrial biogene 99.6 2.3E-13 7.8E-18 132.6 25.6 213 552-801 37-250 (252)
43 3u4t_A TPR repeat-containing p 99.6 1.3E-13 4.3E-18 136.3 23.5 245 509-800 4-261 (272)
44 1ouv_A Conserved hypothetical 99.6 2.1E-12 7.2E-17 127.4 31.9 230 506-795 4-257 (273)
45 2pl2_A Hypothetical conserved 99.6 1.5E-13 5.2E-18 129.9 22.2 196 121-323 4-210 (217)
46 2vq2_A PILW, putative fimbrial 99.6 3.6E-13 1.2E-17 128.6 24.9 215 551-801 7-223 (225)
47 1ouv_A Conserved hypothetical 99.6 3.9E-12 1.3E-16 125.5 32.2 223 473-753 6-252 (273)
48 2h6f_A Protein farnesyltransfe 99.6 2.6E-13 8.8E-18 139.0 24.2 244 508-802 97-362 (382)
49 3u4t_A TPR repeat-containing p 99.6 4.7E-13 1.6E-17 132.2 24.5 236 122-362 3-250 (272)
50 2h6f_A Protein farnesyltransfe 99.6 1E-12 3.4E-17 134.6 27.2 248 122-378 97-363 (382)
51 2q7f_A YRRB protein; TPR, prot 99.6 2.2E-13 7.7E-18 131.9 20.0 212 550-800 21-233 (243)
52 3vtx_A MAMA; tetratricopeptide 99.5 5.3E-13 1.8E-17 122.8 19.8 172 586-796 4-177 (184)
53 4e6h_A MRNA 3'-END-processing 99.5 6.3E-10 2.2E-14 121.6 46.9 244 456-735 327-586 (679)
54 1xnf_A Lipoprotein NLPI; TPR, 99.5 6E-13 2E-17 131.6 20.5 247 134-391 17-269 (275)
55 4a1s_A PINS, partner of inscut 99.5 2.4E-13 8.1E-18 143.5 18.6 278 475-786 50-371 (411)
56 1xnf_A Lipoprotein NLPI; TPR, 99.5 6.8E-13 2.3E-17 131.2 20.5 83 451-534 18-103 (275)
57 2ho1_A Type 4 fimbrial biogene 99.5 6.8E-12 2.3E-16 122.1 26.7 200 157-361 37-237 (252)
58 2vq2_A PILW, putative fimbrial 99.5 5.8E-12 2E-16 120.1 25.1 199 157-359 8-208 (225)
59 4e6h_A MRNA 3'-END-processing 99.5 5.5E-10 1.9E-14 122.1 43.5 232 386-632 327-584 (679)
60 3sf4_A G-protein-signaling mod 99.5 8.9E-13 3E-17 138.9 20.5 283 472-786 8-335 (406)
61 2q7f_A YRRB protein; TPR, prot 99.5 1.8E-12 6E-17 125.5 20.9 203 120-328 21-223 (243)
62 3sf4_A G-protein-signaling mod 99.5 5.5E-13 1.9E-17 140.5 18.2 306 438-775 9-364 (406)
63 3ro2_A PINS homolog, G-protein 99.5 9.7E-13 3.3E-17 134.5 19.4 279 476-786 8-331 (338)
64 4a1s_A PINS, partner of inscut 99.5 1.6E-12 5.4E-17 137.2 20.1 280 440-751 50-371 (411)
65 3vtx_A MAMA; tetratricopeptide 99.5 7.6E-12 2.6E-16 114.9 20.8 171 550-758 3-174 (184)
66 3ro2_A PINS homolog, G-protein 99.4 7.1E-12 2.4E-16 128.0 20.9 278 442-751 9-331 (338)
67 4abn_A Tetratricopeptide repea 99.4 3.7E-12 1.3E-16 135.9 18.6 196 549-783 99-317 (474)
68 3ulq_A Response regulator aspa 99.4 1.4E-11 4.8E-16 128.3 22.3 235 514-786 109-367 (383)
69 3ulq_A Response regulator aspa 99.4 4.3E-11 1.5E-15 124.6 25.4 238 479-751 109-367 (383)
70 2ond_A Cleavage stimulation fa 99.4 2.2E-10 7.6E-15 114.8 28.7 218 490-752 33-270 (308)
71 3nf1_A KLC 1, kinesin light ch 99.4 7.3E-12 2.5E-16 126.3 17.4 213 550-786 25-306 (311)
72 4i17_A Hypothetical protein; T 99.4 2.8E-11 9.4E-16 115.6 20.0 209 550-803 5-223 (228)
73 4gyw_A UDP-N-acetylglucosamine 99.4 1.3E-11 4.6E-16 136.6 19.3 163 587-786 9-173 (723)
74 4abn_A Tetratricopeptide repea 99.4 1.5E-11 5.1E-16 131.2 19.0 216 489-749 84-318 (474)
75 2ond_A Cleavage stimulation fa 99.4 2.1E-10 7E-15 115.1 25.7 216 139-361 33-269 (308)
76 3nf1_A KLC 1, kinesin light ch 99.3 6.3E-12 2.1E-16 126.8 13.5 168 122-289 27-222 (311)
77 3q15_A PSP28, response regulat 99.3 4.5E-10 1.5E-14 116.5 25.4 240 512-786 105-364 (378)
78 1hz4_A MALT regulatory protein 99.3 1E-09 3.4E-14 113.8 27.8 236 124-359 16-279 (373)
79 1hz4_A MALT regulatory protein 99.3 1E-09 3.4E-14 113.8 27.7 275 479-786 20-321 (373)
80 4i17_A Hypothetical protein; T 99.3 2.5E-10 8.7E-15 108.9 21.3 172 550-758 40-213 (228)
81 3as5_A MAMA; tetratricopeptide 99.3 3.9E-11 1.3E-15 110.2 14.9 162 589-786 10-172 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.3 1E-10 3.5E-15 129.5 19.8 165 551-751 8-173 (723)
83 3q15_A PSP28, response regulat 99.3 7.9E-10 2.7E-14 114.6 25.0 163 233-396 107-289 (378)
84 3edt_B KLC 2, kinesin light ch 99.2 1.5E-10 5E-15 114.8 15.3 177 586-786 42-280 (283)
85 3as5_A MAMA; tetratricopeptide 99.2 2.1E-09 7.1E-14 98.5 21.0 165 123-291 9-173 (186)
86 3urz_A Uncharacterized protein 99.2 4.4E-10 1.5E-14 105.1 14.9 136 627-800 59-197 (208)
87 1qqe_A Vesicular transport pro 99.1 1E-09 3.5E-14 108.9 16.5 241 491-793 3-273 (292)
88 3rjv_A Putative SEL1 repeat pr 99.1 6.1E-09 2.1E-13 97.5 20.6 179 569-792 3-202 (212)
89 3mv2_B Coatomer subunit epsilo 99.1 2.3E-08 7.7E-13 96.5 24.4 189 571-794 85-287 (310)
90 3qky_A Outer membrane assembly 99.1 2.7E-09 9.4E-14 104.0 18.0 173 586-794 14-229 (261)
91 4ga2_A E3 SUMO-protein ligase 99.1 2.5E-10 8.5E-15 100.2 8.5 142 595-773 5-149 (150)
92 3edt_B KLC 2, kinesin light ch 99.1 1.5E-09 5.2E-14 107.4 15.2 158 133-290 12-197 (283)
93 3urz_A Uncharacterized protein 99.1 3.4E-09 1.2E-13 99.0 16.5 173 554-765 6-197 (208)
94 3mv2_B Coatomer subunit epsilo 99.1 7.9E-08 2.7E-12 92.7 26.2 202 492-751 85-304 (310)
95 3qky_A Outer membrane assembly 99.1 5E-09 1.7E-13 102.2 17.6 206 550-776 13-250 (261)
96 2fo7_A Synthetic consensus TPR 99.0 6E-09 2.1E-13 89.5 15.9 128 624-786 3-131 (136)
97 2pzi_A Probable serine/threoni 99.0 2.2E-09 7.5E-14 119.9 15.6 172 563-773 402-583 (681)
98 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.8E-08 6.3E-13 95.4 19.0 89 695-787 103-213 (225)
99 1qqe_A Vesicular transport pro 99.0 1.7E-08 5.7E-13 100.1 19.3 61 125-185 40-105 (292)
100 2fo7_A Synthetic consensus TPR 99.0 1.6E-08 5.5E-13 86.8 16.2 128 589-751 3-131 (136)
101 4ga2_A E3 SUMO-protein ligase 99.0 7.8E-10 2.7E-14 97.0 7.3 130 628-795 3-135 (150)
102 3qou_A Protein YBBN; thioredox 98.9 1.7E-08 5.7E-13 99.6 16.9 166 584-786 114-283 (287)
103 2r5s_A Uncharacterized protein 98.9 8.1E-09 2.8E-13 93.5 13.0 159 590-786 9-172 (176)
104 2vsy_A XCC0866; transferase, g 98.9 1.2E-08 4.2E-13 112.0 16.5 152 565-752 2-157 (568)
105 2pzi_A Probable serine/threoni 98.9 7.3E-09 2.5E-13 115.7 14.6 156 598-793 402-567 (681)
106 2yhc_A BAMD, UPF0169 lipoprote 98.9 8.6E-08 2.9E-12 90.8 19.3 185 552-753 4-214 (225)
107 3gyz_A Chaperone protein IPGC; 98.9 6.3E-09 2.1E-13 90.5 10.4 102 687-794 35-138 (151)
108 3rjv_A Putative SEL1 repeat pr 98.9 1.8E-07 6.1E-12 87.4 21.0 165 550-753 16-198 (212)
109 2uy1_A Cleavage stimulation fa 98.9 1.5E-06 5.3E-11 92.2 30.7 388 134-615 6-412 (493)
110 4gco_A Protein STI-1; structur 98.9 2E-08 6.9E-13 84.6 12.7 108 688-801 13-122 (126)
111 3dra_A Protein farnesyltransfe 98.9 5.6E-07 1.9E-11 88.0 24.4 222 524-793 49-292 (306)
112 2uy1_A Cleavage stimulation fa 98.9 4.8E-06 1.6E-10 88.4 33.3 358 136-536 28-412 (493)
113 2r5s_A Uncharacterized protein 98.9 2.3E-08 7.9E-13 90.5 13.3 161 125-289 9-171 (176)
114 2ifu_A Gamma-SNAP; membrane fu 98.9 3.3E-08 1.1E-12 98.8 15.1 189 561-780 45-254 (307)
115 3dra_A Protein farnesyltransfe 98.8 1.5E-06 5.3E-11 84.8 26.2 222 134-361 45-286 (306)
116 4gco_A Protein STI-1; structur 98.8 4.4E-08 1.5E-12 82.5 12.7 112 619-766 9-123 (126)
117 3gyz_A Chaperone protein IPGC; 98.8 1E-07 3.4E-12 82.8 14.7 103 621-759 35-138 (151)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.4E-07 4.8E-12 88.5 17.0 125 625-786 9-149 (213)
119 2qfc_A PLCR protein; TPR, HTH, 98.8 4.6E-07 1.6E-11 89.8 21.4 171 589-785 77-264 (293)
120 2ifu_A Gamma-SNAP; membrane fu 98.8 4.3E-08 1.5E-12 97.9 14.0 192 565-785 4-222 (307)
121 2vsy_A XCC0866; transferase, g 98.8 8.5E-08 2.9E-12 105.3 16.9 149 601-786 3-156 (568)
122 4gcn_A Protein STI-1; structur 98.8 4.3E-08 1.5E-12 82.8 10.8 106 688-799 8-122 (127)
123 3qou_A Protein YBBN; thioredox 98.8 1.8E-07 6E-12 92.3 16.6 162 158-323 118-280 (287)
124 2vgx_A Chaperone SYCD; alterna 98.8 2E-08 6.7E-13 87.6 8.5 96 687-786 20-117 (148)
125 3u3w_A Transcriptional activat 98.8 2.2E-06 7.4E-11 84.9 24.6 168 593-786 81-265 (293)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.5E-07 8.5E-12 86.8 16.7 124 592-751 11-149 (213)
127 2e2e_A Formate-dependent nitri 98.7 4.5E-08 1.5E-12 88.7 10.2 133 633-803 21-158 (177)
128 4f3v_A ESX-1 secretion system 98.7 2.4E-07 8.1E-12 88.2 15.2 197 564-799 18-247 (282)
129 2qfc_A PLCR protein; TPR, HTH, 98.7 1.6E-06 5.5E-11 85.8 20.9 171 555-751 78-265 (293)
130 1a17_A Serine/threonine protei 98.7 3.4E-07 1.2E-11 81.7 14.4 129 622-786 13-145 (166)
131 2e2e_A Formate-dependent nitri 98.6 1.7E-07 5.7E-12 84.9 11.7 127 597-760 20-150 (177)
132 4gcn_A Protein STI-1; structur 98.6 2.3E-07 7.9E-12 78.3 11.4 106 622-763 8-121 (127)
133 3upv_A Heat shock protein STI1 98.6 2.3E-07 7.8E-12 78.4 11.4 108 688-801 4-119 (126)
134 2xcb_A PCRH, regulatory protei 98.6 1.9E-07 6.5E-12 80.8 10.4 103 687-795 17-121 (142)
135 2lni_A Stress-induced-phosphop 98.6 5.9E-07 2E-11 76.6 13.3 61 689-751 51-112 (133)
136 2vgx_A Chaperone SYCD; alterna 98.6 1.5E-07 5.2E-12 81.9 9.5 97 621-751 20-117 (148)
137 1a17_A Serine/threonine protei 98.6 1E-06 3.5E-11 78.5 15.2 129 588-751 14-145 (166)
138 3gw4_A Uncharacterized protein 98.6 5.8E-07 2E-11 83.4 14.0 160 599-785 4-174 (203)
139 1p5q_A FKBP52, FK506-binding p 98.6 4E-07 1.4E-11 91.9 13.7 163 601-785 127-292 (336)
140 3q7a_A Farnesyltransferase alp 98.6 2.2E-05 7.6E-10 77.4 24.9 176 132-313 64-257 (349)
141 3u3w_A Transcriptional activat 98.6 6.5E-06 2.2E-10 81.4 21.6 162 269-430 82-264 (293)
142 2vyi_A SGTA protein; chaperone 98.6 7.5E-07 2.6E-11 75.5 12.6 82 688-773 46-129 (131)
143 1na0_A Designed protein CTPR3; 98.5 1.3E-06 4.4E-11 73.3 13.6 94 690-786 11-105 (125)
144 3dss_A Geranylgeranyl transfer 98.5 2.6E-05 8.9E-10 76.6 23.8 227 519-796 40-311 (331)
145 1p5q_A FKBP52, FK506-binding p 98.5 1.2E-06 4.1E-11 88.4 14.7 131 587-751 147-293 (336)
146 3sz7_A HSC70 cochaperone (SGT) 98.5 4.8E-07 1.6E-11 80.6 10.5 102 687-794 10-113 (164)
147 1hxi_A PEX5, peroxisome target 98.5 4.1E-07 1.4E-11 75.9 9.1 98 690-793 19-118 (121)
148 2lni_A Stress-induced-phosphop 98.5 1.9E-06 6.6E-11 73.3 13.6 116 587-737 16-132 (133)
149 2dba_A Smooth muscle cell asso 98.5 2.3E-06 7.7E-11 74.5 14.3 110 686-801 26-140 (148)
150 1elw_A TPR1-domain of HOP; HOP 98.5 1.6E-06 5.4E-11 71.9 12.6 107 687-799 3-111 (118)
151 1na0_A Designed protein CTPR3; 98.5 3E-06 1E-10 71.0 14.5 62 688-751 43-105 (125)
152 2c2l_A CHIP, carboxy terminus 98.5 1.7E-06 5.8E-11 84.8 14.1 194 551-751 3-198 (281)
153 3upv_A Heat shock protein STI1 98.5 1.7E-06 5.8E-11 72.9 12.3 95 623-751 5-100 (126)
154 2vyi_A SGTA protein; chaperone 98.5 2.6E-06 8.9E-11 72.1 13.6 118 587-739 12-130 (131)
155 3q7a_A Farnesyltransferase alp 98.5 6.7E-05 2.3E-09 74.0 25.0 139 204-347 66-215 (349)
156 2xcb_A PCRH, regulatory protei 98.4 1.6E-06 5.5E-11 74.8 11.9 96 622-751 18-114 (142)
157 3q49_B STIP1 homology and U bo 98.4 1.3E-06 4.4E-11 75.0 11.1 98 685-786 6-105 (137)
158 2fbn_A 70 kDa peptidylprolyl i 98.4 1.7E-06 5.7E-11 79.9 12.5 168 599-788 16-187 (198)
159 4f3v_A ESX-1 secretion system 98.4 6.5E-06 2.2E-10 78.3 16.5 188 134-328 18-238 (282)
160 2kck_A TPR repeat; tetratricop 98.4 9.5E-07 3.2E-11 72.4 9.7 97 687-787 5-106 (112)
161 3dss_A Geranylgeranyl transfer 98.4 2.5E-05 8.4E-10 76.7 21.0 193 563-797 40-274 (331)
162 2c2l_A CHIP, carboxy terminus 98.4 1.4E-06 4.8E-11 85.4 12.2 97 157-255 4-100 (281)
163 3gw4_A Uncharacterized protein 98.4 2.9E-06 1E-10 78.6 13.8 157 133-290 3-175 (203)
164 2hr2_A Hypothetical protein; a 98.4 9.1E-07 3.1E-11 75.6 8.7 111 689-801 12-150 (159)
165 3sz7_A HSC70 cochaperone (SGT) 98.4 2.6E-06 8.7E-11 75.8 12.1 96 622-751 11-107 (164)
166 3rkv_A Putative peptidylprolyl 98.4 2.2E-06 7.5E-11 76.0 11.6 109 688-800 11-138 (162)
167 1elr_A TPR2A-domain of HOP; HO 98.4 2.2E-06 7.4E-11 72.6 11.1 110 688-801 4-120 (131)
168 3q49_B STIP1 homology and U bo 98.4 2.7E-06 9.1E-11 72.9 11.4 98 620-751 7-105 (137)
169 1elw_A TPR1-domain of HOP; HOP 98.4 6.6E-06 2.3E-10 68.0 13.3 95 623-751 5-100 (118)
170 2xev_A YBGF; tetratricopeptide 98.4 3.9E-06 1.3E-10 71.0 12.0 100 691-796 5-112 (129)
171 1hxi_A PEX5, peroxisome target 98.3 1.9E-06 6.6E-11 71.7 9.6 97 625-757 20-117 (121)
172 1elr_A TPR2A-domain of HOP; HO 98.3 2.6E-06 8.9E-11 72.1 10.4 111 622-768 4-122 (131)
173 3k9i_A BH0479 protein; putativ 98.3 1.2E-06 4.2E-11 72.6 7.2 103 700-804 2-108 (117)
174 2fbn_A 70 kDa peptidylprolyl i 98.3 7.7E-06 2.6E-10 75.4 12.9 129 589-751 40-185 (198)
175 2kck_A TPR repeat; tetratricop 98.3 5E-06 1.7E-10 68.0 10.4 95 623-751 7-105 (112)
176 3ro3_A PINS homolog, G-protein 98.3 4.7E-06 1.6E-10 73.7 10.6 138 623-786 10-157 (164)
177 2dba_A Smooth muscle cell asso 98.2 1.6E-05 5.5E-10 68.9 13.7 100 621-751 27-127 (148)
178 1wao_1 Serine/threonine protei 98.2 1.5E-06 5.1E-11 92.2 7.5 119 628-782 12-134 (477)
179 4b4t_Q 26S proteasome regulato 98.2 6.9E-05 2.4E-09 78.9 20.1 202 559-786 11-244 (434)
180 1dce_A Protein (RAB geranylger 98.2 4.2E-05 1.4E-09 82.6 17.9 175 564-776 40-244 (567)
181 1wao_1 Serine/threonine protei 98.2 6.6E-06 2.3E-10 87.2 11.5 119 594-747 13-134 (477)
182 2hr2_A Hypothetical protein; a 98.2 6.9E-06 2.4E-10 70.2 9.3 107 623-751 12-130 (159)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.1E-05 3.7E-10 85.2 13.0 143 622-785 268-413 (457)
184 1ihg_A Cyclophilin 40; ppiase 98.2 9.2E-06 3.2E-10 82.8 11.5 89 687-779 272-362 (370)
185 3rkv_A Putative peptidylprolyl 98.1 1.5E-05 5E-10 70.6 11.1 68 687-758 62-130 (162)
186 1zu2_A Mitochondrial import re 98.1 2E-06 6.7E-11 73.3 4.9 100 699-804 13-135 (158)
187 3ro3_A PINS homolog, G-protein 98.1 1.2E-05 4E-10 71.1 10.3 137 589-751 11-157 (164)
188 2xev_A YBGF; tetratricopeptide 98.1 4.9E-05 1.7E-09 64.0 13.4 100 626-758 6-109 (129)
189 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.4E-05 1.1E-09 81.5 14.7 130 588-751 269-414 (457)
190 2if4_A ATFKBP42; FKBP-like, al 98.1 5.3E-06 1.8E-10 83.6 8.1 97 690-792 232-331 (338)
191 4b4t_Q 26S proteasome regulato 98.1 0.00011 3.9E-09 77.3 18.6 126 129-254 11-162 (434)
192 1zu2_A Mitochondrial import re 98.0 7E-06 2.4E-10 70.0 6.7 113 633-787 13-147 (158)
193 2if4_A ATFKBP42; FKBP-like, al 98.0 1.4E-05 4.8E-10 80.5 9.9 94 624-751 232-327 (338)
194 1dce_A Protein (RAB geranylger 98.0 0.00012 4E-09 79.0 16.4 153 601-792 43-224 (567)
195 1ihg_A Cyclophilin 40; ppiase 98.0 4.5E-05 1.5E-09 77.7 12.5 121 590-744 226-362 (370)
196 2l6j_A TPR repeat-containing p 97.9 3.8E-06 1.3E-10 68.7 3.2 94 687-784 3-104 (111)
197 1klx_A Cysteine rich protein B 97.9 0.00015 5.1E-09 61.7 13.4 113 636-790 9-129 (138)
198 3k9i_A BH0479 protein; putativ 97.9 2.1E-05 7.1E-10 65.0 7.5 86 205-291 3-90 (117)
199 3n71_A Histone lysine methyltr 97.9 0.0001 3.4E-09 77.5 13.7 129 631-786 318-463 (490)
200 1klx_A Cysteine rich protein B 97.9 0.00032 1.1E-08 59.6 14.2 111 601-753 9-127 (138)
201 2kat_A Uncharacterized protein 97.8 9.9E-05 3.4E-09 60.6 9.1 77 706-786 3-81 (115)
202 1na3_A Designed protein CTPR2; 97.7 0.0001 3.6E-09 57.2 8.4 82 687-772 8-91 (91)
203 2kat_A Uncharacterized protein 97.7 8.2E-05 2.8E-09 61.1 7.9 63 687-751 18-81 (115)
204 2l6j_A TPR repeat-containing p 97.7 2.9E-05 9.9E-10 63.3 5.0 91 622-746 4-101 (111)
205 3n71_A Histone lysine methyltr 97.7 0.00015 5.3E-09 76.0 11.3 129 596-751 318-463 (490)
206 3ma5_A Tetratricopeptide repea 97.6 0.00014 4.9E-09 57.7 7.1 64 686-751 5-69 (100)
207 1na3_A Designed protein CTPR2; 97.5 0.00059 2E-08 52.8 9.4 81 622-736 9-90 (91)
208 3ma5_A Tetratricopeptide repea 97.4 0.00045 1.5E-08 54.8 7.9 81 720-802 3-86 (100)
209 3ly7_A Transcriptional activat 97.4 0.0018 6.1E-08 63.7 13.4 74 685-762 274-347 (372)
210 3ly7_A Transcriptional activat 97.4 0.0011 3.8E-08 65.2 11.9 73 722-798 276-348 (372)
211 3qww_A SET and MYND domain-con 97.3 0.0011 3.6E-08 68.5 10.8 87 700-786 310-410 (433)
212 3qww_A SET and MYND domain-con 97.2 0.0016 5.4E-08 67.2 10.5 64 688-751 340-410 (433)
213 3qwp_A SET and MYND domain-con 97.1 0.0023 7.9E-08 66.1 11.5 91 695-785 294-398 (429)
214 3bee_A Putative YFRE protein; 97.1 0.0034 1.2E-07 48.5 9.6 65 686-752 4-72 (93)
215 3lvg_A Clathrin heavy chain 1; 97.1 3.7E-07 1.3E-11 90.5 -16.5 118 121-253 53-170 (624)
216 1pc2_A Mitochondria fission pr 97.0 0.003 1E-07 53.1 9.1 83 707-793 17-104 (152)
217 3qwp_A SET and MYND domain-con 97.0 0.0051 1.7E-07 63.5 12.5 96 629-751 294-399 (429)
218 2kc7_A BFR218_protein; tetratr 96.9 0.00063 2.1E-08 53.7 4.2 81 694-786 6-89 (99)
219 3bee_A Putative YFRE protein; 96.9 0.0042 1.4E-07 47.9 8.6 78 721-802 4-85 (93)
220 2kc7_A BFR218_protein; tetratr 96.8 0.0012 4.1E-08 52.1 4.7 82 628-751 6-89 (99)
221 3lvg_A Clathrin heavy chain 1; 96.8 2.4E-06 8.2E-11 84.9 -13.7 119 402-533 198-316 (624)
222 3u64_A Protein TP_0956; tetrat 96.5 0.017 5.9E-07 54.2 10.6 91 704-798 179-282 (301)
223 3mkq_A Coatomer beta'-subunit; 96.3 0.15 5E-06 58.4 19.5 46 563-614 663-708 (814)
224 2v5f_A Prolyl 4-hydroxylase su 96.2 0.022 7.5E-07 45.1 8.6 70 687-758 4-79 (104)
225 3mkq_A Coatomer beta'-subunit; 96.1 0.12 4.1E-06 59.1 17.8 128 372-532 633-760 (814)
226 1pc2_A Mitochondria fission pr 95.9 0.074 2.5E-06 44.7 10.4 70 686-758 30-104 (152)
227 2v5f_A Prolyl 4-hydroxylase su 95.8 0.046 1.6E-06 43.2 8.9 69 726-796 8-82 (104)
228 3u64_A Protein TP_0956; tetrat 95.7 0.058 2E-06 50.7 10.0 108 638-785 179-296 (301)
229 1nzn_A CGI-135 protein, fissio 95.6 0.046 1.6E-06 44.1 7.9 85 705-793 18-107 (126)
230 3mkq_B Coatomer subunit alpha; 95.6 0.32 1.1E-05 42.0 13.5 100 631-782 14-113 (177)
231 3mkq_B Coatomer subunit alpha; 95.3 0.75 2.6E-05 39.7 14.8 103 560-714 13-115 (177)
232 1wy6_A Hypothetical protein ST 94.9 0.35 1.2E-05 38.9 10.7 64 194-258 93-156 (172)
233 1wy6_A Hypothetical protein ST 94.8 1.3 4.4E-05 35.7 13.6 140 202-364 17-156 (172)
234 1y8m_A FIS1; mitochondria, unk 94.2 0.73 2.5E-05 37.8 11.3 64 686-751 37-105 (144)
235 3o48_A Mitochondria fission 1 94.0 0.41 1.4E-05 38.7 9.3 70 722-793 39-111 (134)
236 4ady_A RPN2, 26S proteasome re 94.0 10 0.00034 42.6 49.7 224 412-650 383-622 (963)
237 4b4t_P 26S proteasome regulato 93.5 2.6 8.9E-05 43.5 17.3 172 117-290 51-246 (445)
238 4h7y_A Dual specificity protei 93.4 0.98 3.3E-05 37.4 10.6 104 155-260 11-127 (161)
239 1nzn_A CGI-135 protein, fissio 93.2 0.37 1.3E-05 38.8 7.9 87 604-723 18-107 (126)
240 4ady_A RPN2, 26S proteasome re 93.1 14 0.00047 41.5 42.4 271 341-633 382-672 (963)
241 4b4t_P 26S proteasome regulato 92.9 3.4 0.00012 42.6 17.0 196 522-751 30-246 (445)
242 4h7y_A Dual specificity protei 92.9 1.1 3.9E-05 37.0 10.4 106 685-792 10-128 (161)
243 3o48_A Mitochondria fission 1 92.5 1.1 3.9E-05 36.1 9.8 72 684-759 36-112 (134)
244 1y8m_A FIS1; mitochondria, unk 92.4 2.1 7.3E-05 35.1 11.4 78 720-799 36-116 (144)
245 2ff4_A Probable regulatory pro 92.0 2.3 8E-05 42.9 14.2 71 690-762 173-249 (388)
246 4gns_B Protein CSD3, chitin bi 90.8 2.4 8.3E-05 46.5 13.4 53 695-749 344-397 (754)
247 2wpv_A GET4, UPF0363 protein Y 90.3 13 0.00045 35.6 19.7 81 260-360 132-215 (312)
248 4fhn_B Nucleoporin NUP120; pro 89.7 9.9 0.00034 44.8 18.6 157 46-210 826-989 (1139)
249 3ffl_A Anaphase-promoting comp 88.8 0.96 3.3E-05 38.3 6.5 102 690-791 22-155 (167)
250 3lpz_A GET4 (YOR164C homolog); 87.2 22 0.00076 34.3 22.4 81 686-785 134-214 (336)
251 4gns_B Protein CSD3, chitin bi 86.5 4.6 0.00016 44.3 11.9 65 685-751 610-683 (754)
252 4fhn_B Nucleoporin NUP120; pro 86.3 17 0.00056 42.9 17.6 89 228-319 900-992 (1139)
253 2ff4_A Probable regulatory pro 85.8 2 6.7E-05 43.5 8.2 69 726-796 174-248 (388)
254 3txn_A 26S proteasome regulato 84.4 35 0.0012 34.0 22.6 134 34-183 58-207 (394)
255 4b4t_R RPN7, 26S proteasome re 83.8 6.6 0.00023 40.2 11.3 98 690-787 133-237 (429)
256 1zbp_A Hypothetical protein VP 81.3 29 0.00098 32.2 12.9 112 631-786 6-128 (273)
257 3lpz_A GET4 (YOR164C homolog); 80.4 44 0.0015 32.3 22.6 171 441-650 38-215 (336)
258 3ffl_A Anaphase-promoting comp 80.3 14 0.00049 31.2 9.8 61 125-185 23-91 (167)
259 2wpv_A GET4, UPF0363 protein Y 79.6 45 0.0015 32.0 23.1 81 686-785 132-215 (312)
260 1v54_E Cytochrome C oxidase po 79.2 13 0.00043 28.3 7.9 47 210-256 28-74 (109)
261 1zbp_A Hypothetical protein VP 78.4 28 0.00096 32.3 11.9 55 597-652 7-61 (273)
262 1v54_E Cytochrome C oxidase po 78.2 19 0.00066 27.4 8.7 63 568-631 26-88 (109)
263 1qsa_A Protein (soluble lytic 75.4 92 0.0031 33.4 36.6 59 115-174 95-153 (618)
264 3txn_A 26S proteasome regulato 75.0 71 0.0024 31.9 26.6 167 123-290 20-209 (394)
265 3esl_A Checkpoint serine/threo 73.5 19 0.00067 31.6 9.1 53 739-791 95-148 (202)
266 4b4t_R RPN7, 26S proteasome re 70.3 34 0.0012 34.9 11.9 60 159-218 133-194 (429)
267 2y69_E Cytochrome C oxidase su 69.2 41 0.0014 27.2 9.0 61 570-631 71-131 (152)
268 2y69_E Cytochrome C oxidase su 66.2 48 0.0016 26.8 8.8 46 210-255 71-116 (152)
269 3esl_A Checkpoint serine/threo 65.6 64 0.0022 28.4 10.6 75 547-621 72-149 (202)
270 2p58_C Putative type III secre 65.2 34 0.0012 25.9 7.4 79 702-788 21-99 (116)
271 1wdy_A 2-5A-dependent ribonucl 64.1 56 0.0019 30.5 11.7 54 130-191 10-66 (285)
272 2uwj_G Type III export protein 62.0 34 0.0011 25.9 6.8 79 702-788 20-98 (115)
273 2uwj_G Type III export protein 61.4 50 0.0017 25.0 9.0 51 131-187 48-98 (115)
274 2p58_C Putative type III secre 60.1 54 0.0018 24.9 9.5 50 132-187 50-99 (116)
275 4a1g_A Mitotic checkpoint seri 54.4 68 0.0023 26.7 8.5 53 740-792 82-135 (152)
276 3eiq_C Programmed cell death p 54.1 1.3E+02 0.0044 29.5 11.8 25 555-579 57-81 (358)
277 4a1g_A Mitotic checkpoint seri 49.4 1.1E+02 0.0039 25.4 9.9 50 571-620 84-134 (152)
278 2wvi_A Mitotic checkpoint seri 48.7 44 0.0015 28.3 6.6 53 705-757 77-130 (164)
279 1qsa_A Protein (soluble lytic 46.9 3E+02 0.01 29.5 38.9 115 313-431 229-347 (618)
280 1wdy_A 2-5A-dependent ribonucl 46.8 1.5E+02 0.0051 27.3 11.4 20 382-401 193-212 (285)
281 3kea_A K1L; tropism, ANK repea 46.2 1.4E+02 0.0048 28.0 11.0 19 340-358 165-183 (285)
282 2wvi_A Mitotic checkpoint seri 44.7 1.4E+02 0.0049 25.2 10.2 52 570-621 78-130 (164)
283 2d2s_A Exocyst complex compone 43.5 1.2E+02 0.0042 27.5 9.3 22 129-150 25-46 (235)
284 3eiq_C Programmed cell death p 42.3 81 0.0028 30.9 8.3 26 335-360 56-81 (358)
285 1k1a_A B-cell lymphoma 3-encod 42.2 1.9E+02 0.0064 25.8 12.1 18 204-221 18-35 (241)
286 3eu9_A Huntingtin-interacting 42.2 1.9E+02 0.0063 25.8 11.1 8 413-420 184-191 (240)
287 3eu9_A Huntingtin-interacting 41.9 1.2E+02 0.0041 27.1 9.6 50 375-428 181-232 (240)
288 2d2s_A Exocyst complex compone 41.0 1.9E+02 0.0067 26.2 10.2 51 505-555 88-138 (235)
289 4b4t_S RPN3, 26S proteasome re 40.4 1.3E+02 0.0044 31.2 9.7 65 227-291 231-299 (523)
290 3jxi_A Vanilloid receptor-rela 38.9 72 0.0025 29.3 7.5 21 238-258 13-33 (260)
291 1k1a_A B-cell lymphoma 3-encod 38.5 2.1E+02 0.0073 25.4 12.3 52 233-284 12-65 (241)
292 4aez_C MAD3, mitotic spindle c 37.6 69 0.0024 28.7 6.3 53 704-756 130-183 (223)
293 2r9g_A AAA ATPase, central reg 36.4 2.2E+02 0.0075 24.9 9.5 92 374-466 17-116 (204)
294 4aez_C MAD3, mitotic spindle c 35.5 53 0.0018 29.4 5.3 53 740-792 131-184 (223)
295 3t8k_A Uncharacterized protein 33.9 2.2E+02 0.0074 24.5 9.3 87 704-791 90-184 (186)
296 4b4t_S RPN3, 26S proteasome re 33.5 4.2E+02 0.014 27.4 12.9 63 123-185 232-298 (523)
297 3pvs_A Replication-associated 33.4 3.8E+02 0.013 27.2 12.2 55 204-258 267-326 (447)
298 4gq2_M Nucleoporin NUP120; bet 33.2 3.7E+02 0.013 30.7 13.2 133 126-276 814-950 (950)
299 3kae_A CDC27, possible protein 31.4 1.5E+02 0.0053 25.1 6.9 54 697-750 71-141 (242)
300 3jxi_A Vanilloid receptor-rela 30.1 93 0.0032 28.5 6.7 16 484-499 233-248 (260)
301 2b7e_A PRE-mRNA processing pro 29.3 38 0.0013 22.7 2.5 29 174-202 3-31 (59)
302 3hra_A Ankyrin repeat family p 28.8 2.7E+02 0.0094 23.8 9.5 15 388-402 158-172 (201)
303 3kea_A K1L; tropism, ANK repea 28.4 3.6E+02 0.012 25.0 10.9 22 302-323 162-183 (285)
304 3pvs_A Replication-associated 27.9 4.9E+02 0.017 26.4 13.7 21 381-401 268-288 (447)
305 2etb_A Transient receptor pote 27.8 1.6E+02 0.0054 26.8 7.8 22 237-258 9-30 (256)
306 2cos_A Serine/threonine protei 27.6 56 0.0019 21.3 2.9 36 745-785 12-49 (54)
307 2keb_A DNA polymerase subunit 26.1 2.1E+02 0.0072 21.5 6.2 59 704-764 25-88 (101)
308 3hra_A Ankyrin repeat family p 25.7 3E+02 0.01 23.5 9.0 15 423-437 158-172 (201)
309 3ubw_A 14-3-3E, 14-3-3 protein 25.2 4E+02 0.014 24.5 11.1 48 603-650 172-227 (261)
310 4g8k_A 2-5A-dependent ribonucl 25.0 4.5E+02 0.015 25.0 13.5 53 130-191 30-86 (337)
311 2zu6_B Programmed cell death p 24.1 4.7E+02 0.016 24.8 11.0 67 440-507 168-236 (307)
312 2ijq_A Hypothetical protein; s 23.4 3.3E+02 0.011 22.9 7.8 63 227-290 33-103 (161)
313 2xig_A Ferric uptake regulatio 23.2 2.3E+02 0.0079 23.4 7.0 47 160-206 29-75 (150)
314 3t8k_A Uncharacterized protein 22.8 3.6E+02 0.012 23.0 10.8 18 386-403 92-109 (186)
315 1oyz_A Hypothetical protein YI 22.7 4.5E+02 0.015 24.1 26.1 103 690-804 175-278 (280)
316 3ljn_A Hypothetical protein; a 22.7 3.8E+02 0.013 25.9 10.0 14 344-357 181-194 (364)
317 3bge_A Predicted ATPase; struc 22.4 3.9E+02 0.013 23.3 9.3 93 163-255 10-110 (201)
318 4ets_A Ferric uptake regulatio 22.2 1.8E+02 0.0062 24.4 6.2 69 279-348 14-84 (162)
319 4ets_A Ferric uptake regulatio 21.7 1.3E+02 0.0043 25.5 5.1 46 161-206 36-83 (162)
320 2fe3_A Peroxide operon regulat 21.4 2E+02 0.0069 23.6 6.3 41 163-203 27-67 (145)
321 3ctd_A Putative ATPase, AAA fa 21.4 4.3E+02 0.015 23.3 9.5 99 367-466 31-137 (213)
322 2ion_A PDCD4, programmed cell 21.2 3.5E+02 0.012 22.4 7.6 94 512-615 13-112 (152)
323 1ug3_A EIF4GI, eukaryotic prot 20.9 5.7E+02 0.019 24.6 11.0 23 161-183 15-37 (339)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9e-40 Score=365.78 Aligned_cols=494 Identities=12% Similarity=0.054 Sum_probs=405.8
Q ss_pred HHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHH
Q 037510 133 AQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKAL 212 (806)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 212 (806)
...|.+..+...+..+.. +++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHH
Confidence 345556666666665543 5788899999999999999999999999986 5678888889999999999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---------------CCCCChhhHHHHHHHHHhcCC
Q 037510 213 DFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEK---------------GISRTAVTYTTLTKGYCKQHK 277 (806)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~ 277 (806)
.+|+++... +++..+++.++.+|.+.|++++|.++|+++... +.+.+..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 999988653 678889999999999999999999999853221 223357899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHH--HH-HHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHH
Q 037510 278 MEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAI--RV-LNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKR 354 (806)
Q Consensus 278 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (806)
+++|+++|++|.+.. +.+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.+
T Consensus 216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 999999999998862 334555666655554433322221 11 4555555555566678888999999999999999
Q ss_pred HHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037510 355 VLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCV 434 (806)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 434 (806)
+|+++.+. +++..+|+.++.++.+.|++++|.++|+++.+.+. .+..++..++.++.+.|++++|..+++.+.+. .
T Consensus 294 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~ 369 (597)
T 2xpi_A 294 YLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR-H 369 (597)
T ss_dssp HHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-C
T ss_pred HHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-C
Confidence 99999875 68999999999999999999999999999998753 37888999999999999999999999999865 3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037510 435 CPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTL 514 (806)
Q Consensus 435 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 514 (806)
+.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++..+.+.|++++|.++|+++.+.+ +.+..+|..+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 447 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFL 447 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 4578899999999999999999999999998763 4568899999999999999999999999999875 5678999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCC--Hh
Q 037510 515 SDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTM----GLYPN--IV 588 (806)
Q Consensus 515 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p~--~~ 588 (806)
+.+|.+.|++++|.++|+.+. .. .+.+..+|+.++..+.+.|++++|.++|+++.+. +..|+ ..
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~---------~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSY---------AL-FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH---------HH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH---------Hh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 999999999999999999983 22 2346889999999999999999999999999876 66787 78
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDF 653 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 653 (806)
+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..++.+|.+.|++++|...++++.+.++
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999875 55889999999999999999999999999998753
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.7e-40 Score=366.36 Aligned_cols=522 Identities=13% Similarity=0.025 Sum_probs=369.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 037510 202 YCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEA 281 (806)
Q Consensus 202 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 281 (806)
..+.|.+..+...+..+. .++...|+.++..|.+.|++++|..+|+++.... |+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHH
Confidence 344555555555554432 3567778888888888888888888888877533 5667777788888888888888
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 282 ENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
..+|+++.. .+++..+++.++.+|.+.|++++|.++|+++.. +.. ....+.+.+ -..
T Consensus 137 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~-----------~~~ 193 (597)
T 2xpi_A 137 KCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLL-----------MQD 193 (597)
T ss_dssp HHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT-----TC-------------------------CCC
T ss_pred HHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCC-----ccc----ccccccccc-----------ccc
Confidence 888877753 245677777777778788888888777774211 110 000000000 012
Q ss_pred CCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHH--HH-HHHHHHcCCCCCh
Q 037510 362 WNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEAL--HL-WLMMLKRCVCPNE 438 (806)
Q Consensus 362 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~ 438 (806)
.+.+++..+|+.++.+|.+.|++++|.+.|++|.+.+.. +...+..+...+...+..+.+. .+ +..+...+..+..
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 234556777888888888888888888888888775321 3334444444333322222111 11 3344443334445
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037510 439 VGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGY 518 (806)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (806)
.+|..++..|.+.|++++|.++|+++.+. +++..+++.++..+.+.|++++|..+|+++.+.+ +.+..++..++.++
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHH
Confidence 56666777888888888888888888765 5788888888888888888888888888888765 44677788888888
Q ss_pred HhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 037510 519 CKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWC 598 (806)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~ 598 (806)
.+.|++++|..+++.+ .. ..+.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.
T Consensus 350 ~~~g~~~~A~~~~~~~---------~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 418 (597)
T 2xpi_A 350 HESGEKNKLYLISNDL---------VD-RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFA 418 (597)
T ss_dssp HHHTCHHHHHHHHHHH---------HH-HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH---------Hh-hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 8888888888888877 32 234567788888888888888888888888887752 335778899999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHH
Q 037510 599 DAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDE 678 (806)
Q Consensus 599 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 678 (806)
+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+..+
T Consensus 419 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------------- 472 (597)
T 2xpi_A 419 IEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ------------------------- 472 (597)
T ss_dssp HHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------------
Confidence 9999999999999998764 45778888999999999999999999999887542
Q ss_pred hhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 679 SARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT----GFSPD--NFTYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 679 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
.++.+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|++.++++.+.
T Consensus 473 -------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 473 -------YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp -------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 36778999999999999999999999999875 56787 568999999999999999999999999885
Q ss_pred CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHhh
Q 037510 753 NLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTV-VTYNILIDGY 803 (806)
Q Consensus 753 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~ 803 (806)
+ ..+..+|..++.+|.+.|++++|.++++++.+ +.|+. ..|..+-..|
T Consensus 546 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 546 S-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 4 33788899999999999999999999999988 66764 4555554444
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.7e-26 Score=242.72 Aligned_cols=318 Identities=19% Similarity=0.177 Sum_probs=165.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Q 037510 404 VTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGL 483 (806)
Q Consensus 404 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 483 (806)
.+|..+...+.+.|++++|...|+++++.. +.+..++..++.++.+.|++++|...|+++.+.. +.+...+..+...+
T Consensus 68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 145 (388)
T 1w3b_A 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLL 145 (388)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 334444444444444444444444443321 1122334444444444444444444444444332 12233344444444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHH
Q 037510 484 CKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAF 563 (806)
Q Consensus 484 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 563 (806)
...|++++|...|+++.+.. +.+..+|..+...+...|++++|...++++. ... +.+...+..+...+.
T Consensus 146 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---------~~~-p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV---------TLD-PNFLDAYINLGNVLK 214 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH---------HHC-TTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------hcC-CCcHHHHHHHHHHHH
Confidence 44555555555555554442 2234455555555555555555555555441 111 122344444555555
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037510 564 KSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANI 643 (806)
Q Consensus 564 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 643 (806)
..|++++|...+++..+.. +.+..++..+..++...|++++|.+.|+++++.+ +.+..++..++.++.+.|++++|..
T Consensus 215 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 292 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554431 2234555666666666666666666666666542 2245566666666666666666666
Q ss_pred HHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH
Q 037510 644 FLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN 723 (806)
Q Consensus 644 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 723 (806)
.++++++..+ .+..+++.++..+...|++++|...++++.+ ..|+.
T Consensus 293 ~~~~al~~~p--------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 338 (388)
T 1w3b_A 293 CYNTALRLCP--------------------------------THADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEF 338 (388)
T ss_dssp HHHHHHHHCT--------------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTC
T ss_pred HHHHHHhhCc--------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCc
Confidence 6666665431 2455666666666666666666666666666 44543
Q ss_pred -HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcC
Q 037510 724 -FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSG 772 (806)
Q Consensus 724 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 772 (806)
.++..++.+|.+.|++++|++.|+++++ +.| +...|..+...+...|
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 339 AAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 3666666666666666666666666665 344 3445555555555544
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.8e-26 Score=241.05 Aligned_cols=383 Identities=14% Similarity=0.039 Sum_probs=333.7
Q ss_pred HHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 037510 128 ILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKS 207 (806)
Q Consensus 128 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 207 (806)
+...+.+.|++++|++.++.+.+..+ .+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34567889999999999999988754 366778888889999999999999999988753 4578899999999999999
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 208 MEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRR 287 (806)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 287 (806)
+++|...|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+..+ .+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998864 34577899999999999999999999999998764 3566788889999999999999999999
Q ss_pred HHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCC
Q 037510 288 MKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPD 367 (806)
Q Consensus 288 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 367 (806)
+.+. .+.+..+|..+...+.+.|++++|...|+++.+.++. +...+..+...+...|++++|...|++..... +.+
T Consensus 161 al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 161 AIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 9886 3446788999999999999999999999999987543 67789999999999999999999999988764 446
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037510 368 SFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDI 447 (806)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (806)
..++..+...+.+.|++++|.+.++++.+.+. .+..+|..+...+.+.|++++|...++++++. .+.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHH
Confidence 78899999999999999999999999998642 25678999999999999999999999999987 35578899999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037510 448 LFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVG 522 (806)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 522 (806)
+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+...|..+...+...|
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 999999999999999999863 4567889999999999999999999999999864 446777887777776655
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.3e-28 Score=261.48 Aligned_cols=205 Identities=13% Similarity=0.170 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHCCCCCCHh-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HH
Q 037510 570 SLVDLLAEMQTMGLYPNIV-TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGK---------ID 639 (806)
Q Consensus 570 ~a~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~ 639 (806)
.+..+.+++.+++..+.+. .++.+|++|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 4455667777777665543 5788899999999999999999999999999999999999999987664 68
Q ss_pred HHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 037510 640 EANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGF 719 (806)
Q Consensus 640 ~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 719 (806)
+|.++|++|...|+.| |..+|++||.+|++.|++++|.++|++|.+.|+
T Consensus 88 ~A~~lf~~M~~~G~~P-------------------------------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~ 136 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVP-------------------------------NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI 136 (501)
T ss_dssp HHHHHHHHHHHTTCCC-------------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCC-------------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 8999999999998765 899999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 037510 720 SPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNIL 799 (806)
Q Consensus 720 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 799 (806)
.||..||+.|+.+|++.|++++|.++|++|.+.|+.||..+|++|+.+|++.|++++|.+++++|.+.|..|+..||+.|
T Consensus 137 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 137 QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc
Q 037510 800 IDGYCK 805 (806)
Q Consensus 800 i~~~~~ 805 (806)
++.|++
T Consensus 217 ~~~F~s 222 (501)
T 4g26_A 217 EEWFKS 222 (501)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 998875
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.5e-28 Score=261.06 Aligned_cols=185 Identities=16% Similarity=0.185 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHcCCCCChhhH
Q 037510 195 CSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGD---------LNGAKRVLEWTCEKGISRTAVTY 265 (806)
Q Consensus 195 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~~~ 265 (806)
++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. ++.|.++|++|.+.|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344444444444444444444444444444444444444444443322 34455555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 037510 266 TTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCK 345 (806)
Q Consensus 266 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 345 (806)
++||.+|++.|++++|.++|++|.+. |+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 55555555555555555555555554 45555555555555555555555555555555555555555555555555555
Q ss_pred cCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHh
Q 037510 346 LGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCR 380 (806)
Q Consensus 346 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 380 (806)
.|+.++|.++|++|.+.++.|+..||+.++..|+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555543
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1e-23 Score=230.96 Aligned_cols=453 Identities=13% Similarity=0.044 Sum_probs=309.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 037510 262 AVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLIN 341 (806)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 341 (806)
...+..+...+.+.|++++|+..|+++.+.. |+..++..+..++.+.|++++|...++++.+.++ .+...+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHH
Confidence 4556667777777777777777777777652 5677777777777777777777777777776543 25567777777
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHH
Q 037510 342 GYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDE 421 (806)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 421 (806)
+|.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+..-....
