BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037514
(636 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 133/541 (24%), Positives = 220/541 (40%), Gaps = 94/541 (17%)
Query: 96 PNIGNLSNLQYLDLS--------------YQNLKEYQITKELWVSDLIWLPDLSSSRYLH 141
P +G+ S LQ+LD+S LK I+ +V + LP L S +YL
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP-LKSLQYLS 272
Query: 142 LEGMKLS-KVTNWLQVVNELPSLVELHLSNCQL----------------------NFPQS 178
L K + ++ ++L + +L L LS NF
Sbjct: 273 LAENKFTGEIPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 179 LP---FLNFTSLSILELSYDNFNSQIPQWLFNIS-TLVTLNLRSSQLSGSI-PKFPPGKM 233
LP L L +L+LS++ F+ ++P+ L N+S +L+TL+L S+ SG I P
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 234 CNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLY 293
L+ L L NGF+G + TLS C+ L ++GTI ++G L++L L L+
Sbjct: 391 NTLQELYLQNNGFTG---KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 294 RNSWKGIITENHFQXXXXXXXXXXXXXXXXXVFTMRSDWIPPFSLRQMAINDCQLGSAFP 353
N +G I + ++ + ND L P
Sbjct: 448 LNMLEGEIPQELM-------------------------YVKTLETLILDFND--LTGEIP 480
Query: 354 SWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLY 413
S L ++ ++LSN ++ IP W + + L+++ LSNN F G I + L SL
Sbjct: 481 SGLSNCTNLNWISLSNNRLTGEIPKWIGRL--ENLAILKLSNNSFSGNIPAELGDCRSLI 538
Query: 414 WLRLGGNNLSGELSTSL-PDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG 472
WL L N +G + ++ ++ A I G R++ + + M C+ + + I
Sbjct: 539 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 598
Query: 473 EIKELTNAFSACNVS----------------TLETLDLASNKLGGNLPDXXXXXXXXXXX 516
E + + CN++ ++ LD++ N L G +P
Sbjct: 599 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 658
Query: 517 XXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVIT 576
GS+P +G+L L L LS N + I + + L+ +DL N+ G I
Sbjct: 659 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Query: 577 E 577
E
Sbjct: 719 E 719
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 34/220 (15%)
Query: 387 KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPD-CSRLTALDIGGNR 445
+L ++++S+N+F G I L SL +L L N +GE+ L C LT LD+ GN
Sbjct: 245 ELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 302
Query: 446 FL-------------------------QLPSTSMGNLCNLHSLDISYNHITGEIKELTNA 480
F +LP ++ + L LD+S+N +GE+ E
Sbjct: 303 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 362
Query: 481 FSACNVSTLETLDLASNKLGGN-LPDXXXX-XXXXXXXXXXXXSFLGSLPTSIGNLSHLR 538
SA +L TLDL+SN G LP+ F G +P ++ N S L
Sbjct: 363 LSA----SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 418
Query: 539 ALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEK 578
+L+LSFN +S I ++G LS+ L L+ N EG I ++
Sbjct: 419 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 123/303 (40%), Gaps = 37/303 (12%)
Query: 175 FPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMC 234
PQ L ++ +L L L +++ +IP L N + L ++L +++L+G IPK+ G++
Sbjct: 455 IPQELMYV--KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLE 511
Query: 235 NLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYR 294
NL L L+ N FSG L C + L T NGTI + + + +A N
Sbjct: 512 NLAILKLSNNSFSG---NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 568
Query: 295 NSWKGIITENHFQXXXXXXXXXXXXXXXXXVFTMRSDWIPPFSLRQMAINDCQLGSAFPS 354
I + + +RS+ + S R N C + S
Sbjct: 569 GKRYVYIKNDGMKKECHGAGNLLEFQG------IRSEQLNRLSTR----NPCNITS---- 614
Query: 355 WLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYW 414
+ T N + +D+S N G I + S+P L+
Sbjct: 615 --RVYGGHTSPTFDNNG---------------SMMFLDMSYNMLSGYIPKEIGSMPYLFI 657
Query: 415 LRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEI 474
L LG N++SG + + D L LD+ N+ +M L L +D+S N+++G I
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 475 KEL 477
E+
Sbjct: 718 PEM 720
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 97/242 (40%), Gaps = 52/242 (21%)
Query: 382 GVISQKLSVIDLSNNKFFGG-----ILSSLCSLPSLYWLRLGGNNLSGEL---------- 426
G+ L V+DLS N G +LS C L L + GN +SG++
Sbjct: 144 GLKLNSLEVLDLSANSISGANVVGWVLSDGCG--ELKHLAISGNKISGDVDVSRCVNLEF 201
Query: 427 --------STSLP---DCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIK 475
ST +P DCS L LDI GN+ S ++ L L+IS N G I
Sbjct: 202 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Query: 476 EL-----------TNAFS---------ACNVSTLETLDLASNKLGGNLPDXXXXXXXXXX 515
L N F+ AC+ TL LDL+ N G +P
Sbjct: 262 PLPLKSLQYLSLAENKFTGEIPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 516 XXXXXXSFLGSLP-TSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYM-LDLYGNSWEG 573
+F G LP ++ + L+ L LSFN S + E++ LS + LDL N++ G
Sbjct: 320 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 574 VI 575
I
Sbjct: 380 PI 381
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 92 GMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWV-SDLIWLPDLSSSRYLHL--EGMK-- 146
G +P +G+ +L +LDL+ NL I ++ S I ++ RY+++ +GMK
Sbjct: 525 GNIPAELGDCRSLIWLDLN-TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 583
Query: 147 LSKVTNWLQV-------VNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS 199
N L+ +N L + ++++ S F N S+ L++SY+ +
Sbjct: 584 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 643
Query: 200 QIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLS 258
IP+ + ++ L LNL + +SGSIP G + L LDL+ N G Q + L+
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLDGRIPQAMSALT 701
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 82/374 (21%), Positives = 133/374 (35%), Gaps = 67/374 (17%)
Query: 92 GMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDL----IWLPDLSSSRYLHLEGMKL 147
G +PP + N S L L LS+ L + +S L +WL L + E M +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE--IPQELMYV 462
Query: 148 SKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFN 207
+ + N+L + LSNC T+L+ + LS + +IP+W+
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNC-------------TNLNWISLSNNRLTGEIPKWIGR 509
Query: 208 ISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLET 267
+ L L L ++ SG+IP L C +
Sbjct: 510 LENLAILKLSNNSFSGNIP----------------------------AELGDCRSLIWLD 541
Query: 268 LETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQXXXXXXXXXXXXXXXXXVFT 327
L T NGTI + + + +A N I + +
Sbjct: 542 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ------G 595
Query: 328 MRSDWIPPFSLRQMAINDCQL------GSAFPSWLKTQASVFKLTLSNAAISDTIPDWFW 381
+RS+ + S R N C + G P++ S+ L +S +S IP
Sbjct: 596 IRSEQLNRLSTR----NPCNITSRVYGGHTSPTF-DNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 382 GVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDI 441
