Query 037514
Match_columns 636
No_of_seqs 476 out of 4017
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 13:02:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.4E-59 3.1E-64 543.8 39.8 527 44-601 28-588 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.3E-54 2.7E-59 502.5 35.0 517 78-627 69-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.5E-41 3.4E-46 333.9 8.4 406 186-634 79-487 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.5E-41 5.5E-46 332.4 3.2 369 79-544 79-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.5E-38 5.4E-43 298.4 -16.8 475 79-597 46-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.4E-38 3E-43 300.1 -20.4 439 69-572 82-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 5.1E-35 1.1E-39 303.2 -4.3 474 69-595 12-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 8.7E-35 1.9E-39 301.5 -5.4 462 79-594 46-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 9.9E-34 2.2E-38 280.9 -4.2 373 76-553 5-380 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.5E-31 3.3E-36 265.5 -1.0 372 163-605 9-383 (1255)
11 KOG4237 Extracellular matrix p 99.9 3.4E-29 7.4E-34 236.6 -2.8 164 26-222 34-201 (498)
12 PLN03210 Resistant to P. syrin 99.9 1.9E-23 4.1E-28 242.6 28.5 243 282-545 654-903 (1153)
13 PLN03210 Resistant to P. syrin 99.9 1.9E-22 4.1E-27 234.3 26.9 307 163-522 591-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 3.3E-26 7.1E-31 216.5 -6.4 395 162-594 68-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 7.5E-20 1.6E-24 197.3 17.7 135 78-247 201-335 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.4E-19 3E-24 195.2 18.4 63 488-555 403-465 (788)
17 cd00116 LRR_RI Leucine-rich re 99.8 4.8E-19 1E-23 179.3 4.9 208 386-595 81-318 (319)
18 cd00116 LRR_RI Leucine-rich re 99.7 1.2E-18 2.7E-23 176.3 4.5 191 405-597 76-291 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 1.8E-17 4E-22 180.2 13.0 100 410-524 325-428 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 2.9E-17 6.3E-22 178.6 14.1 247 286-572 179-428 (754)
21 KOG0617 Ras suppressor protein 99.7 3.7E-19 8.1E-24 149.7 -6.0 161 74-251 29-190 (264)
22 KOG0617 Ras suppressor protein 99.6 9.9E-17 2.1E-21 135.2 -3.7 181 386-577 33-217 (264)
23 PF14580 LRR_9: Leucine-rich r 99.2 3.8E-12 8.2E-17 113.1 2.4 37 79-117 20-57 (175)
24 KOG1909 Ran GTPase-activating 99.2 4.3E-12 9.4E-17 119.9 1.7 250 280-547 25-310 (382)
25 PF14580 LRR_9: Leucine-rich r 99.2 2.7E-11 6E-16 107.6 5.1 108 133-248 17-127 (175)
26 KOG1909 Ran GTPase-activating 99.1 2.1E-11 4.6E-16 115.3 2.9 184 386-571 92-310 (382)
27 PLN03150 hypothetical protein; 99.1 4.2E-10 9.1E-15 122.6 11.4 145 41-222 368-528 (623)
28 PLN03150 hypothetical protein; 99.1 3.1E-10 6.7E-15 123.7 9.7 107 489-595 420-526 (623)
29 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.4E-16 120.4 -1.4 164 75-248 118-285 (505)
30 KOG3207 Beta-tubulin folding c 99.0 4.6E-11 1E-15 116.1 1.4 208 358-572 119-339 (505)
31 KOG0532 Leucine-rich repeat (L 99.0 4.3E-12 9.3E-17 127.0 -5.9 195 359-570 74-271 (722)
32 COG4886 Leucine-rich repeat (L 99.0 3.4E-10 7.4E-15 117.9 7.9 178 386-576 116-294 (394)
33 COG4886 Leucine-rich repeat (L 99.0 5.1E-10 1.1E-14 116.6 8.2 193 390-597 97-290 (394)
34 KOG1259 Nischarin, modulator o 99.0 2.1E-11 4.5E-16 112.6 -2.3 134 100-251 282-416 (490)
35 KOG1259 Nischarin, modulator o 99.0 6.6E-11 1.4E-15 109.3 0.9 129 433-572 283-412 (490)
36 KOG0532 Leucine-rich repeat (L 99.0 1.6E-11 3.4E-16 123.0 -4.1 195 386-595 75-271 (722)
37 KOG0531 Protein phosphatase 1, 99.0 9.6E-11 2.1E-15 122.1 -0.3 127 78-222 72-199 (414)
38 KOG4658 Apoptotic ATPase [Sign 98.8 1.6E-09 3.4E-14 120.6 4.1 131 100-245 521-653 (889)
39 PF13855 LRR_8: Leucine rich r 98.8 2.7E-09 5.9E-14 77.8 2.9 56 514-569 4-59 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.8 6.8E-09 1.5E-13 115.7 7.2 128 78-220 523-653 (889)
41 PF13855 LRR_8: Leucine rich r 98.8 3.7E-09 8E-14 77.1 2.7 61 487-547 1-61 (61)
42 KOG0531 Protein phosphatase 1, 98.7 1.4E-09 3E-14 113.4 -0.5 221 356-596 91-317 (414)
43 KOG1859 Leucine-rich repeat pr 98.7 2.6E-10 5.7E-15 117.4 -8.5 159 71-248 102-293 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.5 6.6E-09 1.4E-13 96.3 -3.7 157 386-545 185-348 (419)
45 KOG2120 SCF ubiquitin ligase, 98.4 5.5E-09 1.2E-13 96.8 -6.0 84 162-248 186-274 (419)
46 KOG2982 Uncharacterized conser 98.3 1.5E-07 3.2E-12 87.5 0.9 84 509-592 197-287 (418)
47 KOG2982 Uncharacterized conser 98.3 1.8E-07 4E-12 86.9 0.9 89 133-221 69-158 (418)
48 KOG1859 Leucine-rich repeat pr 98.3 5.8E-08 1.3E-12 100.6 -3.6 194 386-594 84-289 (1096)
49 COG5238 RNA1 Ran GTPase-activa 98.2 5.9E-07 1.3E-11 82.5 2.7 237 359-597 29-316 (388)
50 KOG4579 Leucine-rich repeat (L 98.1 8.3E-07 1.8E-11 73.0 0.0 112 460-578 29-141 (177)
51 PF12799 LRR_4: Leucine Rich r 98.0 4.2E-06 9.1E-11 55.7 3.1 40 78-118 1-40 (44)
52 KOG4579 Leucine-rich repeat (L 98.0 4.3E-07 9.4E-12 74.6 -2.6 84 434-524 53-136 (177)
53 COG5238 RNA1 Ran GTPase-activa 98.0 1.1E-06 2.4E-11 80.8 -0.5 110 360-471 157-285 (388)
54 KOG1644 U2-associated snRNP A' 98.0 1.2E-05 2.5E-10 71.1 5.7 87 157-244 60-150 (233)
55 KOG1644 U2-associated snRNP A' 97.9 2E-05 4.4E-10 69.6 6.3 104 103-219 43-150 (233)
56 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.6E-10 53.5 3.4 35 513-548 3-37 (44)
57 KOG4341 F-box protein containi 97.9 1.2E-06 2.5E-11 85.6 -2.2 285 210-522 139-437 (483)
58 KOG3665 ZYG-1-like serine/thre 97.9 5.3E-06 1.1E-10 90.5 1.7 214 78-318 60-283 (699)
59 KOG4341 F-box protein containi 97.7 3.4E-06 7.4E-11 82.4 -2.1 235 357-595 187-437 (483)
60 KOG3665 ZYG-1-like serine/thre 97.7 3E-05 6.5E-10 84.7 3.6 139 360-502 122-265 (699)
61 PRK15386 type III secretion pr 97.6 0.00021 4.6E-09 71.9 8.7 136 406-569 48-187 (426)
62 PRK15386 type III secretion pr 97.6 0.0002 4.4E-09 72.1 8.3 134 386-546 52-188 (426)
63 PF13306 LRR_5: Leucine rich r 97.5 0.00023 5.1E-09 60.9 6.6 44 73-118 7-50 (129)
64 PF13306 LRR_5: Leucine rich r 97.5 0.0003 6.6E-09 60.2 6.5 107 96-218 6-112 (129)
65 KOG2123 Uncharacterized conser 97.2 8.1E-06 1.8E-10 75.5 -5.9 86 77-176 18-103 (388)
66 KOG2739 Leucine-rich acidic nu 97.1 0.00031 6.8E-09 65.1 2.7 13 161-173 91-103 (260)
67 KOG2739 Leucine-rich acidic nu 97.1 0.00025 5.4E-09 65.7 2.0 85 507-592 61-151 (260)
68 KOG2123 Uncharacterized conser 96.9 7E-05 1.5E-09 69.5 -3.0 100 487-590 19-123 (388)
69 KOG1947 Leucine rich repeat pr 96.6 0.00088 1.9E-08 72.0 1.9 62 409-470 242-307 (482)
70 KOG1947 Leucine rich repeat pr 96.4 0.0011 2.4E-08 71.2 0.8 160 386-549 188-376 (482)
71 KOG4308 LRR-containing protein 95.2 0.00035 7.5E-09 73.2 -8.7 189 337-525 88-304 (478)
72 KOG4308 LRR-containing protein 94.8 0.00044 9.4E-09 72.5 -9.2 187 388-574 89-305 (478)
73 PF00560 LRR_1: Leucine Rich R 94.8 0.013 2.7E-07 32.3 0.8 11 514-524 3-13 (22)
74 PF00560 LRR_1: Leucine Rich R 94.1 0.024 5.1E-07 31.2 0.9 17 561-578 2-18 (22)
75 PF13504 LRR_7: Leucine rich r 93.1 0.064 1.4E-06 27.3 1.4 13 103-115 2-14 (17)
76 KOG3864 Uncharacterized conser 91.9 0.056 1.2E-06 48.5 0.5 86 434-522 101-187 (221)
77 smart00369 LRR_TYP Leucine-ric 91.8 0.16 3.5E-06 29.1 2.2 23 558-581 1-23 (26)
78 smart00370 LRR Leucine-rich re 91.8 0.16 3.5E-06 29.1 2.2 23 558-581 1-23 (26)
79 KOG0473 Leucine-rich repeat pr 90.4 0.0055 1.2E-07 55.7 -7.3 87 73-173 37-123 (326)
80 KOG3864 Uncharacterized conser 89.8 0.075 1.6E-06 47.7 -0.7 84 335-419 100-185 (221)
81 smart00370 LRR Leucine-rich re 88.8 0.45 9.7E-06 27.2 2.3 21 434-454 2-22 (26)
82 smart00369 LRR_TYP Leucine-ric 88.8 0.45 9.7E-06 27.2 2.3 21 434-454 2-22 (26)
83 KOG0473 Leucine-rich repeat pr 86.3 0.035 7.7E-07 50.7 -5.0 55 490-546 68-122 (326)
84 PF13516 LRR_6: Leucine Rich r 83.2 0.67 1.5E-05 25.9 1.1 15 458-472 2-16 (24)
85 smart00365 LRR_SD22 Leucine-ri 82.7 1.1 2.5E-05 25.6 1.9 16 102-117 2-17 (26)
86 TIGR00864 PCC polycystin catio 80.2 0.8 1.7E-05 57.0 1.4 43 565-610 1-43 (2740)
87 KOG3763 mRNA export factor TAP 65.7 3.1 6.7E-05 43.5 1.3 36 486-521 217-254 (585)
88 smart00368 LRR_RI Leucine rich 65.0 5.1 0.00011 23.4 1.7 14 102-115 2-15 (28)
89 smart00364 LRR_BAC Leucine-ric 64.3 4.7 0.0001 23.1 1.3 16 103-118 3-18 (26)
90 KOG4242 Predicted myosin-I-bin 64.3 32 0.0007 35.6 8.0 279 307-595 162-479 (553)
91 PF08263 LRRNT_2: Leucine rich 60.7 8 0.00017 25.3 2.2 25 44-68 2-28 (43)
92 KOG4242 Predicted myosin-I-bin 57.4 69 0.0015 33.3 8.9 60 412-471 415-481 (553)
93 KOG3763 mRNA export factor TAP 50.0 9.5 0.00021 40.1 1.7 14 210-223 271-284 (585)
94 smart00367 LRR_CC Leucine-rich 35.8 26 0.00056 19.8 1.4 12 511-522 2-13 (26)
95 TIGR00864 PCC polycystin catio 26.8 40 0.00088 43.1 2.3 33 517-549 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.4e-59 Score=543.76 Aligned_cols=527 Identities=28% Similarity=0.358 Sum_probs=428.6
Q ss_pred HHhHHHHHhcc-CCCCCCCCCCCCC------------------------------cccCccccCCCCCCEEeCCCCCCCC
Q 037514 44 EREREALLKFK-GLIDPSARLSSWK------------------------------SPIPEFVYSLKKLKLLDLSESSFSG 92 (636)
Q Consensus 44 ~~~~~~l~~~~-~l~~~~~~~~~w~------------------------------~~~p~~~~~l~~L~~L~Ls~~~i~~ 92 (636)
+.|+.+++.|| ++.++...+.+|. +.+|..|..+++|++|+|++|++++
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~ 107 (968)
T PLN00113 28 AEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG 107 (968)
T ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCC
Confidence 35788888888 7766655566664 1233445556666666666666665
Q ss_pred CCCcccc-CCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCC
Q 037514 93 MLPPNIG-NLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNC 171 (636)
Q Consensus 93 ~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 171 (636)
.+|..+. ++++|++|++++|.+++..+ ...+++|++|++++|.+.+. ++..++.+++|++|++++|
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-----------~~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n 174 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIP-----------RGSIPNLETLDLSNNMLSGE--IPNDIGSFSSLKVLDLGGN 174 (968)
T ss_pred cCChHHhccCCCCCEEECcCCccccccC-----------ccccCCCCEEECcCCccccc--CChHHhcCCCCCEEECccC
Confidence 5555443 56666666666666554222 34567777777777777654 3456778888888888888
Q ss_pred cCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccc
Q 037514 172 QLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKE 251 (636)
Q Consensus 172 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~ 251 (636)
.+.+..|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|. .++++++|++|++++|.+.+..|
T Consensus 175 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 175 VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hHhcCCCCCEEECcCceeccccC
Confidence 88777788888888888888888888877888888888888888888888776663 46788888888888888888888
Q ss_pred hhhhccccCCcccchhhc--cCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecC
Q 037514 252 QFIQTLSGCNNSTLETLE--TQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMR 329 (636)
Q Consensus 252 ~~l~~l~~~~~~~L~~L~--~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 329 (636)
..+..++ +|+.|+ .+.+.+.+|..+..+++|++|++++|.+.+.+|. .+.++++|+.|++++| ...+..+
T Consensus 254 ~~l~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n--~~~~~~~ 325 (968)
T PLN00113 254 SSLGNLK-----NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSN--NFTGKIP 325 (968)
T ss_pred hhHhCCC-----CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCC--ccCCcCC
Confidence 8888777 777776 6677778888888888888888888888877766 7888888888888888 5555666
Q ss_pred CCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCC
Q 037514 330 SDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSL 409 (636)
Q Consensus 330 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l 409 (636)
..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|.++... ++|+.|++++|.+.+..|..+..+
T Consensus 326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~--~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS--GNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc--CCCCEEECcCCEecccCCHHHhCC
Confidence 777788888888888888888888888888889999999888888888888777 788999999998888888888889
Q ss_pred CCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcc
Q 037514 410 PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTL 489 (636)
Q Consensus 410 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L 489 (636)
++|+.|++++|++++..|..+..++.|++|++++|.+.+..+..+..+++|+.|++++|++.+.+|..+. .++|
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~------~~~L 477 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG------SKRL 477 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc------cccc
Confidence 9999999999999888888888999999999999999988887788899999999999999887776542 3678
Q ss_pred cEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCC
Q 037514 490 ETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGN 569 (636)
Q Consensus 490 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 569 (636)
+.|++++|++++..|..+..+++|+.|++++|.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|+.|++++|
T Consensus 478 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 557 (968)
T PLN00113 478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557 (968)
T ss_pred eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecChhhhcCCCCCCeeeCCCCCCCcccc
Q 037514 570 SWEGVITEKHFRNLSGLDYLTISSSNSSLVFN 601 (636)
Q Consensus 570 ~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~ 601 (636)
++.+.+|.. +..+++|+.|++++|++....+
T Consensus 558 ~l~~~~p~~-l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 558 QLSGEIPKN-LGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred cccccCChh-HhcCcccCEEeccCCcceeeCC
Confidence 999999986 7789999999999998765444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-54 Score=502.54 Aligned_cols=517 Identities=31% Similarity=0.386 Sum_probs=463.1
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCc-ccccccccccccccCCCCCCCCEEecCCccCCCCCChhhh
Q 037514 78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKE-YQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQV 156 (636)
Q Consensus 78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 156 (636)
.+++.|+|++|.+++.++..|..+++|++|+|++|++++ ++... +..+++|++|++++|.+++...
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~---------~~~l~~L~~L~Ls~n~l~~~~p---- 135 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI---------FTTSSSLRYLNLSNNNFTGSIP---- 135 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHH---------hccCCCCCEEECcCCccccccC----
Confidence 579999999999999999999999999999999999874 33221 5589999999999999986521
Q ss_pred hCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCC
Q 037514 157 VNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNL 236 (636)
Q Consensus 157 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 236 (636)
.+.+++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|. .++++++|
T Consensus 136 ~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L 214 (968)
T PLN00113 136 RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSL 214 (968)
T ss_pred ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCc
Confidence 25689999999999999999999999999999999999999999999999999999999999999987764 48899999
Q ss_pred CEEEcccccCccccchhhhccccCCcccchhhc--cCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCE
Q 037514 237 RRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNS 314 (636)
Q Consensus 237 ~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~ 314 (636)
++|++++|.+.+..|..+..++ +|+.|+ .+.+.+.+|..++++++|++|++++|++.+.+|. .+.++++|++
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~ 288 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLT-----SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLIS 288 (968)
T ss_pred cEEECcCCccCCcCChhHhcCC-----CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCE
Confidence 9999999999999999999988 888887 7788899999999999999999999999987877 7899999999
Q ss_pred EEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECc
Q 037514 315 LYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLS 394 (636)
Q Consensus 315 L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls 394 (636)
|++++| ...+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+... ++|+.|+++
T Consensus 289 L~Ls~n--~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~--~~L~~L~Ls 364 (968)
T PLN00113 289 LDLSDN--SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH--NNLTVLDLS 364 (968)
T ss_pred EECcCC--eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC--CCCcEEECC
Confidence 999999 6666777778889999999999999999999999999999999999999999999999888 899999999
Q ss_pred cCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCch
Q 037514 395 NNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEI 474 (636)
Q Consensus 395 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 474 (636)
+|++.+..|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++.+
T Consensus 365 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 444 (968)
T PLN00113 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444 (968)
T ss_pred CCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc
Confidence 99999999999999999999999999999999999999999999999999999988888999999999999999999887
Q ss_pred hhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcccccccccc
Q 037514 475 KELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISEN 554 (636)
Q Consensus 475 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~ 554 (636)
+..+. .+++|+.|++++|++.+.+|..+ ..++|+.|++++|++.+.+|..+.++++|+.|++++|++.+.+|..
T Consensus 445 ~~~~~-----~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 518 (968)
T PLN00113 445 NSRKW-----DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518 (968)
T ss_pred Chhhc-----cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH
Confidence 76554 34788999999999998888765 4589999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccccccccccCcceeeeecCccccccCCC
Q 037514 555 IGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPFNLYTIRGGTRLLVQGLP 627 (636)
Q Consensus 555 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p 627 (636)
+..+++|++|++++|.+++.+|.. |..+++|+.|++++|++....+ ........++.+.+.++.....+|
T Consensus 519 ~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 519 LSSCKKLVSLDLSHNQLSGQIPAS-FSEMPVLSQLDLSQNQLSGEIP--KNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred HcCccCCCEEECCCCcccccCChh-HhCcccCCEEECCCCcccccCC--hhHhcCcccCEEeccCCcceeeCC
Confidence 999999999999999999988875 8899999999999998764433 222223456666666665555555
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-41 Score=333.94 Aligned_cols=406 Identities=22% Similarity=0.246 Sum_probs=336.0
Q ss_pred CCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCcccc
Q 037514 186 SLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTL 265 (636)
Q Consensus 186 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L 265 (636)
.-+.|++++|.+...-+..|.++++|+++++.+|.++ .+|.+ .....+|+.|+|.+|.|+....+.++.+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l-------- 148 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRF-GHESGHLEKLDLRHNLISSVTSEELSAL-------- 148 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccc-cccccceeEEeeeccccccccHHHHHhH--------
Confidence 3456888888888877778888888888888888887 66642 2334458888888888876555544444
Q ss_pred hhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccC
Q 037514 266 ETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAIND 345 (636)
Q Consensus 266 ~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~ 345 (636)
+.|+.|||+.|.++. ++...|..-.++++|+|++| .++......|..+.+|.+|.++.