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------- 152 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK-------- 152 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH--------
Confidence 7777777777777777776654 3444444444444444333333333333333332222222111110000
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 037510 422 ALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCK---MGKMTEAQKIFDK 498 (806)
Q Consensus 422 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~ 498 (806)
......|+.......+..+...... . ....+.+...+......+.. .|++++|...+++
T Consensus 153 --------~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 214 (514)
T 2gw1_A 153 --------DKQENLPSVTSMASFFGIFKPELTF----A------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTK 214 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCC----S------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred --------hhccCCchhHHHHHHHhhcCHHHHH----H------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 0001112222111111111000000 0 00002234444444444444 7889999999998
Q ss_pred HHH-----cCC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhc
Q 037510 499 MKE-----LGC--------LPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKS 565 (806)
Q Consensus 499 ~~~-----~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 565 (806)
+.+ ... +.+..++..+...+...|++++|...++.+ .... |+...+..++..+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~---------l~~~--~~~~~~~~l~~~~~~~ 283 (514)
T 2gw1_A 215 AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKA---------IELF--PRVNSYIYMALIMADR 283 (514)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH---------HHHC--CCHHHHHHHHHHHHTS
T ss_pred HHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---------HhhC--ccHHHHHHHHHHHHHC
Confidence 887 311 223567888889999999999999999987 3333 2378888899999999
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037510 566 RELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFL 645 (806)
Q Consensus 566 ~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 645 (806)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++++.. +.+...+..++..+...|++++|...+
T Consensus 284 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 361 (514)
T 2gw1_A 284 NDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLF 361 (514)
T ss_dssp SCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998763 3456788889999999999999999999999864 346778889999999999999999999
Q ss_pred HHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH--
Q 037510 646 QKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-- 723 (806)
Q Consensus 646 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-- 723 (806)
+++.+..+ .+..++..++..|...|++++|...++++.+ ..|+.
T Consensus 362 ~~~~~~~~--------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~ 407 (514)
T 2gw1_A 362 SEAKRKFP--------------------------------EAPEVPNFFAEILTDKNDFDKALKQYDLAIE--LENKLDG 407 (514)
T ss_dssp HHHHHHST--------------------------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHTSSS
T ss_pred HHHHHHcc--------------------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccch
Confidence 99987642 2566888999999999999999999999988 34443
Q ss_pred -----HhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 724 -----FTYSTLIHGYAA---VGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 724 -----~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
.+|..++..|.. .|++++|++.++++++. .| +..++..++.+|.+.|++++|..+++++.+ +.|+..
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence 288999999999 99999999999999984 45 677888999999999999999999999988 667654
Q ss_pred hH
Q 037510 795 TY 796 (806)
Q Consensus 795 ~~ 796 (806)
..
T Consensus 484 ~~ 485 (514)
T 2gw1_A 484 EK 485 (514)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.4e-23 Score=226.84 Aligned_cols=458 Identities=12% Similarity=0.024 Sum_probs=329.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHH
Q 037510 226 NVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLI 305 (806)
Q Consensus 226 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 305 (806)
....+......+.+.|++++|...|+++.+.+ |+..+|..+..++.+.|++++|+..++++.+. .+.+..++..+.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 80 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHH
Confidence 35677888899999999999999999999976 68999999999999999999999999999986 345678899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHH
Q 037510 306 DGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMT 385 (806)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 385 (806)
.++.+.|++++|...|+++.+.+. ++......++..+.+......+.+.+..+...+..|+...++.-.....
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------ 153 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKD------ 153 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHh------
Confidence 999999999999999999999864 3555555666666555555555555544444333333322221110000
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---cCChhHHHHHHH
Q 037510 386 EAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFN---KGDFYGAVKLWN 462 (806)
Q Consensus 386 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 462 (806)
.....|+.......+..+....... ....+.+...+......+.. .|++++|+..|+
T Consensus 154 ----------~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 213 (514)
T 2gw1_A 154 ----------KQENLPSVTSMASFFGIFKPELTFA----------NYDESNEADKELMNGLSNLYKRSPESYDKADESFT 213 (514)
T ss_dssp -------------CCCCHHHHHHHHTTSCCCCCCS----------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred ----------hccCCchhHHHHHHHhhcCHHHHHH----------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 0011222221111111111000000 00001223344444444444 788888888888
Q ss_pred HHHH-----CCC--------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037510 463 NILA-----RGF--------YKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFK 529 (806)
Q Consensus 463 ~~~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 529 (806)
++.+ ... +.+..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 291 (514)
T 2gw1_A 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYN 291 (514)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGG
T ss_pred HHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHH
Confidence 8776 210 2245677788888999999999999999998875 338888889999999999999999
Q ss_pred HHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHH
Q 037510 530 IKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKA 609 (806)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 609 (806)
.++.+. .. .+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...
T Consensus 292 ~~~~~~---------~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 292 YFDKAL---------KL-DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp HHHHHH---------TT-CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred HHHHHh---------hc-CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998872 22 23356788889999999999999999999998864 33567888899999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChH
Q 037510 610 YFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYV 689 (806)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (806)
++++.+.. +.+...+..++..+.+.|++++|...++++.+...... ...-...
T Consensus 361 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--------------------------~~~~~~~ 413 (514)
T 2gw1_A 361 FSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD--------------------------GIYVGIA 413 (514)
T ss_dssp HHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS--------------------------SCSSCSH
T ss_pred HHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc--------------------------hHHHHHH
Confidence 99999863 44677888999999999999999999999886532210 0001144
Q ss_pred HHHHHHHHHHh---cCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 690 VYNIVIAGICK---SGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 690 ~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
++..++.++.. .|++++|...|+++.+ ..|+. .++..++.+|.+.|++++|.+.|+++++ +.|+.
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~ 482 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASK--LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTM 482 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hcccc
Confidence 88899999999 9999999999999999 56764 5889999999999999999999999999 45643
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2.3e-21 Score=208.17 Aligned_cols=338 Identities=11% Similarity=0.034 Sum_probs=206.1
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 317 AIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLR 396 (806)
Q Consensus 317 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 396 (806)
+...+.++.... +.+...+..++..|.+.|++++|+.+|+++.+.. +.+..+|..+...+...|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333444444332 2345566666666666666666666666665542 44556666666666666666666666666665
Q ss_pred CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 037510 397 QGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNE---VGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNT 473 (806)
Q Consensus 397 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 473 (806)
.+. .+..++..+...+.+.|++++|...|+++.+.. +.+. ..+..++..+..
T Consensus 89 ~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~----------------------- 143 (450)
T 2y4t_A 89 LKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM----------------------- 143 (450)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-----------------------
T ss_pred cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-----------------------
Confidence 532 234555566666666666666666666665542 1122 333333322110
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHH
Q 037510 474 ITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSID 553 (806)
Q Consensus 474 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (806)
..+..+...+...|++++|...++++.+.. +.+..++..++.++...|++++|...++.+. .. .+.+..
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~-~~~~~~ 212 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAAS---------KL-KNDNTE 212 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH---------HH-HCSCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHH---------Hh-CCCCHH
Confidence 011223444666777777777777777654 4466677777777777777777777777662 11 123456
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HhHHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCC
Q 037510 554 MYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN-IVTYGAL------------ISGWCDAGMLNKAFKAYFDMIEKGFSP 620 (806)
Q Consensus 554 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~ 620 (806)
++..++..+...|++++|...++++.+. .|+ ...+..+ ...+.+.|++++|...|+++++. .|
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p 288 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EP 288 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 6777777777777777777777777654 232 3333333 66777788888888888888775 23
Q ss_pred C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHH
Q 037510 621 N-----VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVI 695 (806)
Q Consensus 621 ~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 695 (806)
+ ...+..++.++.+.|++++|...++++++..+ .+..+|..++
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--------------------------------~~~~~~~~l~ 336 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP--------------------------------DNVNALKDRA 336 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--------------------------------ccHHHHHHHH
Confidence 3 34667777788888888888888888776532 2566778888
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHH
Q 037510 696 AGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLI 730 (806)
Q Consensus 696 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~ 730 (806)
.+|...|++++|...|+++++ +.|+.. ++..+.
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 888888888888888888887 667653 555555
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.5e-21 Score=215.05 Aligned_cols=451 Identities=13% Similarity=0.063 Sum_probs=279.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 037510 227 VVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLID 306 (806)
Q Consensus 227 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 306 (806)
...+..+...+.+.|++++|...|+++.+..+ .+..+|..+..+|.+.|++++|++.|+++.+. .+.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHH
Confidence 45566666667777777777777777766543 35666666677777777777777777766654 2334556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCC--CCCChhcHHHHHHHHHhcCCH
Q 037510 307 GYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWN--LRPDSFSFNTLVDGYCRECDM 384 (806)
Q Consensus 307 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~ 384 (806)
.+...|++++|...|+ ....... .....+..+...+...+|...++++.... ..+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGD----FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCC----CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 6666666666666664 2222111 11122333344444455666665554421 011111122233333334444
Q ss_pred HHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 037510 385 TEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNI 464 (806)
Q Consensus 385 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 464 (806)
+.+...+..... .+. .+..+..++.... .. . ........|++++|..+++++
T Consensus 177 ~~~~~~~~~~~~----~~~-~~~~~~~~l~~~~-------------~~----~------~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 177 HLEVSSVNTSSN----YDT-AYALLSDALQRLY-------------SA----T------DEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp HHHHHTSCCCCS----SCS-SHHHHHHHHHHHH-------------TC----S------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccc----ccc-HHHHHHHHHHHHH-------------Hh----h------hhhhHHHHHHHHHHHHHHHHH
Confidence 333332222111 011 1111111111000 00 0 000011123566666666666
Q ss_pred HHCCCCCc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 037510 465 LARGFYKN-------TITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERR 537 (806)
Q Consensus 465 ~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 537 (806)
.+.. +.+ ..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++.+.
T Consensus 229 l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 303 (537)
T 3fp2_A 229 LSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAV-- 303 (537)
T ss_dssp HC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHH--
T ss_pred HHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHh--
Confidence 6543 112 2245556667777888888888888888764 557777888888888888888888888762
Q ss_pred ccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 037510 538 EILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKG 617 (806)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 617 (806)
.. .+.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++++..
T Consensus 304 -------~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 304 -------DL-NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp -------HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -------cc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 22 12356778888888888888888888888888753 2346778888999999999999999999999873
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHH
Q 037510 618 FSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAG 697 (806)
Q Consensus 618 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 697 (806)
+.+...+..++..+...|++++|...++++++..+... ........+..+..+
T Consensus 375 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--------------------------~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 375 -PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE--------------------------KIHVGIGPLIGKATI 427 (537)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS--------------------------SCSSTTHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch--------------------------hhHHHHHHHHHHHHH
Confidence 44677888999999999999999999999886532110 001122335556677
Q ss_pred HHhc----------CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 698 ICKS----------GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 698 ~~~~----------g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
+... |++++|...|+++.+ ..|+. .++..++.+|.+.|++++|++.|+++++. .|+.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~ 495 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACE--LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL--ARTM 495 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C--C
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCc
Confidence 7887 999999999999999 56765 58999999999999999999999999994 4543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=3.7e-21 Score=206.55 Aligned_cols=330 Identities=11% Similarity=0.035 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHH
Q 037510 279 EEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRC 358 (806)
Q Consensus 279 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 358 (806)
..+...+...... .+.+...+..+...+.+.|++++|..+|+++.+.. +.+...+..++.+|...|++++|...|++
T Consensus 9 ~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQ--SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccc--cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444455555443 34567789999999999999999999999999864 34788999999999999999999999999
Q ss_pred HhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-c---chHHHHHHH------------HHhcCCHHHH
Q 037510 359 MGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPS-V---VTYNTLLKG------------LCRVGDVDEA 422 (806)
Q Consensus 359 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~---~~~~~ll~~------------~~~~~~~~~a 422 (806)
+.+.+ +.+..++..+...+.+.|++++|.+.|+++.+.. |+ . ..+..+... +...|++++|
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 98875 5568889999999999999999999999999863 43 3 455555443 4455555555
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 423 LHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKEL 502 (806)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 502 (806)
...++.+.+.. +.+...+..++.+|.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555431 2244445555555555555555555555554432 223444555555555555555555555555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 037510 503 GCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMG 582 (806)
Q Consensus 503 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 582 (806)
. +.+...+..+... .. ......++..+.+.|++++|...++++.+.
T Consensus 241 ~-p~~~~~~~~~~~~--------------~~------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~- 286 (450)
T 2y4t_A 241 D-QDHKRCFAHYKQV--------------KK------------------LNKLIESAEELIRDGRYTDATSKYESVMKT- 286 (450)
T ss_dssp C-TTCHHHHHHHHHH--------------HH------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred C-CChHHHHHHHHHH--------------HH------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 2 1112211111100 00 001223478889999999999999999885
Q ss_pred CCCC-----HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 037510 583 LYPN-----IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFD 652 (806)
Q Consensus 583 ~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 652 (806)
.|+ ...+..+...+.+.|++++|+..++++++.. +.+...+..++.+|...|++++|...++++++..
T Consensus 287 -~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 287 -EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred -CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 344 3478888999999999999999999999863 4478999999999999999999999999999865
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.5e-21 Score=214.93 Aligned_cols=436 Identities=13% Similarity=0.040 Sum_probs=296.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 037510 262 AVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLIN 341 (806)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 341 (806)
...|..+...+.+.|++++|++.|+++.+. .+.+..++..+..++.+.|++++|.+.++++.+.++. +...+..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHH
Confidence 455666677777777777777777777665 2345666777777777777777777777777665432 5566666777
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCcchHHHHHHHHHhcCCH
Q 037510 342 GYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQG--IEPSVVTYNTLLKGLCRVGDV 419 (806)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~ 419 (806)
.+...|++++|...|+.+.. .|+. ....+..+...+...+|...++++.... ..+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL---NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhc---CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 77777777777777753322 1221 1122333344444556666666654421 001111122223333333333
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH-HHHHHHHHH--------HHhcCCHH
Q 037510 420 DEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNT-ITFNTMIKG--------LCKMGKMT 490 (806)
Q Consensus 420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~--------~~~~g~~~ 490 (806)
+.+...+.. .... .+.. .....+... ....|+++
T Consensus 177 ~~~~~~~~~-----------------------------------~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 219 (537)
T 3fp2_A 177 HLEVSSVNT-----------------------------------SSNY--DTAYALLSDALQRLYSATDEGYLVANDLLT 219 (537)
T ss_dssp HHHHHTSCC-----------------------------------CCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHhh-----------------------------------cccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 333222211 1110 0110 011111111 12235789
Q ss_pred HHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHH
Q 037510 491 EAQKIFDKMKELGCLPNI-------ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAF 563 (806)
Q Consensus 491 ~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 563 (806)
+|...++++.+.. +.+. .++..+...+...|++++|...++.+ ... .|+...+..+...+.
T Consensus 220 ~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~---------~~~--~~~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 220 KSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES---------INL--HPTPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------HHH--CCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH---------Hhc--CCCchHHHHHHHHHH
Confidence 9999999998865 2232 35677778889999999999999987 332 355788888999999
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037510 564 KSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANI 643 (806)
Q Consensus 564 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 643 (806)
..|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++++.. +.+...+..+..++...|++++|..
T Consensus 288 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998863 3467789999999999999999999999999864 3456788999999999999999999
Q ss_pred HHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH
Q 037510 644 FLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN 723 (806)
Q Consensus 644 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 723 (806)
.++++.+..+ .+..++..++..+...|++++|...|+++.+. .|+.
T Consensus 366 ~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~ 411 (537)
T 3fp2_A 366 FFNETKLKFP--------------------------------TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL--EEVQ 411 (537)
T ss_dssp HHHHHHHHCT--------------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHC
T ss_pred HHHHHHHhCC--------------------------------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCcc
Confidence 9999987642 25678899999999999999999999999874 3322
Q ss_pred -------HhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 724 -------FTYSTLIHGYAAV----------GDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 724 -------~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
..+..++.++... |++++|+..|+++++. .| +...+..++.+|.+.|++++|.++++++.
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1355667788888 9999999999999984 45 67789999999999999999999999998
Q ss_pred HCCCCCCHh
Q 037510 786 QKGLTPTVV 794 (806)
Q Consensus 786 ~~g~~p~~~ 794 (806)
+ +.|+..
T Consensus 490 ~--~~~~~~ 496 (537)
T 3fp2_A 490 I--LARTMD 496 (537)
T ss_dssp H--HC--CH
T ss_pred H--hCCCcH
Confidence 8 555533
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=2.4e-17 Score=184.37 Aligned_cols=643 Identities=14% Similarity=0.151 Sum_probs=329.5
Q ss_pred ChHHHHHHHHh-cCCChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCc-------
Q 037510 33 SDDLLDSVLQK-LRLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAG------- 104 (806)
Q Consensus 33 ~~~~~~~vl~~-~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~------- 104 (806)
+|+.+ .+|.. ++.+|+.|..|-.-+.+..+ .......++.++...+...++.++|.+.++..+.....
T Consensus 511 ~pDy~-~ll~~~~~~~P~~~~~fa~~L~~~~~---p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle 586 (1630)
T 1xi4_A 511 TPDWI-FLLRNVMRISPDQGQQFAQMLVQDEE---PLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLE 586 (1630)
T ss_pred CccHH-HHHHHHhhcChHHHHHHHHHHhcCCC---CccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHH
Confidence 45544 23333 36789999998887764433 34567889999999999999999998887653221110
Q ss_pred ------hhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhc--CCCcC-hhhHHHHHHHHHHcCChHH
Q 037510 105 ------FLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKY--GCIPS-LRSCNCLLSNLVKNGEGYV 175 (806)
Q Consensus 105 ------~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~-~~~~~~ll~~~~~~~~~~~ 175 (806)
+.+-+.++. ..-++..-...+...|-++|.++.|++.|..+... -+..+ ...-.. +..|...=..+.
T Consensus 587 ~Nl~~~pqvadail~---~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~-l~~~fg~l~~~~ 662 (1630)
T 1xi4_A 587 MNLMHAPQVADAILG---NQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEW-LVNYFGSLSVED 662 (1630)
T ss_pred HhhccchhHHHHHHh---cCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHH-HHHHHhcCCHHH
Confidence 111111111 11223344456778899999999999999855432 11101 111122 333444466799
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc-----------CCCcCHHHHHHHHHHHHhCCCHH
Q 037510 176 ALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENL-----------GFELNVVTYNSLIDGYVSLGDLN 244 (806)
Q Consensus 176 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~ 244 (806)
+++.+++|++.++..|....-.+..-|...=-.+...++|++-... ...-|..+....|.++++.|++.
T Consensus 663 s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~ 742 (1630)
T 1xi4_A 663 SLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIK 742 (1630)
T ss_pred HHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhCCch
Confidence 9999999998665554433222222222222233333333332211 23457888889999999999988
Q ss_pred HHHHHHHH------------HHHcCCCCChhh----------HHHHHHHHHhcCCHHHHHHHH-------------HHHH
Q 037510 245 GAKRVLEW------------TCEKGISRTAVT----------YTTLTKGYCKQHKMEEAENML-------------RRMK 289 (806)
Q Consensus 245 ~A~~~~~~------------~~~~~~~~~~~~----------~~~li~~~~~~g~~~~a~~~~-------------~~~~ 289 (806)
+.+++.++ +++... +|... ..-|+.-+.+.+... -+++| -.+.
T Consensus 743 everi~res~~y~~e~vk~flk~~kl-~d~~pli~vCdr~~~v~~l~~yLy~n~~~~-~ie~yv~~vnp~~~p~Vvg~ll 820 (1630)
T 1xi4_A 743 EVERICRESNCYDPERVKNFLKEAKL-TDQLPLIIVCDRFDFVHDLVLYLYRNNLQK-YIEIYVQKVNPSRLPVVIGGLL 820 (1630)
T ss_pred hhhHHhccCCCCCHHHHHHHHhhCCC-CCCCCceeeccccccHHHHHHHHHhcCchh-HHHHHHhccCCcccchhhhhhh
Confidence 87766543 222222 12111 112222222222221 12222 1111
Q ss_pred hcCCCCCChHh-------------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHH----
Q 037510 290 EEDDVIVDEYA-------------YGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEA---- 352 (806)
Q Consensus 290 ~~~~~~~~~~~-------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A---- 352 (806)
+. .-+... ...|+...-+.+++.--..+++.-+..|.. ++.++|+|+..|...++-.+.
T Consensus 821 d~---d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g~~-~~~~hnalakiyid~n~npe~fL~~ 896 (1630)
T 1xi4_A 821 DV---DCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCE-EPATHNALAKIYIDSNNNPERFLRE 896 (1630)
T ss_pred cC---CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhccCCCHHHHhhc
Confidence 11 011111 233334444455555555666766777754 788888888777754432111
Q ss_pred ---------------------HHHHHH------Hh----hCCC----------CCChhcH--------------------
Q 037510 353 ---------------------KRVLRC------MG----DWNL----------RPDSFSF-------------------- 371 (806)
Q Consensus 353 ---------------------~~~~~~------~~----~~~~----------~~~~~~~-------------------- 371 (806)
.-.|++ +. +.++ +.|...|
T Consensus 897 n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a 976 (1630)
T 1xi4_A 897 NPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQ 976 (1630)
T ss_pred cCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 111100 00 0000 0011111
Q ss_pred ------------HHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 372 ------------NTLVDGYCRECDMTEAFRLCAEMLRQGI--EPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPN 437 (806)
Q Consensus 372 ------------~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 437 (806)
...+++|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +..+..++..+.-.
T Consensus 977 ~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~------ 1049 (1630)
T 1xi4_A 977 TALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN------ 1049 (1630)
T ss_pred hhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh------
Confidence 2223334444444455555444442210 00111222233222222 22222222222211
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037510 438 EVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDG 517 (806)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 517 (806)
.....+...+...|.+++|..+|++... .....+.++ ...+++++|.++.++. .+..+|..+..+
T Consensus 1050 -~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKA 1114 (1630)
T 1xi4_A 1050 -YDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKA 1114 (1630)
T ss_pred -ccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHH
Confidence 0112244555566666666666666421 111112222 1445666666665533 235566666677
Q ss_pred HHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 037510 518 YCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGW 597 (806)
Q Consensus 518 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 597 (806)
+...|++++|...|.+. .+...|..++..+.+.|++++|.+.+...++.. +++...+.++.+|
T Consensus 1115 ql~~G~~kEAIdsYiKA---------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA---------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 1177 (1630)
T ss_pred HHhCCCHHHHHHHHHhc---------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHH
Confidence 77777777776666432 445556666666777777777777766655542 2322233466666
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhH
Q 037510 598 CDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLD 677 (806)
Q Consensus 598 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 677 (806)
++.+++++ ++-| ++ .++...+..++..|...|++++|..+|..+.
T Consensus 1178 AKl~rlee-le~f---I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------------------------- 1222 (1630)
T 1xi4_A 1178 AKTNRLAE-LEEF---IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------------------------- 1222 (1630)
T ss_pred HhhcCHHH-HHHH---Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh----------------------------
Confidence 66666653 2222 21 2344555566666666777777776666641
Q ss_pred HhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 678 ESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN 757 (806)
Q Consensus 678 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 757 (806)
.|..++.+|++.|++++|++.+++. -+..+|..+..+|...|++..|...... +..+
T Consensus 1223 ------------ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~ 1279 (1630)
T 1xi4_A 1223 ------------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVH 1279 (1630)
T ss_pred ------------HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcC
Confidence 5566666666666666666666655 2235666666666666666555554432 2334
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 758 IATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 758 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
+..+..++..|.+.|.+++|+.+++....
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 45555666666777777777777766553
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=1.8e-16 Score=177.45 Aligned_cols=576 Identities=12% Similarity=0.124 Sum_probs=386.7
Q ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCC--CcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHH
Q 037510 119 AFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGC--IPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCS 196 (806)
Q Consensus 119 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 196 (806)
..+|+-....++.|...|.+.+|++++++..-.+. ..+....+.++....+. +..+..+...+.... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 45677788999999999999999999999984321 13456778888777777 556666666665421 1 33
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 037510 197 IVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQH 276 (806)
Q Consensus 197 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 276 (806)
.+...+...|.+++|..+|++.. -.....+.++ ...|++++|.++.++.. +..+|..+..++.+.|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 47778889999999999999963 1222233333 37889999999998662 5789999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHH
Q 037510 277 KMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVL 356 (806)
Q Consensus 277 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 356 (806)
++++|++.|.+. .|...|..++..+.+.|++++|.+.|....+.. +++...+.++.+|++.+++++.....
T Consensus 1120 ~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 999999999664 267788999999999999999999999888764 34444556999999999988644443
Q ss_pred HHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037510 357 RCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCP 436 (806)
Q Consensus 357 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 436 (806)
+ .++...|..+...|...|++++|...|... ..|..+...+++.|+++.|.+.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 2 456677888999999999999999999985 37999999999999999999999986 3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037510 437 NEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSD 516 (806)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 516 (806)
+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++...... +.....|+-+..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 66899999999999999999999876543 356677799999999999999999999887765 445567777777
Q ss_pred HHHh--cCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-----------CCC
Q 037510 517 GYCK--VGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQT-----------MGL 583 (806)
Q Consensus 517 ~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~g~ 583 (806)
.+++ .++..++.++|..- .-.|.+. ....+...|..++..|.+.|+++.|....-+-.. ...
T Consensus 1323 LyaKy~peklmEhlk~f~~r---ini~k~~--r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k 1397 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSR---VNIPKVL--RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK 1397 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHh---cccchHh--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc
Confidence 7665 34555566655521 1111000 0113567789999999999999999843322110 011
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhh
Q 037510 584 YPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASS 663 (806)
Q Consensus 584 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 663 (806)
..|+..|...+..|. +....++.-+...+...+.+ ...+..+.+.|.+..+..+++.....+...=. -...
T Consensus 1398 v~n~elyykai~Fyl--~~~P~~lndLl~~l~~rlD~-----~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vn--eal~ 1468 (1630)
T 1xi4_A 1398 VANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVN--ESLN 1468 (1630)
T ss_pred cccHHHHHHHHHHHH--hhChHHHHHHHHHhhhcCCh-----HHHHHHHHHcCChHHhHHHHHHHHHhcchhhh--HHHH
Confidence 345666666666665 23333333333333221111 33445555666666666666555433211100 0000
Q ss_pred hhhhh---HHHHHhhhHHhh--------hcCCCCChHHHHHHH-HHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHH
Q 037510 664 AINVD---AQKIAMSLDESA--------RSLCVPNYVVYNIVI-AGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIH 731 (806)
Q Consensus 664 ~~~~~---~~~~~~~~~~~~--------~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 731 (806)
+..++ ....+..++... ...-+....-+.-+. ..|.+.|++++|.+++.+-.- |.--+.
T Consensus 1469 el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l---------~~dAm~ 1539 (1630)
T 1xi4_A 1469 NLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSL---------YKDAMQ 1539 (1630)
T ss_pred HHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccC---------HHHHHH
Confidence 11111 111111111100 000011111122233 334455888888888776432 445667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHH
Q 037510 732 GYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 779 (806)
...++|+.+.+.+++.-..+. -+...|.+.+..|...-+.+-+++
T Consensus 1540 ~a~~S~d~e~~e~ll~~F~~~---~~~E~f~a~Ly~cy~l~~pd~vle 1584 (1630)
T 1xi4_A 1540 YASESKDTELAEELLQWFLQE---EKRECFGACLFTCYDLLRPDVVLE 1584 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCCchHHHH
Confidence 778888888888888887774 345566666666665555555554
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.4e-18 Score=180.14 Aligned_cols=327 Identities=15% Similarity=0.114 Sum_probs=221.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Q 037510 405 TYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLC 484 (806)
Q Consensus 405 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 484 (806)
.+..+...+...|++++|...|+.+++.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 34445555555555555555555555532 2234455555555555555555555555555432 223444455555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHH
Q 037510 485 KMGKMTEAQKIFDKMKELGCLP----NIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLIS 560 (806)
Q Consensus 485 ~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 560 (806)
..|++++|...++++.+.. | +...+..+..... ...+..+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~--------------------------------~~~~~~~a~ 128 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE--------------------------------MQRLRSQAL 128 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH--------------------------------HHHHHHHHH
Confidence 5555555555555555432 2 1111111111100 001223467
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037510 561 VAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDE 640 (806)
Q Consensus 561 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 640 (806)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++++.. +.+...+..++..+...|++++
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 8889999999999999998863 4467788899999999999999999999999863 5578899999999999999999
Q ss_pred HHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 037510 641 ANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFS 720 (806)
Q Consensus 641 A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 720 (806)
|...++++.+..+....... ....+ ........++..+.+.|++++|...++++.+ ..
T Consensus 207 A~~~~~~a~~~~~~~~~~~~-----------~~~~~---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~ 264 (359)
T 3ieg_A 207 SLSEVRECLKLDQDHKRCFA-----------HYKQV---------KKLNKLIESAEELIRDGRYTDATSKYESVMK--TE 264 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHH-----------HHHHH---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHhhCccchHHHH-----------HHHHH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence 99999999876533110000 00000 0011222447789999999999999999999 55
Q ss_pred CCHH-----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 721 PDNF-----TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 721 p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
|+.. .+..++.+|...|++++|++.++++++. .| ++.++..++.+|.+.|++++|...++++.+ +.|+..
T Consensus 265 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~ 340 (359)
T 3ieg_A 265 PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQ 340 (359)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCh
Confidence 6643 3566889999999999999999999984 45 778999999999999999999999999998 678744
Q ss_pred h
Q 037510 795 T 795 (806)
Q Consensus 795 ~ 795 (806)
.
T Consensus 341 ~ 341 (359)
T 3ieg_A 341 Q 341 (359)
T ss_dssp H
T ss_pred H
Confidence 4
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=3.3e-17 Score=177.04 Aligned_cols=382 Identities=13% Similarity=0.037 Sum_probs=252.4
Q ss_pred ChhHHHHHHHHHHh----cCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCc
Q 037510 332 NLLICNSLINGYCK----LGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCR----ECDMTEAFRLCAEMLRQGIEPSV 403 (806)
Q Consensus 332 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~ 403 (806)
++..+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44555555555555 566666666666655543 34455555555655 566666666666666543 34
Q ss_pred chHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCcHHH
Q 037510 404 VTYNTLLKGLCR----VGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFN----KGDFYGAVKLWNNILARGFYKNTIT 475 (806)
Q Consensus 404 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 475 (806)
..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|++.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 455555555555 566667777776666653 45556666666665 667777777777776653 5556
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcccChhhhhcC
Q 037510 476 FNTMIKGLCK----MGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCK----VGNLEEAFKIKNLMERREILPSMEKEA 547 (806)
Q Consensus 476 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 547 (806)
+..+...|.. .++.++|..+|++..+.+ +...+..+...|.. .+++++|...++.. ...
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a---------~~~- 252 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS---------AEQ- 252 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---------HTT-
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH---------HHC-
Confidence 6666666666 677777777777777654 55666666666665 67777777777765 222
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHcc-----CChHHHHHHHHHHHHcCC
Q 037510 548 IVPSIDMYNYLISVAFK----SRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDA-----GMLNKAFKAYFDMIEKGF 618 (806)
Q Consensus 548 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~ 618 (806)
.+...+..+...+.. .++.++|.+.|++..+.| +...+..+...|... +++++|+..|++..+.|
T Consensus 253 --~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~- 326 (490)
T 2xm6_A 253 --GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG- 326 (490)
T ss_dssp --TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-
T ss_pred --CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-
Confidence 234455566666666 677888888888877654 455666667777665 78888888888888764
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHH
Q 037510 619 SPNVAICSKLVSTLCRLG---KIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVI 695 (806)
Q Consensus 619 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 695 (806)
+...+..+...|...| ++++|..++++..+.+ ++..+..|.
T Consensus 327 --~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----------------------------------~~~a~~~Lg 370 (490)
T 2xm6_A 327 --DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----------------------------------EKAAQFNLG 370 (490)
T ss_dssp --CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----------------------------------CHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----------------------------------CHHHHHHHH
Confidence 4566777777777756 7888888888888764 556788888
Q ss_pred HHHHh----cCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-C-ChhcHHHHH
Q 037510 696 AGICK----SGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAA----VGDINEAFNLRDEMLKINLV-P-NIATYNSLV 765 (806)
Q Consensus 696 ~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~ 765 (806)
..|.. .+++++|...|++..+.| +..++..|+..|.. .+++++|...|+++.+.+.. | ++.....|.
T Consensus 371 ~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~ 447 (490)
T 2xm6_A 371 NALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEK 447 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHH
Confidence 88887 788999999999988854 45677888888887 78999999999998886533 2 334444444
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 037510 766 SGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~m~ 785 (806)
..+.. +.++|.+...+..
T Consensus 448 ~~~~~--~~~~a~~~a~~~~ 465 (490)
T 2xm6_A 448 KLTAK--QLQQAELLSQQYI 465 (490)
T ss_dssp TSCHH--HHHHHHHHHHHHH
T ss_pred hcCHh--HHHHHHHHHHHHH
Confidence 33332 2344444444433
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=1.2e-17 Score=173.06 Aligned_cols=331 Identities=12% Similarity=0.030 Sum_probs=202.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 037510 156 SLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLID 235 (806)
Q Consensus 156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 235 (806)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45567777777888888888888888777643 2346677777777777788888888877777653 335667777777
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCC
Q 037510 236 GYVSLGDLNGAKRVLEWTCEKGIS--RTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGK 313 (806)
Q Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 313 (806)
.+...|++++|...++++.+..+. .+...+..+...+. ...+..+...+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccC
Confidence 777777777777777777764320 12333333311000 0011122344455555
Q ss_pred hHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 314 VDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAE 393 (806)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 393 (806)
+++|...++++.+..+ .+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|.+.+++
T Consensus 136 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555554432 244455555555555555555555555555442 33445555555555555555555555555
Q ss_pred HHHCCCCCCc-chH------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhH
Q 037510 394 MLRQGIEPSV-VTY------------NTLLKGLCRVGDVDEALHLWLMMLKRCVCPNE----VGYCTLLDILFNKGDFYG 456 (806)
Q Consensus 394 m~~~g~~~~~-~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 456 (806)
..+.. |+. ..+ ..+...+.+.|++++|...++++.+.... +. ..+..+...+.+.|++++
T Consensus 214 a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 214 CLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHH
Confidence 55432 221 111 12355677788888888888887775322 22 234456778888888888
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 457 AVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYC 519 (806)
Q Consensus 457 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (806)
|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..+..
T Consensus 291 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 291 AIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 888888887763 4467778888888888888888888888888764 334555655555443
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=2e-16 Score=170.85 Aligned_cols=366 Identities=14% Similarity=0.012 Sum_probs=308.3
Q ss_pred HHHHHHHHhhCCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh----cCCHHHHH
Q 037510 352 AKRVLRCMGDWNLRPDSFSFNTLVDGYCR----ECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCR----VGDVDEAL 423 (806)
Q Consensus 352 A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~ 423 (806)
+...++...+.| +...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .++.++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 455555555533 67778888888887 899999999999998874 56778888888988 89999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh----cCCHHHHHHH
Q 037510 424 HLWLMMLKRCVCPNEVGYCTLLDILFN----KGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCK----MGKMTEAQKI 495 (806)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~ 495 (806)
..|++..+.| +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .++.++|...
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998874 66778888889988 889999999999999875 56677788888877 7899999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHh----cCC
Q 037510 496 FDKMKELGCLPNIITYRTLSDGYCK----VGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFK----SRE 567 (806)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 567 (806)
|++..+.| +...+..+...|.. .+++++|.+.|++. ... .+...+..+...|.. .++
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a---------~~~---~~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKS---------ATS---GDELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---------HHT---TCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH---------HHC---CCHHHHHHHHHHHHcCCCCCCC
Confidence 99999875 78888899999988 89999999999987 333 355677788888886 789
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCH
Q 037510 568 LTSLVDLLAEMQTMGLYPNIVTYGALISGWCD----AGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRL-----GKI 638 (806)
Q Consensus 568 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~ 638 (806)
.++|...|++..+.| +...+..+...|.. .++.++|++.|++..+.| +...+..+...|... +++
T Consensus 239 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCH
Confidence 999999999998864 45667777777776 899999999999998764 566778888888887 899
Q ss_pred HHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC---ChhhHHHHHHHHH
Q 037510 639 DEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG---NVTDARRIFSALL 715 (806)
Q Consensus 639 ~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 715 (806)
++|...+++..+.+ +...+..+...|...| ++++|++.|++..
T Consensus 313 ~~A~~~~~~a~~~~----------------------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 313 EQAISWYTKSAEQG----------------------------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC----------------------------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 99999999998875 4457888888888766 7899999999999
Q ss_pred HCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 037510 716 LTGFSPDNFTYSTLIHGYAA----VGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCN----SGELDRAKRLFCKLRQK 787 (806)
Q Consensus 716 ~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~ 787 (806)
+. .+..++..|+..|.. .+++++|++.|+++.+.| ++..+..|...|.+ .++.++|..+|++..+.
T Consensus 359 ~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 359 AK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 95 356788899999998 899999999999999865 57788889999998 89999999999999986
Q ss_pred CCC
Q 037510 788 GLT 790 (806)
Q Consensus 788 g~~ 790 (806)
|..
T Consensus 433 ~~~ 435 (490)
T 2xm6_A 433 DMN 435 (490)
T ss_dssp HCC
T ss_pred CCC
Confidence 543
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=6.4e-18 Score=172.83 Aligned_cols=299 Identities=12% Similarity=0.012 Sum_probs=218.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 436 PNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLS 515 (806)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 515 (806)
.+...+..++..+...|++++|+.+|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344555666666666677777777777666553 3344555556666777777777777777777654 34566677777
Q ss_pred HHHHhcC-ChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 037510 516 DGYCKVG-NLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALI 594 (806)
Q Consensus 516 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~ 594 (806)
..+...| ++++|...++... .. .+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~---------~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 166 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKAT---------TL-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIG 166 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHH---------TT-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHH---------Hh-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHH
Confidence 7777777 7777777777662 11 12245667777777788888888888888777653 22455677788
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHh
Q 037510 595 SGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAM 674 (806)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 674 (806)
..+...|++++|.+.++++++.. +.+...+..++..+...|++++|...++++.+......
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------------ 227 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG------------------ 227 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc------------------
Confidence 88899999999999999998763 45678888999999999999999999999886421100
Q ss_pred hhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 675 SLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKIN 753 (806)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (806)
.....+.+..++..++.+|...|++++|...++++.+ ..|+. .+|..++.+|...|++++|.+.++++++
T Consensus 228 -----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-- 298 (330)
T 3hym_B 228 -----NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV--LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG-- 298 (330)
T ss_dssp -----CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--
T ss_pred -----ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--
Confidence 0000123467899999999999999999999999998 56765 5899999999999999999999999988
Q ss_pred CCC-ChhcHHHHHHHH-HhcCCHH
Q 037510 754 LVP-NIATYNSLVSGL-CNSGELD 775 (806)
Q Consensus 754 ~~p-~~~~~~~l~~~~-~~~g~~~ 775 (806)
+.| +...+..+..++ ...|+.+
T Consensus 299 ~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 299 LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred cCCCchHHHHHHHHHHHHHhCchh
Confidence 556 677888888888 5666643
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.9e-17 Score=167.95 Aligned_cols=287 Identities=13% Similarity=0.020 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 037510 229 TYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGY 308 (806)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 308 (806)
.+..+...+...|++++|.++|+++.+..+ .+...+..++..+...|++++|..+++++.+. .+.+...+..+...+
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAVGCYY 100 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHH
Confidence 344444444444555555555555444332 23334444444445555555555555554443 122334444444555
Q ss_pred HhcC-ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHH
Q 037510 309 CKVG-KVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEA 387 (806)
Q Consensus 309 ~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 387 (806)
...| ++++|...|+++.+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence 5555 555555555555444321 34445555555555555555555555544432 22334444455555555555555
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCChhhHHHHHHHHHhcCChhHHHH
Q 037510 388 FRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRC--------VCPNEVGYCTLLDILFNKGDFYGAVK 459 (806)
Q Consensus 388 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~ 459 (806)
.+.+++..+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+...+...|++++|..
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 55555555432 1233445555555555556666655555555421 12234566666667777777777777
Q ss_pred HHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC
Q 037510 460 LWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGY-CKVGN 523 (806)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 523 (806)
.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++ ...|+
T Consensus 258 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 258 YHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 777666653 3355666777777777777777777777776654 34566666666665 33444
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=6.7e-16 Score=168.62 Aligned_cols=429 Identities=9% Similarity=0.051 Sum_probs=244.5
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 037510 250 LEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGL 329 (806)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 329 (806)
|++..+..+ -+..+|..++. +.+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~- 76 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV- 76 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence 455555543 47788988888 47889999999999999876 55577788999999999999999999999998864
Q ss_pred CCChhHHHHHHHHH-HhcCCHhHHHH----HHHHHhh-CCCCC-ChhcHHHHHHHHHh---------cCCHHHHHHHHHH
Q 037510 330 EMNLLICNSLINGY-CKLGQVCEAKR----VLRCMGD-WNLRP-DSFSFNTLVDGYCR---------ECDMTEAFRLCAE 393 (806)
Q Consensus 330 ~~~~~~~~~li~~~-~~~g~~~~A~~----~~~~~~~-~~~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~ 393 (806)
|+...|...+... ...|+.++|.+ +|+.... .|..| +...|...+....+ .|++++|..+|++
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 4666777766533 35677777665 6665543 24333 45667777665544 5778888888888
Q ss_pred HHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH------HHHC
Q 037510 394 MLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNN------ILAR 467 (806)
Q Consensus 394 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------~~~~ 467 (806)
.++. |... ...+...+.. ++... +..+...++. .+.+++..|..++.+ ..+.
T Consensus 156 al~~---P~~~-~~~~~~~~~~---~e~~~-------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~ 213 (530)
T 2ooe_A 156 GCVN---PMIN-IEQLWRDYNK---YEEGI-------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDR 213 (530)
T ss_dssp HTTS---CCTT-HHHHHHHHHH---HHHHH-------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHhc---hhhh-HHHHHHHHHH---HHHhh-------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 8762 3221 1111111111 00000 0000001110 123445566655554 2222
Q ss_pred C---CCCc--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------c
Q 037510 468 G---FYKN--------TITFNTMIKGLCKM----GKM----TEAQKIFDKMKELGCLPNIITYRTLSDGYCK-------V 521 (806)
Q Consensus 468 ~---~~~~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~ 521 (806)
. ++|+ ...|...+...... ++. +.+..+|+++.... +.+...|...+..+.+ .
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~ 292 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEK 292 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhc
Confidence 1 2332 24555555433322 222 47778899888764 5578888888888775 6
Q ss_pred CChH-------HHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-H-hHHHH
Q 037510 522 GNLE-------EAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN-I-VTYGA 592 (806)
Q Consensus 522 g~~~-------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~-~~~~~ 592 (806)
|+++ +|..+++.. ...-.+.+...+..++..+.+.|++++|..+|+++.+. .|+ . ..|..
T Consensus 293 g~~~~a~~~~~~A~~~~~~A---------l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 361 (530)
T 2ooe_A 293 GDMNNAKLFSDEAANIYERA---------ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQ 361 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHHH---------TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHH---------HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHH
Confidence 8877 777777765 22112234566666666666666777777766666664 333 1 35555
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHH
Q 037510 593 LISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVST-LCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQK 671 (806)
Q Consensus 593 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 671 (806)
++..+.+.|++++|.++|+++++.. +.+...+...+.. +...|+.++|..+|++.++..+
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p------------------ 422 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG------------------ 422 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC------------------
Confidence 5555555666666666666665531 1122222221111 2235555666666655554321
Q ss_pred HHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC-CCCC--HHhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 672 IAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG-FSPD--NFTYSTLIHGYAAVGDINEAFNLRDE 748 (806)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 748 (806)
.++..|..++..+.+.|+.++|..+|++.++.+ ..|+ ...|...+......|+.+.+..++++
T Consensus 423 --------------~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 423 --------------DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp --------------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 134455555555555555556666665555531 1222 12444445555555555555555555
Q ss_pred HHH
Q 037510 749 MLK 751 (806)
Q Consensus 749 ~~~ 751 (806)
+.+
T Consensus 489 ~~~ 491 (530)
T 2ooe_A 489 RFT 491 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=7.5e-16 Score=168.25 Aligned_cols=431 Identities=11% Similarity=-0.007 Sum_probs=287.8
Q ss_pred HHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCC
Q 037510 285 LRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNL 364 (806)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 364 (806)
|++..+. .+-|...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++....
T Consensus 2 le~al~~--~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-- 75 (530)
T 2ooe_A 2 AEKKLEE--NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-- 75 (530)
T ss_dssp HHHHHHH--CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--
T ss_pred hhhHhhh--CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Confidence 3444443 2446778888887 477889999999999988763 346778888888888899999999999988876
Q ss_pred CCChhcHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCCC-cchHHHHHHHHHh---------cCCHHHHHHHHHH
Q 037510 365 RPDSFSFNTLVDGY-CRECDMTEAFR----LCAEMLRQ-GIEPS-VVTYNTLLKGLCR---------VGDVDEALHLWLM 428 (806)
Q Consensus 365 ~~~~~~~~~li~~~-~~~g~~~~a~~----~~~~m~~~-g~~~~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~ 428 (806)
.|+...|..++... ...|+.++|.+ +|++.+.. |..|+ ...|...+....+ .|+++.|..+|++
T Consensus 76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 36777777666533 34566666554 66665543 44443 3455555554443 5677778888877
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHc
Q 037510 429 MLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKM------KEL 502 (806)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~------~~~ 502 (806)
.+.....+....|..........|. .+...++. ...+++..|..++... .+.
T Consensus 156 al~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~ 213 (530)
T 2ooe_A 156 GCVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDR 213 (530)
T ss_dssp HTTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 7762111001222221111000000 01111111 1234566676666552 222
Q ss_pred C---CCCC--------HHHHHHHHHHHHhc----CCh----HHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHH
Q 037510 503 G---CLPN--------IITYRTLSDGYCKV----GNL----EEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAF 563 (806)
Q Consensus 503 ~---~~~~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 563 (806)
. ++|+ ...|...+...... ++. +.+..+|+.. ... .+.+...|..++..+.
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a---------l~~-~p~~~~~w~~~~~~~~ 283 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC---------LLV-LGHHPDIWYEAAQYLE 283 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH---------HHH-HTTCHHHHHHHHHHHH
T ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH---------HHh-CCCCHHHHHHHHHHHH
Confidence 1 2444 24555554433222 222 3666777776 222 2346778888888777
Q ss_pred h-------cCCHh-------HHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-H-HHHHH
Q 037510 564 K-------SRELT-------SLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN-V-AICSK 627 (806)
Q Consensus 564 ~-------~~~~~-------~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~ 627 (806)
+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++. .|+ . ..|..
T Consensus 284 ~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 361 (530)
T 2ooe_A 284 QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQ 361 (530)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHH
T ss_pred HhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHH
Confidence 5 78887 89999999886322345778899999999999999999999999985 453 3 58888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHH-HHhcCChhh
Q 037510 628 LVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAG-ICKSGNVTD 706 (806)
Q Consensus 628 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 706 (806)
++..+.+.|++++|..+|+++++.... +...|...+.. +...|+.++
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~~~--------------------------------~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDART--------------------------------RHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTC--------------------------------CTHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccCC--------------------------------chHHHHHHHHHHHHHcCChhH
Confidence 899899999999999999999876321 22233322222 346899999
Q ss_pred HHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC--hhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 707 ARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKIN-LVPN--IATYNSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 707 A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 782 (806)
|..+|++.++ ..|+. ..|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+.++.+
T Consensus 410 A~~~~e~al~--~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 410 AFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHH--HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHH--HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998 56764 589999999999999999999999999853 1222 2367777777888999999999999
Q ss_pred HHHHCCCCC
Q 037510 783 KLRQKGLTP 791 (806)
Q Consensus 783 ~m~~~g~~p 791 (806)
++.+ ..|
T Consensus 488 r~~~--~~p 494 (530)
T 2ooe_A 488 RRFT--AFR 494 (530)
T ss_dssp HHHH--HTH
T ss_pred HHHH--HCc
Confidence 9877 455
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=8.2e-18 Score=175.00 Aligned_cols=305 Identities=12% Similarity=0.027 Sum_probs=188.9
Q ss_pred HHHhcCCHHHHHH-HHHHHHHcCCC-C--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcC
Q 037510 412 GLCRVGDVDEALH-LWLMMLKRCVC-P--NEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMG 487 (806)
Q Consensus 412 ~~~~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 487 (806)
++...|++++|.. .+++....... | +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3444555566555 55544332110 1 23345555555555555555555555555542 334445555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCC
Q 037510 488 KMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRE 567 (806)
Q Consensus 488 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 567 (806)
++++|...++++.+.. +.+..++..+...+...|++++|...++.+. ... +.+...+..+...
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~~~~~~~~~~------ 175 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWL---------RYT-PAYAHLVTPAEEG------ 175 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HTS-TTTGGGCC-----------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhC-cCcHHHHHHHHHH------
Confidence 5555555555555543 3344555555555555555555555555441 111 0011111000000
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037510 568 LTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSP-NVAICSKLVSTLCRLGKIDEANIFLQ 646 (806)
Q Consensus 568 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 646 (806)
... ..+ ...+.. +..+...|++++|...++++++..... +..++..++..+...|++++|...++
T Consensus 176 -----------~~~-~~~-~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 241 (368)
T 1fch_A 176 -----------AGG-AGL-GPSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241 (368)
T ss_dssp -----------------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------hhh-hcc-cHHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 000 000 001112 233338899999999999999864221 58889999999999999999999999
Q ss_pred HHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-Hh
Q 037510 647 KMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FT 725 (806)
Q Consensus 647 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~ 725 (806)
++++..+ .+..++..++.++...|++++|+..|+++++ ..|+. .+
T Consensus 242 ~al~~~~--------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~ 287 (368)
T 1fch_A 242 AALSVRP--------------------------------NDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRS 287 (368)
T ss_dssp HHHHHCT--------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHhCc--------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHH
Confidence 9987642 2567899999999999999999999999998 56764 58
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------------hhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 726 YSTLIHGYAAVGDINEAFNLRDEMLKINLVPN------------IATYNSLVSGLCNSGELDRAKRLFCKL 784 (806)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~m 784 (806)
+..++.+|.+.|++++|+..|+++++. .|+ ..+|..++.+|.+.|+.++|..++++.
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 999999999999999999999999883 232 578999999999999999999987753
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=3.9e-17 Score=169.84 Aligned_cols=305 Identities=12% Similarity=-0.036 Sum_probs=163.5
Q ss_pred HHHcCChhhHHH-HHHHhhhcCCC---cChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 037510 132 YAQKGMLKNALH-VFDNMGKYGCI---PSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKS 207 (806)
Q Consensus 132 ~~~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 207 (806)
+...|++++|++ .|+...+.... .+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445578888888 88876654322 135578888888888899999999888888764 3366778888888888888
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 208 MEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRR 287 (806)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 287 (806)
+++|...++++.+.. +.+..++..+...|...|++++|...++++....+. +...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence 888888888888765 446778888888888888888888888888876532 22222211000 00
Q ss_pred HHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCC
Q 037510 288 MKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEM-NLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRP 366 (806)
Q Consensus 288 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 366 (806)
...+. ..+..+ ..+...|++++|...++++.+..+.. +..++..+...|...|++++|+..|++..+.. +.