+ L +++L +N G I + L L L L N L G + ++ + LT +D+
Sbjct: 651 SM--PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 442 GGNRFLQLPSTSMG 455
N L P MG
Sbjct: 709 SNNN-LSGPIPEMG 721
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 132/541 (24%), Positives = 220/541 (40%), Gaps = 94/541 (17%)
Query: 96 PNIGNLSNLQYLDLS--------------YQNLKEYQITKELWVSDLIWLPDLSSSRYLH 141
P +G+ S LQ+LD+S LK I+ +V + LP L S +YL
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP-LKSLQYLS 275
Query: 142 LEGMKLS-KVTNWLQVVNELPSLVELHLSNCQL----------------------NFPQS 178
L K + ++ ++L + +L L LS NF
Sbjct: 276 LAENKFTGEIPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 179 LP---FLNFTSLSILELSYDNFNSQIPQWLFNIS-TLVTLNLRSSQLSGSI-PKFPPGKM 233
LP L L +L+LS++ F+ ++P+ L N+S +L+TL+L S+ SG I P
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 234 CNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLY 293
L+ L L NGF+G + TLS C+ L ++GTI ++G L++L L L+
Sbjct: 394 NTLQELYLQNNGFTG---KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 294 RNSWKGIITENHFQXXXXXXXXXXXXXXXXXVFTMRSDWIPPFSLRQMAINDCQLGSAFP 353
N +G I + +L + ++ L P
Sbjct: 451 LNMLEGEIPQELMYVK---------------------------TLETLILDFNDLTGEIP 483
Query: 354 SWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLY 413
S L ++ ++LSN ++ IP W + + L+++ LSNN F G I + L SL
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRL--ENLAILKLSNNSFSGNIPAELGDCRSLI 541
Query: 414 WLRLGGNNLSGELSTSL-PDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG 472
WL L N +G + ++ ++ A I G R++ + + M C+ + + I
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601
Query: 473 EIKELTNAFSACNVS----------------TLETLDLASNKLGGNLPDXXXXXXXXXXX 516
E + + CN++ ++ LD++ N L G +P
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661
Query: 517 XXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVIT 576
GS+P +G+L L L LS N + I + + L+ +DL N+ G I
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Query: 577 E 577
E
Sbjct: 722 E 722
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 34/220 (15%)
Query: 387 KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPD-CSRLTALDIGGNR 445
+L ++++S+N+F G I L SL +L L N +GE+ L C LT LD+ GN
Sbjct: 248 ELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305
Query: 446 FL-------------------------QLPSTSMGNLCNLHSLDISYNHITGEIKELTNA 480
F +LP ++ + L LD+S+N +GE+ E
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365
Query: 481 FSACNVSTLETLDLASNKLGGN-LPDXXXX-XXXXXXXXXXXXSFLGSLPTSIGNLSHLR 538
SA +L TLDL+SN G LP+ F G +P ++ N S L
Sbjct: 366 LSA----SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421
Query: 539 ALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEK 578
+L+LSFN +S I ++G LS+ L L+ N EG I ++
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 123/303 (40%), Gaps = 37/303 (12%)
Query: 175 FPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMC 234
PQ L ++ +L L L +++ +IP L N + L ++L +++L+G IPK+ G++
Sbjct: 458 IPQELMYV--KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLE 514
Query: 235 NLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYR 294
NL L L+ N FSG L C + L T NGTI + + + +A N
Sbjct: 515 NLAILKLSNNSFSG---NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571
Query: 295 NSWKGIITENHFQXXXXXXXXXXXXXXXXXVFTMRSDWIPPFSLRQMAINDCQLGSAFPS 354
I + + +RS+ + S R N C + S
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQG------IRSEQLNRLSTR----NPCNITS---- 617
Query: 355 WLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYW 414
+ T N + +D+S N G I + S+P L+
Sbjct: 618 --RVYGGHTSPTFDNNG---------------SMMFLDMSYNMLSGYIPKEIGSMPYLFI 660
Query: 415 LRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEI 474
L LG N++SG + + D L LD+ N+ +M L L +D+S N+++G I
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 475 KEL 477
E+
Sbjct: 721 PEM 723
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 97/242 (40%), Gaps = 52/242 (21%)
Query: 382 GVISQKLSVIDLSNNKFFGG-----ILSSLCSLPSLYWLRLGGNNLSGEL---------- 426
G+ L V+DLS N G +LS C L L + GN +SG++
Sbjct: 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCG--ELKHLAISGNKISGDVDVSRCVNLEF 204
Query: 427 --------STSLP---DCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIK 475
ST +P DCS L LDI GN+ S ++ L L+IS N G I
Sbjct: 205 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Query: 476 EL-----------TNAFS---------ACNVSTLETLDLASNKLGGNLPDXXXXXXXXXX 515
L N F+ AC+ TL LDL+ N G +P
Sbjct: 265 PLPLKSLQYLSLAENKFTGEIPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 516 XXXXXXSFLGSLP-TSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYM-LDLYGNSWEG 573
+F G LP ++ + L+ L LSFN S + E++ LS + LDL N++ G
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 574 VI 575
I
Sbjct: 383 PI 384
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 92 GMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWV-SDLIWLPDLSSSRYLHL--EGMK-- 146
G +P +G+ +L +LDL+ NL I ++ S I ++ RY+++ +GMK
Sbjct: 528 GNIPAELGDCRSLIWLDLN-TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586
Query: 147 LSKVTNWLQV-------VNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS 199
N L+ +N L + ++++ S F N S+ L++SY+ +
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646
Query: 200 QIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLS 258
IP+ + ++ L LNL + +SGSIP G + L LDL+ N G Q + L+
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLDGRIPQAMSALT 704
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 82/374 (21%), Positives = 133/374 (35%), Gaps = 67/374 (17%)
Query: 92 GMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDL----IWLPDLSSSRYLHLEGMKL 147
G +PP + N S L L LS+ L + +S L +WL L + E M +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE--IPQELMYV 465
Query: 148 SKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFN 207
+ + N+L + LSNC T+L+ + LS + +IP+W+
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNC-------------TNLNWISLSNNRLTGEIPKWIGR 512
Query: 208 ISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLET 267
+ L L L ++ SG+IP L C +
Sbjct: 513 LENLAILKLSNNSFSGNIP----------------------------AELGDCRSLIWLD 544
Query: 268 LETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQXXXXXXXXXXXXXXXXXVFT 327
L T NGTI + + + +A N I + +
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG------ 598
Query: 328 MRSDWIPPFSLRQMAINDCQL------GSAFPSWLKTQASVFKLTLSNAAISDTIPDWFW 381
+RS+ + S R N C + G P++ S+ L +S +S IP