T Consensus 149 -------------------~alrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N--~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 149 -------------------PALRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASN--RITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred -------------------hhhhhhhhhhchhhc-ccCCCCCCCCCceEEeeccc--cccccccccccccchheeeeccc
Confidence 477888888888876 66657777778888888888 55555566677777888888888
Q ss_pred CCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcc
Q 037514 346 CQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGE 425 (636)
Q Consensus 346 ~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 425 (636)
|.++...+..|..+++|+.|+|..|+|.-.--..|.++ ++|+.|.+..|.+.......|..+.++++|+|+.|++...
T Consensus 207 NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL--~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 207 NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL--PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc--hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 89988888889999999999999999986666778888 8999999999999888888899999999999999999877
Q ss_pred cCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCch
Q 037514 426 LSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPD 505 (636)
Q Consensus 426 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 505 (636)
...++.++++|+.|++++|.|..+.+..+..+++|++|+|++|+++...+..+..++ .|++|.|++|.+......
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-----~Le~LnLs~Nsi~~l~e~ 359 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-----QLEELNLSHNSIDHLAEG 359 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH-----HhhhhcccccchHHHHhh
Confidence 778899999999999999999999998999999999999999999987777777665 459999999999977777
Q ss_pred hhcCCCCCCEEeCcCCccCCccCh---hhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcC
Q 037514 506 SLGNLLCLEYLGLSENSFLGSLPT---SIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRN 582 (636)
Q Consensus 506 ~l~~l~~L~~L~Ls~n~~~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 582 (636)
.|.++++|++|||++|.++..+.+ .|.++++|+.|++.+|++..+...+|.+++.|+.|||.+|.+. +|...+|..
T Consensus 360 af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia-SIq~nAFe~ 438 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA-SIQPNAFEP 438 (873)
T ss_pred HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce-eeccccccc
Confidence 899999999999999998876654 5788999999999999999999999999999999999999998 566677988
Q ss_pred CCCCCeeeCCCCCCCcccccccccccCcceeeeecCccccccCCCcccCCCC
Q 037514 583 LSGLDYLTISSSNSSLVFNIRHDWIAPFNLYTIRGGTRLLVQGLPKYVTSPN 634 (636)
Q Consensus 583 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~~~~ 634 (636)
+ .|++|.+..- ++.|+|...|+++|-.+.+.-......+.-|+|+-+..
T Consensus 439 m-~Lk~Lv~nSs--sflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~ 487 (873)
T KOG4194|consen 439 M-ELKELVMNSS--SFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQS 487 (873)
T ss_pred c-hhhhhhhccc--ceEEeccHHHHHHHHHhcccccceeeeccCCcccccce
Confidence 8 9999988665 88999999999987665555444555666788876543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-41 Score=332.42 Aligned_cols=369 Identities=23% Similarity=0.284 Sum_probs=286.5
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCC-CCCCEEecCCccCCCCCChhhhh
Q 037514 79 KLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDL-SSSRYLHLEGMKLSKVTNWLQVV 157 (636)
Q Consensus 79 ~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~ 157 (636)
..+.||+++|.++..-+..|-++++|+.+++.+|.++.+|. ++.. .+|+.|+|.+|.|+.+.. +.+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~-----------f~~~sghl~~L~L~~N~I~sv~s--e~L 145 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPR-----------FGHESGHLEKLDLRHNLISSVTS--EEL 145 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccc-----------ccccccceeEEeeeccccccccH--HHH
Confidence 55778999999988888888899999999999998888775 4443 448888888888888744 677
Q ss_pred CCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCC
Q 037514 158 NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLR 237 (636)
Q Consensus 158 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 237 (636)
..++.|++|||+.|.++.+....|..-.++++|+|++|.|+..-...|..+.+|.+|.|++|+++ .+|...|.++++|+
T Consensus 146 ~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLE 224 (873)
T ss_pred HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhh
Confidence 77888888888888888777777777778888888888888766777777778888888888777 66655566677777
Q ss_pred EEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEc
Q 037514 238 RLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYL 317 (636)
Q Consensus 238 ~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L 317 (636)
.|+|..|.+.-. ..-.|..+++|+.|.+
T Consensus 225 ~LdLnrN~iriv----------------------------------------------------e~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 225 SLDLNRNRIRIV----------------------------------------------------EGLTFQGLPSLQNLKL 252 (873)
T ss_pred hhhccccceeee----------------------------------------------------hhhhhcCchhhhhhhh
Confidence 666666655411 1113444444444444
Q ss_pred cCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCc
Q 037514 318 SSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK 397 (636)
Q Consensus 318 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~ 397 (636)
.+| ++...-..+|..+.++++|+|+.|++...-..|+.++ +.|+.|++++|.
T Consensus 253 qrN--------------------------~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL--t~L~~L~lS~Na 304 (873)
T KOG4194|consen 253 QRN--------------------------DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL--TSLEQLDLSYNA 304 (873)
T ss_pred hhc--------------------------CcccccCcceeeecccceeecccchhhhhhccccccc--chhhhhccchhh
Confidence 444 3333344556667777777777777777777777777 788888888888
Q ss_pred CCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhh
Q 037514 398 FFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKEL 477 (636)
Q Consensus 398 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 477 (636)
|....++.+..+++|++|+|+.|+++...+..|..+..|++|.|+.|.+..+..++|..+++|++|||++|.+...+.+.
T Consensus 305 I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 305 IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence 88888888888999999999999998777788888999999999999999988888999999999999999998777775
Q ss_pred HHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcC
Q 037514 478 TNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSF 544 (636)
Q Consensus 478 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~ 544 (636)
-..+.. +++|+.|++.||++....-.+|.++.+|+.|||.+|.|....|.+|..+ .|++|.+..
T Consensus 385 a~~f~g--l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 385 AVAFNG--LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhhcc--chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 555554 4888999999999986666789999999999999999988889999888 888887754
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.5e-38 Score=298.42 Aligned_cols=475 Identities=21% Similarity=0.275 Sum_probs=349.6
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhC
Q 037514 79 KLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVN 158 (636)
Q Consensus 79 ~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 158 (636)
.+..|++++|.+. .+...+.++..|.+|++++|++...+++ ++.+..++.++.++|++..+| ..++
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~lp~a----------ig~l~~l~~l~vs~n~ls~lp---~~i~ 111 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQLPAA----------IGELEALKSLNVSHNKLSELP---EQIG 111 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhhhCCHH----------HHHHHHHHHhhcccchHhhcc---HHHh
Confidence 5677888888877 4455678888888888888888877764 777888888888888888765 4777
Q ss_pred CCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCE
Q 037514 159 ELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRR 238 (636)
Q Consensus 159 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~ 238 (636)
.+.+|+.++.++|.+.. .+..++.+..|+.++..+|+++. .|+++..+.+|..+++.+|++. .+|...+ +++.|++
T Consensus 112 s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ 187 (565)
T KOG0472|consen 112 SLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKH 187 (565)
T ss_pred hhhhhhhhhccccceee-cCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHh
Confidence 88888888888888765 45567778888888888888877 6778888888888888888887 4443223 3788888
Q ss_pred EEcccccCccccchhhhccccCCcccchhhc--cCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEE
Q 037514 239 LDLAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLY 316 (636)
Q Consensus 239 L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~ 316 (636)
+|...|-+. .+|..++.+. +|+.|+ .|.+. .+| .|..+..|.++++..|++.. +|.+....++++..||
T Consensus 188 ld~~~N~L~-tlP~~lg~l~-----~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 188 LDCNSNLLE-TLPPELGGLE-----SLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLD 258 (565)
T ss_pred cccchhhhh-cCChhhcchh-----hhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeee
Confidence 888777665 4566677776 677666 33332 344 78888889999998888876 7777777899999999
Q ss_pred ccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcC---CCccE---
Q 037514 317 LSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVIS---QKLSV--- 390 (636)
Q Consensus 317 L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~---~~L~~--- 390 (636)
+.+|+ ....|++..-+.+|.+|++++|.++ ..|..++++ +|+.|-+.+|.+...-.+.+..-.. +.|+.
T Consensus 259 LRdNk---lke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~ 333 (565)
T KOG0472|consen 259 LRDNK---LKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIK 333 (565)
T ss_pred ccccc---cccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhc
Confidence 99884 3456777788888999999999887 467778888 8999999999876443222111000 11111
Q ss_pred -EECccCcCC----cc-CCc---ccCCCCCCcEEEccCCcCCcccCCCCCCC---CCCCEEECCCCCCCCCcchhhcCCC
Q 037514 391 -IDLSNNKFF----GG-ILS---SLCSLPSLYWLRLGGNNLSGELSTSLPDC---SRLTALDIGGNRFLQLPSTSMGNLC 458 (636)
Q Consensus 391 -L~ls~n~l~----~~-~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~ 458 (636)
=.++..+-. .. .+. ....+.+.+.|++++-+++ .+|+..... .-.+..+++.|++.+.+.. +..+.
T Consensus 334 ~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~-L~~lk 411 (565)
T KOG0472|consen 334 DDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKR-LVELK 411 (565)
T ss_pred cCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhh-hHHHH
Confidence 111111110 01 111 1223556788888888887 455433222 2377889999988877653 44444
Q ss_pred CCCe-EeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCC
Q 037514 459 NLHS-LDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHL 537 (636)
Q Consensus 459 ~L~~-L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L 537 (636)
.+.+ +.+++|.+ +.+|..+..+ +.|..|++++|.+. .+|..++.+..|+.||++.|++. .+|+++..+..+
T Consensus 412 elvT~l~lsnn~i-sfv~~~l~~l-----~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l 483 (565)
T KOG0472|consen 412 ELVTDLVLSNNKI-SFVPLELSQL-----QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL 483 (565)
T ss_pred HHHHHHHhhcCcc-ccchHHHHhh-----hcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH
Confidence 4443 45555555 4777777655 55699999999888 78999999999999999999998 899999888889
Q ss_pred CeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCC
Q 037514 538 RALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSS 597 (636)
Q Consensus 538 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~ 597 (636)
+.+-.++|++..+.+..+.++..|.+||+.+|.+. .+|.. ++++++|++|+++||++.
T Consensus 484 Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~-LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 484 ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI-LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh-hccccceeEEEecCCccC
Confidence 99999999999988888999999999999999998 57775 899999999999999654
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.4e-38 Score=300.07 Aligned_cols=439 Identities=23% Similarity=0.292 Sum_probs=212.4
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514 69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS 148 (636)
Q Consensus 69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 148 (636)
++|++++++..++.|+.++|+++ .+|.+++.+.+|+.|++++|.+...+.+ ++.+-.|+.++..+|+++
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~----------i~~~~~l~dl~~~~N~i~ 150 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDS----------IGRLLDLEDLDATNNQIS 150 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCch----------HHHHhhhhhhhccccccc
Confidence 34444444445555555555544 4444455555555555555554444332 444445555555555555
Q ss_pred CCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCC
Q 037514 149 KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKF 228 (636)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 228 (636)
..|. .+..+.+|..+++.+|.+....+..+. ++.|++||+..|.+.. +|..++.+.+|..|+++.|++. .+|+
T Consensus 151 slp~---~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lPe- 223 (565)
T KOG0472|consen 151 SLPE---DMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLET-LPPELGGLESLELLYLRRNKIR-FLPE- 223 (565)
T ss_pred cCch---HHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhc-CChhhcchhhhHHHHhhhcccc-cCCC-
Confidence 4432 444455555555555555443333322 5555555555554443 4555555555555555555554 4442
Q ss_pred CCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCccccccccc-CCCCCCEEEccCCcCccccChhhhc
Q 037514 229 PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIG-QLAELVALNLYRNSWKGIITENHFQ 307 (636)
Q Consensus 229 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~i~~~~~~ 307 (636)
|.++..|++++++.|++. .+|.... ++.++.+||+..|++.. +|+ .+.
T Consensus 224 -f~gcs~L~Elh~g~N~i~----------------------------~lpae~~~~L~~l~vLDLRdNklke-~Pd-e~c 272 (565)
T KOG0472|consen 224 -FPGCSLLKELHVGENQIE----------------------------MLPAEHLKHLNSLLVLDLRDNKLKE-VPD-EIC 272 (565)
T ss_pred -CCccHHHHHHHhcccHHH----------------------------hhHHHHhcccccceeeecccccccc-Cch-HHH
Confidence 344555555555555444 3444433 56666666666666665 555 455
Q ss_pred CCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCC--CCcceec-------ccccc-------
Q 037514 308 NLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQ--ASVFKLT-------LSNAA------- 371 (636)
Q Consensus 308 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~-------L~~n~------- 371 (636)
.+.+|++||+++|. ....+.+++.+ .|+.|.+.||.+...--+.+..- .-|++|. ++.-.
T Consensus 273 lLrsL~rLDlSNN~---is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 273 LLRSLERLDLSNND---ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM 348 (565)
T ss_pred HhhhhhhhcccCCc---cccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence 66666666666662 22344455555 66666666665432111000000 0011110 00000
Q ss_pred --CCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCC--CCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCC
Q 037514 372 --ISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSL--PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447 (636)
Q Consensus 372 --~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 447 (636)
..+..|+.. .. .+.+.|++++-+++......|..- .-...+++++|++. ++|..+..+..+.+.-+..|+..
T Consensus 349 t~~~~~~~~~~-~~--i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 349 TLPSESFPDIY-AI--ITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred CCCCCcccchh-hh--hhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence 001111111 11 344555555555544333333221 12445555565554 44544444444433333333333
Q ss_pred CCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCcc
Q 037514 448 QLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSL 527 (636)
Q Consensus 448 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ 527 (636)
+.++..+..+++|..|++++|.+. .+|...+.+ ..|+.|+++.|++. ..|..+..+..++.+-.++|++....
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l-----v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd 497 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSL-----VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVD 497 (565)
T ss_pred ccchHHHHhhhcceeeecccchhh-hcchhhhhh-----hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccC
Confidence 444444555666666666655554 333333322 23466666666555 55555555555555555556665444
Q ss_pred ChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcce
Q 037514 528 PTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWE 572 (636)
Q Consensus 528 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 572 (636)
|+.+.++.+|..||+.+|.+.. +|..++++++|++|+++||++.
T Consensus 498 ~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCccC
Confidence 5556666666666666666544 3445666666666666666665
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=5.1e-35 Score=303.21 Aligned_cols=474 Identities=25% Similarity=0.328 Sum_probs=265.8
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514 69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS 148 (636)
Q Consensus 69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 148 (636)
.||..+.....+..|+++.|.+-...-+.+.+..+|+.||+++|.+...+.. +..+.+|+.|+++.|.|.
T Consensus 12 ~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~----------it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 12 LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQ----------ITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCch----------hhhHHHHhhcccchhhHh
Confidence 4666666556677777777765432223344455588888888777765543 666777777777777777
Q ss_pred CCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCC
Q 037514 149 KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKF 228 (636)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 228 (636)
..|. ...++.+|+++.|.+|.+. ..|..+..+++|++|++++|.+.. +|..+..++.+..+..++|.....
T Consensus 82 ~vp~---s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~---- 152 (1081)
T KOG0618|consen 82 SVPS---SCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQR---- 152 (1081)
T ss_pred hCch---hhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhhh----
Confidence 7653 6677777777777777655 356677777777777777777765 677777777777777777732212
Q ss_pred CCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcC
Q 037514 229 PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQN 308 (636)
Q Consensus 229 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~ 308 (636)
++... ++++++..|.+.+.++..+..+. ..-.|..|.+. ...+..+.+|+.+....|++... --.
T Consensus 153 -lg~~~-ik~~~l~~n~l~~~~~~~i~~l~-----~~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l-----~~~ 217 (1081)
T KOG0618|consen 153 -LGQTS-IKKLDLRLNVLGGSFLIDIYNLT-----HQLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL-----EIS 217 (1081)
T ss_pred -hcccc-chhhhhhhhhcccchhcchhhhh-----eeeecccchhh---hhhhhhccchhhhhhhhcccceE-----Eec
Confidence 22222 66777777766665555555443 21111123222 12233444444444444444331 112
Q ss_pred CCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCc
Q 037514 309 LTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKL 388 (636)
Q Consensus 309 l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L 388 (636)
-++++.|+.++|+.. .........+++.++++.+.+.+ +|+|+..+.+|+.++..+|.++ ..|..+... .+|
T Consensus 218 g~~l~~L~a~~n~l~----~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~--~~L 289 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLT----TLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRI--TSL 289 (1081)
T ss_pred CcchheeeeccCcce----eeccccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhh--hhH
Confidence 344555555555322 11122233455555555555542 3355555555555555555553 333333333 455
Q ss_pred cEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCC-CCCCCCC-CCEEECCCCCCCCCcchhhcCCCCCCeEeCc
Q 037514 389 SVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELST-SLPDCSR-LTALDIGGNRFLQLPSTSMGNLCNLHSLDIS 466 (636)
Q Consensus 389 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 466 (636)
+.|.+..|.+.. +|.....++.|++|+|..|++. ..|+ .+.-... |..|..+.|++...+...=...+.|+.|++.
T Consensus 290 ~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 290 VSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred HHHHhhhhhhhh-CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 555555555532 2333444555555555555554 2222 1222222 4445555555544432212234556666777
Q ss_pred CCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcc
Q 037514 467 YNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNV 546 (636)
Q Consensus 467 ~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~ 546 (636)
+|.+++.....+..+ +.|+.|+|++|++.......+.++..|++|+||+|++. .+|..+..+..|++|...+|+
T Consensus 368 nN~Ltd~c~p~l~~~-----~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNF-----KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred cCcccccchhhhccc-----cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCc
Confidence 777665544444322 45577777777776433445666677777777777766 566667777777777777776
Q ss_pred ccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCC
Q 037514 547 MSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN 595 (636)
Q Consensus 547 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 595 (636)
+... | .+.+++.|+.+|++.|+++...-...... ++|++||++||.
T Consensus 442 l~~f-P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 442 LLSF-P-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred eeec-h-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 6553 3 56667777777777776654332222222 677777777773
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=8.7e-35 Score=301.51 Aligned_cols=462 Identities=26% Similarity=0.295 Sum_probs=243.5
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhC
Q 037514 79 KLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVN 158 (636)
Q Consensus 79 ~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 158 (636)
+|+.||+++|.++ ..|..+..+.+|+.|+++.|.|...+.. ..++.+|++++|.+|.+...|. .+.
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp~s----------~~~~~~l~~lnL~~n~l~~lP~---~~~ 111 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVPSS----------CSNMRNLQYLNLKNNRLQSLPA---SIS 111 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCchh----------hhhhhcchhheeccchhhcCch---hHH
Confidence 3666666666654 5566666666666666666666655532 5666666666666666666543 566
Q ss_pred CCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCE
Q 037514 159 ELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRR 238 (636)
Q Consensus 159 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~ 238 (636)
.+.+|++|++++|.+. .+|..+..++.++.+..++|.-...++. .. ++.+++..|.+.+.++. .+..+.. .
