Query 037514
Match_columns 636
No_of_seqs 476 out of 4017
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 22:36:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.2E-62 4.1E-67 554.1 42.1 505 72-601 94-721 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.6E-60 5.3E-65 537.0 40.2 510 68-594 114-737 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.5E-55 1.5E-59 488.3 42.6 505 71-597 42-597 (680)
4 3t6q_A CD180 antigen; protein- 100.0 7.4E-55 2.5E-59 480.1 36.6 509 70-608 27-569 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-52 4.9E-57 468.1 43.4 509 68-600 17-576 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-53 9.3E-58 467.6 32.0 498 69-609 25-568 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2.3E-51 8E-56 452.2 38.4 485 69-578 48-566 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3.4E-51 1.2E-55 450.9 33.7 516 79-632 12-572 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-50 8.6E-55 458.5 28.9 502 70-609 40-570 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 4.7E-49 1.6E-53 448.1 36.8 527 68-630 17-572 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 3.2E-48 1.1E-52 424.3 31.3 496 69-601 21-535 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 8.8E-46 3E-50 402.8 34.2 470 69-600 19-513 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 5.8E-47 2E-51 414.3 24.9 473 70-578 44-537 (570)
14 4eco_A Uncharacterized protein 100.0 2.2E-47 7.6E-52 420.1 21.6 488 44-597 29-600 (636)
15 2z7x_B TOLL-like receptor 1, v 100.0 5.5E-47 1.9E-51 409.3 21.8 454 81-600 3-484 (520)
16 2z81_A CD282 antigen, TOLL-lik 100.0 5.3E-46 1.8E-50 404.6 28.5 486 81-627 8-514 (549)
17 4ecn_A Leucine-rich repeat pro 100.0 3.6E-46 1.2E-50 416.6 25.8 489 41-596 265-839 (876)
18 4g8a_A TOLL-like receptor 4; l 100.0 6E-45 2E-49 403.8 30.7 502 69-610 45-591 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-44 5.9E-49 389.7 25.1 449 69-580 14-489 (520)
20 4eco_A Uncharacterized protein 100.0 5.5E-45 1.9E-49 401.0 20.3 408 68-548 95-600 (636)
21 4ecn_A Leucine-rich repeat pro 100.0 1.1E-44 3.9E-49 404.5 22.2 468 68-602 337-869 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.3E-43 1.1E-47 382.9 23.0 453 81-596 34-509 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7E-42 2.4E-46 372.4 27.8 446 69-580 45-518 (562)
24 4g8a_A TOLL-like receptor 4; l 100.0 6.5E-40 2.2E-44 363.4 37.4 481 69-580 66-588 (635)
25 3v47_A TOLL-like receptor 5B a 100.0 7.1E-40 2.4E-44 347.7 26.3 372 78-552 30-412 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 2.8E-38 9.5E-43 335.4 32.9 370 135-576 30-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 2.7E-38 9.2E-43 332.6 26.4 404 76-597 9-429 (454)
28 3bz5_A Internalin-J, INLJ; leu 100.0 1.3E-37 4.5E-42 327.6 28.7 374 70-592 34-407 (457)
29 1jl5_A Outer protein YOPM; leu 100.0 3.3E-37 1.1E-41 324.3 25.3 394 68-577 24-434 (454)
30 1o6v_A Internalin A; bacterial 100.0 2.4E-35 8.1E-40 313.1 34.5 346 76-549 44-389 (466)
31 1o6v_A Internalin A; bacterial 100.0 5E-35 1.7E-39 310.6 35.4 198 356-577 195-392 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 3.2E-35 1.1E-39 309.4 28.8 360 89-598 29-388 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 7E-35 2.4E-39 310.9 24.7 312 285-609 32-343 (477)
34 2id5_A Lingo-1, leucine rich r 100.0 2E-33 6.7E-38 299.8 32.1 323 81-474 14-336 (477)
35 3o6n_A APL1; leucine-rich repe 100.0 7.8E-33 2.7E-37 287.0 25.6 310 76-471 43-352 (390)
36 4fmz_A Internalin; leucine ric 100.0 2.9E-32 9.9E-37 278.2 28.3 307 74-500 40-346 (347)
37 3o6n_A APL1; leucine-rich repe 100.0 4.5E-32 1.5E-36 281.3 27.0 321 160-584 44-364 (390)
38 4fmz_A Internalin; leucine ric 100.0 2.3E-31 7.7E-36 271.6 31.0 82 487-572 265-346 (347)
39 3oja_B Anopheles plasmodium-re 100.0 4.6E-32 1.6E-36 296.5 26.5 311 76-472 49-359 (597)
40 3oja_B Anopheles plasmodium-re 100.0 3E-31 1E-35 290.1 27.3 321 160-584 50-370 (597)
41 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-32 8.7E-37 273.5 13.5 285 41-397 2-302 (313)
42 1z7x_W Ribonuclease inhibitor; 100.0 5.5E-34 1.9E-38 302.9 1.5 391 135-596 3-439 (461)
43 1ogq_A PGIP-2, polygalacturona 100.0 8.9E-32 3E-36 269.5 16.2 249 336-595 50-302 (313)
44 1z7x_W Ribonuclease inhibitor; 100.0 5.5E-34 1.9E-38 302.9 -3.6 393 101-573 2-441 (461)
45 1xku_A Decorin; proteoglycan, 100.0 8.5E-29 2.9E-33 250.4 29.9 245 136-424 32-277 (330)
46 1xku_A Decorin; proteoglycan, 100.0 2.6E-29 8.9E-34 254.2 25.3 289 286-594 32-329 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 1.6E-29 5.6E-34 255.9 23.6 289 286-595 34-331 (332)
48 2ft3_A Biglycan; proteoglycan, 100.0 6.8E-29 2.3E-33 251.3 26.8 290 103-469 34-331 (332)
49 3ogk_B Coronatine-insensitive 100.0 6.3E-31 2.2E-35 288.5 1.1 409 71-549 66-527 (592)
50 3zyj_A Leucine-rich repeat-con 100.0 2.3E-27 7.8E-32 249.7 20.9 237 360-608 64-301 (440)
51 3zyi_A Leucine-rich repeat-con 100.0 3.2E-27 1.1E-31 249.5 21.3 254 340-608 58-312 (452)
52 3zyj_A Leucine-rich repeat-con 100.0 4.8E-27 1.7E-31 247.2 22.3 235 69-349 57-292 (440)
53 2z80_A TOLL-like receptor 2, v 99.9 3.8E-27 1.3E-31 240.6 19.4 279 284-596 30-313 (353)
54 3ogk_B Coronatine-insensitive 99.9 7.5E-30 2.6E-34 280.0 -0.9 434 131-594 69-548 (592)
55 1ozn_A Reticulon 4 receptor; N 99.9 5.6E-27 1.9E-31 231.8 19.8 231 363-606 14-245 (285)
56 3zyi_A Leucine-rich repeat-con 99.9 6.5E-27 2.2E-31 247.1 20.8 235 69-349 68-303 (452)
57 2z80_A TOLL-like receptor 2, v 99.9 3.1E-27 1.1E-31 241.2 17.4 257 285-549 52-315 (353)
58 2z66_A Variable lymphocyte rec 99.9 1E-27 3.4E-32 239.9 12.9 228 336-595 28-259 (306)
59 2z66_A Variable lymphocyte rec 99.9 2.9E-27 9.9E-32 236.5 15.1 211 69-320 21-233 (306)
60 1ozn_A Reticulon 4 receptor; N 99.9 2.4E-26 8.2E-31 227.3 18.6 228 340-577 15-243 (285)
61 4fcg_A Uncharacterized protein 99.9 3.3E-26 1.1E-30 230.4 18.7 229 338-594 83-311 (328)
62 4fcg_A Uncharacterized protein 99.9 2.1E-26 7.3E-31 231.7 17.0 208 386-601 81-294 (328)
63 2p1m_B Transport inhibitor res 99.9 1.4E-28 4.8E-33 270.0 -3.8 432 131-594 62-541 (594)
64 1wwl_A Monocyte differentiatio 99.9 1E-26 3.6E-31 232.8 9.5 248 336-597 43-309 (312)
65 2p1m_B Transport inhibitor res 99.9 2.2E-28 7.4E-33 268.5 -3.9 445 81-570 46-542 (594)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1E-26 3.4E-31 233.5 7.3 228 347-594 45-272 (317)
67 1wwl_A Monocyte differentiatio 99.9 4.8E-27 1.7E-31 235.2 3.9 252 281-573 39-310 (312)
68 3g06_A SSPH2 (leucine-rich rep 99.9 1E-23 3.6E-28 228.1 28.6 270 78-483 40-309 (622)
69 3g06_A SSPH2 (leucine-rich rep 99.9 2.6E-23 8.7E-28 225.1 31.3 269 102-511 40-308 (622)
70 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-25 5.9E-30 224.5 12.6 239 337-597 11-250 (317)
71 2o6q_A Variable lymphocyte rec 99.9 2E-23 6.9E-28 204.3 21.5 204 387-599 17-220 (270)
72 2z62_A TOLL-like receptor 4, v 99.9 1.1E-23 3.7E-28 207.1 18.2 208 386-600 28-240 (276)
73 3oja_A Leucine-rich immune mol 99.9 1E-24 3.5E-29 231.5 11.2 237 336-592 34-270 (487)
74 3oja_A Leucine-rich immune mol 99.9 3.4E-24 1.1E-28 227.5 13.3 217 359-597 33-250 (487)
75 2z62_A TOLL-like receptor 4, v 99.9 2.7E-23 9.1E-28 204.3 18.1 209 360-576 28-241 (276)
76 2o6q_A Variable lymphocyte rec 99.9 1E-22 3.5E-27 199.2 21.4 206 361-576 17-222 (270)