Sbjct: 599 IRSEQLNRLSTR----NPCNITSRVYGGHTSPTF-DNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 382 GVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDI 441
+ L +++L +N G I + L L L L N L G + ++ + LT +D+
Sbjct: 654 SM--PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 442 GGNRFLQLPSTSMG 455
N L P MG
Sbjct: 712 SNNN-LSGPIPEMG 724
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 10/203 (4%)
Query: 352 FPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPS 411
P + + L +++ +S IPD+ + + L +D S N G + S+ SLP+
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--KTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 412 LYWLRLGGNNLSGELSTSLPDCSRL-TALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHI 470
L + GN +SG + S S+L T++ I NR + NL NL +D+S N +
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209
Query: 471 TGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTS 530
G+ L + + + LA N L +L G+LP
Sbjct: 210 EGDASVLFGS-----DKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 531 IGNLSHLRALYLSFNVMSRIISE 553
+ L L +L +SFN + I +
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 32/174 (18%)
Query: 402 ILSSLCSLPSLYWLRLGG-NNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNL 460
I SSL +LP L +L +GG NNL G + P ++LT L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIP---PAIAKLT---------------------QL 103
Query: 461 HSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDXXXXXXXXXXXXXXX 520
H L I++ +++G I + + + TL TLD + N L G LP
Sbjct: 104 HYLYITHTNVSGAIPDFLS-----QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158
Query: 521 XSFLGSLPTSIGNLSHL-RALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEG 573
G++P S G+ S L ++ +S N ++ I L+ ++ DL N EG
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV-DLSRNMLEG 211
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 111/297 (37%), Gaps = 77/297 (25%)
Query: 140 LHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQ-LNFPQSLPFLNFTSLSILELSYDNFN 198
L L G+ L K + LP L L++ L P T L L +++ N +
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 199 SQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLS 258
IP +L I TLVTL+ + LSG++P ++S
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPP----------------------------SIS 146
Query: 259 GCNNSTLETLETQRMNGTISENIGQLAEL-VALNLYRNSWKGIITENHFQXXXXXXXXXX 317
N T + R++G I ++ G ++L ++ + RN G I
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP--------------- 191
Query: 318 XXXXXXXVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVF--------KLTLSN 369
P F+ +A D + L+ ASV K+ L+
Sbjct: 192 ----------------PTFANLNLAFVDLSR-----NMLEGDASVLFGSDKNTQKIHLAK 230
Query: 370 AAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGEL 426
+++ D +S+ L+ +DL NN+ +G + L L L+ L + NNL GE+
Sbjct: 231 NSLAF---DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 25/152 (16%)
Query: 348 LGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLC 407
L P + + ++ +T IS IPD +G S+ + + +S N+ G I +
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFA 195
Query: 408 SLPSLYWLRLGGNNLSGELST-----------------------SLPDCSRLTALDIGGN 444
+L +L ++ L N L G+ S + L LD+ N
Sbjct: 196 NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254
Query: 445 RFLQLPSTSMGNLCNLHSLDISYNHITGEIKE 476
R + L LHSL++S+N++ GEI +
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 396 NKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMG 455
N G I ++ L L++L + N+SG + L L LD N S+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 456 NLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLP 504
+L NL + N I+G I + +FS ++ ++ N+L G +P
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFS----KLFTSMTISRNRLTGKIP 191
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 95/217 (43%), Gaps = 26/217 (11%)
Query: 92 GMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPD-LSSSRYLHLEGMKLSKV 150
G +PP I L+ L YL +++ N+ +PD LS + L + +
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSG-------------AIPDFLSQIKTLVTLDFSYNAL 137
Query: 151 TNWL-QVVNELPSLVELHLSNCQLNFPQSLPFLNFTSL-SILELSYDNFNSQIPQWLFNI 208
+ L ++ LP+LV + +++ + +F+ L + + +S + +IP N+
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197
Query: 209 STLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAIN--GFSGEKEQFIQTLSGCNNSTLE 266
+ L ++L + L G G N +++ LA N F K + L+G +
Sbjct: 198 N-LAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD----- 250
Query: 267 TLETQRMNGTISENIGQLAELVALNLYRNSWKGIITE 303
L R+ GT+ + + QL L +LN+ N+ G I +
Sbjct: 251 -LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 27/220 (12%)
Query: 360 ASVFKLTLSNAAISDTIPDWFWGVISQKLSVID--LSNNKFFGGILSSLCSLPSLYWLRL 417
A K L +++D V +L+ ID ++NN + + LP++ +L L
Sbjct: 19 AETIKANLKKKSVTD-------AVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVRYLAL 70
Query: 418 GGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT----GE 473
GGN L ++L + + LT L + GN+ LP+ L NL L + N + G
Sbjct: 71 GGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 474 IKELTNAFSACNVSTLETLDLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSI-G 532
+LTN L L+LA N+L +LP + L SLP +
Sbjct: 129 FDKLTN---------LTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178
Query: 533 NLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWE 572
L+ L+ L L N + + +L+ + L+ N W+
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 125 VSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLP---F 181
V + +LP++ RYL L G KL ++ + EL +L L L+ QL QSLP F
Sbjct: 56 VQGIQYLPNV---RYLALGGNKLHDIS----ALKELTNLTYLILTGNQL---QSLPNGVF 105
Query: 182 LNFTSLSILELSYDNFNSQIPQWLFN-ISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLD 240
T+L L L + S +P +F+ ++ L LNL +QL S+PK K+ NL LD
Sbjct: 106 DKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELD 163
Query: 241 LAINGFSGEKEQFIQTLS 258
L+ N E L+
Sbjct: 164 LSYNQLQSLPEGVFDKLT 181
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 88/229 (38%), Gaps = 27/229 (11%)
Query: 366 TLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGE 425
T + D P F G+ + I+L + FF ++ L L L +LS E
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-E 292
Query: 426 LSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACN 485
L + L S L L + N+F L S N +L L I N T ++ T N
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN--TKRLELGTGCLE--N 348
Query: 486 VSTLETLDLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFN 545
+ L LDL+ + + + + NLSHL++L LS+N
Sbjct: 349 LENLRELDLSHDDIETS----------------------DCCNLQLRNLSHLQSLNLSYN 386