T Consensus 178 -----~~~~~-~~~~~~-~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -----GAGLG-PSKRIL-GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTT-HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -----hhccc-HHHHHH-HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 00000 000011 11114444445555554444432211 24444444555555555555555555444432 22
Q ss_pred ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------C
Q 037510 367 DSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVC----------P 436 (806)
Q Consensus 367 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------~ 436 (806)
+..+|..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...+++++..... .
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 34444555555555555555555555554432 113344455555555555555555555555442111 0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHH
Q 037510 437 NEVGYCTLLDILFNKGDFYGAVKLWN 462 (806)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 462 (806)
...+|..+..+|...|++++|..+++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 14556666666666666666665554
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=3.2e-17 Score=170.17 Aligned_cols=262 Identities=11% Similarity=0.042 Sum_probs=179.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 440 GYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYC 519 (806)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (806)
.+..+...+.+.|++++|+..|+++++.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..++.++.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 35555555555555555555555555442 2344455555555555555555555555555443 233445555555555
Q ss_pred hcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC---------CCHhHH
Q 037510 520 KVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLY---------PNIVTY 590 (806)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~---------p~~~~~ 590 (806)
..|++++|...++. +.+.... .....+
T Consensus 145 ~~g~~~~A~~~~~~--------------------------------------------al~~~p~~~~~~~~~~~~~~~~ 180 (365)
T 4eqf_A 145 NTSHQQDACEALKN--------------------------------------------WIKQNPKYKYLVKNKKGSPGLT 180 (365)
T ss_dssp HTTCHHHHHHHHHH--------------------------------------------HHHHCHHHHCC-----------
T ss_pred ccccHHHHHHHHHH--------------------------------------------HHHhCccchHHHhhhccchHHH
Confidence 55555555555544 4432100 112234
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhH
Q 037510 591 GALISGWCDAGMLNKAFKAYFDMIEKGFS-PNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDA 669 (806)
Q Consensus 591 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 669 (806)
..+...+...|++++|.+.++++++.... ++..++..++..+...|++++|...++++++..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---------------- 244 (365)
T 4eqf_A 181 RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP---------------- 244 (365)
T ss_dssp --------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------------
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----------------
Confidence 45677888999999999999999986422 1688999999999999999999999999987642
Q ss_pred HHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 670 QKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDE 748 (806)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 748 (806)
.+..+|..++.+|...|++++|+..|+++++ ..|+. .+|..++.+|...|++++|+..|++
T Consensus 245 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 306 (365)
T 4eqf_A 245 ----------------EDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYREAVSNFLT 306 (365)
T ss_dssp ----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred ----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3677999999999999999999999999999 66774 5899999999999999999999999
Q ss_pred HHHcCCCC-------------ChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 749 MLKINLVP-------------NIATYNSLVSGLCNSGELDRAKRLFCK 783 (806)
Q Consensus 749 ~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 783 (806)
+++. .| +...+..|..++...|+.+.|.+..++
T Consensus 307 al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 307 ALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9983 22 257789999999999999999887665
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=9.5e-17 Score=161.46 Aligned_cols=347 Identities=15% Similarity=0.140 Sum_probs=142.6
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHH
Q 037510 239 SLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAI 318 (806)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 318 (806)
+.|++++|.++++++.. +.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 55667777777776632 236777777777777777777777432 35556777777777777777777
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037510 319 RVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQG 398 (806)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 398 (806)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 766655553 3346667777777777777777776663 356667777777777777777777777755
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHH
Q 037510 399 IEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNT 478 (806)
Q Consensus 399 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 478 (806)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHH
Confidence 35777777777777777777777776 256777777777777777777755544322 22333445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHhcccChhhhhcCCCC------
Q 037510 479 MIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKV--GNLEEAFKIKNLMERREILPSMEKEAIVP------ 550 (806)
Q Consensus 479 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~------ 550 (806)
++..|.+.|++++|..+++...... +.....|+.+.-.|++- ++..+.++.|. ..-.++|
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~-----------~~ini~k~~~~~~ 280 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW-----------SRVNIPKVLRAAE 280 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS-----------TTSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----------HHhcCcHHHHHHH
Confidence 7777888888888888888877655 45566777776666653 33334444332 1122222
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037510 551 SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVS 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 630 (806)
+...|..++..|.+.++++.|.... .+. +|+..--....+...+..+.+--.+...--++. .| ...+.|+.
T Consensus 281 ~~~~w~e~~~ly~~~~e~d~A~~tm---~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p--~~l~~ll~ 351 (449)
T 1b89_A 281 QAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLM 351 (449)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHH---HhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CH--HHHHHHHH
Confidence 4567888888999999999887753 333 233222233333344555544322222222222 22 23555666
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 037510 631 TLCRLGKIDEANIFLQKM 648 (806)
Q Consensus 631 ~~~~~g~~~~A~~~~~~~ 648 (806)
++...=+...+..+|++.
T Consensus 352 ~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 352 VLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp HHGGGCCHHHHHHHHHHT
T ss_pred HHHhccCcHHHHHHHHHc
Confidence 665556666666666554
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=1.7e-16 Score=164.69 Aligned_cols=274 Identities=10% Similarity=-0.013 Sum_probs=221.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 037510 402 SVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIK 481 (806)
Q Consensus 402 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 481 (806)
+...+..+...+.+.|++++|...|+++++.. +.+..++..+...+.+.|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45668899999999999999999999999873 3478899999999999999999999999999874 456888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHH
Q 037510 482 GLCKMGKMTEAQKIFDKMKELGCLPNII-TYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLIS 560 (806)
Q Consensus 482 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 560 (806)
.+...|++++|...++++.+.. |+.. .+..+. .....+..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~----------------------------------~~~~~~~~l~~ 185 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK----------------------------------GSPGLTRRMSK 185 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------------
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc----------------------------------cchHHHHHHHH
Confidence 9999999999999999998853 2211 111000 11233455677
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037510 561 VAFKSRELTSLVDLLAEMQTMGLY-PNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKID 639 (806)
Q Consensus 561 ~~~~~~~~~~a~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 639 (806)
.+...|++++|...++++.+.... ++..++..+...|...|++++|++.|+++++.. +.+..++..++.+|...|+++
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 264 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSE 264 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 888999999999999999986322 157889999999999999999999999999873 457889999999999999999
Q ss_pred HHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 037510 640 EANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGF 719 (806)
Q Consensus 640 ~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 719 (806)
+|...++++++..+ .+..++..++.+|...|++++|...|+++++ +
T Consensus 265 ~A~~~~~~al~~~p--------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~ 310 (365)
T 4eqf_A 265 EAVEAYTRALEIQP--------------------------------GFIRSRYNLGISCINLGAYREAVSNFLTALS--L 310 (365)
T ss_dssp HHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHhcCC--------------------------------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h
Confidence 99999999988642 2577899999999999999999999999998 3
Q ss_pred CCC-------------HHhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 720 SPD-------------NFTYSTLIHGYAAVGDINEAFNLRDE 748 (806)
Q Consensus 720 ~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~ 748 (806)
.|+ ..+|..+..++...|+.+.+....++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 311 QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 443 45899999999999999988877665
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=3.1e-16 Score=157.78 Aligned_cols=240 Identities=11% Similarity=0.089 Sum_probs=100.4
Q ss_pred HcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHH
Q 037510 134 QKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALD 213 (806)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 213 (806)
+.|++++|.+.++++. ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678999999999883 3359999999999999999999999653 577799999999999999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037510 214 FVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDD 293 (806)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 293 (806)
+++...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777764 4567888999999999999999988885 267779999999999999999999999876
Q ss_pred CCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHH
Q 037510 294 VIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNT 373 (806)
Q Consensus 294 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 373 (806)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..|+ -...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHH
Confidence 26899999999999999999999988 278899999999999999999966655432 2333 3456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhc
Q 037510 374 LVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRV 416 (806)
Q Consensus 374 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 416 (806)
++..|.+.|++++|..+++..+... +.....|+-+.-++++-
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc
Confidence 8888888999999999988887543 23345566666666654
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.8e-15 Score=161.64 Aligned_cols=396 Identities=12% Similarity=-0.002 Sum_probs=237.3
Q ss_pred CCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhC--------CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 037510 330 EMNLLICNSLINGYCKLGQVCEAKRVLRCMGDW--------NLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQ---- 397 (806)
Q Consensus 330 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 397 (806)
......||.|...+...|++++|++.|++..+. .-+....+|+.+...|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334567888888899999999999999876432 11233567888888888889999988888877542
Q ss_pred -C-CCC-CcchHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH---HHhcCChhHHHHHHHHHHHCCC
Q 037510 398 -G-IEP-SVVTYNTLLKGLCR--VGDVDEALHLWLMMLKRCVCPNEVGYCTLLDI---LFNKGDFYGAVKLWNNILARGF 469 (806)
Q Consensus 398 -g-~~~-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~ 469 (806)
+ ..+ ...++..+..++.. .+++++|+..|++.++.. +.+...+..+..+ +...++.++|++.+++.++..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 111 12345555545544 346788888888887753 2244445444444 344567778888888777653
Q ss_pred CCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhh
Q 037510 470 YKNTITFNTMIKGLCK----MGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEK 545 (806)
Q Consensus 470 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 545 (806)
+.+..++..+...+.. .|+.++|...+++..+.. +.+..++..+...+...|++++|...+++.. .
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al---------~ 275 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKAL---------E 275 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------H
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHH---------H
Confidence 3345555555444443 356777888888877765 4567777788888888888888888887662 2
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH
Q 037510 546 EAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAIC 625 (806)
Q Consensus 546 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 625 (806)
. .+.+..++..+...|...+.. ..... ...........+..++|...+++..+.. +.+...+
T Consensus 276 ~-~p~~~~~~~~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 337 (472)
T 4g1t_A 276 Y-IPNNAYLHCQIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVC 337 (472)
T ss_dssp H-STTCHHHHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCH
T ss_pred h-CCChHHHHHHHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhh
Confidence 1 123455566565555322111 00000 0000111112234678888888888763 3456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHH-HHHhcCCh
Q 037510 626 SKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIA-GICKSGNV 704 (806)
Q Consensus 626 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~ 704 (806)
..+...+...|++++|...|+++++..+.+.. ...++..++. .+...|+.
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSKELTPVA-----------------------------KQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH-----------------------------HHHHHHHHHHHHHHTSSCH
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhcCCCChH-----------------------------HHHHHHHHHHHHHHHCCCH
Confidence 88899999999999999999999887544310 0112333332 34577899
Q ss_pred hhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 705 TDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKL 784 (806)
Q Consensus 705 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 784 (806)
++|+..|++.++ +.|+....... ...+.+++++.++.+ +.++.+|..|+.+|...|++++|++.|++.
T Consensus 389 ~~Ai~~y~kal~--i~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 389 DKAIHHFIEGVK--INQKSREKEKM---------KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHHHHHHH--SCCCCHHHHHH---------HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHh--cCcccHHHHHH---------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999 77876543222 234556666766632 337789999999999999999999999998
Q ss_pred HHCC-CCCCHhhH
Q 037510 785 RQKG-LTPTVVTY 796 (806)
Q Consensus 785 ~~~g-~~p~~~~~ 796 (806)
++.| ..|+..+|
T Consensus 457 Le~~~~~p~a~~~ 469 (472)
T 4g1t_A 457 LESGSLIPSASSW 469 (472)
T ss_dssp -------------
T ss_pred HhcCCCCCcHhhc
Confidence 8743 34555444
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=4.6e-16 Score=158.73 Aligned_cols=277 Identities=9% Similarity=0.002 Sum_probs=185.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 440 GYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYC 519 (806)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (806)
.+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 44455555566666666666666655542 2344555555555555666666666666555543 334455555555555
Q ss_pred hcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHH-HH-HH
Q 037510 520 KVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGAL-IS-GW 597 (806)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l-~~-~~ 597 (806)
..|++++|.+.++.+. ... +.+...+..+.. ..|+......+ .. .+
T Consensus 101 ~~~~~~~A~~~~~~~~---------~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 101 NEHNANAALASLRAWL---------LSQ-PQYEQLGSVNLQ----------------------ADVDIDDLNVQSEDFFF 148 (327)
T ss_dssp HTTCHHHHHHHHHHHH---------HTS-TTTTTC------------------------------------------CCT
T ss_pred HcCCHHHHHHHHHHHH---------HhC-CccHHHHHHHhH----------------------HHHHHHHHHHHHHhHHH
Confidence 5555555555555441 110 000111110000 00111111112 22 36
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhH
Q 037510 598 CDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLD 677 (806)
Q Consensus 598 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 677 (806)
...|++++|.+.++++++.. +.+...+..++..+...|++++|...++++.+..+
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------------------------ 203 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP------------------------ 203 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------------
T ss_pred HHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------------------------
Confidence 78899999999999999864 44788899999999999999999999999987642
Q ss_pred HhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037510 678 ESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP 756 (806)
Q Consensus 678 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 756 (806)
.+..++..++..+...|++++|...|+++.+ ..|+ ..++..++.+|...|++++|++.++++++.....
T Consensus 204 --------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 204 --------DDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp --------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred --------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 2567899999999999999999999999998 5565 4589999999999999999999999999843111
Q ss_pred -----------ChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 757 -----------NIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 757 -----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
+...+..++.++.+.|+.++|..++++..
T Consensus 274 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 274 TTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred ccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 36788899999999999999999987643
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=6.5e-16 Score=153.17 Aligned_cols=275 Identities=13% Similarity=0.056 Sum_probs=205.7
Q ss_pred HHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh
Q 037510 129 LKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSM 208 (806)
Q Consensus 129 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 208 (806)
++-....|+++.|+..++......+.+.......+.++|...|+++.|+..++. .-+|+..++..+...+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 344567899999999998877654333345666778899999999999987754 2456777888888889999999
Q ss_pred hHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 209 EKALDFVKEMENLGFEL-NVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRR 287 (806)
Q Consensus 209 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 287 (806)
++|++.++++...+..| +...+..+...+...|++++|.+.+++ +.+..++..++..+.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998776434 566777778889999999999999987 36788888999999999999999999999
Q ss_pred HHhcCCCCCChHhH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCC
Q 037510 288 MKEEDDVIVDEYAY---GVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNL 364 (806)
Q Consensus 288 ~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 364 (806)
+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++..+..
T Consensus 156 ~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 156 MQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 98762 443211 122333445588999999999988873 4578888888889999999999999998887764
Q ss_pred CCChhcHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 037510 365 RPDSFSFNTLVDGYCRECDMTE-AFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEAL 423 (806)
Q Consensus 365 ~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 423 (806)
+.+..++..++..+...|+.++ +.++++++.+. .|+... +.+...+.+.++++.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLV 285 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHH
Confidence 5567788888888888888865 56788888775 344432 223334444444443
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=6.5e-16 Score=153.14 Aligned_cols=196 Identities=15% Similarity=0.069 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 551 SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN-IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLV 629 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 629 (806)
+...+..+...+...++.++|.+.++++...+..|+ ...+..+...+...|++++|++.+++ +.+...+..++
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~ 137 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHH
Confidence 334444444444444455555555555444433232 23333334444455555555554443 23444444455
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
..+.+.|++++|.+.++++.+.++.. . .......++..+...|++++|..
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~~p~~--~----------------------------~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQDEDA--T----------------------------LTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC--H----------------------------HHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCc--H----------------------------HHHHHHHHHHHHhCchHHHHHHH
Confidence 55555555555555555554432110 0 00000111222223345555555
Q ss_pred HHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 037510 710 IFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDR-AKRLFCKLRQ 786 (806)
Q Consensus 710 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 786 (806)
+|+++.+. .|+ ...|+.++.++.+.|++++|++.|+++++. .| ++.++..++..+...|+.++ +.++++++.+
T Consensus 188 ~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 188 IFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55555542 232 234455555555555555555555555542 23 34445555555555555443 3345555444
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=2.7e-15 Score=161.78 Aligned_cols=345 Identities=11% Similarity=-0.053 Sum_probs=183.2
Q ss_pred hHHHHHHHHHHhcCCHhHHHHHHHHHhhC-----C-C-CCChhcHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCC-c
Q 037510 334 LICNSLINGYCKLGQVCEAKRVLRCMGDW-----N-L-RPDSFSFNTLVDGYCR--ECDMTEAFRLCAEMLRQGIEPS-V 403 (806)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~-~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~~~-~ 403 (806)
.+|+.+...|...|++++|...+++..+. + . .....++..+..++.. .+++++|++.|++.++.. |+ .
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~ 172 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNP 172 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCH
Confidence 34445555555555555555555443221 0 0 0112233333333333 334666666666666542 32 2
Q ss_pred chHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCcHHHH
Q 037510 404 VTYNTLLKG---LCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFN----KGDFYGAVKLWNNILARGFYKNTITF 476 (806)
Q Consensus 404 ~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 476 (806)
..+..+... +...++.++|++.+++.++.. +.+..++..+...+.. .|++++|.+.+++..... +.+..++
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 233333332 233455666666666666542 2234444444443333 456677788877777653 4466677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHH
Q 037510 477 NTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYN 556 (806)
Q Consensus 477 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (806)
..+...+...|++++|...+++..+.. +.+..++..+...|...+....+... .
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~-------------------------~ 304 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRE-------------------------N 304 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC----------------------------
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHH-------------------------H
Confidence 778888888888888888888887764 44566666666655432211111000 0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHH-HHH
Q 037510 557 YLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNV--AICSKLVS-TLC 633 (806)
Q Consensus 557 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~-~~~ 633 (806)
.........+..+.|...++...+.. +.+...+..+...+...|++++|.+.|+++++....+.. ..+..+.. .+.
T Consensus 305 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~ 383 (472)
T 4g1t_A 305 GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY 383 (472)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 00001111223567777777776653 334566778888889999999999999998876433322 12333332 234
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 037510 634 RLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSA 713 (806)
Q Consensus 634 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 713 (806)
..|+.++|+..+++.++.... .... .+....+..++++
T Consensus 384 ~~~~~~~Ai~~y~kal~i~~~---------------------------------~~~~---------~~~~~~l~~~~~~ 421 (472)
T 4g1t_A 384 QMKCEDKAIHHFIEGVKINQK---------------------------------SREK---------EKMKDKLQKIAKM 421 (472)
T ss_dssp TSSCHHHHHHHHHHHHHSCCC---------------------------------CHHH---------HHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCcc---------------------------------cHHH---------HHHHHHHHHHHHH
Confidence 678999999999998876432 1111 1112334455566
Q ss_pred HHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 714 LLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKIN 753 (806)
Q Consensus 714 ~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (806)
.++ ..|+. .+|..|+.+|...|++++|++.|+++++.|
T Consensus 422 ~l~--~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 422 RLS--KNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHH--HCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 665 45654 488888888888888888888888888743
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=8.6e-16 Score=156.68 Aligned_cols=233 Identities=12% Similarity=-0.049 Sum_probs=114.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 037510 157 LRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDG 236 (806)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 236 (806)
...+..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3345555555666666666666666655532 2244555555566666666666666666665543 2345556666666
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCCCChHhH
Q 037510 237 YVSLGDLNGAKRVLEWTCEKGISRTAVTYTTL--------------TK-GYCKQHKMEEAENMLRRMKEEDDVIVDEYAY 301 (806)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 301 (806)
|...|++++|.+.++++.+... .+...+..+ .. .+...|++++|.+.++++.+. .+.+...+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHH
Confidence 6666666666666666665432 122222222 11 244444555555555554443 12234444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhc
Q 037510 302 GVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRE 381 (806)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 381 (806)
..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...|++..+.. +.+..++..+...+.+.
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 4444555555555555555555444321 133444444444445555555555554444332 22334444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 037510 382 CDMTEAFRLCAEMLR 396 (806)
Q Consensus 382 g~~~~a~~~~~~m~~ 396 (806)
|++++|.+.++++.+
T Consensus 254 g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIY 268 (327)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444443
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=9.5e-18 Score=181.93 Aligned_cols=119 Identities=12% Similarity=0.112 Sum_probs=111.3
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHH---CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLL---TGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNS 763 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 763 (806)
-..+||+||++||+.|++++|.++|++|.+ .|..||.+|||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 764 LVSGLCNSGEL-DRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 764 l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
||.+|++.|+. ++|.+++++|.++|+.||.++|++++.+..|
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 99999999985 7899999999999999999999987776654
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=9.3e-18 Score=182.00 Aligned_cols=151 Identities=11% Similarity=0.100 Sum_probs=110.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHH
Q 037510 156 SLRSCNCLLSNLVKNGEGYVALLVYEQMMR---VGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNS 232 (806)
Q Consensus 156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 232 (806)
...+||+||++|++.|+.++|..+|++|.+ .|+.||+.|||+||.+||+.|++++|.++|++|.+.|+.||+.|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345788888888888888888888877653 46788888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC------hHhHHHHH
Q 037510 233 LIDGYVSLGDL-NGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVD------EYAYGVLI 305 (806)
Q Consensus 233 li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~li 305 (806)
||.++|+.|+. ++|.++|++|.+.|+.||..+|++++.+..+. ..++..+++.. +..|+ ..+...|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P--~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKP--TFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCC--CCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCc--ccCCCCCCcccccchHHHH
Confidence 88888888874 67788888888888888888888877665443 34444444422 23333 44555666
Q ss_pred HHHHhcC
Q 037510 306 DGYCKVG 312 (806)
Q Consensus 306 ~~~~~~g 312 (806)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666554
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.5e-14 Score=141.57 Aligned_cols=238 Identities=12% Similarity=0.112 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC--CC
Q 037510 508 IITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL--YP 585 (806)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~p 585 (806)
...+..+...+...|++++|...++.. .... .+...+..+...+...|++++|.+.+++..+... .+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a---------~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 73 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKA---------WELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH---------HHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH---------HHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc
Confidence 457788889999999999999999988 4444 6778899999999999999999999999887421 11
Q ss_pred C----HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhh
Q 037510 586 N----IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMA 661 (806)
Q Consensus 586 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 661 (806)
+ ...+..+...+...|++++|.+.|+++++. .|+. ..+...|++++|...++++....+
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-------- 136 (258)
T 3uq3_A 74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-------- 136 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH--------
T ss_pred chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc--------
Confidence 2 577888899999999999999999999986 3443 346677889999999999987642
Q ss_pred hhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHH
Q 037510 662 SSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDIN 740 (806)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 740 (806)
.+..++..++..+...|++++|...|+++++ ..|+ ..+|..++.+|...|+++
T Consensus 137 ------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~ 190 (258)
T 3uq3_A 137 ------------------------EKAEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFP 190 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred ------------------------chHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHH
Confidence 2556888999999999999999999999999 5565 468999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHhhHHHHHH
Q 037510 741 EAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQK----GLTPTVVTYNILID 801 (806)
Q Consensus 741 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~ 801 (806)
+|+..++++++. .| +...+..++.++.+.|++++|...+++..+. +..|+.......+.
T Consensus 191 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 191 EAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 999999999984 45 5778999999999999999999999998762 12276555444443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=1.1e-14 Score=137.62 Aligned_cols=200 Identities=14% Similarity=0.047 Sum_probs=162.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037510 549 VPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKL 628 (806)
Q Consensus 549 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 628 (806)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..++++++.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4566788889999999999999999999999863 3467788899999999999999999999999874 4467889999
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHH
Q 037510 629 VSTLCRL-----------GKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAG 697 (806)
Q Consensus 629 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 697 (806)
..++... |++++|...++++++.++. +..++..++.+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--------------------------------~~~~~~~lg~~ 127 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--------------------------------YAPLHLQRGLV 127 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc--------------------------------cHHHHHHHHHH
Confidence 9999999 9999999999999987532 67789999999
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHH
Q 037510 698 ICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDR 776 (806)
Q Consensus 698 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 776 (806)
|...|++++|+..|+++++.. .+...+..++.+|...|++++|+..|+++++ +.| ++..+..++.++.+.|++++
T Consensus 128 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 128 YALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC------
T ss_pred HHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHH
Confidence 999999999999999999965 6667899999999999999999999999999 456 67788999999999999999
Q ss_pred HHHHHHHHHH
Q 037510 777 AKRLFCKLRQ 786 (806)
Q Consensus 777 A~~~~~~m~~ 786 (806)
|...+++...
T Consensus 204 A~~~~~~~~~ 213 (217)
T 2pl2_A 204 AARAAALEHH 213 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHhh
Confidence 9999988654
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=4.6e-14 Score=149.67 Aligned_cols=313 Identities=11% Similarity=-0.045 Sum_probs=149.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH---hHHHHHHHHHhhCCCCCChhcHHHHHHHHHhc
Q 037510 305 IDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQV---CEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRE 381 (806)
Q Consensus 305 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 381 (806)
...+.+.|++++|.++|++..+.| ++..+..|...|...|+. ++|...|++..+. +...+..+...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 344455555666666665555543 222333444444445555 5666666555532 344444455433333
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 037510 382 C-----DMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDE---ALHLWLMMLKRCVCPNEVGYCTLLDILFNKGD 453 (806)
Q Consensus 382 g-----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 453 (806)
+ ++++|+..|++..+.|. ...+..|...|...+..+. +.+.+......| +......+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 3 55666666666666542 2245555555554443222 333333333332 34455556666666664
Q ss_pred hhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChHH
Q 037510 454 FYGAVKLWNNILARGFYKNTITFNTMIKGLCKMG---KMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKV----GNLEE 526 (806)
Q Consensus 454 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~ 526 (806)
++.+......+.+.-...+...+..+...|...| +.++|+..|++..+.| +++...+..+...|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 4444333222221111123336666666777777 7777777777777776 44555555566666443 56777
Q ss_pred HHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHH-H--HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC--
Q 037510 527 AFKIKNLMERREILPSMEKEAIVPSIDMYNYLISV-A--FKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAG-- 601 (806)
Q Consensus 527 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-- 601 (806)
|...|+.. . +-+...+..+... + ...+++++|.+.|++..+.| +...+..+...|. .|
T Consensus 236 A~~~~~~a---------a----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 236 AQALLEKI---------A----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp HHHHHHHH---------G----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred HHHHHHHH---------c----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence 77777655 2 2233444444444 2 34556666666666666554 4445555555554 33
Q ss_pred ---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCC
Q 037510 602 ---MLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCR----LGKIDEANIFLQKMVDFD 652 (806)
Q Consensus 602 ---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 652 (806)
++++|++.|++.. . -+...+..+...|.. ..++++|..+|++..+.|
T Consensus 299 ~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp SCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 6666666666555 2 244555555555544 225666666666665544
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=3.9e-14 Score=150.19 Aligned_cols=377 Identities=12% Similarity=-0.001 Sum_probs=253.5
Q ss_pred HHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 037510 127 MILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEG---YVALLVYEQMMRVGIVPDVFTCSIVVNAYC 203 (806)
Q Consensus 127 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 203 (806)
.+...+.+.|++++|+++|+...+.| ++.++..|...+...|+. ++|+..|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788999999999999998865 566777788888888888 8999999998753 5556666666555
Q ss_pred hcC-----ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 037510 204 KEK-----SMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNG---AKRVLEWTCEKGISRTAVTYTTLTKGYCKQ 275 (806)
Q Consensus 204 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 275 (806)
..+ ++++|...|++..+.|.. + .+..|...|...+..+. +.+.+......| ++.++..|...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 554 788999999999987633 3 67778888887765444 455555555443 567888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc----CC
Q 037510 276 HKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVG---KVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKL----GQ 348 (806)
Q Consensus 276 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~ 348 (806)
+.++++.+....+.+. -...++..+..+...|...| +.++|+..|++..+.|.. +...+..|...|... ++
T Consensus 155 ~~~~~~~~~a~~~~~~-a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 155 GTYDQHLDDVERICKA-ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp TCGGGGHHHHHHHHHH-HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCC
T ss_pred CCcccCHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCC
Confidence 8655544443333221 11223448888888999999 999999999999998744 566557777777655 79
Q ss_pred HhHHHHHHHHHhhCCCCCChhcHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC-----CHH
Q 037510 349 VCEAKRVLRCMGDWNLRPDSFSFNTLVDG-Y--CRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVG-----DVD 420 (806)
Q Consensus 349 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-----~~~ 420 (806)
+++|...|++.. . -+...+..+... + ...+++++|++.|++..+.| +...+..+...|. .| +.+
T Consensus 233 ~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999987 3 356677777776 4 56899999999999999876 6677777777776 55 999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh----cCCHHHH
Q 037510 421 EALHLWLMMLKRCVCPNEVGYCTLLDILFN----KGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCK----MGKMTEA 492 (806)
Q Consensus 421 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a 492 (806)
+|...|++.. ..+...+..+...|.. ..++++|...|+...+.|. ......+...|.. ..+.++|
T Consensus 305 ~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 9999999887 3467788888888876 4499999999999998763 4455566666653 4589999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037510 493 QKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLM 534 (806)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (806)
..+++...+.|. ++.......+......++..+|..+.+..
T Consensus 378 ~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~ 418 (452)
T 3e4b_A 378 YVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQE 418 (452)
T ss_dssp HHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999872 23222222222222334455666665544
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=4.7e-14 Score=138.08 Aligned_cols=226 Identities=12% Similarity=0.009 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCC-
Q 037510 473 TITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPS- 551 (806)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~- 551 (806)
...+..+...+...|++++|...++++.+.. .+...+..+..++...|++++|...++..... .....++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~ 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ-------GREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------HHHTTCCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-------Ccccccch
Confidence 3456677777888888888888888887776 66778888888888888888888888876321 1111122
Q ss_pred ---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037510 552 ---IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKL 628 (806)
Q Consensus 552 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 628 (806)
...+..+...+...|++++|...+++..+. .|+. ..+...|++++|...++++.... +.+...+..+
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 145 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLE 145 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHH
Confidence 577888999999999999999999999985 4553 34567788999999999999863 3356788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHH
Q 037510 629 VSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDAR 708 (806)
Q Consensus 629 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 708 (806)
+..+...|++++|...++++++..+ .+..++..++.+|...|++++|.
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~A~ 193 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIKRAP--------------------------------EDARGYSNRAAALAKLMSFPEAI 193 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCc--------------------------------ccHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999999987652 26778999999999999999999
Q ss_pred HHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 709 RIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 709 ~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..|+++++ ..|+. .+|..++.+|...|++++|++.++++++
T Consensus 194 ~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 194 ADCNKAIE--KDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999 56764 5899999999999999999999999988
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=2.3e-13 Score=132.64 Aligned_cols=213 Identities=13% Similarity=-0.003 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037510 552 IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVST 631 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 631 (806)
...+..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++++.. +.+...+..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4667778899999999999999999998863 3467788899999999999999999999999874 4478889999999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 037510 632 LCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 632 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
+...|++++|..+++++.+.+..| .+..++..++.++...|++++|...|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYP------------------------------ERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCT------------------------------THHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCc------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999998832222 25668888999999999999999999
Q ss_pred HHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037510 712 SALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLT 790 (806)
Q Consensus 712 ~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 790 (806)
+++.+ ..|+ ..++..++..|...|++++|+..++++.+.. ..+...+..+...+.+.|+.++|.++++++.+ ..
T Consensus 165 ~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~ 239 (252)
T 2ho1_A 165 EKSLR--LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LY 239 (252)
T ss_dssp HHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHh--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HC
Confidence 99998 5565 4689999999999999999999999999842 23667788889999999999999999999988 67
Q ss_pred CCHhhHHHHHH
Q 037510 791 PTVVTYNILID 801 (806)
Q Consensus 791 p~~~~~~~li~ 801 (806)
|+...+..++.
T Consensus 240 p~~~~~~~~l~ 250 (252)
T 2ho1_A 240 PGSLEYQEFQA 250 (252)
T ss_dssp TTSHHHHHHHT
T ss_pred CCCHHHHHHHh
Confidence 77766665554
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=1.3e-13 Score=136.27 Aligned_cols=245 Identities=12% Similarity=0.044 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--
Q 037510 509 ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN-- 586 (806)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-- 586 (806)
..+......+...|++++|...++... .. .+.+...+..+...+...|++++|.+.+++..+.+..|+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l---------~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 73 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLE---------AK-KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAK 73 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHH---------HT-TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH---------Hh-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHH
Confidence 345567788899999999999999872 22 123455788899999999999999999999998432222
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAIN 666 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 666 (806)
...|..+...+...|++++|++.|+++++.. +.+...+..++.++...|++++|...++++++..+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------------- 139 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT------------- 139 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-------------
Confidence 2348889999999999999999999999864 44678899999999999999999999999987642
Q ss_pred hhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCC---HHHH
Q 037510 667 VDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGD---INEA 742 (806)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~---~~~A 742 (806)
.+..++..++..+...+++++|.+.|+++++ ..|+. ..+..++.++...|+ +++|
T Consensus 140 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A 198 (272)
T 3u4t_A 140 -------------------TDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLA 198 (272)
T ss_dssp -------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTT
T ss_pred -------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHH
Confidence 2667888888444455699999999999999 67775 588889999999998 8999
Q ss_pred HHHHHHHHHcC-CCCCh------hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 037510 743 FNLRDEMLKIN-LVPNI------ATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILI 800 (806)
Q Consensus 743 ~~~~~~~~~~~-~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 800 (806)
+..++++++.. -.|+. ..|..++..|.+.|++++|.++++++.+ +.|+.......+
T Consensus 199 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~l 261 (272)
T 3u4t_A 199 KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA--LDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCccHHHHHHHh
Confidence 99999998731 12432 5778899999999999999999999998 678765554443
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=2.1e-12 Score=127.44 Aligned_cols=230 Identities=13% Similarity=0.013 Sum_probs=198.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHC
Q 037510 506 PNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFK----SRELTSLVDLLAEMQTM 581 (806)
Q Consensus 506 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 581 (806)
.+..++..+...+...|++++|...|+.. .. ..+...+..+...+.. .+++++|...|++..+.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a---------~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKA---------CD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHH---------HH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHH---------HH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 36678888899999999999999999987 33 3355778889999999 99999999999999987
Q ss_pred CCCCCHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCC
Q 037510 582 GLYPNIVTYGALISGWCD----AGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCR----LGKIDEANIFLQKMVDFDF 653 (806)
Q Consensus 582 g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 653 (806)
+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...+++..+.+
T Consensus 72 ~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 144 (273)
T 1ouv_A 72 N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN- 144 (273)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-
T ss_pred C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-
Confidence 5 77888888899988 999999999999999875 78888999999999 999999999999999865
Q ss_pred CCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCCHHhHHHH
Q 037510 654 VPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK----SGNVTDARRIFSALLLTGFSPDNFTYSTL 729 (806)
Q Consensus 654 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 729 (806)
+...+..+...|.. .+++++|+..|++..+.+ +..++..+
T Consensus 145 ---------------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 188 (273)
T 1ouv_A 145 ---------------------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNA 188 (273)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ---------------------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 34577788888888 899999999999999853 45678899
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhh
Q 037510 730 IHGYAA----VGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCN----SGELDRAKRLFCKLRQKGLTPTVVT 795 (806)
Q Consensus 730 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 795 (806)
+..|.. .+++++|++.|+++.+.+ +...+..+...|.+ .|++++|.+++++..+. .|+...
T Consensus 189 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~ 257 (273)
T 1ouv_A 189 GNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL--GAKGAC 257 (273)
T ss_dssp HHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH--TCHHHH
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc--CCHHHH
Confidence 999999 999999999999999854 36778889999999 99999999999999884 454433
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=1.5e-13 Score=129.85 Aligned_cols=196 Identities=17% Similarity=0.048 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 037510 121 SPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVN 200 (806)
Q Consensus 121 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 200 (806)
++..+..+...+.+.|++++|+..|+...+..+. +..++..+...+.+.|++++|+..|++.++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3455556666666777777777777766665432 56666666666677777777777776666643 123455555666
Q ss_pred HHHhc-----------CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037510 201 AYCKE-----------KSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLT 269 (806)
Q Consensus 201 ~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 269 (806)
.+.+. |++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 66555 55555555555554432 1234444455555555555555555555554444 3444445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHH
Q 037510 270 KGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNE 323 (806)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 323 (806)
.+|...|++++|+..|++..+. .+.+...+..+...+...|++++|...+++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555555554443 122334444444444444555544444443
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=3.6e-13 Score=128.57 Aligned_cols=215 Identities=11% Similarity=0.033 Sum_probs=182.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037510 551 SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVS 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 630 (806)
+...+..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++++.. +.+...+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 46678889999999999999999999998863 3457788899999999999999999999999864 457888999999
Q ss_pred HHHhc-CCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 631 TLCRL-GKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 631 ~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
.+... |++++|...++++.+.+..| .+..++..++.++...|++++|+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYP------------------------------TPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCS------------------------------CHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCc------------------------------chHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999 99999999999998832222 246688899999999999999999
Q ss_pred HHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037510 710 IFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKG 788 (806)
Q Consensus 710 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 788 (806)
.++++.+ ..|+ ..++..++..|...|++++|++.++++++.....+...+..+...+...|+.++|..+++.+.+
T Consensus 135 ~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-- 210 (225)
T 2vq2_A 135 YLKRSLA--AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA-- 210 (225)
T ss_dssp HHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHH--hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--
Confidence 9999998 5676 4689999999999999999999999999853214566777888888999999999999999986
Q ss_pred CCCCHhhHHHHHH
Q 037510 789 LTPTVVTYNILID 801 (806)
Q Consensus 789 ~~p~~~~~~~li~ 801 (806)
..|+......++.
T Consensus 211 ~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 211 NFPYSEELQTVLT 223 (225)
T ss_dssp HCTTCHHHHHHHC
T ss_pred hCCCCHHHHHHhc
Confidence 5787777666553
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=3.9e-12 Score=125.51 Aligned_cols=223 Identities=13% Similarity=0.011 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcccChhhhhcCC
Q 037510 473 TITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCK----VGNLEEAFKIKNLMERREILPSMEKEAI 548 (806)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 548 (806)
..++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...+++. ...+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a---------~~~~- 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA---------CDLN- 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---------HHTT-
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH---------HHCC-
Confidence 344444555555555555555555555552 234455555555555 56666666665554 2222
Q ss_pred CCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCC
Q 037510 549 VPSIDMYNYLISVAFK----SRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCD----AGMLNKAFKAYFDMIEKGFSP 620 (806)
Q Consensus 549 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 620 (806)
+...+..+...+.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|++.|++..+.+
T Consensus 73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--- 144 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--- 144 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---
T ss_pred --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---
Confidence 44555555566666 666666666666666653 55666667777776 777788888887777754
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHH
Q 037510 621 NVAICSKLVSTLCR----LGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIA 696 (806)
Q Consensus 621 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 696 (806)
+...+..+...|.. .+++++|...+++..+.+ ++..+..+..
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~a~~~lg~ 190 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----------------------------------DSPGCFNAGN 190 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------------------------------CHHHHHHHHH
Confidence 55666677777776 778888888888777653 3446677777
Q ss_pred HHHh----cCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 037510 697 GICK----SGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAA----VGDINEAFNLRDEMLKIN 753 (806)
Q Consensus 697 ~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 753 (806)
.|.. .+++++|...|++..+. .| ..++..++..|.. .+++++|++.|+++.+.|
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~--~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACEL--EN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhC--CC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7777 78888888888888774 23 5567777788877 788888888888887754
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=2.6e-13 Score=138.95 Aligned_cols=244 Identities=11% Similarity=0.033 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHHCCCCCC
Q 037510 508 IITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRE-LTSLVDLLAEMQTMGLYPN 586 (806)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~g~~p~ 586 (806)
...|..+...+...|++++|+..++.+ ... .+.+...|+.+..++...|+ +++|+..+++..+.. +-+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~a---------l~l-~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~ 165 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDA---------IEL-NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKN 165 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHH---------HHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHH---------HHh-CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCC
Confidence 466788888899999999999999987 222 23357889999999999997 999999999999863 336
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAIN 666 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 666 (806)
...|..+..++...|++++|+..|+++++.. +.+...|..+..++.+.|++++|+..++++++.++.
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~------------ 232 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR------------ 232 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------
Confidence 7789999999999999999999999999874 447889999999999999999999999999987643
Q ss_pred hhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh-cCChhhH-----HHHHHHHHHCCCCCCHH-hHHHHHHHHHhcC--
Q 037510 667 VDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK-SGNVTDA-----RRIFSALLLTGFSPDNF-TYSTLIHGYAAVG-- 737 (806)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g-- 737 (806)
+..+|+.++.++.. .|..++| ++.|+++++ +.|+.. +|..+..++...|
T Consensus 233 --------------------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~ 290 (382)
T 2h6f_A 233 --------------------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLS 290 (382)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGG
T ss_pred --------------------CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCcc
Confidence 77899999999999 6666888 588999999 788764 8999999999988
Q ss_pred CHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcC---------CHHHHHHHHHHH-HHCCCCCCHhh-HHHHHHh
Q 037510 738 DINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSG---------ELDRAKRLFCKL-RQKGLTPTVVT-YNILIDG 802 (806)
Q Consensus 738 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---------~~~~A~~~~~~m-~~~g~~p~~~~-~~~li~~ 802 (806)
++++|++.+.++ + ..| +...+..|+.+|.+.| .+++|.++++++ .+ +.|.... |..+...
T Consensus 291 ~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 291 KYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRS 362 (382)
T ss_dssp GCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHH
Confidence 689999999988 4 445 6678899999999875 359999999999 66 6777443 4444333
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=4.7e-13 Score=132.16 Aligned_cols=236 Identities=9% Similarity=-0.036 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HhHHHHHH
Q 037510 122 PTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPD--VFTCSIVV 199 (806)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~l~ 199 (806)
++++......+...|++++|+..|+...+..+. +..++..+...+...|++++|+..|++..+....|+ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 344556667777888888888888888776542 556777888888888888888888888877331122 22366777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 037510 200 NAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKME 279 (806)
Q Consensus 200 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (806)
..+...|++++|...+++..+.. +.+..++..+...|...|++++|...|++..+..+ .+..+|..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHH
Confidence 77777788888888777777654 23456677777777777777777777777766532 34556666662333445777
Q ss_pred HHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------hhHHHHHHHHHHhcCCH
Q 037510 280 EAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGK---VDEAIRVLNEMLKTG-LEMN------LLICNSLINGYCKLGQV 349 (806)
Q Consensus 280 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~ 349 (806)
+|++.|+++.+. .+.+...+..+...+...|+ +++|...++++.+.. ..|+ ...|..+...|...|++
T Consensus 160 ~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 160 KADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 777777777665 23345556666666666666 666666666665431 0112 13555566666666666
Q ss_pred hHHHHHHHHHhhC
Q 037510 350 CEAKRVLRCMGDW 362 (806)
Q Consensus 350 ~~A~~~~~~~~~~ 362 (806)
++|...|++..+.
T Consensus 238 ~~A~~~~~~al~~ 250 (272)
T 3u4t_A 238 VKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6666666666554
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=1e-12 Score=134.56 Aligned_cols=248 Identities=8% Similarity=-0.003 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 037510 122 PTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGE-GYVALLVYEQMMRVGIVPDVFTCSIVVN 200 (806)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 200 (806)
+.++..+...+...|++++|++.|+.+++..+. +..+|+.+..++...|+ +++|+..|+++++.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 456778888889999999999999999987653 77899999999999997 99999999999886432 6778888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHH
Q 037510 201 AYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCK-QHKME 279 (806)
Q Consensus 201 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~ 279 (806)
++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|...++++.+..+ .+..+|+.+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998875 44788899999999999999999999999998765 478889999999888 66657
Q ss_pred HH-----HHHHHHHHhcCCCCCChHhHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC-----
Q 037510 280 EA-----ENMLRRMKEEDDVIVDEYAYGVLIDGYCKVG--KVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLG----- 347 (806)
Q Consensus 280 ~a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----- 347 (806)
+| ++.|++.... .+-+...|..+...+...| ++++|.+.+.++ +. .+.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 77 4778887775 3345677888888888877 588888888887 33 2346677888888888764
Q ss_pred ----CHhHHHHHHHHH-hhCCCCCChhcHHHHHHHH
Q 037510 348 ----QVCEAKRVLRCM-GDWNLRPDSFSFNTLVDGY 378 (806)
Q Consensus 348 ----~~~~A~~~~~~~-~~~~~~~~~~~~~~li~~~ 378 (806)
..++|+.+|+++ .+.+ +.....|..+...+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 257888888887 5543 23334455444443
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=2.2e-13 Score=131.86 Aligned_cols=212 Identities=9% Similarity=0.007 Sum_probs=164.0
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLV 629 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 629 (806)
.....+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++++.. +.+...+..++
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345667778888999999999999999998853 3467788889999999999999999999999874 45788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
..+...|++++|...++++.+... .+..++..++..+...|++++|..
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~--------------------------------~~~~~~~~~a~~~~~~~~~~~A~~ 146 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM--------------------------------ENGDLFYMLGTVLVKLEQPKLALP 146 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC--------------------------------CSHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC--------------------------------CCHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999999999987642 256788899999999999999999
Q ss_pred HHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037510 710 IFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKG 788 (806)
Q Consensus 710 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 788 (806)
.++++.+ ..|+ ..++..++..|...|++++|++.++++.+.. ..+..++..++.+|.+.|++++|.++++++.+
T Consensus 147 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-- 221 (243)
T 2q7f_A 147 YLQRAVE--LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID-- 221 (243)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--
T ss_pred HHHHHHH--hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--
Confidence 9999998 5565 4689999999999999999999999999853 23677899999999999999999999999988
Q ss_pred CCCCHhhHHHHH
Q 037510 789 LTPTVVTYNILI 800 (806)
Q Consensus 789 ~~p~~~~~~~li 800 (806)
..|+.......+
T Consensus 222 ~~p~~~~~~~~~ 233 (243)
T 2q7f_A 222 IQPDHMLALHAK 233 (243)
T ss_dssp HCTTCHHHHHHH
T ss_pred cCcchHHHHHHH
Confidence 567654443333
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=5.3e-13 Score=122.76 Aligned_cols=172 Identities=20% Similarity=0.205 Sum_probs=133.1
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhh
Q 037510 586 NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAI 665 (806)
Q Consensus 586 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~ 665 (806)
++..|..+...|...|++++|++.|++.++.. +.+...+..++.+|.+.|++++|...++++......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~----------- 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT----------- 71 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-----------
Confidence 55667778888888888888888888888763 346777788888888888888888888887765432
Q ss_pred hhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHH
Q 037510 666 NVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFN 744 (806)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~ 744 (806)
+...+..++..+...++++.|...+++..+ ..|+. .++..++.+|.+.|++++|++
T Consensus 72 ---------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~ 128 (184)
T 3vtx_A 72 ---------------------SAEAYYILGSANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIE 128 (184)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHH
Confidence 456677777888888888888888888887 55654 477888888888888888888
Q ss_pred HHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 037510 745 LRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTY 796 (806)
Q Consensus 745 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 796 (806)
.|+++++ +.| ++.++..++.+|.+.|++++|.+.|++..+ +.|+...|
T Consensus 129 ~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 129 AYEKTIS--IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE--KEEKKAKY 177 (184)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHH--hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh--CCccCHHH
Confidence 8888887 345 567788888888888888888888888887 66765544
No 53
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.53 E-value=6.3e-10 Score=121.59 Aligned_cols=244 Identities=11% Similarity=0.011 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037510 456 GAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQ-KIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLM 534 (806)
Q Consensus 456 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (806)
.+..+|++.+.. ++.....|-..+..+...|+.++|. .++++..... +.+...|...+....+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445667777765 3557778888888888888888886 9999888753 556667777888888899999999999887
Q ss_pred HhcccChhhh--hcCCCC------------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHcc
Q 037510 535 ERREILPSME--KEAIVP------------SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDA 600 (806)
Q Consensus 535 ~~~~~~~~~~--~~~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 600 (806)
...... ... .... | ...+|...+....+.|+.+.|..+|....+.-..+....|...+..-.+.
T Consensus 405 l~~l~~-~~~~~~~~~-p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 405 IDRIHL-DLAALMEDD-PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHH-HHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT
T ss_pred HHHHHH-Hhhhhhhcc-CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Confidence 321000 000 0011 2 23467777888888899999999999998751112233443333333343
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHh
Q 037510 601 -GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDES 679 (806)
Q Consensus 601 -g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 679 (806)
++.+.|.++|+..++. ++.+...+...++.....|+.+.|..+|++++.....++
T Consensus 483 ~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~----------------------- 538 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH----------------------- 538 (679)
T ss_dssp TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT-----------------------
T ss_pred CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH-----------------------
Confidence 4589999999999987 455677777888888889999999999999987653211
Q ss_pred hhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 037510 680 ARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAA 735 (806)
Q Consensus 680 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 735 (806)
.....|...+..-.+.|+.+.+..+.+++.+ ..|+......+++-|.-
T Consensus 539 ------~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 539 ------LLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVNKLEEFTNKYKV 586 (679)
T ss_dssp ------HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCCHHHHHHHHTCB
T ss_pred ------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHhcC
Confidence 1345788888888899999999999999999 66776655555555543
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=6e-13 Score=131.62 Aligned_cols=247 Identities=9% Similarity=-0.086 Sum_probs=143.2
Q ss_pred HcCChhhHHHHHHHhhhcCCC---cChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhH
Q 037510 134 QKGMLKNALHVFDNMGKYGCI---PSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEK 210 (806)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 210 (806)
..|++++|+..|+.+.+.... .+..++..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346777888888877765321 235567777777777777777777777777643 2246667777777777777777
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037510 211 ALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKE 290 (806)
Q Consensus 211 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 290 (806)
|...++++.+.. +.+..++..+..+|.+.|++++|...|+++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777777777653 2345667777777777777777777777776643 3333333344444555677777777766555
Q ss_pred cCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCC
Q 037510 291 EDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEM---NLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPD 367 (806)
Q Consensus 291 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 367 (806)
. .+++...+. ++..+...++.++|...+++........ +...+..+...|.+.|++++|...|++..+.. |+
T Consensus 173 ~--~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 173 K--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp H--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred c--CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 4 222333332 4455555666666666666654432110 13455555666666666666666666655432 21
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHH
Q 037510 368 SFSFNTLVDGYCRECDMTEAFRLC 391 (806)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~a~~~~ 391 (806)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 1 222233444445555554443
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=2.4e-13 Score=143.53 Aligned_cols=278 Identities=15% Similarity=0.105 Sum_probs=202.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcC-CC
Q 037510 475 TFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNI----ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEA-IV 549 (806)
Q Consensus 475 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~ 549 (806)
.+..+...+...|++++|...++++.+.+ +.+. ..+..+...+...|++++|...+++..... ...+ ..