T Consensus 112 ~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~-~i~~l~~--~ 182 (1081)
T KOG0618|consen 112 ELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLI-DIYNLTH--Q 182 (1081)
T ss_pred hhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhc-chhhhhe--e
Confidence 6666666666666654 3455555666666666666621111221 11 56666666665554432 2333333 4
Q ss_pred EEcccccCccccchhhhccccCCcccchhhc--cCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEE
Q 037514 239 LDLAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLY 316 (636)
Q Consensus 239 L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~ 316 (636)
|+|.+|.+... .+..++ .++.+. .+++... .-.-++|+.|+.+.|.++...+ -..-.+|++++
T Consensus 183 ldLr~N~~~~~---dls~~~-----~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~d 247 (1081)
T KOG0618|consen 183 LDLRYNEMEVL---DLSNLA-----NLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDV---HPVPLNLQYLD 247 (1081)
T ss_pred eecccchhhhh---hhhhcc-----chhhhhhhhcccceE----EecCcchheeeeccCcceeecc---ccccccceeee
Confidence 66666665511 122222 333333 2222110 0122456666666666553211 12234566666
Q ss_pred ccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccC
Q 037514 317 LSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNN 396 (636)
Q Consensus 317 L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n 396 (636)
++.|. +. ..+.....+.+|+.+.+..|.+. .+|..+....+|+.|.+..|.+....| ...+. ..|++|++..|
T Consensus 248 is~n~--l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~-~le~~--~sL~tLdL~~N 320 (1081)
T KOG0618|consen 248 ISHNN--LS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPP-FLEGL--KSLRTLDLQSN 320 (1081)
T ss_pred cchhh--hh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCC-ccccc--ceeeeeeehhc
Confidence 66652 22 22244445566666666666663 455555556666666666666654333 22223 56666666666
Q ss_pred cCCccCCcccCCCC-CCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchh
Q 037514 397 KFFGGILSSLCSLP-SLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIK 475 (636)
Q Consensus 397 ~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 475 (636)
++....+..+.... .|..++.+.|.+.......=...+.|+.|++.+|.++...-..+.+.++|+.|+|++|++...+.
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa 400 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA 400 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence 66433332222222 24555555555542221112234456666666666665443346666666666666666654443
Q ss_pred hhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccc
Q 037514 476 ELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENI 555 (636)
Q Consensus 476 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 555 (636)
..+..+ +.|+.|+||||+++ .+|..+..+..|+.|...+|++. ..| .+..++.|+.+|++.|.++......-
T Consensus 401 s~~~kl-----e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 401 SKLRKL-----EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred HHHhch-----HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence 333332 34466666666666 55666666666666666666665 455 45666666666666666655422222
Q ss_pred cCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514 556 GQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSS 594 (636)
Q Consensus 556 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n 594 (636)
..-+.|++||++||... .+....|..+..+..+++.-+
T Consensus 473 ~p~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 473 LPSPNLKYLDLSGNTRL-VFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CCCcccceeeccCCccc-ccchhhhHHhhhhhheecccC
Confidence 22256666666666543 344445555555555555544
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=9.9e-34 Score=280.94 Aligned_cols=373 Identities=24% Similarity=0.349 Sum_probs=233.4
Q ss_pred CCCCCCEEeCCCCCCC-CCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChh
Q 037514 76 SLKKLKLLDLSESSFS-GMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWL 154 (636)
Q Consensus 76 ~l~~L~~L~Ls~~~i~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 154 (636)
-++.++-.|+++|.++ +..|.+..+++++++|.|...++..++.+ ++.+.+|++|.+++|++..+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeE----------L~~lqkLEHLs~~HN~L~~vh--- 71 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEE----------LSRLQKLEHLSMAHNQLISVH--- 71 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHH----------HHHHhhhhhhhhhhhhhHhhh---
Confidence 4568899999999999 67899999999999999999888776654 888999999999999988874
Q ss_pred hhhCCCCCCCEEEccCCcCC-CCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCC
Q 037514 155 QVVNELPSLVELHLSNCQLN-FPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKM 233 (636)
Q Consensus 155 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l 233 (636)
+.++.+|.|+.+.+.+|++. .-+|..+-.+..|++|||++|++.. .|..+...+++-.|+|++|+|. .+|.-.+-++
T Consensus 72 GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinL 149 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINL 149 (1255)
T ss_pred hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccc-cCCchHHHhh
Confidence 47888899999999999874 2355566678888888888888877 7888888888888888888887 7775447777
Q ss_pred CCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCC
Q 037514 234 CNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLN 313 (636)
Q Consensus 234 ~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~ 313 (636)
+.|-.|||++|++.. +|..+..+..|++|+|++|.+.-. ...-+..+++|+
T Consensus 150 tDLLfLDLS~NrLe~----------------------------LPPQ~RRL~~LqtL~Ls~NPL~hf-QLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLEM----------------------------LPPQIRRLSMLQTLKLSNNPLNHF-QLRQLPSMTSLS 200 (1255)
T ss_pred HhHhhhccccchhhh----------------------------cCHHHHHHhhhhhhhcCCChhhHH-HHhcCccchhhh
Confidence 777788888777663 233344445677777777765421 000122233333
Q ss_pred EEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEEC
Q 037514 314 SLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDL 393 (636)
Q Consensus 314 ~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l 393 (636)
.|.+++.+ .-...+|..+..+.+|..+|++.|.+. ..|+
T Consensus 201 vLhms~Tq-------------------------RTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe--------------- 239 (1255)
T KOG0444|consen 201 VLHMSNTQ-------------------------RTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE--------------- 239 (1255)
T ss_pred hhhccccc-------------------------chhhcCCCchhhhhhhhhccccccCCC-cchH---------------
Confidence 33333321 001134444444555555555555443 3333
Q ss_pred ccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCC-C
Q 037514 394 SNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT-G 472 (636)
Q Consensus 394 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~ 472 (636)
.+.++++|+.|+|++|+++ .+........+|+.|+++.|+++..+. ++..+++|+.|.+.+|+++ .
T Consensus 240 -----------cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~-avcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 240 -----------CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPD-AVCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred -----------HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchH-HHhhhHHHHHHHhccCccccc
Confidence 4444444444444444444 222223333445555555555544332 3455555555555555543 1
Q ss_pred chhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcccccccc
Q 037514 473 EIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIIS 552 (636)
Q Consensus 473 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 552 (636)
-+|..++.+ ..|+.+..++|.+. .+|+++..|..|+.|.|++|++. .+|+++.-++.|+.||+..|.-.-.+|
T Consensus 307 GiPSGIGKL-----~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 307 GIPSGIGKL-----IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred CCccchhhh-----hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 123333322 23355555555555 56666666666666666666665 566666666666666666665444444
Q ss_pred c
Q 037514 553 E 553 (636)
Q Consensus 553 ~ 553 (636)
.
T Consensus 380 K 380 (1255)
T KOG0444|consen 380 K 380 (1255)
T ss_pred C
Confidence 3
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.5e-31 Score=265.53 Aligned_cols=372 Identities=23% Similarity=0.285 Sum_probs=219.1
Q ss_pred CCEEEccCCcCC-CCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEc
Q 037514 163 LVELHLSNCQLN-FPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDL 241 (636)
Q Consensus 163 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L 241 (636)
.+-.|+++|.++ +..|.....+++++-|.|...++.. +|+.++.+.+|++|.+++|++... . ..++.++.|+.+.+
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~~v-h-GELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLISV-H-GELSDLPRLRSVIV 85 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhHhh-h-hhhccchhhHHHhh
Confidence 334444444444 2344445555555555555555544 555666666666666666655421 1 11444555555555
Q ss_pred ccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCC
Q 037514 242 AINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSN 321 (636)
Q Consensus 242 ~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~ 321 (636)
..|++.. .-+|..+..+..|+.|||++|++.. +|. .+..-.++-.|+|++|
T Consensus 86 R~N~LKn--------------------------sGiP~diF~l~dLt~lDLShNqL~E-vP~-~LE~AKn~iVLNLS~N- 136 (1255)
T KOG0444|consen 86 RDNNLKN--------------------------SGIPTDIFRLKDLTILDLSHNQLRE-VPT-NLEYAKNSIVLNLSYN- 136 (1255)
T ss_pred hcccccc--------------------------CCCCchhcccccceeeecchhhhhh-cch-hhhhhcCcEEEEcccC-
Confidence 5554432 1234444555566666666666654 444 3444444444444433
Q ss_pred CccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCcc
Q 037514 322 KSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGG 401 (636)
Q Consensus 322 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 401 (636)
+|..+....+.++..|-.||+++|++...+|. ...+ ..|++|++++|.+...
T Consensus 137 -------------------------~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL--~~LqtL~Ls~NPL~hf 188 (1255)
T KOG0444|consen 137 -------------------------NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRL--SMLQTLKLSNNPLNHF 188 (1255)
T ss_pred -------------------------ccccCCchHHHhhHhHhhhccccchhhhcCHH-HHHH--hhhhhhhcCCChhhHH
Confidence 33333333445555555666666665543333 3333 4566666666666544
Q ss_pred CCcccCCCCCCcEEEccCCcCC-cccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHh
Q 037514 402 ILSSLCSLPSLYWLRLGGNNLS-GELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNA 480 (636)
Q Consensus 402 ~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 480 (636)
....+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|++.|.+...+ +.+..+++|+.|++++|+++. .......
T Consensus 189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP-ecly~l~~LrrLNLS~N~ite-L~~~~~~ 266 (1255)
T KOG0444|consen 189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP-ECLYKLRNLRRLNLSGNKITE-LNMTEGE 266 (1255)
T ss_pred HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch-HHHhhhhhhheeccCcCceee-eeccHHH
Confidence 4444555666777777765533 335666777777777777777776543 356677777777777777762 2222222
Q ss_pred hhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccC-CccChhhhCCCCCCeEeCcCccccccccccccCCC
Q 037514 481 FSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFL-GSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLS 559 (636)
Q Consensus 481 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 559 (636)
+ .+|++|++|.|+++ .+|.++..++.|+.|.+.+|++. .-+|+.++.+.+|+++..++|.+ ...|+.+..+.
T Consensus 267 W-----~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC~ 339 (1255)
T KOG0444|consen 267 W-----ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRCV 339 (1255)
T ss_pred H-----hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc-ccCchhhhhhH
Confidence 2 34577777777777 67777777777888877777764 24677777777787777777766 34677777778
Q ss_pred CCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccccccc
Q 037514 560 EPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHD 605 (636)
Q Consensus 560 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~ 605 (636)
.|+.|.|+.|++. .+|+. ..-++.|+.||+..|+..+..+-..+
T Consensus 340 kL~kL~L~~NrLi-TLPea-IHlL~~l~vLDlreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 340 KLQKLKLDHNRLI-TLPEA-IHLLPDLKVLDLRENPNLVMPPKPND 383 (1255)
T ss_pred HHHHhccccccee-echhh-hhhcCCcceeeccCCcCccCCCCcch
Confidence 8888888888777 46765 55677778888887766555544333
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.94 E-value=3.4e-29 Score=236.55 Aligned_cols=164 Identities=21% Similarity=0.267 Sum_probs=137.9
Q ss_pred HhhcCCcccCCC---CCcccCHHhHHHHHhccCCCCCCCCCCCCCcccCccccCCCCCCEEeCCCCCCCCCCCccccCCC
Q 037514 26 AIGIGSNYDCGN---FSIRCTEREREALLKFKGLIDPSARLSSWKSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLS 102 (636)
Q Consensus 26 ~~~~~~~~~~~~---~~~~c~~~~~~~l~~~~~l~~~~~~~~~w~~~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~ 102 (636)
+.+++.+|.|.+ ..|.|..++.. .+|..+. +....++|..|+|+.+.|.+|+.++
T Consensus 34 ~~~CP~pC~Cs~~~g~~VdCr~~GL~--------------------eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~ 91 (498)
T KOG4237|consen 34 ASACPAPCTCSDVEGGIVDCRGKGLT--------------------EVPANLP--PETVEIRLDQNQISSIPPGAFKTLH 91 (498)
T ss_pred cccCCCCcccCCCCCceEEccCCCcc--------------------cCcccCC--CcceEEEeccCCcccCChhhccchh
Confidence 456777788888 77888765432 2332222 2678899999999988889999999
Q ss_pred CCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCC-ccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCc
Q 037514 103 NLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEG-MKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPF 181 (636)
Q Consensus 103 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 181 (636)
+||.||||+|+|+.+.+.+ |.++++|..|-+.+ |+|+.++. +.|+++..|+.|.+.-|++..+...+|
T Consensus 92 ~LRrLdLS~N~Is~I~p~A---------F~GL~~l~~Lvlyg~NkI~~l~k--~~F~gL~slqrLllNan~i~Cir~~al 160 (498)
T KOG4237|consen 92 RLRRLDLSKNNISFIAPDA---------FKGLASLLSLVLYGNNKITDLPK--GAFGGLSSLQRLLLNANHINCIRQDAL 160 (498)
T ss_pred hhceecccccchhhcChHh---------hhhhHhhhHHHhhcCCchhhhhh--hHhhhHHHHHHHhcChhhhcchhHHHH
Confidence 9999999999999988765 99999988888777 99999976 799999999999999999999999999
Q ss_pred cCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCC
Q 037514 182 LNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLS 222 (636)
Q Consensus 182 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~ 222 (636)
..+++|..|.+.+|.+..+.-..|..+.+++++.+..|.+.
T Consensus 161 ~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i 201 (498)
T KOG4237|consen 161 RDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI 201 (498)
T ss_pred HHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc
Confidence 99999999999999998854448889999999999888754
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.9e-23 Score=242.58 Aligned_cols=243 Identities=22% Similarity=0.229 Sum_probs=104.0
Q ss_pred cCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCC
Q 037514 282 GQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQAS 361 (636)
Q Consensus 282 ~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 361 (636)
+.+++|++|++++|.....+|. .+.++++|+.|++++| .....++... .+.+|+.|++++|.....+|.. ..+
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c--~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~n 726 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRC--ENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STN 726 (1153)
T ss_pred ccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCC--CCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCC
Confidence 3445566666665554444554 4555666666666555 2222222222 3445555555555433333321 234
Q ss_pred cceeccccccCCCcchhhHHhhcCCCccEEECccCcCCc-------cCCcccCCCCCCcEEEccCCcCCcccCCCCCCCC
Q 037514 362 VFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFG-------GILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCS 434 (636)
Q Consensus 362 L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 434 (636)
|++|++++|.+.. +|..+ .+ ++|++|++.++.... ..+......++|+.|++++|...+.+|..+.+++
T Consensus 727 L~~L~L~~n~i~~-lP~~~-~l--~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~ 802 (1153)
T PLN03210 727 ISWLDLDETAIEE-FPSNL-RL--ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH 802 (1153)
T ss_pred cCeeecCCCcccc-ccccc-cc--cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCC
Confidence 4555555554432 22221 11 444444444422110 0011111223445555555444444444444555
Q ss_pred CCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCC
Q 037514 435 RLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLE 514 (636)
Q Consensus 435 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 514 (636)
+|+.|++++|...+..|..+ .+++|+.|++++|.....+|.. ..+|+.|++++|.++ .+|..+..+++|+
T Consensus 803 ~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~ 872 (1153)
T PLN03210 803 KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--------STNISDLNLSRTGIE-EVPWWIEKFSNLS 872 (1153)
T ss_pred CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--------ccccCEeECCCCCCc-cChHHHhcCCCCC
Confidence 55555555443222222212 3444555555544332222221 133444555544444 3444444444555
Q ss_pred EEeCcCCccCCccChhhhCCCCCCeEeCcCc
Q 037514 515 YLGLSENSFLGSLPTSIGNLSHLRALYLSFN 545 (636)
Q Consensus 515 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n 545 (636)
.|++++|.-...+|..+..+++|+.+++++|
T Consensus 873 ~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 873 FLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred EEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 5555444333334444444444444444444
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.9e-22 Score=234.28 Aligned_cols=307 Identities=21% Similarity=0.205 Sum_probs=166.7
Q ss_pred CCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcc
Q 037514 163 LVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLA 242 (636)
Q Consensus 163 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~ 242 (636)
|+.|.+.++.+.. .|..| ...+|++|++.+|.+.. ++.++..+++|+.|+++++...+.+|+ ++.+++|+.|+++
T Consensus 591 Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~ 665 (1153)
T PLN03210 591 LRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLS 665 (1153)
T ss_pred cEEEEecCCCCCC-CCCcC-CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEec
Confidence 4555554444432 22222 23445555555544443 344444445555555544433223332 3344455555554
Q ss_pred cccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCC
Q 037514 243 INGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNK 322 (636)
Q Consensus 243 ~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~ 322 (636)
+|... ..+|..++.+++|+.|++++|...+.+|.. + ++++|+.|++++|
T Consensus 666 ~c~~L---------------------------~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc-- 714 (1153)
T PLN03210 666 DCSSL---------------------------VELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGC-- 714 (1153)
T ss_pred CCCCc---------------------------cccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCC--
Confidence 44322 234455566667777777776544445542 2 5677777777776
Q ss_pred ccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCC-------CcchhhHHhhcCCCccEEECcc
Q 037514 323 SLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAIS-------DTIPDWFWGVISQKLSVIDLSN 395 (636)
Q Consensus 323 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~-------~~~~~~~~~~~~~~L~~L~ls~ 395 (636)
......+. ...+|++|+++++.+. .+|..+ .+++|++|.+.++... ...+..+... ++|+.|++++
T Consensus 715 ~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~--~sL~~L~Ls~ 787 (1153)
T PLN03210 715 SRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS--PSLTRLFLSD 787 (1153)
T ss_pred CCcccccc---ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcc--ccchheeCCC
Confidence 22222222 1346777777777664 344433 4566666666653321 1111111112 5677777777
Q ss_pred CcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchh
Q 037514 396 NKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIK 475 (636)
Q Consensus 396 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 475 (636)
|.....+|..+..+++|+.|++++|...+.+|..+ .+++|++|++++|......|. ..++|+.|++++|.++ .+|
T Consensus 788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP 862 (1153)
T PLN03210 788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE-EVP 862 (1153)
T ss_pred CCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECCCCCCc-cCh
Confidence 76666667777777777777777765444556554 567777777777654433332 2356777777777775 344
Q ss_pred hhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCc
Q 037514 476 ELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENS 522 (636)
Q Consensus 476 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 522 (636)
..+. .+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 863 ~si~-----~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 863 WWIE-----KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred HHHh-----cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 4333 23566777777754333566666677777777777774
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=3.3e-26 Score=216.48 Aligned_cols=395 Identities=21% Similarity=0.241 Sum_probs=196.4
Q ss_pred CCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcC-CcCCCCCCCCCCCCCCCCCEEE
Q 037514 162 SLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRS-SQLSGSIPKFPPGKMCNLRRLD 240 (636)
Q Consensus 162 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~~l~~L~~L~ 240 (636)
.-..++|..|+|+.+.+.+|+.+++|+.|||++|.|+.+-|.+|.++++|.+|-+.+ |+|+ .+|...|+++..++.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 456777778888877778888888888888888888887788888887776665555 7776 66666688888888888
Q ss_pred cccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCC
Q 037514 241 LAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSS 320 (636)
Q Consensus 241 L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n 320 (636)
+.-|++.....+.|..++ ++..|.+..|.+.. ++...|..+..++.+.+..|
T Consensus 147 lNan~i~Cir~~al~dL~---------------------------~l~lLslyDn~~q~-i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLP---------------------------SLSLLSLYDNKIQS-ICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred cChhhhcchhHHHHHHhh---------------------------hcchhcccchhhhh-hccccccchhccchHhhhcC
Confidence 887777776666666555 44445555554443 33334555555555555544
Q ss_pred CCccE----------EecCCCCCCCCCccEEEccCCCCCcCCChhhcCC-CCcceeccccccCCCcch-hhHHhhcCCCc
Q 037514 321 NKSLV----------FTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQ-ASVFKLTLSNAAISDTIP-DWFWGVISQKL 388 (636)
Q Consensus 321 ~~~~~----------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~L~~n~~~~~~~-~~~~~~~~~~L 388 (636)
+.... ...+.+++......-..+.+..+....+..+... +.+..--.+.+...+..| ..|..+ ++|
T Consensus 199 p~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L--~~L 276 (498)
T KOG4237|consen 199 PFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL--PNL 276 (498)
T ss_pred ccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc--ccc
Confidence 21000 0011111111111112222222221111111100 011100111111111212 223333 445
Q ss_pred cEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCC
Q 037514 389 SVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYN 468 (636)
Q Consensus 389 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 468 (636)
+.|++++|+++++-+.+|.....+++|.|..|++.......|.++..|+.|+|++|+|+...|.+|..+..|.+|.+-.|
T Consensus 277 ~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 277 RKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred eEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 55555555554444444444445555555555444333344444455555555555555544444544445555554444
Q ss_pred cCCCc-----hhhhHHh------hhcCCCCcccEEEcccCcCCCC---Cchhh---------cCCCCCCEEeCcCCccCC
Q 037514 469 HITGE-----IKELTNA------FSACNVSTLETLDLASNKLGGN---LPDSL---------GNLLCLEYLGLSENSFLG 525 (636)
Q Consensus 469 ~l~~~-----~~~~~~~------~~~~~~~~L~~L~Ls~n~l~~~---~~~~l---------~~l~~L~~L~Ls~n~~~~ 525 (636)
++.-. .-+.+.. -.-.....++.+.+++..+... .|+.. ..++.+....=-.|....