Query: 546 VMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSS 594
+ +E + + +LDL + + F+NL L L +S S
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 11/139 (7%)
Query: 364 KLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLS 423
+L L+ +S+ +P G+ + K V LS NKF S + PSL L + GN
Sbjct: 282 ELDLTATHLSE-LPSGLVGLSTLKKLV--LSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 424 GELST-SLPDCSRLTALDIGGNRFL--QLPSTSMGNLCNLHSLDISYNHITGEIKELTNA 480
EL T L + L LD+ + + + NL +L SL++SYN + T A
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE---PLSLKTEA 395
Query: 481 FSACNVSTLETLDLASNKL 499
F C LE LDLA +L
Sbjct: 396 FKEC--PQLELLDLAFTRL 412
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 67/138 (48%), Gaps = 16/138 (11%)
Query: 125 VSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLP---F 181
V + +LP++ RYL L G KL ++ + EL +L L L+ QL QSLP F
Sbjct: 56 VQGIQYLPNV---RYLALGGNKLHDIS----ALKELTNLTYLILTGNQL---QSLPNGVF 105
Query: 182 LNFTSLSILELSYDNFNSQIPQWLFN-ISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLD 240
T+L L L + S +P +F+ ++ L L L +QL S+PK K+ NL RLD
Sbjct: 106 DKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLD 163
Query: 241 LAINGFSGEKEQFIQTLS 258
L N E L+
Sbjct: 164 LDNNQLQSLPEGVFDKLT 181
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 27/225 (12%)
Query: 360 ASVFKLTLSNAAISDTIPDWFWGVISQKLSVID--LSNNKFFGGILSSLCSLPSLYWLRL 417
A K L +++D V +L+ ID ++NN + + LP++ +L L
Sbjct: 19 AETIKANLKKKSVTD-------AVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVRYLAL 70
Query: 418 GGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHI----TGE 473
GGN L ++L + + LT L + GN+ LP+ L NL L + N + G
Sbjct: 71 GGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 474 IKELTNAFSACNVSTLETLDLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSI-G 532
+LTN L L L N+L LP + L SLP +
Sbjct: 129 FDKLTN---------LTYLYLYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFD 178
Query: 533 NLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITE 577
L+ L+ L L+ N + + +L+ + L N W+ ++
Sbjct: 179 KLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSD 223
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%)
Query: 380 FWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTAL 439
F G+ + + DLS +K F + S L L L N ++ + + L L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 440 DIGGNRFLQLPSTSMGNLCNLHSLDISYNHI 470
++ N + S NL L LD+SYNHI
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 101 LSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNEL 160
L NLQ LDLS+ +++ L + +L L L+ S H E + L Q E
Sbjct: 346 LGNLQTLDLSHNDIEASDCCS-LQLKNLSHLQTLNLS---HNEPLGLQS-----QAFKEC 396
Query: 161 P--SLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRS 218
P L++L + +N PQS PF N L +L L+Y ++ L + L LNL+
Sbjct: 397 PQLELLDLAFTRLHINAPQS-PFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKG 455
Query: 219 SQL-SGSIPK 227
+ G+I K
Sbjct: 456 NHFQDGTITK 465
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 86/233 (36%), Gaps = 49/233 (21%)
Query: 392 DLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPS 451
D+ + +L LC + S+ L L + S ST+ ++L LD+ LPS
Sbjct: 234 DIDDEDISSAMLKGLCEM-SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPS 292
Query: 452 TSMGNLCNLHSLDISYNH-------------------ITGEIKELTNAFSAC-NVSTLET 491
M L L L +S NH I G +K+L + L+T
Sbjct: 293 -GMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQT 351
Query: 492 LDLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRII 551
LDL+ N + + + NLSHL+ L LS N +
Sbjct: 352 LDLSHNDIEAS----------------------DCCSLQLKNLSHLQTLNLSHNEPLGLQ 389
Query: 552 SENIGQLSEPYMLD-----LYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLV 599
S+ + + +LD L+ N+ + HF + L Y + +SN L+
Sbjct: 390 SQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLL 442
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 44/179 (24%)
Query: 94 LPPNIGNLSNLQYLDLSYQNLKEY-QITKELWVSDLIWLP---------------DLSSS 137
+ N L L++LD + NLK+ + + L + +LI+L LSS
Sbjct: 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152
Query: 138 RYLHLEGMKLSKVTNWL-QVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDN 196
L + G + N+L + EL +L L LS CQL F + +SL +L +S++N
Sbjct: 153 EVLKMAGNSFQE--NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Query: 197 FNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQ 255
F F++ T FP + +L+ LD ++N K+Q +Q
Sbjct: 211 F--------FSLDT-----------------FPYKCLNSLQVLDYSLNHIMTSKKQELQ 244
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 92/238 (38%), Gaps = 16/238 (6%)
Query: 268 LETQRMNGTISENIGQLAELVALNLYRN--SWKGIITENHFQXXXXXXXXXXXXXXXXXV 325
LE+ ++ +L +L L+L N S+KG +++ F V
Sbjct: 35 LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF----GTTSLKYLDLSFNGV 90
Query: 326 FTMRSDWIPPFSLRQMAINDCQLG--SAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGV 383
TM S+++ L + L S F +L + ++ L +S+ F G+
Sbjct: 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY-LDISHTHTRVAFNGIFNGL 149
Query: 384 ISQKLSVIDLSNNKFFGGILSSL-CSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIG 442
S L V+ ++ N F L + L +L +L L L T+ S L L++
Sbjct: 150 SS--LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 443 GNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG 500
N F L + L +L LD S NHI K+ F S+L L+L N
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP----SSLAFLNLTQNDFA 261
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 17/103 (16%)
Query: 98 IGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVV 157
+ L+NLQYL + VSDL L +LS L + K+S ++
Sbjct: 147 LAGLTNLQYLSIG-----------NAQVSDLTPLANLSKLTTLKADDNKISDISPLA--- 192
Query: 158 NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQ 200
LP+L+E+HL N Q++ P N ++L I+ L+ +Q
Sbjct: 193 -SLPNLIEVHLKNNQIS--DVSPLANTSNLFIVTLTNQTITNQ 232
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 97 NIGNLSNLQYLDLSYQNLKEY-QITKELWVSDLIWLP---------------DLSSSRYL 140
N L L++LD + NLK+ + + L + +LI+L LSS L
Sbjct: 415 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 474
Query: 141 HLEGMKLSKVTNWL-QVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS 199
+ G + N+L + EL +L L LS CQL F + +SL +L +S++NF
Sbjct: 475 KMAGNSFQE--NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-- 530
Query: 200 QIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQ 255
F++ T FP + +L+ LD ++N K+Q +Q
Sbjct: 531 ------FSLDT-----------------FPYKCLNSLQVLDYSLNHIMTSKKQELQ 563
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 10/179 (5%)
