Query 037512
Match_columns 278
No_of_seqs 201 out of 1144
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 13:01:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2335 Secreted and surface p 99.9 3.3E-24 7.2E-29 187.7 8.5 136 62-213 45-184 (187)
2 PF02469 Fasciclin: Fasciclin 99.8 9.7E-22 2.1E-26 158.9 5.2 125 75-210 1-128 (128)
3 smart00554 FAS1 Four repeated 99.8 1.4E-19 3.1E-24 140.9 5.2 96 105-211 1-99 (99)
4 KOG1437 Fasciclin and related 99.0 2.1E-10 4.5E-15 117.5 4.9 134 62-210 371-507 (682)
5 KOG1437 Fasciclin and related 98.9 3.8E-09 8.2E-14 108.4 9.7 131 65-214 508-645 (682)
6 PF12200 DUF3597: Domain of un 54.6 20 0.00043 30.2 4.0 35 61-95 45-87 (127)
7 PF13956 Ibs_toxin: Toxin Ibs, 38.6 17 0.00037 20.7 0.9 13 1-13 1-13 (19)
8 PRK15324 type III secretion sy 25.4 47 0.001 31.0 2.0 36 78-116 33-68 (252)
9 PF08139 LPAM_1: Prokaryotic m 25.0 37 0.0008 20.8 0.8 12 1-12 6-17 (25)
10 KOG2675 Adenylate cyclase-asso 24.8 1E+02 0.0022 31.3 4.2 11 41-51 233-243 (480)
11 TIGR00247 conserved hypothetic 20.9 1.6E+02 0.0034 28.3 4.7 34 58-91 44-80 (342)
12 KOG0074 GTP-binding ADP-ribosy 20.2 78 0.0017 27.8 2.2 36 165-206 60-95 (185)
No 1
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=3.3e-24 Score=187.67 Aligned_cols=136 Identities=22% Similarity=0.386 Sum_probs=116.3
Q ss_pred CCcccHHHHHHHCCChHHHHHHHHhcCchHHHHhhhcCCCCCeEEEecCcHHHhcCCcccccCCC----HHHHHhhcccc
Q 037512 62 SGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSLN----DGEKESLMQFH 137 (278)
Q Consensus 62 ~~~~nI~~iL~k~g~FstF~~LL~~tgl~~~L~~qL~~s~ggiTIFAPtD~AFs~L~~g~Ln~L~----~~ql~~LL~yH 137 (278)
-...+|.+.....++|++|..+++..+|.+.|++ .|.||||||||+||++|+.++++.|. .++|+++|.||
T Consensus 45 ~~~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~-----~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYH 119 (187)
T COG2335 45 GNRADIVESAANNPSFTTLVAALKAAGLVDTLNE-----TGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYH 119 (187)
T ss_pred cchhHHHHHHccCcchHHHHHHHHhhhhHHHhcC-----CCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEE
Confidence 4567899999899999999999999999999998 89999999999999999999988764 46999999999
Q ss_pred cccCccCcccccccCCCcccccCCCCcceEeEEEEecCCeEEEeeCcccceEeeeecccCCeEEEEeCcccCCCCC
Q 037512 138 VLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNL 213 (278)
Q Consensus 138 Vlp~~~s~s~f~~~snpv~Tlag~~~~~~~~LnVt~~g~~V~i~tG~~~a~I~~~v~~~~ngvIy~IDkVLlP~~i 213 (278)
|+++.++.+++.. .+.++|+.|. .++|...++.|.| +++++....+..+||+||+||+||+|++.