77 1p9a_G Platelet glycoprotein I 99.9 1.2E-22 4E-27 200.5 18.3 198 386-596 10-207 (290)
78 3goz_A Leucine-rich repeat-con 99.9 6.2E-24 2.1E-28 217.3 7.2 255 341-598 3-298 (362)
79 3rfs_A Internalin B, repeat mo 99.9 1.2E-22 4.2E-27 198.9 15.6 135 157-320 81-215 (272)
80 2ca6_A RAN GTPase-activating p 99.9 9.2E-24 3.2E-28 218.3 6.5 246 351-600 23-319 (386)
81 1p9a_G Platelet glycoprotein I 99.9 1.3E-21 4.6E-26 192.9 19.1 202 358-573 8-209 (290)
82 4glp_A Monocyte differentiatio 99.9 2E-22 6.8E-27 201.5 13.2 204 386-597 91-307 (310)
83 4glp_A Monocyte differentiatio 99.9 2.8E-22 9.6E-27 200.4 13.9 229 335-573 63-308 (310)
84 3rfs_A Internalin B, repeat mo 99.9 9.9E-22 3.4E-26 192.4 17.0 179 386-578 63-241 (272)
85 2xwt_C Thyrotropin receptor; s 99.9 5E-22 1.7E-26 190.6 12.2 197 386-594 31-236 (239)
86 3goz_A Leucine-rich repeat-con 99.9 3E-22 1E-26 204.8 11.0 221 356-576 46-301 (362)
87 2ast_B S-phase kinase-associat 99.9 1.2E-22 4.1E-27 205.9 7.3 246 338-599 49-308 (336)
88 3m19_A Variable lymphocyte rec 99.9 4.1E-21 1.4E-25 185.7 17.7 180 387-574 15-194 (251)
89 2xwt_C Thyrotropin receptor; s 99.9 1.8E-21 6E-26 186.9 13.8 204 68-320 24-236 (239)
90 2ca6_A RAN GTPase-activating p 99.9 3.2E-23 1.1E-27 214.2 1.7 207 386-594 94-340 (386)
91 3m19_A Variable lymphocyte rec 99.9 1.4E-20 4.8E-25 181.9 19.2 177 411-596 15-191 (251)
92 1h6u_A Internalin H; cell adhe 99.9 1.7E-20 5.7E-25 187.0 18.6 196 358-577 39-234 (308)
93 1h6u_A Internalin H; cell adhe 99.8 2.4E-20 8.2E-25 185.8 18.3 211 362-598 21-231 (308)
94 2ast_B S-phase kinase-associat 99.8 4.9E-21 1.7E-25 194.0 11.9 224 360-594 47-282 (336)
95 2o6s_A Variable lymphocyte rec 99.8 1.4E-20 4.7E-25 176.4 13.8 162 78-258 28-189 (208)
96 2o6s_A Variable lymphocyte rec 99.8 1.3E-18 4.3E-23 163.0 19.9 179 81-286 10-190 (208)
97 4ay9_X Follicle-stimulating ho 99.8 1.3E-19 4.5E-24 184.1 12.9 181 336-524 30-215 (350)
98 4ay9_X Follicle-stimulating ho 99.8 4.5E-19 1.6E-23 180.2 15.6 114 131-247 50-167 (350)
99 2v9t_B SLIT homolog 2 protein 99.8 5.5E-19 1.9E-23 166.6 14.2 133 78-221 32-164 (220)
100 2v9t_B SLIT homolog 2 protein 99.8 4.3E-19 1.5E-23 167.3 12.4 161 413-608 14-174 (220)
101 1h6t_A Internalin B; cell adhe 99.8 2.5E-18 8.5E-23 169.7 15.4 192 362-577 26-217 (291)
102 1h6t_A Internalin B; cell adhe 99.8 3.5E-18 1.2E-22 168.6 16.4 173 74-299 42-214 (291)
103 2xot_A Amphoterin-induced prot 99.8 1.1E-18 3.8E-23 178.0 13.1 155 436-596 41-201 (361)
104 3cvr_A Invasion plasmid antige 99.8 3.5E-18 1.2E-22 182.5 16.7 182 361-577 60-248 (571)
105 3cvr_A Invasion plasmid antige 99.8 1.1E-17 3.8E-22 178.7 19.8 180 386-599 59-245 (571)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 6.5E-18 2.2E-22 159.3 15.6 155 414-576 15-170 (220)
107 3e6j_A Variable lymphocyte rec 99.8 6.7E-18 2.3E-22 160.3 15.6 136 102-250 40-175 (229)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 4E-18 1.4E-22 160.7 13.9 162 436-608 13-175 (220)
109 3e6j_A Variable lymphocyte rec 99.8 3.9E-17 1.3E-21 155.0 19.5 143 68-224 32-174 (229)
110 1m9s_A Internalin B; cell inva 99.7 1.7E-17 5.7E-22 179.4 17.6 189 362-573 23-211 (605)
111 4ezg_A Putative uncharacterize 99.7 4.6E-18 1.6E-22 157.5 10.1 155 74-248 40-195 (197)
112 2xot_A Amphoterin-induced prot 99.7 1.1E-17 3.9E-22 170.5 14.0 176 363-548 21-202 (361)
113 1xeu_A Internalin C; cellular 99.7 1.1E-17 3.9E-22 162.2 12.3 156 73-253 36-191 (263)
114 4ezg_A Putative uncharacterize 99.7 1.4E-17 5E-22 154.2 11.4 156 97-299 39-195 (197)
115 1m9s_A Internalin B; cell inva 99.7 3.8E-17 1.3E-21 176.6 15.1 173 357-550 40-212 (605)
116 1xeu_A Internalin C; cellular 99.7 3.9E-17 1.3E-21 158.4 10.8 167 360-572 19-185 (263)
117 1dce_A Protein (RAB geranylger 99.7 3.4E-19 1.1E-23 191.6 -7.9 122 460-591 443-567 (567)
118 1w8a_A SLIT protein; signaling 99.7 2.7E-16 9.4E-21 144.7 12.1 108 488-596 30-138 (192)
119 2wfh_A SLIT homolog 2 protein 99.7 3.1E-16 1.1E-20 144.2 12.3 138 461-610 13-150 (193)
120 3sb4_A Hypothetical leucine ri 99.7 1.1E-17 3.9E-22 168.3 2.8 102 359-464 225-327 (329)
121 3sb4_A Hypothetical leucine ri 99.7 1.9E-16 6.3E-21 159.4 10.2 197 386-590 101-327 (329)
122 1dce_A Protein (RAB geranylger 99.7 2.4E-18 8.2E-23 184.9 -4.4 202 335-566 348-567 (567)
123 2ell_A Acidic leucine-rich nuc 99.6 4.7E-16 1.6E-20 140.0 10.9 135 78-226 24-163 (168)
124 1w8a_A SLIT protein; signaling 99.6 1.7E-15 5.9E-20 139.3 13.6 130 81-248 11-140 (192)
125 4b8c_D Glucose-repressible alc 99.6 2.1E-16 7.1E-21 175.3 7.7 192 340-548 205-404 (727)
126 2je0_A Acidic leucine-rich nuc 99.6 9E-16 3.1E-20 135.1 10.0 128 78-218 17-149 (149)
127 4b8c_D Glucose-repressible alc 99.6 7.5E-16 2.5E-20 170.9 10.2 195 78-295 173-369 (727)
128 2ell_A Acidic leucine-rich nuc 99.6 3.9E-15 1.3E-19 134.0 12.2 106 488-596 50-159 (168)
129 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.8E-19 133.8 14.5 92 156-248 49-140 (193)
130 2je0_A Acidic leucine-rich nuc 99.6 8.7E-15 3E-19 128.7 12.6 127 410-543 17-148 (149)
131 2o6r_A Variable lymphocyte rec 99.6 2.9E-14 1E-18 129.4 15.2 95 156-251 47-141 (177)
132 4fdw_A Leucine rich hypothetic 99.6 8E-14 2.7E-18 143.2 19.3 268 285-595 113-381 (401)
133 2o6r_A Variable lymphocyte rec 99.6 6.1E-14 2.1E-18 127.2 16.1 131 80-224 9-139 (177)
134 4fdw_A Leucine rich hypothetic 99.6 1.3E-13 4.6E-18 141.5 20.1 230 351-600 127-361 (401)
135 4fs7_A Uncharacterized protein 99.5 2.1E-13 7.3E-18 140.6 19.8 107 354-468 270-376 (394)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1.6E-14 5.6E-19 130.8 9.8 132 73-220 14-151 (176)
137 4fs7_A Uncharacterized protein 99.5 4.1E-13 1.4E-17 138.5 19.2 147 428-589 247-393 (394)
138 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-14 3.7E-19 132.0 6.0 136 96-248 13-154 (176)
139 3g39_A Variable lymphocyte rec 99.5 1.7E-13 5.8E-18 123.1 10.1 105 490-598 12-116 (170)
140 2r9u_A Variable lymphocyte rec 99.4 6.9E-13 2.4E-17 119.5 11.5 107 490-600 15-121 (174)
141 1ds9_A Outer arm dynein; leuci 99.4 2.8E-15 9.7E-20 138.8 -5.7 98 490-590 73-180 (198)
142 1ds9_A Outer arm dynein; leuci 99.4 6.6E-15 2.3E-19 136.3 -4.0 154 407-572 15-185 (198)
143 3g39_A Variable lymphocyte rec 99.4 3.4E-12 1.2E-16 114.5 13.6 105 80-198 11-115 (170)
144 2r9u_A Variable lymphocyte rec 99.4 3.8E-12 1.3E-16 114.6 12.9 105 81-199 15-119 (174)
145 3un9_A NLR family member X1; l 99.3 1.5E-13 5.2E-18 139.6 -0.2 162 386-572 72-252 (372)
146 4gt6_A Cell surface protein; l 99.3 2E-10 6.7E-15 118.4 22.3 103 386-499 288-390 (394)
147 3un9_A NLR family member X1; l 99.3 9.5E-13 3.2E-17 133.8 4.0 160 434-597 72-252 (372)
148 2ifg_A High affinity nerve gro 99.3 7.5E-12 2.6E-16 126.8 9.4 102 491-596 12-115 (347)
149 4gt6_A Cell surface protein; l 99.2 8.2E-10 2.8E-14 113.7 23.4 334 174-595 52-389 (394)
150 2ifg_A High affinity nerve gro 99.1 4.9E-10 1.7E-14 113.3 11.9 103 82-198 12-116 (347)
151 4h09_A Hypothetical leucine ri 99.0 3.2E-08 1.1E-12 101.2 23.4 80 386-467 263-342 (379)
152 4h09_A Hypothetical leucine ri 99.0 5.8E-08 2E-12 99.3 22.0 103 487-593 240-342 (379)
153 2ra8_A Uncharacterized protein 98.9 1.1E-09 3.9E-14 110.1 6.8 84 509-595 250-341 (362)