T Consensus 357 p~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk 436 (498)
T KOG4237|consen 357 PFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK 436 (498)
T ss_pred cccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh
Confidence 33200 0000000 0000112334444444433311 11111 122233322222222333
Q ss_pred ccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514 526 SLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSS 594 (636)
Q Consensus 526 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n 594 (636)
.+|..+. ..-.++++.+|.++.+..+ .+.+| .+|+++|++. .+....|.+++.|..|.|++|
T Consensus 437 ~lp~~iP--~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~-~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 437 LLPRGIP--VDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRIS-SLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hcCCCCC--chhHHHhcccchhcccCHH---HHhhh-hcccccCcee-hhhcccccchhhhheeEEecC
Confidence 4454332 2456778888887765444 45666 7888888887 566677888888888888775
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=7.5e-20 Score=197.28 Aligned_cols=135 Identities=23% Similarity=0.297 Sum_probs=87.2
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhh
Q 037514 78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVV 157 (636)
Q Consensus 78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 157 (636)
..-..|++++++++ .+|..+. ++|+.|++++|+++.++. ..++|++|++++|+++.+|..
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~-------------lp~~Lk~LdLs~N~LtsLP~l---- 260 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA-------------LPPELRTLEVSGNQLTSLPVL---- 260 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC-------------CCCCCcEEEecCCccCcccCc----
Confidence 45678888888887 5777665 478888888888887542 136778888888887776531
Q ss_pred CCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCC
Q 037514 158 NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLR 237 (636)
Q Consensus 158 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 237 (636)
.++|+.|++++|.+... |.. .++|+.|++++|+++. +|.. .++|++|++++|++. .+|..+ .+|+
T Consensus 261 --p~sL~~L~Ls~N~L~~L-p~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~-~Lp~lp----~~L~ 325 (788)
T PRK15387 261 --PPGLLELSIFSNPLTHL-PAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPALP----SELC 325 (788)
T ss_pred --ccccceeeccCCchhhh-hhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCccc-cCCCCc----cccc
Confidence 35677777777776542 221 2456677777777765 4432 356777777777766 344321 3455
Q ss_pred EEEcccccCc
Q 037514 238 RLDLAINGFS 247 (636)
Q Consensus 238 ~L~L~~n~~~ 247 (636)
.|++++|.++
T Consensus 326 ~L~Ls~N~L~ 335 (788)
T PRK15387 326 KLWAYNNQLT 335 (788)
T ss_pred ccccccCccc
Confidence 6666666554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=1.4e-19 Score=195.22 Aligned_cols=63 Identities=27% Similarity=0.271 Sum_probs=30.4
Q ss_pred cccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccc
Q 037514 488 TLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENI 555 (636)
Q Consensus 488 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 555 (636)
+|+.|++++|+++ .+|.. ..+|+.|++++|++. .+|..+.++++|+.|++++|++++..+..+
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 3455555555554 23322 123445555555554 445555555555555555555555444433
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=4.8e-19 Score=179.27 Aligned_cols=208 Identities=26% Similarity=0.291 Sum_probs=125.1
Q ss_pred CCccEEECccCcCCccCCcccCCCC---CCcEEEccCCcCCc----ccCCCCCCC-CCCCEEECCCCCCCCC----cchh
Q 037514 386 QKLSVIDLSNNKFFGGILSSLCSLP---SLYWLRLGGNNLSG----ELSTSLPDC-SRLTALDIGGNRFLQL----PSTS 453 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~~l~---~L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~ 453 (636)
++|++|++++|.+.+..+..+..+. +|++|++++|++.+ .+...+..+ ++|++|++++|.+++. ....
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 4555555555555433333333222 36666666666552 122233444 6777777777777632 2234
Q ss_pred hcCCCCCCeEeCcCCcCCCchhhhH-HhhhcCCCCcccEEEcccCcCCCC----CchhhcCCCCCCEEeCcCCccCCccC
Q 037514 454 MGNLCNLHSLDISYNHITGEIKELT-NAFSACNVSTLETLDLASNKLGGN----LPDSLGNLLCLEYLGLSENSFLGSLP 528 (636)
Q Consensus 454 ~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~~~p 528 (636)
+..+++|++|++++|.+++.....+ ..+... ++|+.|++++|.+++. +...+..+++|++|++++|.+.+...
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~--~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKAN--CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhC--CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 5566778888888887764322222 222222 6778888888877633 23445677888888888888765333
Q ss_pred hhhh-----CCCCCCeEeCcCccccc----cccccccCCCCCCEEECcCCcceeecCh---hhhcCC-CCCCeeeCCCCC
Q 037514 529 TSIG-----NLSHLRALYLSFNVMSR----IISENIGQLSEPYMLDLYGNSWEGVITE---KHFRNL-SGLDYLTISSSN 595 (636)
Q Consensus 529 ~~l~-----~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l-~~L~~L~ls~n~ 595 (636)
..+. ..+.|++|++++|.++. .+...+..++.|+++++++|.+...-.. .++... +.|+++++.+|+
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 3222 23688888888888862 2334556678888999999888743111 123444 788888888873
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=1.2e-18 Score=176.30 Aligned_cols=191 Identities=22% Similarity=0.212 Sum_probs=94.6
Q ss_pred ccCCCCCCcEEEccCCcCCcccCCCCCCCC---CCCEEECCCCCCCCC----cchhhcCC-CCCCeEeCcCCcCCCchhh
Q 037514 405 SLCSLPSLYWLRLGGNNLSGELSTSLPDCS---RLTALDIGGNRFLQL----PSTSMGNL-CNLHSLDISYNHITGEIKE 476 (636)
Q Consensus 405 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l~~~~~~ 476 (636)
.+..+++|++|++++|.+.+..+..+..+. +|++|++++|++.+. ....+..+ ++|+.|++++|.+++....
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 344456666666666666533333332222 366666666666531 11223344 5666666666666543222
Q ss_pred hHH-hhhcCCCCcccEEEcccCcCCCC----CchhhcCCCCCCEEeCcCCccCCc----cChhhhCCCCCCeEeCcCccc
Q 037514 477 LTN-AFSACNVSTLETLDLASNKLGGN----LPDSLGNLLCLEYLGLSENSFLGS----LPTSIGNLSHLRALYLSFNVM 547 (636)
Q Consensus 477 ~~~-~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~l 547 (636)
.+. .+.. ++.|++|++++|.+++. ++..+..+++|+.|++++|.+.+. ++..+..+++|++|++++|.+
T Consensus 156 ~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 156 ALAKALRA--NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHh--CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 221 1221 24556666666666532 223344445666666666665432 223344556666666666666
Q ss_pred ccccccccc-----CCCCCCEEECcCCcceeecCh---hhhcCCCCCCeeeCCCCCCC
Q 037514 548 SRIISENIG-----QLSEPYMLDLYGNSWEGVITE---KHFRNLSGLDYLTISSSNSS 597 (636)
Q Consensus 548 ~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~ls~n~~~ 597 (636)
++.....+. ..+.|+.|++++|.++..... ..+..+++|+++++++|.+.
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 542222211 135666666666655411110 12344456666666666554
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.8e-17 Score=180.17 Aligned_cols=100 Identities=32% Similarity=0.439 Sum_probs=45.8
Q ss_pred CCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcc
Q 037514 410 PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTL 489 (636)
Q Consensus 410 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L 489 (636)
++|+.|++++|.+++ +|..+. ++|+.|++++|+++.++. .+ .++|++|++++|+++.. |..+. .+|
T Consensus 325 ~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~-~l--p~~L~~LdLs~N~Lt~L-P~~l~-------~sL 390 (754)
T PRK15370 325 PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPE-TL--PPTITTLDVSRNALTNL-PENLP-------AAL 390 (754)
T ss_pred ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCCh-hh--cCCcCEEECCCCcCCCC-CHhHH-------HHH
Confidence 345555555555542 333332 455555555555554322 12 23555555555555532 22221 134
Q ss_pred cEEEcccCcCCCCCchhh----cCCCCCCEEeCcCCccC
Q 037514 490 ETLDLASNKLGGNLPDSL----GNLLCLEYLGLSENSFL 524 (636)
Q Consensus 490 ~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~Ls~n~~~ 524 (636)
+.|++++|++. .+|..+ ..++.+..|++.+|++.
T Consensus 391 ~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 391 QIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 55555555555 333322 22345555555555554
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=2.9e-17 Score=178.64 Aligned_cols=247 Identities=23% Similarity=0.336 Sum_probs=142.3
Q ss_pred CCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCccee
Q 037514 286 ELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKL 365 (636)
Q Consensus 286 ~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 365 (636)
+...|++++++++. +|. .+ .++++.|++++|.+. .++..+. .+|++|++++|.+.. +|..+. .+|+.|
T Consensus 179 ~~~~L~L~~~~Lts-LP~-~I--p~~L~~L~Ls~N~Lt---sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L 246 (754)
T PRK15370 179 NKTELRLKILGLTT-IPA-CI--PEQITTLILDNNELK---SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEM 246 (754)
T ss_pred CceEEEeCCCCcCc-CCc-cc--ccCCcEEEecCCCCC---cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEE
Confidence 34556666666554 443 12 235666666666322 1222221 356666666666652 344332 357777
Q ss_pred ccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCC
Q 037514 366 TLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNR 445 (636)
Q Consensus 366 ~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 445 (636)
++++|.+. .+|..+. .+|+.|++++|+++. +|..+. ++|+.|++++|++++ +|..+. ++|++|++++|.
T Consensus 247 ~Ls~N~L~-~LP~~l~----s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~ 315 (754)
T PRK15370 247 ELSINRIT-ELPERLP----SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNS 315 (754)
T ss_pred ECcCCccC-cCChhHh----CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCc
Confidence 77777766 3344332 467777777777753 444332 467777777777763 444332 367777777777
Q ss_pred CCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCC
Q 037514 446 FLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLG 525 (636)
Q Consensus 446 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~ 525 (636)
++.++.. + .++|+.|++++|.+++ +|..+ .++|+.|++++|+++ .+|..+. ++|+.|++++|.+.
T Consensus 316 Lt~LP~~-l--~~sL~~L~Ls~N~Lt~-LP~~l-------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt- 380 (754)
T PRK15370 316 LTALPET-L--PPGLKTLEAGENALTS-LPASL-------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT- 380 (754)
T ss_pred cccCCcc-c--cccceeccccCCcccc-CChhh-------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-
Confidence 7765432 1 2567777777777764 33322 146677777777776 4555443 56777777777776
Q ss_pred ccChhhhCCCCCCeEeCcCcccccc---ccccccCCCCCCEEECcCCcce
Q 037514 526 SLPTSIGNLSHLRALYLSFNVMSRI---ISENIGQLSEPYMLDLYGNSWE 572 (636)
Q Consensus 526 ~~p~~l~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~ 572 (636)
.+|..+. ..|+.|++++|++... +|..+..++.+..+++.+|++.
T Consensus 381 ~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 381 NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4555443 3577777777777643 1222334466777777777765
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=3.7e-19 Score=149.68 Aligned_cols=161 Identities=27% Similarity=0.438 Sum_probs=144.1
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCCh
Q 037514 74 VYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNW 153 (636)
Q Consensus 74 ~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 153 (636)
+.++++++.|.||+|+++ .+|..++.+.+|+.|++++|+|+.++.. ++.+++|+.|+++-|++...|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~----------issl~klr~lnvgmnrl~~lp-- 95 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTS----------ISSLPKLRILNVGMNRLNILP-- 95 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChh----------hhhchhhhheecchhhhhcCc--
Confidence 446789999999999998 6777899999999999999999998875 999999999999999998875
Q ss_pred hhhhCCCCCCCEEEccCCcCCC-CCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCC
Q 037514 154 LQVVNELPSLVELHLSNCQLNF-PQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGK 232 (636)
Q Consensus 154 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 232 (636)
..|+.+|.|++|||.+|++.. ..|..|-.++.|+.|+|++|.+.- +|..++++++|+.|.+++|.+. .+|. .++.
T Consensus 96 -rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll-~lpk-eig~ 171 (264)
T KOG0617|consen 96 -RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLL-SLPK-EIGD 171 (264)
T ss_pred -cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchh-hCcH-HHHH
Confidence 489999999999999999864 678888899999999999999986 8889999999999999999988 6664 4899
Q ss_pred CCCCCEEEcccccCccccc
Q 037514 233 MCNLRRLDLAINGFSGEKE 251 (636)
Q Consensus 233 l~~L~~L~L~~n~~~~~~~ 251 (636)
++.|++|++.+|+++-..|
T Consensus 172 lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred HHHHHHHhcccceeeecCh
Confidence 9999999999999885444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=9.9e-17 Score=135.19 Aligned_cols=181 Identities=31% Similarity=0.506 Sum_probs=128.9
Q ss_pred CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514 386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI 465 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 465 (636)
..++.|.+++|+++. +|..++.+.+|+.|++.+|++. .+|..++.+++|+.|+++-|++...+. .|+.++.|+.||+
T Consensus 33 s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lpr-gfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPR-GFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCcc-ccCCCchhhhhhc
Confidence 456666666776643 3445667777777777777775 667777777777777777777765443 4777777777777
Q ss_pred cCCcCCC-chhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcC
Q 037514 466 SYNHITG-EIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSF 544 (636)
Q Consensus 466 ~~n~l~~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~ 544 (636)
++|++.. ..|..+..+ ..|+.|++++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.++.|++|++.+
T Consensus 110 tynnl~e~~lpgnff~m-----~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYM-----TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred cccccccccCCcchhHH-----HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 7777653 334444333 45588888888887 78888999999999999999988 7899999999999999999
Q ss_pred ccccccccccccCCC---CCCEEECcCCcceeecCh
Q 037514 545 NVMSRIISENIGQLS---EPYMLDLYGNSWEGVITE 577 (636)
Q Consensus 545 n~l~~~~~~~~~~l~---~L~~L~L~~n~l~~~~~~ 577 (636)
|+++-..|+ ++++. +=+.+.+.+|++...|.+
T Consensus 183 nrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 183 NRLTVLPPE-LANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred ceeeecChh-hhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 999876554 44332 223455667776654444
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=3.8e-12 Score=113.08 Aligned_cols=37 Identities=35% Similarity=0.578 Sum_probs=4.7
Q ss_pred CCCEEeCCCCCCCCCCCcccc-CCCCCCEEeCcCCCCCcc
Q 037514 79 KLKLLDLSESSFSGMLPPNIG-NLSNLQYLDLSYQNLKEY 117 (636)
Q Consensus 79 ~L~~L~Ls~~~i~~~~~~~l~-~l~~L~~L~Ls~n~l~~~ 117 (636)
+++.|+|++|.|+.+ +.++ .+.+|+.|++++|.|+.+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l 57 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL 57 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc
Confidence 344444444444422 1233 244444444444444443
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=4.3e-12 Score=119.87 Aligned_cols=250 Identities=18% Similarity=0.191 Sum_probs=125.5
Q ss_pred cccCCCCCCEEEccCCcCccccCh---hhhcCCCCCCEEEccCCCCccEEecC-----------CCCCCCCCccEEEccC
Q 037514 280 NIGQLAELVALNLYRNSWKGIITE---NHFQNLTKLNSLYLSSSNKSLVFTMR-----------SDWIPPFSLRQMAIND 345 (636)
Q Consensus 280 ~l~~l~~L~~L~l~~n~~~~~i~~---~~~~~l~~L~~L~L~~n~~~~~~~~~-----------~~~~~~~~L~~L~l~~ 345 (636)
.+..+..++.+++++|.+...... ..+.+.+.|+..++++- +++... +.+..+++|+++++++
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~---ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM---FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh---hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 344567899999999988754221 25667778888888764 222111 1223444666666666
Q ss_pred CCCCcCCCh----hhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCc
Q 037514 346 CQLGSAFPS----WLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNN 421 (636)
Q Consensus 346 ~~~~~~~~~----~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 421 (636)
|-+....+. .+.++..|++|.|.+|.+.......+... |..|. .......-+.|+.+...+|+
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~a----l~~l~---------~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRA----LFELA---------VNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHH----HHHHH---------HHhccCCCcceEEEEeeccc
Confidence 666544333 23455666666666665543322222211 11111 00112233455555555555
Q ss_pred CCcc----cCCCCCCCCCCCEEECCCCCCCCC----cchhhcCCCCCCeEeCcCCcCCCchhhhHHh-hhcCCCCcccEE
Q 037514 422 LSGE----LSTSLPDCSRLTALDIGGNRFLQL----PSTSMGNLCNLHSLDISYNHITGEIKELTNA-FSACNVSTLETL 492 (636)
Q Consensus 422 l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~~~~~L~~L 492 (636)
+... +...|...+.|+++.++.|.|... ....+..++.|+.|||.+|-++......+.. ++. ++.|+.|
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s--~~~L~El 246 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS--WPHLREL 246 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc--cchheee
Confidence 4421 222344445566666666655421 1233455666666666666555333322221 222 2455666
Q ss_pred EcccCcCCCCCchhh-----cCCCCCCEEeCcCCccCCc----cChhhhCCCCCCeEeCcCccc
Q 037514 493 DLASNKLGGNLPDSL-----GNLLCLEYLGLSENSFLGS----LPTSIGNLSHLRALYLSFNVM 547 (636)
Q Consensus 493 ~Ls~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~l 547 (636)
++++|.+...-...| ...++|+.|.+.+|.|+.. +..++...+.|+.|+|++|++
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 666666553322221 2345666666666665431 122334456666666666666
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=2.7e-11 Score=107.62 Aligned_cols=108 Identities=27% Similarity=0.329 Sum_probs=30.5
Q ss_pred CCCCCCEEecCCccCCCCCChhhhhC-CCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccc-cCCCC
Q 037514 133 DLSSSRYLHLEGMKLSKVTNWLQVVN-ELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWL-FNIST 210 (636)
Q Consensus 133 ~l~~L~~L~L~~n~l~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l-~~l~~ 210 (636)
+..++++|+|++|.|+.+. .++ .+.+|++|++++|.++... .+..+++|++|++++|.|+. +.+.+ ..+++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie----~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE----NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc----chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 3334445555555554442 232 3455555566665555432 34556666666666666665 33333 24666
Q ss_pred CCEEeCcCCcCCCCCCCCC-CCCCCCCCEEEcccccCcc
Q 037514 211 LVTLNLRSSQLSGSIPKFP-PGKMCNLRRLDLAINGFSG 248 (636)
Q Consensus 211 L~~L~L~~n~l~~~~p~~~-~~~l~~L~~L~L~~n~~~~ 248 (636)
|++|++++|++. .+.++. +..+++|+.|++.+|++..