T Consensus 120 Vv~Gk~~~~~l~~-~~~v~t~~G~------~~~i~~~~~~~~V----n~a~v~~~di~a~NgvIhvID~Vl~Pp~~ 184 (187)
T COG2335 120 VVEGKITAADLKS-SGSVKTVQGA------DLKIKVTGGGVYV----NDATVTIADINASNGVIHVIDKVLIPPMD 184 (187)
T ss_pred EEcCcccHHHhhc-cccceeecCc------eEEEEEcCCcEEE----eeeEEEeccEeccCcEEEEEeeeccCCCc
Confidence 9999999999986 5788998775 3555554555777 36777776666778999999999999875
No 2
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.84 E-value=9.7e-22 Score=158.85 Aligned_cols=125 Identities=26% Similarity=0.422 Sum_probs=92.3
Q ss_pred CChHHHHHHHHhcCchHHHHhhhcCCCCCeEEEecCcHHHhcCCcccccCC--CHHHHHhhcccccccCccCcccccccC
Q 037512 75 GHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSL--NDGEKESLMQFHVLSTYIPLSQFQTVS 152 (278)
Q Consensus 75 g~FstF~~LL~~tgl~~~L~~qL~~s~ggiTIFAPtD~AFs~L~~g~Ln~L--~~~ql~~LL~yHVlp~~~s~s~f~~~s 152 (278)
++|++|.++|+.+|+.+.|++ +.+.+|||||+|+||++++.+..+.+ ..++++++|+|||+++.++.+++....
T Consensus 1 ~~~s~f~~~l~~~~l~~~l~~----~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~~ 76 (128)
T PF02469_consen 1 PDLSTFSRLLEQAGLADLLND----SDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNGK 76 (128)
T ss_dssp -TTHHHHHHHHHTTCHHHHGC----SSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCHH
T ss_pred CCHHHHHHHHHHcCCHHHHhc----CCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhcccc
Confidence 369999999999999999952 26899999999999999965444444 567999999999999999999998642
Q ss_pred CCccc-ccCCCCcceEeEEEEecCCeEEEeeCcccceEeeeecccCCeEEEEeCcccCC
Q 037512 153 NPLRT-NAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLP 210 (278)
Q Consensus 153 npv~T-lag~~~~~~~~LnVt~~g~~V~i~tG~~~a~I~~~v~~~~ngvIy~IDkVLlP 210 (278)
..++| +.|+ .+.++....++.+.|+. +++|.......+||+||.||+||+|
T Consensus 77 ~~~~t~~~g~----~~~v~~~~~~~~~~v~~---~a~i~~~~~~~~nG~ih~id~vL~P 128 (128)
T PF02469_consen 77 QTLETLLNGQ----PLRVSSSPSNGTIYVNG---KARIVKSDIEASNGVIHIIDDVLIP 128 (128)
T ss_dssp EEEEBSSTTC----EEEEEEEGGTTEEEECC---EEEESEEEEEESSEEEEEESS-TSS
T ss_pred ccceeccCCC----EEEEEEEecCCceEecC---ceEEEeCCEEeCCEEEEEECceECc
Confidence 35777 4443 45555553477888842 4788765446667999999999998
No 3
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.78 E-value=1.4e-19 Score=140.93 Aligned_cols=96 Identities=31% Similarity=0.470 Sum_probs=76.3
Q ss_pred EEEecCcHHHhcCCcccccCCCHH-HHHhhcccccccCccCcccccccCCCcccccCCCCcceEeEEEEecC--CeEEEe
Q 037512 105 TIFAPADDAFSSLSSGTLNSLNDG-EKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYP--NSVNIS 181 (278)
Q Consensus 105 TIFAPtD~AFs~L~~g~Ln~L~~~-ql~~LL~yHVlp~~~s~s~f~~~snpv~Tlag~~~~~~~~LnVt~~g--~~V~i~ 181 (278)
|||||+|+||+++..+.++.+..+ .++++|+|||++++++.+++.. ...++|+.|. .|.++..+ +.+.+
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~-~~~~~Tl~g~------~l~v~~~~~~~~i~i- 72 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLN-GGTLPTLAGS------KLRVTRSGDSGTVTV- 72 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhcc-CCccccCCCC------EEEEEEeCCCCeEEE-
Confidence 899999999999987656666544 8999999999999999999986 4678898754 35555544 67777
Q ss_pred eCcccceEeeeecccCCeEEEEeCcccCCC
Q 037512 182 TGITNASLSGTVYTDGQLAIYQVNKVLLPW 211 (278)
Q Consensus 182 tG~~~a~I~~~v~~~~ngvIy~IDkVLlP~ 211 (278)
++++|.......+||+||.||+||+|+
T Consensus 73 ---n~~~v~~~di~~~nGvih~Id~vL~P~ 99 (99)
T smart00554 73 ---NGARIVEADIAATNGVVHVIDRVLLPP 99 (99)
T ss_pred ---cceEEEECCEecCCeEEEEECceeCCC
Confidence 356777655555579999999999985
No 4
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.02 E-value=2.1e-10 Score=117.52 Aligned_cols=134 Identities=16% Similarity=0.234 Sum_probs=99.2
Q ss_pred CCcccHHHHHHHCCChHHHHHHHHhcCchHHHHhhhcCCCCCeEEEecCcHHHhcCCcccccCCCHHHHHhhcccccccC
Q 037512 62 SGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSLNDGEKESLMQFHVLST 141 (278)
Q Consensus 62 ~~~~nI~~iL~k~g~FstF~~LL~~tgl~~~L~~qL~~s~ggiTIFAPtD~AFs~L~~g~Ln~L~~~ql~~LL~yHVlp~ 141 (278)
+...+++++..++. -+++.|++.+-|+.+.|.. ++.+|+|+|+|++|+++.... .+..+.++|+||||+.