154 2ra8_A Uncharacterized protein 98.9 9.4E-10 3.2E-14 110.7 6.2 159 407-570 169-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 4.9E-08 1.7E-12 88.5 6.0 13 432-444 34-46 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 5.7E-08 1.9E-12 88.0 5.6 117 454-571 32-163 (185)
157 3rw6_A Nuclear RNA export fact 98.4 9.4E-08 3.2E-12 91.0 3.1 83 508-592 167-259 (267)
158 3rw6_A Nuclear RNA export fact 98.2 1.1E-06 3.9E-11 83.5 5.8 80 159-240 168-257 (267)
159 3e4g_A ATP synthase subunit S, 98.1 8.8E-07 3E-11 78.0 3.0 83 488-570 62-150 (176)
160 3e4g_A ATP synthase subunit S, 98.1 2E-06 7E-11 75.6 3.7 88 434-522 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 8.2E-05 2.8E-09 66.7 5.0 88 507-594 66-167 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00015 5E-09 65.1 6.5 68 432-500 39-111 (197)
163 3rfe_A Platelet glycoprotein I 97.4 0.00013 4.4E-09 61.2 5.0 68 538-610 11-79 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0033 1.1E-07 52.5 5.9 37 536-572 32-68 (130)
165 2lz0_A Uncharacterized protein 62.1 7.2 0.00025 30.1 3.8 41 552-594 13-53 (100)
166 2lz0_A Uncharacterized protein 62.1 9.8 0.00034 29.4 4.5 39 403-442 13-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-62 Score=554.15 Aligned_cols=505 Identities=26% Similarity=0.324 Sum_probs=396.2
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCCc--cccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCC
Q 037514 72 EFVYSLKKLKLLDLSESSFSGMLPP--NIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSK 149 (636)
Q Consensus 72 ~~~~~l~~L~~L~Ls~~~i~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 149 (636)
+.|.++++|++|+|++|.++|.+|. .++++++|++|++++|.+++..+.. .+.++++|++|++++|.+++
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~~~~l~~L~~L~Ls~n~l~~ 165 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS--------GGLKLNSLEVLDLSANSISG 165 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCC--------SCCCCTTCSEEECCSSCCEE
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHH--------HhccCCCCCEEECCCCccCC
Confidence 5777888999999999998888887 8888999999999988776533221 02344445555554444443
Q ss_pred CCChh-----------------------hhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCcccc
Q 037514 150 VTNWL-----------------------QVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLF 206 (636)
Q Consensus 150 ~~~~~-----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~ 206 (636)
..... ..+..+++|++|++++|.+.+.+|. +.++++|++|++++|.+++.+|..+.
T Consensus 166 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~ 244 (768)
T 3rgz_A 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 244 (768)
T ss_dssp ETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTT
T ss_pred cCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHh
Confidence 31100 1125677788888888887776666 78888888888888888877888888
Q ss_pred CCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhcc-ccCCcccchhhc--cCcCcccccccccC
Q 037514 207 NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTL-SGCNNSTLETLE--TQRMNGTISENIGQ 283 (636)
Q Consensus 207 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l-~~~~~~~L~~L~--~~~~~~~~~~~l~~ 283 (636)
++++|++|++++|.+.+.+|. ..+++|++|++++|.+.+.+|..+... + +|+.|+ .+++.+.+|..++.
T Consensus 245 ~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~L~~n~l~~~ip~~~~~~~~-----~L~~L~Ls~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 245 TCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACD-----TLTGLDLSGNHFYGAVPPFFGS 316 (768)
T ss_dssp TCSSCCEEECCSSCCEESCCC---CCCTTCCEEECCSSEEEESCCCCSCTTCT-----TCSEEECCSSEEEECCCGGGGG
T ss_pred cCCCCCEEECCCCcccCccCc---cccCCCCEEECcCCccCCccCHHHHhhcC-----cCCEEECcCCcCCCccchHHhc
Confidence 888888888888888766553 266677777777777776666655443 4 566665 55666667777777
Q ss_pred CCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCC-----------------------ccEEecCCCCCC--CCCc
Q 037514 284 LAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNK-----------------------SLVFTMRSDWIP--PFSL 338 (636)
Q Consensus 284 l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~-----------------------~~~~~~~~~~~~--~~~L 338 (636)
+++|++|++++|++.+.+|...+.++++|++|++++|.+ ...+..+..+.. +++|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 777777777777776666665566666666666666621 222233333333 5678
Q ss_pred cEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEcc
Q 037514 339 RQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLG 418 (636)
Q Consensus 339 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~ 418 (636)
++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+ ++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL--SKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC--TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC--CCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 888888888888888889999999999999999999999888888 899999999999998899999999999999999
Q ss_pred CCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCc
Q 037514 419 GNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNK 498 (636)
Q Consensus 419 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 498 (636)
+|++++.+|..+..+++|++|++++|++++..|..++.+++|++|++++|++++.+|..+..+ ++|++|++++|+
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-----RSLIWLDLNTNL 549 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC-----TTCCEEECCSSE
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC-----CCCCEEECCCCc
Confidence 999998899999999999999999999998888889999999999999999998888876643 677999999999
Q ss_pred CCCCCchhh----------------------------------------------------------------------c
Q 037514 499 LGGNLPDSL----------------------------------------------------------------------G 508 (636)
Q Consensus 499 l~~~~~~~l----------------------------------------------------------------------~ 508 (636)
+++.+|..+ +
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 887777543 3
Q ss_pred CCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCe
Q 037514 509 NLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDY 588 (636)
Q Consensus 509 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 588 (636)
.+++|+.|||++|++++.+|..++++++|+.|+|++|++++.+|..++++++|+.|||++|+++|.+|.. +..+++|++
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~ 708 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTE 708 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG-GGGCCCCSE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCE
Confidence 3567899999999999999999999999999999999999999999999999999999999999999986 889999999
Q ss_pred eeCCCCCCCcccc
Q 037514 589 LTISSSNSSLVFN 601 (636)
Q Consensus 589 L~ls~n~~~~~~~ 601 (636)
|++++|+++...+
T Consensus 709 L~ls~N~l~g~iP 721 (768)
T 3rgz_A 709 IDLSNNNLSGPIP 721 (768)
T ss_dssp EECCSSEEEEECC
T ss_pred EECcCCcccccCC
Confidence 9999997764443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-60 Score=536.95 Aligned_cols=510 Identities=24% Similarity=0.321 Sum_probs=412.2
Q ss_pred cccCc--cccCCCCCCEEeCCCCCCCCCCCccc-cCCCCCCEEeCcCCCCCccccccc--c------c--------cccc
Q 037514 68 SPIPE--FVYSLKKLKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKE--L------W--------VSDL 128 (636)
Q Consensus 68 ~~~p~--~~~~l~~L~~L~Ls~~~i~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~--~------~--------~~~~ 128 (636)
+.+|. .++++++|++|+|++|.+.+..|..+ .++++|++|++++|.+++..+... + . ..+.