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~ 123 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA-----KSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHTTCHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----HHccCch
Confidence 34445566777788888888888777764 2233 467777778888888888888877663210 0111 12
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CC-CCCHhHHHHHHHHHHccCC-----------------hHHHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTM----GL-YPNIVTYGALISGWCDAGM-----------------LNKAF 607 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~-~p~~~~~~~l~~~~~~~g~-----------------~~~A~ 607 (806)
.....+..+...+...|++++|...+++..+. +- .....++..+...|...|+ +++|+
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 23466778888999999999999999887653 11 1124467788888999999 99999
Q ss_pred HHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhc
Q 037510 608 KAYFDMIEK----GFSP-NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARS 682 (806)
Q Consensus 608 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (806)
+.+++.++. +..+ ...++..+...+...|++++|...+++..+......
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------- 257 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG-------------------------- 257 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--------------------------
Confidence 999887652 1111 245778889999999999999999999876421100
Q ss_pred CCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 037510 683 LCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-------NFTYSTLIHGYAAVGDINEAFNLRDEMLKI--- 752 (806)
Q Consensus 683 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 752 (806)
.......++..++..|...|++++|...++++.+. .|+ ..++..++..|...|++++|++.++++++.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL--AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 00001347888999999999999999999998873 221 247889999999999999999999999873
Q ss_pred -CCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 753 -NLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 753 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
+..+ ...++..+..+|.+.|++++|..++++..+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 245788899999999999999999999876
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=6.8e-13 Score=131.23 Aligned_cols=83 Identities=12% Similarity=0.001 Sum_probs=44.3
Q ss_pred cCChhHHHHHHHHHHHCCC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 037510 451 KGDFYGAVKLWNNILARGF---YKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEA 527 (806)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 527 (806)
.|++++|+..++++.+... +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3445555555555554321 1133445555555666666666666666665543 33455555555556666666666
Q ss_pred HHHHHHH
Q 037510 528 FKIKNLM 534 (806)
Q Consensus 528 ~~~~~~~ 534 (806)
...++.+
T Consensus 97 ~~~~~~a 103 (275)
T 1xnf_A 97 YEAFDSV 103 (275)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=6.8e-12 Score=122.09 Aligned_cols=200 Identities=10% Similarity=-0.089 Sum_probs=103.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 037510 157 LRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDG 236 (806)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 236 (806)
...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556666666666666666666666666542 2244555555566666666666666666655543 2244555555555
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChH
Q 037510 237 YVSLGDLNGAKRVLEWTCEKGISR-TAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVD 315 (806)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 315 (806)
|...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHH
Confidence 555566666655555555411112 3344455555555555555555555555443 1223444444555555555555
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 316 EAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
+|...++++.+... .+...+..+...+.+.|+.++|...++++.+
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555444322 2334444444444444555555554444443
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=5.8e-12 Score=120.12 Aligned_cols=199 Identities=11% Similarity=-0.070 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 037510 157 LRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDG 236 (806)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 236 (806)
...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445555555555555555555555554432 1233444444444555555555555555544432 2233444444444
Q ss_pred HHhC-CCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCCh
Q 037510 237 YVSL-GDLNGAKRVLEWTCEKGISR-TAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKV 314 (806)
Q Consensus 237 ~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 314 (806)
+... |++++|...++++.+.+..| +...+..+...+...|++++|+..++++.+. .+.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCH
Confidence 4444 44444444444444411111 1233444444444444444444444444432 112233334444444444444
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 037510 315 DEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCM 359 (806)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 359 (806)
++|...++++.+..+..+...+..+...+...|+.+.|..+++.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 444444444433321112333333333333344444444443333
No 59
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.50 E-value=5.5e-10 Score=122.05 Aligned_cols=232 Identities=11% Similarity=0.011 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 037510 386 EAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEAL-HLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNI 464 (806)
Q Consensus 386 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 464 (806)
.+..+|++.+.. ++-+...|...+..+...|+.++|. .+|++.+.. ++.+...+...+....+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566666654 2224556666666666677777775 777777654 3335555666677777777777777777776
Q ss_pred HHCC----------CCC-----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc-
Q 037510 465 LARG----------FYK-----------NTITFNTMIKGLCKMGKMTEAQKIFDKMKEL-GCLPNIITYRTLSDGYCKV- 521 (806)
Q Consensus 465 ~~~~----------~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~- 521 (806)
+... .+. ...+|...+....+.|..+.|..+|.++.+. + ......|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 6531 111 2335777777777778888888888888765 2 12233443333333333
Q ss_pred CChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHc
Q 037510 522 GNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYP--NIVTYGALISGWCD 599 (806)
Q Consensus 522 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p--~~~~~~~l~~~~~~ 599 (806)
++.+.|.++|+.. .+. .+.+...+...+......|+.+.|..+|+........+ ....|...+..-.+
T Consensus 484 ~d~e~Ar~ife~~---------Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 484 KDTKTACKVLELG---------LKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp SCCHHHHHHHHHH---------HHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---------HHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3478888888876 222 33455666777777777888888888888887753221 23567777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037510 600 AGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTL 632 (806)
Q Consensus 600 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 632 (806)
.|+.+.+.++.+++.+. .|+......+++-|
T Consensus 554 ~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 554 VGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp TCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 88888888888888876 34433334444443
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=8.9e-13 Score=138.86 Aligned_cols=283 Identities=14% Similarity=0.074 Sum_probs=196.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcC
Q 037510 472 NTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN----IITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEA 547 (806)
Q Consensus 472 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 547 (806)
....+......+...|++++|...++++.+.+ +.+ ...+..+...+...|++++|...++...... ...+
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~ 81 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-----RTIG 81 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----Hhcc
Confidence 34445555666667777777777777776653 223 2456667777777777777777777652210 1111
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHccCC-------------------
Q 037510 548 IVP-SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL-YPN----IVTYGALISGWCDAGM------------------- 602 (806)
Q Consensus 548 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~------------------- 602 (806)
..| ....+..+...+...|++++|...+++..+... .++ ..++..+...|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 111 245667788888888999998888887765310 011 3467778888889999
Q ss_pred -hHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhh
Q 037510 603 -LNKAFKAYFDMIEK----GFSP-NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSL 676 (806)
Q Consensus 603 -~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 676 (806)
+++|.+.+.+.++. +..+ ...++..+...+...|++++|...++++.+......
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------- 221 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-------------------- 221 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--------------------
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC--------------------
Confidence 99999999887652 1111 245778888999999999999999999875421100
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 677 DESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT----GFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 677 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.......++..++..|...|++++|...+++..+. +..+. ..++..++..|...|++++|++.++++++
T Consensus 222 ------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 222 ------DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 00012347888999999999999999999998863 11111 24788999999999999999999999887
Q ss_pred cCC----CC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 752 INL----VP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 752 ~~~----~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
..- .+ ...++..+..+|.+.|++++|..++++..+
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 311 11 145778889999999999999999998764
No 61
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=1.8e-12 Score=125.50 Aligned_cols=203 Identities=13% Similarity=0.037 Sum_probs=128.4
Q ss_pred CCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 037510 120 FSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVV 199 (806)
Q Consensus 120 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 199 (806)
..+..+..+...+...|++++|+..|+.+.+..+ .+...+..+...+...|++++|+..|+++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 3455667777778888888888888888877543 357777778888888888888888888877653 23566677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 037510 200 NAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKME 279 (806)
Q Consensus 200 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (806)
..+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+... .+...+..+...+.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 77777788888888887777654 34566677777777777777777777777776543 35666677777777777777
Q ss_pred HHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 037510 280 EAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTG 328 (806)
Q Consensus 280 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 328 (806)
+|++.++++.+. .+.+..++..+...+...|++++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777776665 23345566666666777777777777777666653
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=5.5e-13 Score=140.47 Aligned_cols=306 Identities=14% Similarity=0.055 Sum_probs=207.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CH
Q 037510 438 EVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKN----TITFNTMIKGLCKMGKMTEAQKIFDKMKEL----GCLP-NI 508 (806)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 508 (806)
...+......+...|++++|+..|+++.+.+. .+ ..++..+...+...|++++|...+++..+. +..| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 34445555666666666666666666665421 12 235566666777777777777777665432 1111 13
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCC-CCCHHHHHHHHHHHHhcCC--------------------
Q 037510 509 ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAI-VPSIDMYNYLISVAFKSRE-------------------- 567 (806)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-------------------- 567 (806)
.++..+...+...|++++|...++...... ...+. .....++..+...+...|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDIS-----RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 466777778888888888888877663210 01110 1124567788888999999
Q ss_pred HhHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC
Q 037510 568 LTSLVDLLAEMQTM----GLYP-NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGF-SPN----VAICSKLVSTLCRLGK 637 (806)
Q Consensus 568 ~~~a~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~ 637 (806)
+++|.+.+++..+. +..| ...++..+...|...|++++|.+.++++++... .++ ..++..+...+...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999998876542 2111 134677888889999999999999999886310 122 3478888999999999
Q ss_pred HHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 037510 638 IDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT 717 (806)
Q Consensus 638 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 717 (806)
+++|...+++..+...... .......++..++..|...|++++|...+++..+.
T Consensus 243 ~~~A~~~~~~al~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLK--------------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCc--------------------------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 9999999999875421100 00012457888999999999999999999998873
Q ss_pred ----CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhcHHHHHHHHHhcCCHH
Q 037510 718 ----GFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKI----NLVP-NIATYNSLVSGLCNSGELD 775 (806)
Q Consensus 718 ----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 775 (806)
+-.+. ..++..++..|...|++++|++.++++++. +..+ ...++..+...+...|+..
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11111 247889999999999999999999998872 2122 3456778888888888763
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=9.7e-13 Score=134.46 Aligned_cols=279 Identities=15% Similarity=0.081 Sum_probs=195.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCC-C
Q 037510 476 FNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN----IITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIV-P 550 (806)
Q Consensus 476 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~ 550 (806)
+......+...|++++|...++++.+.. +.+ ...+..+...+...|++++|...++...... ...+.. .
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~ 81 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-----RTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHTCHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hcccccHH
Confidence 3344556667777777777777776653 223 3456677777777788888777777652210 111111 1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHccCC--------------------hHH
Q 037510 551 SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL-YPN----IVTYGALISGWCDAGM--------------------LNK 605 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~--------------------~~~ 605 (806)
....+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 245677788888889999999988887765310 112 3367778888888898 899
Q ss_pred HHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhh
Q 037510 606 AFKAYFDMIEK----GFSP-NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESA 680 (806)
Q Consensus 606 A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (806)
|.+.+++.++. +..+ ...++..+...+...|++++|...++++.+......
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------------------ 217 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG------------------------ 217 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC------------------------
Confidence 99998887642 1111 245777888899999999999999999875311000
Q ss_pred hcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC-CCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--
Q 037510 681 RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG-FSPD----NFTYSTLIHGYAAVGDINEAFNLRDEMLKIN-- 753 (806)
Q Consensus 681 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 753 (806)
.......++..++..+...|++++|...+++..+.. ..++ ..++..++..|...|++++|+..++++++..
T Consensus 218 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 218 --DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 000123478889999999999999999999988631 0111 3478899999999999999999999998731
Q ss_pred --CCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 754 --LVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 754 --~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
-.+ ...++..+..+|.+.|++++|..++++..+
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 111 244778899999999999999999999887
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=1.6e-12 Score=137.21 Aligned_cols=280 Identities=14% Similarity=0.070 Sum_probs=196.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHH
Q 037510 440 GYCTLLDILFNKGDFYGAVKLWNNILARGFYKNT----ITFNTMIKGLCKMGKMTEAQKIFDKMKEL----GC-LPNIIT 510 (806)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~ 510 (806)
.+..+...+...|++++|+..|+++.+... .+. ..+..+...+...|++++|...+++..+. +. +....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 334455566667777777777777666531 122 35666677777777777777777776543 10 123456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcC-CCCCHHHHHHHHHHHHhcCC-----------------HhHHH
Q 037510 511 YRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEA-IVPSIDMYNYLISVAFKSRE-----------------LTSLV 572 (806)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~ 572 (806)
+..+...+...|++++|...++...... ...+ .......+..+...+...|+ +++|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLA-----RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH-----HHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 7777888888888888888887763210 1111 11234577788889999999 99999
Q ss_pred HHHHHHHHC----CCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHH
Q 037510 573 DLLAEMQTM----GLYP-NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGF-SPN----VAICSKLVSTLCRLGKIDEAN 642 (806)
Q Consensus 573 ~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~ 642 (806)
+.+++..+. +..+ ....+..+...|...|++++|.+.+++.++... .++ ...+..+..+|...|++++|.
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 988876542 1111 234677888889999999999999999886311 112 337788899999999999999
Q ss_pred HHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC----C
Q 037510 643 IFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT----G 718 (806)
Q Consensus 643 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g 718 (806)
..+++++....... .......++..++..|...|++++|...+++.++. +
T Consensus 284 ~~~~~al~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 284 EHYKRTLALAVELG--------------------------EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC--------------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 99999876421100 00012457888999999999999999999998873 1
Q ss_pred CCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 719 FSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 719 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..+. ..++..++.+|...|++++|.+.++++++
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 23788999999999999999999999988
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=7.6e-12 Score=114.95 Aligned_cols=171 Identities=13% Similarity=0.090 Sum_probs=150.0
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLV 629 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 629 (806)
.+..+|..+...+.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|...+.++.... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 356789999999999999999999999999863 3357788999999999999999999999999864 44677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
..+...++++.|...++++....+ .+..++..++.+|.+.|++++|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~--------------------------------~~~~~~~~lg~~~~~~g~~~~A~~ 128 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNT--------------------------------VYADAYYKLGLVYDSMGEHDKAIE 128 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc--------------------------------cchHHHHHHHHHHHHhCCchhHHH
Confidence 999999999999999999987653 267789999999999999999999
Q ss_pred HHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 710 IFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 710 ~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
.|++.++ +.|+. .+|..++.+|.+.|++++|++.|+++++ +.|+.
T Consensus 129 ~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 129 AYEKTIS--IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTHHH
T ss_pred HHHHHHH--hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh--CCccC
Confidence 9999999 67876 5899999999999999999999999998 55643
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=7.1e-12 Score=127.96 Aligned_cols=278 Identities=15% Similarity=0.075 Sum_probs=189.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHH
Q 037510 442 CTLLDILFNKGDFYGAVKLWNNILARGFYKN----TITFNTMIKGLCKMGKMTEAQKIFDKMKEL----GCL-PNIITYR 512 (806)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~ 512 (806)
......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +.. ....++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 334455566666666666666666542 112 245566666777777777777777665432 111 1245667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCC-CCCHHHHHHHHHHHHhcCC--------------------HhHH
Q 037510 513 TLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAI-VPSIDMYNYLISVAFKSRE--------------------LTSL 571 (806)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a 571 (806)
.+...+...|++++|...++...... ...+. .....++..+...+...|+ +++|
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDIS-----RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHH-----HHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 77788888888888888887763210 01110 1113467778888888998 8999
Q ss_pred HHHHHHHHHC----CCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 037510 572 VDLLAEMQTM----GLYP-NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGF-SPN----VAICSKLVSTLCRLGKIDEA 641 (806)
Q Consensus 572 ~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A 641 (806)
.+.+++..+. +..+ ....+..+...+...|++++|.+.++++++... .++ ..++..++..+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9888876542 1111 234677788889999999999999999885310 111 34778888999999999999
Q ss_pred HHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC----
Q 037510 642 NIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT---- 717 (806)
Q Consensus 642 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 717 (806)
...+++..+...... .......++..++..|...|++++|...++++.+.
T Consensus 243 ~~~~~~al~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 243 SEYYKKTLLLARQLK--------------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc--------------------------chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 999999875321100 00012457888999999999999999999998763
Q ss_pred CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 718 GFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 718 g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+..+. ..++..++..|...|++++|...++++++
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 11111 23788999999999999999999999988
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=3.7e-12 Score=135.90 Aligned_cols=196 Identities=10% Similarity=-0.049 Sum_probs=173.1
Q ss_pred CCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 037510 549 VPSIDMYNYLISVAFKSREL-TSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSK 627 (806)
Q Consensus 549 ~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 627 (806)
+.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|+++++. .|+...+..
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 175 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQN 175 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHH
Confidence 35788899999999999999 99999999998863 335788999999999999999999999999986 577889999
Q ss_pred HHHHHHhc---------CCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHH
Q 037510 628 LVSTLCRL---------GKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGI 698 (806)
Q Consensus 628 l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 698 (806)
+..++... |++++|...++++++..+. +...|..++.+|
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------------------------------~~~~~~~lg~~~ 223 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL--------------------------------DGRSWYILGNAY 223 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC--------------------------------CHHHHHHHHHHH
Confidence 99999999 9999999999999987532 677899999999
Q ss_pred Hhc--------CChhhHHHHHHHHHHCCCCC---C-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHH
Q 037510 699 CKS--------GNVTDARRIFSALLLTGFSP---D-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLV 765 (806)
Q Consensus 699 ~~~--------g~~~~A~~~~~~~~~~g~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 765 (806)
... |++++|+..|+++++ +.| + ..+|..++.+|...|++++|++.|+++++ +.| +...+..+.
T Consensus 224 ~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~ 299 (474)
T 4abn_A 224 LSLYFNTGQNPKISQQALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHhhccccchHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 998 999999999999999 678 4 46899999999999999999999999998 456 566788999
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 037510 766 SGLCNSGELDRAKRLFCK 783 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~ 783 (806)
.++...|++++|.+.+.+
T Consensus 300 ~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 300 QLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999976544
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=1.4e-11 Score=128.27 Aligned_cols=235 Identities=10% Similarity=0.010 Sum_probs=177.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CC-----C
Q 037510 514 LSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVP-SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL-YP-----N 586 (806)
Q Consensus 514 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p-----~ 586 (806)
....+...|++++|...++...... ...+-.+ ...++..+...+...|++++|...+++..+.-. .+ .
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKL-----IFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTG-----GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHH-----hhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 5667788999999999999873210 0011111 346788899999999999999999998875310 11 1
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCCh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGF-SPN----VAICSKLVSTLCRLGKIDEANIFLQKMVDF----DFVPDL 657 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~ 657 (806)
..+++.+...|...|++++|.+.++++++... .++ ..++..++.+|...|++++|...+++.++. +..|
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~-- 261 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP-- 261 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch--
Confidence 34678888999999999999999999886311 112 347888999999999999999999998863 1111
Q ss_pred hhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC---CCCCH-HhHHHHHHHH
Q 037510 658 KYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG---FSPDN-FTYSTLIHGY 733 (806)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~~-~~~~~l~~~~ 733 (806)
....++..++.+|.+.|++++|...+++..+.. -.|.. ..+..+...|
T Consensus 262 ----------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~ 313 (383)
T 3ulq_A 262 ----------------------------SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLY 313 (383)
T ss_dssp ----------------------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----------------------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 135678899999999999999999999988731 02222 2467889999
Q ss_pred HhcCC---HHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 734 AAVGD---INEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 734 ~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
...|+ +++|+.++++. +..| ....+..++..|.+.|++++|..++++..+
T Consensus 314 ~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 314 LSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999 77888887776 2333 345778899999999999999999999764
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=4.3e-11 Score=124.63 Aligned_cols=238 Identities=9% Similarity=-0.018 Sum_probs=176.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcC--CCCC
Q 037510 479 MIKGLCKMGKMTEAQKIFDKMKELGC-LPN----IITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEA--IVPS 551 (806)
Q Consensus 479 li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~ 551 (806)
....+...|++++|...+++..+.-. .++ ..++..+...+...|++++|...+++..... ...+ ....
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~ 183 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY-----KEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HTCSTTHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HhCccchHHH
Confidence 55667788999999999998876410 122 3678888899999999999999988773210 1111 1112
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHccCChHHHHHHHHHHHHc----CC-CCC
Q 037510 552 IDMYNYLISVAFKSRELTSLVDLLAEMQTMGL-YPN----IVTYGALISGWCDAGMLNKAFKAYFDMIEK----GF-SPN 621 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~ 621 (806)
..+++.+...+...|++++|.+.+++..+... .++ ..++..+...|...|++++|.+.+++.++. +. +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 46788899999999999999999998875311 111 247888899999999999999999999872 22 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
..++..++.++.+.|++++|...+++..+..... ..+.....+..+...|...
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------------------~~~~~~~~~~~l~~~~~~~ 316 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---------------------------GDVIYLSEFEFLKSLYLSG 316 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------------------------TCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---------------------------CCHHHHHHHHHHHHHHhCC
Confidence 6788899999999999999999999987641100 0001122356788889999
Q ss_pred CC---hhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 702 GN---VTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 702 g~---~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|+ .++|+.++++. +..|+. .++..++..|...|++++|.+.++++++
T Consensus 317 ~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 317 PDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99 77777777765 334444 3788999999999999999999999987
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=2.2e-10 Score=114.84 Aligned_cols=218 Identities=8% Similarity=0.008 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHhcccChhhhhcCCCCCHHHH
Q 037510 490 TEAQKIFDKMKELGCLPNIITYRTLSDGYCK-------VGNL-------EEAFKIKNLMERREILPSMEKEAIVPSIDMY 555 (806)
Q Consensus 490 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (806)
++|...|+++.+.. +.+...|..++..+.. .|++ ++|..+|++. ...-.+.+...|
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rA---------l~~~~p~~~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA---------ISTLLKKNMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH---------HTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHH---------HHHhCcccHHHH
Confidence 67888888888764 5577788887777653 5776 8888888876 221122356678
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-Hh-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 556 NYLISVAFKSRELTSLVDLLAEMQTMGLYPN-IV-TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLC 633 (806)
Q Consensus 556 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 633 (806)
..++..+.+.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|+++++.. +++...|...+....
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 88888888888888888888888874 444 32 68888888888888888888888888753 234444443333322
Q ss_pred -hcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHH
Q 037510 634 -RLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFS 712 (806)
Q Consensus 634 -~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 712 (806)
..|++++|..+|+++++..+ .+...|..++..+.+.|++++|..+|+
T Consensus 180 ~~~~~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~ 227 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKYG--------------------------------DIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHT--------------------------------TCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC--------------------------------CcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36888888888888876532 256678888888888888888888888
Q ss_pred HHHHCC-CCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 713 ALLLTG-FSPD--NFTYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 713 ~~~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
++++.. +.|+ ...|..++..+.+.|+.++|..+++++.+.
T Consensus 228 ~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 228 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888852 3554 347777888888888888888888888873
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=7.3e-12 Score=126.29 Aligned_cols=213 Identities=15% Similarity=0.063 Sum_probs=167.7
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-------CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHc------
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTM-------GLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEK------ 616 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 616 (806)
....++..+...+...|++++|...++++.+. ........+..+...|...|++++|...++++++.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34677888999999999999999999998873 22334567888889999999999999999999864
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHH
Q 037510 617 GFSP-NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVI 695 (806)
Q Consensus 617 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 695 (806)
+-.| ....+..+...+...|++++|...++++.+.... ......+....++..++
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------------------------~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK------------------------VLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH------------------------hcCCCChHHHHHHHHHH
Confidence 2222 3667888999999999999999999998864100 00000012345788899
Q ss_pred HHHHhcCChhhHHHHHHHHHHC------CCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------
Q 037510 696 AGICKSGNVTDARRIFSALLLT------GFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKIN--------------- 753 (806)
Q Consensus 696 ~~~~~~g~~~~A~~~~~~~~~~------g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------- 753 (806)
..|...|++++|++.|+++.+. +..|+. .++..++.+|...|++++|++.++++++..
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 9999999999999999999874 224544 388999999999999999999999998621
Q ss_pred --------------------------------CCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 754 --------------------------------LVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 754 --------------------------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
..| +..++..++.+|.+.|++++|.+++++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122 456788899999999999999999999876
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.38 E-value=2.8e-11 Score=115.62 Aligned_cols=209 Identities=11% Similarity=-0.004 Sum_probs=160.9
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLV 629 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 629 (806)
.++..+......+...|++++|.+.|++..+....++...+..+..++...|++++|++.+++.++.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888889999999999999999999887543677777778888999999999999999999863 33567888899
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCCh-------HHHHHHHHHHHhcC
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNY-------VVYNIVIAGICKSG 702 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g 702 (806)
.++...|++++|...++++++..+. +. .+|..++..+...|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~--------------------------------~~~~~~~~~~~~~~~g~~~~~~~ 131 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG--------------------------------NATIEKLYAIYYLKEGQKFQQAG 131 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT--------------------------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC--------------------------------cHHHHHHHHHHHHHHhHHHHHhc
Confidence 9999999999999999999876532 44 55888888899999
Q ss_pred ChhhHHHHHHHHHHCCCCCC--H-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHH
Q 037510 703 NVTDARRIFSALLLTGFSPD--N-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 703 ~~~~A~~~~~~~~~~g~~p~--~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 779 (806)
++++|++.|+++++ ..|+ . .+|..++.+|...|+ ..++++...+ ..+...|..+ .....|.+++|..
T Consensus 132 ~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~ 201 (228)
T 4i17_A 132 NIEKAEENYKHATD--VTSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVD 201 (228)
T ss_dssp CHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHH
Confidence 99999999999998 6787 5 478888888866543 4455555532 2233344333 2445677899999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHhh
Q 037510 780 LFCKLRQKGLTPTVVTYNILIDGY 803 (806)
Q Consensus 780 ~~~~m~~~g~~p~~~~~~~li~~~ 803 (806)
++++..+ +.|+......++...
T Consensus 202 ~~~~a~~--l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 202 YLGEAVT--LSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHhh--cCCCCHHHHHHHHHH
Confidence 9999998 788876666655443
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=1.3e-11 Score=136.59 Aligned_cols=163 Identities=20% Similarity=0.156 Sum_probs=102.3
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAIN 666 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 666 (806)
...|+.+...|.+.|++++|++.|+++++.. +-+...+..+..+|.+.|++++|+..|+++++.++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~------------ 75 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT------------ 75 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------
Confidence 4456666666666666666666666666642 224556666666666666666666666666654321
Q ss_pred hhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHH
Q 037510 667 VDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNL 745 (806)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 745 (806)
+..+|..++.+|...|++++|++.|++.++ +.|+. .+|+.++.+|.+.|++++|++.
T Consensus 76 --------------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~ 133 (723)
T 4gyw_A 76 --------------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIAS 133 (723)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455666666666666666666666666666 55654 3666666666666666666666
Q ss_pred HHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 746 RDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 746 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
|+++++ +.| +...+..|+.+|...|++++|.+.++++.+
T Consensus 134 ~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 134 YRTALK--LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHH--HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHH--hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 666666 345 445666666666666666666666666543
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.36 E-value=1.5e-11 Score=131.22 Aligned_cols=216 Identities=11% Similarity=-0.049 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCC
Q 037510 489 MTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNL-EEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRE 567 (806)
Q Consensus 489 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 567 (806)
++++...+++..... +.+...+..+...+...|++ ++|.+.+++.. .. .+.+...+..+...|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al---------~~-~p~~~~a~~~lg~~~~~~g~ 152 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAV---------KL-EPELVEAWNQLGEVYWKKGD 152 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHH---------HH-CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHH---------hh-CCCCHHHHHHHHHHHHHcCC
Confidence 556666666655443 34677777788888888888 88888887762 22 12346778888888888888
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHcc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---
Q 037510 568 LTSLVDLLAEMQTMGLYPNIVTYGALISGWCDA---------GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRL--- 635 (806)
Q Consensus 568 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 635 (806)
+++|.+.|++..+. .|+...+..+...|... |++++|++.|+++++.. +.+...|..+..+|...
T Consensus 153 ~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 153 VTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHh
Confidence 88888888888876 46778888888888888 99999999999999874 44688899999999998
Q ss_pred -----CCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 037510 636 -----GKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRI 710 (806)
Q Consensus 636 -----g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 710 (806)
|++++|...|+++++.++.. ..+..+|..++.+|...|++++|.+.
T Consensus 230 ~~~~~g~~~~A~~~~~~al~~~p~~-----------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~ 280 (474)
T 4abn_A 230 TGQNPKISQQALSAYAQAEKVDRKA-----------------------------SSNPDLHLNRATLHKYEESYGEALEG 280 (474)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHCGGG-----------------------------GGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHhCCCc-----------------------------ccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999864310 02677999999999999999999999
Q ss_pred HHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 711 FSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEM 749 (806)
Q Consensus 711 ~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (806)
|+++.+ +.|+.. ++..+..++...|++++|++.+.++
T Consensus 281 ~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 281 FSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999 678764 8999999999999999999866543
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=2.1e-10 Score=115.10 Aligned_cols=216 Identities=10% Similarity=0.014 Sum_probs=108.7
Q ss_pred hhHHHHHHHhhhcCCCcChhhHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHCCCCC-CHhHHHHHHHHHH
Q 037510 139 KNALHVFDNMGKYGCIPSLRSCNCLLSNLVK-------NGEG-------YVALLVYEQMMRVGIVP-DVFTCSIVVNAYC 203 (806)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~ 203 (806)
++|+.+|++..+..+ .++..|..++..+.. .|+. ++|..+|++.++. +.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 577788888877543 367778777777653 3554 5666666666552 122 3345555556666
Q ss_pred hcCChhHHHHHHHHHHHcCCCcC-HH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCHHH
Q 037510 204 KEKSMEKALDFVKEMENLGFELN-VV-TYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYC-KQHKMEE 280 (806)
Q Consensus 204 ~~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 280 (806)
+.|++++|..+|+++.+. .|+ .. +|..++..+.+.|++++|..+|++..+..+ .+...|...+.... ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666553 222 22 455555555555555555555555555332 22223322222211 1355555
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--ChhHHHHHHHHHHhcCCHhHHHHHHH
Q 037510 281 AENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTG-LEM--NLLICNSLINGYCKLGQVCEAKRVLR 357 (806)
Q Consensus 281 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 357 (806)
|..+|++..+. .+.+...|..++..+.+.|++++|..+|++..... .+| ....|..++..+.+.|+.++|..+++
T Consensus 188 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 188 AFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555554443 12233444444444444555555555555544431 122 23344444444444444444444444
Q ss_pred HHhh
Q 037510 358 CMGD 361 (806)
Q Consensus 358 ~~~~ 361 (806)
++.+
T Consensus 266 ~a~~ 269 (308)
T 2ond_A 266 RRFT 269 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=6.3e-12 Score=126.79 Aligned_cols=168 Identities=15% Similarity=0.048 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHhhhc-------CCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 037510 122 PTVFDMILKIYAQKGMLKNALHVFDNMGKY-------GCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRV------GI 188 (806)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------~~ 188 (806)
..++..+...|...|++++|+..|+.+.+. .......++..+...+...|++++|+..|++.... +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456667777777777777777777777653 12223446666677777777777777777766553 11
Q ss_pred -CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc------CC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----
Q 037510 189 -VPDVFTCSIVVNAYCKEKSMEKALDFVKEMENL------GF-ELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEK---- 256 (806)
Q Consensus 189 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 256 (806)
.....++..+...+...|++++|...++++.+. +. +....++..+...+...|++++|...++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 112344555555566666666666666655442 11 112334445555555555555555555554442
Q ss_pred --CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 257 --GISR-TAVTYTTLTKGYCKQHKMEEAENMLRRMK 289 (806)
Q Consensus 257 --~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 289 (806)
+..| ...++..+...|...|++++|.+.++++.
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0001 12234444444444444444444444443
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=4.5e-10 Score=116.50 Aligned_cols=240 Identities=13% Similarity=-0.002 Sum_probs=175.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CC-CC
Q 037510 512 RTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEA-IVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTM----GL-YP 585 (806)
Q Consensus 512 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~-~p 585 (806)
......+...|++++|...++...... ...+ ......++..+...+...|+++.|...+++..+. +- .+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKEL-----PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTG-----GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHH-----hhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 344556778999999999999873210 0001 1113467788999999999999999999887652 11 11
Q ss_pred -CHhHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh
Q 037510 586 -NIVTYGALISGWCDAGMLNKAFKAYFDMIEK----GFSP-NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKY 659 (806)
Q Consensus 586 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 659 (806)
...+++.+...|...|++++|.+.++++++. +..+ ...++..++.+|...|++++|...+++.++....
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~----- 254 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE----- 254 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-----
Confidence 2456778888999999999999999998863 1111 2457788999999999999999999998862100
Q ss_pred hhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC---CCCH-HhHHHHHHHHHh
Q 037510 660 MASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGF---SPDN-FTYSTLIHGYAA 735 (806)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~~-~~~~~l~~~~~~ 735 (806)
...+....++..++.+|.+.|++++|...+++..+... .|.. ..+..+...|..
T Consensus 255 ----------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~ 312 (378)
T 3q15_A 255 ----------------------KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE 312 (378)
T ss_dssp ----------------------HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS
T ss_pred ----------------------hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 00011355788899999999999999999999988421 2322 356777788888
Q ss_pred cCC---HHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 736 VGD---INEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 736 ~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
.|+ +.+|+.++++. +..| ....+..++..|...|++++|..++++..+
T Consensus 313 ~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 313 TVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888 78888887762 2233 334667889999999999999999999865
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=1e-09 Score=113.80 Aligned_cols=236 Identities=13% Similarity=-0.012 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChh----hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HhH
Q 037510 124 VFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLR----SCNCLLSNLVKNGEGYVALLVYEQMMRVGIV-PD----VFT 194 (806)
Q Consensus 124 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-~~----~~~ 194 (806)
+.......+...|++++|...++.........+.. +++.+...+...|++++|...+++....... .+ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34445556778899999999988877654322222 4566677778888888888888877653111 11 123
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc----CCC--c-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----Chh
Q 037510 195 CSIVVNAYCKEKSMEKALDFVKEMENL----GFE--L-NVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISR----TAV 263 (806)
Q Consensus 195 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~ 263 (806)
+..+...+...|++++|...+++..+. +.. | ...++..+...+...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 445566677777777777777776542 111 2 23345556666777777777777777665532211 123
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hhH
Q 037510 264 TYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYG-----VLIDGYCKVGKVDEAIRVLNEMLKTGLEMN---LLI 335 (806)
Q Consensus 264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~ 335 (806)
++..+...+...|++++|...+++.........+...+. ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 455556666666666666666666543211111101111 112224455556665555555443221110 112
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHH
Q 037510 336 CNSLINGYCKLGQVCEAKRVLRCM 359 (806)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~~ 359 (806)
+..+...+...|++++|...+++.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444445555555555555443
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=1e-09 Score=113.78 Aligned_cols=275 Identities=12% Similarity=0.052 Sum_probs=184.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCC-CCHH
Q 037510 479 MIKGLCKMGKMTEAQKIFDKMKELGCLPNI----ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIV-PSID 553 (806)
Q Consensus 479 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~ 553 (806)
....+...|++++|...+++..+.....+. ..+..+...+...|++++|...++...... ...+.. ....
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~ 94 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-----RQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-----HhcCcHHHHHH
Confidence 344555677888888887777665422222 245566677778888888888887663210 011100 0123
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCC--C-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--C--CH
Q 037510 554 MYNYLISVAFKSRELTSLVDLLAEMQTM----GLY--P-NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFS--P--NV 622 (806)
Q Consensus 554 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~--~~ 622 (806)
.+..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.++.... + ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3566778888999999999998887652 222 2 2345666778889999999999999998874221 1 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChH-HH--HHHHHHHH
Q 037510 623 AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYV-VY--NIVIAGIC 699 (806)
Q Consensus 623 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~l~~~~~ 699 (806)
..+..+...+...|++++|...+++.......+. .+... .. ...+..+.
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 226 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK----------------------------YHSDWISNANKVRVIYWQ 226 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC----------------------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC----------------------------cchhHHHHHHHHHHHHHH
Confidence 5677888889999999999999999875421110 01000 11 13344577
Q ss_pred hcCChhhHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCh-hcHHHHHHHHHhc
Q 037510 700 KSGNVTDARRIFSALLLTGFSPD---NFTYSTLIHGYAAVGDINEAFNLRDEMLKI----NLVPNI-ATYNSLVSGLCNS 771 (806)
Q Consensus 700 ~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~ 771 (806)
..|++++|...+++..+....+. ...+..++..+...|++++|...++++... |..++. ..+..+..++...
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 89999999999998876321111 225677888999999999999999988762 211222 3566777888999
Q ss_pred CCHHHHHHHHHHHHH
Q 037510 772 GELDRAKRLFCKLRQ 786 (806)
Q Consensus 772 g~~~~A~~~~~~m~~ 786 (806)
|+.++|...+++...
T Consensus 307 g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 307 GRKSDAQRVLLDALK 321 (373)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999888654
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=2.5e-10 Score=108.86 Aligned_cols=172 Identities=11% Similarity=0.017 Sum_probs=112.3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLV 629 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 629 (806)
++...+..+..++...|++++|.+.+++..+.. +.+...|..+...|...|++++|++.+++.++.. +.+...+..+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~ 117 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYA 117 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHH
Confidence 666777778999999999999999999998863 2245678888889999999999999999999863 33566666677
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCC--ChHHHHHHHHHHHhcCChhhH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVP--NYVVYNIVIAGICKSGNVTDA 707 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 707 (806)
.++...|.......-+++++. .+..... ..+. +..+|..++.+|...|
T Consensus 118 ~~~~~~g~~~~~~~~~~~A~~------------------------~~~~al~-~~p~~~~~~~~~~l~~~~~~~~----- 167 (228)
T 4i17_A 118 IYYLKEGQKFQQAGNIEKAEE------------------------NYKHATD-VTSKKWKTDALYSLGVLFYNNG----- 167 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH------------------------HHHHHTT-SSCHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHhHHHHHhccHHHHHH------------------------HHHHHHh-cCCCcccHHHHHHHHHHHHHHH-----
Confidence 777766654433222222221 1111111 1123 3567778888886544
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 708 RRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 708 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
...++++...+ ..+...|..+. ....+.+++|+..++++++ +.|+.
T Consensus 168 ~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~ 213 (228)
T 4i17_A 168 ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNR 213 (228)
T ss_dssp HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCC
Confidence 44556666532 12233443332 3455678999999999998 45643
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=3.9e-11 Score=110.24 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=105.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhh
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVD 668 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~ 668 (806)
.+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------- 73 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--------------- 73 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------
Confidence 34455555666667777776666665542 33556666666667777777777777777665431
Q ss_pred HHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHH
Q 037510 669 AQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRD 747 (806)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 747 (806)
.+..++..++..+...|++++|.+.++++.+ ..|+ ...+..++..+...|++++|++.++
T Consensus 74 -----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 74 -----------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp -----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 2455666677777777777777777777766 3343 3466677777777777777777777
Q ss_pred HHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 748 EMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 748 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
++.+.. ..+...+..++.++...|++++|.++++++.+
T Consensus 135 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 135 IALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777642 22456667777777777777777777777665
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=1e-10 Score=129.53 Aligned_cols=165 Identities=17% Similarity=0.138 Sum_probs=149.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037510 551 SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVS 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 630 (806)
+...++.|...+.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.|+++++.. +.+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46789999999999999999999999999863 2347789999999999999999999999999863 346889999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 037510 631 TLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRI 710 (806)
Q Consensus 631 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 710 (806)
+|.+.|++++|++.|+++++.++. +..+|+.++.+|...|++++|++.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~--------------------------------~~~a~~~Lg~~~~~~g~~~eAi~~ 133 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA--------------------------------FADAHSNLASIHKDSGNIPEAIAS 133 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--------------------------------CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999986532 677999999999999999999999
Q ss_pred HHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 711 FSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 711 ~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|+++++ +.|+.. +|..++.+|...|++++|.+.++++++
T Consensus 134 ~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 134 YRTALK--LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHH--HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHH--hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 999999 789864 899999999999999999999999876
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=7.9e-10 Score=114.65 Aligned_cols=163 Identities=12% Similarity=-0.016 Sum_probs=89.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----ChHhHH
Q 037510 233 LIDGYVSLGDLNGAKRVLEWTCEKGIS-R----TAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIV-----DEYAYG 302 (806)
Q Consensus 233 li~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 302 (806)
....+...|++++|...|++..+.... + ...++..+...|...|++++|+..+++..+.....+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344455667777777777766543110 1 134556666666677777777766666554211111 133455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----CCC-CChhHHHHHHHHHHhcCCHhHHHHHHHHHhh-----CCCCCChhcHH
Q 037510 303 VLIDGYCKVGKVDEAIRVLNEMLKT----GLE-MNLLICNSLINGYCKLGQVCEAKRVLRCMGD-----WNLRPDSFSFN 372 (806)
Q Consensus 303 ~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 372 (806)
.+...+...|++++|.+.+++..+. +.. ....++..+...|...|++++|+..|++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 6666666667777776666665542 111 1123455566666666666666666665544 21 22244455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 373 TLVDGYCRECDMTEAFRLCAEMLR 396 (806)
Q Consensus 373 ~li~~~~~~g~~~~a~~~~~~m~~ 396 (806)
.+...+.+.|++++|...+++..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555566666666666666665554
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=1.5e-10 Score=114.76 Aligned_cols=177 Identities=18% Similarity=0.096 Sum_probs=137.0
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh
Q 037510 586 NIVTYGALISGWCDAGMLNKAFKAYFDMIEK------GFSP-NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLK 658 (806)
Q Consensus 586 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 658 (806)
...++..+...|...|++++|...++++++. +-.| ...++..+..++...|++++|...++++++....
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---- 117 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK---- 117 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH----
Confidence 3567788888899999999999999988864 2222 3567888999999999999999999998764100
Q ss_pred hhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC------CCCCCH-HhHHHHHH
Q 037510 659 YMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT------GFSPDN-FTYSTLIH 731 (806)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~~-~~~~~l~~ 731 (806)
......+....++..++..|...|++++|...++++.+. +-.|+. .++..++.
T Consensus 118 --------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 118 --------------------VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp --------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred --------------------HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 000000124567888999999999999999999999884 114544 48899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC-----------------------------------------------CCC-ChhcHHH
Q 037510 732 GYAAVGDINEAFNLRDEMLKIN-----------------------------------------------LVP-NIATYNS 763 (806)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~~-----------------------------------------------~~p-~~~~~~~ 763 (806)
+|...|++++|++.++++++.. ..| ...++..
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRS 257 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999999999998630 112 3446788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 037510 764 LVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 764 l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
++.+|.+.|++++|..++++..+
T Consensus 258 la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 258 LGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=2.1e-09 Score=98.51 Aligned_cols=165 Identities=13% Similarity=0.077 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAY 202 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 202 (806)
..+..+...+...|++++|+..|+.+.+..+ .+..++..+...+...|++++|...|+++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 4556677778888888888888888877643 366778888888888888888888888887753 23566677777777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 037510 203 CKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAE 282 (806)
Q Consensus 203 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 282 (806)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHH
Confidence 78888888888888777653 34566777777777777777777777777776543 35666777777777777777777
Q ss_pred HHHHHHHhc
Q 037510 283 NMLRRMKEE 291 (806)
Q Consensus 283 ~~~~~~~~~ 291 (806)
+.+++..+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 777776553
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.16 E-value=4.4e-10 Score=105.11 Aligned_cols=136 Identities=13% Similarity=0.047 Sum_probs=108.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhh
Q 037510 627 KLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTD 706 (806)
Q Consensus 627 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 706 (806)
.+..++.+.|++++|...+++.++.++. +..++..++.+|...|++++
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~--------------------------------~~~~~~~lg~~~~~~g~~~~ 106 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN--------------------------------NVDCLEACAEMQVCRGQEKD 106 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC--------------------------------CHHHHHHHHHHHHHcCCHHH
Confidence 3888999999999999999999987533 67899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 707 ARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGD--INEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCK 783 (806)
Q Consensus 707 A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 783 (806)
|+..|+++++ +.|+. .+|..++.+|...|+ .+++...+++... ..|....+..+..++...|++++|...|++
T Consensus 107 A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~ 182 (208)
T 3urz_A 107 ALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQK 182 (208)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999 77876 489999999877654 4556666666543 233333455667788889999999999999
Q ss_pred HHHCCCCCCHhhHHHHH
Q 037510 784 LRQKGLTPTVVTYNILI 800 (806)
Q Consensus 784 m~~~g~~p~~~~~~~li 800 (806)
.++ +.|+......+-
T Consensus 183 al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 183 VIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HTT--TSCCHHHHHHHH
T ss_pred HHH--hCCCHHHHHHHH
Confidence 998 789877666554
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=1e-09 Score=108.93 Aligned_cols=241 Identities=15% Similarity=0.038 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--C-ChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCC
Q 037510 491 EAQKIFDKMKELGCLPNIITYRTLSDGYCKV--G-NLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRE 567 (806)
Q Consensus 491 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 567 (806)
+|.+++.+..+.- ++....| .+.+. + ++++|...++.. +..|...|+
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a------------------------~~~~~~~g~ 52 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-----KLFSGSDSYKFEEAADLCVQA------------------------ATIYRLRKE 52 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-----HHHSCCSHHHHHHHHHHHHHH------------------------HHHHHHTTC
T ss_pred cHHHHHHHHHHHh-CcCCCcc-----hhcCCCCCccHHHHHHHHHHH------------------------HHHHHHcCC
Confidence 4666677666642 2211112 12232 2 478888777654 456788999
Q ss_pred HhHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhc-C
Q 037510 568 LTSLVDLLAEMQTM----GLYPN-IVTYGALISGWCDAGMLNKAFKAYFDMIEKGF---SP--NVAICSKLVSTLCRL-G 636 (806)
Q Consensus 568 ~~~a~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-g 636 (806)
+++|.+.|.+..+. |-.++ ..+|+.+..+|...|++++|+..+++.++... .+ -..++..+...|... |
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg 132 (292)
T 1qqe_A 53 LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH 132 (292)
T ss_dssp THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999987653 32222 46788999999999999999999999886311 11 145788899999996 9
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 037510 637 KIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLL 716 (806)
Q Consensus 637 ~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 716 (806)
++++|+..+++.++........ .....+++.++..|...|++++|+..|+++.+
T Consensus 133 ~~~~A~~~~~~Al~~~~~~~~~--------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 133 DYAKAIDCYELAGEWYAQDQSV--------------------------ALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCh--------------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999988642110000 00134688899999999999999999999999
Q ss_pred CCCCCCHH--------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh------cHHHHHHHHH--hcCCHHHHHHH
Q 037510 717 TGFSPDNF--------TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIA------TYNSLVSGLC--NSGELDRAKRL 780 (806)
Q Consensus 717 ~g~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~ 780 (806)
..|+.. +|..++.++...|++++|+..|++.++ +.|+.. .+..++.++. ..+++++|+..
T Consensus 187 --~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~ 262 (292)
T 1qqe_A 187 --SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKE 262 (292)
T ss_dssp --TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred --HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445431 577888999999999999999999987 455422 2344556664 45778999998
Q ss_pred HHHHHHCCCCCCH
Q 037510 781 FCKLRQKGLTPTV 793 (806)
Q Consensus 781 ~~~m~~~g~~p~~ 793 (806)
|+++.. +.|+.
T Consensus 263 ~~~~~~--l~~~~ 273 (292)
T 1qqe_A 263 FDNFMR--LDKWK 273 (292)
T ss_dssp HTTSSC--CCHHH
T ss_pred hccCCc--cHHHH
Confidence 887765 55544
No 88
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.12 E-value=6.1e-09 Score=97.54 Aligned_cols=179 Identities=13% Similarity=-0.011 Sum_probs=147.6
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 037510 569 TSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLG----KIDEANIF 644 (806)
Q Consensus 569 ~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 644 (806)
.+|.+.|++..+.| ++..+..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|..+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677788888764 67788888888989999999999999999875 67778888888887 6 89999999
Q ss_pred HHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCC
Q 037510 645 LQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK----SGNVTDARRIFSALLLTGFS 720 (806)
Q Consensus 645 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~ 720 (806)
|++..+.+ ++..+..|...|.. .+++++|++.|++..+. .
T Consensus 76 ~~~A~~~g----------------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~ 119 (212)
T 3rjv_A 76 AEKAVEAG----------------------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--S 119 (212)
T ss_dssp HHHHHHTT----------------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--T
T ss_pred HHHHHHCC----------------------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--C
Confidence 99998765 55688888888887 88999999999999984 4
Q ss_pred CC---HHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc-C-----CHHHHHHHHHHHHHC
Q 037510 721 PD---NFTYSTLIHGYAA----VGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNS-G-----ELDRAKRLFCKLRQK 787 (806)
Q Consensus 721 p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~ 787 (806)
|+ ..++..|+..|.. .+++++|+.+|+++.+. ..++..+..|...|... | +.++|..++++..+.
T Consensus 120 ~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 120 ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 53 5688899999988 88999999999999984 34666788888888754 3 899999999999987
Q ss_pred CCCCC
Q 037510 788 GLTPT 792 (806)
Q Consensus 788 g~~p~ 792 (806)
|...-
T Consensus 198 g~~~A 202 (212)
T 3rjv_A 198 GFDTG 202 (212)
T ss_dssp TCHHH
T ss_pred CCHHH
Confidence 75443
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=2.3e-08 Score=96.51 Aligned_cols=189 Identities=11% Similarity=-0.001 Sum_probs=138.5
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037510 571 LVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGF-SPNVAICSKLVSTLCRLGKIDEANIFLQKMV 649 (806)
Q Consensus 571 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 649 (806)
|+..+++..+.+ .++..++..+..++...|++++|++.+.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777776654 45666667788889999999999999999887653 2356777888999999999999999999998
Q ss_pred hCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHH--HHhcC--ChhhHHHHHHHHHHCCCCCCHHh
Q 037510 650 DFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAG--ICKSG--NVTDARRIFSALLLTGFSPDNFT 725 (806)
Q Consensus 650 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~g~~p~~~~ 725 (806)
+.... ... .+..+...|+.+ ....| ++++|..+|+++.+ ..|+..+
T Consensus 164 ~~~~d--~~~--------------------------~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~ 213 (310)
T 3mv2_B 164 NAIED--TVS--------------------------GDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKT 213 (310)
T ss_dssp HHSCH--HHH--------------------------HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHH
T ss_pred hcCcc--ccc--------------------------cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCccc
Confidence 75320 000 012333444444 33334 89999999999987 5677444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC---CC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 726 YSTLIHGYAAVGDINEAFNLRDEMLKI-----NL---VP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
-..+..++.+.|++++|.+.++.+.+. +. .| |+.++..+|......|+ +|.++++++.+ ..|+..
T Consensus 214 ~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 214 QLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 344555899999999999999987652 11 24 67788778877777887 99999999998 677643
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=2.7e-09 Score=104.05 Aligned_cols=173 Identities=10% Similarity=0.018 Sum_probs=137.3
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhh
Q 037510 586 NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN---VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMAS 662 (806)
Q Consensus 586 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 662 (806)
+...+..+...+.+.|++++|+..|+++++.. +.+ ...+..++.++.+.|++++|...|+++++..+..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~------- 85 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID------- 85 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC-------
Confidence 45566677777888999999999999988763 223 6778888899999999999999999998865321
Q ss_pred hhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh--------cCChhhHHHHHHHHHHCCCCCCHH-hH-------
Q 037510 663 SAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK--------SGNVTDARRIFSALLLTGFSPDNF-TY------- 726 (806)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~g~~p~~~-~~------- 726 (806)
+....++..++.++.. .|++++|+..|+++++ ..|+.. ..