T Consensus 371 ~~~~~l~~La~e~~-~st~~rlv~elgll~~L~~-----n~e~t~~lp~n~~fd~~~~~~----~r~l~~qIL~~HII~~ 440 (682)
T KOG1437|consen 371 DSLKNLMSLAREDE-ISTSMRLVAELGLLTALAP-----NDEATLLLPTNNLFDDLTPLE----SRRLAEQILYNHIIPE 440 (682)
T ss_pred chHHHHHHHHhccc-ccHHHHHHHhccceEEEcC-----CCceEEeeehhhhccCCChhh----hHHHHHHHHHHhCcch
Confidence 34677888887765 4899999999998886665 556999999999999976532 2334789999999999
Q ss_pred ccCcccccccCCCcccccCCCCcceEeEEEEecCCeEEE---eeCcccceEeeeecccCCeEEEEeCcccCC
Q 037512 142 YIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNI---STGITNASLSGTVYTDGQLAIYQVNKVLLP 210 (278)
Q Consensus 142 ~~s~s~f~~~snpv~Tlag~~~~~~~~LnVt~~g~~V~i---~tG~~~a~I~~~v~~~~ngvIy~IDkVLlP 210 (278)
+.+.++..+..+.++|+.+. ++...|.+..++.++ .-|.. +.|.......+||+||.||+||.|
T Consensus 441 ~~~~~~~y~~~~~v~t~g~~----~l~~fv~r~~~s~~~t~i~~~~~-~~Ii~aDi~~~nGvvH~id~vl~p 507 (682)
T KOG1437|consen 441 YLTSSSMYNGQTTVRTLGKN----KLLYFVYRHSVSANVTDILIGNE-ACIIEADISVKNGVVHIIDRVLDP 507 (682)
T ss_pred hhhhhhhhcccceeeccCCe----EEEEEEecccccccceeeeccce-eeEEecccceecCceEEeeEEcCc
Confidence 99999999866688888654 344445444332222 22223 666665666678999999999999
No 5
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.92 E-value=3.8e-09 Score=108.39 Aligned_cols=131 Identities=16% Similarity=0.256 Sum_probs=91.0
Q ss_pred ccHHHHHHHCCChHHHHHHHHhcCchHHHHhhhcCCCCCeEEEecCcHHHhcCCcccccCCC-HHHHHhhcccccccCcc
Q 037512 65 TNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSLN-DGEKESLMQFHVLSTYI 143 (278)
Q Consensus 65 ~nI~~iL~k~g~FstF~~LL~~tgl~~~L~~qL~~s~ggiTIFAPtD~AFs~L~~g~Ln~L~-~~ql~~LL~yHVlp~~~ 143 (278)
.++.+.|+++++++.|.++++..++.++++. .+.||+|+|||+||.+...+... +. ...+.++++||+++.-+
T Consensus 508 ~~l~~~l~~d~r~s~~~~~le~~~l~e~l~~-----~~~~t~fvPt~ka~~~~~~~~~~-~~~~~~l~~~l~yH~v~~~~ 581 (682)
T KOG1437|consen 508 VSLMEDLKTDGRISGTVQGLEGVLLPEELTP-----EGNYTLFVPTNKAWQKSTKDEKS-LFHKKALQDFLKYHLVPGQS 581 (682)
T ss_pred ccHHHHHhhccchhhhHHhhhhcCChhhhcc-----CCceEEEeecccccccCCcchhh-cchHHHHHHHHHhcccccee
Confidence 8999999999999999999999999999965 78999999999999998865433 33 57899999999998765
Q ss_pred CcccccccCCCcccccCCCCcceEeEEEEecCCeEEEe----eCccc-ceEee-eecccCCeEEEEeCcccCCCCCC
Q 037512 144 PLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNIS----TGITN-ASLSG-TVYTDGQLAIYQVNKVLLPWNLF 214 (278)