T Consensus 114 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 193 (768)
T 3rgz_A 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193 (768)
T ss_dssp EEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESC
T ss_pred CcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccccc
Confidence 55777 89999999999999999988888776 788999999999988876543210 0 0 0001
Q ss_pred ccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCC
Q 037514 129 IWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNI 208 (636)
Q Consensus 129 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l 208 (636)
..+..+++|++|++++|.+++... .++++++|++|++++|.+.+..+..+.++++|++|++++|.+.+.+|.. .+
T Consensus 194 ~~~~~l~~L~~L~Ls~n~l~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l 268 (768)
T 3rgz_A 194 VDVSRCVNLEFLDVSSNNFSTGIP---FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL 268 (768)
T ss_dssp CBCTTCTTCCEEECCSSCCCSCCC---BCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CC
T ss_pred CCcccCCcCCEEECcCCcCCCCCc---ccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--cc
Confidence 124677788888888888877532 3778888888888888888777777888888888888888877766653 66
Q ss_pred CCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhc--cCcCccccccc-ccCCC
Q 037514 209 STLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRMNGTISEN-IGQLA 285 (636)
Q Consensus 209 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~~~~~~~~-l~~l~ 285 (636)
++|++|++++|.+++.+|......+++|++|++++|.+.+..|..+..++ +|+.|+ .+.+.|.+|.. +..++
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~-----~L~~L~L~~n~l~~~ip~~~l~~l~ 343 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-----LLESLALSSNNFSGELPMDTLLKMR 343 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT-----TCCEEECCSSEEEEECCHHHHTTCT
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC-----CccEEECCCCcccCcCCHHHHhcCC
Confidence 77777777777777666653333346777777777777666666666665 555544 44444444443 44555
Q ss_pred CCCEEEccCCc-------------------------CccccChhhhcC--CCCCCEEEccCCCCccEEecCCCCCCCCCc
Q 037514 286 ELVALNLYRNS-------------------------WKGIITENHFQN--LTKLNSLYLSSSNKSLVFTMRSDWIPPFSL 338 (636)
Q Consensus 286 ~L~~L~l~~n~-------------------------~~~~i~~~~~~~--l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L 338 (636)
+|++|++++|+ +.+.++. .+.. +++|++|++++| ...+..+..+..+++|
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~~~~~~~L~~L~L~~n--~l~~~~p~~l~~l~~L 420 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQNPKNTLQELYLQNN--GFTGKIPPTLSNCSEL 420 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTTCSTTCCCCEEECCSS--EEEEECCGGGGGCTTC
T ss_pred CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh-hhhhcccCCccEEECCCC--ccccccCHHHhcCCCC
Confidence 55555555554 4444443 2333 678999999999 7777888899999999
Q ss_pred cEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEcc
Q 037514 339 RQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLG 418 (636)
Q Consensus 339 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~ 418 (636)
++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+ ++|++|++++|++++..|..+..+++|++|+++
T Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV--KTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC--TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC--CCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence 999999999999999999999999999999999999999999888 999999999999999999999999999999999
Q ss_pred CCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhc---------------
Q 037514 419 GNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSA--------------- 483 (636)
Q Consensus 419 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~--------------- 483 (636)
+|++++.+|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++.+|..+.....
T Consensus 499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence 99999999999999999999999999999988889999999999999999999888876543110
Q ss_pred --------------------------------------------------CCCCcccEEEcccCcCCCCCchhhcCCCCC
Q 037514 484 --------------------------------------------------CNVSTLETLDLASNKLGGNLPDSLGNLLCL 513 (636)
Q Consensus 484 --------------------------------------------------~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L 513 (636)
..+++|++|++++|++++.+|..++++++|
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 658 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence 113678999999999999999999999999
Q ss_pred CEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCC
Q 037514 514 EYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISS 593 (636)
Q Consensus 514 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~ 593 (636)
+.|+|++|++++.+|..++++++|+.|||++|++++.+|..+..++.|++|++++|+++|.+|+. ..+.++....+.+
T Consensus 659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~--~~~~~~~~~~~~g 736 (768)
T 3rgz_A 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM--GQFETFPPAKFLN 736 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS--SSGGGSCGGGGCS
T ss_pred CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc--hhhccCCHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999985 2445566677788
Q ss_pred C
Q 037514 594 S 594 (636)
Q Consensus 594 n 594 (636)
|
T Consensus 737 N 737 (768)
T 3rgz_A 737 N 737 (768)
T ss_dssp C
T ss_pred C
Confidence 8
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.5e-55 Score=488.29 Aligned_cols=505 Identities=21% Similarity=0.195 Sum_probs=337.2
Q ss_pred CccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCC
Q 037514 71 PEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKV 150 (636)
Q Consensus 71 p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 150 (636)
+..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++++... |.++++|++|++++|.++.+
T Consensus 42 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~---------~~~l~~L~~L~L~~n~l~~~ 112 (680)
T 1ziw_A 42 AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT---------FAFCTNLTELHLMSNSIQKI 112 (680)
T ss_dssp GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT---------TTTCTTCSEEECCSSCCCCC
T ss_pred HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhh---------hccCCCCCEEECCCCccCcc
Confidence 346888888888888888888888888888888888888888888776532 78888888888888888877
Q ss_pred CChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCcccc--CCCCCCEEeCcCCcCCCCCCCC
Q 037514 151 TNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLF--NISTLVTLNLRSSQLSGSIPKF 228 (636)
Q Consensus 151 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~ 228 (636)
+. ..|+++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+.+..|.
T Consensus 113 ~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~- 189 (680)
T 1ziw_A 113 KN--NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG- 189 (680)
T ss_dssp CS--CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT-
T ss_pred Ch--hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh-
Confidence 43 5688888888888888888888888888888888888888888886666554 557888888888888754432
Q ss_pred CCCC---------------------------CCCCCEEEcccccCccccchhhhccccCCcccchhhc--cCcCcccccc
Q 037514 229 PPGK---------------------------MCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRMNGTISE 279 (636)
Q Consensus 229 ~~~~---------------------------l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~~~~~~~ 279 (636)
.+.. .++|+.|++++|.+.+..+..+..++ ..+|+.|+ .+++.+..|.
T Consensus 190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~---~~~L~~L~Ls~n~l~~~~~~ 266 (680)
T 1ziw_A 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK---WTNLTMLDLSYNNLNVVGND 266 (680)
T ss_dssp GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG---GSCCCEEECTTSCCCEECTT
T ss_pred hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC---cCCCCEEECCCCCcCccCcc
Confidence 2222 25677788888888777777776654 11377776 6677777788
Q ss_pred cccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccE-------EecCCCCCCCCCccEEEccCCCCCcCC
Q 037514 280 NIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLV-------FTMRSDWIPPFSLRQMAINDCQLGSAF 352 (636)
Q Consensus 280 ~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~-------~~~~~~~~~~~~L~~L~l~~~~~~~~~ 352 (636)
.++.+++|++|++++|++.+..+. .|..+++|+.|++++|..... ......+..+++|++|++++|.+.+..
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~ 345 (680)
T 1ziw_A 267 SFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345 (680)
T ss_dssp TTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC
T ss_pred cccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC
Confidence 888889999999999988875554 788888888888887632110 111225667888999999999988888
Q ss_pred ChhhcCCCCcceeccccccCCCc--chhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccC-CC
Q 037514 353 PSWLKTQASVFKLTLSNAAISDT--IPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELS-TS 429 (636)
Q Consensus 353 ~~~l~~~~~L~~L~L~~n~~~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~ 429 (636)
+..+..+++|++|++++|.+... ....+.....++|+.|++++|++++..+..+..+++|++|++++|.+.+.++ ..