T Consensus 90 L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 90 LQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCCcccc
Confidence 777777766665 333322 5667777777777777653
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=2.1e-11 Score=115.29 Aligned_cols=184 Identities=24% Similarity=0.232 Sum_probs=95.2
Q ss_pred CCccEEECccCcCCccCCc----ccCCCCCCcEEEccCCcCCcc-------------cCCCCCCCCCCCEEECCCCCCCC
Q 037514 386 QKLSVIDLSNNKFFGGILS----SLCSLPSLYWLRLGGNNLSGE-------------LSTSLPDCSRLTALDIGGNRFLQ 448 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~L~~n~l~~ 448 (636)
+.|++++||+|.+....+. .+.++..|++|+|.+|.+... .......-+.|+++...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 4555566666555332222 223455666666666654311 11123344567777777776654
Q ss_pred Cc----chhhcCCCCCCeEeCcCCcCCCchhhh-HHhhhcCCCCcccEEEcccCcCCCC----CchhhcCCCCCCEEeCc
Q 037514 449 LP----STSMGNLCNLHSLDISYNHITGEIKEL-TNAFSACNVSTLETLDLASNKLGGN----LPDSLGNLLCLEYLGLS 519 (636)
Q Consensus 449 ~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls 519 (636)
.. ...|...+.|+.+.++.|.+....... ...+.. ++.|+.|||.+|.++.. +...+..+++|+.|+++
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~--~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH--CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHh--CCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 33 233455566777777776664322211 112222 26666666666666622 23445566666666666
Q ss_pred CCccCCccChhh-----hCCCCCCeEeCcCcccccc----ccccccCCCCCCEEECcCCcc
Q 037514 520 ENSFLGSLPTSI-----GNLSHLRALYLSFNVMSRI----ISENIGQLSEPYMLDLYGNSW 571 (636)
Q Consensus 520 ~n~~~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 571 (636)
+|.+...-..+| ...+.|+++.+.+|.++.. +.......+.|..|+|++|++
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 666544332222 2245666666666666542 122334456666666666665
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.09 E-value=4.2e-10 Score=122.63 Aligned_cols=145 Identities=22% Similarity=0.241 Sum_probs=88.0
Q ss_pred ccCHHhHHHHHhcc-CCCCCCCCCCCCCcccC--c---ccc-C--------CCCCCEEeCCCCCCCCCCCccccCCCCCC
Q 037514 41 RCTEREREALLKFK-GLIDPSARLSSWKSPIP--E---FVY-S--------LKKLKLLDLSESSFSGMLPPNIGNLSNLQ 105 (636)
Q Consensus 41 ~c~~~~~~~l~~~~-~l~~~~~~~~~w~~~~p--~---~~~-~--------l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~ 105 (636)
.+...|..|+..+| .+..+.. .+|.+... . +-+ . ...++.|+|++|.++|.+|..++++++|+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~ 445 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQ 445 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCC
Confidence 45567889999999 7654321 36754321 1 100 0 11356667777777666666666666666
Q ss_pred EEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCC
Q 037514 106 YLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFT 185 (636)
Q Consensus 106 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 185 (636)
+|+|++|.+++. ++..++.+++|++|+|++|++++.+|..+++++
T Consensus 446 ~L~Ls~N~l~g~-----------------------------------iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 446 SINLSGNSIRGN-----------------------------------IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEECCCCcccCc-----------------------------------CChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 666666665532 223556666666666666666666666666677
Q ss_pred CCCEEEccCCcCCcCCCccccCC-CCCCEEeCcCCcCC
Q 037514 186 SLSILELSYDNFNSQIPQWLFNI-STLVTLNLRSSQLS 222 (636)
Q Consensus 186 ~L~~L~L~~n~~~~~~p~~l~~l-~~L~~L~L~~n~l~ 222 (636)
+|++|+|++|.+++.+|..+... .++..+++.+|...
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 77777777777766666666542 35556666666543
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.08 E-value=3.1e-10 Score=123.66 Aligned_cols=107 Identities=30% Similarity=0.487 Sum_probs=79.3
Q ss_pred ccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcC
Q 037514 489 LETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYG 568 (636)
Q Consensus 489 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 568 (636)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CcceeecChhhhcCCCCCCeeeCCCCC
Q 037514 569 NSWEGVITEKHFRNLSGLDYLTISSSN 595 (636)
Q Consensus 569 n~l~~~~~~~~~~~l~~L~~L~ls~n~ 595 (636)
|++.|.+|.........+..+++++|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 777777777543334456677777763
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.1e-11 Score=120.36 Aligned_cols=164 Identities=24% Similarity=0.259 Sum_probs=93.2
Q ss_pred cCCCCCCEEeCCCCCCCCCCC--ccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCC
Q 037514 75 YSLKKLKLLDLSESSFSGMLP--PNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTN 152 (636)
Q Consensus 75 ~~l~~L~~L~Ls~~~i~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 152 (636)
++++.|+...|.++... ..+ .....|++++.||||.|-+....+-.. ....+++|+.|+++.|++....+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~-------i~eqLp~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLK-------IAEQLPSLENLNLSSNRLSNFIS 189 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHH-------HHHhcccchhcccccccccCCcc
Confidence 35667777777776654 222 245567777777777776665443211 14566777777777777655421
Q ss_pred hhhhhCCCCCCCEEEccCCcCCC-CCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCC-C
Q 037514 153 WLQVVNELPSLVELHLSNCQLNF-PQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFP-P 230 (636)
Q Consensus 153 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~ 230 (636)
...-..+++|++|.|+.|.++. .+......+++|+.|+|.+|.....-.....-+..|++|||++|++. ..+..+ .
T Consensus 190 -s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~ 267 (505)
T KOG3207|consen 190 -SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKV 267 (505)
T ss_pred -ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccccc
Confidence 0111246677777777776652 11122345677777777777422222223345566777777777766 444333 5
Q ss_pred CCCCCCCEEEcccccCcc
Q 037514 231 GKMCNLRRLDLAINGFSG 248 (636)
Q Consensus 231 ~~l~~L~~L~L~~n~~~~ 248 (636)
+.++.|+.|+++.+.+..
T Consensus 268 ~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred ccccchhhhhccccCcch
Confidence 666677777766666553
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.6e-11 Score=116.13 Aligned_cols=208 Identities=23% Similarity=0.168 Sum_probs=101.7
Q ss_pred CCCCcceeccccccCCCcch-hhHHhhcCCCccEEECccCcCCccC--CcccCCCCCCcEEEccCCcCCcccCC-CCCCC
Q 037514 358 TQASVFKLTLSNAAISDTIP-DWFWGVISQKLSVIDLSNNKFFGGI--LSSLCSLPSLYWLRLGGNNLSGELST-SLPDC 433 (636)
Q Consensus 358 ~~~~L~~L~L~~n~~~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l 433 (636)
++++|+.+.+.++.+..... .....+ ++++.||++.|-+.... ......+|+|+.|+++.|++..-... .-..+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~--~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKIL--PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhC--CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 34566666666666553332 122223 66777777776554321 12234466777777777665422111 11234
Q ss_pred CCCCEEECCCCCCCCCc-chhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCC-chhhcCCC
Q 037514 434 SRLTALDIGGNRFLQLP-STSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNL-PDSLGNLL 511 (636)
Q Consensus 434 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~ 511 (636)
+.|+.|.++.|.++... ......+|+|+.|++.+|.....-..... .+..|++|||++|++.... -...+.++
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~-----i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK-----ILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh-----hhhHHhhccccCCccccccccccccccc
Confidence 56666666666665321 11234556666666666631111111111 1244566666666655221 12345566
Q ss_pred CCCEEeCcCCccCCc-cChh-----hhCCCCCCeEeCcCccccccc-cccccCCCCCCEEECcCCcce
Q 037514 512 CLEYLGLSENSFLGS-LPTS-----IGNLSHLRALYLSFNVMSRII-SENIGQLSEPYMLDLYGNSWE 572 (636)
Q Consensus 512 ~L~~L~Ls~n~~~~~-~p~~-----l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~ 572 (636)
.|..|+++.|.+... .|+. ...+++|++|+++.|++.+.. -..+..+++|+.|.+..|.+.
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 666666666665431 2221 234456666666666653321 122334455555555555543
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=4.3e-12 Score=126.97 Aligned_cols=195 Identities=28% Similarity=0.375 Sum_probs=128.8
Q ss_pred CCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCE
Q 037514 359 QASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTA 438 (636)
Q Consensus 359 ~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 438 (636)
+..-...|++.|++.. +|..+..+ ..|+.+.+..|.+ ..+|..++.+..|++++++.|++. .+|..+..+ -|+.
T Consensus 74 ltdt~~aDlsrNR~~e-lp~~~~~f--~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSE-LPEEACAF--VSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKV 147 (722)
T ss_pred ccchhhhhcccccccc-CchHHHHH--HHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcC-ccee
Confidence 4445567777777763 44444444 5677777777766 345666777778888888888776 566666554 4777
Q ss_pred EECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeC
Q 037514 439 LDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGL 518 (636)
Q Consensus 439 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 518 (636)
|-+++|+++..+++ ++...+|..||.+.|.+.. +|..+..+ .+|+.|.+..|++. .+|+.+.. -.|..||+
T Consensus 148 li~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~s-lpsql~~l-----~slr~l~vrRn~l~-~lp~El~~-LpLi~lDf 218 (722)
T KOG0532|consen 148 LIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQS-LPSQLGYL-----TSLRDLNVRRNHLE-DLPEELCS-LPLIRLDF 218 (722)
T ss_pred EEEecCccccCCcc-cccchhHHHhhhhhhhhhh-chHHhhhH-----HHHHHHHHhhhhhh-hCCHHHhC-Cceeeeec
Confidence 77888877766553 5677777788888877763 33333333 44577777777777 56666663 34777888
Q ss_pred cCCccCCccChhhhCCCCCCeEeCcCccccccccccc---cCCCCCCEEECcCCc
Q 037514 519 SENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENI---GQLSEPYMLDLYGNS 570 (636)
Q Consensus 519 s~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~ 570 (636)
|.|++. .+|-+|.++++|++|-|.+|.+.. .|..+ +.+.-.++|+...|+
T Consensus 219 ScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 219 SCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 888777 677778888888888888777765 33322 344555667776663
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=3.4e-10 Score=117.90 Aligned_cols=178 Identities=38% Similarity=0.480 Sum_probs=106.1
Q ss_pred CCccEEECccCcCCccCCcccCCCC-CCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEe
Q 037514 386 QKLSVIDLSNNKFFGGILSSLCSLP-SLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLD 464 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 464 (636)
+.++.|++.+|.++... .....+. +|+.|++++|++. .+|..+..++.|+.|++++|++...++. .+..+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCc-cccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhh-hhhhhhhhhee
Confidence 34666666666664432 2333342 6667777777665 4444566667777777777777665542 23566677777
Q ss_pred CcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcC
Q 037514 465 ISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSF 544 (636)
Q Consensus 465 l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~ 544 (636)
+++|++.. +|..... ...|++|.+++|.+. ..+..+..+.++..+.+.+|++. ..+..+..++.++.|++++
T Consensus 193 ls~N~i~~-l~~~~~~-----~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 193 LSGNKISD-LPPEIEL-----LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSN 264 (394)
T ss_pred ccCCcccc-Cchhhhh-----hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccc
Confidence 77777663 2322211 133567777777543 44555666667777777777665 3355566666777777777
Q ss_pred ccccccccccccCCCCCCEEECcCCcceeecC
Q 037514 545 NVMSRIISENIGQLSEPYMLDLYGNSWEGVIT 576 (636)
Q Consensus 545 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 576 (636)
|.++.... +..+.+++.|++++|.+....|
T Consensus 265 n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 265 NQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccccc--ccccCccCEEeccCccccccch
Confidence 77766543 6666777777777776654433
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=5.1e-10 Score=116.60 Aligned_cols=193 Identities=36% Similarity=0.500 Sum_probs=154.5
Q ss_pred EEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCC-CCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCC
Q 037514 390 VIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCS-RLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYN 468 (636)
Q Consensus 390 ~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 468 (636)
.+++..+.+.... ..+..++.++.|++.+|+++ .++....... +|++|++++|.+..++ ..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhh-hhhhccccccccccCCc
Confidence 4666666663322 23445588999999999998 5666666664 9999999999999875 24789999999999999
Q ss_pred cCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcccc
Q 037514 469 HITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMS 548 (636)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~ 548 (636)
+++...+. .. ..+.|+.|++++|++. .+|........|++|.+++|++. ..+..+.++..+..+.+.+|++.
T Consensus 174 ~l~~l~~~-~~-----~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 174 DLSDLPKL-LS-----NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred hhhhhhhh-hh-----hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee
Confidence 99844433 21 2377899999999999 67776666778999999999654 56677899999999999999987
Q ss_pred ccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCC
Q 037514 549 RIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSS 597 (636)
Q Consensus 549 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~ 597 (636)
.. +..+..++.++.|++++|.++ .++. +..+.+++.|++++|...
T Consensus 246 ~~-~~~~~~l~~l~~L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 246 DL-PESIGNLSNLETLDLSNNQIS-SISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ec-cchhccccccceecccccccc-cccc--ccccCccCEEeccCcccc
Confidence 63 577888999999999999998 4655 778999999999998664
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=2.1e-11 Score=112.56 Aligned_cols=134 Identities=25% Similarity=0.272 Sum_probs=106.6
Q ss_pred CCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCc
Q 037514 100 NLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSL 179 (636)
Q Consensus 100 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 179 (636)
....|+.+|||+|.|+.++.+ ++-.+.+|.|++++|.+..+ +.+..+++|+.|||++|.++... .
T Consensus 282 TWq~LtelDLS~N~I~~iDES----------vKL~Pkir~L~lS~N~i~~v----~nLa~L~~L~~LDLS~N~Ls~~~-G 346 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDES----------VKLAPKLRRLILSQNRIRTV----QNLAELPQLQLLDLSGNLLAECV-G 346 (490)
T ss_pred hHhhhhhccccccchhhhhhh----------hhhccceeEEeccccceeee----hhhhhcccceEeecccchhHhhh-h
Confidence 346688999999999887654 77788999999999999887 35788899999999999876432 2
Q ss_pred CccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCC-CCCCCCCCEEEcccccCccccc
Q 037514 180 PFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFP-PGKMCNLRRLDLAINGFSGEKE 251 (636)
Q Consensus 180 ~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~~l~~L~~L~L~~n~~~~~~~ 251 (636)
.-.++-+++.|.|++|.+.. ..++.++.+|..||+++|++. .+.... ++++|.|+++.|.+|.+.+...
T Consensus 347 wh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 347 WHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCccccch
Confidence 33467788999999998876 456788899999999999987 433333 8999999999999999886543
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=6.6e-11 Score=109.30 Aligned_cols=129 Identities=28% Similarity=0.280 Sum_probs=60.5
Q ss_pred CCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCC
Q 037514 433 CSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLC 512 (636)
Q Consensus 433 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~ 512 (636)
.+.|+++|+++|.|+.+.. ...-.|+++.|++++|.++. ++++..+ ++|+.||||+|.++ .+.++=..+-+
T Consensus 283 Wq~LtelDLS~N~I~~iDE-SvKL~Pkir~L~lS~N~i~~-----v~nLa~L--~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDE-SVKLAPKLRRLILSQNRIRT-----VQNLAEL--PQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred Hhhhhhccccccchhhhhh-hhhhccceeEEeccccceee-----ehhhhhc--ccceEeecccchhH-hhhhhHhhhcC
Confidence 3455566666665554432 34445555555555555541 1112211 44555555555554 22223334445
Q ss_pred CCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccc-cccccCCCCCCEEECcCCcce
Q 037514 513 LEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRII-SENIGQLSEPYMLDLYGNSWE 572 (636)
Q Consensus 513 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~ 572 (636)
.+.|.|++|.+.. -..+..+-+|..||+++|+|.... -..++++|-|+.+.|.+|++.
T Consensus 354 IKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 354 IKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred EeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 5555555554431 122444445555555555554331 123445555555555555554
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=1.6e-11 Score=123.03 Aligned_cols=195 Identities=26% Similarity=0.367 Sum_probs=155.4
Q ss_pred CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514 386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI 465 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 465 (636)
.--...|++.|++. ++|..++.+-.|+.+.+..|.+. .+|..+.++..|+++|++.|++...+.. ++.++ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChh-hhcCc-ceeEEE
Confidence 44567888899884 56777777888999999999887 7888899999999999999999887764 55555 899999
Q ss_pred cCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCc
Q 037514 466 SYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFN 545 (636)
Q Consensus 466 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n 545 (636)
++|+++ .+|+.++. .+.|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+..+ .|..||++.|
T Consensus 151 sNNkl~-~lp~~ig~-----~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScN 221 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGL-----LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCN 221 (722)
T ss_pred ecCccc-cCCccccc-----chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccC
Confidence 999987 45555542 266789999999998 77888999999999999999988 667777744 6889999999
Q ss_pred cccccccccccCCCCCCEEECcCCcceeecChhhh--cCCCCCCeeeCCCCC
Q 037514 546 VMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHF--RNLSGLDYLTISSSN 595 (636)
Q Consensus 546 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~L~ls~n~ 595 (636)
+++. +|-.|..+..|++|-|.+|++. +-|..+- +...-.++|++.-|+
T Consensus 222 kis~-iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 222 KISY-LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ceee-cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 9977 6788999999999999999997 5666421 233455788888774
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=9.6e-11 Score=122.10 Aligned_cols=127 Identities=24% Similarity=0.323 Sum_probs=56.8
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhh
Q 037514 78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVV 157 (636)
Q Consensus 78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 157 (636)
..++.+++..|.+.. +-..+..+++|..|++.+|.|..+... +..+++|++|++++|.|+.+. .+
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~----------l~~~~~L~~L~ls~N~I~~i~----~l 136 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENL----------LSSLVNLQVLDLSFNKITKLE----GL 136 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccc----------hhhhhcchheecccccccccc----ch
Confidence 344444444444442 222344445555555555555443321 334455555555555555442 23
Q ss_pred CCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCC-ccccCCCCCCEEeCcCCcCC
Q 037514 158 NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIP-QWLFNISTLVTLNLRSSQLS 222 (636)
Q Consensus 158 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p-~~l~~l~~L~~L~L~~n~l~ 222 (636)
..++.|+.|++++|.+.... .+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus 137 ~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 137 STLTLLKELNLSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hhccchhhheeccCcchhcc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 34444555555555544321 22334555555555555544222 1 344455555555555444
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.85 E-value=1.6e-09 Score=120.62 Aligned_cols=131 Identities=22% Similarity=0.227 Sum_probs=92.7
Q ss_pred CCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCcc--CCCCCChhhhhCCCCCCCEEEccCCcCCCCC
Q 037514 100 NLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMK--LSKVTNWLQVVNELPSLVELHLSNCQLNFPQ 177 (636)
Q Consensus 100 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 177 (636)
.....+...+-+|.+..+.. -..+++|++|-+.+|. +...+. +.|..++.|++|||++|.-.+..
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~-----------~~~~~~L~tLll~~n~~~l~~is~--~ff~~m~~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAG-----------SSENPKLRTLLLQRNSDWLLEISG--EFFRSLPLLRVLDLSGNSSLSKL 587 (889)
T ss_pred chhheeEEEEeccchhhccC-----------CCCCCccceEEEeecchhhhhcCH--HHHhhCcceEEEECCCCCccCcC
Confidence 33556777777776655433 3345578888888775 444432 45778888888888888766778
Q ss_pred CcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEccccc
Q 037514 178 SLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAING 245 (636)
Q Consensus 178 ~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 245 (636)
|..++++-+||+|+++++.+.. +|.++.+++.|.+|++..+.-...+|. ....+++||+|.+....
T Consensus 588 P~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA 653 (889)
T ss_pred ChHHhhhhhhhcccccCCCccc-cchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence 8888888888888888888875 788888888888888887765433332 24557888888876554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=2.7e-09 Score=77.83 Aligned_cols=56 Identities=36% Similarity=0.421 Sum_probs=20.8
Q ss_pred CEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCC
Q 037514 514 EYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGN 569 (636)
Q Consensus 514 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 569 (636)
++|++++|++....++.|.++++|++|++++|+++.+.+..|.++++|++|++++|
T Consensus 4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp SEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 33333333333222233333333333333333333333333333333333333333
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.80 E-value=6.8e-09 Score=115.68 Aligned_cols=128 Identities=24% Similarity=0.276 Sum_probs=85.9
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCC--CCcccccccccccccccCCCCCCCCEEecCCcc-CCCCCChh
Q 037514 78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQN--LKEYQITKELWVSDLIWLPDLSSSRYLHLEGMK-LSKVTNWL 154 (636)
Q Consensus 78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 154 (636)
..+++..+.+|.+. .++.+. ..++|++|-+..|. +..++.+ +|..++.|++|||++|. +..+ |
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~---------ff~~m~~LrVLDLs~~~~l~~L---P 588 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGE---------FFRSLPLLRVLDLSGNSSLSKL---P 588 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHH---------HHhhCcceEEEECCCCCccCcC---C
Confidence 56677777777765 333322 33467777777764 3333322 26678888888888753 3443 4
Q ss_pred hhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCc
Q 037514 155 QVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQ 220 (636)
Q Consensus 155 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~ 220 (636)
..++.+.+||+|+++++.+. .+|..+.+++.|.+|++..+.....+|.....+.+|++|.+....