Q Consensus 144 s~s~f~~~snpv~Tlag~~~~~~~~LnVt~~g~~V~i~----tG~~~-a~I~~-~v~~~~ngvIy~IDkVLlP~~if 214 (278)
. +.-.+.+..+. + +.++.. |+.+.+. +|.+| .++.+ ++... ||++|+||+||.|++++
T Consensus 582 ~---ls~~~~~~v~~------~-~k~s~~--~~~~~~~~~~~~~~vn~e~~~~~~i~~~-n~~~h~i~~vl~p~~l~ 645 (682)
T KOG1437|consen 582 R---LSLGSSPYVMI------Q-VKLSLR--GDHLFFSLVNPRGDVNKERLVGIDIMGT-NGVVHVIDLVLKPPDLP 645 (682)
T ss_pred e---eecccccceee------e-eeEEEe--cccEEeeeeccccceeeeeeeccceeee-cceeEEEEEEcccCcch
Confidence 4 22111121111 0 223333 3332222 23222 33333 34444 69999999999998653
No 6
>PF12200 DUF3597: Domain of unknown function (DUF3597); InterPro: IPR022016 This family of proteins is found in bacteria, eukaryotes and viruses. Proteins in this family are typically between 126 and 281 amino acids in length. The function of this domain is unknown. The structure of this domain has been found to contain five helices with a long flexible loop between helices one and two. ; PDB: 2GQB_A.
Probab=54.57 E-value=20 Score=30.25 Aligned_cols=35 Identities=14% Similarity=0.387 Sum_probs=18.8
Q ss_pred CCCcccHHHHHHH----CC---Ch-HHHHHHHHhcCchHHHHh
Q 037512 61 PSGPTNVTKIFEK----AG---HF-SLLIRLLKSTSVADQIEK 95 (278)
Q Consensus 61 ~~~~~nI~~iL~k----~g---~F-stF~~LL~~tgl~~~L~~ 95 (278)
+....||..+|.+ .+ ++ +..++|||-.|++.-|..
T Consensus 45 ~~~~VDV~avL~~~a~~~~~~LnWrtSIVDLlKlLglDSSl~a 87 (127)
T PF12200_consen 45 ALSQVDVAAVLDALAAKNGQKLNWRTSIVDLLKLLGLDSSLAA 87 (127)
T ss_dssp --SSEE-HHHHHHHHHHHSS---TTT-HHHHHHHT----SHHH
T ss_pred CCCcccHHHHHHHHHHhcccccccHHHHHHHHHHcCCCCCHHH
Confidence 3567999999973 12 23 678999999988775543
No 7
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=38.58 E-value=17 Score=20.70 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=6.9
Q ss_pred CccchhHHHHHHH
Q 037512 1 MTKQTFLSFSLVL 13 (278)
Q Consensus 1 m~~~~~~~~~~~~ 13 (278)
|||..++...|++
T Consensus 1 MMk~vIIlvvLLl 13 (19)
T PF13956_consen 1 MMKLVIILVVLLL 13 (19)
T ss_pred CceehHHHHHHHh
Confidence 7886554333333
No 8
>PRK15324 type III secretion system lipoprotein PrgK; Provisional
Probab=25.36 E-value=47 Score=30.98 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCchHHHHhhhcCCCCCeEEEecCcHHHhc
Q 037512 78 SLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSS 116 (278)
Q Consensus 78 stF~~LL~~tgl~~~L~~qL~~s~ggiTIFAPtD~AFs~ 116 (278)
...+..|+..|+.-++.+ +.++|+||.+|.++.-..