T Consensus 346 ~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 425 (680)
T 1ziw_A 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGG
T ss_pred hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccc
Confidence 88888888888888888764322 2222322211467777777777776666667777777777777777765444 45
Q ss_pred CCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCC--CchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhh
Q 037514 430 LPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT--GEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSL 507 (636)
Q Consensus 430 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l 507 (636)
+.++++|++|++++|++.+..+..+..+++|+.|++++|.+. +..|..+. .+++|++|++++|++++..+..+
T Consensus 426 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-----~l~~L~~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-----PLRNLTILDLSNNNIANINDDML 500 (680)
T ss_dssp GTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-----TCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-----cCCCCCEEECCCCCCCcCChhhh
Confidence 666667777777777666555555555555555555555543 22232222 12444555555555554444445
Q ss_pred cCCCCCCEEeCcCCccCCccC--------hhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhh
Q 037514 508 GNLLCLEYLGLSENSFLGSLP--------TSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKH 579 (636)
Q Consensus 508 ~~l~~L~~L~Ls~n~~~~~~p--------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 579 (636)
.++++|++|++++|++.+..+ ..+.++++|++|++++|+++.+.+..|.++++|+.|++++|+++ .+|...
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~ 579 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASV 579 (680)
T ss_dssp TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhH
Confidence 555555555555555543211 12445555555555555555444444555555555555555555 344444
Q ss_pred hcCCCCCCeeeCCCCCCC
Q 037514 580 FRNLSGLDYLTISSSNSS 597 (636)
Q Consensus 580 ~~~l~~L~~L~ls~n~~~ 597 (636)
|..+++|+.|++++|.++
T Consensus 580 ~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 580 FNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp TTTCTTCCEEECTTSCCC
T ss_pred hCCCCCCCEEECCCCcCC
Confidence 555555555555555443
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.4e-55 Score=480.09 Aligned_cols=509 Identities=18% Similarity=0.196 Sum_probs=390.4
Q ss_pred cCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCC
Q 037514 70 IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSK 149 (636)
Q Consensus 70 ~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 149 (636)
+|..+.. ++++|++++|.+++..|.+|+++++|++|++++|.++++.+.. |.++++|++|++++|.++.
T Consensus 27 iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---------~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 27 IPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT---------FQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp CCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTT---------TTTCTTCCEEECTTCCCSE
T ss_pred CcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhh---------ccCccccCeeeCCCCcccc
Confidence 4444432 6677777777777666777777777777777777776654432 6777777777777777766
Q ss_pred CCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCC
Q 037514 150 VTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFP 229 (636)
Q Consensus 150 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 229 (636)
.+ +..|+++++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..| ..
T Consensus 96 ~~--~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~ 172 (606)
T 3t6q_A 96 MA--ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK-ED 172 (606)
T ss_dssp EC--TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH-HH
T ss_pred cC--hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh-hh
Confidence 62 2467777777777777777776666667777777777777777776333344447777777777777764322 12
Q ss_pred CCCCCCCC--EEEcccccCccccchhhhcc-----------------ccCCcccchhhc--------cCcCccccccccc
Q 037514 230 PGKMCNLR--RLDLAINGFSGEKEQFIQTL-----------------SGCNNSTLETLE--------TQRMNGTISENIG 282 (636)
Q Consensus 230 ~~~l~~L~--~L~L~~n~~~~~~~~~l~~l-----------------~~~~~~~L~~L~--------~~~~~~~~~~~l~ 282 (636)
++.+++|+ .|++++|.+.+..+..+... .++....++.+. ...+.+..+..+.
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred hhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 56666777 67777777776666554321 000011111111 1112222222222
Q ss_pred CCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCc
Q 037514 283 QLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASV 362 (636)
Q Consensus 283 ~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 362 (636)
.. +|+.|++++|.+.+ ++...|..+++|++|++++|.+. .++..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 253 ~~-~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~---~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 327 (606)
T 3t6q_A 253 EM-SVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS---ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327 (606)
T ss_dssp GS-EEEEEECTTCCCSS-CCTTTTTTCTTCSEEECTTSCCS---CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred cC-ceeEEEeecCccCc-cCHHHhccccCCCEEeccCCccC---CCChhhcccccCCEEECccCCcCcCchhhhhccCcC
Confidence 22 78999999999988 55558999999999999999543 567778889999999999999998888899999999
Q ss_pred ceeccccccCCCcchh-hHHhhcCCCccEEECccCcCCccC--CcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEE
Q 037514 363 FKLTLSNAAISDTIPD-WFWGVISQKLSVIDLSNNKFFGGI--LSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTAL 439 (636)
Q Consensus 363 ~~L~L~~n~~~~~~~~-~~~~~~~~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 439 (636)
++|++++|.+.+..+. .+..+ ++|++|++++|.+.+.. +..+..+++|++|++++|++.+..+..+..+++|++|
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENL--ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTC--TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred CEEECCCCCcccccchhhhhcc--CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 9999999999866654 46666 89999999999998765 7788999999999999999998889999999999999
Q ss_pred ECCCCCCCCCcc-hhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCC---CchhhcCCCCCCE
Q 037514 440 DIGGNRFLQLPS-TSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGN---LPDSLGNLLCLEY 515 (636)
Q Consensus 440 ~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~ 515 (636)
++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.. +++|++|++++|++++. .+..+..+++|+.
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG-----LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT-----CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC-----CCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 999999987654 44889999999999999998877776553 47789999999999862 3367899999999
Q ss_pred EeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCC
Q 037514 516 LGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN 595 (636)
Q Consensus 516 L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 595 (636)
|++++|++.+..|..|..+++|++|++++|++++..|..+..++.| +|++++|++++ ++...+..+++|+.|++++|+
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI-ILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC-CCGGGHHHHHTSSEEECTTCC
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc-cCHhhcccCCCCCEEeCCCCC
Confidence 9999999998889999999999999999999999999999999999 99999999995 566668899999999999995
Q ss_pred CCccccccccccc
Q 037514 596 SSLVFNIRHDWIA 608 (636)
Q Consensus 596 ~~~~~~~~~~~~~ 608 (636)
..|+|...|+.
T Consensus 559 --~~c~c~~~~~~ 569 (606)
T 3t6q_A 559 --LDCTCSNIYFL 569 (606)
T ss_dssp --EECSGGGHHHH
T ss_pred --ccccCCcHHHH
Confidence 55566544443
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-52 Score=468.08 Aligned_cols=509 Identities=20% Similarity=0.247 Sum_probs=427.5
Q ss_pred cccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccC
Q 037514 68 SPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKL 147 (636)
Q Consensus 68 ~~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 147 (636)
..+|..+. +++++|++++|.+++..+..|+++++|++|++++|.++++.+.. +.++++|++|++++|.+
T Consensus 17 ~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 17 TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL---------CQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTH---------HHHCTTCCEEECCSSCC
T ss_pred cccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHH---------HhcccCcCEEECCCCcc
Confidence 34666554 69999999999999888888999999999999999998876543 78899999999999999
Q ss_pred CCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCC
Q 037514 148 SKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPK 227 (636)
Q Consensus 148 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 227 (636)
+.++. ..|+++++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+++..+.
T Consensus 86 ~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 86 SQLSD--KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCT--TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred CccCh--hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 98854 5799999999999999999998889999999999999999999998888999999999999999999854332
Q ss_pred C-CCCCCCCCCEEEcccccCccccchhhhccccCC----------------------cccchhhc--cCcCccccccccc
Q 037514 228 F-PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCN----------------------NSTLETLE--TQRMNGTISENIG 282 (636)
Q Consensus 228 ~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~----------------------~~~L~~L~--~~~~~~~~~~~l~ 282 (636)
. ....+++|++|++++|.+.+..+..+..++.+. ..+++.|+ .+.+.+..|..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 1 134568999999999999998888777665221 12444444 5667777788887
Q ss_pred CCCC--CCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCc-----CCC--
Q 037514 283 QLAE--LVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGS-----AFP-- 353 (636)
Q Consensus 283 ~l~~--L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~-- 353 (636)
.++. |++|++++|++.+..+. .|..+++|++|++++| ......+..+..+.+|++|++++|...+ .+|
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGND-SFAWLPQLEYFFLEYN--NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSC--CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred ccCcCCCCEEECCCCCcCccCcc-cccCcccccEeeCCCC--ccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence 7754 99999999999885444 7899999999999999 6667777888899999999999876543 223
Q ss_pred --hhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCcc--CCcccCC--CCCCcEEEccCCcCCcccC
Q 037514 354 --SWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGG--ILSSLCS--LPSLYWLRLGGNNLSGELS 427 (636)
Q Consensus 354 --~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~--l~~L~~L~L~~n~l~~~~~ 427 (636)
..+..+++|++|++++|.+.+..+.++..+ ++|++|++++|.+... ....+.. .++|+.|++++|++.+..+
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL--INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC--TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred ChhhcccCCCCCEEECCCCccCCCChhHhccc--cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh
Confidence 267889999999999999999888888887 8999999999975432 2222332 3689999999999998888
Q ss_pred CCCCCCCCCCEEECCCCCCCC-CcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCC--CCCc
Q 037514 428 TSLPDCSRLTALDIGGNRFLQ-LPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG--GNLP 504 (636)
Q Consensus 428 ~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~ 504 (636)
..+..+++|++|++++|.+.+ .++..+..+++|++|++++|++.+..+..+. .+++|++|++++|.+. +..|
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~~p 473 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-----LVPSLQRLMLRRVALKNVDSSP 473 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-----TCTTCCEEECTTSCCBCTTCSS
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-----cCcccccchhccccccccccCC
Confidence 999999999999999999986 4446789999999999999998876666554 3478899999999986 5688
Q ss_pred hhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcccccccc--------ccccCCCCCCEEECcCCcceeecC
Q 037514 505 DSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIIS--------ENIGQLSEPYMLDLYGNSWEGVIT 576 (636)
Q Consensus 505 ~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~ 576 (636)
..+..+++|+.|++++|++.+..+..|.++++|++|++++|++++..+ ..+..+++|++|++++|++. .+|
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~ 552 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIP 552 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCC
T ss_pred cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCC
Confidence 899999999999999999998888889999999999999999987633 23788999999999999998 689
Q ss_pred hhhhcCCCCCCeeeCCCCCCCccc
Q 037514 577 EKHFRNLSGLDYLTISSSNSSLVF 600 (636)
Q Consensus 577 ~~~~~~l~~L~~L~ls~n~~~~~~ 600 (636)
.+.|..+++|++|++++|.++...