T Consensus 86 ----------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~~~ 141 (261)
T 3qky_A 86 ----------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQKIR 141 (261)
T ss_dssp ----------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHHHHH
T ss_pred ----------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHHHHHH
Confidence 1124567778888888 9999999999999999 567653 33
Q ss_pred ----------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhcHHHHHHHHHhc----------CCHHHHHHHHH
Q 037510 727 ----------STLIHGYAAVGDINEAFNLRDEMLKINLVPN----IATYNSLVSGLCNS----------GELDRAKRLFC 782 (806)
Q Consensus 727 ----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~ 782 (806)
..++..|.+.|++++|+..|+++++. .|+ ...+..++.+|... |++++|...++
T Consensus 142 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~ 219 (261)
T 3qky_A 142 ELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE 219 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH
Confidence 56789999999999999999999984 343 34677888888866 89999999999
Q ss_pred HHHHCCCCCCHh
Q 037510 783 KLRQKGLTPTVV 794 (806)
Q Consensus 783 ~m~~~g~~p~~~ 794 (806)
++.+ ..|+..
T Consensus 220 ~~~~--~~p~~~ 229 (261)
T 3qky_A 220 RLLQ--IFPDSP 229 (261)
T ss_dssp HHHH--HCTTCT
T ss_pred HHHH--HCCCCh
Confidence 9988 567653
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.07 E-value=2.5e-10 Score=100.16 Aligned_cols=142 Identities=10% Similarity=-0.019 Sum_probs=81.9
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHh
Q 037510 595 SGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAM 674 (806)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 674 (806)
..+...|++++|+..+++..... +.+...+..+...|.+.|++++|...|+++++.++.
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-------------------- 63 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-------------------- 63 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------
Confidence 34445566666666666655431 112334455666666666666666666666655422
Q ss_pred hhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHH-HHHHHHc
Q 037510 675 SLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNL-RDEMLKI 752 (806)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~ 752 (806)
++.+|..++.+|...|++++|+..|+++++ +.|+. .+|..++..|.+.|++++|.+. ++++++
T Consensus 64 ------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~- 128 (150)
T 4ga2_A 64 ------------DPKAHRFLGLLYELEENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK- 128 (150)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH-
T ss_pred ------------CHHHHHHHHHHHHHcCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-
Confidence 555666666666666666666666666666 55654 3666666666666666555543 466666
Q ss_pred CCCC-ChhcHHHHHHHHHhcCC
Q 037510 753 NLVP-NIATYNSLVSGLCNSGE 773 (806)
Q Consensus 753 ~~~p-~~~~~~~l~~~~~~~g~ 773 (806)
+.| ++.+|......+...|+
T Consensus 129 -l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 129 -LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp -HSTTCHHHHHHHHHHHHTCCC
T ss_pred -hCcCCHHHHHHHHHHHHHhCc
Confidence 345 44555555555555553
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=1.5e-09 Score=107.35 Aligned_cols=158 Identities=15% Similarity=0.025 Sum_probs=104.9
Q ss_pred HHcCChhhHHHHHHHhhhc-------CCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHhHHHHH
Q 037510 133 AQKGMLKNALHVFDNMGKY-------GCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRV------GIVP-DVFTCSIV 198 (806)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------~~~~-~~~~~~~l 198 (806)
...|++++|+..|++..+. ..+....++..+...+...|++++|+..|+++.+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3457777777777766542 22224567888888888888888888888887764 1122 34567777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc------C-CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------C-CCCChhh
Q 037510 199 VNAYCKEKSMEKALDFVKEMENL------G-FELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEK------G-ISRTAVT 264 (806)
Q Consensus 199 ~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~ 264 (806)
...+...|++++|...++++.+. . .+....++..+...|...|++++|...+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 77888888888888888877654 1 1223556777777777778888887777777654 1 1112445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037510 265 YTTLTKGYCKQHKMEEAENMLRRMKE 290 (806)
Q Consensus 265 ~~~li~~~~~~g~~~~a~~~~~~~~~ 290 (806)
+..+...|...|++++|.+.+++..+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666777777777777777766654
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.07 E-value=3.4e-09 Score=99.03 Aligned_cols=173 Identities=12% Similarity=0.049 Sum_probs=135.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HhHHHH----------------HHHHHHccCChHHHHHHHHHHHHc
Q 037510 554 MYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN-IVTYGA----------------LISGWCDAGMLNKAFKAYFDMIEK 616 (806)
Q Consensus 554 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~ 616 (806)
.+-.....+...|++++|...|++..+. .|+ ...|.. +..+|.+.|++++|+..|++.++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344556778999999999999999886 343 445666 888899999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHH
Q 037510 617 GFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIA 696 (806)
Q Consensus 617 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 696 (806)
. +.+...+..+..++...|++++|...|+++++.++. +..+|..++.
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--------------------------------~~~a~~~lg~ 130 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD--------------------------------NLAANIFLGN 130 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------------------------CHHHHHHHHH
Confidence 4 447889999999999999999999999999987533 6778999999
Q ss_pred HHHhcCC--hhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHH
Q 037510 697 GICKSGN--VTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLV 765 (806)
Q Consensus 697 ~~~~~g~--~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 765 (806)
+|...|+ ...+...+++... ..|....+..++.++...|++++|+..|+++++ +.|+......+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 131 YYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 8877664 4556667766654 334444666778888889999999999999998 678765444443
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=7.9e-08 Score=92.72 Aligned_cols=202 Identities=11% Similarity=0.072 Sum_probs=140.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCC-CCCHHHHHHHHHHHHhcCCHhH
Q 037510 492 AQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAI-VPSIDMYNYLISVAFKSRELTS 570 (806)
Q Consensus 492 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 570 (806)
|+..+++..+.+ .++..++..+..++...|++++|++++... ...+. .-+...+..++..+.+.|+.+.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~---------i~~~~~~~~lea~~l~vqi~L~~~r~d~ 154 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEG---------IDNDEAEGTTELLLLAIEVALLNNNVST 154 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------HTSSCSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH---------hccCCCcCcHHHHHHHHHHHHHCCCHHH
Confidence 667777776654 455666667778888888888888888755 22222 2356677778888888999999
Q ss_pred HHHHHHHHHHCCCCC-----CHhHHHHHHHHH--Hc--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037510 571 LVDLLAEMQTMGLYP-----NIVTYGALISGW--CD--AGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEA 641 (806)
Q Consensus 571 a~~~~~~~~~~g~~p-----~~~~~~~l~~~~--~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 641 (806)
|.+.+++|.+. .| +..+...+..++ .. .+++.+|+.+|+++.+. .|+..+...++.++.+.|++++|
T Consensus 155 A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eA 230 (310)
T 3mv2_B 155 ASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHH
Confidence 99999888775 55 244555555452 22 34899999999998765 45544444555588999999999
Q ss_pred HHHHHHHhhCCC--------CCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 037510 642 NIFLQKMVDFDF--------VPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSA 713 (806)
Q Consensus 642 ~~~~~~~~~~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 713 (806)
.+.++.+.+..+ .| .|+.++-.+|......|+ +|.+++++
T Consensus 231 e~~L~~l~~~~p~~~~k~~~~p------------------------------~~~~~LaN~i~l~~~lgk--~a~~l~~q 278 (310)
T 3mv2_B 231 QGIVELLLSDYYSVEQKENAVL------------------------------YKPTFLANQITLALMQGL--DTEDLTNQ 278 (310)
T ss_dssp HHHHHHHHSHHHHTTTCHHHHS------------------------------SHHHHHHHHHHHHHHTTC--TTHHHHHH
T ss_pred HHHHHHHHHhcccccccccCCC------------------------------CCHHHHHHHHHHHHHhCh--HHHHHHHH
Confidence 999997765311 12 266677666666666776 89999999
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 714 LLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 714 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+.+ ..|+..... ++.+....|+++..
T Consensus 279 L~~--~~P~hp~i~----------d~~~k~~~Fd~~~~ 304 (310)
T 3mv2_B 279 LVK--LDHEHAFIK----------HHQEIDAKFDELVR 304 (310)
T ss_dssp HHH--TTCCCHHHH----------HHHHHHHHHHHHHH
T ss_pred HHH--hCCCChHHH----------HHHHHHHHHHHHHH
Confidence 999 789876321 23455566666655
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=5e-09 Score=102.16 Aligned_cols=206 Identities=13% Similarity=0.023 Sum_probs=148.9
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CC-CHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN----IVTYGALISGWCDAGMLNKAFKAYFDMIEKGF-SP-NVA 623 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~ 623 (806)
.+...+-.+...+.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|++++|+..|+++++... .| ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456777788899999999999999999998863 33 56788888999999999999999999998632 12 255
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHH
Q 037510 624 ICSKLVSTLCR--------LGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVI 695 (806)
Q Consensus 624 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 695 (806)
.+..+..++.. .|++++|...|+++++..+...........+ ...... ....+..++
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~----~~~~~~-----------~~~~~~~la 155 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKI----RELRAK-----------LARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHH----HHHHHH-----------HHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHH----HHHHHH-----------HHHHHHHHH
Confidence 67788888988 9999999999999998754321110000000 000000 011246678
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCChh--
Q 037510 696 AGICKSGNVTDARRIFSALLLTGFSPDN----FTYSTLIHGYAAV----------GDINEAFNLRDEMLKINLVPNIA-- 759 (806)
Q Consensus 696 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~-- 759 (806)
..|.+.|++++|+..|+++++ ..|+. .++..++.+|... |++++|+..|+++++. .|+..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~ 231 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFD--AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPLL 231 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTHH
T ss_pred HHHHHccCHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChHH
Confidence 899999999999999999998 55652 3788888999876 8999999999999984 46432
Q ss_pred --cHHHHHHHHHhcCCHHH
Q 037510 760 --TYNSLVSGLCNSGELDR 776 (806)
Q Consensus 760 --~~~~l~~~~~~~g~~~~ 776 (806)
....+...+.+.|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 33444444444444443
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=6e-09 Score=89.48 Aligned_cols=128 Identities=20% Similarity=0.282 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
.+..++..+...|++++|..+++++.+.+. .+..++..++..+...|+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------------~~~~~~~~~a~~~~~~~~ 50 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP--------------------------------RSAEAWYNLGNAYYKQGD 50 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC--------------------------------cchhHHHHHHHHHHHhcC
Confidence 466778888899999999999999887542 256688889999999999
Q ss_pred hhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 704 VTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 782 (806)
+++|...++++.+ ..|+ ..++..++..+...|++++|++.++++.+.. ..+...+..++.++.+.|++++|..+++
T Consensus 51 ~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 51 YDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 9999999999998 4454 4588899999999999999999999999853 2367788889999999999999999999
Q ss_pred HHHH
Q 037510 783 KLRQ 786 (806)
Q Consensus 783 ~m~~ 786 (806)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9887
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.03 E-value=2.2e-09 Score=119.92 Aligned_cols=172 Identities=13% Similarity=0.018 Sum_probs=146.0
Q ss_pred HhcCCHhHHHHHHHHHH--------HCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037510 563 FKSRELTSLVDLLAEMQ--------TMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCR 634 (806)
Q Consensus 563 ~~~~~~~~a~~~~~~~~--------~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 634 (806)
...|++++|++.+++.. +. -+.+...+..+..++...|++++|++.|+++++.+ +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 43 13356678888899999999999999999999863 4478899999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHH
Q 037510 635 LGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSAL 714 (806)
Q Consensus 635 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (806)
.|++++|...|+++++.++. +...|..++.+|.+.|++++ ++.|+++
T Consensus 480 ~g~~~~A~~~~~~al~l~P~--------------------------------~~~~~~~lg~~~~~~g~~~~-~~~~~~a 526 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG--------------------------------ELAPKLALAATAELAGNTDE-HKFYQTV 526 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT--------------------------------CSHHHHHHHHHHHHHTCCCT-TCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC--------------------------------ChHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 99999999999999987532 66789999999999999999 9999999
Q ss_pred HHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCC
Q 037510 715 LLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSGE 773 (806)
Q Consensus 715 ~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 773 (806)
++ ..|+. .+|..++.+|.+.|++++|++.|+++++ +.|+ ...+..++.++...|+
T Consensus 527 l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 527 WS--TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HH--hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 99 67876 4899999999999999999999999988 5674 5677888888877665
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=1.8e-08 Score=95.42 Aligned_cols=89 Identities=15% Similarity=0.069 Sum_probs=70.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037510 695 IAGICKSGNVTDARRIFSALLLTGFSPDNF-TY-----------------STLIHGYAAVGDINEAFNLRDEMLKINLVP 756 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 756 (806)
...+...|++++|+..|+++++ ..|+.. ++ ..++..|.+.|++++|+..|+++++. .|
T Consensus 103 ~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p 178 (225)
T 2yhc_A 103 DRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YP 178 (225)
T ss_dssp -----CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--ST
T ss_pred chhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--Cc
Confidence 3344567899999999999999 667764 32 35677889999999999999999984 45
Q ss_pred Ch----hcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 757 NI----ATYNSLVSGLCNSGELDRAKRLFCKLRQK 787 (806)
Q Consensus 757 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 787 (806)
+. ..+..++.+|.+.|+.++|.+.++.+...
T Consensus 179 ~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 179 DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 32 46788999999999999999999999874
No 99
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.00 E-value=1.7e-08 Score=100.09 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhhc----CCCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037510 125 FDMILKIYAQKGMLKNALHVFDNMGKY----GCIPS-LRSCNCLLSNLVKNGEGYVALLVYEQMMR 185 (806)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 185 (806)
|......|...|++++|++.|++.... |..++ ..+|+.+..+|.+.|++++|+..|++.++
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 105 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344445566666677766666665443 11111 34566666666666666666666665544
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=1.6e-08 Score=86.75 Aligned_cols=128 Identities=20% Similarity=0.271 Sum_probs=98.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhh
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVD 668 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~ 668 (806)
.|..+...+...|++++|...++++.+.+ +.+...+..++..+...|++++|...++++...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------------- 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------------- 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC---------------
Confidence 45566777777888888888888887653 34567777778888888888888888888776542
Q ss_pred HHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHH
Q 037510 669 AQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRD 747 (806)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 747 (806)
.+..++..++..+...|++++|...++++.+ ..|+ ..++..++..+...|++++|.+.++
T Consensus 67 -----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 67 -----------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -----------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 2456777788888888888888888888887 4454 4577888888888888888888888
Q ss_pred HHHH
Q 037510 748 EMLK 751 (806)
Q Consensus 748 ~~~~ 751 (806)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 8877
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.97 E-value=7.8e-10 Score=96.96 Aligned_cols=130 Identities=11% Similarity=0.014 Sum_probs=106.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhH
Q 037510 628 LVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDA 707 (806)
Q Consensus 628 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 707 (806)
|+..+...|++++|+..+++.....+ .++..+..++..|.+.|++++|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p--------------------------------~~~~~~~~la~~y~~~~~~~~A 50 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR--------------------------------QKSIKGFYFAKLYYEAKEYDLA 50 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH--------------------------------HHHTTHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc--------------------------------ccHHHHHHHHHHHHHcCCHHHH
Confidence 44556677889999999998876431 1445677899999999999999
Q ss_pred HHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHH-HHHH
Q 037510 708 RRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRL-FCKL 784 (806)
Q Consensus 708 ~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~m 784 (806)
++.|++.++ +.|+. .+|..++.+|...|++++|+..|+++++ +.| ++..+..++..|.+.|++++|.+. +++.
T Consensus 51 ~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a 126 (150)
T 4ga2_A 51 KKYICTYIN--VQERDPKAHRFLGLLYELEENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERA 126 (150)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999999 78876 4999999999999999999999999999 567 678899999999999999887665 6888
Q ss_pred HHCCCCCCHhh
Q 037510 785 RQKGLTPTVVT 795 (806)
Q Consensus 785 ~~~g~~p~~~~ 795 (806)
.+ +.|+...
T Consensus 127 l~--l~P~~~~ 135 (150)
T 4ga2_A 127 AK--LFPGSPA 135 (150)
T ss_dssp HH--HSTTCHH
T ss_pred HH--hCcCCHH
Confidence 87 6776543
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=1.7e-08 Score=99.64 Aligned_cols=166 Identities=14% Similarity=0.028 Sum_probs=136.6
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhh
Q 037510 584 YPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASS 663 (806)
Q Consensus 584 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 663 (806)
+.+...+..+...+...|++++|...|+++++.. +.+...+..+...+.+.|++++|...++++....+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~--------- 183 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD--------- 183 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS---------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc---------
Confidence 3345567777888899999999999999999873 446788999999999999999999999998765421
Q ss_pred hhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHH
Q 037510 664 AINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEA 742 (806)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A 742 (806)
+..........+...++.++|+..|++.++ ..|+. ..+..++..|...|++++|
T Consensus 184 -----------------------~~~~~~~~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A 238 (287)
T 3qou_A 184 -----------------------TRYQGLVAQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEA 238 (287)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred -----------------------hHHHHHHHHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHH
Confidence 122233334457788889999999999999 67876 5899999999999999999
Q ss_pred HHHHHHHHHcCCCCC---hhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 743 FNLRDEMLKINLVPN---IATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 743 ~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
+..|.++++. .|+ ...+..|+..|...|+.++|...+++...
T Consensus 239 ~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 239 LELLFGHLRX--DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHH--CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhc--ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999994 453 56789999999999999999999988653
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.94 E-value=8.1e-09 Score=93.52 Aligned_cols=159 Identities=13% Similarity=0.063 Sum_probs=114.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhH
Q 037510 590 YGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDA 669 (806)
Q Consensus 590 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 669 (806)
+..+...+...|++++|...|+++++.. +.+...+..+..++...|++++|...++++....+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---------------- 71 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---------------- 71 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC----------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC----------------
Confidence 4455566778888888888888877652 34567788888888888888888888888765432
Q ss_pred HHHHhhhHHhhhcCCCCChHHHHHHHHH-HHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHH
Q 037510 670 QKIAMSLDESARSLCVPNYVVYNIVIAG-ICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRD 747 (806)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 747 (806)
++..+..+... +...+...+|+..+++.++ ..|+. ..+..++.++...|++++|+..|+
T Consensus 72 -----------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 72 -----------------DNSYKSLIAKLELHQQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------ChHHHHHHHHHHHHhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 22222222211 2233344557888888888 66764 578888888999999999999999
Q ss_pred HHHHcCCCCC---hhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 748 EMLKINLVPN---IATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 748 ~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
++++. .|+ ...+..++.++...|+.++|...|++...
T Consensus 133 ~~l~~--~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 133 NILKV--NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHTT--CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHh--CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 88884 443 45778888888899999999888887653
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.92 E-value=1.2e-08 Score=112.01 Aligned_cols=152 Identities=10% Similarity=0.008 Sum_probs=105.2
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037510 565 SRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIF 644 (806)
Q Consensus 565 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 644 (806)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.++.. +.+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467788888888877652 2346677788888888888888888888888753 34577888888888888888888888
Q ss_pred HHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-
Q 037510 645 LQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN- 723 (806)
Q Consensus 645 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~- 723 (806)
++++++.+. .+...+..++.+|...|++++|.+.|++..+ ..|+.
T Consensus 80 ~~~al~~~p--------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 125 (568)
T 2vsy_A 80 LQQASDAAP--------------------------------EHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEP 125 (568)
T ss_dssp HHHHHHHCT--------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHhcCC--------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH
Confidence 888877642 2566788888888888888888888888888 56654
Q ss_pred HhHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 037510 724 FTYSTLIHGYAAV---GDINEAFNLRDEMLKI 752 (806)
Q Consensus 724 ~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 752 (806)
.++..++.++... |++++|.+.++++++.
T Consensus 126 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 4778888888888 8888888888888874
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.92 E-value=7.3e-09 Score=115.70 Aligned_cols=156 Identities=14% Similarity=0.080 Sum_probs=138.0
Q ss_pred HccCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhH
Q 037510 598 CDAGMLNKAFKAYFDMI--------EKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDA 669 (806)
Q Consensus 598 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 669 (806)
...|++++|++.+++++ +. .+.+...+..+..++...|++++|...++++++.++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---------------- 464 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG---------------- 464 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC----------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc----------------
Confidence 67899999999999998 43 244567888899999999999999999999998653
Q ss_pred HHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 670 QKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDE 748 (806)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 748 (806)
.+...|..++.+|...|++++|++.|+++++ +.|+. ..|..++.+|.+.|++++ ++.|++
T Consensus 465 ----------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~ 525 (681)
T 2pzi_A 465 ----------------WRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQT 525 (681)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHH
T ss_pred ----------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHH
Confidence 2678999999999999999999999999999 77876 589999999999999999 999999
Q ss_pred HHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 749 MLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 749 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
+++ +.| +...|..++.+|.+.|++++|...++++.+ +.|+.
T Consensus 526 al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~ 567 (681)
T 2pzi_A 526 VWS--TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPP--TSRHF 567 (681)
T ss_dssp HHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT--TSTTH
T ss_pred HHH--hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc--cCccc
Confidence 999 456 677899999999999999999999999987 67774
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.90 E-value=8.6e-08 Score=90.76 Aligned_cols=185 Identities=12% Similarity=-0.055 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-C-HHHHHH
Q 037510 552 IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLY-PN-IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSP-N-VAICSK 627 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~ 627 (806)
...+..++..+.+.|++++|...|+++.+.... |. ...+..+..+|.+.|++++|+..|+++++..... . ...+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344556677889999999999999999985221 11 3567788899999999999999999999863221 1 124555
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChH
Q 037510 628 LVSTLCR------------------LGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYV 689 (806)
Q Consensus 628 l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (806)
+..++.. .|++++|...|+++++..+......... .........+ ..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~----~~l~~~~~~~-----------~~ 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT----KRLVFLKDRL-----------AK 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH----HHHHHHHHHH-----------HH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH----HHHHHHHHHH-----------HH
Confidence 5555554 5789999999999998764322110000 0000000000 01
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN----FTYSTLIHGYAAVGDINEAFNLRDEMLKIN 753 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (806)
....++..|.+.|++++|+..|+++++ ..|+. .++..++.+|.+.|++++|++.++.+...+
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 223567889999999999999999999 56664 368899999999999999999999998843
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.90 E-value=6.3e-09 Score=90.48 Aligned_cols=102 Identities=14% Similarity=-0.004 Sum_probs=74.1
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSL 764 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 764 (806)
+...+..++..+.+.|++++|+..|+++++ +.|+. ..|..++.+|...|++++|+..|+++++ +.| ++..|..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHH
Confidence 445666777777777778888887777777 56654 4777777777777888888888877777 445 56677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 765 VSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
+.+|.+.|++++|...|++..+ +.||..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 7777777888888887777776 455543
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.90 E-value=1.8e-07 Score=87.42 Aligned_cols=165 Identities=10% Similarity=-0.064 Sum_probs=138.5
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC----ChHHHHHHHHHHHHcCCCCCHHHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAG----MLNKAFKAYFDMIEKGFSPNVAIC 625 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~ 625 (806)
-+...+..+...+...+++++|.+.|++..+.| ++..+..+...|.. + ++++|++.|++..+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 467778889999999999999999999999875 66778888888887 6 8999999999998865 67788
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh-
Q 037510 626 SKLVSTLCR----LGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK- 700 (806)
Q Consensus 626 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 700 (806)
..+...|.. .+++++|..++++..+.+... .++..+..|...|..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~------------------------------~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESD------------------------------AAVDAQMLLGLIYASG 138 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH------------------------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc------------------------------chHHHHHHHHHHHHcC
Confidence 888888887 889999999999999876320 025688889999988
Q ss_pred ---cCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 037510 701 ---SGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAV-G-----DINEAFNLRDEMLKIN 753 (806)
Q Consensus 701 ---~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 753 (806)
.+++++|...|++..+. .++..++..|+..|... | ++++|+..|+++.+.|
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88999999999999994 34556788888888753 3 8999999999999876
No 109
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.89 E-value=1.5e-06 Score=92.19 Aligned_cols=388 Identities=7% Similarity=-0.051 Sum_probs=191.0
Q ss_pred HcC-ChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-hhHH
Q 037510 134 QKG-MLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKS-MEKA 211 (806)
Q Consensus 134 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~-~~~a 211 (806)
+.| +++.|+.+|+.+...- |. |+++.+..+|++.+.. .|+...|...+.-..+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 3888888888877642 22 8889999999988773 4688888777776666553 3556
Q ss_pred HHHHHHHHHc-CCC-cCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---cCCHHHHH
Q 037510 212 LDFVKEMENL-GFE-LNVVTYNSLIDGYV----SLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCK---QHKMEEAE 282 (806)
Q Consensus 212 ~~~~~~~~~~-~~~-~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~ 282 (806)
..+|+..... |.. .+...|...+..+. ..|+.+.+.++|++.... |.. .+..+-..|.. ......+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHhccccHH
Confidence 6777776653 432 35566776666543 235677788888888763 211 11122111111 11111121
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC--C-----HhHHHHH
Q 037510 283 NMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLG--Q-----VCEAKRV 355 (806)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~ 355 (806)
.++.+ . .+.+..|..+++++...-...+...|...+..-...+ - .+.+..+
T Consensus 144 ~~~~~--------------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 144 KIVGD--------------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHHHH--------------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHH--------------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 11111 1 1123334444443332100012334444443322111 0 2334556
Q ss_pred HHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037510 356 LRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVC 435 (806)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 435 (806)
|++..... +.+...|...+..+.+.|+.++|.+++++.... |....... .|....+.++. ++.+.+.-..
T Consensus 202 ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~ 271 (493)
T 2uy1_A 202 HNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC-
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHh
Confidence 66665532 444566666666666777777777777777765 33332211 11111111111 2221111000
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 436 PNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLS 515 (806)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 515 (806)
...+.+ .. .. ......+|...+....+.+..+.|..+|+.+ +.. ..+...|...+
T Consensus 272 ----------------~~~~~~-----~~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A 326 (493)
T 2uy1_A 272 ----------------GEAESA-----EK-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCA 326 (493)
T ss_dssp -------------------------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHH
T ss_pred ----------------hccchh-----hh-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHH
Confidence 000000 00 00 0011234555555555666677777777777 221 12334443322
Q ss_pred HHHHhc-CChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 037510 516 DGYCKV-GNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALI 594 (806)
Q Consensus 516 ~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~ 594 (806)
..-... ++.+.|..+|+... .. .+.+...+...+....+.|+.+.|..+|+.+. .....|...+
T Consensus 327 ~lE~~~~~d~~~ar~ife~al---------~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~ 391 (493)
T 2uy1_A 327 FIEYYATGSRATPYNIFSSGL---------LK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMI 391 (493)
T ss_dssp HHHHHHHCCSHHHHHHHHHHH---------HH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHHH---------HH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 222222 25777777777662 21 11223444555666667777777777777762 1455666666
Q ss_pred HHHHccCChHHHHHHHHHHHH
Q 037510 595 SGWCDAGMLNKAFKAYFDMIE 615 (806)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~~~~ 615 (806)
..-...|+.+.+..+++++.+
T Consensus 392 ~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 392 EYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 665667888777777777764
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.89 E-value=2e-08 Score=84.65 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLV 765 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 765 (806)
...+..++..|.+.|++++|++.|++.++ +.|+. .+|..++.+|.+.|++++|++.|+++++ +.| +...|..++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg 88 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHH
Confidence 45688899999999999999999999999 67865 5899999999999999999999999999 455 677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037510 766 SGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILID 801 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 801 (806)
.+|...|++++|.+.|++..+ +.|+......-+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~ 122 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQ--VDPSNEEAREGVR 122 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHH
Confidence 999999999999999999998 7887655444433
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.88 E-value=5.6e-07 Score=87.99 Aligned_cols=222 Identities=12% Similarity=0.084 Sum_probs=172.9
Q ss_pred hHHHHHHHHHHHhcccChhhhhcCCCC-CHHHHHHHHHHHHhcC--CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHH---
Q 037510 524 LEEAFKIKNLMERREILPSMEKEAIVP-SIDMYNYLISVAFKSR--ELTSLVDLLAEMQTMGLYPNIVTYGALISGW--- 597 (806)
Q Consensus 524 ~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~--- 597 (806)
.++|+.+++.+. . +.| ....|+.-...+...+ +++++++.++.+.... +-+..+|+.-...+
T Consensus 49 s~~aL~~t~~~L---------~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 49 SERALHITELGI---------N--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp SHHHHHHHHHHH---------H--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---------H--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHH
Confidence 457888887662 1 233 4566777777888888 9999999999999863 22455666555554
Q ss_pred -Hcc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCCChhhhhhhhhhhhHHH
Q 037510 598 -CDA---GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKID--EANIFLQKMVDFDFVPDLKYMASSAINVDAQK 671 (806)
Q Consensus 598 -~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 671 (806)
... +++++++++++++++.. +-+..+|..-..++.+.|.++ +++++++++++.++.
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~----------------- 178 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK----------------- 178 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-----------------
T ss_pred HHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-----------------
Confidence 444 78999999999999874 557888888888888999988 999999999987754
Q ss_pred HHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC------hhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHH-HH
Q 037510 672 IAMSLDESARSLCVPNYVVYNIVIAGICKSGN------VTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINE-AF 743 (806)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~-A~ 743 (806)
|..+|+.....+...|+ ++++++.++++++ ..|+. .+|+.+...+.+.|+..+ +.
T Consensus 179 ---------------N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~ 241 (306)
T 3dra_A 179 ---------------NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLE 241 (306)
T ss_dssp ---------------CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGH
T ss_pred ---------------CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHH
Confidence 77788888888888777 8999999999999 67865 589999999999887544 55
Q ss_pred HHHHHHHHcC-C-CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 744 NLRDEMLKIN-L-VPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 744 ~~~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
++++++.+.+ . ..++..+..++++|.+.|+.++|.++++.+.++ +.|..
T Consensus 242 ~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir 292 (306)
T 3dra_A 242 EFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIR 292 (306)
T ss_dssp HHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGG
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHH
Confidence 6777766532 1 236678889999999999999999999999853 45543
No 112
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.87 E-value=4.8e-06 Score=88.44 Aligned_cols=358 Identities=10% Similarity=-0.030 Sum_probs=180.3
Q ss_pred CChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHC-CCCC-CHhHHHHHHHHHH----hcCCh
Q 037510 136 GMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGE-GYVALLVYEQMMRV-GIVP-DVFTCSIVVNAYC----KEKSM 208 (806)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~A~~~~~~m~~~-~~~~-~~~~~~~l~~~~~----~~g~~ 208 (806)
|+++.+..+|++.... .|++..|...+....+.+. .+....+|+..+.. |..| +...|...+..+. ..|+.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7899999999999884 3799999998888877764 35567788877763 4333 4566666665443 34678
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 209 EKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRM 288 (806)
Q Consensus 209 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (806)
+.+..+|++.+......-...|...... .+..+...+.+++.+.. +.+..|..+++.+
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQI 163 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh---------------------HHHHHHHHHHHHH
Confidence 8899999999874211111222222111 11111222222221111 0111122222221
Q ss_pred HhcCCCCCChHhHHHHHHHHHhc--C-----ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 289 KEEDDVIVDEYAYGVLIDGYCKV--G-----KVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 289 ~~~~~~~~~~~~~~~li~~~~~~--g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
.... ...+...|...+.---.. | ..+.+..+|++++... +.+...|...+..+.+.|+.++|..+|++...
T Consensus 164 ~~~~-~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 164 QPLI-RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHH-HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHH-hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1100 000112232222221111 0 0123444555555432 22344455455555555555555555555554
Q ss_pred CCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 362 WNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQ---------GIEP---SVVTYNTLLKGLCRVGDVDEALHLWLMM 429 (806)
Q Consensus 362 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------g~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 429 (806)
. +.+...|.. |....+.++. ++.+.+. +..+ ....|...+....+.++.+.|..+|.+.
T Consensus 242 ~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 242 M--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp H--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 3 222222211 1111111111 1111110 0000 1234555556666667788888888877
Q ss_pred HHcCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 037510 430 LKRCVCPNEVGYCTLLDILFNKG-DFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNI 508 (806)
Q Consensus 430 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 508 (806)
.. ...+...|...+..-...+ +.+.|..+|+...+.. +.+...+...+......|+.+.|..+|+.+. ...
T Consensus 313 -~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~ 384 (493)
T 2uy1_A 313 -GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTS 384 (493)
T ss_dssp -TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBH
T ss_pred -hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHH
Confidence 32 1123334443333333333 5888888888877752 3334455666777777788888888888762 245
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037510 509 ITYRTLSDGYCKVGNLEEAFKIKNLMER 536 (806)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (806)
..|...+..-...|+.+.+.++++....
T Consensus 385 ~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 385 RMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677777766777888888887776643
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.87 E-value=2.3e-08 Score=90.48 Aligned_cols=161 Identities=12% Similarity=-0.025 Sum_probs=110.8
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH-HH
Q 037510 125 FDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNA-YC 203 (806)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~-~~ 203 (806)
+..+...+...|++++|+..|+...+..+ .+...+..+...+...|++++|+..|++..... |+...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 44566677888999999999998887653 367788888899999999999999998876643 344333222211 12
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 037510 204 KEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISR-TAVTYTTLTKGYCKQHKMEEAE 282 (806)
Q Consensus 204 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~ 282 (806)
..+....|...+++..+.. +.+...+..+...+...|++++|...|+++.+..+.+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2233344677777777653 3356777777777888888888888888777765432 3456777777777777777777
Q ss_pred HHHHHHH
Q 037510 283 NMLRRMK 289 (806)
Q Consensus 283 ~~~~~~~ 289 (806)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=3.3e-08 Score=98.77 Aligned_cols=189 Identities=8% Similarity=-0.052 Sum_probs=120.9
Q ss_pred HHHhcCCHhHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcC---CCC--CHHHHHHHHH
Q 037510 561 VAFKSRELTSLVDLLAEMQTM----GLYP-NIVTYGALISGWCDAGMLNKAFKAYFDMIEKG---FSP--NVAICSKLVS 630 (806)
Q Consensus 561 ~~~~~~~~~~a~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~--~~~~~~~l~~ 630 (806)
.|...|++++|...+.+..+. +-.+ -..+|+.+...|...|++++|+..|++.++.. -.+ ...++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555555544331 1000 12356666777778888888888888776521 011 1356777888
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 037510 631 TLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRI 710 (806)
Q Consensus 631 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 710 (806)
+|.. |++++|+..+++.++........ .....+++.++..|...|++++|+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~--------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~ 177 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERL--------------------------RQAAELIGKASRLLVRQQKFDEAAAS 177 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCCh--------------------------hHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8878 99999999999887532100000 00134788899999999999999999
Q ss_pred HHHHHHC----CCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh------hcHHHHHHHHHhcCCHHHHHH
Q 037510 711 FSALLLT----GFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI------ATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 711 ~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~ 779 (806)
|++.++. +..+.. .++..++.++...|++++|+..|++.+ . .|+. .....++.++ ..|+.+.+.+
T Consensus 178 ~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 178 LQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999873 111112 267778888888899999999999998 3 3422 1234455555 6788776666
Q ss_pred H
Q 037510 780 L 780 (806)
Q Consensus 780 ~ 780 (806)
+
T Consensus 254 ~ 254 (307)
T 2ifu_A 254 V 254 (307)
T ss_dssp H
T ss_pred H
Confidence 3
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.84 E-value=1.5e-06 Score=84.85 Aligned_cols=222 Identities=8% Similarity=-0.040 Sum_probs=141.7
Q ss_pred HcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH----Hhc--
Q 037510 134 QKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNG--EGYVALLVYEQMMRVGIVPDVFTCSIVVNAY----CKE-- 205 (806)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~----~~~-- 205 (806)
+...-++|++.++.++..++. +..+||.-...+...| ++++++..++.++...++ +..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 344456899999999887653 6668888888888888 899999999988885432 444555444444 344
Q ss_pred -CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-----
Q 037510 206 -KSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLN--GAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHK----- 277 (806)
Q Consensus 206 -g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----- 277 (806)
+++++++.+++.+.+.. +.+..+|+.-.-++.+.|.++ ++.+.++++.+.++ .|..+|+.....+...++
T Consensus 123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhh
Confidence 67788888888887764 446677777777777777777 77888888877665 467777766666665555
Q ss_pred -HHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCChhHHHHHHHHHHhcCCHhHHH
Q 037510 278 -MEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDE-AIRVLNEMLKTG--LEMNLLICNSLINGYCKLGQVCEAK 353 (806)
Q Consensus 278 -~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~ 353 (806)
++++++.++++... .+-|...|+.+...+.+.|+... +..+..++...+ -..+...+..+.+.|.+.|+.++|.
T Consensus 201 ~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 201 TIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 66666666666654 33455566666555555555332 333444333321 1124455555555565556666666
Q ss_pred HHHHHHhh
Q 037510 354 RVLRCMGD 361 (806)
Q Consensus 354 ~~~~~~~~ 361 (806)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665553
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.82 E-value=4.4e-08 Score=82.55 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=93.2
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHH
Q 037510 619 SPN-VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAG 697 (806)
Q Consensus 619 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 697 (806)
.|+ ...+...+..|.+.|++++|+..|+++++.++ .+..+|..++.+
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~~~~~ 56 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--------------------------------ENAILYSNRAAC 56 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------------------CCHHHHHHHhhH
Confidence 443 45667788889999999999999999987653 277889999999
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHH
Q 037510 698 ICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVS 766 (806)
Q Consensus 698 ~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 766 (806)
|.+.|++++|+..|++.++ +.|+. .+|..++.+|...|++++|++.|+++++ +.| +...+..|..
T Consensus 57 ~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 57 LTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQ--VDPSNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHH
Confidence 9999999999999999999 67876 4899999999999999999999999999 567 4555555543
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.81 E-value=1e-07 Score=82.82 Aligned_cols=103 Identities=11% Similarity=0.056 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh
Q 037510 621 NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK 700 (806)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 700 (806)
+...+..+...+.+.|++++|...|++++..++. ++..|..++.+|..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--------------------------------~~~~~~~lg~~~~~ 82 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--------------------------------NVDYIMGLAAIYQI 82 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------------CHHHHHHHHHHHHH
Confidence 3557778888899999999999999999887532 77889999999999
Q ss_pred cCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 037510 701 SGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIA 759 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 759 (806)
.|++++|+..|+++++ +.|+. .+|..++.+|...|++++|+..|+++++ +.|+..
T Consensus 83 ~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 83 KEQFQQAADLYAVAFA--LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp TTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 9999999999999999 77876 4888999999999999999999999998 456553
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.80 E-value=1.4e-07 Score=88.47 Aligned_cols=125 Identities=10% Similarity=-0.072 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCCh
Q 037510 625 CSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNV 704 (806)
Q Consensus 625 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 704 (806)
+..+...+...|++++|...+++++ . |+..++..++.+|...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~-------------------------------~~~~~~~~lg~~~~~~g~~ 53 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----D-------------------------------PHSRICFNIGCMYTILKNM 53 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----S-------------------------------CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----C-------------------------------CChHHHHHHHHHHHHcCCH
Confidence 4455666677777777777777663 1 2455777777777778888
Q ss_pred hhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------CC-ChhcHHHHHHHH
Q 037510 705 TDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINL--------------VP-NIATYNSLVSGL 768 (806)
Q Consensus 705 ~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------~p-~~~~~~~l~~~~ 768 (806)
++|+..|++.++ ..|+. .+|..++.+|...|++++|++.|+++++..- .| ....+..++.+|
T Consensus 54 ~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (213)
T 1hh8_A 54 TEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMY 131 (213)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHH
Confidence 888888877777 44554 4777777777788888888888887777320 11 125667777777
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 037510 769 CNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 769 ~~~g~~~~A~~~~~~m~~ 786 (806)
.+.|++++|.+.+++..+
T Consensus 132 ~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 132 AKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 788888888888887776
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.80 E-value=4.6e-07 Score=89.82 Aligned_cols=171 Identities=9% Similarity=0.049 Sum_probs=127.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhh
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN-----VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASS 663 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 663 (806)
.+...+..+...|++++|.+.+.+.++...... ...+..+...+...|++++|...++++.+........
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----- 151 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV----- 151 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch-----
Confidence 445567778899999999999999887532211 1234456667788899999999999988653221000
Q ss_pred hhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCC----H-HhHHHHHHHHHhcC
Q 037510 664 AINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT-GFSPD----N-FTYSTLIHGYAAVG 737 (806)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~----~-~~~~~l~~~~~~~g 737 (806)
.-...+++.++..|...|++++|+..|+++.+. ...|+ . .++..++..|...|
T Consensus 152 ---------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~ 210 (293)
T 2qfc_A 152 ---------------------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS 210 (293)
T ss_dssp ---------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh
Confidence 001348899999999999999999999999832 12233 1 48899999999999
Q ss_pred CHHHHHHHHHHHHHcC----CCC-ChhcHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 037510 738 DINEAFNLRDEMLKIN----LVP-NIATYNSLVSGLCNSGELDRA-KRLFCKLR 785 (806)
Q Consensus 738 ~~~~A~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 785 (806)
++++|+++++++++.. ... -..+|..++.+|.+.|++++| ..++++..
T Consensus 211 ~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 211 RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 9999999999998732 111 156788999999999999999 78788764
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.80 E-value=4.3e-08 Score=97.91 Aligned_cols=192 Identities=11% Similarity=0.042 Sum_probs=138.6
Q ss_pred cCCHhHHHHHHHHHHHC------CCCCCH----hHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CC--CHHHHHHHH
Q 037510 565 SRELTSLVDLLAEMQTM------GLYPNI----VTYGALISGWCDAGMLNKAFKAYFDMIEKGF---SP--NVAICSKLV 629 (806)
Q Consensus 565 ~~~~~~a~~~~~~~~~~------g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~ 629 (806)
.|++++|.+++++..+. +..++. ..|......|...|++++|...|.++.+... .+ -..+|..+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666655441 112332 2455566778899999999999999886311 11 145788889
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
.+|...|++++|...+++.++...... +. ..-..+++.+..+|.. |++++|+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g-------~~-------------------~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENG-------TP-------------------DTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTT-------CH-------------------HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcC-------CH-------------------HHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 999999999999999999875311100 00 0013478888999988 99999999
Q ss_pred HHHHHHHCCCCCC-------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhcHHHHHHHHHhcCCHHHH
Q 037510 710 IFSALLLTGFSPD-------NFTYSTLIHGYAAVGDINEAFNLRDEMLKI----NLVPN-IATYNSLVSGLCNSGELDRA 777 (806)
Q Consensus 710 ~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A 777 (806)
.|++.++. .|+ ..++..++..|.+.|++++|++.|+++++. +..+. ...+..++.++...|++++|
T Consensus 137 ~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 137 LYQQAAAV--FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH--HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999873 332 247889999999999999999999999873 11111 23667777888899999999
Q ss_pred HHHHHHHH
Q 037510 778 KRLFCKLR 785 (806)
Q Consensus 778 ~~~~~~m~ 785 (806)
...+++..
T Consensus 215 ~~~~~~al 222 (307)
T 2ifu_A 215 QKCVRESY 222 (307)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999987
No 121
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=8.5e-08 Score=105.33 Aligned_cols=149 Identities=9% Similarity=-0.025 Sum_probs=70.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhh
Q 037510 601 GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESA 680 (806)
Q Consensus 601 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (806)
|++++|.+.++++++.. +.+...+..+...+...|++++|...++++++.+..
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------------------------- 55 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-------------------------- 55 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT--------------------------
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------
Confidence 45555555555555431 223455555555555555555555555555554311
Q ss_pred hcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-Ch
Q 037510 681 RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NI 758 (806)
Q Consensus 681 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~ 758 (806)
+..++..++.+|...|++++|.+.|++.++ ..|+. .+|..++.+|...|++++|++.|+++++. .| +.
T Consensus 56 ------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 125 (568)
T 2vsy_A 56 ------HPEAVARLGRVRWTQQRHAEAAVLLQQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEP 125 (568)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred ------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH
Confidence 344555555555555555555555555555 34443 35555555555555555555555555552 23 34
Q ss_pred hcHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 037510 759 ATYNSLVSGLCNS---GELDRAKRLFCKLRQ 786 (806)
Q Consensus 759 ~~~~~l~~~~~~~---g~~~~A~~~~~~m~~ 786 (806)
..+..+..++... |+.++|.+.+++..+
T Consensus 126 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 4555555555555 555555555555554
No 122
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.77 E-value=4.3e-08 Score=82.83 Aligned_cols=106 Identities=9% Similarity=0.075 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------h
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN--------I 758 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~ 758 (806)
..++..++..+.+.|++++|++.|+++++ +.|+. .+|..++.+|...|++++|++.++++++. .|+ .
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a 83 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHH
Confidence 44788899999999999999999999999 77876 48999999999999999999999999983 332 1
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 037510 759 ATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNIL 799 (806)
Q Consensus 759 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 799 (806)
.+|..++.++...|++++|++.|++..+ ..||..+...|
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 3677888899999999999999999887 56777666554
No 123
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=1.8e-07 Score=92.28 Aligned_cols=162 Identities=10% Similarity=-0.016 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHH-HHHHH
Q 037510 158 RSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYN-SLIDG 236 (806)
Q Consensus 158 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~ 236 (806)
..+..+...+.+.|++++|+..|++.+...+ -+...+..+...+.+.|++++|...++++.... |+..... .....
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHH
Confidence 3444445555555555555555555554321 133444445555555555555555555544432 2222111 11122
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHH
Q 037510 237 YVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDE 316 (806)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 316 (806)
+.+.++.+.|...+++..+..+ .+...+..+...+...|++++|++.|+++.+...-..+...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 3344444445555555444432 244445555555555555555555555554432111123344444444545555554
Q ss_pred HHHHHHH
Q 037510 317 AIRVLNE 323 (806)
Q Consensus 317 a~~~~~~ 323 (806)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.75 E-value=2e-08 Score=87.61 Aligned_cols=96 Identities=17% Similarity=0.071 Sum_probs=86.9
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSL 764 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 764 (806)
+...+..++..+...|++++|+..|+++++ ..|+. ..|..++.+|...|++++|+..|+++++ +.| ++..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHH
Confidence 556778889999999999999999999999 67765 5899999999999999999999999999 456 67888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 037510 765 VSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
+.+|...|++++|.+.|++..+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999887
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=2.2e-06 Score=84.91 Aligned_cols=168 Identities=10% Similarity=0.052 Sum_probs=126.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhh
Q 037510 593 LISGWCDAGMLNKAFKAYFDMIEKGF-SPNV----AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINV 667 (806)
Q Consensus 593 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~ 667 (806)
.+..+...|++++|...+++..+... .|+. ..+..+...+...|++++|...++++++........
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~--------- 151 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV--------- 151 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---------
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---------
Confidence 45667889999999999999987421 2222 133356677778889999999999999853321100
Q ss_pred hHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC-----CCCCCHH-hHHHHHHHHHhcCCHHH
Q 037510 668 DAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT-----GFSPDNF-TYSTLIHGYAAVGDINE 741 (806)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~~~-~~~~l~~~~~~~g~~~~ 741 (806)
.-...+++.++.+|...|++++|+..|+++++. +..|... +|..++..|.+.|++++
T Consensus 152 -----------------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~ 214 (293)
T 3u3w_A 152 -----------------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE 214 (293)
T ss_dssp -----------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHH
Confidence 001336899999999999999999999999842 2222232 88999999999999999
Q ss_pred HHHHHHHHHHc----CCCCC-hhcHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 037510 742 AFNLRDEMLKI----NLVPN-IATYNSLVSGLCNSGE-LDRAKRLFCKLRQ 786 (806)
Q Consensus 742 A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 786 (806)
|++.++++++. +..+. ..+|..++.+|.+.|+ +++|.+.+++...
T Consensus 215 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 215 SLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999872 21222 5678899999999995 6999999998753
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=2.5e-07 Score=86.77 Aligned_cols=124 Identities=15% Similarity=0.019 Sum_probs=67.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHH
Q 037510 592 ALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQK 671 (806)
Q Consensus 592 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 671 (806)
.+...+...|++++|++.|++.+ .|+...+..++.++...|++++|...++++++.+.
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------------ 68 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK------------------ 68 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------------------
Confidence 33444455555555555555442 33455555555555555555555555555554321
Q ss_pred HHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC--------------CCCCH-HhHHHHHHHHHhc
Q 037510 672 IAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG--------------FSPDN-FTYSTLIHGYAAV 736 (806)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--------------~~p~~-~~~~~l~~~~~~~ 736 (806)
.+..++..++.+|...|++++|++.|+++.+.. ..|+. .++..++.+|...
T Consensus 69 --------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (213)
T 1hh8_A 69 --------------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 134 (213)
T ss_dssp --------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred --------------cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc
Confidence 134455555555555666666666665555521 11112 3566666666666
Q ss_pred CCHHHHHHHHHHHHH
Q 037510 737 GDINEAFNLRDEMLK 751 (806)
Q Consensus 737 g~~~~A~~~~~~~~~ 751 (806)
|++++|++.|+++++
T Consensus 135 g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 135 EEWKKAEEQLALATS 149 (213)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHH
Confidence 666666666666666
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.72 E-value=4.5e-08 Score=88.74 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=106.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHH
Q 037510 633 CRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFS 712 (806)
Q Consensus 633 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 712 (806)
...|++++|...+++.++..+ .+..+|..++.+|...|++++|+..|+
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~ 68 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP--------------------------------QNSEQWALLGEYYLWQNDYSNSLLAYR 68 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC--------------------------------SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCC--------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356778888888888876542 367789999999999999999999999
Q ss_pred HHHHCCCCCCH-HhHHHHHHH-HHhcCCH--HHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 713 ALLLTGFSPDN-FTYSTLIHG-YAAVGDI--NEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQK 787 (806)
Q Consensus 713 ~~~~~g~~p~~-~~~~~l~~~-~~~~g~~--~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 787 (806)
++.+ ..|+. ..+..++.+ |...|++ ++|+..++++++. .| +...+..++.+|...|++++|...++++.+
T Consensus 69 ~al~--~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~- 143 (177)
T 2e2e_A 69 QALQ--LRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMD- 143 (177)
T ss_dssp HHHH--HHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh-
Confidence 9998 56754 588888888 7899998 9999999999984 45 577888999999999999999999999998
Q ss_pred CCCCCHhhHHHHHHhh
Q 037510 788 GLTPTVVTYNILIDGY 803 (806)
Q Consensus 788 g~~p~~~~~~~li~~~ 803 (806)
..|+......++...