Query: 325 VFTMRSDWIPPFSLRQMAINDCQLG--SAFPSWLKTQASVFKLTLSNAAISDTIPDWFWG 382
V TM S+++ L + L S F +L + ++ L +S+ F G
Sbjct: 409 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY-LDISHTHTRVAFNGIFNG 467
Query: 383 VISQKLSVIDLSNNKFFGGILSSL-CSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDI 441
+ S L V+ ++ N F L + L +L +L L L T+ S L L++
Sbjct: 468 LSS--LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525
Query: 442 GGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG 500
N F L + L +L LD S NHI K+ F S+L L+L N
Sbjct: 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP----SSLAFLNLTQNDFA 580
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 23/123 (18%)
Query: 479 NAFSACNVSTLETLDLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLR 538
NAFS ++ +LE LDL+ N L SF G S L+
Sbjct: 363 NAFSEVDLPSLEFLDLSRNGL----------------------SFKGCCSQSDFGTISLK 400
Query: 539 ALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSL 598
L LSFN + + S +G L + LD ++ + + F +L L YL IS +++ +
Sbjct: 401 YLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459
Query: 599 VFN 601
FN
Sbjct: 460 AFN 462
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 44/179 (24%)
Query: 94 LPPNIGNLSNLQYLDLSYQNLKEY-QITKELWVSDLIWLP---------------DLSSS 137
+ N L L++LD + NLK+ + + L + +LI+L LSS
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 138 RYLHLEGMKLSKVTNWL-QVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDN 196
L + G + N+L + EL +L L LS CQL F + +SL +L +S++N
Sbjct: 448 EVLKMAGNSFQE--NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
Query: 197 FNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQ 255
F S+ FP + +L+ LD ++N K+Q +Q
Sbjct: 506 F-------------------------FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 23/123 (18%)
Query: 479 NAFSACNVSTLETLDLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLR 538
NAFS ++ +LE LDL+ N L SF G S + L+
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGL----------------------SFKGCCSQSDFGTTSLK 376
Query: 539 ALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSL 598
L LSFN + + S +G L + LD ++ + + F +L L YL IS +++ +
Sbjct: 377 YLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 599 VFN 601
FN
Sbjct: 436 AFN 438
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 10/179 (5%)
Query: 325 VFTMRSDWIPPFSLRQMAINDCQLG--SAFPSWLKTQASVFKLTLSNAAISDTIPDWFWG 382
V TM S+++ L + L S F +L + ++ L +S+ F G
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY-LDISHTHTRVAFNGIFNG 443
Query: 383 VISQKLSVIDLSNNKFFGGILSSL-CSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDI 441
+ S L V+ ++ N F L + L +L +L L L T+ S L L++
Sbjct: 444 LSS--LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 442 GGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG 500
N F L + L +L LD S NHI K+ F S+L L+L N
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP----SSLAFLNLTQNDFA 556
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 385 SQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDC-SRLTALDIGG 443
+Q L + D K G+ SL +L LY LG N L G L + D ++LT LD+G
Sbjct: 42 AQILYLHDNQITKLEPGVFDSLINLKELY---LGSNQL-GALPVGVFDSLTQLTVLDLGT 97
Query: 444 NRFLQLPSTSMGNLCNLHSLDISYNHIT 471
N+ LPS L +L L + N +T
Sbjct: 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT 125
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 387 KLSVIDLSNNKFFG---GILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG 443
+L + L+NN+ G+ L L LY LGGN L S ++L L +
Sbjct: 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLY---LGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 444 NRFLQLPSTSMGNLCNLHSLDISYNHI 470
N+ +P+ + L NL +L +S N +
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 387 KLSVIDLSNNKFFG---GILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG 443
+L + L+NN+ G+ L L LY LGGN L S ++L L +
Sbjct: 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLY---LGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 444 NRFLQLPSTSMGNLCNLHSLDISYNHI 470
N+ +P+ + L NL +L +S N +
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 530 SIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYL 589
S N++ L L LS+N + I L +L L+GN V+ E F +LS L +L
Sbjct: 73 SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHL 131
Query: 590 TISSSNSSLVFNIR--HDWI 607
I ++ N++ DW+
Sbjct: 132 AIGANPLYCDCNMQWLSDWV 151
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 409 LPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYN 468
+ L ++R+ N++ + LP LT L + GN+ ++ + S+ L NL L +S+N
Sbjct: 170 MKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 469 HITGEIKELTNAFSACNVSTLETLDLASNKL 499
I+ + S N L L L +NKL
Sbjct: 227 SISA-----VDNGSLANTPHLRELHLNNNKL 252
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 386 QKLSVIDLSNNKFF--------GGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLT 437
+KL ++DL +N GG + L L L+ L L N D L
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563
Query: 438 ALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKEL 477
+D+G N LP++ N +L SL++ N IT K++
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 341 MAINDCQLGSAFPSWLKTQ---ASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK 397
+ +N+ QLG + L + S+ L+LSN+ +S T F G+ L+++DLS N
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259
Query: 398 FFGGILSSLCSLPSLYWLRLGGNNLSGELSTSL 430
S LP L + L NN+ S SL
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 409 LPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYN 468
+ L ++R+ N++ + LP LT L + GN+ ++ + S+ L NL L +S+N
Sbjct: 170 MKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 469 HITGEIKELTNAFSACNVSTLETLDLASNKL 499
I+ + S N L L L +NKL
Sbjct: 227 SISA-----VDNGSLANTPHLRELHLNNNKL 252
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 386 QKLSVIDLSNNKFF--------GGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLT 437
+KL ++DL +N GG + L L L+ L L N D L
Sbjct: 509 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 568
Query: 438 ALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKEL 477
+D+G N LP++ N +L SL++ N IT K++
Sbjct: 569 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 608
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 341 MAINDCQLGSAFPSWLKTQ---ASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK 397
+ +N+ QLG + L + S+ L+LSN+ +S T F G+ L+++DLS N
Sbjct: 205 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 264
Query: 398 FFGGILSSLCSLPSLYWLRLGGNNLSGELSTSL 430
S LP L + L NN+ S SL