T Consensus 553 ~~~~~~l~~L~~L~Ls~N~l~~l~ 576 (680)
T 1ziw_A 553 VEVFKDLFELKIIDLGLNNLNTLP 576 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCC
T ss_pred HHHcccccCcceeECCCCCCCcCC
Confidence 888999999999999999887544
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-53 Score=467.62 Aligned_cols=498 Identities=22% Similarity=0.250 Sum_probs=390.1
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514 69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS 148 (636)
Q Consensus 69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 148 (636)
.+|..+. +++++|++++|.+++..+..|+++++|++|++++|.++++++.. |.++++|++|++++|.++
T Consensus 25 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~---------~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 25 KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA---------WHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT---------TTTCTTCCEEECTTCCCC
T ss_pred cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHH---------hhchhhcCEeECCCCccc
Confidence 3554443 57888888888888777777888888888888888887765432 778888888888888887
Q ss_pred CCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCc-CCCccccCCCCCCEEeCcCCcCCCCCCC
Q 037514 149 KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS-QIPQWLFNISTLVTLNLRSSQLSGSIPK 227 (636)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 227 (636)
..+ +..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|++++..|.
T Consensus 94 ~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 94 SFS--PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCC--TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred ccC--hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 772 3577888888888888888877777778888888888888888875 4677888888888888888887754332
Q ss_pred CCCCCCCCC----CEEEcccccCccccchhhhccccCCcccchhhc--cCcCc-ccccccccCCCCCCEEEc--------
Q 037514 228 FPPGKMCNL----RRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRMN-GTISENIGQLAELVALNL-------- 292 (636)
Q Consensus 228 ~~~~~l~~L----~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~~-~~~~~~l~~l~~L~~L~l-------- 292 (636)
.++.+++| ++|++++|.+.+..+..+... +|+.|+ .+.+. +..|..+.+++.|+.+++
T Consensus 172 -~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~------~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 172 -DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI------KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp -TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC------EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred -hhhhhhccccccceeeccCCCcceeCcccccCc------eeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence 34444443 378888887776555444322 455554 44443 334555555655555544
Q ss_pred -------------------------cCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCC
Q 037514 293 -------------------------YRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQ 347 (636)
Q Consensus 293 -------------------------~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~ 347 (636)
..+.+.+.++. +..+++|+.|++++|... ..+ .+..+++|++|++++|.
T Consensus 245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~---~l~-~l~~~~~L~~L~l~~n~ 318 (606)
T 3vq2_A 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIK---YLE-DVPKHFKWQSLSIIRCQ 318 (606)
T ss_dssp CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCC---CCC-CCCTTCCCSEEEEESCC
T ss_pred CcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccch---hhh-hccccccCCEEEccccc
Confidence 55566665554 888999999999998432 233 67788899999999999
Q ss_pred CCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCcc--CCcccCCCCCCcEEEccCCcCCcc
Q 037514 348 LGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGG--ILSSLCSLPSLYWLRLGGNNLSGE 425 (636)
Q Consensus 348 ~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~ 425 (636)
+ +.+|. + .+++|++|++++|...+.. .+..+ ++|++|++++|.+++. .+..+..+++|++|++++|.+.+
T Consensus 319 l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l--~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~- 390 (606)
T 3vq2_A 319 L-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVAL--PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII- 390 (606)
T ss_dssp C-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCC--TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-
T ss_pred C-ccccc-C-CCCccceeeccCCcCccch--hhccC--CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-
Confidence 9 67774 4 8999999999999665444 34444 8999999999999766 37788899999999999999874
Q ss_pred cCCCCCCCCCCCEEECCCCCCCCCcc-hhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCC-CC
Q 037514 426 LSTSLPDCSRLTALDIGGNRFLQLPS-TSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGG-NL 503 (636)
Q Consensus 426 ~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~ 503 (636)
+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|++++..|..+.. +++|++|++++|++++ ..
T Consensus 391 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~ 465 (606)
T 3vq2_A 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-----LTSLNTLKMAGNSFKDNTL 465 (606)
T ss_dssp ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT-----CTTCCEEECTTCEEGGGEE
T ss_pred chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC-----CCCCCEEECCCCcCCCcch
Confidence 66889999999999999999998876 67899999999999999999877776543 4778999999999997 47
Q ss_pred chhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCC
Q 037514 504 PDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNL 583 (636)
Q Consensus 504 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 583 (636)
|..+..+++|+.|++++|++.+..|..+.++++|++|++++|++++..|..+..+++|++|++++|+++ .+|.. +..+
T Consensus 466 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~-~~~l 543 (606)
T 3vq2_A 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI-LQHF 543 (606)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC-GGGS
T ss_pred HHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh-Hhhh
Confidence 888999999999999999999989999999999999999999999999999999999999999999998 57877 7777
Q ss_pred C-CCCeeeCCCCCCCcccccccccccC
Q 037514 584 S-GLDYLTISSSNSSLVFNIRHDWIAP 609 (636)
Q Consensus 584 ~-~L~~L~ls~n~~~~~~~~~~~~~~~ 609 (636)
+ +|++|++++|+.. |+|...|+..
T Consensus 544 ~~~L~~l~l~~N~~~--c~c~~~~~~~ 568 (606)
T 3vq2_A 544 PKSLAFFNLTNNSVA--CICEHQKFLQ 568 (606)
T ss_dssp CTTCCEEECCSCCCC--CSSTTHHHHT
T ss_pred cccCcEEEccCCCcc--cCCccHHHHH
Confidence 6 6999999999554 5555455443
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.3e-51 Score=452.18 Aligned_cols=485 Identities=17% Similarity=0.145 Sum_probs=414.0
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514 69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS 148 (636)
Q Consensus 69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 148 (636)
..|..|.++++|++|+|++|.+.+..|.+|+++++|++|++++|.+++..+.. ++++++|++|++++|.++
T Consensus 48 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~L~~n~i~ 118 (606)
T 3t6q_A 48 IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA---------LSGPKALKHLFFIQTGIS 118 (606)
T ss_dssp ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT---------TSSCTTCCEEECTTSCCS
T ss_pred CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh---------hcccccccEeeccccCcc
Confidence 34778999999999999999999999999999999999999999998876543 899999999999999999
Q ss_pred CCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCC--EEeCcCCcCCCCCC
Q 037514 149 KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLV--TLNLRSSQLSGSIP 226 (636)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~--~L~L~~n~l~~~~p 226 (636)
.++. ..++++++|++|++++|.+.+.....+..+++|++|++++|.+++..|..+..+++|+ +|++++|.+.+..|
T Consensus 119 ~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 119 SIDF--IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp CGGG--SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred cCCc--chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccCh
Confidence 8732 4689999999999999999986555566699999999999999998888999999999 99999999996544
Q ss_pred CCCCCCCCCCCEEEcccccCcc--------------------------ccchhhhccccCCcccchhhc--cCcCccccc
Q 037514 227 KFPPGKMCNLRRLDLAINGFSG--------------------------EKEQFIQTLSGCNNSTLETLE--TQRMNGTIS 278 (636)
Q Consensus 227 ~~~~~~l~~L~~L~L~~n~~~~--------------------------~~~~~l~~l~~~~~~~L~~L~--~~~~~~~~~ 278 (636)
. . ....+|++|++++|.... ..+..+..+. ..+++.++ .+.+.+..+
T Consensus 197 ~-~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~---~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 197 G-A-FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC---EMSVESINLQKHYFFNISS 271 (606)
T ss_dssp T-T-TTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG---GSEEEEEECTTCCCSSCCT
T ss_pred h-H-hhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh---cCceeEEEeecCccCccCH
Confidence 3 2 344689999998875111 1111111111 12455655 677777777
Q ss_pred ccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCC-hhhc
Q 037514 279 ENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFP-SWLK 357 (636)
Q Consensus 279 ~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~ 357 (636)
..++.+++|++|++++|+++. +|. .+..+++|++|++++| ......+..+..+++|++|++++|.+.+.++ ..+.