T Consensus 144 -~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 144 -LNSPRINRTQLVESI 158 (177)
T ss_dssp -TCCTTSCHHHHHHHH
T ss_pred -hCCCCccHHHHHHHH
Confidence 566655555555544
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.71 E-value=2.4e-07 Score=88.20 Aligned_cols=197 Identities=13% Similarity=-0.058 Sum_probs=145.9
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHH-------HHHHHccCChHHHHHHHHHHHHcCCCCC---------------
Q 037510 564 KSRELTSLVDLLAEMQTMGLYPNIVTYGAL-------ISGWCDAGMLNKAFKAYFDMIEKGFSPN--------------- 621 (806)
Q Consensus 564 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------- 621 (806)
..++...|.+.|.+..+.. +-....|..+ ...+...++..+++..+.+.+. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5799999999999999863 2246678777 4555555666666666665554 1221
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHH
Q 037510 622 -------VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIV 694 (806)
Q Consensus 622 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 694 (806)
......+...+...|++++|.++|+.+...++ +......+
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p---------------------------------~~~~~~~~ 141 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS---------------------------------EHLVAWMK 141 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC---------------------------------HHHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---------------------------------chHHHHHH
Confidence 23444567788899999999999998876542 22266667
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhcHHHHHHHHHh
Q 037510 695 IAGICKSGNVTDARRIFSALLLTGFSPD--NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN--IATYNSLVSGLCN 770 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~ 770 (806)
...+.+.|++++|+..|+...+.. .|. ..++..++.++...|++++|+..|++.......|. ......+..++.+
T Consensus 142 a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 142 AVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS 220 (282)
T ss_dssp HHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence 778999999999999998766521 121 23788999999999999999999999986332253 3466778889999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 037510 771 SGELDRAKRLFCKLRQKGLTPTVVTYNIL 799 (806)
Q Consensus 771 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 799 (806)
.|+.++|...|+++.. ..|+...+..|
T Consensus 221 lGr~deA~~~l~~a~a--~~P~~~~~~aL 247 (282)
T 4f3v_A 221 QGNESAAVALLEWLQT--THPEPKVAAAL 247 (282)
T ss_dssp HTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh--cCCcHHHHHHH
Confidence 9999999999999998 67775554444
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.68 E-value=1.6e-06 Score=85.84 Aligned_cols=171 Identities=4% Similarity=-0.085 Sum_probs=123.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-H----hHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCC--HHH
Q 037510 555 YNYLISVAFKSRELTSLVDLLAEMQTMGLYPN-I----VTYGALISGWCDAGMLNKAFKAYFDMIEKGF---SPN--VAI 624 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~ 624 (806)
+...+..+...|++++|.+.+.+..+...... . ..+..+...+...|++++|+..++++++... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34456667778888888888877776532211 1 1233455567788999999999999986321 122 458
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 625 CSKLVSTLCRLGKIDEANIFLQKMVDFD-FVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 625 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
++.++..|...|++++|...++++++.. ..|+.. .....+++.++.+|...|+
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~--------------------------~~~~~~~~nlg~~y~~~~~ 211 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE--------------------------EFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH--------------------------HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc--------------------------cchHHHHHhHHHHHHHHhh
Confidence 8899999999999999999999987420 011000 0012588899999999999
Q ss_pred hhhHHHHHHHHHHCC----CCCC-HHhHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 037510 704 VTDARRIFSALLLTG----FSPD-NFTYSTLIHGYAAVGDINEA-FNLRDEMLK 751 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g----~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 751 (806)
+++|+..+++.++.. ..+. ..+|..++.+|.+.|++++| ...+++++.
T Consensus 212 y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 999999999988631 1111 45889999999999999999 788988875
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=3.4e-07 Score=81.69 Aligned_cols=129 Identities=11% Similarity=0.068 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..++..+...|++++|...++++++... .+..++..++.++...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--------------------------------~~~~~~~~~a~~~~~~ 60 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP--------------------------------SNAIYYGNRSLAYLRT 60 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------------------------------CChHHHHHHHHHHHHc
Confidence 34566677788888999999999998887542 2567888899999999
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHH--HHHHHHHhcCCHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYN--SLVSGLCNSGELDRA 777 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~--~l~~~~~~~g~~~~A 777 (806)
|++++|...+++..+ ..|+. .+|..++.++...|++++|++.++++++. .| +...+. .++..+.+.|++++|
T Consensus 61 ~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A 136 (166)
T 1a17_A 61 ECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERA 136 (166)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 55654 58889999999999999999999999984 34 444443 334447788999999
Q ss_pred HHHHHHHHH
Q 037510 778 KRLFCKLRQ 786 (806)
Q Consensus 778 ~~~~~~m~~ 786 (806)
.+.+++...
T Consensus 137 ~~~~~~~~~ 145 (166)
T 1a17_A 137 IAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHcccchHH
Confidence 999887643
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.65 E-value=1.7e-07 Score=84.91 Aligned_cols=127 Identities=10% Similarity=0.099 Sum_probs=94.6
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhh
Q 037510 597 WCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSL 676 (806)
Q Consensus 597 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 676 (806)
+...|++++|...+++.++.. +.+...+..++.+|...|++++|...++++++..+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----------------------- 75 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG----------------------- 75 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-----------------------
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------------
Confidence 345678888888888887763 44677888888888888888888888888876542
Q ss_pred HHhhhcCCCCChHHHHHHHHH-HHhcCCh--hhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 677 DESARSLCVPNYVVYNIVIAG-ICKSGNV--TDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 677 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
.+...+..++.+ +...|++ ++|...|+++++ ..|+. .++..++..|...|++++|+..|+++++
T Consensus 76 ---------~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~- 143 (177)
T 2e2e_A 76 ---------ENAELYAALATVLYYQASQHMTAQTRAMIDKALA--LDSNEITALMLLASDAFMQANYAQAIELWQKVMD- 143 (177)
T ss_dssp ---------SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred ---------CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh-
Confidence 256677778888 7788888 899999998888 56764 4788888888999999999999999888
Q ss_pred CCCCChhc
Q 037510 753 NLVPNIAT 760 (806)
Q Consensus 753 ~~~p~~~~ 760 (806)
+.|+...
T Consensus 144 -~~p~~~~ 150 (177)
T 2e2e_A 144 -LNSPRIN 150 (177)
T ss_dssp -TCCTTSC
T ss_pred -hCCCCcc
Confidence 4454433
No 132
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.64 E-value=2.3e-07 Score=78.27 Aligned_cols=106 Identities=11% Similarity=0.111 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..++..+.+.|++++|+..|+++++.++ .+..+|+.++.+|...
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--------------------------------~~~~~~~nlg~~~~~~ 55 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP--------------------------------SNITFYNNKAAVYFEE 55 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------------------CCHHHHHhHHHHHHHh
Confidence 34567788889999999999999999987653 2677899999999999
Q ss_pred CChhhHHHHHHHHHHCCCCCCH--------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN--------FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNS 763 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 763 (806)
|++++|++.+++.++ +.|+. .+|..++.++...|++++|++.|++.++ ..||+.....
T Consensus 56 ~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 56 KKFAECVQFCEKAVE--VGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp TCHHHHHHHHHHHHH--HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred hhHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 999999999999987 44432 2678889999999999999999999988 4567654443
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.63 E-value=2.3e-07 Score=78.38 Aligned_cols=108 Identities=12% Similarity=0.085 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLV 765 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 765 (806)
...|..++..+.+.|++++|+..|++.++ ..|+. ..|..++.+|.+.|++++|+..++++++. .| +...+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 45788899999999999999999999999 66765 58999999999999999999999999994 56 677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC------CCHhhHHHHHH
Q 037510 766 SGLCNSGELDRAKRLFCKLRQKGLT------PTVVTYNILID 801 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~m~~~g~~------p~~~~~~~li~ 801 (806)
.++...|++++|...+++..+ +. |+.......+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~p~~~~~~~~l~ 119 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAART--KDAEVNNGSSAREIDQLYY 119 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHH--hCcccCCchhHHHHHHHHH
Confidence 999999999999999999887 45 76555444443
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.61 E-value=1.9e-07 Score=80.78 Aligned_cols=103 Identities=17% Similarity=0.082 Sum_probs=89.1
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSL 764 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 764 (806)
+...+..++..+.+.|++++|+..|+++++ ..|+. ..|..++.+|...|++++|+..|+++++. .| ++..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 92 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHH
Confidence 455677788899999999999999999999 67765 58999999999999999999999999994 45 67788999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 037510 765 VSGLCNSGELDRAKRLFCKLRQKGLTPTVVT 795 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 795 (806)
+.+|...|++++|.+.+++..+ +.|+...
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 121 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA--LAAAQPA 121 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HHHTCGG
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCcc
Confidence 9999999999999999999887 4454333
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.60 E-value=5.9e-07 Score=76.56 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.++..++.+|...|++++|+..++++.+ ..|+. .++..++.+|...|++++|++.|+++++
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQ--LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444444444444444444444444444 23322 2444444444444444444444444444
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.60 E-value=1.5e-07 Score=81.87 Aligned_cols=97 Identities=12% Similarity=-0.029 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh
Q 037510 621 NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK 700 (806)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 700 (806)
+...+..+...+...|++++|...|++++..++ .+...|..++.+|..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~lg~~~~~ 67 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH--------------------------------YDSRFFLGLGACRQA 67 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc--------------------------------ccHHHHHHHHHHHHH
Confidence 455666777888888888888888888877642 267788888888888
Q ss_pred cCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 701 SGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.|++++|+..|+++++ +.|+. .+|..++.+|...|++++|++.|+++++
T Consensus 68 ~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 68 MGQYDLAIHSYSYGAV--MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999988888 66765 4788888888899999999999988887
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=1e-06 Score=78.53 Aligned_cols=129 Identities=13% Similarity=0.030 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhh
Q 037510 588 VTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINV 667 (806)
Q Consensus 588 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~ 667 (806)
..+..+...+...|++++|...|++.++.. +.+...+..++.++...|++++|...+++.++..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-------------- 78 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-------------- 78 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------------
Confidence 356667777888899999999999888763 44678888888889999999999999999887642
Q ss_pred hHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhH--HHHHHHHHhcCCHHHHHH
Q 037510 668 DAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTY--STLIHGYAAVGDINEAFN 744 (806)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~--~~l~~~~~~~g~~~~A~~ 744 (806)
.+..++..++.++...|++++|...|+++.+ ..|+. ..+ ..++..+...|++++|++
T Consensus 79 ------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 79 ------------------KYIKGYYRRAASNMALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp ------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2566888899999999999999999999988 55654 344 334444778899999999
Q ss_pred HHHHHHH
Q 037510 745 LRDEMLK 751 (806)
Q Consensus 745 ~~~~~~~ 751 (806)
.+.+...
T Consensus 139 ~~~~~~~ 145 (166)
T 1a17_A 139 GDEHKRS 145 (166)
T ss_dssp HHHHHHH
T ss_pred cccchHH
Confidence 9988764
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=5.8e-07 Score=83.41 Aligned_cols=160 Identities=14% Similarity=0.018 Sum_probs=91.0
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHH
Q 037510 599 DAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDE 678 (806)
Q Consensus 599 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 678 (806)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++.+.......
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------- 60 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG---------------------- 60 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC----------------------
Confidence 45666666664433322 1122455666666666667777777777666654200000
Q ss_pred hhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCC-C-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 679 SARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT----GFSP-D-NFTYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 679 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
..+....++..++..|...|++++|...+++..+. +-.| . ..++..++..+...|++++|+..+++.++.
T Consensus 61 ----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 61 ----DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 00012345666777777777777777777776652 1012 1 125677777777777888887777777652
Q ss_pred CC-CCC----hhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 753 NL-VPN----IATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 753 ~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
.- .++ ..++..+..++...|++++|.+.+++..
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 137 AQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 10 011 2235667777777788888877777754
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.59 E-value=4e-07 Score=91.88 Aligned_cols=163 Identities=16% Similarity=0.049 Sum_probs=117.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhh
Q 037510 601 GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESA 680 (806)
Q Consensus 601 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (806)
+++++|+..++...+.. +.+...+..+...+.+.|++++|...|+++++........ ..+... .+.
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------~~~~~~---~~~--- 192 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------SNEEAQ---KAQ--- 192 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-------CSHHHH---HHH---
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-------ChHHHH---HHH---
Confidence 34445555544433321 1145667777888888888888888888888754321000 000000 000
Q ss_pred hcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-Ch
Q 037510 681 RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NI 758 (806)
Q Consensus 681 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~ 758 (806)
+-...+|..++.+|.+.|++++|+..++++++ +.|+. .+|..++.+|...|++++|+..|+++++ +.| +.
T Consensus 193 ----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~ 264 (336)
T 1p5q_A 193 ----ALRLASHLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNK 264 (336)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCH
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH
Confidence 00146889999999999999999999999999 67865 5899999999999999999999999999 456 67
Q ss_pred hcHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 037510 759 ATYNSLVSGLCNSGELDRA-KRLFCKLR 785 (806)
Q Consensus 759 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 785 (806)
..+..+..++.+.|+.++| ...+++|.
T Consensus 265 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999 45666664
No 140
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.57 E-value=2.2e-05 Score=77.40 Aligned_cols=176 Identities=8% Similarity=-0.077 Sum_probs=130.3
Q ss_pred HHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-C-Ch
Q 037510 132 YAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNG-EGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKE-K-SM 208 (806)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g-~~ 208 (806)
..+.+.-++|+++++.++..++. +..+|+.-...+...| .+++++.+++.++...++ +..+|+.-...+.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 34455667899999999987654 6778888888888888 599999999999986533 566777776666666 6 88
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---
Q 037510 209 EKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLN--------GAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHK--- 277 (806)
Q Consensus 209 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 277 (806)
++++++++++.+.. +.|..+|+.-.-++.+.|.++ ++.+.++++.+..+ .|..+|+.....+.+.++
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccccc
Confidence 89999999998765 446777776666666666665 88888888888765 478888888877777775
Q ss_pred ----HHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCC
Q 037510 278 ----MEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGK 313 (806)
Q Consensus 278 ----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 313 (806)
++++++.++++... .+-|...|+.+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 57778877777765 34466677666555555544
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.57 E-value=6.5e-06 Score=81.41 Aligned_cols=162 Identities=13% Similarity=0.042 Sum_probs=89.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCChH----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hhHHHHH
Q 037510 269 TKGYCKQHKMEEAENMLRRMKEEDDVIVDEY----AYGVLIDGYCKVGKVDEAIRVLNEMLKTGLE-MN----LLICNSL 339 (806)
Q Consensus 269 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 339 (806)
+..+...|++++|..++++..+.....|+.. .+..+...+...|++++|...++++.+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5556677777777777777665433333321 2233555555666777777777777663222 12 2256667
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhC-----CCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-cchHHH
Q 037510 340 INGYCKLGQVCEAKRVLRCMGDW-----NLRP-DSFSFNTLVDGYCRECDMTEAFRLCAEMLRQ----GIEPS-VVTYNT 408 (806)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~ 408 (806)
...|...|++++|...|++..+. +..+ ...+|..+...|.+.|++++|++.+++.++. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77777777777777777665521 1111 1225555666666666666666666655432 11111 234555
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHH
Q 037510 409 LLKGLCRVGD-VDEALHLWLMML 430 (806)
Q Consensus 409 ll~~~~~~~~-~~~a~~~~~~~~ 430 (806)
+...+.+.|+ .++|...+++.+
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555555663 456665555544
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.55 E-value=7.5e-07 Score=75.54 Aligned_cols=82 Identities=18% Similarity=0.138 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLV 765 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 765 (806)
..++..++.++...|++++|...+++..+ ..|+. .++..++..|...|++++|+..++++.+. .| +...+..+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~ 121 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAIC--IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--DPDNETYKSNLK 121 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHh--cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CccchHHHHHHH
Confidence 34455555555555555555555555555 33432 35555555555555666666655555552 23 344444555
Q ss_pred HHHHhcCC
Q 037510 766 SGLCNSGE 773 (806)
Q Consensus 766 ~~~~~~g~ 773 (806)
.++.+.|+
T Consensus 122 ~~~~~~~~ 129 (131)
T 2vyi_A 122 IAELKLRE 129 (131)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 55555444
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.54 E-value=1.3e-06 Score=73.32 Aligned_cols=94 Identities=19% Similarity=0.313 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGL 768 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 768 (806)
++..++..+...|++++|.+.|+++.+ ..|+ ..++..++..+...|++++|+..++++.+.. ..+..++..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 444444455555555555555555544 2232 2344445555555555555555555554421 11334444455555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 037510 769 CNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 769 ~~~g~~~~A~~~~~~m~~ 786 (806)
...|++++|..+++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555444
No 144
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=2.6e-05 Score=76.58 Aligned_cols=227 Identities=11% Similarity=0.100 Sum_probs=164.1
Q ss_pred HhcCChH-HHHHHHHHHHhcccChhhhhcCCCC-CHHHHHHHHHHHHhcCC----------HhHHHHHHHHHHHCCCCCC
Q 037510 519 CKVGNLE-EAFKIKNLMERREILPSMEKEAIVP-SIDMYNYLISVAFKSRE----------LTSLVDLLAEMQTMGLYPN 586 (806)
Q Consensus 519 ~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~g~~p~ 586 (806)
.+.|.++ +|+.+.+.+ ....| +..+|+.--..+...+. +++++.+++.+.... +-+
T Consensus 40 ~~~~e~s~eaL~~t~~~-----------L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKn 107 (331)
T 3dss_A 40 RQAGELDESVLELTSQI-----------LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKS 107 (331)
T ss_dssp HHTTCCSHHHHHHHHHH-----------HTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred HHcCCCCHHHHHHHHHH-----------HHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCC
Confidence 3455554 788888866 22333 34455543333332222 678889999888763 346
Q ss_pred HhHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCChhhhhhh
Q 037510 587 IVTYGALISGWCDAG--MLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGK-IDEANIFLQKMVDFDFVPDLKYMASS 663 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~~ 663 (806)
..+|+.-...+...| .+++++..++++++.. +-|...|+.-..++...|. ++++++.++++++.++.
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~--------- 177 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--------- 177 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC---------
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC---------
Confidence 778888777787777 4899999999999874 4578888888888888898 69999999999987644
Q ss_pred hhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc--------------CChhhHHHHHHHHHHCCCCCCHH-hHHH
Q 037510 664 AINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS--------------GNVTDARRIFSALLLTGFSPDNF-TYST 728 (806)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~g~~p~~~-~~~~ 728 (806)
|..+|+.....+.+. +.++++++.+++++. ..|+.. +|+-
T Consensus 178 -----------------------N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y 232 (331)
T 3dss_A 178 -----------------------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFY 232 (331)
T ss_dssp -----------------------CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHH
T ss_pred -----------------------CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 667787777666655 457899999999999 778764 7877
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCChh-cHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 729 LIHGYAAV-----------GDINEAFNLRDEMLKINLVPNIA-TYNSLV---SGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 729 l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~---~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
+-..+.+. +.++++++.++++++ +.||.. ++-.++ .+....|..+++..++.++++ +.|..
T Consensus 233 ~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r 308 (331)
T 3dss_A 233 HRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMR 308 (331)
T ss_dssp HHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcch
Confidence 76666665 468899999999999 677652 222222 223356888999999999998 78875
Q ss_pred hhH
Q 037510 794 VTY 796 (806)
Q Consensus 794 ~~~ 796 (806)
.-|
T Consensus 309 ~~~ 311 (331)
T 3dss_A 309 AAY 311 (331)
T ss_dssp HHH
T ss_pred hhH
Confidence 544
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.51 E-value=1.2e-06 Score=88.37 Aligned_cols=131 Identities=15% Similarity=0.039 Sum_probs=105.5
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN--------------VAICSKLVSTLCRLGKIDEANIFLQKMVDFD 652 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 652 (806)
...+..+...|.+.|++++|+..|+++++...... ...|..+..+|.+.|++++|+..++++++.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44566667777777888888888877776532211 5788889999999999999999999998865
Q ss_pred CCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHH
Q 037510 653 FVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIH 731 (806)
Q Consensus 653 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~ 731 (806)
+ .+..+|..++.+|...|++++|+..|+++++ +.|+. .++..+..
T Consensus 227 p--------------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 227 S--------------------------------NNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAV 272 (336)
T ss_dssp T--------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHH
T ss_pred C--------------------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 3 2677889999999999999999999999999 67865 48889999
Q ss_pred HHHhcCCHHHH-HHHHHHHHH
Q 037510 732 GYAAVGDINEA-FNLRDEMLK 751 (806)
Q Consensus 732 ~~~~~g~~~~A-~~~~~~~~~ 751 (806)
++...|++++| ...|++|..
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 557777764
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.51 E-value=4.8e-07 Score=80.58 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSL 764 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 764 (806)
+...+..++..+...|++++|+..|++.++ +.|+. ..|..++.+|...|++++|+..|+++++. .| +...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 566788899999999999999999999999 67755 58999999999999999999999999994 46 67889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 765 VSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
..+|...|++++|...+++..+ +.|+..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~--~~p~~~ 113 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIE--AEGNGG 113 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HHSSSC
T ss_pred HHHHHHccCHHHHHHHHHHHHH--hCCCch
Confidence 9999999999999999999987 455543
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.50 E-value=4.1e-07 Score=75.91 Aligned_cols=98 Identities=17% Similarity=0.045 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSG 767 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 767 (806)
.+..++..+.+.|++++|+..|+++++ ..|+. ..|..++.++...|++++|+..|+++++ +.| +...+..++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 456678889999999999999999999 67865 5899999999999999999999999999 456 67788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 768 LCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 768 ~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
|.+.|++++|...+++..+ ..|+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~--~~P~~ 118 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLL--SQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHcCCHHHHHHHHHHHHH--hCcCC
Confidence 9999999999999999987 56653
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.49 E-value=1.9e-06 Score=73.26 Aligned_cols=116 Identities=12% Similarity=0.049 Sum_probs=75.1
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAIN 666 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 666 (806)
...+..+...+...|++++|...|+++++.. +.+...+..+..++...|++++|...++++++...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------------- 81 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP------------- 81 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------------
Confidence 4455666666667777777777777766542 33566666677777777777777777777665432
Q ss_pred hhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcC
Q 037510 667 VDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVG 737 (806)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g 737 (806)
.+..++..++.++...|++++|.+.|++..+ ..|+. ..+..+..++...|
T Consensus 82 -------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 82 -------------------TFIKGYTRKAAALEAMKDYTKAMDVYQKALD--LDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGTHHHHHHHHHHHHHT
T ss_pred -------------------CchHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhc
Confidence 2455667777777777777777777777776 45554 35556666655544
No 149
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=2.3e-06 Score=74.48 Aligned_cols=110 Identities=12% Similarity=0.060 Sum_probs=94.7
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-Chhc
Q 037510 686 PNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD----NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIAT 760 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~ 760 (806)
.+...+..++..+...|++++|+..|++.++ ..|+ ..+|..++.+|...|++++|+..++++++. .| +...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHH
Confidence 4677888999999999999999999999999 6787 458999999999999999999999999984 45 6778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037510 761 YNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILID 801 (806)
Q Consensus 761 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 801 (806)
+..++.+|...|++++|..++++..+ +.|+.......+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 140 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHH
Confidence 88999999999999999999999988 5676544444443
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.49 E-value=1.6e-06 Score=71.87 Aligned_cols=107 Identities=18% Similarity=0.168 Sum_probs=91.0
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSL 764 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 764 (806)
....+..++..+...|++++|...|++..+ ..|+ ...+..++..+...|++++|+..++++.+. .| +...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 78 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 345788889999999999999999999998 5664 468899999999999999999999999984 45 67788999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 037510 765 VSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNIL 799 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 799 (806)
+.++...|++++|.+.+++..+ ..|+.......
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~ 111 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLK--HEANNPQLKEG 111 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH--cCCCCHHHHHH
Confidence 9999999999999999999988 56664443333
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.49 E-value=3e-06 Score=71.02 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..++..++..+...|++++|...++++.+ ..|+ ..++..++..|...|++++|...++++.+
T Consensus 43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33445555555555555555555555555 2232 23455555555555555555555555555
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.47 E-value=1.7e-06 Score=84.82 Aligned_cols=194 Identities=10% Similarity=-0.080 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037510 551 SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVS 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 630 (806)
+...+..+...+.+.|++++|...+++..+.. +.+...|..+..+|.+.|++++|...++++++.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45667788899999999999999999998863 3367888899999999999999999999999863 446888999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 037510 631 TLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRI 710 (806)
Q Consensus 631 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 710 (806)
++...|++++|...++++.+.++................. .............+.+..+...+... ..|++++|++.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~ 157 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA-KKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEE 157 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH-HHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHH
Confidence 9999999999999999988754221100000000000000 00111112222334455555555333 36888999999
Q ss_pred HHHHHHCCCCCCHH-hHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 037510 711 FSALLLTGFSPDNF-TYSTLIHGYAAV-GDINEAFNLRDEMLK 751 (806)
Q Consensus 711 ~~~~~~~g~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 751 (806)
+++..+ ..|+.. ....+...+.+. +.+++|.++|.++.+
T Consensus 158 ~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 158 CQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888887 677765 344444445554 678888988888765
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=1.7e-06 Score=72.90 Aligned_cols=95 Identities=13% Similarity=-0.017 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC
Q 037510 623 AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG 702 (806)
Q Consensus 623 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 702 (806)
..+..++..+.+.|++++|...|++.++.++ .+..+|..++.+|.+.|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~~a~~~~~~~ 52 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--------------------------------EDARGYSNRAAALAKLM 52 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------------------------------CChHHHHHHHHHHHHhc
Confidence 4455566667777777777777777766542 25567777777777777
Q ss_pred ChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 703 NVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 703 ~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
++++|+..+++.++ +.|+. .+|..++.+|...|++++|++.|+++++
T Consensus 53 ~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 53 SFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 77777777777777 55654 3677777777777777777777777776
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.46 E-value=2.6e-06 Score=72.09 Aligned_cols=118 Identities=14% Similarity=0.078 Sum_probs=83.7
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAIN 666 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 666 (806)
...+..+...+...|++++|...++++++.. +.+...+..++.++...|++++|...++++.+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------------- 77 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP------------- 77 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-------------
Confidence 3455666666777777788887777777653 33566777777777788888888888887776532
Q ss_pred hhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCH
Q 037510 667 VDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDI 739 (806)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~ 739 (806)
.+..++..++.++...|++++|...|++..+ ..|+. ..+..++.++...|++
T Consensus 78 -------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 78 -------------------AYSKAYGRMGLALSSLNKHVEAVAYYKKALE--LDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTTC
T ss_pred -------------------cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHhcC
Confidence 2456777777888888888888888888877 45643 4677777777776654
No 155
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.46 E-value=6.7e-05 Score=74.01 Aligned_cols=139 Identities=12% Similarity=0.025 Sum_probs=75.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-C-CHHH
Q 037510 204 KEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLG-DLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQ-H-KMEE 280 (806)
Q Consensus 204 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~ 280 (806)
+.+..++|+++++++.... +-+..+|+.--..+...| ++++++++++.+....+ .+..+|+.-...+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHH
Confidence 3444456777777776654 234555666666666666 47777777777766544 3556666655555554 5 6666
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 037510 281 AENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVD--------EAIRVLNEMLKTGLEMNLLICNSLINGYCKLG 347 (806)
Q Consensus 281 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 347 (806)
++++++++.+. .+-+..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+
T Consensus 144 EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 144 EIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 66666666654 2334455554444444444333 444445544444322 4444444444333333
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.44 E-value=1.6e-06 Score=74.84 Aligned_cols=96 Identities=16% Similarity=-0.009 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..+...+.+.|++++|...|++++..++ .+...|..++.+|...
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~lg~~~~~~ 65 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH--------------------------------YDARYFLGLGACRQSL 65 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC--------------------------------ccHHHHHHHHHHHHHH
Confidence 34455566667777777888777777776542 2566777777778888
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|++++|+..|+++++ +.|+. ..|..++.+|...|++++|++.|+++++
T Consensus 66 g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 66 GLYEQALQSYSYGAL--MDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888877 55655 3677777888888888888888888776
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.44 E-value=1.3e-06 Score=74.96 Aligned_cols=98 Identities=10% Similarity=0.006 Sum_probs=88.4
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHH
Q 037510 685 VPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYN 762 (806)
Q Consensus 685 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 762 (806)
+.+...+..++..+...|++++|+..|++.++ ..|+. ..|..++.+|...|++++|+..++++++. .| ++..+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 81 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHF 81 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHH
Confidence 35678899999999999999999999999999 56765 58999999999999999999999999994 45 677889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 763 SLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 763 ~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
.++.+|...|++++|...+++..+
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999876
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.43 E-value=1.7e-06 Score=79.88 Aligned_cols=168 Identities=15% Similarity=0.027 Sum_probs=105.6
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-ChhhhhhhhhhhhHHHHHhhhH
Q 037510 599 DAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVP-DLKYMASSAINVDAQKIAMSLD 677 (806)
Q Consensus 599 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~ 677 (806)
..|.++++.+.|+...+. .......+..+...+...|++++|...++++++..... +.... . . ......
T Consensus 16 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~---~--~--~~~~~~-- 85 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ---I--L--LDKKKN-- 85 (198)
T ss_dssp ------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH---H--H--HHHHHH--
T ss_pred hhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh---h--H--HHHHHH--
Confidence 344555554444322221 01134456667778888899999999998888754221 00000 0 0 000000
Q ss_pred HhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037510 678 ESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP 756 (806)
Q Consensus 678 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 756 (806)
....++..++.+|...|++++|+..++++++ ..|+. .++..++.+|...|++++|++.|+++++ +.|
T Consensus 86 --------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p 153 (198)
T 2fbn_A 86 --------IEISCNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNP 153 (198)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HST
T ss_pred --------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCC
Confidence 0135788899999999999999999999999 56765 5899999999999999999999999998 456
Q ss_pred -ChhcHHHHHHHHHhcCCHHHHH-HHHHHHHHCC
Q 037510 757 -NIATYNSLVSGLCNSGELDRAK-RLFCKLRQKG 788 (806)
Q Consensus 757 -~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~g 788 (806)
+...+..+..++...|+.+++. ..+..|...|
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 154 NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6678888888888888888887 5666665543
No 159
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.43 E-value=6.5e-06 Score=78.33 Aligned_cols=188 Identities=9% Similarity=-0.048 Sum_probs=123.6
Q ss_pred HcCChhhHHHHHHHhhhcCCCcChhhHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCH--------------
Q 037510 134 QKGMLKNALHVFDNMGKYGCIPSLRSCNCL-------LSNLVKNGEGYVALLVYEQMMRVGIVPDV-------------- 192 (806)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~A~~~~~~m~~~~~~~~~-------------- 192 (806)
..++.+.|.+.|.......+. ....|+.+ ..++...++..+++..+..-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 579999999999999987653 67788888 6777777777777777766554 22321
Q ss_pred --------hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--h
Q 037510 193 --------FTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRT--A 262 (806)
Q Consensus 193 --------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~ 262 (806)
.........+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 122334566777788888888887776543 333255555667777788888888877554421 010 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 037510 263 VTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVD--EYAYGVLIDGYCKVGKVDEAIRVLNEMLKTG 328 (806)
Q Consensus 263 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 328 (806)
..+..+..++...|++++|++.|++.... ...|. .........++.+.|+.++|..+|+++....
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 35666677777777777777777777643 22132 2345555666677777777777777777653
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.43 E-value=9.5e-07 Score=72.44 Aligned_cols=97 Identities=13% Similarity=0.147 Sum_probs=85.9
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ChhcHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP---NIATYN 762 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~ 762 (806)
+...+..++..+...|++++|...|+++.+ ..|+ ..+|..++.++...|++++|++.++++++. .| +...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHH
Confidence 556778889999999999999999999998 5565 458899999999999999999999999984 44 467888
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHC
Q 037510 763 SLVSGLCNS-GELDRAKRLFCKLRQK 787 (806)
Q Consensus 763 ~l~~~~~~~-g~~~~A~~~~~~m~~~ 787 (806)
.++.++.+. |++++|.+.+++..+.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 999999999 9999999999999873
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.43 E-value=2.5e-05 Score=76.75 Aligned_cols=193 Identities=10% Similarity=0.054 Sum_probs=149.9
Q ss_pred HhcCCH-hHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037510 563 FKSREL-TSLVDLLAEMQTMGLYPN-IVTYGALISGWCDAGM----------LNKAFKAYFDMIEKGFSPNVAICSKLVS 630 (806)
Q Consensus 563 ~~~~~~-~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 630 (806)
.+.|.+ ++|+++.+.+... .|+ ...|+.--..+...|. +++++.+++.++... +-+..+|+.-..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 355655 4899999999986 444 4455554443333332 678999999999864 457888888888
Q ss_pred HHHhcCC--HHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC-hhhH
Q 037510 631 TLCRLGK--IDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN-VTDA 707 (806)
Q Consensus 631 ~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 707 (806)
++.+.|+ +++++.+++++++.++. |..+|+....++...|. .+++
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dpr--------------------------------Ny~AW~~R~~vl~~l~~~~~ee 164 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADER--------------------------------NFHCWDYRRFVAAQAAVAPAEE 164 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCC--------------------------------CHHHHHHHHHHHHHhCcCHHHH
Confidence 8888884 89999999999987644 78899999999999998 5999
Q ss_pred HHHHHHHHHCCCCCCH-HhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhc
Q 037510 708 RRIFSALLLTGFSPDN-FTYSTLIHGYAAV--------------GDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNS 771 (806)
Q Consensus 708 ~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 771 (806)
++.++++++ ..|+. .+|+.....+... +.++++++.+.+++. +.| |...|+.+-..+.+.
T Consensus 165 l~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 165 LAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc
Confidence 999999999 66765 5888888777765 458899999999998 456 677777666666655
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHhhHH
Q 037510 772 -----------GELDRAKRLFCKLRQKGLTPTVVTYN 797 (806)
Q Consensus 772 -----------g~~~~A~~~~~~m~~~g~~p~~~~~~ 797 (806)
+.++++++.++++.+ +.||. .|.
T Consensus 241 ~~~~~~~~~~~~~l~~el~~~~elle--~~pd~-~w~ 274 (331)
T 3dss_A 241 SGRCELSVEKSTVLQSELESCKELQE--LEPEN-KWC 274 (331)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC-HHH
T ss_pred cCccccchHHHHHHHHHHHHHHHHHh--hCccc-chH
Confidence 568999999999998 78885 444
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.42 E-value=1.4e-06 Score=85.43 Aligned_cols=97 Identities=13% Similarity=-0.015 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 037510 157 LRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDG 236 (806)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 236 (806)
...+..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344444555555555555555555544422 1133444444444444444444444444444432 1233444444444
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 037510 237 YVSLGDLNGAKRVLEWTCE 255 (806)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~ 255 (806)
|...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444433
No 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.42 E-value=2.9e-06 Score=78.55 Aligned_cols=157 Identities=12% Similarity=-0.030 Sum_probs=94.1
Q ss_pred HHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHhcCC
Q 037510 133 AQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRV----GIV-PDVFTCSIVVNAYCKEKS 207 (806)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~-~~~~~~~~l~~~~~~~g~ 207 (806)
...|++++|.+.++.+.. .+.....+++.+...+...|++++|...|++.... +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356888888885554433 22234567788888888888888888888877652 111 123456666777777788
Q ss_pred hhHHHHHHHHHHHc----CCC--cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcC
Q 037510 208 MEKALDFVKEMENL----GFE--LNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGIS-RT----AVTYTTLTKGYCKQH 276 (806)
Q Consensus 208 ~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g 276 (806)
+++|...+++..+. +-. .....+..+...+...|++++|...+++....... .+ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88777777776543 101 12345666677777777777777777766532100 11 123455666666667
Q ss_pred CHHHHHHHHHHHHh
Q 037510 277 KMEEAENMLRRMKE 290 (806)
Q Consensus 277 ~~~~a~~~~~~~~~ 290 (806)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777666665543
No 164
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.40 E-value=9.1e-07 Score=75.60 Aligned_cols=111 Identities=19% Similarity=0.111 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--------H-----HhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD--------N-----FTYSTLIHGYAAVGDINEAFNLRDEMLKI--- 752 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 752 (806)
..+...+..+.+.|++++|+..|++.++ +.|+ . ..|..++.++.+.|++++|+..++++++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3667788899999999999999999999 6676 1 28999999999999999999999999983
Q ss_pred --CCCCC-hhcH----HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhHHHHHH
Q 037510 753 --NLVPN-IATY----NSLVSGLCNSGELDRAKRLFCKLRQ-----KGLTPTVVTYNILID 801 (806)
Q Consensus 753 --~~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~li~ 801 (806)
.+.|+ ...| ...+.+|...|++++|+..|++.++ .|+.+........+.
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 11674 5577 8999999999999999999999865 467676665555543
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.39 E-value=2.6e-06 Score=75.79 Aligned_cols=96 Identities=11% Similarity=-0.001 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..+...+.+.|++++|+..|+++++..+ .+...|..++.+|...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~l~~~~~~~ 58 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP--------------------------------ANPIYLSNRAAAYSAS 58 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------------------cCHHHHHHHHHHHHHc
Confidence 34455555556666666666666666655432 1445566666666666
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|++++|+..|++.++ +.|+. .+|..++.+|...|++++|++.|+++++
T Consensus 59 g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 59 GQHEKAAEDAELATV--VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666666666666 44543 3566666666666666666666666665
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.39 E-value=2.2e-06 Score=76.02 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHC-------CC---------CCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLT-------GF---------SPDN-FTYSTLIHGYAAVGDINEAFNLRDEML 750 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~---------~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (806)
...+...+..+.+.|++++|+..|++.++. +- .|.. ..|..++.+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 447788899999999999999999999983 00 3444 488999999999999999999999999
Q ss_pred HcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHH
Q 037510 751 KINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVV-TYNILI 800 (806)
Q Consensus 751 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li 800 (806)
+. .| ++..|..++.+|...|++++|...+++..+ +.|+.. .....+
T Consensus 91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l 138 (162)
T 3rkv_A 91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREM 138 (162)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHH
T ss_pred hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHH
Confidence 94 56 677899999999999999999999999998 688765 444433
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.39 E-value=2.2e-06 Score=72.63 Aligned_cols=110 Identities=11% Similarity=0.071 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----hhc
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINL--VPN----IAT 760 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~ 760 (806)
...+..++..+...|++++|...|+++.+ ..|+ ..++..++..|...|++++|+..++++++... .++ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 34788899999999999999999999998 4565 45889999999999999999999999998421 112 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037510 761 YNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILID 801 (806)
Q Consensus 761 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 801 (806)
+..++.++.+.|++++|.+.++++.+ ..|+...+..+-.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~ 120 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 88999999999999999999999988 5566655554433
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=2.7e-06 Score=72.91 Aligned_cols=98 Identities=13% Similarity=-0.053 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHH
Q 037510 620 PNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGIC 699 (806)
Q Consensus 620 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 699 (806)
.+...+..+...+...|++++|...+++++...+ .+..+|..++.++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--------------------------------~~~~~~~~l~~~~~ 54 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--------------------------------LVAVYYTNRALCYL 54 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--------------------------------CcHHHHHHHHHHHH
Confidence 3566677777777777777777777777776542 25567777788888
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 700 KSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 700 ~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..|++++|...+++.++ ..|+. .+|..++.+|...|++++|+..|+++++
T Consensus 55 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 55 KMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888888888877 55654 4777788888888888888888888776
No 169
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=6.6e-06 Score=67.99 Aligned_cols=95 Identities=22% Similarity=0.186 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC
Q 037510 623 AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG 702 (806)
Q Consensus 623 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 702 (806)
..+..++..+...|++++|...++++....+ .+...+..++.++...|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------------~~~~~~~~~a~~~~~~~ 52 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP--------------------------------HNHVLYSNRSAAYAKKG 52 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--------------------------------CcHHHHHHHHHHHHhhc
Confidence 3445555556666666666666666655431 14445666666666666
Q ss_pred ChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 703 NVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 703 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
++++|...+++..+ ..|+ ...+..++.++...|++++|.+.++++.+
T Consensus 53 ~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 53 DYQKAYEDGCKTVD--LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666 3444 33566666666666666666666666665
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.36 E-value=3.9e-06 Score=70.96 Aligned_cols=100 Identities=17% Similarity=0.148 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhcHH
Q 037510 691 YNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF----TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN----IATYN 762 (806)
Q Consensus 691 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~ 762 (806)
+..++..+...|++++|...|+++.+ ..|+.. ++..++.++...|++++|+..|+++++. .|+ +..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHH
Confidence 44567888999999999999999998 456654 7888999999999999999999999984 353 56688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 037510 763 SLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTY 796 (806)
Q Consensus 763 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 796 (806)
.++.++.+.|++++|...++++.+ ..|+....
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~ 112 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVAT--QYPGSDAA 112 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTSHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCChHH
Confidence 899999999999999999999987 45664433
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.35 E-value=1.9e-06 Score=71.74 Aligned_cols=97 Identities=10% Similarity=0.037 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCCh
Q 037510 625 CSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNV 704 (806)
Q Consensus 625 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 704 (806)
+..+...+.+.|++++|...++++++..+ .+...|..++.++...|++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P--------------------------------~~~~a~~~lg~~~~~~g~~ 67 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP--------------------------------EREEAWRSLGLTQAENEKD 67 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------------------------TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC--------------------------------CCHHHHHHHHHHHHHcCCH
Confidence 45567778899999999999999988653 2778899999999999999
Q ss_pred hhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 705 TDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN 757 (806)
Q Consensus 705 ~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 757 (806)
++|+..|++.++ +.|+. .++..++.+|...|++++|+..++++++ +.|+
T Consensus 68 ~~A~~~~~~al~--l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~ 117 (121)
T 1hxi_A 68 GLAIIALNHARM--LDPKDIAVHAALAVSHTNEHNANAALASLRAWLL--SQPQ 117 (121)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcC
Confidence 999999999999 77875 4899999999999999999999999987 4453
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=2.6e-06 Score=72.13 Aligned_cols=111 Identities=12% Similarity=0.086 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..++..+...|++++|...++++.+..+ .+..++..++..|...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------------~~~~~~~~la~~~~~~ 51 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP--------------------------------TNMTYITNQAAVYFEK 51 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------------------------------ccHHHHHHHHHHHHHh
Confidence 34566777888888999999999988887542 2566788888999999
Q ss_pred CChhhHHHHHHHHHHCCCCCC--------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPD--------NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGL 768 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 768 (806)
|++++|...++++.+. .|+ ..++..++.+|...|++++|.+.|+++.+. .|+......+..+.
T Consensus 52 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 52 GDYNKCRELCEKAIEV--GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp TCHHHHHHHHHHHHHH--HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhh--ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 9999999999998873 332 457888999999999999999999999984 46665555554443
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.30 E-value=1.2e-06 Score=72.60 Aligned_cols=103 Identities=19% Similarity=0.196 Sum_probs=77.6
Q ss_pred hcCChhhHHHHHHHHHHCCC-CCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHH
Q 037510 700 KSGNVTDARRIFSALLLTGF-SPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDR 776 (806)
Q Consensus 700 ~~g~~~~A~~~~~~~~~~g~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 776 (806)
..|++++|+..|++.++.+. .|+. .+|..++.+|...|++++|+..|+++++. .| ++..+..++.+|.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 46899999999999999321 3554 48999999999999999999999999984 45 67788999999999999999
Q ss_pred HHHHHHHHHHC-CCCCCHhhHHHHHHhhh
Q 037510 777 AKRLFCKLRQK-GLTPTVVTYNILIDGYC 804 (806)
Q Consensus 777 A~~~~~~m~~~-g~~p~~~~~~~li~~~~ 804 (806)
|...+++..+. .-.|+...|...+..|.
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 99999998763 22334444555554443
No 174
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.28 E-value=7.7e-06 Score=75.35 Aligned_cols=129 Identities=10% Similarity=0.017 Sum_probs=87.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCC-C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFS-P--------------NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDF 653 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 653 (806)
.+..+...+...|++++|+..|++.++.... | ....+..+..++...|++++|...++++++..+
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3445555566666666666666666653211 1 026777888888899999999999998887642
Q ss_pred CCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHH
Q 037510 654 VPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHG 732 (806)
Q Consensus 654 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~ 732 (806)
.+..++..++.+|...|++++|...|++.++ +.|+. .++..+..+
T Consensus 120 --------------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 120 --------------------------------NNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELC 165 (198)
T ss_dssp --------------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHH
T ss_pred --------------------------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHH
Confidence 2667888888999999999999999999988 66765 477778888
Q ss_pred HHhcCCHHHHH-HHHHHHHH
Q 037510 733 YAAVGDINEAF-NLRDEMLK 751 (806)
Q Consensus 733 ~~~~g~~~~A~-~~~~~~~~ 751 (806)
+...++.+++. ..+..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 166 VNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 77777777666 55555554
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.27 E-value=5e-06 Score=68.01 Aligned_cols=95 Identities=9% Similarity=-0.001 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC
Q 037510 623 AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG 702 (806)
Q Consensus 623 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 702 (806)
..+..++..+...|++++|...++++++... .+..++..++.++...|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------------~~~~~~~~~a~~~~~~~ 54 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--------------------------------EESKYWLMKGKALYNLE 54 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--------------------------------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--------------------------------CCHHHHHHHHHHHHHcc
Confidence 3444555566666666666666666655432 14455666666666777
Q ss_pred ChhhHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 037510 703 NVTDARRIFSALLLTGFSPD---NFTYSTLIHGYAAV-GDINEAFNLRDEMLK 751 (806)
Q Consensus 703 ~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 751 (806)
++++|...|++..+ ..|+ ..++..++.+|... |++++|++.++++++
T Consensus 55 ~~~~A~~~~~~a~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 55 RYEEAVDCYNYVIN--VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp CHHHHHHHHHHHHH--TSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHH--hCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 77777777777766 4454 34666677777777 777777777777666
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.25 E-value=4.7e-06 Score=73.73 Aligned_cols=138 Identities=17% Similarity=0.093 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC
Q 037510 623 AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG 702 (806)
Q Consensus 623 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 702 (806)
.++..+...+...|++++|...+++..+...... + ......++..++..+...|
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~-------------------~~~~~~~~~~l~~~~~~~g 63 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-------D-------------------KAAERIAYSNLGNAYIFLG 63 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-------C-------------------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC-------C-------------------chHHHHHHHHHHHHHHHcC
Confidence 3455566666677777777777776654310000 0 0001236677788888888
Q ss_pred ChhhHHHHHHHHHHCC-CCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhcHHHHHHHHHhcC
Q 037510 703 NVTDARRIFSALLLTG-FSPD----NFTYSTLIHGYAAVGDINEAFNLRDEMLKI----NLVP-NIATYNSLVSGLCNSG 772 (806)
Q Consensus 703 ~~~~A~~~~~~~~~~g-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g 772 (806)
++++|...+++..+.. ..++ ..++..++..+...|++++|++.++++++. +..+ ....+..+...+...|
T Consensus 64 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 143 (164)
T 3ro3_A 64 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 143 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc
Confidence 8888888888876531 0111 236778888888888888888888888762 1111 2346677888888889
Q ss_pred CHHHHHHHHHHHHH
Q 037510 773 ELDRAKRLFCKLRQ 786 (806)
Q Consensus 773 ~~~~A~~~~~~m~~ 786 (806)
++++|.+++++..+
T Consensus 144 ~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 144 NHDQAMHFAEKHLE 157 (164)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999988888764
No 177
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=1.6e-05 Score=68.92 Aligned_cols=100 Identities=14% Similarity=0.048 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh
Q 037510 621 NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK 700 (806)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 700 (806)
+...+..+...+...|++++|...++++++....+. -...++..++.+|..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------------------~~~~~~~~~a~~~~~ 77 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-----------------------------DQAVLHRNRAACHLK 77 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-----------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch-----------------------------HHHHHHHHHHHHHHH
Confidence 445555566666666666666666666665431100 003456666667777
Q ss_pred cCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 701 SGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.|++++|+..+++..+ ..|+. ..|..++.+|...|++++|++.|+++++
T Consensus 78 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 78 LEDYDKAETEASKAIE--KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp TTCHHHHHHHHHHHHH--HTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHh--hCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777766 44543 4666677777777777777777777776
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=1.5e-06 Score=92.23 Aligned_cols=119 Identities=11% Similarity=0.074 Sum_probs=96.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhH
Q 037510 628 LVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDA 707 (806)
Q Consensus 628 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 707 (806)
+...+.+.|++++|.+.++++++..+ .+..+|..++.+|.+.|++++|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p--------------------------------~~~~~~~~lg~~~~~~g~~~~A 59 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP--------------------------------SNAIYYGNRSLAYLRTECYGYA 59 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC--------------------------------ccHHHHHHHHHHHHHhcCHHHH
Confidence 34456678999999999999887642 2677999999999999999999
Q ss_pred HHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHH--HHhcCCHHHHHHHHH
Q 037510 708 RRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSG--LCNSGELDRAKRLFC 782 (806)
Q Consensus 708 ~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 782 (806)
++.++++++ +.|+. .+|..++.+|...|++++|++.|+++++. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 60 ~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 60 LGDATRAIE--LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999 67875 58999999999999999999999999984 45 45566666666 888999999999988
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=6.9e-05 Score=78.93 Aligned_cols=202 Identities=8% Similarity=-0.042 Sum_probs=143.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCC----------------HhHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCC
Q 037510 559 ISVAFKSRELTSLVDLLAEMQTMGLYPN----------------IVTYGALISGWCDAGMLNKAFKAYFDMIEKG-FSPN 621 (806)
Q Consensus 559 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 621 (806)
...+.+.|++++|++.|..+.+...... ...+..++..|...|++++|.+.+.++.+.- -.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556788999999999999987532211 1246778899999999999999999887521 1122
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHH
Q 037510 622 V----AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAG 697 (806)
Q Consensus 622 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 697 (806)
. .+.+.+...+...|++++|..++++........ ........++..++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~la~~ 144 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--------------------------KRVFLKHSLSIKLATL 144 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--------------------------SCCSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--------------------------CccHHHHHHHHHHHHH
Confidence 2 223334444556789999999998876421000 0001124577889999
Q ss_pred HHhcCChhhHHHHHHHHHHC--C--CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC-C-C--hhcHHHHHH
Q 037510 698 ICKSGNVTDARRIFSALLLT--G--FSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKI--NLV-P-N--IATYNSLVS 766 (806)
Q Consensus 698 ~~~~g~~~~A~~~~~~~~~~--g--~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-p-~--~~~~~~l~~ 766 (806)
|...|++++|..+++++... + -.|.. .++..++..|...|++++|..+++++... .+. | . ...+..++.