Sbjct: 265 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 297
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 387 KLSVIDLSNNKFFGGILSSLCS-LPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNR 445
+L+++D N + LC LP L L L N LS + C+ LT LD+ N
Sbjct: 50 QLAILDAGFNSI-SKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNS 108
Query: 446 FLQLPSTSMGNLCNLHSLDISYNHITG 472
++ S N NL LD+S+N ++
Sbjct: 109 IHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 341 MAINDCQLGSAFPS---WLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK 397
+ +N+ QL W + S+ L+L+N + T F G+ L+ +DLS N
Sbjct: 200 LLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNN 259
Query: 398 FFGGILSSLCSLPSLYWLRLGGNNL 422
S LPSL +L L NN+
Sbjct: 260 LHDVGNGSFSYLPSLRYLSLEYNNI 284
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 386 QKLSVIDLSNNKFF--------GGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLT 437
+KL ++DL +N GG + L L L+ L L N D L
Sbjct: 514 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 573
Query: 438 ALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKEL 477
+D+G N LP++ N +L SL++ N IT K++
Sbjct: 574 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 613
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 343 INDCQLGSAFPSWLKTQ---ASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFF 399
+N+ QLG + L + S+ L+LSN+ +S T F G+ L+++DLS N
Sbjct: 212 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 271
Query: 400 GGILSSLCSLPSLYWLRLGGNNLSGELSTSL 430
S LP L + L NN+ S SL
Sbjct: 272 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 302
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 51/216 (23%)
Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
L+ I+ SNN+ ++ L +L L + + N ++ T L + + LT L + N+
Sbjct: 65 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQIT 120
Query: 448 QLPSTSMGNLCNLHSLDISYNHITGEIKELTN-------AFSA---------CNVSTLET 491
+ + NL NL+ L++S N I+ +I L+ +FS+ N++TLE
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFSSNQVTDLKPLANLTTLER 177
Query: 492 LDLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRII 551
LD++SNK+ S + + L++L +L + N +S I
Sbjct: 178 LDISSNKV--------------------------SDISVLAKLTNLESLIATNNQISDIT 211
Query: 552 SENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLD 587
+G L+ L L GN + + T NL+ LD
Sbjct: 212 P--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 245
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 51/216 (23%)
Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
L+ I+ SNN+ ++ L +L L + + N ++ T L + + LT L + N+
Sbjct: 65 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQIT 120
Query: 448 QLPSTSMGNLCNLHSLDISYNHITGEIKELTN-------AFSA---------CNVSTLET 491
+ + NL NL+ L++S N I+ +I L+ +FS+ N++TLE
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFSSNQVTDLKPLANLTTLER 177
Query: 492 LDLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRII 551
LD++SNK+ S + + L++L +L + N +S I
Sbjct: 178 LDISSNKV--------------------------SDISVLAKLTNLESLIATNNQISDIT 211
Query: 552 SENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLD 587
+G L+ L L GN + + T NL+ LD
Sbjct: 212 P--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 245
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 24/101 (23%)
Query: 390 VIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQL 449
+DLSN + F I +++ L L L GN+L+ EL + + S L LD+ NR L
Sbjct: 228 ALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL 285
Query: 450 PST----------------------SMGNLCNLHSLDISYN 468
P+ GNLCNL L + N
Sbjct: 286 PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 436 LTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAF 481
LT L + GN +LP+ + NL NL LD+S+N +T EL + F
Sbjct: 249 LTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSLPAELGSCF 293
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 91/215 (42%), Gaps = 49/215 (22%)
Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
L+ I+ SNN+ ++ L +L L + + N ++ T L + + LT L + N+
Sbjct: 65 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQIT 120
Query: 448 QLPSTSMGNLCNLHSLDISYNHITG---------------EIKELTNAFSACNVSTLETL 492
+ + NL NL+ L++S N I+ ++T+ N++TLE L
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERL 178
Query: 493 DLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRIIS 552
D++SNK+ S + + L++L +L + N +S I
Sbjct: 179 DISSNKV--------------------------SDISVLAKLTNLESLIATNNQISDITP 212
Query: 553 ENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLD 587
+G L+ L L GN + + T NL+ LD
Sbjct: 213 --LGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 245
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 48/214 (22%)
Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
L+ I+ SNN+ ++ L +L L + + N ++ T L + + LT L + N+
Sbjct: 65 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQIT 120
Query: 448 QLPSTSMGNLCNLHSLDISYNHITG--------EIKEL------TNAFSACNVSTLETLD 493
+ + NL NL+ L++S N I+ +++L T+ N++TLE LD
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLD 178
Query: 494 LASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRIISE 553
++SNK+ S + + L++L +L + N +S I
Sbjct: 179 ISSNKV--------------------------SDISVLAKLTNLESLIATNNQISDITP- 211
Query: 554 NIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLD 587
+G L+ L L GN + + T NL+ LD
Sbjct: 212 -LGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 244
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 48/214 (22%)
Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
L+ I+ SNN+ ++ L +L L + + N ++ T L + + LT L + N+
Sbjct: 65 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQIT 120
Query: 448 QLPSTSMGNLCNLHSLDISYNHITG--------EIKEL------TNAFSACNVSTLETLD 493
+ + NL NL+ L++S N I+ +++L T+ N++TLE LD
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLD 178
Query: 494 LASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRIISE 553
++SNK+ S + + L++L +L + N +S I
Sbjct: 179 ISSNKV--------------------------SDISVLAKLTNLESLIATNNQISDITP- 211
Query: 554 NIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLD 587
+G L+ L L GN + + T NL+ LD
Sbjct: 212 -LGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 244
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 48/214 (22%)
Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
L+ I+ SNN+ ++ L +L L + + N ++ T L + + LT L + N+
Sbjct: 70 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQIT 125
Query: 448 QLPSTSMGNLCNLHSLDISYNHITG--------EIKEL------TNAFSACNVSTLETLD 493