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~-lp~-~l~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSE-LPS-GLVGLSTLKKLVLSAN--KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSC-CCS-SCCSCTTCCEEECTTC--CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred HHhccccCCCEEeccCCccCC-CCh-hhcccccCCEEECccC--CcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 889999999999999999985 776 6899999999999999 4555556678889999999999999886665 4589
Q ss_pred CCCCcceeccccccCCCcc--hhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCC-CCCCCC
Q 037514 358 TQASVFKLTLSNAAISDTI--PDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELST-SLPDCS 434 (636)
Q Consensus 358 ~~~~L~~L~L~~n~~~~~~--~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~ 434 (636)
.+++|++|++++|.+.+.. +..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+..+. .+..++
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNL--SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTC--TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred ccCcCCEEECCCCccccccCcchhcccC--CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 9999999999999998876 6777777 8999999999999988899999999999999999999876654 489999
Q ss_pred CCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCC
Q 037514 435 RLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLE 514 (636)
Q Consensus 435 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 514 (636)
+|++|++++|.+.+..+..+..+++|++|++++|++++........+.. +++|++|++++|++++..|..+.++++|+
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT--LGRLEILVLSFCDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG--CTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc--CCCccEEECCCCccCccChhhhccccCCC
Confidence 9999999999999998888999999999999999998632221122232 37889999999999988899999999999
Q ss_pred EEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChh
Q 037514 515 YLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEK 578 (636)
Q Consensus 515 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 578 (636)
.|++++|++.+..|..+.+++.| +|++++|++++.+|..+..+++|+.|++++|++.+..+..
T Consensus 504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp EEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred EEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 99999999999999999999999 9999999999999999999999999999999998876643
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.4e-51 Score=450.90 Aligned_cols=516 Identities=20% Similarity=0.170 Sum_probs=423.4
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhC
Q 037514 79 KLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVN 158 (636)
Q Consensus 79 ~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 158 (636)
.-++++.++++++ .+|..+. +++++|++++|.++++++.. |.++++|++|++++|.++.++ +..|.
T Consensus 12 ~~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~Ls~n~l~~i~--~~~~~ 77 (606)
T 3vq2_A 12 PNITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYS---------FSNFSELQWLDLSRCEIETIE--DKAWH 77 (606)
T ss_dssp TTTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTT---------TTTCTTCCEEECTTCCCCEEC--TTTTT
T ss_pred CCCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhh---------ccCCccCcEEeCCCCcccccC--HHHhh
Confidence 3468999999998 6776655 88999999999999887643 899999999999999999884 36899
Q ss_pred CCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCC-CCCCCCCCCCCCCC
Q 037514 159 ELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSG-SIPKFPPGKMCNLR 237 (636)
Q Consensus 159 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~~l~~L~ 237 (636)
++++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|. .++++++|+
T Consensus 78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~ 156 (606)
T 3vq2_A 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLV 156 (606)
T ss_dssp TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCC
T ss_pred chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCC
Confidence 99999999999999999999999999999999999999999777889999999999999999985 4453 488999999
Q ss_pred EEEcccccCccccchhhhccccCCcccch----hhc--cCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCC
Q 037514 238 RLDLAINGFSGEKEQFIQTLSGCNNSTLE----TLE--TQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTK 311 (636)
Q Consensus 238 ~L~L~~n~~~~~~~~~l~~l~~~~~~~L~----~L~--~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~ 311 (636)
+|++++|.+++..+..++.+. +++ .++ .+.+.+..+..+.. .+|+.|++++|.+.+......+.+++.
T Consensus 157 ~L~Ls~n~l~~~~~~~~~~l~-----~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~ 230 (606)
T 3vq2_A 157 HVDLSYNYIQTITVNDLQFLR-----ENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAG 230 (606)
T ss_dssp EEECCSSCCCEECTTTTHHHH-----HCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTT
T ss_pred EEEccCCcceecChhhhhhhh-----ccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccc
Confidence 999999999999888888777 444 344 66776555555444 489999999999875555557888988
Q ss_pred CCEEEccCCCC-------------------------------ccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCC
Q 037514 312 LNSLYLSSSNK-------------------------------SLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQA 360 (636)
Q Consensus 312 L~~L~L~~n~~-------------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 360 (636)
++.+++..+.. ......+. +..+++|++|++++|.+.. +| .+..++
T Consensus 231 L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~ 307 (606)
T 3vq2_A 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHF 307 (606)
T ss_dssp CEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTC
T ss_pred cccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccc
Confidence 88877642210 12222233 6677899999999999864 45 788899
Q ss_pred CcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcc--cCCCCCCCCCCCE
Q 037514 361 SVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGE--LSTSLPDCSRLTA 438 (636)
Q Consensus 361 ~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~ 438 (636)
+|++|++++|.+ +.+|.. .+ ++|++|++++|+..+.. .+..+++|++|++++|++++. .+..+..+++|++
T Consensus 308 ~L~~L~l~~n~l-~~lp~~--~l--~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~ 380 (606)
T 3vq2_A 308 KWQSLSIIRCQL-KQFPTL--DL--PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380 (606)
T ss_dssp CCSEEEEESCCC-SSCCCC--CC--SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCE
T ss_pred cCCEEEcccccC-cccccC--CC--CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccE
Confidence 999999999999 566643 55 89999999999665544 577899999999999999865 3777889999999
Q ss_pred EECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchh-hhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEe
Q 037514 439 LDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIK-ELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLG 517 (636)
Q Consensus 439 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 517 (636)
|++++|.+++.+ ..+..+++|++|++++|++.+..+ ..+. .+++|++|++++|.+++..|..+.++++|++|+
T Consensus 381 L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 381 LDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFL-----SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp EECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTT-----TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred eECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhh-----ccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 999999998866 578899999999999999987766 3333 347889999999999988999999999999999
Q ss_pred CcCCccCC-ccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCC
Q 037514 518 LSENSFLG-SLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNS 596 (636)
Q Consensus 518 Ls~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~ 596 (636)
+++|.+.+ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|. .|..+++|++|++++|++
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG-GTTTCTTCCEEECTTSCC
T ss_pred CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH-HccCCCcCCEEECCCCcC
Confidence 99999987 4788999999999999999999999999999999999999999999976565 489999999999999988
Q ss_pred Ccccccccc---cccCcceeeeecCccccccCCCcccCC
Q 037514 597 SLVFNIRHD---WIAPFNLYTIRGGTRLLVQGLPKYVTS 632 (636)
Q Consensus 597 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~p~~~~~ 632 (636)
......... .....++...++.+.+...++.+|+..
T Consensus 534 ~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~ 572 (606)
T 3vq2_A 534 ETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE 572 (606)
T ss_dssp CCEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTT
T ss_pred cccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHc
Confidence 754443111 122333444444445555556677754
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-50 Score=458.48 Aligned_cols=502 Identities=20% Similarity=0.177 Sum_probs=355.1
Q ss_pred cCccccCCCCCCEEeCCCCCCCCCC-CccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514 70 IPEFVYSLKKLKLLDLSESSFSGML-PPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS 148 (636)
Q Consensus 70 ~p~~~~~l~~L~~L~Ls~~~i~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 148 (636)
.|..|.++++|++|+|++|...+.+ |.+|+++++|++|+|++|.++++.+.. |.++++|++|++++|.++
T Consensus 40 ~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~---------~~~l~~L~~L~Ls~n~l~ 110 (844)
T 3j0a_A 40 TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA---------FQGLFHLFELRLYFCGLS 110 (844)
T ss_dssp CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS---------SCSCSSCCCEECTTCCCS
T ss_pred ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH---------ccCCcccCEeeCcCCCCC
Confidence 3456666666666666666443333 556666666666666666666554332 666666666666666666
Q ss_pred CCCChhhhhCCCCCCCEEEccCCcCCCCCC-cCccCCCCCCEEEccCCcCCcCCCccccCC--CCCCEEeCcCCcCCCCC
Q 037514 149 KVTNWLQVVNELPSLVELHLSNCQLNFPQS-LPFLNFTSLSILELSYDNFNSQIPQWLFNI--STLVTLNLRSSQLSGSI 225 (636)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l--~~L~~L~L~~n~l~~~~ 225 (636)
+.......++++++|++|+|++|.+.+..+ ..|+++++|++|++++|.+++..+..+..+ ++|++|++++|.+.+..