T Consensus 589 ~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 57788888888888888876 467778888888888888776555556666678888888876554
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=3.7e-09 Score=77.13 Aligned_cols=61 Identities=46% Similarity=0.561 Sum_probs=53.1
Q ss_pred CcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccc
Q 037514 487 STLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVM 547 (636)
Q Consensus 487 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l 547 (636)
|+|++|++++|+++...+..|.++++|++|++++|.+....|..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678999999998866667889999999999999999888888899999999999999875
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.74 E-value=1.4e-09 Score=113.40 Aligned_cols=221 Identities=28% Similarity=0.251 Sum_probs=118.0
Q ss_pred hcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCC
Q 037514 356 LKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSR 435 (636)
Q Consensus 356 l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 435 (636)
+..+.++..+++.+|++...... +..+ ++|++|++++|.|+... .+..++.|+.|++++|.+... ..+..++.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~-l~~~--~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~ 163 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENL-LSSL--VNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKS 163 (414)
T ss_pred cccccceeeeeccccchhhcccc-hhhh--hcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchh
Confidence 34455566666666666544331 2222 66777777777765442 344556677777777776522 33445677
Q ss_pred CCEEECCCCCCCCCcc-hhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCC--C
Q 037514 436 LTALDIGGNRFLQLPS-TSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLL--C 512 (636)
Q Consensus 436 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~--~ 512 (636)
|+.+++++|++..+.. . ...+.+++.+.+.+|.+...-.. ... ..+..+++..|.++..-+ +..+. +
T Consensus 164 L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~--~~~-----~~l~~~~l~~n~i~~~~~--l~~~~~~~ 233 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL--DLL-----KKLVLLSLLDNKISKLEG--LNELVMLH 233 (414)
T ss_pred hhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch--HHH-----HHHHHhhcccccceeccC--cccchhHH
Confidence 7777777777766554 2 35666777777777766422111 111 222344566666552211 22222 2
Q ss_pred CCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceee---cChhhhcCCCCCCee
Q 037514 513 LEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGV---ITEKHFRNLSGLDYL 589 (636)
Q Consensus 513 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~~l~~L~~L 589 (636)
|+.+++++|++. ..+..+..+..++.+++.+|++... ..+...+.+..+....|++... ...........++..
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 666777777665 3334555666667777776666544 3344445555555555554311 111113344555556
Q ss_pred eCCCCCC
Q 037514 590 TISSSNS 596 (636)
Q Consensus 590 ~ls~n~~ 596 (636)
.+.+|..
T Consensus 311 ~~~~~~~ 317 (414)
T KOG0531|consen 311 TLELNPI 317 (414)
T ss_pred ccccCcc
Confidence 6665543
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.66 E-value=2.6e-10 Score=117.39 Aligned_cols=159 Identities=25% Similarity=0.302 Sum_probs=118.5
Q ss_pred CccccCCCCCCEEeCCCCCCCCCCCccccCC---------------------------------CCCCEEeCcCCCCCcc
Q 037514 71 PEFVYSLKKLKLLDLSESSFSGMLPPNIGNL---------------------------------SNLQYLDLSYQNLKEY 117 (636)
Q Consensus 71 p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l---------------------------------~~L~~L~Ls~n~l~~~ 117 (636)
|-.+..|+.|++|.|.++.+... ..+..+ ..|.+.+.++|.++..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m 179 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM 179 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH
Confidence 66778999999999999988531 111111 2244455566655554
Q ss_pred cccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcC
Q 037514 118 QITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNF 197 (636)
Q Consensus 118 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 197 (636)
+.. +.-++.|+.|+|++|+++.. +.+..+++|++|||++|.+..+.......++ |+.|.+++|.+
T Consensus 180 D~S----------Lqll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l 244 (1096)
T KOG1859|consen 180 DES----------LQLLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNAL 244 (1096)
T ss_pred HHH----------HHHHHHhhhhccchhhhhhh----HHHHhcccccccccccchhccccccchhhhh-heeeeecccHH
Confidence 432 66778899999999999987 4788899999999999998876555555565 99999999988
Q ss_pred CcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCcc
Q 037514 198 NSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSG 248 (636)
Q Consensus 198 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~ 248 (636)
+. ..++.++.+|+.||+++|-+.+.-.-.|+..+..|+.|+|.+|.+-.
T Consensus 245 ~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 245 TT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred Hh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 76 34578999999999999988754332347778889999999998654
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=6.6e-09 Score=96.32 Aligned_cols=157 Identities=21% Similarity=0.212 Sum_probs=77.2
Q ss_pred CCccEEECccCcCCcc-CCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCC-CCCCc-chhhcCCCCCCe
Q 037514 386 QKLSVIDLSNNKFFGG-ILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNR-FLQLP-STSMGNLCNLHS 462 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~ 462 (636)
..++++|+++..++.. ....+..+.+|+.|.+.|+++...+...+....+|+.|+++.+. ++... .-.+..|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4566677766665422 12234456666666677766665555556666666667666653 22211 122456666666
Q ss_pred EeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCC---CCCchhhcCCCCCCEEeCcCCcc-CCccChhhhCCCCCC
Q 037514 463 LDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG---GNLPDSLGNLLCLEYLGLSENSF-LGSLPTSIGNLSHLR 538 (636)
Q Consensus 463 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~Ls~n~~-~~~~p~~l~~l~~L~ 538 (636)
|+++-|.++.......-. .--++|+.|+++|+.-. ..+..-...+++|..||||+|.. ....-..|..++.|+
T Consensus 265 LNlsWc~l~~~~Vtv~V~---hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVA---HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred cCchHhhccchhhhHHHh---hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 666666654332211111 01145566666655322 11112234555666666665532 111112334444555
Q ss_pred eEeCcCc
Q 037514 539 ALYLSFN 545 (636)
Q Consensus 539 ~L~Ls~n 545 (636)
+|.++.|
T Consensus 342 ~lSlsRC 348 (419)
T KOG2120|consen 342 HLSLSRC 348 (419)
T ss_pred eeehhhh
Confidence 5555444
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=5.5e-09 Score=96.81 Aligned_cols=84 Identities=21% Similarity=0.122 Sum_probs=57.7
Q ss_pred CCCEEEccCCcCCC-CCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCC----CCCCCCC
Q 037514 162 SLVELHLSNCQLNF-PQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFP----PGKMCNL 236 (636)
Q Consensus 162 ~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~----~~~l~~L 236 (636)
+||+|||++..++. .....++.+.+|+.|.+.++++.+.+...+++-.+|+.|+++.+.-. .+.. +..++.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~---t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF---TENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc---chhHHHHHHHhhhhH
Confidence 57777877776653 22234566778888888888887777777777788888888776421 1122 6677888
Q ss_pred CEEEcccccCcc
Q 037514 237 RRLDLAINGFSG 248 (636)
Q Consensus 237 ~~L~L~~n~~~~ 248 (636)
..|+++++.+..
T Consensus 263 ~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 263 DELNLSWCFLFT 274 (419)
T ss_pred hhcCchHhhccc
Confidence 888888877654
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=1.5e-07 Score=87.49 Aligned_cols=84 Identities=12% Similarity=0.078 Sum_probs=56.8
Q ss_pred CCCCCCEEeCcCCccCCc-cChhhhCCCCCCeEeCcCccccccc-cccccCCCCCCEEECcCCcceeecChh-----hhc
Q 037514 509 NLLCLEYLGLSENSFLGS-LPTSIGNLSHLRALYLSFNVMSRII-SENIGQLSEPYMLDLYGNSWEGVITEK-----HFR 581 (636)
Q Consensus 509 ~l~~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~ 581 (636)
-++++..+-+..|++... ....+..++.+..|+|+.|+|..-. -..+..+++|..|.++++++...+.-+ ..+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 356778888888877532 3345666778888889888886532 245778888999999998876543221 245
Q ss_pred CCCCCCeeeCC
Q 037514 582 NLSGLDYLTIS 592 (636)
Q Consensus 582 ~l~~L~~L~ls 592 (636)
++++++.|+=+
T Consensus 277 RL~~v~vLNGs 287 (418)
T KOG2982|consen 277 RLTKVQVLNGS 287 (418)
T ss_pred eccceEEecCc
Confidence 66777777544
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=1.8e-07 Score=86.90 Aligned_cols=89 Identities=20% Similarity=0.255 Sum_probs=60.5
Q ss_pred CCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcC-CCccccCCCCC
Q 037514 133 DLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQ-IPQWLFNISTL 211 (636)
Q Consensus 133 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~p~~l~~l~~L 211 (636)
.++.++++||.+|.|+.-..+...+.++|+|++|+|+.|++...+...-..+.+|++|-|.+..+.-. ....+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45667788888888876544555677888888888888887654432224567888888887766432 23345567777
Q ss_pred CEEeCcCCcC
Q 037514 212 VTLNLRSSQL 221 (636)
Q Consensus 212 ~~L~L~~n~l 221 (636)
++|+++.|.+
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 7887777743
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.26 E-value=5.8e-08 Score=100.57 Aligned_cols=194 Identities=27% Similarity=0.288 Sum_probs=88.0
Q ss_pred CCccEEECccCcCCccC-CcccCCCCCCcEEEccCCcCCcccCCCCCCC-CCCCEEECCCCCCCC---Ccchh---hcC-
Q 037514 386 QKLSVIDLSNNKFFGGI-LSSLCSLPSLYWLRLGGNNLSGELSTSLPDC-SRLTALDIGGNRFLQ---LPSTS---MGN- 456 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~---~~~~~---~~~- 456 (636)
++++.|.+-.-.-.+.. |-.+..+.+|+.|-+.++.+... ..+..+ ..|+.|-.. |.+.. +...- +.+
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccc
Confidence 44555555443322222 55666788899999998877521 111100 112222111 11100 00000 000
Q ss_pred --CCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccCh-hhhC
Q 037514 457 --LCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPT-SIGN 533 (636)
Q Consensus 457 --l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~-~l~~ 533 (636)
--+|.+.+.++|.+. .+...+.-+ +.|+.|+|++|+++.. +.+..|++|++|||+.|.+. .+|. ...+
T Consensus 161 ~~Wn~L~~a~fsyN~L~-~mD~SLqll-----~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g 231 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLV-LMDESLQLL-----PALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVG 231 (1096)
T ss_pred hhhhhHhhhhcchhhHH-hHHHHHHHH-----HHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhh
Confidence 013444555555543 222222221 3446666666665522 24555666666666666554 2332 1222
Q ss_pred CCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514 534 LSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSS 594 (636)
Q Consensus 534 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n 594 (636)
+. |+.|.+++|.++.. ..+.++.+|+.||++.|-+.+.-.-..+..+..|+.|++.||
T Consensus 232 c~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 232 CK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 22 66666666655543 344555666666666664443222222344555566666666
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.23 E-value=5.9e-07 Score=82.53 Aligned_cols=237 Identities=19% Similarity=0.176 Sum_probs=112.9
Q ss_pred CCCcceeccccccCCCcchhhHHhhcC--CCccEEECccCcC---Ccc-------CCcccCCCCCCcEEEccCCcCCccc
Q 037514 359 QASVFKLTLSNAAISDTIPDWFWGVIS--QKLSVIDLSNNKF---FGG-------ILSSLCSLPSLYWLRLGGNNLSGEL 426 (636)
Q Consensus 359 ~~~L~~L~L~~n~~~~~~~~~~~~~~~--~~L~~L~ls~n~l---~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~ 426 (636)
+..++.+++++|.|......+++.... .+|+..+++.--. .+. ....+.+||.|+.++|++|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455555555555555444444333221 3444444443211 111 1123445666666666666665433
Q ss_pred CC----CCCCCCCCCEEECCCCCCCCCcchhh-------------cCCCCCCeEeCcCCcCCCchhhhHHh-hhcCCCCc
Q 037514 427 ST----SLPDCSRLTALDIGGNRFLQLPSTSM-------------GNLCNLHSLDISYNHITGEIKELTNA-FSACNVST 488 (636)
Q Consensus 427 ~~----~~~~l~~L~~L~L~~n~l~~~~~~~~-------------~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~~~~~ 488 (636)
|. .+++-+.|++|.+++|.+.-+..+.+ ..-|.|++.....|++.......... +.+. ..
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh--~~ 186 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH--EN 186 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh--cC
Confidence 32 23445566666666665543222111 13356666666666665322222111 1111 45
Q ss_pred ccEEEcccCcCCCCC-----chhhcCCCCCCEEeCcCCccCCccCh----hhhCCCCCCeEeCcCcccccccccc----c
Q 037514 489 LETLDLASNKLGGNL-----PDSLGNLLCLEYLGLSENSFLGSLPT----SIGNLSHLRALYLSFNVMSRIISEN----I 555 (636)
Q Consensus 489 L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~~~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~~~~----~ 555 (636)
|+++.+..|.|...- -..+..+.+|+.|||.+|-++-.-.. .+..-+.|+.|.+..|.++..-... |
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 566666666665221 11234566677777777765432221 2233344666666666655432211 1
Q ss_pred --cCCCCCCEEECcCCcceee------cChhhhcCCCCCCeeeCCCCCCC
Q 037514 556 --GQLSEPYMLDLYGNSWEGV------ITEKHFRNLSGLDYLTISSSNSS 597 (636)
Q Consensus 556 --~~l~~L~~L~L~~n~l~~~------~~~~~~~~l~~L~~L~ls~n~~~ 597 (636)
...+.|..|...+|...+. .++-.-..++-|..|.+.||.+.
T Consensus 267 ~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 267 NEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 1345666666666643322 12212234566666667777554
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.06 E-value=8.3e-07 Score=73.01 Aligned_cols=112 Identities=25% Similarity=0.336 Sum_probs=64.2
Q ss_pred CCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhc-CCCCCCEEeCcCCccCCccChhhhCCCCCC
Q 037514 460 LHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLG-NLLCLEYLGLSENSFLGSLPTSIGNLSHLR 538 (636)
Q Consensus 460 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~ 538 (636)
+..++++.|++. .+++....+... ..|+..+|++|.+. .+|..|. ..+.++.|++++|.++ .+|+.+..++.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~--~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKG--YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCC--ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence 445566666553 344444444433 44555666666666 3444443 3346666666666666 5566666666667
Q ss_pred eEeCcCccccccccccccCCCCCCEEECcCCcceeecChh
Q 037514 539 ALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEK 578 (636)
Q Consensus 539 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 578 (636)
.|+++.|.+... |+.+..+.++-.|+..+|.+. .+|.+
T Consensus 104 ~lNl~~N~l~~~-p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 104 SLNLRFNPLNAE-PRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred hcccccCccccc-hHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 677766666553 344444666666666666655 45554
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=4.2e-06 Score=55.68 Aligned_cols=40 Identities=40% Similarity=0.649 Sum_probs=25.4
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCccc
Q 037514 78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQ 118 (636)
Q Consensus 78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 118 (636)
++|++|++++|+|+ .+|..+++|++|++|++++|+|++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 35677777777776 34555777777777777777766543
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=4.3e-07 Score=74.63 Aligned_cols=84 Identities=25% Similarity=0.371 Sum_probs=42.5
Q ss_pred CCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCC
Q 037514 434 SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCL 513 (636)
Q Consensus 434 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L 513 (636)
..|+..++++|.+...++..-..++..+.+++++|.+. .+|..+..+ +.|+.|+++.|.+. ..|..+..+.++
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam-----~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAM-----PALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhh-----HHhhhcccccCccc-cchHHHHHHHhH
Confidence 34444555555555555544444445555555555554 333333332 33455555555555 444444445555
Q ss_pred CEEeCcCCccC
Q 037514 514 EYLGLSENSFL 524 (636)
Q Consensus 514 ~~L~Ls~n~~~ 524 (636)
..|+..+|.+.
T Consensus 126 ~~Lds~~na~~ 136 (177)
T KOG4579|consen 126 DMLDSPENARA 136 (177)
T ss_pred HHhcCCCCccc
Confidence 55555555544
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=1.1e-06 Score=80.82 Aligned_cols=110 Identities=17% Similarity=0.117 Sum_probs=46.3
Q ss_pred CCcceeccccccCCCcchhh----HHhhcCCCccEEECccCcCCccCC-----cccCCCCCCcEEEccCCcCCcc----c
Q 037514 360 ASVFKLTLSNAAISDTIPDW----FWGVISQKLSVIDLSNNKFFGGIL-----SSLCSLPSLYWLRLGGNNLSGE----L 426 (636)
Q Consensus 360 ~~L~~L~L~~n~~~~~~~~~----~~~~~~~~L~~L~ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~----~ 426 (636)
+.|+......|++....... +... ..|+++.+..|.|...-. ..+..+.+|+.||+.+|.++.. +
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh--~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESH--ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhh--cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 45666666666554322111 1111 355555555555532210 1112244555555555554411 1
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCcchhh------cCCCCCCeEeCcCCcCC
Q 037514 427 STSLPDCSRLTALDIGGNRFLQLPSTSM------GNLCNLHSLDISYNHIT 471 (636)
Q Consensus 427 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~ 471 (636)
...+...+.|++|.+.+|-++......+ ...++|..|...+|.+.