T Consensus 145 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 224 (434)
T 4b4t_Q 145 HYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGI 224 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Confidence 99999999999999998764 1 12333 37899999999999999999999998762 111 1 1 245667777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 037510 767 GLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 767 ~~~~~g~~~~A~~~~~~m~~ 786 (806)
.+...|++++|...+.+..+
T Consensus 225 ~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 225 LHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 88899999999998887653
No 180
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.18 E-value=4.2e-05 Score=82.57 Aligned_cols=175 Identities=7% Similarity=-0.013 Sum_probs=140.8
Q ss_pred hcC-CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037510 564 KSR-ELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGM----------LNKAFKAYFDMIEKGFSPNVAICSKLVSTL 632 (806)
Q Consensus 564 ~~~-~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 632 (806)
+.| ..++|++.++++.+.. +-+...|+.-..++...|+ ++++++.++++++.. +-+..+|..-..++
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344 4568899999998863 2245567766666666666 899999999999874 44788898888899
Q ss_pred HhcC--CHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC-ChhhHHH
Q 037510 633 CRLG--KIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG-NVTDARR 709 (806)
Q Consensus 633 ~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~ 709 (806)
.+.| ++++++++++++++.++. |..+|+....++.+.| .++++++
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~--------------------------------N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER--------------------------------NFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHhhccc--------------------------------cccHHHHHHHHHHHcCCChHHHHH
Confidence 9999 779999999999987644 7889999999999999 8999999
Q ss_pred HHHHHHHCCCCCCH-HhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCC
Q 037510 710 IFSALLLTGFSPDN-FTYSTLIHGYAAV--------------GDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGE 773 (806)
Q Consensus 710 ~~~~~~~~g~~p~~-~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 773 (806)
.++++++ ..|+. .+|+....++.+. +.++++++.+++++. +.| |...|+.+...+.+.|+
T Consensus 166 ~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 166 FTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHH--HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCC
Confidence 9999998 67765 5888888887763 567999999999998 456 77888888888888887
Q ss_pred HHH
Q 037510 774 LDR 776 (806)
Q Consensus 774 ~~~ 776 (806)
.++
T Consensus 242 ~~~ 244 (567)
T 1dce_A 242 HDV 244 (567)
T ss_dssp CSC
T ss_pred ccc
Confidence 555
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.18 E-value=6.6e-06 Score=87.24 Aligned_cols=119 Identities=14% Similarity=0.052 Sum_probs=81.9
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHH
Q 037510 594 ISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIA 673 (806)
Q Consensus 594 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 673 (806)
...+.+.|++++|++.|+++++.. +.+...+..+..+|.+.|++++|...++++++.++.
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------------------- 72 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------------------- 72 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-------------------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------------------
Confidence 334556778888888888777752 335777777788888888888888888887776422
Q ss_pred hhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHH--HHhcCCHHHHHHHHH
Q 037510 674 MSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHG--YAAVGDINEAFNLRD 747 (806)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~--~~~~g~~~~A~~~~~ 747 (806)
+..+|..++.+|...|++++|++.|+++++ ..|+. .++..+..+ +.+.|++++|++.++
T Consensus 73 -------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 73 -------------YIKGYYRRAASNMALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp -------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred -------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 566777778888888888888888888877 45654 355555555 777788888888877
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.18 E-value=6.9e-06 Score=70.17 Aligned_cols=107 Identities=10% Similarity=0.050 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC
Q 037510 623 AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG 702 (806)
Q Consensus 623 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 702 (806)
..+...+..+.+.|++++|+..|++.++..+..... ..+.. .+.+..+|+.+..++.+.|
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~---------------~a~~~-----~~~~a~a~~n~g~al~~Lg 71 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE---------------EAFDH-----AGFDAFCHAGLAEALAGLR 71 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT---------------SCCCH-----HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch---------------hhhhh-----ccchHHHHHHHHHHHHHCC
Confidence 345566777889999999999999998765431000 00000 0013348999999999999
Q ss_pred ChhhHHHHHHHHHHCCC-------CCCHH-hH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 703 NVTDARRIFSALLLTGF-------SPDNF-TY----STLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 703 ~~~~A~~~~~~~~~~g~-------~p~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
++++|+..+++.++ + .|+.. +| ...+.++...|++++|+..|+++++
T Consensus 72 r~~eAl~~~~kAL~--l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 72 SFDEALHSADKALH--YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CHHHHHHHHHHHHH--HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999 7 89875 88 9999999999999999999999998
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.18 E-value=1.1e-05 Score=85.22 Aligned_cols=143 Identities=15% Similarity=0.058 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..+...+.+.|++++|...|+++++....... ...+... ... .-...+|..+..+|.+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~---~~~-------~~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG-------LSEKESK---ASE-------SFLLAAFLNLAMCYLKL 330 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS-------CCHHHHH---HHH-------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc-------CChHHHH---HHH-------HHHHHHHHHHHHHHHHh
Confidence 456667777788888888888888887764321100 0000000 000 00245888999999999
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 779 (806)
|++++|+..++++++ +.|+. .+|..++.+|...|++++|+..|+++++ +.| +...+..+..++.+.|+.++|.+
T Consensus 331 g~~~~A~~~~~~al~--~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 331 REYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 67765 4899999999999999999999999998 566 66788889999999999988775
Q ss_pred -HHHHHH
Q 037510 780 -LFCKLR 785 (806)
Q Consensus 780 -~~~~m~ 785 (806)
.+.+|.
T Consensus 407 ~~~~~~f 413 (457)
T 1kt0_A 407 RIYANMF 413 (457)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 455554
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.15 E-value=9.2e-06 Score=82.79 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSL 764 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 764 (806)
+..+|..+..+|.+.|++++|+..++++++ +.|+. .+|..++.+|...|++++|++.|+++++ +.| +...+..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l 347 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAEL 347 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 456889999999999999999999999999 67865 4899999999999999999999999998 456 66677788
Q ss_pred HHHHHhcCCHHHHHH
Q 037510 765 VSGLCNSGELDRAKR 779 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~ 779 (806)
..++.+.|+.+++.+
T Consensus 348 ~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888877765
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.14 E-value=1.5e-05 Score=70.63 Aligned_cols=68 Identities=18% Similarity=0.100 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
+..+|..++.+|.+.|++++|+..++++++ +.|+.. +|..++.+|...|++++|+..|+++++ +.|+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~ 130 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLK--REETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCC
Confidence 456889999999999999999999999999 678764 899999999999999999999999999 45643
No 186
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.13 E-value=2e-06 Score=73.34 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=75.7
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCC-ChhcHHHHHH
Q 037510 699 CKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDI----------NEAFNLRDEMLKINLVP-NIATYNSLVS 766 (806)
Q Consensus 699 ~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 766 (806)
.+.+.+++|++.+++.++ +.|+. ..|..++.++...|++ ++|+..|+++++ +.| +...|+.++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 345667888888888888 66765 4777788888877654 488888888888 566 5567888888
Q ss_pred HHHhcC-----------CHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhh
Q 037510 767 GLCNSG-----------ELDRAKRLFCKLRQKGLTPTVVTYNILIDGYC 804 (806)
Q Consensus 767 ~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 804 (806)
+|...| ++++|.+.|++.++ +.|+...|...+...-
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 888764 78888888888888 7888888877766543
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=1.2e-05 Score=71.06 Aligned_cols=137 Identities=14% Similarity=0.044 Sum_probs=96.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhh
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFS-PN----VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASS 663 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 663 (806)
++..+...+...|++++|...+++.++.... ++ ..++..+...+...|++++|...+++..+.....+
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------- 83 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK------- 83 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-------
Confidence 4556666677777777777777777653100 11 24667778888889999999999888775311000
Q ss_pred hhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcCC
Q 037510 664 AINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT----GFSPD-NFTYSTLIHGYAAVGD 738 (806)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~ 738 (806)
.......++..++..+...|++++|.+.+++..+. +..+. ..++..++..|...|+
T Consensus 84 -------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 144 (164)
T 3ro3_A 84 -------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 144 (164)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred -------------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC
Confidence 00012346778889999999999999999988763 11112 1378889999999999
Q ss_pred HHHHHHHHHHHHH
Q 037510 739 INEAFNLRDEMLK 751 (806)
Q Consensus 739 ~~~A~~~~~~~~~ 751 (806)
+++|++.++++++
T Consensus 145 ~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 145 HDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999886
No 188
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=4.9e-05 Score=63.98 Aligned_cols=100 Identities=15% Similarity=0.043 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChh
Q 037510 626 SKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVT 705 (806)
Q Consensus 626 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 705 (806)
..+...+...|++++|...++++++..+.. .....++..++.++...|+++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----------------------------~~~~~~~~~lg~~~~~~~~~~ 56 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNG-----------------------------VYTPNALYWLGESYYATRNFQ 56 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSS-----------------------------TTHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-----------------------------cccHHHHHHHHHHHHHhccHH
Confidence 345677888999999999999988764321 001147778899999999999
Q ss_pred hHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 706 DARRIFSALLLTGFSPDN----FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 706 ~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
+|+..|+++++ ..|+. .++..++.++...|++++|+..|+++++. .|+.
T Consensus 57 ~A~~~~~~~~~--~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~ 109 (129)
T 2xev_A 57 LAEAQFRDLVS--RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ--YPGS 109 (129)
T ss_dssp HHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTS
T ss_pred HHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCC
Confidence 99999999998 55664 47889999999999999999999999984 4543
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.09 E-value=3.4e-05 Score=81.47 Aligned_cols=130 Identities=15% Similarity=0.034 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 037510 588 VTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN--------------VAICSKLVSTLCRLGKIDEANIFLQKMVDFDF 653 (806)
Q Consensus 588 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 653 (806)
..|..+...|.+.|++++|+..|+++++...... ...|..+..+|.+.|++++|+..++++++.++
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3455566666667777777777777666421111 57888899999999999999999999988653
Q ss_pred CCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHH
Q 037510 654 VPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHG 732 (806)
Q Consensus 654 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~ 732 (806)
.+..+|..++.+|...|++++|+..|+++++ +.|+.. ++..+..+
T Consensus 349 --------------------------------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 349 --------------------------------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMC 394 (457)
T ss_dssp --------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHH
T ss_pred --------------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 2677888999999999999999999999999 778765 88889999
Q ss_pred HHhcCCHHHHHH-HHHHHHH
Q 037510 733 YAAVGDINEAFN-LRDEMLK 751 (806)
Q Consensus 733 ~~~~g~~~~A~~-~~~~~~~ 751 (806)
+.+.|++++|.. .+++|..
T Consensus 395 ~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 999998887764 5555554
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.09 E-value=5.3e-06 Score=83.64 Aligned_cols=97 Identities=13% Similarity=0.022 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSG 767 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 767 (806)
+|..+..+|.+.|++++|+..+++.++ +.|+. .+|..++.+|...|++++|+..|+++++ +.| +...+..|...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 788899999999999999999999999 67865 5899999999999999999999999987 456 45566666655
Q ss_pred -HHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 768 -LCNSGELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 768 -~~~~g~~~~A~~~~~~m~~~g~~p~ 792 (806)
....+..+++..+|.+|.. ..|+
T Consensus 308 ~~~~~~~~~~a~~~~~~~l~--~~p~ 331 (338)
T 2if4_A 308 AEQEKALYQKQKEMYKGIFK--GKDE 331 (338)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhC--CCCC
Confidence 3455778889999999886 4454
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=0.00011 Score=77.26 Aligned_cols=126 Identities=7% Similarity=-0.099 Sum_probs=63.4
Q ss_pred HHHHHHcCChhhHHHHHHHhhhcCCCcCh----------------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC
Q 037510 129 LKIYAQKGMLKNALHVFDNMGKYGCIPSL----------------RSCNCLLSNLVKNGEGYVALLVYEQMMRVGI-VPD 191 (806)
Q Consensus 129 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~~~ 191 (806)
.+.+.+.|++++|++.|..+.+.....+. .++..++..|.+.|++++|.+.+.++.+.-. .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567788888888888888765332111 1355666667777777777776666544210 111
Q ss_pred Hh----HHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037510 192 VF----TCSIVVNAYCKEKSMEKALDFVKEMENL----GFEL-NVVTYNSLIDGYVSLGDLNGAKRVLEWTC 254 (806)
Q Consensus 192 ~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 254 (806)
.. +.+.+...+...|+++.|..++...... +..+ -..++..|...|...|++++|..++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 11 1112222223345555555555554321 1111 12344445555555555555555554443
No 192
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.05 E-value=7e-06 Score=69.97 Aligned_cols=113 Identities=11% Similarity=0.065 Sum_probs=87.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCCh--------
Q 037510 633 CRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNV-------- 704 (806)
Q Consensus 633 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------- 704 (806)
.+.+.+++|.+.+++.++..+ .+...|+.++.++...+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P--------------------------------~~aea~~n~G~~l~~l~~~~~g~~al~ 60 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP--------------------------------LDADNLTRWGGVLLELSQFHSISDAKQ 60 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC--------------------------------CCHHHHHHHHHHHHHhcccchhhhhHh
Confidence 456778899999999887753 3788999999999988775
Q ss_pred --hhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 037510 705 --TDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVG-----------DINEAFNLRDEMLKINLVPNIATYNSLVSGLCN 770 (806)
Q Consensus 705 --~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 770 (806)
++|+..|++.++ +.|+.. +|..++.+|...| ++++|++.|+++++ +.|+...|...+..
T Consensus 61 ~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~--- 133 (158)
T 1zu2_A 61 MIQEAITKFEEALL--IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM--- 133 (158)
T ss_dssp HHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH---
Confidence 599999999999 889874 9999999999875 89999999999999 67876655443322
Q ss_pred cCCHHHHHHHHHHHHHC
Q 037510 771 SGELDRAKRLFCKLRQK 787 (806)
Q Consensus 771 ~g~~~~A~~~~~~m~~~ 787 (806)
.++|.++.-.+...
T Consensus 134 ---~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 134 ---TAKAPQLHAEAYKQ 147 (158)
T ss_dssp ---HHTHHHHHHHHHHS
T ss_pred ---HHhCHhccCccccc
Confidence 24444544444443
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.03 E-value=1.4e-05 Score=80.53 Aligned_cols=94 Identities=15% Similarity=0.064 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
.|..+..+|.+.|++++|+..++++++.+. .+..+|..++.+|...|+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------------------------------~~~~a~~~lg~a~~~~g~ 279 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE--------------------------------KNPKALFRRGKAKAELGQ 279 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------------------CCHHHHHHHHHHHHHcCC
Confidence 778899999999999999999999988653 267789999999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHH-hHHHHHHHH-HhcCCHHHHHHHHHHHHH
Q 037510 704 VTDARRIFSALLLTGFSPDNF-TYSTLIHGY-AAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~-~~~g~~~~A~~~~~~~~~ 751 (806)
+++|+..|+++++ +.|+.. ++..|.... ...+..+++...|++|..
T Consensus 280 ~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 280 MDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999998 778764 666666653 345678888999999987
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.97 E-value=0.00012 Score=79.03 Aligned_cols=153 Identities=10% Similarity=0.038 Sum_probs=127.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHH
Q 037510 601 GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGK----------IDEANIFLQKMVDFDFVPDLKYMASSAINVDAQ 670 (806)
Q Consensus 601 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 670 (806)
...++|++.++++++.+ +-+...|+.-..++...|+ +++++++++++++.+++
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK---------------- 105 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---------------- 105 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT----------------
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC----------------
Confidence 34568899999999874 3356778777777777777 89999999999987644
Q ss_pred HHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC--ChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcC-CHHHHHHHH
Q 037510 671 KIAMSLDESARSLCVPNYVVYNIVIAGICKSG--NVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVG-DINEAFNLR 746 (806)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g-~~~~A~~~~ 746 (806)
+..+|+....++.+.| +++++++.++++++ ..|.. .+|+.-..++.+.| .++++++.+
T Consensus 106 ----------------~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~ 167 (567)
T 1dce_A 106 ----------------SYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (567)
T ss_dssp ----------------CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHHHHcccccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHH
Confidence 7789999999999999 66999999999999 66765 59999999999999 899999999
Q ss_pred HHHHHcCCCC-ChhcHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCC
Q 037510 747 DEMLKINLVP-NIATYNSLVSGLCNS--------------GELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 747 ~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~ 792 (806)
+++++. .| |...|+.....+.+. +++++|.+++++.+. +.|+
T Consensus 168 ~~~I~~--~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~--~~P~ 224 (567)
T 1dce_A 168 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPN 224 (567)
T ss_dssp HTTTTT--TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH--HCSS
T ss_pred HHHHHH--CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh--hCCC
Confidence 999984 45 777888877777663 567999999999887 5665
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.97 E-value=4.5e-05 Score=77.68 Aligned_cols=121 Identities=8% Similarity=-0.000 Sum_probs=92.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 037510 590 YGALISGWCDAGMLNKAFKAYFDMIEK---------------GFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFV 654 (806)
Q Consensus 590 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 654 (806)
+..+...+.+.|++++|++.|+++++. .-+.+...|..+..+|.+.|++++|+..++++++.++
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p- 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP- 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-
Confidence 445555566666666666666666641 0122467888899999999999999999999998653
Q ss_pred CChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHH
Q 037510 655 PDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGY 733 (806)
Q Consensus 655 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~ 733 (806)
.+..+|..++.+|...|++++|+..|+++++ +.|+. ..+..+..++
T Consensus 305 -------------------------------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 305 -------------------------------SNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLKVK 351 (370)
T ss_dssp -------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred -------------------------------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 2677888999999999999999999999999 67765 4777788877
Q ss_pred HhcCCHHHHHH
Q 037510 734 AAVGDINEAFN 744 (806)
Q Consensus 734 ~~~g~~~~A~~ 744 (806)
...++.+++.+
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=3.8e-06 Score=68.71 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------h
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-------I 758 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~ 758 (806)
+...+..++..+...|++++|+..|++.++ ..|+. .+|..++.+|...|++++|++.++++++ +.|+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHH
Confidence 456788899999999999999999999999 66754 5899999999999999999999999998 5564 4
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 759 ATYNSLVSGLCNSGELDRAKRLFCKL 784 (806)
Q Consensus 759 ~~~~~l~~~~~~~g~~~~A~~~~~~m 784 (806)
..+..+..++...|+.++|...++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 55667777777777777776655543
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.95 E-value=0.00015 Score=61.71 Aligned_cols=113 Identities=12% Similarity=-0.020 Sum_probs=95.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 037510 636 GKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALL 715 (806)
Q Consensus 636 g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 715 (806)
+++++|..+|++..+.+.. + .. |...|...+..++|.+.|++..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--------------------------------~--a~--lg~~y~~g~~~~~A~~~~~~Aa 52 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--------------------------------F--GC--LSLVSNSQINKQKLFQYLSKAC 52 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--------------------------------T--HH--HHHHTCTTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH--------------------------------h--hh--HHHHHHcCCCHHHHHHHHHHHH
Confidence 4678899999998887622 2 33 7788888888999999999999
Q ss_pred HCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 037510 716 LTGFSPDNFTYSTLIHGYAA----VGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCN----SGELDRAKRLFCKLRQK 787 (806)
Q Consensus 716 ~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~ 787 (806)
+.| +..++..|...|.. .+++++|+++|+++.+.| ++..+..|...|.. .++.++|.+++++..+.
T Consensus 53 ~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 53 ELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred cCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 953 56788899999988 899999999999999865 67788889999998 89999999999999987
Q ss_pred CCC
Q 037510 788 GLT 790 (806)
Q Consensus 788 g~~ 790 (806)
|..
T Consensus 127 g~~ 129 (138)
T 1klx_A 127 GSE 129 (138)
T ss_dssp TCH
T ss_pred CCH
Confidence 643
No 198
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.93 E-value=2.1e-05 Score=64.99 Aligned_cols=86 Identities=14% Similarity=0.076 Sum_probs=42.4
Q ss_pred cCChhHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 037510 205 EKSMEKALDFVKEMENLG--FELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAE 282 (806)
Q Consensus 205 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 282 (806)
.|++++|+..|++..+.+ -+.+..++..+..+|...|++++|...|++..+..+ .+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555432 122334455555555555555555555555555433 23445555555555555555555
Q ss_pred HHHHHHHhc
Q 037510 283 NMLRRMKEE 291 (806)
Q Consensus 283 ~~~~~~~~~ 291 (806)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555443
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.90 E-value=0.0001 Score=77.48 Aligned_cols=129 Identities=9% Similarity=-0.006 Sum_probs=96.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhCC---CCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhH
Q 037510 631 TLCRLGKIDEANIFLQKMVDFD---FVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDA 707 (806)
Q Consensus 631 ~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 707 (806)
.+..+|++++|..++++.++.. +-|++ +....+++.|+.+|..+|++++|
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~H---------------------------p~~a~~~~nLa~~y~~~g~~~eA 370 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTN---------------------------LYVLRLLSIASEVLSYLQAYEEA 370 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTS---------------------------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCC---------------------------HHHHHHHHHHHHHHHHhcCHHHH
Confidence 3456788888888887776421 11111 01235789999999999999999
Q ss_pred HHHHHHHHHC-----C-CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----hhcHHHHHHHHHhcCC
Q 037510 708 RRIFSALLLT-----G-FSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKI---NLVPN----IATYNSLVSGLCNSGE 773 (806)
Q Consensus 708 ~~~~~~~~~~-----g-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~ 773 (806)
+.++++.++. | -.|+. .+++.|+..|..+|++++|+.+++++++. -+-|| ..+...|..++...|+
T Consensus 371 ~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 371 SHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999998753 2 23443 38999999999999999999999999861 12233 2355677788889999
Q ss_pred HHHHHHHHHHHHH
Q 037510 774 LDRAKRLFCKLRQ 786 (806)
Q Consensus 774 ~~~A~~~~~~m~~ 786 (806)
+++|...+.++.+
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.88 E-value=0.00032 Score=59.63 Aligned_cols=111 Identities=14% Similarity=-0.001 Sum_probs=78.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhh
Q 037510 601 GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESA 680 (806)
Q Consensus 601 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (806)
+++++|++.|++..+.| .++.. +...|...+.+++|..+|++..+.+
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---------------------------- 55 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---------------------------- 55 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT----------------------------
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC----------------------------
Confidence 35677777777777765 33333 5566666667777777777777664
Q ss_pred hcCCCCChHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 037510 681 RSLCVPNYVVYNIVIAGICK----SGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAA----VGDINEAFNLRDEMLKI 752 (806)
Q Consensus 681 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 752 (806)
++..+..|...|.. .+++++|.+.|++..+.| +..++..|...|.. .+++++|+++|+++.+.
T Consensus 56 ------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 56 ------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp ------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 45567777777776 677888888888887743 45567777777777 77888888888888776
Q ss_pred C
Q 037510 753 N 753 (806)
Q Consensus 753 ~ 753 (806)
|
T Consensus 127 g 127 (138)
T 1klx_A 127 G 127 (138)
T ss_dssp T
T ss_pred C
Confidence 5
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.77 E-value=9.9e-05 Score=60.56 Aligned_cols=77 Identities=19% Similarity=0.163 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 706 DARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCK 783 (806)
Q Consensus 706 ~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 783 (806)
+|+..|++.++ ..|+. ..+..++..|...|++++|+..|+++++. .| +...+..++.+|...|++++|...+++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666666666 44543 36666666666667777777777666663 33 445566666666666777777766666
Q ss_pred HHH
Q 037510 784 LRQ 786 (806)
Q Consensus 784 m~~ 786 (806)
..+
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.74 E-value=0.0001 Score=57.20 Aligned_cols=82 Identities=21% Similarity=0.299 Sum_probs=63.1
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSL 764 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 764 (806)
+...+..++..+...|++++|+..|++.++ ..|+. .++..++.+|...|++++|+..++++++. .| +...+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 345777788888889999999999998888 55654 57888888888999999999999988883 45 55666667
Q ss_pred HHHHHhcC
Q 037510 765 VSGLCNSG 772 (806)
Q Consensus 765 ~~~~~~~g 772 (806)
..++.+.|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 66665543
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.73 E-value=8.2e-05 Score=61.06 Aligned_cols=63 Identities=17% Similarity=0.102 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+...+..++..|...|++++|+..|++.++ ..|+. .+|..++.+|...|++++|+..|+++++
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677899999999999999999999999999 66765 5899999999999999999999999987
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=2.9e-05 Score=63.27 Aligned_cols=91 Identities=18% Similarity=0.103 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..+...+...|++++|...++++++..+ .+..++..++.+|...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~lg~~~~~~ 51 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP--------------------------------QNPVGYSNKAMALIKL 51 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------------------------------CCHHHHHHHHHHHHHh
Confidence 44555666666777777777777777665432 2455667777777777
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-------FTYSTLIHGYAAVGDINEAFNLR 746 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~ 746 (806)
|++++|+..+++.++ +.|+. .++..++.++...|++++|++.+
T Consensus 52 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 52 GEYTQAIQMCQQGLR--YTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp TCHHHHHHHHHHHHT--SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred cCHHHHHHHHHHHHH--hCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 777777777777776 55653 24555555555555555554433
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.70 E-value=0.00015 Score=76.03 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=95.1
Q ss_pred HHHccCChHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCChhhhhhhhh
Q 037510 596 GWCDAGMLNKAFKAYFDMIEK---GFSP----NVAICSKLVSTLCRLGKIDEANIFLQKMVDFD---FVPDLKYMASSAI 665 (806)
Q Consensus 596 ~~~~~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~~~~ 665 (806)
.+...|++++|..++++.++. -+-| -..+++.|+.+|..+|++++|..+++++++.. +-|+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~--------- 388 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN--------- 388 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT---------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC---------
Confidence 345678888888888877752 1112 24577888888999999999999998876420 1111
Q ss_pred hhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC---CCCCCHH----hHHHHHHHHHhcCC
Q 037510 666 NVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT---GFSPDNF----TYSTLIHGYAAVGD 738 (806)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~----~~~~l~~~~~~~g~ 738 (806)
.+....+++.|+..|..+|++++|+.+++++++. -+.||.. +...+..++...|+
T Consensus 389 ------------------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 389 ------------------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 0112446899999999999999999999998753 2335542 66788888899999
Q ss_pred HHHHHHHHHHHHH
Q 037510 739 INEAFNLRDEMLK 751 (806)
Q Consensus 739 ~~~A~~~~~~~~~ 751 (806)
+++|..+|.++.+
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999987
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.59 E-value=0.00014 Score=57.73 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 686 PNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.++.++..++.+|...|++++|+..|+++++ ..|+. .+|..++.+|...|++++|++.|+++++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3677888899999999999999999999998 66765 4888999999999999999999999887
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.49 E-value=0.00059 Score=52.75 Aligned_cols=81 Identities=20% Similarity=0.212 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..+...+...|++++|...+++.++..+ .+..++..++.++...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------------------------------~~~~~~~~l~~~~~~~ 56 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------------------------------NNAEAWYNLGNAYYKQ 56 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--------------------------------CCHHHHHHHHHHHHHH
Confidence 44556666667777777777777777765432 1455667777777777
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhc
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAV 736 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~ 736 (806)
|++++|...|++..+ ..|+. .++..++.++.+.
T Consensus 57 ~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 57 GDYDEAIEYYQKALE--LDPNNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhc
Confidence 777777777777777 45544 3566666655543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.42 E-value=0.00045 Score=54.77 Aligned_cols=81 Identities=20% Similarity=0.189 Sum_probs=62.9
Q ss_pred CCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhH
Q 037510 720 SPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQK-GLTPTVVTY 796 (806)
Q Consensus 720 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~ 796 (806)
.|+. .++..++.+|...|++++|+..|+++++. .| ++..|..++.+|...|++++|.+.+++..+. .-.++....
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 3554 58999999999999999999999999994 45 5778999999999999999999999998752 112444444
Q ss_pred HHHHHh
Q 037510 797 NILIDG 802 (806)
Q Consensus 797 ~~li~~ 802 (806)
..+-..
T Consensus 81 ~~l~~~ 86 (100)
T 3ma5_A 81 SELQDA 86 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.41 E-value=0.0018 Score=63.70 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=61.8
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHH
Q 037510 685 VPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYN 762 (806)
Q Consensus 685 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 762 (806)
+.++.+|..+...+...|++++|...++++++ +.|+..+|..++..+.-.|++++|++.|+++.. +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~--Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGID--LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 45777888887777778999999999999999 568877888889999999999999999999988 567666654
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.41 E-value=0.0011 Score=65.16 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=63.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 037510 722 DNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNI 798 (806)
Q Consensus 722 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 798 (806)
+..+|..+...+...|++++|+..+++++..+ |+...|..+...+.-.|++++|.+.+++... +.|...+|..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 44588888888888899999999999999954 8887888889999999999999999999988 7888877653
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.29 E-value=0.0011 Score=68.46 Aligned_cols=87 Identities=10% Similarity=0.016 Sum_probs=70.8
Q ss_pred hcCChhhHHHHHHHHHHC---CCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCC-CCC-hhcHHHHH
Q 037510 700 KSGNVTDARRIFSALLLT---GFSPDN----FTYSTLIHGYAAVGDINEAFNLRDEMLK-----INL-VPN-IATYNSLV 765 (806)
Q Consensus 700 ~~g~~~~A~~~~~~~~~~---g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~l~ 765 (806)
..|++++|+.++++.++. -+.|+. .+++.|+.+|...|+|++|+.+++++++ .|- .|+ ..+|+.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 568999999999998763 233443 3899999999999999999999999986 231 222 35789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 037510 766 SGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~m~~ 786 (806)
..|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998653
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.16 E-value=0.0016 Score=67.17 Aligned_cols=64 Identities=6% Similarity=-0.037 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHC-----C-CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLT-----G-FSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..+++.|+.+|..+|++++|+.+++++++. | -.|+. .+++.|+..|..+|++++|+.+++++++
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 357899999999999999999999998753 2 23444 3899999999999999999999999986
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.14 E-value=0.0023 Score=66.09 Aligned_cols=91 Identities=10% Similarity=0.048 Sum_probs=74.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHC---CCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cC-CCC-Chhc
Q 037510 695 IAGICKSGNVTDARRIFSALLLT---GFSPDNF----TYSTLIHGYAAVGDINEAFNLRDEMLK-----IN-LVP-NIAT 760 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p-~~~~ 760 (806)
+..+..+|++++|+.++++.++. -+.|+.. +++.|+.+|...|+|++|+.+++++++ .| -.| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 55677889999999999999864 2345442 899999999999999999999999886 22 122 2357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 761 YNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 761 ~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
++.|+..|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8999999999999999999999865
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.12 E-value=0.0034 Score=48.48 Aligned_cols=65 Identities=11% Similarity=0.015 Sum_probs=52.8
Q ss_pred CChHHHHHHHHHHHhcCC---hhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 686 PNYVVYNIVIAGICKSGN---VTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
.|+..+..+..++...++ .++|..+|++.++ ..|+.+ ++..++..+.+.|++++|+..|+++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467778888888765544 6889999999988 778775 7778888889999999999999998884
No 215
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.06 E-value=3.7e-07 Score=90.48 Aligned_cols=118 Identities=16% Similarity=0.163 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 037510 121 SPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVN 200 (806)
Q Consensus 121 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 200 (806)
.|+++..|.+++.+.+++.+|++-|- +. .|+..|..++....+.|.+++-+..+....+.. .++..=+.++-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 46777788888888888888886653 22 367778888888888898888888887665543 34444467888
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037510 201 AYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWT 253 (806)
Q Consensus 201 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 253 (806)
+|++.+++.+-.+++. .||..-...+.+-|...|.++.|.-+|..+
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 8888888766544433 356555667777788888888877777543
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.04 E-value=0.003 Score=53.12 Aligned_cols=83 Identities=18% Similarity=0.102 Sum_probs=40.3
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--ChhcHHHHHHHHHhcCCHHHHHHHH
Q 037510 707 ARRIFSALLLTGFSPDNFTYSTLIHGYAAVG---DINEAFNLRDEMLKINLVP--NIATYNSLVSGLCNSGELDRAKRLF 781 (806)
Q Consensus 707 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 781 (806)
+.+.|.+..+.|. ++..+...+++++++.+ ++++++.++++..+.. .| +...+..|..++.+.|++++|++++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444444332 34444445555555555 4445555555555532 13 2334444555555555555555555
Q ss_pred HHHHHCCCCCCH
Q 037510 782 CKLRQKGLTPTV 793 (806)
Q Consensus 782 ~~m~~~g~~p~~ 793 (806)
+.+.+ +.|+.
T Consensus 95 ~~lL~--ieP~n 104 (152)
T 1pc2_A 95 RGLLQ--TEPQN 104 (152)
T ss_dssp HHHHH--HCTTC
T ss_pred HHHHh--cCCCC
Confidence 55555 45544
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.99 E-value=0.0051 Score=63.51 Aligned_cols=96 Identities=9% Similarity=-0.042 Sum_probs=74.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCC---CCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChh
Q 037510 629 VSTLCRLGKIDEANIFLQKMVDFD---FVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVT 705 (806)
Q Consensus 629 ~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 705 (806)
+..+..+|++++|..++++.++.. +.|++. ....+++.|+.+|...|+++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~---------------------------~~~~~~~~L~~~y~~~g~~~ 346 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINI---------------------------YQLKVLDCAMDACINLGLLE 346 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSH---------------------------HHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccch---------------------------HHHHHHHHHHHHHHhhccHH
Confidence 444667889999999999988642 222111 12347899999999999999
Q ss_pred hHHHHHHHHHHC-----C-CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 706 DARRIFSALLLT-----G-FSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 706 ~A~~~~~~~~~~-----g-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+|+.+++++++. | ..|+. .+++.|+..|..+|++++|+.+++++++
T Consensus 347 eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 347 EALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999988753 2 23443 3899999999999999999999999986
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.95 E-value=0.00063 Score=53.75 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=62.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCH-H-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hcHHHHHHHHHh
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDN-F-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI-ATYNSLVSGLCN 770 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 770 (806)
.+..+...|++++|+..|+++++ ..|+. . .|..++.+|...|++++|++.|+++++. .|+. ..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH-------
Confidence 56678899999999999999998 56765 5 8889999999999999999999999984 4533 33311
Q ss_pred cCCHHHHHHHHHHHHH
Q 037510 771 SGELDRAKRLFCKLRQ 786 (806)
Q Consensus 771 ~g~~~~A~~~~~~m~~ 786 (806)
+.+.+|...+++...
T Consensus 75 -~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMY 89 (99)
T ss_dssp -HHHHHHHHHHCCTTH
T ss_pred -HHHHHHHHHHHHHhc
Confidence 556677777666543
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.93 E-value=0.0042 Score=47.94 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=60.6
Q ss_pred CCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 037510 721 PDNFTYSTLIHGYAAVGD---INEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTY 796 (806)
Q Consensus 721 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 796 (806)
+|...+..++.++...++ .++|..+++++++ +.| ++.....++..+.+.|++++|..+++++.+ ..|+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~--~~p~~~~~ 79 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD--SNDPNLDR 79 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--CCCTTCCH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCccH
Confidence 345577888888865554 7999999999999 567 677888899999999999999999999998 45653333
Q ss_pred HHHHHh
Q 037510 797 NILIDG 802 (806)
Q Consensus 797 ~~li~~ 802 (806)
..+...
T Consensus 80 ~~i~~~ 85 (93)
T 3bee_A 80 VTIIES 85 (93)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.80 E-value=0.0012 Score=52.08 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=64.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChH-HHHHHHHHHHhcCChhh
Q 037510 628 LVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYV-VYNIVIAGICKSGNVTD 706 (806)
Q Consensus 628 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 706 (806)
.+..+.+.|++++|...++++++..+ .+.. .+..++.+|...|++++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~~lg~~~~~~~~~~~ 53 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP--------------------------------VGKDEAYYLMGNAYRKLGDWQK 53 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS--------------------------------STHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--------------------------------CcHHHHHHHHHHHHHHcCCHHH
Confidence 45667889999999999999987653 2567 88999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 707 ARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 707 A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|++.|++.++ ..|+.. ++.. +.+.+++..|++...
T Consensus 54 A~~~~~~al~--~~p~~~~~~~~--------~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 54 ALNNYQSAIE--LNPDSPALQAR--------KMVMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHHH--HCTTSTHHHHH--------HHHHHHHHHHCCTTH
T ss_pred HHHHHHHHHh--cCCCcHHHHHH--------HHHHHHHHHHHHHhc
Confidence 9999999999 678764 3311 456677777766554
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.75 E-value=2.4e-06 Score=84.85 Aligned_cols=119 Identities=11% Similarity=0.025 Sum_probs=60.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 037510 402 SVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIK 481 (806)
Q Consensus 402 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 481 (806)
++.||.-+-.+|...+.+.-|...--.++-. ......++..|-..|.+++-+.+++..+... ....-+|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 5566777777777776666554433333222 1112234555666677777666666665321 234455565555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037510 482 GLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNL 533 (806)
Q Consensus 482 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 533 (806)
.|++- ++++..+.++..-.+ .+ .--++++|.+..-|.++.-++..
T Consensus 272 LYsKY-~PeKlmEHlklf~sr---iN---ipKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSR---VN---IPKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSS---SC---CTTTHHHHTTTTCHHHHHHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHh---cc---HHHHHHHHHHHhhHHHHHHHHhc
Confidence 55553 344444444332221 01 11245666666666666555543
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.48 E-value=0.017 Score=54.24 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=75.0
Q ss_pred hhhHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCC--ChhcHHHHHHHHHhc-C
Q 037510 704 VTDARRIFSALLLTGFSPDN---FTYSTLIHGYAAV-----GDINEAFNLRDEMLKINLVP--NIATYNSLVSGLCNS-G 772 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g 772 (806)
..+|...+++.++ +.|+. .+|..|+..|.+. |+.++|.+.|+++++ +.| +..++..+...|++. |
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 5678888999999 78983 4899999999995 999999999999999 566 477888888888884 9
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHhhHHH
Q 037510 773 ELDRAKRLFCKLRQKGLT--PTVVTYNI 798 (806)
Q Consensus 773 ~~~~A~~~~~~m~~~g~~--p~~~~~~~ 798 (806)
+.++|.+++++....... |+....+.
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 999999999999986555 65554443
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.25 E-value=0.15 Score=58.39 Aligned_cols=46 Identities=22% Similarity=0.170 Sum_probs=26.0
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHH
Q 037510 563 FKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMI 614 (806)
Q Consensus 563 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 614 (806)
...|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 4455555555553221 245566666666666666666666666543
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.20 E-value=0.022 Score=45.12 Aligned_cols=70 Identities=13% Similarity=0.003 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC-----CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTG-----FSP-DNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
+..-+..|+..+...|++..|...|+++.+.- ..+ ....+..|+.+|.+.|++++|+.+++++++ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 34455677888888888888888888877641 112 234778888888888888888888888887 55643
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.12 E-value=0.12 Score=59.13 Aligned_cols=128 Identities=13% Similarity=0.124 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 037510 372 NTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNK 451 (806)
Q Consensus 372 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 451 (806)
..++..+.+.|..++|+++.++-. .-.......|+++.|.++.+. ..+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTD------ESAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHc
Confidence 555556666666666665542111 112334456677777666432 13456667777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037510 452 GDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIK 531 (806)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 531 (806)
|+++.|.+.|..+.. |..+...+...|+.+...++.+.....| + ++....+|.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~---~---~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG---K---FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC---c---hHHHHHHHHHcCCHHHHHHHH
Confidence 777777777665532 2334444444555555555544444433 1 222333445555665555554
Q ss_pred H
Q 037510 532 N 532 (806)
Q Consensus 532 ~ 532 (806)
.
T Consensus 760 ~ 760 (814)
T 3mkq_A 760 I 760 (814)
T ss_dssp H
T ss_pred H
Confidence 3
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.85 E-value=0.074 Score=44.69 Aligned_cols=70 Identities=14% Similarity=0.098 Sum_probs=58.7
Q ss_pred CChHHHHHHHHHHHhcC---ChhhHHHHHHHHHHCCCCC-C-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 686 PNYVVYNIVIAGICKSG---NVTDARRIFSALLLTGFSP-D-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
++..+...+..++++.+ +.++++.+|++..+.+ .| + ...+..|+-+|.+.|++++|.++++.+++ +.|+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQN 104 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 57778888999999988 5679999999999953 36 2 34677889999999999999999999999 67854
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.82 E-value=0.046 Score=43.18 Aligned_cols=69 Identities=19% Similarity=0.139 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 037510 726 YSTLIHGYAAVGDINEAFNLRDEMLKIN------LVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTY 796 (806)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 796 (806)
+..|+..+.+.|++..|+..|+.+++.- -.+...++..|+.++.+.|++++|..+++++.+ +.|+....
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~~ 82 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHH
Confidence 4578999999999999999999998731 123567889999999999999999999999988 77875443
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.67 E-value=0.058 Score=50.74 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh-----cCChhhHHHHHH
Q 037510 638 IDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK-----SGNVTDARRIFS 712 (806)
Q Consensus 638 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~ 712 (806)
...|...++++++.++.- .+...|..++..|.+ -|+.++|.+.|+
T Consensus 179 l~~A~a~lerAleLDP~~------------------------------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSY------------------------------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp HHHHHHHHHHHHHHCTTH------------------------------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc------------------------------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 567888888888765321 145688899999988 499999999999
Q ss_pred HHHHCCCCCC--HHhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC--CChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 713 ALLLTGFSPD--NFTYSTLIHGYAAV-GDINEAFNLRDEMLKINLV--PNIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 713 ~~~~~g~~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
+.++ +.|+ ..++...+..++.. |+.++|.+++++++..... |+.. +. ..++-++|..+++++.
T Consensus 229 rAL~--LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~----la----n~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 229 HLTR--YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK----LL----VILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHH--HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH----HH----HHHHHHHHHHHHHTHH
T ss_pred HHHH--hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh----HH----HHHHHHHHHHHHHHhH
Confidence 9999 8895 46888899999885 9999999999999995444 3332 22 3344466776666554
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.62 E-value=0.046 Score=44.07 Aligned_cols=85 Identities=15% Similarity=0.058 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--ChhcHHHHHHHHHhcCCHHHHHH
Q 037510 705 TDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINE---AFNLRDEMLKINLVP--NIATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 705 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~ 779 (806)
..+.+.|.+....|. |+..+--.+++++.+..+... ++.+++...+.+ .| .......|.-++.+.|++++|++
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444444332 455555556666666654443 666666665532 12 22344455566666666666666
Q ss_pred HHHHHHHCCCCCCH
Q 037510 780 LFCKLRQKGLTPTV 793 (806)
Q Consensus 780 ~~~~m~~~g~~p~~ 793 (806)
+++.+.+ +.|+.
T Consensus 96 ~~~~lL~--~eP~n 107 (126)
T 1nzn_A 96 YVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHH--hCCCC
Confidence 6666666 56653
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.32 Score=42.02 Aligned_cols=100 Identities=16% Similarity=0.245 Sum_probs=67.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 037510 631 TLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRI 710 (806)
Q Consensus 631 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 710 (806)
.....|+++.|.++.+++- +...|..|+.....+|+++-|.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l~-------------------------------------~~~~Wk~Lg~~AL~~gn~~lAe~c 56 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN-------------------------------------DSITWERLIQEALAQGNASLAEMI 56 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC-------------------------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHhC-------------------------------------CHHHHHHHHHHHHHcCChHHHHHH
Confidence 3457899999999988761 566899999999999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 711 FSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 711 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 782 (806)
|++... +..|.-.|...|+.+.-.++-+.....| -++.-..++.-.|+++++.+++.
T Consensus 57 y~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 57 YQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 998765 4456666666777766665555555433 22333334444555555555543
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.29 E-value=0.75 Score=39.68 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=63.5
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037510 560 SVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKID 639 (806)
Q Consensus 560 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 639 (806)
....+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+. ..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---------~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSF---------DKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---------HHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH---------HHHHHHHHHhCCHH
Confidence 3445677777777776654 25667777777777777777777777665421 23444455566666
Q ss_pred HHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHH
Q 037510 640 EANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSAL 714 (806)
Q Consensus 640 ~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (806)
.-.++.+.....| -++.....+.-.|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g-------------------------------------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE-------------------------------------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT-------------------------------------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc-------------------------------------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5555555444433 2344555666777777777777543
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.95 E-value=0.35 Score=38.91 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 037510 194 TCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGI 258 (806)
Q Consensus 194 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 258 (806)
.+...+..+..+|+-+.-.+++..+... -+|++...-.+..+|.+.|+..+|.+++.+..++|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344444455555555555555554322 234445555555555555555555555555555544
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.80 E-value=1.3 Score=35.75 Aligned_cols=140 Identities=16% Similarity=0.071 Sum_probs=80.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 037510 202 YCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEA 281 (806)
Q Consensus 202 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 281 (806)
+.-.|..++..++..+.... .+..-||-+|--....-+-+-..++++.+-+. -|. ..+|+....
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 33456677777777776653 24455565555555555555555555554432 111 123444444
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 282 ENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
...+-.+-. +...+...+..+...|+-++-.+++.++.. +.+|++...-.+..+|.+.|+..+|.+++.+.-+
T Consensus 81 i~C~~~~n~------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 81 VECGVINNT------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcc------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 444433311 334455566667777777777777777544 2355677777777777777777777777777766
Q ss_pred CCC
Q 037510 362 WNL 364 (806)
Q Consensus 362 ~~~ 364 (806)
.|+
T Consensus 154 kG~ 156 (172)
T 1wy6_A 154 KGE 156 (172)
T ss_dssp TTC
T ss_pred hhh
Confidence 663
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.20 E-value=0.73 Score=37.80 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHHhcCC---hhhHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 686 PNYVVYNIVIAGICKSGN---VTDARRIFSALLLTGFSPDN--FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|+..+-..+.+++.+..+ ..+++.+++++.+. .|+. .....|.-+|.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444444443 23445555554442 2321 1333444445555555555555555554
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.96 E-value=0.41 Score=38.73 Aligned_cols=70 Identities=16% Similarity=0.049 Sum_probs=31.7
Q ss_pred CHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 722 DNFTYSTLIHGYAAVGD---INEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 722 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
+..|--.+++++.+..+ ..+++.++++..+.+-.-....+..|.-++.+.|++++|+++.+.+.+ +.|+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 33333344444444432 234555555555432111223344444555555555555555555555 45543
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.95 E-value=10 Score=42.60 Aligned_cols=224 Identities=11% Similarity=-0.005 Sum_probs=109.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-------CCcHHHHHHHHHH
Q 037510 412 GLCRVGDVDEALHLWLMMLKRC--VCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGF-------YKNTITFNTMIKG 482 (806)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~li~~ 482 (806)
+....|+.++++.++...+..+ ..+....-..+.-+....|..+++..++...+...- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4566777777777776655421 111222333444455566665667777766664321 0111122233333
Q ss_pred HHhcCC-HHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHH
Q 037510 483 LCKMGK-MTEAQKIFDKMKELGCLPNIIT----YRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNY 557 (806)
Q Consensus 483 ~~~~g~-~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (806)
+.-.|. -+++.+.+..+.... +..+ -..+...+...|+.+....++..+ ... ...++.-.-.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~---------~e~-~~e~vrR~aa 529 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYS---------QET-QHGNITRGLA 529 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---------HHC-SCHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH---------hcc-CcHHHHHHHH
Confidence 333343 245566666655432 2211 122333445667766666666655 211 1112222233
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037510 558 LISVAFKSRELTSLVDLLAEMQTMGLYPNIVTY--GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRL 635 (806)
Q Consensus 558 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 635 (806)
+.-++.-.|+.+.+..+++.+... ..|....- .++.-+|+..|+.....+++..+.+.. ..+......+.-++...
T Consensus 530 lgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 530 VGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLL 607 (963)
T ss_dssp HHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTS
T ss_pred HHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhcc
Confidence 444455677888777777777653 12222211 133445667777666666777777531 22232222333334445
Q ss_pred CCHHHHHHHHHHHhh
Q 037510 636 GKIDEANIFLQKMVD 650 (806)
Q Consensus 636 g~~~~A~~~~~~~~~ 650 (806)
|+.+.+..+++.+.+
T Consensus 608 g~~e~v~rlv~~L~~ 622 (963)
T 4ady_A 608 RDYTTVPRIVQLLSK 622 (963)
T ss_dssp SSCSSHHHHTTTGGG
T ss_pred CCHHHHHHHHHHHHh
Confidence 665555555554443
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.53 E-value=2.6 Score=43.47 Aligned_cols=172 Identities=13% Similarity=0.077 Sum_probs=89.4
Q ss_pred ccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhc-CCCcChhh--HHHHHHHHHHcCChHHHHHHHHHHHHC--CCC--
Q 037510 117 EFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKY-GCIPSLRS--CNCLLSNLVKNGEGYVALLVYEQMMRV--GIV-- 189 (806)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~-- 189 (806)
+...+..+...++..|...|+++...+.+..+.+. |..+...+ -+.++..+......+.... ...... .+.
T Consensus 51 d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~--~~~i~~l~~vte~ 128 (445)
T 4b4t_P 51 DLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTR--ISVIETIRVVTEN 128 (445)
T ss_dssp STTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHH--HHHHHCCSSSSSC
T ss_pred chhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHH--HHHHHHHHHHhcc
Confidence 34455677778888888888888887777665543 22111111 1122222222332222111 111110 011
Q ss_pred ---C---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCcC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--
Q 037510 190 ---P---DVFTCSIVVNAYCKEKSMEKALDFVKEMENL--GFELN---VVTYNSLIDGYVSLGDLNGAKRVLEWTCEK-- 256 (806)
Q Consensus 190 ---~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 256 (806)
. .......+...+...|++.+|..++.++... |.... ...+..-++.|...+|+..|..++.++...
T Consensus 129 kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~ 208 (445)
T 4b4t_P 129 KIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF 208 (445)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc
Confidence 1 1112244566677777777777777776421 21111 345566667777777777777777765421
Q ss_pred --CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037510 257 --GISRT--AVTYTTLTKGYCKQHKMEEAENMLRRMKE 290 (806)
Q Consensus 257 --~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 290 (806)
...|+ ...+...+..+...+++.+|-+.|.+..+
T Consensus 209 ~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 209 KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 11111 12345556666667777777666666544
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.36 E-value=0.98 Score=37.40 Aligned_cols=104 Identities=17% Similarity=0.161 Sum_probs=64.0
Q ss_pred cChhhHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHh----HHHHHHH---HHHhcCChhHHHHHHHHHHHc
Q 037510 155 PSLRSCNCLLSNLVKNGEG------YVALLVYEQMMRVGIVPDVF----TCSIVVN---AYCKEKSMEKALDFVKEMENL 221 (806)
Q Consensus 155 ~~~~~~~~ll~~~~~~~~~------~~A~~~~~~m~~~~~~~~~~----~~~~l~~---~~~~~g~~~~a~~~~~~~~~~ 221 (806)
.|..+|-..+..+-+.|++ ++..++|++.... ++|+.. .|-.+.- .+...++.++|+++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3666777777777777777 7777777777663 455421 1111110 112336777888888777655
Q ss_pred CCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 037510 222 GFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISR 260 (806)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 260 (806)
+ +--..+|......-.+.|+++.|.+++......++.|
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2 2226666666666677788888888887777766543
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.21 E-value=0.37 Score=38.82 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhh
Q 037510 604 NKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDE---ANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESA 680 (806)
Q Consensus 604 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (806)
..+.+.|.+....| .++..+-..+..++.+.....+ ++.+++++.+.+ .|+
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~------------------------ 71 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKE------------------------ 71 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHH------------------------
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-Ccc------------------------
Confidence 34444455444444 3556666666666666655444 666666665542 010
Q ss_pred hcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH
Q 037510 681 RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN 723 (806)
Q Consensus 681 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 723 (806)
-.....-.|.-++.+.|++++|...++.+++ +.|+.