+ + NL NL+ L++S N I+ +++L T+ N++TLE LD
Sbjct: 126 DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 183
Query: 494 LASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRIISE 553
++SNK+ S + + L++L +L + N +S I
Sbjct: 184 ISSNKV--------------------------SDISVLAKLTNLESLIATNNQISDITP- 216
Query: 554 NIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLD 587
+G L+ L L GN + + T NL+ LD
Sbjct: 217 -LGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 249
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 23/123 (18%)
Query: 479 NAFSACNVSTLETLDLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLR 538
NAFS ++ +LE LDL+ N L SF G S + L+
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGL----------------------SFKGCCSQSDFGTTSLK 376
Query: 539 ALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSL 598
L LSFN + + S +G L + LD ++ + + F +L L YL IS +++ +
Sbjct: 377 YLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 599 VFN 601
FN
Sbjct: 436 AFN 438
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 97 NIGNLSNLQYLDLSYQNLKEY-QITKELWVSDLIWLP---------------DLSSSRYL 140
N L L++LD + NLK+ + + L + +LI+L LSS L
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450
Query: 141 HLEGMKLSKVTNWL-QVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS 199
+ G + N+L + EL +L L LS CQL F + +SL +L ++ + S
Sbjct: 451 KMAGNSFQE--NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508
Query: 200 QIPQWLFN-ISTLVTLNLRSSQLSGSIPK 227
+P +F+ +++L + L ++ S P+
Sbjct: 509 -VPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
L+V+D+S N+ L +L L L L L GN L L +L L + N+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 448 QLPSTSMGNLCNLHSLDISYNHI 470
+LP+ + L NL +L + N +
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 48/214 (22%)
Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
L+ I+ SNN+ ++ L +L L + + N ++ T L + + LT L + N+
Sbjct: 69 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQIT 124
Query: 448 QLPSTSMGNLCNLHSLDISYNHITG--------EIKEL------TNAFSACNVSTLETLD 493
+ + NL NL+ L++S N I+ +++L T+ N++TLE LD
Sbjct: 125 DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 182
Query: 494 LASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRIISE 553
++SNK+ S + + L++L +L + N +S I
Sbjct: 183 ISSNKV--------------------------SDISVLAKLTNLESLIATNNQISDITP- 215
Query: 554 NIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLD 587
+G L+ L L GN + + T NL+ LD
Sbjct: 216 -LGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 248
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
L+V+D+S N+ L +L L L L L GN L L +L L + N+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 448 QLPSTSMGNLCNLHSLDISYNHI 470
+LP+ + L NL +L + N +
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
L+V+D+S N+ L +L L L L L GN L L +L L + N+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 448 QLPSTSMGNLCNLHSLDISYNHI 470
+LP+ + L NL +L + N +
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
L+V+D+S N+ L +L L L L L GN L L +L L + N+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 448 QLPSTSMGNLCNLHSLDISYNHI 470
+LP+ + L NL +L + N +
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 98 IGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVV 157
+ L+NLQYL + V+DL L +LS L + K+S ++
Sbjct: 153 LAGLTNLQYLSIGNN-----------QVNDLTPLANLSKLTTLRADDNKISDISPLA--- 198
Query: 158 NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELS 193
LP+L+E+HL + Q++ P N ++L I+ L+
Sbjct: 199 -SLPNLIEVHLKDNQIS--DVSPLANLSNLFIVTLT 231
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Query: 368 SNAAISDTIPDWFWGVISQKLSVIDLSNNKFFG-GILSSLCSLPSLYWLRLGGNNLSGEL 426
NA + P F G+ +D + G G+ L +L LY L NNL
Sbjct: 88 DNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLY---LQDNNLQALP 144
Query: 427 STSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNV 486
+ D LT L + GNR +P + L +L L + NH+ + +AF ++
Sbjct: 145 DNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVA---RVHPHAFR--DL 199
Query: 487 STLETLDLASNKL 499
L TL L +N L
Sbjct: 200 GRLMTLYLFANNL 212
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 384 ISQKLSVIDLSNN--KFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDI 441
+ +K+ +I + N K F + +SL L L N L G+L + +L +L++
Sbjct: 303 VGEKIQIIYIGYNNLKTFP-VETSLQKXKKLGXLECLYNQLEGKLPAFGSEI-KLASLNL 360
Query: 442 GGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG 500
N+ ++P+ G + +L ++N ++K + N F A +VS +D + N++G
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHN----KLKYIPNIFDAKSVSVXSAIDFSYNEIG 415
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%)
Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
L+V+D+S N+ L +L L L L L GN L L +L L + N
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 448 QLPSTSMGNLCNLHSLDISYNHI 470
+LP+ + L NL +L + N +
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%)
Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
L+V+D+S N+ L +L L L L L GN L L +L L + N
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 448 QLPSTSMGNLCNLHSLDISYNHI 470
+LP+ + L NL +L + N +
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%)
Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
L+V+D+S N+ L +L L L L L GN L L +L L + N
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 448 QLPSTSMGNLCNLHSLDISYNHI 470
+LP+ + L NL +L + N +
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%)
Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
L+V+D+S N+ L +L L L L L GN L L +L L + N
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
Query: 448 QLPSTSMGNLCNLHSLDISYNHI 470
+LP+ + L NL +L + N +
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%)
Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
L+V+D+S N+ L +L L L L L GN L L +L L + N
Sbjct: 103 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
Query: 448 QLPSTSMGNLCNLHSLDISYNHI 470
+LP+ + L NL +L + N +
Sbjct: 163 ELPAGLLNGLENLDTLLLQENSL 185
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%)
Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
L+V+D+S N+ L +L L L L L GN L L +L L + N
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 448 QLPSTSMGNLCNLHSLDISYNHI 470
+LP+ + L NL +L + N +
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 40/163 (24%)
Query: 433 CSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT----GEIKELTNAFSACNVST 488
C D F +PS G + SLD+S+N IT G+++ AC +
Sbjct: 30 CDASGVCDGRSRSFTSIPS---GLTAAMKSLDLSFNKITYIGHGDLR-------AC--AN 77