T Consensus 33 neIv~~L~~~gI~y~~~~---~gk~G~tI~V~~~d~~~A 68 (252)
T PRK15324 33 NEVIAVLQMHNIEANKID---SGKLGYSITVAEPDFTAA 68 (252)
T ss_pred HHHHHHHHHCCCCeEecc---CCCCceEEEEcHHHHHHH
Confidence 455566666666665543 224589999999987765
No 9
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=24.95 E-value=37 Score=20.80 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=6.6
Q ss_pred CccchhHHHHHH
Q 037512 1 MTKQTFLSFSLV 12 (278)
Q Consensus 1 m~~~~~~~~~~~ 12 (278)
|+|+++|.+..+
T Consensus 6 mmKkil~~l~a~ 17 (25)
T PF08139_consen 6 MMKKILFPLLAL 17 (25)
T ss_pred HHHHHHHHHHHH
Confidence 456666655444
No 10
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=24.76 E-value=1e+02 Score=31.27 Aligned_cols=11 Identities=45% Similarity=1.102 Sum_probs=4.3
Q ss_pred CCCCCCCCCCC
Q 037512 41 PSPPSPPAPLV 51 (278)
Q Consensus 41 ~~~~~~~~~~~ 51 (278)
+..||||+|+|
T Consensus 233 ~g~PPPPPP~P 243 (480)
T KOG2675|consen 233 PGAPPPPPPAP 243 (480)
T ss_pred CCCCCCCCCCC
Confidence 33344444433
No 11
>TIGR00247 conserved hypothetical protein, YceG family. This uncharacterized protein family, found in three of four microbial genomes, virtually always once per genome, includes YceG from Escherichia coli. This protein is encoded next to PabC, 4-amino-4-deoxychorismate lyase, in E. coli and numerous other proteobacteria, but that proximity is not conserved in other lineages. Numerous members of this family have been misannotated as aminodeoxychorismate lyase, apparently because of promiximty to PabC.
Probab=20.94 E-value=1.6e+02 Score=28.34 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=21.8
Q ss_pred CCCCCCcccHHHHHHHCC---ChHHHHHHHHhcCchH
Q 037512 58 GPAPSGPTNVTKIFEKAG---HFSLLIRLLKSTSVAD 91 (278)
Q Consensus 58 ~~~~~~~~nI~~iL~k~g---~FstF~~LL~~tgl~~ 91 (278)
++.......|.+.|++.| .=..|..+++..+...
T Consensus 44 Ip~G~s~~~Ia~~L~~~GvI~s~~~F~~~ak~~~~~~ 80 (342)
T TIGR00247 44 IEKGTGVSKIAKELKKQKLIKSEKLLQYLLKIKGSLK 80 (342)
T ss_pred ECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHhcCCcC
Confidence 345677789999999876 2245666665555433
No 12
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=20.22 E-value=78 Score=27.78 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=24.4
Q ss_pred ceEeEEEEecCCeEEEeeCcccceEeeeecccCCeEEEEeCc
Q 037512 165 YAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNK 206 (278)
Q Consensus 165 ~~~~LnVt~~g~~V~i~tG~~~a~I~~~v~~~~ngvIy~IDk 206 (278)
+.|.|||..-||+-.|+.=|. +-|..-.+.||+||.
T Consensus 60 g~f~LnvwDiGGqr~IRpyWs------NYyenvd~lIyVIDS 95 (185)
T KOG0074|consen 60 GTFHLNVWDIGGQRGIRPYWS------NYYENVDGLIYVIDS 95 (185)
T ss_pred CcEEEEEEecCCccccchhhh------hhhhccceEEEEEeC
Confidence 458899998888765543232 345555799999984
Done!