T Consensus 72 -----~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 72 -----EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred -----hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCC
Confidence 0122333455566677777777777777776 56654
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.07 E-value=14 Score=41.51 Aligned_cols=271 Identities=11% Similarity=0.030 Sum_probs=146.4
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCC--CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCcchHHHHHH
Q 037510 341 NGYCKLGQVCEAKRVLRCMGDWN--LRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGI-------EPSVVTYNTLLK 411 (806)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------~~~~~~~~~ll~ 411 (806)
-+....|+.++++.+++.....+ -.+....-..+.-+....|..+++.+++...+...- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34566788888888887655421 012222333344455666666678887777665321 011111122222
Q ss_pred HH--HhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHH--HHHHh
Q 037510 412 GL--CRVGDVDEALHLWLMMLKRCVCPNE--VGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMI--KGLCK 485 (806)
Q Consensus 412 ~~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li--~~~~~ 485 (806)
++ ...++ +++.+.+..++.... +.. ..-..+...+.-.|+.+....++..+.+.. +..+...+. -++..
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 33 33344 355566665555321 111 122234444556778777777777776642 223333333 34457
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH-HH---HHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHH
Q 037510 486 MGKMTEAQKIFDKMKELGCLPNIIT-YR---TLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISV 561 (806)
Q Consensus 486 ~g~~~~a~~~~~~~~~~~~~~~~~~-~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 561 (806)
.|+.+.+..+++.+... .+... |. .+.-+|+..|+.....+++..+. . ....++.-...+.-+
T Consensus 537 ~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~---------~-d~~d~VRraAViaLG 603 (963)
T 4ady_A 537 YGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV---------S-DSNDDVRRAAVIALG 603 (963)
T ss_dssp TTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH---------H-CSCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc---------c-CCcHHHHHHHHHHHH
Confidence 78989888888888764 23322 22 34456778889877777887762 1 222333333334445
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 562 AFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGML-NKAFKAYFDMIEKGFSPNVAICSKLVSTLC 633 (806)
Q Consensus 562 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 633 (806)
+...|+.+.+..+++.+.+.+ .|....-..+.-+....|+. .+++..+..+.. .+|..+-..-+.++.
T Consensus 604 lI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 604 FVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp HHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 555677777777776665543 44444334444444445543 678888888874 345554444444444
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.94 E-value=3.4 Score=42.59 Aligned_cols=196 Identities=13% Similarity=0.088 Sum_probs=119.2
Q ss_pred CChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHhHHHHHHHHH---
Q 037510 522 GNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTM-GLYPNIVTYGALISGW--- 597 (806)
Q Consensus 522 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~p~~~~~~~l~~~~--- 597 (806)
|+++.|.+.+-.+++... ..............++..+...|+++...+.+.-+.+. |..+.. ...++..+
T Consensus 30 ~~~~~a~e~ll~lEK~~r----~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~ 103 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTR----QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEY 103 (445)
T ss_dssp HHHHHHHHHHHHHHHHHS----SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhh----hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHH
Confidence 566777766655533211 23344556677888999999999999988877766653 322222 23333322
Q ss_pred -HccCChHHHHHHHHHHHH------cC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhh
Q 037510 598 -CDAGMLNKAFKAYFDMIE------KG-FSP---NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAIN 666 (806)
Q Consensus 598 -~~~g~~~~A~~~~~~~~~------~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 666 (806)
......+.... ...++ .| +.. .......|...+...|++.+|..++.++...-...+.
T Consensus 104 l~~~~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~--------- 172 (445)
T 4b4t_P 104 LKSSKSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME--------- 172 (445)
T ss_dssp HHHHCTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC---------
T ss_pred HhcCCchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc---------
Confidence 22333222111 12221 11 111 2334467788899999999999999998742111100
Q ss_pred hhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCCH--HhHHHHHHHHHhcCCHH
Q 037510 667 VDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT----GFSPDN--FTYSTLIHGYAAVGDIN 740 (806)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~--~~~~~l~~~~~~~g~~~ 740 (806)
... -...+...+..|...+++.+|..++.++... ...|+. ..+...+..+...++|.
T Consensus 173 -~~~----------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~ 235 (445)
T 4b4t_P 173 -MSE----------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYL 235 (445)
T ss_dssp -HHH----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHH
T ss_pred -HHH----------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 000 1235666778889999999999999887532 222332 25677888888899999
Q ss_pred HHHHHHHHHHH
Q 037510 741 EAFNLRDEMLK 751 (806)
Q Consensus 741 ~A~~~~~~~~~ 751 (806)
+|.+.|.++.+
T Consensus 236 ~a~~~y~e~~~ 246 (445)
T 4b4t_P 236 EVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988875
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.90 E-value=1.1 Score=37.01 Aligned_cols=106 Identities=13% Similarity=0.116 Sum_probs=76.1
Q ss_pred CCChHHHHHHHHHHHhcCCh------hhHHHHHHHHHHCCCCCCHH-hHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 037510 685 VPNYVVYNIVIAGICKSGNV------TDARRIFSALLLTGFSPDNF-TYSTLIH------GYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 685 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 751 (806)
+.|..+|-..+...-+.|+. ++-.++|+++... ++|+.. .|...+. .+...+|.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34778898888888888998 8888999998884 667542 2221111 12344899999999999988
Q ss_pred cCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 752 INLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 752 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 792 (806)
.+-+- ...+.....-=.++|++..|.+++.+.+..|-.|.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 52222 44444444445589999999999999999777664
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.54 E-value=1.1 Score=36.15 Aligned_cols=72 Identities=14% Similarity=0.046 Sum_probs=57.6
Q ss_pred CCCChHHHHHHHHHHHhcCC---hhhHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 684 CVPNYVVYNIVIAGICKSGN---VTDARRIFSALLLTGFSPDN--FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 684 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
..|++.+--.+.+++.+..+ ..+++.+++++.+.+ |+. ..+-.|+-++.+.|++++|.++.+.+++ +.|+-
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 45677777778888888876 457999999999844 643 4667889999999999999999999998 67854
Q ss_pred h
Q 037510 759 A 759 (806)
Q Consensus 759 ~ 759 (806)
.
T Consensus 112 ~ 112 (134)
T 3o48_A 112 K 112 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.44 E-value=2.1 Score=35.10 Aligned_cols=78 Identities=15% Similarity=0.055 Sum_probs=60.6
Q ss_pred CCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 037510 720 SPDNFTYSTLIHGYAAVGD---INEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTY 796 (806)
Q Consensus 720 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 796 (806)
.|+..+--.+++++.++.+ ..+++.+++...+.+-.-.......|.-++.+.|++++|+++.+.+.+ +.|+..--
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHH
Confidence 5677777788888888774 567999999999854222445667788899999999999999999999 89986544
Q ss_pred HHH
Q 037510 797 NIL 799 (806)
Q Consensus 797 ~~l 799 (806)
..|
T Consensus 114 ~~L 116 (144)
T 1y8m_A 114 GAL 116 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.98 E-value=2.3 Score=42.91 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhcHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSP-DNFTYSTLIHGYAAVGDINEAFNLRDEMLK-----INLVPNIATYN 762 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 762 (806)
+...++..+...|++++|+..++.+.. ..| +...|..++.+|.+.|+..+|++.|++..+ .|+.|.+.+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344566777788888888888888777 456 445788888888888888888888887654 47777766543
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.84 E-value=2.4 Score=46.46 Aligned_cols=53 Identities=13% Similarity=0.104 Sum_probs=47.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 695 IAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEM 749 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (806)
..-+...|+++-|+.+.++... ..|+.+ +|..|+.+|...|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4456678999999999999999 889875 9999999999999999999998886
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.31 E-value=13 Score=35.63 Aligned_cols=81 Identities=10% Similarity=-0.041 Sum_probs=44.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCChhHH
Q 037510 260 RTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKV---GKVDEAIRVLNEMLKTGLEMNLLIC 336 (806)
Q Consensus 260 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~ 336 (806)
-++..+..+...|.+.|++.+|...|-.- ...|...+..++.-+... |...++ +...-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-----~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~ 192 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG-----THDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFS 192 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS-----CHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC-----CCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHH
Confidence 36677788888888888888888766421 111344555555444443 333221 11112
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHh
Q 037510 337 NSLINGYCKLGQVCEAKRVLRCMG 360 (806)
Q Consensus 337 ~~li~~~~~~g~~~~A~~~~~~~~ 360 (806)
.+++ .|.-.|+...|..+|+...
T Consensus 193 RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 193 RLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHHH-HHHHhcCHHHHHHHHHHHH
Confidence 2222 3445677777777776553
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.72 E-value=9.9 Score=44.81 Aligned_cols=157 Identities=8% Similarity=-0.036 Sum_probs=103.3
Q ss_pred CChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhh-cCCCc--hhhHHHHHHHhhccCCCH
Q 037510 46 LNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCK-NNYAG--FLIWDELVRAYKEFAFSP 122 (806)
Q Consensus 46 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~ 122 (806)
..++.+..|..|.. .++.+...+++++...|++++|...|.+...... ..... ..-+..+.........-+
T Consensus 826 ~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 899 (1139)
T 4fhn_B 826 KQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLS 899 (1139)
T ss_dssp SCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSH
T ss_pred hhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHH
Confidence 45677788878854 2455567889999999999999999986532211 11100 111222222222333345
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcCh----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSL----RSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIV 198 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 198 (806)
..|..++..|-+.|.++.+++.-...++.....+. ..|..+...+...|++++|...+-.+..... -...+..+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 67888889999999999999888877654322121 2578888899999999999998888866433 34556667
Q ss_pred HHHHHhcCChhH
Q 037510 199 VNAYCKEKSMEK 210 (806)
Q Consensus 199 ~~~~~~~g~~~~ 210 (806)
+..+|..|..+.
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 777777666543
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.82 E-value=0.96 Score=38.31 Aligned_cols=102 Identities=14% Similarity=0.044 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC--C-
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLT-GFSPDN-------FTYSTLIHGYAAVGDINEAFNLRDEMLKI--NLV--P- 756 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~--p- 756 (806)
++-.-+..+...|.++.|+-+.+.+... +-.|+. .++..+++++...|++.+|...|+++++. .+. +
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444567788899999999888876653 123432 26778999999999999999999998651 110 0
Q ss_pred -------------------ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037510 757 -------------------NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTP 791 (806)
Q Consensus 757 -------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 791 (806)
+...-.-+..||.+.|++++|+.+++.++.+.-.|
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 11334557789999999999999999876544444
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.19 E-value=22 Score=34.32 Aligned_cols=81 Identities=10% Similarity=0.018 Sum_probs=49.6
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHH
Q 037510 686 PNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLV 765 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 765 (806)
-|+.....++..|.+.+++.+|...|- . |-.+....+..++.-+...+...++--++-+ .+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~dlfiaR---------------aV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTAPLYCAR---------------AV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGHHHHHHH---------------HH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccHHHHHHH---------------HH
Confidence 477788889999999999999988872 1 2333335665555555544432222222222 12
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 037510 766 SGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~m~ 785 (806)
--|.-.|+...|..+++...
T Consensus 195 L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 23556678888888766654
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.46 E-value=4.6 Score=44.32 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=53.1
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---------CHHHHHHHHHHHHH
Q 037510 685 VPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVG---------DINEAFNLRDEMLK 751 (806)
Q Consensus 685 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~~~ 751 (806)
+.+..=|..|+....+.+++++|.+.|+..+. ..-+..++..|+..|.+.+ +.+..+.+.-++..
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~--~RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~ 683 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIV--ARFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKIS 683 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHH
Confidence 34566689999988999999999999999988 5677788899999998877 77777777777664
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.32 E-value=17 Score=42.95 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHH
Q 037510 228 VTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTA----VTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGV 303 (806)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 303 (806)
.-|.-++..+.+.|.++.+.++-....+...+.+. ..|..+.+.+...|++++|...+-.+... .. -..+...
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~--r~~cLr~ 976 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SS--CHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HH--HHHHHHH
Confidence 45677888888888888888887776664322222 25777888888889999998888887765 22 3456777
Q ss_pred HHHHHHhcCChHHHHH
Q 037510 304 LIDGYCKVGKVDEAIR 319 (806)
Q Consensus 304 li~~~~~~g~~~~a~~ 319 (806)
++..+|..|..+.-..
T Consensus 977 LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 977 FVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHHHHCCHHHHHH
T ss_pred HHHHHHhCCChhhhhC
Confidence 8888888777665543
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.76 E-value=2 Score=43.47 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhH
Q 037510 726 YSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ-----KGLTPTVVTY 796 (806)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 796 (806)
...++.++...|++++|+..+..++. ..| +...+..|+.+|.+.|+..+|++.|+++.+ .|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44678888999999999999999988 456 777999999999999999999999998643 4999997763
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.36 E-value=35 Score=34.04 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=81.9
Q ss_pred hHHHHHHHHhcCCCh-------hHHHHHHHhhhhCCC-C-CCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCc
Q 037510 34 DDLLDSVLQKLRLNP-------DASLGFFQLASKQQK-F-RPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAG 104 (806)
Q Consensus 34 ~~~~~~vl~~~~~~~-------~~al~~f~~~~~~~~-~-~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~ 104 (806)
..+|..++..+..-| +..+..+.|+..... | ++ ..=..++..+...|++.+|..++..+.+.++.....
T Consensus 58 ~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~--~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~ 135 (394)
T 3txn_A 58 AKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ--SLEARLIALYFDTALYTEALALGAQLLRELKKLDDK 135 (394)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc
Confidence 334555555443322 446788899984422 2 22 122368899999999999999999888765432111
Q ss_pred hhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcC----CCcChhhHHH--HHHHHH-HcCChHHHH
Q 037510 105 FLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYG----CIPSLRSCNC--LLSNLV-KNGEGYVAL 177 (806)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~--ll~~~~-~~~~~~~A~ 177 (806)
..--+++..-++.|...|++..+...+....... +.|...+.-- -...+. ..+++..|.
T Consensus 136 --------------~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~ 201 (394)
T 3txn_A 136 --------------NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAF 201 (394)
T ss_dssp --------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred --------------hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHH
Confidence 1113566777888899999999998888765431 2222222111 123345 678888888
Q ss_pred HHHHHH
Q 037510 178 LVYEQM 183 (806)
Q Consensus 178 ~~~~~m 183 (806)
..|-+.
T Consensus 202 ~~F~ea 207 (394)
T 3txn_A 202 SYFYEA 207 (394)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.85 E-value=6.6 Score=40.23 Aligned_cols=98 Identities=8% Similarity=-0.066 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhcH----H
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN--FTYSTLIHGYAAVGDINEAFNLRDEMLKI-NLVPNIATY----N 762 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~----~ 762 (806)
++..++..|.+.|++++|.+.|.++......+.. ..+-..+..+...++|..+...++++... .-.+|.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677899999999999999999999986444443 37778899999999999999999998752 112232221 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 763 SLVSGLCNSGELDRAKRLFCKLRQK 787 (806)
Q Consensus 763 ~l~~~~~~~g~~~~A~~~~~~m~~~ 787 (806)
.-+..+...+++.+|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 2233455789999999998887643
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.25 E-value=29 Score=32.21 Aligned_cols=112 Identities=16% Similarity=0.179 Sum_probs=78.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 037510 631 TLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRI 710 (806)
Q Consensus 631 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 710 (806)
.+.+.|.+++|++..+.-++..+. |...=..++..+|-.|++++|.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~--------------------------------da~~R~~LfqLLcv~G~w~RA~~Q 53 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK--------------------------------DASLRSSFIELLCIDGDFERADEQ 53 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT--------------------------------CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc--------------------------------CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 456788999999999888887643 666667789999999999999999
Q ss_pred HHHHHHCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----ChhcHHHHHHHHH--hcCCHHHHHH
Q 037510 711 FSALLLTGFSPDNF----TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-----NIATYNSLVSGLC--NSGELDRAKR 779 (806)
Q Consensus 711 ~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~--~~g~~~~A~~ 779 (806)
++.+.+ +.|+.. .|..+|. |...-.+...-+-.| .......|+.++. ..|+.++|..
T Consensus 54 L~~~a~--l~p~~~~~a~~yr~lI~----------aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~ 121 (273)
T 1zbp_A 54 LMQSIK--LFPEYLPGASQLRHLVK----------AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 121 (273)
T ss_dssp HHHHHH--HCGGGHHHHHHHHHHHH----------HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHH--hCchhhHHHHHHHHHHH----------HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 999999 778764 3444443 233333333322233 2234455555544 5699999999
Q ss_pred HHHHHHH
Q 037510 780 LFCKLRQ 786 (806)
Q Consensus 780 ~~~~m~~ 786 (806)
+-..+.+
T Consensus 122 lr~~A~e 128 (273)
T 1zbp_A 122 LALQIEE 128 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888865
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.37 E-value=44 Score=32.32 Aligned_cols=171 Identities=10% Similarity=0.073 Sum_probs=92.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCCCHHHHHHHHH
Q 037510 441 YCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIF----DKMKELGCLPNIITYRTLSD 516 (806)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~ 516 (806)
|.++..-|.+.+++++|++++..-. ..+.+.|+...|.++. +-..+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3445555667777777777654322 2344556655544443 44445566777776666666
Q ss_pred HHHhcCChH-HHHHHHHHHHhcccChhhhhcC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHH
Q 037510 517 GYCKVGNLE-EAFKIKNLMERREILPSMEKEA--IVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGAL 593 (806)
Q Consensus 517 ~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l 593 (806)
.+.....-+ .=.++.+.+.... .+.+ ..-++..-..+...|.+.+++.+|..-|- .|-.+.+..+..+
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS-----~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~m 173 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWS-----KKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARM 173 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHH-----HHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHH-----hhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHH
Confidence 665544321 1122333332211 1222 23466777788889999999888887762 2334444566655
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037510 594 ISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVD 650 (806)
Q Consensus 594 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 650 (806)
+..+...+...+ ++......++ .|.-.++...|..+++...+
T Consensus 174 L~ew~~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 174 EYEWYKQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 555444332211 1222333333 35567888888887766553
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.27 E-value=14 Score=31.23 Aligned_cols=61 Identities=15% Similarity=0.052 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhhcC-CCcCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037510 125 FDMILKIYAQKGMLKNALHVFDNMGKYG-CIPSL-------RSCNCLLSNLVKNGEGYVALLVYEQMMR 185 (806)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 185 (806)
+-.-++.+...|.++.|+-+.+.+.... ..|++ .++..+.+++..++++..|...|++.++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4444555666777777777666654331 11221 1445556666667777777776666543
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.61 E-value=45 Score=31.98 Aligned_cols=81 Identities=12% Similarity=0.067 Sum_probs=48.4
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCChhcHH
Q 037510 686 PNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAV---GDINEAFNLRDEMLKINLVPNIATYN 762 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~ 762 (806)
.++.....++..|.+.|++.+|...|-. |-.-|...+..++.-+... |...++--++-++
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra------------- 194 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL------------- 194 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------------
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHH-------------
Confidence 4778899999999999999999987741 1101233555555544444 5444433222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 037510 763 SLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 763 ~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
+-.|.-.|+...|..+++...
T Consensus 195 --VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 --VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp --HHHHHHTTBHHHHHHHHHHHH
T ss_pred --HHHHHHhcCHHHHHHHHHHHH
Confidence 123445677777777777654
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.16 E-value=13 Score=28.33 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 037510 210 KALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEK 256 (806)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 256 (806)
+.++-++.+....+-|++.+..+.+.+|.+.+|+..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555555555556666666666666666666666666666666554
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.35 E-value=28 Score=32.29 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=36.9
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 037510 597 WCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFD 652 (806)
Q Consensus 597 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 652 (806)
+.+.|++++|++....-++.. +.|...-..++..+|-.|+++.|.+-++...+.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 456677777777777666653 4466666667777777777777777777666654
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.17 E-value=19 Score=27.36 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=48.2
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037510 568 LTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVST 631 (806)
Q Consensus 568 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 631 (806)
.=+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-...+ +.+...+|..+++-
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 3466677777777888999999999999999999999999999888764 23334566666543
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=75.42 E-value=92 Score=33.39 Aligned_cols=59 Identities=14% Similarity=-0.001 Sum_probs=39.5
Q ss_pred hhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChH
Q 037510 115 YKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGY 174 (806)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 174 (806)
+...+.+...-.....+....|+..+|......+-..|. ..+..|+.++..+.+.|...
T Consensus 95 ~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 95 SPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp CCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSC
T ss_pred ccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCC
Confidence 343345566666777777788887777777776665543 36677888888777766543
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.04 E-value=71 Score=31.88 Aligned_cols=167 Identities=12% Similarity=0.078 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhc-CCCc---ChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCCHhHH--
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKY-GCIP---SLRSCNCLLSNLVKN-GEGYVALLVYEQMMRVGIVPDVFTC-- 195 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~-~~~~~A~~~~~~m~~~~~~~~~~~~-- 195 (806)
.....|...|.+.|+.++..+++...... +.-+ ....-..++..+... +..+.-.++..+..+..- -+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45667889999999999999999876543 1111 122345666666553 334444455554443210 111223
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHHc--CCC---cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCChhh
Q 037510 196 ----SIVVNAYCKEKSMEKALDFVKEMENL--GFE---LNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEK--GISRTAVT 264 (806)
Q Consensus 196 ----~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 264 (806)
.-++..|...|++.+|..++.++.+. ... --..+|..-+..|...|++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 25677888899999998888887653 111 11345666677788888988888888776542 12122222
Q ss_pred HHH----HHHHHH-hcCCHHHHHHHHHHHHh
Q 037510 265 YTT----LTKGYC-KQHKMEEAENMLRRMKE 290 (806)
Q Consensus 265 ~~~----li~~~~-~~g~~~~a~~~~~~~~~ 290 (806)
... -...+. ..+++.+|...|-+..+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 211 123345 67888888887766543
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.46 E-value=19 Score=31.59 Aligned_cols=53 Identities=19% Similarity=0.090 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037510 739 INEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTP 791 (806)
Q Consensus 739 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 791 (806)
..++.++|..|...|+--. +..|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555555444332 2234444444555555555555555554444444
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.31 E-value=34 Score=34.90 Aligned_cols=60 Identities=5% Similarity=-0.136 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037510 159 SCNCLLSNLVKNGEGYVALLVYEQMMRVG--IVPDVFTCSIVVNAYCKEKSMEKALDFVKEM 218 (806)
Q Consensus 159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 218 (806)
+...+...|.+.|+++.|.+.|.++...- ..--...+-.+++.+...+++..+...+.++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34444555555555555555555544421 1112334444455555555555555555554
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.21 E-value=41 Score=27.22 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037510 570 SLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVST 631 (806)
Q Consensus 570 ~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 631 (806)
+..+-++.+....+.|++......+.+|.+.+++..|.++++-...+ ..+...+|..+++-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 55666777777788999999999999999999999999999888765 33445567666543
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.18 E-value=48 Score=26.84 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 037510 210 KALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCE 255 (806)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (806)
+..+-++.+...++-|+..+..+.+.+|.+.+|+..|.++|+-++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555555554444
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.60 E-value=64 Score=28.36 Aligned_cols=75 Identities=12% Similarity=-0.025 Sum_probs=48.3
Q ss_pred CCCCCHHHHHHHHHHHHh--cCCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 037510 547 AIVPSIDMYNYLISVAFK--SRELTSLVDLLAEMQTMGLYPN-IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN 621 (806)
Q Consensus 547 ~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 621 (806)
....|+.....-+...-. .+...++.++|..|..+|+--. ...|......+...|++.+|.++|+..++.+-.|-
T Consensus 72 rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 72 TYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp GGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344555444333332222 4446688888888887765443 44567777777788888888888888887766663
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=65.19 E-value=34 Score=25.88 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=50.5
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLF 781 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 781 (806)
..+++|..+-+=+...|- +.++--.-+..+...|++++|..+.+.. ..||...+-+| +-.+.|-.+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHH
Confidence 346777776665555332 2222223345667888888888777654 46787777665 345778888888877
Q ss_pred HHHHHCC
Q 037510 782 CKLRQKG 788 (806)
Q Consensus 782 ~~m~~~g 788 (806)
.++-.+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 7776554
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.07 E-value=56 Score=30.46 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=24.8
Q ss_pred HHHHHcCChhhHHHHHHHhhhcCCCcChh---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 037510 130 KIYAQKGMLKNALHVFDNMGKYGCIPSLR---SCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPD 191 (806)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~ 191 (806)
...++.|+++....+++. |..++.. .-...+...+..|+.+ +++.+.+.|..++
T Consensus 10 ~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~ 66 (285)
T 1wdy_A 10 IKAVQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPV 66 (285)
T ss_dssp HHHHHTTCHHHHHHHHHT----TCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHc----CCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCc
Confidence 334566776655555443 3222211 1123444555666654 3344445554443
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.02 E-value=34 Score=25.87 Aligned_cols=79 Identities=19% Similarity=0.083 Sum_probs=50.6
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLF 781 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 781 (806)
..+++|..+-+=+...|- +.++--.-+..+...|++++|..+.+.. ..||...+-+| +-.+.|-.+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHH
Confidence 346777766665555332 2222223345667888888888776654 46777777655 345788888888888
Q ss_pred HHHHHCC
Q 037510 782 CKLRQKG 788 (806)
Q Consensus 782 ~~m~~~g 788 (806)
.++-.+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 7777654
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=61.40 E-value=50 Score=24.96 Aligned_cols=51 Identities=18% Similarity=0.080 Sum_probs=31.1
Q ss_pred HHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 037510 131 IYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVG 187 (806)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 187 (806)
++-.+|++++|..+.+... .||...|-+|.. .+.|-.+++...+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3456677777776655443 467777665543 35566666666666665554
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=60.12 E-value=54 Score=24.86 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=29.8
Q ss_pred HHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 037510 132 YAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVG 187 (806)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 187 (806)
+-.+|++++|..+.+... .||...|-+|.. .+.|-.+++...+.++...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 456677777776665544 367776665544 34566666666665555444
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.40 E-value=68 Score=26.72 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 740 NEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 740 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 792 (806)
+++.++|..|...|+--. +..|......+...|++.+|.++++.-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 347777888877766553 34566677777788888888888888777766663
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=54.15 E-value=1.3e+02 Score=29.51 Aligned_cols=25 Identities=12% Similarity=0.353 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH
Q 037510 555 YNYLISVAFKSRELTSLVDLLAEMQ 579 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~~~ 579 (806)
...++.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4567888999999999999998865
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.43 E-value=1.1e+02 Score=25.39 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 037510 571 LVDLLAEMQTMGLYPN-IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSP 620 (806)
Q Consensus 571 a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 620 (806)
+.++|..|..+|+--. +..|......+...|++.+|.++|+..++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5666666666654332 3345555555666666666666666666655455
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.71 E-value=44 Score=28.32 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 705 TDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN 757 (806)
Q Consensus 705 ~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 757 (806)
+.+.++|..|..+|+--... -|...+..+-..|++.+|.++|+..++.+-.|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 55788899999888777654 677777888888999999999999988776663
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=46.91 E-value=3e+02 Score=29.48 Aligned_cols=115 Identities=10% Similarity=-0.102 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHHCCCCCChhHHHHH----HHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHH
Q 037510 313 KVDEAIRVLNEMLKTGLEMNLLICNSL----INGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAF 388 (806)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 388 (806)
+.+.|..++....+.. ..+......+ ...+...+...++...+...... ..+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 5566666666655432 1122222222 22222233234444555443332 122222333333444556666666
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 389 RLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLK 431 (806)
Q Consensus 389 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 431 (806)
..|..|..... ......--+..++...|+.++|..+|..+..
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 66666543211 1122233444555666666666666666653
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=46.80 E-value=1.5e+02 Score=27.34 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=8.6
Q ss_pred CCHHHHHHHHHHHHHCCCCC
Q 037510 382 CDMTEAFRLCAEMLRQGIEP 401 (806)
Q Consensus 382 g~~~~a~~~~~~m~~~g~~~ 401 (806)
+......++++.+.+.|..+
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCS
T ss_pred cccchHHHHHHHHHHcCCCC
Confidence 33333344444444554443
No 281
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=46.22 E-value=1.4e+02 Score=27.96 Aligned_cols=19 Identities=26% Similarity=0.071 Sum_probs=8.7
Q ss_pred HHHHHhcCCHhHHHHHHHH
Q 037510 340 INGYCKLGQVCEAKRVLRC 358 (806)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~ 358 (806)
+...+..|..+-+.-+++.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHc
Confidence 3334455555544444443
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.70 E-value=1.4e+02 Score=25.18 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 037510 570 SLVDLLAEMQTMGLYPN-IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN 621 (806)
Q Consensus 570 ~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 621 (806)
++.++|..|..+|+--. +..|......+...|++.+|.++|+..++.+-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 35667777777665433 34556666666777777777777777777665553
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.46 E-value=1.2e+02 Score=27.49 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=17.5
Q ss_pred HHHHHHcCChhhHHHHHHHhhh
Q 037510 129 LKIYAQKGMLKNALHVFDNMGK 150 (806)
Q Consensus 129 ~~~~~~~g~~~~A~~~~~~~~~ 150 (806)
+..+....++++|++++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3567788999999999987664
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.29 E-value=81 Score=30.91 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHh
Q 037510 335 ICNSLINGYCKLGQVCEAKRVLRCMG 360 (806)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~~~~~~~ 360 (806)
....+|.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 35667777888888888888888765
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=42.25 E-value=1.9e+02 Score=25.84 Aligned_cols=18 Identities=6% Similarity=0.051 Sum_probs=7.9
Q ss_pred hcCChhHHHHHHHHHHHc
Q 037510 204 KEKSMEKALDFVKEMENL 221 (806)
Q Consensus 204 ~~g~~~~a~~~~~~~~~~ 221 (806)
+.|+.+.+..+++.+.+.
T Consensus 18 ~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 444444444444443333
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=42.20 E-value=1.9e+02 Score=25.77 Aligned_cols=8 Identities=13% Similarity=0.231 Sum_probs=3.4
Q ss_pred HHhcCCHH
Q 037510 413 LCRVGDVD 420 (806)
Q Consensus 413 ~~~~~~~~ 420 (806)
.+..|+.+
T Consensus 184 A~~~~~~~ 191 (240)
T 3eu9_A 184 AVLAGNTT 191 (240)
T ss_dssp HHHHTCHH
T ss_pred HHHcCCHH
Confidence 33444443
No 287
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.91 E-value=1.2e+02 Score=27.08 Aligned_cols=50 Identities=14% Similarity=-0.023 Sum_probs=22.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcchH--HHHHHHHHhcCCHHHHHHHHHH
Q 037510 375 VDGYCRECDMTEAFRLCAEMLRQGIEPSVVTY--NTLLKGLCRVGDVDEALHLWLM 428 (806)
Q Consensus 375 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~ 428 (806)
+...+..|+.+- ++.+++.|..++.... .+.+....+.|+.+-+..+++.
T Consensus 181 L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 181 LHWAVLAGNTTV----ISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHHHTCHHH----HHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHH----HHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 344455666543 3334444555543211 1233444555665555444443
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.03 E-value=1.9e+02 Score=26.18 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHH
Q 037510 505 LPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMY 555 (806)
Q Consensus 505 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (806)
.++.......+..+.+.|+.+.|..+|-+.....+...+..-+..-++..|
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Y 138 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNY 138 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 345666667778888899999999988776443333333333333344444
No 289
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.36 E-value=1.3e+02 Score=31.16 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCh--hhH-HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037510 227 VVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGI-SRTA--VTY-TTLTKGYCKQHKMEEAENMLRRMKEE 291 (806)
Q Consensus 227 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~-~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (806)
...+|.+++.|...+.++.|..+..+..--.. .+|. ..| -.+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56788888999999999999999988752100 0111 112 23456677788999999888887764
No 290
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.94 E-value=72 Score=29.35 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=9.9
Q ss_pred HhCCCHHHHHHHHHHHHHcCC
Q 037510 238 VSLGDLNGAKRVLEWTCEKGI 258 (806)
Q Consensus 238 ~~~g~~~~A~~~~~~~~~~~~ 258 (806)
++.|+.+....+++.+.+.|.
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~ 33 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKK 33 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTC
T ss_pred HHhCCHHHHHHHHHHHHhcCC
Confidence 344555555455554444433
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=38.47 E-value=2.1e+02 Score=25.43 Aligned_cols=52 Identities=12% Similarity=-0.022 Sum_probs=29.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHH
Q 037510 233 LIDGYVSLGDLNGAKRVLEWTCEKGISRTAVT--YTTLTKGYCKQHKMEEAENM 284 (806)
Q Consensus 233 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~ 284 (806)
.+...++.|+.+....+++.+.+.+..++... -.+.+...+..|+.+-+..+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 65 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHH
Confidence 34556677888888888877766665444321 11233444556665443333
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.57 E-value=69 Score=28.71 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037510 704 VTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP 756 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 756 (806)
.+++.++|..|...|+.-... -|...+..+-..|++.+|.++|+..++.+-+|
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 368888999999988777654 67788888888999999999999988876666
No 293
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=36.36 E-value=2.2e+02 Score=24.92 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037510 374 LVDGYCRE---CDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGD-----VDEALHLWLMMLKRCVCPNEVGYCTLL 445 (806)
Q Consensus 374 li~~~~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~ 445 (806)
+|+++.++ .+.+.|+-++-+|++.| .|....-..++.+.-.-|. +..|...++.....|.+--.......+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 95 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVV 95 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 037510 446 DILFNKGDFYGAVKLWNNILA 466 (806)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~~~~ 466 (806)
-.++.+-+...+...++.+.+
T Consensus 96 iyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 96 VDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 294
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=35.51 E-value=53 Score=29.43 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 740 NEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 740 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 792 (806)
+++.++|..|...||--. ...|......|...|++.+|.++|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 578899999999887764 45678888899999999999999999998887884
No 295
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=33.95 E-value=2.2e+02 Score=24.50 Aligned_cols=87 Identities=11% Similarity=0.033 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHCCCCCCHH---hHHHHHHHHHhcCCH-HHHHHHHHHHHH-cCCCCChhcH--HHHHHHHHhcCCHHH
Q 037510 704 VTDARRIFSALLLTGFSPDNF---TYSTLIHGYAAVGDI-NEAFNLRDEMLK-INLVPNIATY--NSLVSGLCNSGELDR 776 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~~---~~~~l~~~~~~~g~~-~~A~~~~~~~~~-~~~~p~~~~~--~~l~~~~~~~g~~~~ 776 (806)
.....++.+.+++.|..++.. -.++.+...+..|.. ..-..+++-+++ .|..++.... .+-+....+.|+. +
T Consensus 90 ~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~-~ 168 (186)
T 3t8k_A 90 ITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP-I 168 (186)
T ss_dssp HHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCH-H
T ss_pred hhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCH-H
Confidence 444567777888888777653 221222222233332 345567777777 7776654321 1122333455664 4
Q ss_pred HHHHHHH-HHHCCCCC
Q 037510 777 AKRLFCK-LRQKGLTP 791 (806)
Q Consensus 777 A~~~~~~-m~~~g~~p 791 (806)
+.+++.+ +.+.+++.
T Consensus 169 ~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 169 ALKMMEDYIKKYNLKE 184 (186)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhccc
Confidence 4454444 44444443
No 296
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.53 E-value=4.2e+02 Score=27.39 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCC-CcC---hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGC-IPS---LRSCNCLLSNLVKNGEGYVALLVYEQMMR 185 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 185 (806)
.+.+.+++.|...+.++.|..+..+..--.. .++ ..-+..+...+.-++++.+|.+.|....+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4466666777777777777777666542100 011 11122345555666666666666666554
No 297
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=33.37 E-value=3.8e+02 Score=27.24 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=30.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHcCC
Q 037510 204 KEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGD-----LNGAKRVLEWTCEKGI 258 (806)
Q Consensus 204 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~ 258 (806)
+.++.+.|+.++.+|.+.|..|....-..++.+.-.-|. ..-|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 346777777777777777765555444444555444443 2234445555555443
No 298
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.17 E-value=3.7e+02 Score=30.73 Aligned_cols=133 Identities=7% Similarity=0.002 Sum_probs=73.8
Q ss_pred HHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 037510 126 DMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKE 205 (806)
Q Consensus 126 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 205 (806)
..++..+...|..+-|.++..... .++..-..+..+|...|++++|...|++.. .|+..+......
T Consensus 814 ~~l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~-------- 879 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV-------- 879 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG--------
T ss_pred HHHHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc--------
Confidence 345566666777666555443322 244444566777778888888888887653 233222111000
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcC
Q 037510 206 KSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTA----VTYTTLTKGYCKQH 276 (806)
Q Consensus 206 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 276 (806)
......++..... ......-|..++..+-+.+-++.+.++.+...+.--..|. ..|+.+.++.+..|
T Consensus 880 --~~~~~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 --LREFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp --GHHHHHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred --hhhhhhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0011111111100 0112346888999999999999999998888864322233 35667777776654
No 299
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=31.35 E-value=1.5e+02 Score=25.05 Aligned_cols=54 Identities=19% Similarity=0.085 Sum_probs=42.6
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCC--CCH---------------HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 697 GICKSGNVTDARRIFSALLLTGFS--PDN---------------FTYSTLIHGYAAVGDINEAFNLRDEML 750 (806)
Q Consensus 697 ~~~~~g~~~~A~~~~~~~~~~g~~--p~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (806)
+|-+..++..|+..++.+++-.+. ||. .-|+.++..|.+.|+.+||+..+..--
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 677889999999999999953222 321 257889999999999999999987643
No 300
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=30.15 E-value=93 Score=28.55 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=7.4
Q ss_pred HhcCCHHHHHHHHHHH
Q 037510 484 CKMGKMTEAQKIFDKM 499 (806)
Q Consensus 484 ~~~g~~~~a~~~~~~~ 499 (806)
+..|+.+-+..+++.-
T Consensus 233 ~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 233 AKTGKIGIFQHIIRRE 248 (260)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhC
Confidence 3445555444444443
No 301
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=29.34 E-value=38 Score=22.73 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 037510 174 YVALLVYEQMMRVGIVPDVFTCSIVVNAY 202 (806)
Q Consensus 174 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 202 (806)
++|...|.+|++..-.+...||...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 46666666666654444556666666665
No 302
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.84 E-value=2.7e+02 Score=23.76 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=7.3
Q ss_pred HHHHHHHHHCCCCCC
Q 037510 388 FRLCAEMLRQGIEPS 402 (806)
Q Consensus 388 ~~~~~~m~~~g~~~~ 402 (806)
.++++.+++.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 444445555554443
No 303
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=28.39 E-value=3.6e+02 Score=24.99 Aligned_cols=22 Identities=32% Similarity=0.164 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 037510 302 GVLIDGYCKVGKVDEAIRVLNE 323 (806)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~ 323 (806)
.+.+...+..|+.+-+.-+++.
T Consensus 162 ~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 162 LSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHcChHHHHHHHHHc
Confidence 3344455566776666555554
No 304
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.92 E-value=4.9e+02 Score=26.37 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=12.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCC
Q 037510 381 ECDMTEAFRLCAEMLRQGIEP 401 (806)
Q Consensus 381 ~g~~~~a~~~~~~m~~~g~~~ 401 (806)
..+.+.|+.++.+|++.|..|
T Consensus 268 gsd~daAl~~la~ml~~Gedp 288 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDP 288 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 355666666666666665444
No 305
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.77 E-value=1.6e+02 Score=26.84 Aligned_cols=22 Identities=23% Similarity=0.101 Sum_probs=10.6
Q ss_pred HHhCCCHHHHHHHHHHHHHcCC
Q 037510 237 YVSLGDLNGAKRVLEWTCEKGI 258 (806)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~ 258 (806)
.++.|+.+....+++.+.+.|.
T Consensus 9 A~~~g~~~~v~~ll~~l~~~g~ 30 (256)
T 2etb_A 9 VVSRGVPEELTGLLEYLRWNSK 30 (256)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHHcCC
Confidence 3444555555445554444443
No 306
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.55 E-value=56 Score=21.27 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCC--HHHHHHHHHHHH
Q 037510 745 LRDEMLKINLVPNIATYNSLVSGLCNSGE--LDRAKRLFCKLR 785 (806)
Q Consensus 745 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~ 785 (806)
.++.+++.|+.++ ....++.+.|. ++.|++++.+|-
T Consensus 12 mlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 12 MLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHhc
Confidence 3455555555443 22345556666 777777777764
No 307
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=26.10 E-value=2.1e+02 Score=21.52 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCChhcHHHH
Q 037510 704 VTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEML-----KINLVPNIATYNSL 764 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~l 764 (806)
.-.|.++.++..+-|+.|+..+..-++..|...+- + +.++.++.. ..|..|+....+.+
T Consensus 25 ~Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 25 SASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred hccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 34577778888888899998888888888887764 2 444444333 24666666655444
No 308
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.65 E-value=3e+02 Score=23.54 Aligned_cols=15 Identities=0% Similarity=0.056 Sum_probs=8.3
Q ss_pred HHHHHHHHHcCCCCC
Q 037510 423 LHLWLMMLKRCVCPN 437 (806)
Q Consensus 423 ~~~~~~~~~~~~~~~ 437 (806)
.++.+.+++.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 455555666665544
No 309
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=25.25 E-value=4e+02 Score=24.48 Aligned_cols=48 Identities=19% Similarity=0.150 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHH---cCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHhh
Q 037510 603 LNKAFKAYFDMIE---KGFSPNVAICSKLVS-----TLCRLGKIDEANIFLQKMVD 650 (806)
Q Consensus 603 ~~~A~~~~~~~~~---~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 650 (806)
.+.|.+.|+++.+ ..++|...+...|+- -|--.+++++|..+.+++.+
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566777776653 346776555444432 23457999999888777654
No 310
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=25.04 E-value=4.5e+02 Score=24.97 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=26.8
Q ss_pred HHHHHcCChhhHHHHHHHhhhcCCCcChh----hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 037510 130 KIYAQKGMLKNALHVFDNMGKYGCIPSLR----SCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPD 191 (806)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~ 191 (806)
..-++.|+++-+..+++. |..++.. -++ -+...+..|+.+- .+.+++.|..++
T Consensus 30 ~~Av~~g~~~~V~~LL~~----Gadvn~~~~~~g~T-pLh~A~~~g~~~i----v~~Ll~~ga~~~ 86 (337)
T 4g8k_A 30 IKAVQNEDVDLVQQLLEG----GANVNFQEEEGGWT-PLHNAVQMSREDI----VELLLRHGADPV 86 (337)
T ss_dssp HHHHHTTCHHHHHHHHHH----TCCTTCCCTTTCCC-HHHHHHHTTCHHH----HHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHC----CCCCCccCCCCCcC-HHHHHHHcCCHHH----HHHHHHcCCchh
Confidence 334577887766655553 4444322 122 3444556676543 344445554443
No 311
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.14 E-value=4.7e+02 Score=24.85 Aligned_cols=67 Identities=12% Similarity=0.182 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCC
Q 037510 440 GYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGK--MTEAQKIFDKMKELGCLPN 507 (806)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~ 507 (806)
....++.-|...|+.++|...++++.... .....+...+..++-+.++ .+....++..+.+.|+-+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~-f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCc-chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 34567888888999999999998886321 1123334444555554333 4556677777777665443
No 312
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.45 E-value=3.3e+02 Score=22.90 Aligned_cols=63 Identities=8% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHH------HHHhcCCHHHHHHHHHHHHh
Q 037510 227 VVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISR--TAVTYTTLTK------GYCKQHKMEEAENMLRRMKE 290 (806)
Q Consensus 227 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~------~~~~~g~~~~a~~~~~~~~~ 290 (806)
...+..-+..|-. |++-+|.++++..-.....+ ....|..||. ...+.|+...|..++.+...
T Consensus 33 ~~~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 33 RRAVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 313
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.19 E-value=2.3e+02 Score=23.39 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 037510 160 CNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEK 206 (806)
Q Consensus 160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 206 (806)
-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 29 R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 29 REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444444444555555555544443334444444444444433
No 314
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=22.76 E-value=3.6e+02 Score=23.03 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHCCCCCCc
Q 037510 386 EAFRLCAEMLRQGIEPSV 403 (806)
Q Consensus 386 ~a~~~~~~m~~~g~~~~~ 403 (806)
...++.+.+++.|..++.
T Consensus 92 ~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 92 GTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHHTTCCSSS
T ss_pred hHHHHHHHHHHCCCCCCc
Confidence 344555555555555443
No 315
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.67 E-value=4.5e+02 Score=24.11 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcC-ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037510 690 VYNIVIAGICKSG-NVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGL 768 (806)
Q Consensus 690 ~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 768 (806)
+-...+.++...| ....+...+..+.+ .++..+-...+.++.+.|+ .+++..+.++++. ++ .....+.++
T Consensus 175 vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~-~~~~~~L~~~l~d---~~--vr~~a~~aL 245 (280)
T 1oyz_A 175 VRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKD-KRVLSVLCDELKK---NT--VYDDIIEAA 245 (280)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTC-GGGHHHHHHHHTS---SS--CCHHHHHHH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCC-HhhHHHHHHHhcC---cc--HHHHHHHHH
Confidence 3334444444444 23455555555544 3555555566677777775 3455555555542 33 334456677
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhh
Q 037510 769 CNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYC 804 (806)
Q Consensus 769 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 804 (806)
.+.|. .++...+.++.+. .++...-+..+.++.
T Consensus 246 ~~i~~-~~~~~~L~~~l~~--~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 246 GELGD-KTLLPVLDTMLYK--FDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHCC-GGGHHHHHHHHTT--SSCCHHHHHHHHHHT
T ss_pred HhcCc-hhhhHHHHHHHhc--CCCcHHHHHHHHHhh
Confidence 77777 4677777777653 344445455555543
No 316
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.65 E-value=3.8e+02 Score=25.93 Aligned_cols=14 Identities=0% Similarity=-0.040 Sum_probs=6.4
Q ss_pred HhcCCHhHHHHHHH
Q 037510 344 CKLGQVCEAKRVLR 357 (806)
Q Consensus 344 ~~~g~~~~A~~~~~ 357 (806)
+..|+.+-+..+++
T Consensus 181 ~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 181 MEFRNREALDLMMD 194 (364)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34455544444443
No 317
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.44 E-value=3.9e+02 Score=23.32 Aligned_cols=93 Identities=17% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHc---CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-----hhHHHHHHHHHHHcCCCcCHHHHHHHH
Q 037510 163 LLSNLVKN---GEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKS-----MEKALDFVKEMENLGFELNVVTYNSLI 234 (806)
Q Consensus 163 ll~~~~~~---~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~~li 234 (806)
+++++.|. .+.+.|+-++-+|++.|-.|.-..-..++.+.-..|. +..|...++.....|.+--.......+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 89 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAI 89 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Q ss_pred HHHHhCCCHHHHHHHHHHHHH
Q 037510 235 DGYVSLGDLNGAKRVLEWTCE 255 (806)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~~~~ 255 (806)
-.++..-.-..+...++...+
T Consensus 90 iyLA~aPKSNs~y~A~~~A~~ 110 (201)
T 3bge_A 90 IYLSVAPKSNAVYTAFNTAKQ 110 (201)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 318
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.16 E-value=1.8e+02 Score=24.45 Aligned_cols=69 Identities=7% Similarity=0.064 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCChhHHHHHHHHHHhcCC
Q 037510 279 EEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKT--GLEMNLLICNSLINGYCKLGQ 348 (806)
Q Consensus 279 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~ 348 (806)
+.+++-+++..+..|...+. .-..++..+...+..-.|.++++.+.+. ++..+..|..--++.+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 33444444443333555543 2334455555555666677777777665 555555555545555555554
No 319
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.73 E-value=1.3e+02 Score=25.49 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcC
Q 037510 161 NCLLSNLVKNGEGYVALLVYEQMMRV--GIVPDVFTCSIVVNAYCKEK 206 (806)
Q Consensus 161 ~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g 206 (806)
..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 34444444444444555555555443 33333334333334444333
No 320
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.37 E-value=2e+02 Score=23.55 Aligned_cols=41 Identities=17% Similarity=0.011 Sum_probs=16.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 037510 163 LLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYC 203 (806)
Q Consensus 163 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 203 (806)
++..+...+..-.|.++++.+.+.+...+..|....+..+.
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 67 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFR 67 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHH
Confidence 33333333344444444444444333333333333333333
No 321
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.36 E-value=4.3e+02 Score=23.35 Aligned_cols=99 Identities=9% Similarity=0.013 Sum_probs=0.0
Q ss_pred ChhcHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCCh
Q 037510 367 DSFSFNTLVDGYCRE---CDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGD-----VDEALHLWLMMLKRCVCPNE 438 (806)
Q Consensus 367 ~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~ 438 (806)
+-..+.-+|+++.|+ .+.+.|+-++-+|++.|-.|....-..++.+.-.-|. +..|...++....-|.+--.
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~ 110 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGL 110 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTH
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHH
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037510 439 VGYCTLLDILFNKGDFYGAVKLWNNILA 466 (806)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (806)
......+-.++.+-+...+ ..++.+.+
T Consensus 111 i~LaqaviyLA~APKSNs~-~A~~~A~~ 137 (213)
T 3ctd_A 111 FFLSQASLYLAISPKSNST-KSIFKAME 137 (213)
T ss_dssp HHHHHHHHHHHHSCCCCGG-GHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHH-HHHHHHHH
No 322
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.17 E-value=3.5e+02 Score=22.42 Aligned_cols=94 Identities=13% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHh--cCCHhHHHHHHHHHHHCCCCCCHhH
Q 037510 512 RTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFK--SRELTSLVDLLAEMQTMGLYPNIVT 589 (806)
Q Consensus 512 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~g~~p~~~~ 589 (806)
..++.-|...|+.++|.+.++++ .........+...+..++-+ ....+.+..++..+.+.|+-+....
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL----------~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL----------EVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH----------TCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh----------CCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Q ss_pred HHHHHHHHHccCChH----HHHHHHHHHHH
Q 037510 590 YGALISGWCDAGMLN----KAFKAYFDMIE 615 (806)
Q Consensus 590 ~~~l~~~~~~~g~~~----~A~~~~~~~~~ 615 (806)
...+...+....+.. .|..++.+++.
T Consensus 83 ~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~ 112 (152)
T 2ion_A 83 KRGYERIYNEIPDINLDVPHSYSVLERFVE 112 (152)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhChHhccCccchHHHHHHHHH
No 323
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.86 E-value=5.7e+02 Score=24.63 Aligned_cols=23 Identities=4% Similarity=0.157 Sum_probs=12.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 037510 161 NCLLSNLVKNGEGYVALLVYEQM 183 (806)
Q Consensus 161 ~~ll~~~~~~~~~~~A~~~~~~m 183 (806)
..++.-|...|+.++|...++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 44455555555555555555544
Done!