Query: 489 LETLDLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFNVMS 548
L+ L L S+++ + G S+G+L HL LS N +S
Sbjct: 78 LQVLILKSSRIN---------------------TIEGDAFYSLGSLEHLD---LSDNHLS 113
Query: 549 RIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTI 591
+ S G LS L+L GN ++ + F NL+ L L I
Sbjct: 114 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 156
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 40/163 (24%)
Query: 433 CSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT----GEIKELTNAFSACNVST 488
C D F +PS G + SLD+S+N IT G+++ AC +
Sbjct: 4 CDASGVCDGRSRSFTSIPS---GLTAAMKSLDLSFNKITYIGHGDLR-------AC--AN 51
Query: 489 LETLDLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFNVMS 548
L+ L L S+++ + G S+G+L HL LS N +S
Sbjct: 52 LQVLILKSSRIN---------------------TIEGDAFYSLGSLEHLD---LSDNHLS 87
Query: 549 RIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTI 591
+ S G LS L+L GN ++ + F NL+ L L I
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 7/160 (4%)
Query: 441 IGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG 500
+ GNR +P+ S NL L + N + +A + ++ LE LDL+ N
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSN-----VLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 501 GNLPDXXXXXXXXXXXXXXXXSFLGSL-PTSIGNLSHLRALYLSFNVMSRIISENIGQLS 559
++ L L P L+ L+ LYL N + + + L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 560 EPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLV 599
L L+GN V E+ FR L LD L + + + V
Sbjct: 154 NLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRVAHV 192
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 7/160 (4%)
Query: 441 IGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG 500
+ GNR +P+ S NL L + N + +A + ++ LE LDL+ N
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSN-----VLARIDAAAFTGLALLEQLDLSDNAQL 92
Query: 501 GNLPDXXXXXXXXXXXXXXXXSFLGSL-PTSIGNLSHLRALYLSFNVMSRIISENIGQLS 559
++ L L P L+ L+ LYL N + + + L
Sbjct: 93 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 152
Query: 560 EPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLV 599
L L+GN V E+ FR L LD L + + + V
Sbjct: 153 NLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRVAHV 191
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 19/133 (14%)
Query: 101 LSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHL---EGMKLSKVTNWLQVV 157
L NLQ LDLS+ +++ + L +L +YL+L E + L Q
Sbjct: 348 LENLQKLDLSHSDIEASDCCN-------LQLKNLRHLQYLNLSYNEPLGLED-----QAF 395
Query: 158 NELP--SLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLN 215
E P L+++ ++ + P S PF N L +L LS+ ++ L + L LN
Sbjct: 396 KECPQLELLDVAFTHLHVKAPHS-PFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLN 454
Query: 216 LRSSQL-SGSIPK 227
L+ + GSI K
Sbjct: 455 LQGNSFQDGSISK 467
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD 195
++RYL+L+ + + L L L LS + + F SL+ LEL +D
Sbjct: 36 NTRYLNLQENSIQVIRT--DTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLEL-FD 92
Query: 196 NFNSQIPQWLFN-ISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLA 242
N + +P F +S L L LR++ + SIP + ++ +LRRLDL
Sbjct: 93 NRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLG 139
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 34/88 (38%)
Query: 384 ISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG 443
I + ++DL N+ S P L L L N +S + + L L +
Sbjct: 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89
Query: 444 NRFLQLPSTSMGNLCNLHSLDISYNHIT 471
NR +P L NL LDIS N I
Sbjct: 90 NRLKLIPLGVFTGLSNLTKLDISENKIV 117
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 387 KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRF 446
+L V+DLS + + SL L L L GN + + S L L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 447 LQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKL 499
L + +G+L L L++++N I +L FS N++ LE LDL+SNK+
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFS--NLTNLEHLDLSSNKI 161
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 387 KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRF 446
+L V+DLS + + SL L L L GN + + S L L
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 114
Query: 447 LQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKL 499
L + +G+L L L++++N I +L FS N++ LE LDL+SNK+
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFS--NLTNLEHLDLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 387 KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRF 446
+L V+DLS + + SL L L L GN + + S L L
Sbjct: 54 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 113
Query: 447 LQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKL 499
L + +G+L L L++++N I +L FS N++ LE LDL+SNK+
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFS--NLTNLEHLDLSSNKI 162
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 387 KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRF 446
+L V+DLS + + SL L L L GN + + S L L
Sbjct: 54 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 113
Query: 447 LQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKL 499
L + +G+L L L++++N I +L FS N++ LE LDL+SNK+
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFS--NLTNLEHLDLSSNKI 162
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 101 LSNLQYLDLSYQNLKEYQITKELWVSDLIWLP--DLSSSRYLHLEGM----KLSKVTNWL 154
LSNL+YL+L+ NL+E L D + L LS+ R +G+ KL + + +
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
Query: 155 QVV-----NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFN 198
QV+ + L SLVE++L++ L LP FT L LE + + N
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTL---LPHDLFTPLHHLERIHLHHN 289
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 379 WFWGVI-------SQKLSVIDLSNNKFFGGILSSLCSLPS-----LYWLRLGGNNLSGEL 426
W GVI S + + N G SL S+PS + L L N ++
Sbjct: 9 WVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYIS 68
Query: 427 STSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT 471
++ L C L AL + N + S +L +L LD+SYN+++
Sbjct: 69 NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,013,788
Number of Sequences: 62578
Number of extensions: 633023
Number of successful extensions: 1709
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1317
Number of HSP's gapped (non-prelim): 302
length of query: 636
length of database: 14,973,337
effective HSP length: 105
effective length of query: 531
effective length of database: 8,402,647
effective search space: 4461805557
effective search space used: 4461805557
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)