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 1223333445555555554443222111 12345555555555443
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.99 E-value=1.2e-05 Score=71.08 Aligned_cols=87 Identities=21% Similarity=0.146 Sum_probs=40.5
Q ss_pred hCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcC-CCccccCCCCCCEEeCcCCcCCCCCCC---CCCCC
Q 037514 157 VNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQ-IPQWLFNISTLVTLNLRSSQLSGSIPK---FPPGK 232 (636)
Q Consensus 157 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~---~~~~~ 232 (636)
|..+++|.+|.+++|+|+.+.|.--.-+++|..|.|.+|.+... --.-+..+++|++|.+-+|+.+. -.. ..+.+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~-k~~YR~yvl~k 138 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH-KKNYRLYVLYK 138 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc-ccCceeEEEEe
Confidence 33344444444444444443333333334444444444444320 01124455666666666665552 111 11566
Q ss_pred CCCCCEEEcccc
Q 037514 233 MCNLRRLDLAIN 244 (636)
Q Consensus 233 l~~L~~L~L~~n 244 (636)
+++|+.||.+.-
T Consensus 139 lp~l~~LDF~kV 150 (233)
T KOG1644|consen 139 LPSLRTLDFQKV 150 (233)
T ss_pred cCcceEeehhhh
Confidence 677777776543
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.93 E-value=2e-05 Score=69.63 Aligned_cols=104 Identities=21% Similarity=0.324 Sum_probs=58.6
Q ss_pred CCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCC-cCc
Q 037514 103 NLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQS-LPF 181 (636)
Q Consensus 103 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~ 181 (636)
+...+||++|.+..++. |..++.|.+|.+++|+|+.+.. ..-..+++|++|.|.+|.+..... ..+
T Consensus 43 ~~d~iDLtdNdl~~l~~-----------lp~l~rL~tLll~nNrIt~I~p--~L~~~~p~l~~L~LtnNsi~~l~dl~pL 109 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-----------LPHLPRLHTLLLNNNRITRIDP--DLDTFLPNLKTLILTNNSIQELGDLDPL 109 (233)
T ss_pred ccceecccccchhhccc-----------CCCccccceEEecCCcceeecc--chhhhccccceEEecCcchhhhhhcchh
Confidence 45556666666655443 5666666666666666666632 122335566666666666543211 234
Q ss_pred cCCCCCCEEEccCCcCCcCC---CccccCCCCCCEEeCcCC
Q 037514 182 LNFTSLSILELSYDNFNSQI---PQWLFNISTLVTLNLRSS 219 (636)
Q Consensus 182 ~~l~~L~~L~L~~n~~~~~~---p~~l~~l~~L~~L~L~~n 219 (636)
..+++|++|.+-+|.++..- --.+..+++|++||..+-
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 55667777777666665411 113456777777777644
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.2e-05 Score=53.50 Aligned_cols=35 Identities=46% Similarity=0.593 Sum_probs=13.2
Q ss_pred CCEEeCcCCccCCccChhhhCCCCCCeEeCcCcccc
Q 037514 513 LEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMS 548 (636)
Q Consensus 513 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~ 548 (636)
|++|++++|+|. .+|..++++++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 344444444443 23333344444444444444433
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.90 E-value=1.2e-06 Score=85.61 Aligned_cols=285 Identities=19% Similarity=0.106 Sum_probs=136.2
Q ss_pred CCCEEeCcCCcCCCCCCCC-CCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCC
Q 037514 210 TLVTLNLRSSQLSGSIPKF-PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELV 288 (636)
Q Consensus 210 ~L~~L~L~~n~l~~~~p~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~ 288 (636)
.|+.|.+++++-.+.-+-- ...+++++++|.+.++.. .....+..+. ..+.+|+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~--iTd~s~~sla-----------------------~~C~~l~ 193 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKK--ITDSSLLSLA-----------------------RYCRKLR 193 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhccee--ccHHHHHHHH-----------------------Hhcchhh
Confidence 4666777766533221100 045667777776666541 1111111111 2456777
Q ss_pred EEEccCC-cCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcC--CChhhcCCCCccee
Q 037514 289 ALNLYRN-SWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSA--FPSWLKTQASVFKL 365 (636)
Q Consensus 289 ~L~l~~n-~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L 365 (636)
++++..| .++...-...-..+++|+++++++|+......+.....+...++.+...+|.-.+. +...-..+..+.++
T Consensus 194 ~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~l 273 (483)
T KOG4341|consen 194 HLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKL 273 (483)
T ss_pred hhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhcc
Confidence 7777774 33332222233467888888888874221112222223344455555555542211 11112334445566
Q ss_pred cccccc-CCCcchhhHHhhcCCCccEEECccCcCCc-cC-CcccCCCCCCcEEEccCCcC-CcccCC-CCCCCCCCCEEE
Q 037514 366 TLSNAA-ISDTIPDWFWGVISQKLSVIDLSNNKFFG-GI-LSSLCSLPSLYWLRLGGNNL-SGELST-SLPDCSRLTALD 440 (636)
Q Consensus 366 ~L~~n~-~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~~~l~~L~~L~ 440 (636)
++.+|. +++..-..+.... ..|+.++.+++.-.+ .. ..--.+..+|+.+-+++++- +..-.. .-.+++.|+.++
T Consensus 274 nl~~c~~lTD~~~~~i~~~c-~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 274 NLQHCNQLTDEDLWLIACGC-HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred chhhhccccchHHHHHhhhh-hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence 655553 3322211111111 567777777764322 11 11223456777777777752 211111 123566777777
Q ss_pred CCCCCCCCC--cchhhcCCCCCCeEeCcCCcCCCchhhhHHhhh--cCCCCcccEEEcccCcCC-CCCchhhcCCCCCCE
Q 037514 441 IGGNRFLQL--PSTSMGNLCNLHSLDISYNHITGEIKELTNAFS--ACNVSTLETLDLASNKLG-GNLPDSLGNLLCLEY 515 (636)
Q Consensus 441 L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~~~~~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~ 515 (636)
+..+..... ....-.+++.|+.+.+++|..-.. +.+..+. .+....|..+.+++++.. ...-+.+..+++|+.
T Consensus 353 ~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD--~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 353 LEECGLITDGTLASLSRNCPRLRVLSLSHCELITD--EGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred ccccceehhhhHhhhccCCchhccCChhhhhhhhh--hhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 777654321 122224567777777776653211 1111111 133455666666666544 223344566666666
Q ss_pred EeCcCCc
Q 037514 516 LGLSENS 522 (636)
Q Consensus 516 L~Ls~n~ 522 (636)
+++-+++
T Consensus 431 i~l~~~q 437 (483)
T KOG4341|consen 431 IELIDCQ 437 (483)
T ss_pred eeeechh
Confidence 6666664
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=5.3e-06 Score=90.52 Aligned_cols=214 Identities=19% Similarity=0.211 Sum_probs=132.7
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccc-------cCCCCCCCCEEecCCccCCCC
Q 037514 78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLI-------WLPDLSSSRYLHLEGMKLSKV 150 (636)
Q Consensus 78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~-------~~~~l~~L~~L~L~~n~l~~~ 150 (636)
-+++..++.+.......-..+.... |+.|.+.+-....-..... +..++. .-..-.+|++|+++|...-.
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~-~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s- 136 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDD-ATIDIISLLKDLLNEESRQNLQHLDISGSELFS- 136 (699)
T ss_pred heeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhh-hhccHHHHHHHHHhHHHHHhhhhcCccccchhh-
Confidence 3677777777665433323333333 7777776433222111000 000000 01123579999999865442
Q ss_pred CChhhhhCC-CCCCCEEEccCCcCCCCC-CcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCC
Q 037514 151 TNWLQVVNE-LPSLVELHLSNCQLNFPQ-SLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKF 228 (636)
Q Consensus 151 ~~~~~~~~~-l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 228 (636)
..|+..++. +|+|+.|.+.+=.+.... .....++++|..||+|+++++.. .+++++++|++|.+++=.+.. ..++
T Consensus 137 ~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~-~~~l 213 (699)
T KOG3665|consen 137 NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFES-YQDL 213 (699)
T ss_pred ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCc-hhhH
Confidence 347666654 899999999987664322 23356889999999999999873 788999999999998776662 1211
Q ss_pred -CCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhc
Q 037514 229 -PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQ 307 (636)
Q Consensus 229 -~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~ 307 (636)
.+.++++|++||+|........ ..+. ..-+.-..+++|+.||.+++.+.+.+-+..+.
T Consensus 214 ~~LF~L~~L~vLDIS~~~~~~~~-~ii~--------------------qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 214 IDLFNLKKLRVLDISRDKNNDDT-KIIE--------------------QYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred HHHhcccCCCeeeccccccccch-HHHH--------------------HHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 2778999999999987654322 1000 01112234679999999998888766665566
Q ss_pred CCCCCCEEEcc
Q 037514 308 NLTKLNSLYLS 318 (636)
Q Consensus 308 ~l~~L~~L~L~ 318 (636)
.-++|+.+..-
T Consensus 273 sH~~L~~i~~~ 283 (699)
T KOG3665|consen 273 SHPNLQQIAAL 283 (699)
T ss_pred hCccHhhhhhh
Confidence 66777766544
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.73 E-value=3.4e-06 Score=82.43 Aligned_cols=235 Identities=19% Similarity=0.122 Sum_probs=105.9
Q ss_pred cCCCCcceeccccc-cCCCcchhhHHhhcCCCccEEECccCc-CCcc-CCcccCCCCCCcEEEccCCcCCcc--cCCCCC
Q 037514 357 KTQASVFKLTLSNA-AISDTIPDWFWGVISQKLSVIDLSNNK-FFGG-ILSSLCSLPSLYWLRLGGNNLSGE--LSTSLP 431 (636)
Q Consensus 357 ~~~~~L~~L~L~~n-~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~ 431 (636)
..+++++++++..| .++...-..+...+ ++|++++++-+. +++. +-..+.+++.++.+.+.||.-.+. +-..-.
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC-~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~ 265 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKYLAEGC-RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAA 265 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHHHHHhh-hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhc
Confidence 34555555555553 33333322222222 556666665552 2221 111223344455555554421110 001112
Q ss_pred CCCCCCEEECCCCCC-CCCcch-hhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCc-CCCCCchhh-
Q 037514 432 DCSRLTALDIGGNRF-LQLPST-SMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNK-LGGNLPDSL- 507 (636)
Q Consensus 432 ~l~~L~~L~L~~n~l-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l- 507 (636)
++..+..+++..|.. +..... .-..+..|+.|+.+++.-- ....+..+.. ...+|+.|-+++|+ ++..-...+
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~--~d~~l~aLg~-~~~~L~~l~l~~c~~fsd~~ft~l~ 342 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDI--TDEVLWALGQ-HCHNLQVLELSGCQQFSDRGFTMLG 342 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCC--chHHHHHHhc-CCCceEEEeccccchhhhhhhhhhh
Confidence 334445555545432 221110 1124556666666665421 1112222222 23666777666665 221111122
Q ss_pred cCCCCCCEEeCcCCccCC--ccChhhhCCCCCCeEeCcCccc-cccc----cccccCCCCCCEEECcCCcceeecChhhh
Q 037514 508 GNLLCLEYLGLSENSFLG--SLPTSIGNLSHLRALYLSFNVM-SRII----SENIGQLSEPYMLDLYGNSWEGVITEKHF 580 (636)
Q Consensus 508 ~~l~~L~~L~Ls~n~~~~--~~p~~l~~l~~L~~L~Ls~n~l-~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 580 (636)
.+++.|+.+++.++.... .+-..-.+++.|+++.+++|.. ++.- ...-.....|+.+.+++++....-..+..
T Consensus 343 rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 343 RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL 422 (483)
T ss_pred cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence 355667777777664321 1222224566777777776643 2210 11223456677777777765433333445
Q ss_pred cCCCCCCeeeCCCCC
Q 037514 581 RNLSGLDYLTISSSN 595 (636)
Q Consensus 581 ~~l~~L~~L~ls~n~ 595 (636)
..++.|+.+++-+++
T Consensus 423 ~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 423 SICRNLERIELIDCQ 437 (483)
T ss_pred hhCcccceeeeechh
Confidence 566777777776664
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=3e-05 Score=84.72 Aligned_cols=139 Identities=19% Similarity=0.282 Sum_probs=85.6
Q ss_pred CCcceeccccccC-CCcchhhHHhhcCCCccEEECccCcCCc-cCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCC
Q 037514 360 ASVFKLTLSNAAI-SDTIPDWFWGVISQKLSVIDLSNNKFFG-GILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLT 437 (636)
Q Consensus 360 ~~L~~L~L~~n~~-~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 437 (636)
.+|++|++++... ....|..++.++ |+|+.|.+++-.+.. .......++|+|..||+++.+++.. .+++.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~L-PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTML-PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhC-cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 4677777776533 233444455444 788888888766532 2334455678888888888887633 5677888888
Q ss_pred EEECCCCCCCC-CcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhh--cCCCCcccEEEcccCcCCCC
Q 037514 438 ALDIGGNRFLQ-LPSTSMGNLCNLHSLDISYNHITGEIKELTNAFS--ACNVSTLETLDLASNKLGGN 502 (636)
Q Consensus 438 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~ 502 (636)
+|.+.+-.+.. ..-..+..+++|+.||+|........ ....... ...+|.|+.||.|++.+.+.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-HHHHHHHHhcccCccccEEecCCcchhHH
Confidence 88888777764 22234667888888888876654332 2221111 11246666666666665543
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00021 Score=71.89 Aligned_cols=136 Identities=15% Similarity=0.140 Sum_probs=81.7
Q ss_pred cCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCC
Q 037514 406 LCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACN 485 (636)
Q Consensus 406 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 485 (636)
+..+.+++.|++++|.++ .+|. + .++|++|.+++|.-....|+.+ .++|+.|++++|.....+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP---------- 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP---------- 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc----------
Confidence 334688999999999876 4452 2 2479999998865444444433 3579999999884222222
Q ss_pred CCcccEEEcccCcCC--CCCchhhcCCCCCCEEeCcCCccC--CccChhhhCCCCCCeEeCcCccccccccccccCCCCC
Q 037514 486 VSTLETLDLASNKLG--GNLPDSLGNLLCLEYLGLSENSFL--GSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEP 561 (636)
Q Consensus 486 ~~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~Ls~n~~~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 561 (636)
++|+.|+++++... +.+|. +|+.|.+.+++.. ..+|..+ .++|++|++++|.... .|..+. .+|
T Consensus 112 -~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~-LP~~LP--~SL 179 (426)
T PRK15386 112 -ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNII-LPEKLP--ESL 179 (426)
T ss_pred -cccceEEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCccc-Cccccc--ccC
Confidence 45688888766543 12332 4667776543311 1112111 1578888888877553 233333 577
Q ss_pred CEEECcCC
Q 037514 562 YMLDLYGN 569 (636)
Q Consensus 562 ~~L~L~~n 569 (636)
+.|+++.|
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 88887766
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=0.0002 Score=72.07 Aligned_cols=134 Identities=19% Similarity=0.206 Sum_probs=87.2
Q ss_pred CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCC-CCCCCcchhhcCCCCCCeEe
Q 037514 386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGN-RFLQLPSTSMGNLCNLHSLD 464 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 464 (636)
..++.|++++|.++.. |. -.++|+.|.+++|.-...+|..+. ++|++|++++| .+...+ ++|+.|+
T Consensus 52 ~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP-------~sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP-------ESVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc-------cccceEE
Confidence 7899999999987543 41 234799999998665456676553 68999999998 554332 3588888
Q ss_pred CcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCC--CCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeC
Q 037514 465 ISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG--GNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYL 542 (636)
Q Consensus 465 l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L 542 (636)
++.+.... ++.. .++|+.|.+.+++.. ...|..+. ++|+.|++++|... ..|..+. .+|+.|++
T Consensus 119 L~~n~~~~-L~~L--------PssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 119 IKGSATDS-IKNV--------PNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred eCCCCCcc-cccC--------cchHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 87765431 1111 245677877543311 11121111 57999999998865 3454444 58999998
Q ss_pred cCcc
Q 037514 543 SFNV 546 (636)
Q Consensus 543 s~n~ 546 (636)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 8763
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.52 E-value=0.00023 Score=60.89 Aligned_cols=44 Identities=11% Similarity=0.244 Sum_probs=18.7
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCccc
Q 037514 73 FVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQ 118 (636)
Q Consensus 73 ~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 118 (636)
.|..+++|+.+.+.. .+..+....|.++++|+.+.+..+ +..+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~ 50 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIG 50 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccc
Confidence 455555666666653 344444455666666666666543 44433
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.45 E-value=0.0003 Score=60.18 Aligned_cols=107 Identities=18% Similarity=0.233 Sum_probs=50.1
Q ss_pred ccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCC
Q 037514 96 PNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNF 175 (636)
Q Consensus 96 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 175 (636)
..|.++++|+.+.+.. .++.+.... |.++++|+.+.+.++ +..++. ..|..+++++.+.+.+ .+..
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~---------F~~~~~l~~i~~~~~-~~~i~~--~~F~~~~~l~~i~~~~-~~~~ 71 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENA---------FSNCTSLKSINFPNN-LTSIGD--NAFSNCKSLESITFPN-NLKS 71 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTT---------TTT-TT-SEEEESST-TSCE-T--TTTTT-TT-EEEEETS-TT-E
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhh---------ccccccccccccccc-ccccce--eeeecccccccccccc-cccc
Confidence 4566777777777763 455544432 666666777776664 555533 4566666667666654 3333
Q ss_pred CCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcC
Q 037514 176 PQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRS 218 (636)
Q Consensus 176 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~ 218 (636)
.....|..+++|+.+++..+ +.......|.+. +|+.+.+..
T Consensus 72 i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 34455666666666666543 433334445554 666666554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=8.1e-06 Score=75.49 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=59.1
Q ss_pred CCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhh
Q 037514 77 LKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQV 156 (636)
Q Consensus 77 l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 156 (636)
+.++++|+.=||.+.++ .-..+++.|++|.||-|+|+++.+ +..|++|++|+|..|.|.++.. ..-
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p-----------l~rCtrLkElYLRkN~I~sldE-L~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP-----------LQRCTRLKELYLRKNCIESLDE-LEY 83 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh-----------HHHHHHHHHHHHHhcccccHHH-HHH
Confidence 34667777777777644 224567778888888887777655 7777888888888887777643 235
Q ss_pred hCCCCCCCEEEccCCcCCCC
Q 037514 157 VNELPSLVELHLSNCQLNFP 176 (636)
Q Consensus 157 ~~~l~~L~~L~L~~n~l~~~ 176 (636)
+.++|+|++|.|..|.-.+.
T Consensus 84 LknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HhcCchhhhHhhccCCcccc
Confidence 66777777777777765443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.10 E-value=0.00031 Score=65.07 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=5.7
Q ss_pred CCCCEEEccCCcC
Q 037514 161 PSLVELHLSNCQL 173 (636)
Q Consensus 161 ~~L~~L~L~~n~l 173 (636)
|+|+++++++|++
T Consensus 91 P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 91 PNLKVLNLSGNKI 103 (260)
T ss_pred CceeEEeecCCcc
Confidence 4444444444443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00025 Score=65.72 Aligned_cols=85 Identities=28% Similarity=0.329 Sum_probs=46.7
Q ss_pred hcCCCCCCEEeCcCC--ccCCccChhhhCCCCCCeEeCcCcccccc-ccccccCCCCCCEEECcCCcceeecCh---hhh
Q 037514 507 LGNLLCLEYLGLSEN--SFLGSLPTSIGNLSHLRALYLSFNVMSRI-ISENIGQLSEPYMLDLYGNSWEGVITE---KHF 580 (636)
Q Consensus 507 l~~l~~L~~L~Ls~n--~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~ 580 (636)
+..+++|++|.++.| ++++.++-....+++|+++++++|++..+ .-..+..+.+|..|++.+|.-+. .-+ .+|
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHH
Confidence 444556666666666 45544444445556666666666665531 11223445556666666665443 222 356
Q ss_pred cCCCCCCeeeCC
Q 037514 581 RNLSGLDYLTIS 592 (636)
Q Consensus 581 ~~l~~L~~L~ls 592 (636)
..+++|++||--
T Consensus 140 ~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 140 LLLPSLKYLDGC 151 (260)
T ss_pred HHhhhhcccccc
Confidence 666777766543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=7e-05 Score=69.50 Aligned_cols=100 Identities=25% Similarity=0.245 Sum_probs=76.3
Q ss_pred CcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccc-cccccCCCCCCEEE
Q 037514 487 STLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRII-SENIGQLSEPYMLD 565 (636)
Q Consensus 487 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~ 565 (636)
.+.+.|+..||.++++ .....++.|+.|.||-|+|+..-| +..|++|++|+|..|.|..+. ...+.++++|+.|-
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4557888888888732 234678889999999998875443 678899999999999887652 24567889999999
Q ss_pred CcCCcceeecCh----hhhcCCCCCCeee
Q 037514 566 LYGNSWEGVITE----KHFRNLSGLDYLT 590 (636)
Q Consensus 566 L~~n~l~~~~~~----~~~~~l~~L~~L~ 590 (636)
|..|+..|.-+. .++..+++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 999988776665 3567778888776
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.62 E-value=0.00088 Score=71.96 Aligned_cols=62 Identities=21% Similarity=0.209 Sum_probs=30.3
Q ss_pred CCCCcEEEccCCc-CCcccCCCC-CCCCCCCEEECCCCC-CCCCc-chhhcCCCCCCeEeCcCCcC
Q 037514 409 LPSLYWLRLGGNN-LSGELSTSL-PDCSRLTALDIGGNR-FLQLP-STSMGNLCNLHSLDISYNHI 470 (636)
Q Consensus 409 l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l 470 (636)
+++|+.++++.+. ++...-..+ ..|++|++|.+.+|. ++... ......++.|++|++++|..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4556666666655 332211111 125666666665555 33322 11233456666666666654
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.39 E-value=0.0011 Score=71.23 Aligned_cols=160 Identities=23% Similarity=0.205 Sum_probs=88.7
Q ss_pred CCccEEECccCcCCcc--CCcccCCCCCCcEEEccCC-cCCcc----cCCCCCCCCCCCEEECCCCC-CCCCcchhhc-C
Q 037514 386 QKLSVIDLSNNKFFGG--ILSSLCSLPSLYWLRLGGN-NLSGE----LSTSLPDCSRLTALDIGGNR-FLQLPSTSMG-N 456 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~ 456 (636)
+.|+.+.+.++.-... .......++.|+.|+++++ ..... .......+++|+.|+++.+. ++...-..+. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 4555555555432221 1223344566666666652 11111 11234456899999999998 6654444443 4
Q ss_pred CCCCCeEeCcCCc-CCCchhhhHHhhhcCCCCcccEEEcccCcCCCC--CchhhcCCCCCCEEeCcCCc----cC-----
Q 037514 457 LCNLHSLDISYNH-ITGEIKELTNAFSACNVSTLETLDLASNKLGGN--LPDSLGNLLCLEYLGLSENS----FL----- 524 (636)
Q Consensus 457 l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~----~~----- 524 (636)
+++|++|.+.+|. +++.. +..... .++.|++|++++|..... +.....++++|+.|.+.... ++
T Consensus 268 c~~L~~L~l~~c~~lt~~g---l~~i~~-~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~ 343 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEG---LVSIAE-RCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLS 343 (482)
T ss_pred CCCcceEccCCCCccchhH---HHHHHH-hcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHH
Confidence 8899999988887 45332 222222 247789999998876411 22334556666665544432 11
Q ss_pred --------CccChhhhCCCCCCeEeCcCccccc
Q 037514 525 --------GSLPTSIGNLSHLRALYLSFNVMSR 549 (636)
Q Consensus 525 --------~~~p~~l~~l~~L~~L~Ls~n~l~~ 549 (636)
......+..+++++.+.+.++....
T Consensus 344 ~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~ 376 (482)
T KOG1947|consen 344 GLLTLTSDDLAELILRSCPKLTDLSLSYCGISD 376 (482)
T ss_pred HhhccCchhHhHHHHhcCCCcchhhhhhhhccC
Confidence 1111234567777777777776443
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.21 E-value=0.00035 Score=73.17 Aligned_cols=189 Identities=23% Similarity=0.188 Sum_probs=105.1
Q ss_pred CccEEEccCCCCCcCCC----hhhcCCCCcceeccccccCCCcchhhHHhhcC---CCccEEECccCcCCcc----CCcc
Q 037514 337 SLRQMAINDCQLGSAFP----SWLKTQASVFKLTLSNAAISDTIPDWFWGVIS---QKLSVIDLSNNKFFGG----ILSS 405 (636)
Q Consensus 337 ~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~---~~L~~L~ls~n~l~~~----~~~~ 405 (636)
.+..+.+.+|.+..... ..+....+|+.|++++|.+.+.....+..... ..+++|++..|.++.. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 47778888888765433 34566778888888888887543333332211 2455666666666543 2334
Q ss_pred cCCCCCCcEEEccCCcCCcc----cCCCCC----CCCCCCEEECCCCCCCCCc----chhhcCCCC-CCeEeCcCCcCCC
Q 037514 406 LCSLPSLYWLRLGGNNLSGE----LSTSLP----DCSRLTALDIGGNRFLQLP----STSMGNLCN-LHSLDISYNHITG 472 (636)
Q Consensus 406 ~~~l~~L~~L~L~~n~l~~~----~~~~~~----~l~~L~~L~L~~n~l~~~~----~~~~~~l~~-L~~L~l~~n~l~~ 472 (636)
+.....++.++++.|.+... ++..+. ...++++|++.+|.++... ...+...+. +..+++..|++.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 44566777777777766311 122222 3556777777777766322 222334444 5667777777654
Q ss_pred chhhhHHhhhcCCCCcccEEEcccCcCCCCC----chhhcCCCCCCEEeCcCCccCC
Q 037514 473 EIKELTNAFSACNVSTLETLDLASNKLGGNL----PDSLGNLLCLEYLGLSENSFLG 525 (636)
Q Consensus 473 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~n~~~~ 525 (636)
.........-...-..++.++++.|.++..- ...+..++.++.+.++.|.+..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 3222222111110145567777777776432 3345566677777777776653
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.81 E-value=0.00044 Score=72.46 Aligned_cols=187 Identities=26% Similarity=0.229 Sum_probs=111.9
Q ss_pred ccEEECccCcCCccC----CcccCCCCCCcEEEccCCcCCccc----CCCCCCC-CCCCEEECCCCCCCCCc----chhh
Q 037514 388 LSVIDLSNNKFFGGI----LSSLCSLPSLYWLRLGGNNLSGEL----STSLPDC-SRLTALDIGGNRFLQLP----STSM 454 (636)
Q Consensus 388 L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l-~~L~~L~L~~n~l~~~~----~~~~ 454 (636)
+..+.+.+|.+.... ...+...+.|+.|++++|.+.+.. ...+... ..+++|++..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 677888888875433 334556788888999998886321 2223333 56777888888877533 3345
Q ss_pred cCCCCCCeEeCcCCcCCCchhhhHH-hhhc--CCCCcccEEEcccCcCCCC----CchhhcCCCC-CCEEeCcCCccCCc
Q 037514 455 GNLCNLHSLDISYNHITGEIKELTN-AFSA--CNVSTLETLDLASNKLGGN----LPDSLGNLLC-LEYLGLSENSFLGS 526 (636)
Q Consensus 455 ~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~--~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~-L~~L~Ls~n~~~~~ 526 (636)
.....++.++++.|.+.......+. .+.. ....++++|++++|.++.. +...+...+. +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 5577888888888877421111111 1111 1235677888888877622 1233455555 66678887776532
Q ss_pred ----cChhhhCC-CCCCeEeCcCccccccc----cccccCCCCCCEEECcCCcceee
Q 037514 527 ----LPTSIGNL-SHLRALYLSFNVMSRII----SENIGQLSEPYMLDLYGNSWEGV 574 (636)
Q Consensus 527 ----~p~~l~~l-~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~ 574 (636)
....+..+ ..+++++++.|.++..- .+.+..++.++.+.++.|++...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 22234444 56677777777776542 33445566777777777766543
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.79 E-value=0.013 Score=32.28 Aligned_cols=11 Identities=55% Similarity=0.797 Sum_probs=4.4
Q ss_pred CEEeCcCCccC
Q 037514 514 EYLGLSENSFL 524 (636)
Q Consensus 514 ~~L~Ls~n~~~ 524 (636)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444333
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.12 E-value=0.024 Score=31.18 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=8.2
Q ss_pred CCEEECcCCcceeecChh
Q 037514 561 PYMLDLYGNSWEGVITEK 578 (636)
Q Consensus 561 L~~L~L~~n~l~~~~~~~ 578 (636)
|++|++++|+++ .+|.+
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 445555555544 34443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.06 E-value=0.064 Score=27.29 Aligned_cols=13 Identities=54% Similarity=0.667 Sum_probs=4.5
Q ss_pred CCCEEeCcCCCCC
Q 037514 103 NLQYLDLSYQNLK 115 (636)
Q Consensus 103 ~L~~L~Ls~n~l~ 115 (636)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.92 E-value=0.056 Score=48.47 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=55.4
Q ss_pred CCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccC-cCCCCCchhhcCCCC
Q 037514 434 SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASN-KLGGNLPDSLGNLLC 512 (636)
Q Consensus 434 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~l~~ 512 (636)
..++.+|-++..|....-..+..++.++.|.+.+|.-.+ ...+..+.. ..++|+.|++++| +|++.--..+..+++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d--D~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD--DWCLERLGG-LAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchh--hHHHHHhcc-cccchheeeccCCCeechhHHHHHHHhhh
Confidence 356778888887776666667778888888888776332 223333333 3477777777777 466444456667777
Q ss_pred CCEEeCcCCc
Q 037514 513 LEYLGLSENS 522 (636)
Q Consensus 513 L~~L~Ls~n~ 522 (636)
|+.|.|.+=.
T Consensus 178 Lr~L~l~~l~ 187 (221)
T KOG3864|consen 178 LRRLHLYDLP 187 (221)
T ss_pred hHHHHhcCch
Confidence 7777776543
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.78 E-value=0.16 Score=29.12 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=15.1
Q ss_pred CCCCCEEECcCCcceeecChhhhc
Q 037514 558 LSEPYMLDLYGNSWEGVITEKHFR 581 (636)
Q Consensus 558 l~~L~~L~L~~n~l~~~~~~~~~~ 581 (636)
+++|+.|+|++|++. .+|.++|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356677777777776 46766554
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.78 E-value=0.16 Score=29.12 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=15.1
Q ss_pred CCCCCEEECcCCcceeecChhhhc
Q 037514 558 LSEPYMLDLYGNSWEGVITEKHFR 581 (636)
Q Consensus 558 l~~L~~L~L~~n~l~~~~~~~~~~ 581 (636)
+++|+.|+|++|++. .+|.++|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356677777777776 46766554
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.43 E-value=0.0055 Score=55.72 Aligned_cols=87 Identities=20% Similarity=0.163 Sum_probs=58.5
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCC
Q 037514 73 FVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTN 152 (636)
Q Consensus 73 ~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 152 (636)
.+..+++++.||++.|++. .+...|+.++.|..||++.|.+.-.+-+ ++....++++++..|..+..|.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d----------~~q~~e~~~~~~~~n~~~~~p~ 105 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKFLPKD----------AKQQRETVNAASHKNNHSQQPK 105 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhhChhh----------HHHHHHHHHHHhhccchhhCCc
Confidence 4556788999999998876 3445677888888888888877655432 5556666666666666665542
Q ss_pred hhhhhCCCCCCCEEEccCCcC
Q 037514 153 WLQVVNELPSLVELHLSNCQL 173 (636)
Q Consensus 153 ~~~~~~~l~~L~~L~L~~n~l 173 (636)
.+++.++++++++-.+.+
T Consensus 106 ---s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 106 ---SQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred ---cccccCCcchhhhccCcc
Confidence 556666666666655553
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.75 E-value=0.075 Score=47.68 Aligned_cols=84 Identities=23% Similarity=0.238 Sum_probs=45.1
Q ss_pred CCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcch-hhHHhhcCCCccEEECccC-cCCccCCcccCCCCCC
Q 037514 335 PFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIP-DWFWGVISQKLSVIDLSNN-KFFGGILSSLCSLPSL 412 (636)
Q Consensus 335 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~-~~~~~~~~~~L~~L~ls~n-~l~~~~~~~~~~l~~L 412 (636)
-..++.++-+++.|...--+.+..++.++.|.+.+|.--+... .-+.+ ..++|+.|++++| +|++.-...+..+++|
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHHHHHHHhhhh
Confidence 3456777777777766555666777777777777664432211 11122 1156666666655 3443333344445555
Q ss_pred cEEEccC
Q 037514 413 YWLRLGG 419 (636)
Q Consensus 413 ~~L~L~~ 419 (636)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 5555443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.75 E-value=0.45 Score=27.22 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=11.4
Q ss_pred CCCCEEECCCCCCCCCcchhh
Q 037514 434 SRLTALDIGGNRFLQLPSTSM 454 (636)
Q Consensus 434 ~~L~~L~L~~n~l~~~~~~~~ 454 (636)
++|++|+|++|+++.+++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 355556666665555554443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.75 E-value=0.45 Score=27.22 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=11.4
Q ss_pred CCCCEEECCCCCCCCCcchhh
Q 037514 434 SRLTALDIGGNRFLQLPSTSM 454 (636)
Q Consensus 434 ~~L~~L~L~~n~l~~~~~~~~ 454 (636)
++|++|+|++|+++.+++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 355556666665555554443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.28 E-value=0.035 Score=50.68 Aligned_cols=55 Identities=18% Similarity=0.087 Sum_probs=22.8
Q ss_pred cEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcc
Q 037514 490 ETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNV 546 (636)
Q Consensus 490 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~ 546 (636)
..|+++.|++. ..|..++....+..+++..|..+ ..|.++...++++++++.+|.
T Consensus 68 ~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 68 VRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence 33444444443 33444444444444444444333 334444444444444444443
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.16 E-value=0.67 Score=25.88 Aligned_cols=15 Identities=53% Similarity=0.678 Sum_probs=6.6
Q ss_pred CCCCeEeCcCCcCCC
Q 037514 458 CNLHSLDISYNHITG 472 (636)
Q Consensus 458 ~~L~~L~l~~n~l~~ 472 (636)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 445555555555443
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.66 E-value=1.1 Score=25.63 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=9.8
Q ss_pred CCCCEEeCcCCCCCcc
Q 037514 102 SNLQYLDLSYQNLKEY 117 (636)
Q Consensus 102 ~~L~~L~Ls~n~l~~~ 117 (636)
++|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666553
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=80.17 E-value=0.8 Score=56.96 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=33.7
Q ss_pred ECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccccccccccCc
Q 037514 565 DLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPF 610 (636)
Q Consensus 565 ~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~ 610 (636)
||++|+|+ .+|.+.|..+++|+.|+|++| +..|+|...|+..|
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgN--Pw~CDC~L~WL~~W 43 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGN--PFECDCGLARLPRW 43 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCC--ccccccccHHHHHH
Confidence 57888887 688888888888899999888 66677777766544
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.67 E-value=3.1 Score=43.53 Aligned_cols=36 Identities=28% Similarity=0.214 Sum_probs=18.9
Q ss_pred CCcccEEEcccCcCCCC--CchhhcCCCCCCEEeCcCC
Q 037514 486 VSTLETLDLASNKLGGN--LPDSLGNLLCLEYLGLSEN 521 (636)
Q Consensus 486 ~~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n 521 (636)
.+.+..+.|++|++... +..--..-++|..|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 35566677777766521 1111223355666666666
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.01 E-value=5.1 Score=23.37 Aligned_cols=14 Identities=43% Similarity=0.525 Sum_probs=7.9
Q ss_pred CCCCEEeCcCCCCC
Q 037514 102 SNLQYLDLSYQNLK 115 (636)
Q Consensus 102 ~~L~~L~Ls~n~l~ 115 (636)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34566666666554
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.34 E-value=4.7 Score=23.10 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=9.1
Q ss_pred CCCEEeCcCCCCCccc
Q 037514 103 NLQYLDLSYQNLKEYQ 118 (636)
Q Consensus 103 ~L~~L~Ls~n~l~~~~ 118 (636)
+|++|++++|++++++
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 4556666666655544
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=64.28 E-value=32 Score=35.60 Aligned_cols=279 Identities=16% Similarity=0.018 Sum_probs=128.6
Q ss_pred cCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhc---CCCCcceeccccccCCCcchhhHHhh
Q 037514 307 QNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLK---TQASVFKLTLSNAAISDTIPDWFWGV 383 (636)
Q Consensus 307 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~L~~n~~~~~~~~~~~~~ 383 (636)
...+.+++++++.|++.-. .+..+..... -+.++.|+.+..+-..+. .-..+.+++++.|...+.+|......
T Consensus 162 rpnpr~r~~dls~npi~dk--vpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~ 237 (553)
T KOG4242|consen 162 RPNPRARQHDLSPNPIGDK--VPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKK 237 (553)
T ss_pred CCcchhhhhccCCCccccc--CCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHh
Confidence 3456788888988853322 2222211110 155566655433221111 11246788888888877777654322
Q ss_pred c-CCCccEEECccCcCCcc---CCcccCCCCCCcEEEccCCcCCc----cc----CCCCCCCCCCCEEECCCCCCCCCcc
Q 037514 384 I-SQKLSVIDLSNNKFFGG---ILSSLCSLPSLYWLRLGGNNLSG----EL----STSLPDCSRLTALDIGGNRFLQLPS 451 (636)
Q Consensus 384 ~-~~~L~~L~ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~----~~----~~~~~~l~~L~~L~L~~n~l~~~~~ 451 (636)
. ...++.++.+...+.-. .+...+.-+++...+++.|.... +. .+.+..-.++ +|++..+.....-+
T Consensus 238 a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~l 316 (553)
T KOG4242|consen 238 AGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKL 316 (553)
T ss_pred hhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhh
Confidence 1 03455666666554311 12233445577777777665431 11 1223334455 66666665432211
Q ss_pred hhh-cC-----CCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchh--hcCCCCCCEEeCcCCcc
Q 037514 452 TSM-GN-----LCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDS--LGNLLCLEYLGLSENSF 523 (636)
Q Consensus 452 ~~~-~~-----l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~Ls~n~~ 523 (636)
..+ -. -..=-.+++..|...+.- ....... -..+++|++..|++.++.... +..-++.+.+++.+-.-
T Consensus 317 ks~LLgla~ne~t~g~rldl~~cp~~~a~--vleaci~--g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~ 392 (553)
T KOG4242|consen 317 KSMLLGLAENEATLGARLDLRRCPLERAE--VLEACIF--GQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGD 392 (553)
T ss_pred hhhhcccccccccccccCChhhccccccc--hhhcccc--ceeeeEeeccccccccccccccceeeccccccccccccCC
Confidence 111 00 011123444444443211 0100000 134677888777777554332 23344566666654321
Q ss_pred CC-ccCh------hh--hCCCCCCeEeCcCcccccccc---ccccCCCCCCEEECcCCcceeecCh----hhhcCCCCCC
Q 037514 524 LG-SLPT------SI--GNLSHLRALYLSFNVMSRIIS---ENIGQLSEPYMLDLYGNSWEGVITE----KHFRNLSGLD 587 (636)
Q Consensus 524 ~~-~~p~------~l--~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~l~~L~ 587 (636)
.. ..+. .. ..-.-+..+.++.|.+..-.. .....-+.+..|++++|.... .+. ...+...+++
T Consensus 393 kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd-~gap~lpkalq~n~rlr 471 (553)
T KOG4242|consen 393 KQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGD-GGAPPLPKALQSNCRLR 471 (553)
T ss_pred ceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCccc-CCCCcCccccCCCCccC
Confidence 00 0000 00 111235666666666543221 223445667777777774421 111 2244445666
Q ss_pred eeeCCCCC
Q 037514 588 YLTISSSN 595 (636)
Q Consensus 588 ~L~ls~n~ 595 (636)
....+.|.
T Consensus 472 ~ipds~n~ 479 (553)
T KOG4242|consen 472 PIPDSLNL 479 (553)
T ss_pred CCCCCCCC
Confidence 66666553
No 91
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=60.71 E-value=8 Score=25.27 Aligned_cols=25 Identities=56% Similarity=0.934 Sum_probs=18.3
Q ss_pred HHhHHHHHhcc-CCC-CCCCCCCCCCc
Q 037514 44 EREREALLKFK-GLI-DPSARLSSWKS 68 (636)
Q Consensus 44 ~~~~~~l~~~~-~l~-~~~~~~~~w~~ 68 (636)
+.|+.||++|| ++. ++...+.+|+.
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~ 28 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNP 28 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--T
T ss_pred cHHHHHHHHHHHhcccccCcccccCCC
Confidence 46899999999 887 46688999964
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=57.40 E-value=69 Score=33.35 Aligned_cols=60 Identities=27% Similarity=0.290 Sum_probs=32.7
Q ss_pred CcEEEccCCcCCcccC---CCCCCCCCCCEEECCCCCCCC----CcchhhcCCCCCCeEeCcCCcCC
Q 037514 412 LYWLRLGGNNLSGELS---TSLPDCSRLTALDIGGNRFLQ----LPSTSMGNLCNLHSLDISYNHIT 471 (636)
Q Consensus 412 L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~ 471 (636)
+..+.++.+....... .....-+.+..|++++|.... ..+........++....+.|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 4555666665542211 123344667777777776543 23444445556777766666543
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.97 E-value=9.5 Score=40.12 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=7.8
Q ss_pred CCCEEeCcCCcCCC
Q 037514 210 TLVTLNLRSSQLSG 223 (636)
Q Consensus 210 ~L~~L~L~~n~l~~ 223 (636)
.|++|-+.+|.+..
T Consensus 271 ~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 271 PLEELVLEGNPLCT 284 (585)
T ss_pred CHHHeeecCCcccc
Confidence 35555566665553
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=35.85 E-value=26 Score=19.83 Aligned_cols=12 Identities=33% Similarity=0.191 Sum_probs=6.2
Q ss_pred CCCCEEeCcCCc
Q 037514 511 LCLEYLGLSENS 522 (636)
Q Consensus 511 ~~L~~L~Ls~n~ 522 (636)
++|+.|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 445555555553
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.78 E-value=40 Score=43.06 Aligned_cols=33 Identities=24% Similarity=0.150 Sum_probs=24.7
Q ss_pred eCcCCccCCccChhhhCCCCCCeEeCcCccccc
Q 037514 517 GLSENSFLGSLPTSIGNLSHLRALYLSFNVMSR 549 (636)
Q Consensus 517 ~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~ 549 (636)
||++|+|....+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 577888876666677778888888888877653
Done!