T Consensus 111 ~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~ 190 (844)
T 3j0a_A 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190 (844)
T ss_dssp SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC
T ss_pred cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc
Confidence 531111235666666666666666655433 356666666666666666666666666555 66666666666666544
Q ss_pred CCCCCCCCCC------CCEEEcccccCccccchhhhccccCCcccchhhc-----------cCcCcccccccccCC--CC
Q 037514 226 PKFPPGKMCN------LRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE-----------TQRMNGTISENIGQL--AE 286 (636)
Q Consensus 226 p~~~~~~l~~------L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~-----------~~~~~~~~~~~l~~l--~~ 286 (636)
|. .+..+++ |+.|++++|.+.+..+..+...- ....++.+. .+.+.+.....+..+ ++
T Consensus 191 ~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l--~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~ 267 (844)
T 3j0a_A 191 SV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI--SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267 (844)
T ss_dssp CC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS--CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred cc-chhhcCCccccCceeEEecCCCcCchhHHHHHHhhc--CcccccceecccccccccccccccCCCChhhhhccccCC
Confidence 32 2333333 67777777766665555444321 001222221 112222223333333 68
Q ss_pred CCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceec
Q 037514 287 LVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLT 366 (636)
Q Consensus 287 L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 366 (636)
|+.|++++|.+.+..+. .|..+++|+.|++++| .+....+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 268 L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYN--KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp CCEEECTTCCCCEECSC-CSSSCCCCCEEEEESC--CCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred ccEEECCCCcccccChh-hhhcCCCCCEEECCCC--cCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 99999999998875444 7889999999999998 56666777888889999999999999888888899999999999
Q ss_pred cccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCC
Q 037514 367 LSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRF 446 (636)
Q Consensus 367 L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 446 (636)
+++|.+.+..+..+..+ ++|++|++++|.+++. ..+++|+.|++++|+++ .+|.. ...++.|++++|++
T Consensus 345 L~~N~i~~~~~~~~~~l--~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFL--EKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRL 413 (844)
T ss_dssp CCSCCCCCCCSSCSCSC--CCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCC
T ss_pred CCCCCCCccChhhhcCC--CCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCcc
Confidence 99999988887777777 8999999999988643 33788999999999987 44443 46789999999999
Q ss_pred CCCcc-hhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCC-----CCCchhhcCCCCCCEEeCcC
Q 037514 447 LQLPS-TSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG-----GNLPDSLGNLLCLEYLGLSE 520 (636)
Q Consensus 447 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~~~~l~~l~~L~~L~Ls~ 520 (636)
++... ..+..+++|++|++++|++++..+... ...+++|+.|++++|.++ +..+..|.++++|+.|+|++
T Consensus 414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQT----PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp CSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS----SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred ccCchhhhhhcCCccceeeCCCCcccccccccc----cccCCccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence 88643 335689999999999999986543321 112478899999999997 34456688999999999999
Q ss_pred CccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCccc
Q 037514 521 NSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVF 600 (636)
Q Consensus 521 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~ 600 (636)
|.+++..|..|.++++|+.|+|++|++++..+..+. ++|+.|++++|++++..|.. +.+|+.+++++|+ ..|
T Consensus 490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~----~~~L~~l~l~~Np--~~C 561 (844)
T 3j0a_A 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV----FVSLSVLDITHNK--FIC 561 (844)
T ss_dssp HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC----CSSCCEEEEEEEC--CCC
T ss_pred CcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH----hCCcCEEEecCCC--ccc
Confidence 999998898999999999999999999998877776 89999999999999866652 4589999999994 455
Q ss_pred ccccccccC
Q 037514 601 NIRHDWIAP 609 (636)
Q Consensus 601 ~~~~~~~~~ 609 (636)
+|...|+..
T Consensus 562 ~c~~~~f~~ 570 (844)
T 3j0a_A 562 ECELSTFIN 570 (844)
T ss_dssp SSSCCSHHH
T ss_pred ccccHHHHH
Confidence 655555543
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-49 Score=448.06 Aligned_cols=527 Identities=20% Similarity=0.176 Sum_probs=418.8
Q ss_pred cccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCC-CcccccccccccccccCCCCCCCCEEecCCcc
Q 037514 68 SPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNL-KEYQITKELWVSDLIWLPDLSSSRYLHLEGMK 146 (636)
Q Consensus 68 ~~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 146 (636)
..+|. -.+++++|||++|.+++..|.+|+++++|++|++++|.. ..+++.. |.++++|++|+|++|.
T Consensus 17 ~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~---------f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 17 TQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA---------FRNLPNLRILDLGSSK 84 (844)
T ss_dssp SCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT---------TSSCTTCCEEECTTCC
T ss_pred CCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH---------hcCCCCCCEEECCCCc
Confidence 45666 346999999999999999999999999999999999954 3333322 8999999999999999
Q ss_pred CCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcC--ccCCCCCCEEEccCCcCCcCCC-ccccCCCCCCEEeCcCCcCCC
Q 037514 147 LSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLP--FLNFTSLSILELSYDNFNSQIP-QWLFNISTLVTLNLRSSQLSG 223 (636)
Q Consensus 147 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~~~~~~p-~~l~~l~~L~~L~L~~n~l~~ 223 (636)
+.... ++.|+++++|++|+|++|.+.+..+.. +.++++|++|++++|.+++..+ ..|+++++|++|++++|.+.+
T Consensus 85 l~~~~--p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 85 IYFLH--PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCEEC--TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcccC--HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 99873 468999999999999999998755544 8999999999999999988654 578999999999999999986
Q ss_pred CCCCCCCCCC--CCCCEEEcccccCccccchhhhcccc-CCcccchhhc--cCcCcccccccccCC---CCCCEEEccCC
Q 037514 224 SIPKFPPGKM--CNLRRLDLAINGFSGEKEQFIQTLSG-CNNSTLETLE--TQRMNGTISENIGQL---AELVALNLYRN 295 (636)
Q Consensus 224 ~~p~~~~~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~-~~~~~L~~L~--~~~~~~~~~~~l~~l---~~L~~L~l~~n 295 (636)
..+. .+..+ ++|+.|++++|.+.+..+..+..++. .....|+.|+ .+.+.+..+..+... .+++.+.+..+
T Consensus 163 ~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEH-ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSG-GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eCHH-HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 5443 35555 78999999999999877766665441 1122366666 566676666666533 56777777633
Q ss_pred c---------CccccChhhhcCC--CCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcce
Q 037514 296 S---------WKGIITENHFQNL--TKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFK 364 (636)
Q Consensus 296 ~---------~~~~i~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 364 (636)
. +.+ .....|..+ ++|+.|++++| ......+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 242 ~~~~~~~~~~l~~-~~~~~f~~l~~~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 318 (844)
T 3j0a_A 242 IMGAGFGFHNIKD-PDQNTFAGLARSSVRHLDLSHG--FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318 (844)
T ss_dssp CCBCSSSCSSSTT-GGGTTTTTTTTSCCCEEECTTC--CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred cccccccccccCC-CChhhhhccccCCccEEECCCC--cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence 2 222 122244444 68999999999 556667788888999999999999999888889999999999
Q ss_pred eccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCC
Q 037514 365 LTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGN 444 (636)
Q Consensus 365 L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 444 (636)
|++++|.+.+..+.++..+ ++|++|++++|.+.+..+..|..+++|++|++++|.+++ +..+++|+.|++++|
T Consensus 319 L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N 391 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGL--PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGN 391 (844)
T ss_dssp EEEESCCCSCCCSCSCSSC--TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESC
T ss_pred EECCCCCCCccCHHHhcCC--CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCC
Confidence 9999999998888888887 899999999999988888888999999999999998873 233788999999999
Q ss_pred CCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCch-hhcCCCCCCEEeCcCCcc
Q 037514 445 RFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPD-SLGNLLCLEYLGLSENSF 523 (636)
Q Consensus 445 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~~ 523 (636)
+++.++. ...+++.|++++|++++..... .+. .+++|++|++++|++++..+. .+..+++|+.|++++|.+
T Consensus 392 ~l~~l~~----~~~~l~~L~ls~N~l~~l~~~~--~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l 463 (844)
T 3j0a_A 392 KLVTLPK----INLTANLIHLSENRLENLDILY--FLL--RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463 (844)
T ss_dssp CCCCCCC----CCTTCCEEECCSCCCCSSTTHH--HHT--TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCC
T ss_pred Ccccccc----cccccceeecccCccccCchhh--hhh--cCCccceeeCCCCcccccccccccccCCccccccCCCCcc
Confidence 9987654 2567999999999998643221 122 358899999999999965443 456789999999999998
Q ss_pred C-----CccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCc
Q 037514 524 L-----GSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSL 598 (636)
Q Consensus 524 ~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~ 598 (636)
. +..+..|.++++|++|+|++|++++.+|..|..+++|+.|+|++|++++ +|...+. ++|+.|++++|.+..
T Consensus 464 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~--~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDLP--ANLEILDISRNQLLA 540 (844)
T ss_dssp SSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS-CCCCCCC--SCCCEEEEEEECCCC
T ss_pred ccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc-cChhhhh--ccccEEECCCCcCCC
Confidence 7 4445678899999999999999999999999999999999999999996 5655555 899999999998876
Q ss_pred ccccccccccCcceeeeecCccccccCCCccc
Q 037514 599 VFNIRHDWIAPFNLYTIRGGTRLLVQGLPKYV 630 (636)
Q Consensus 599 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~ 630 (636)
...-...-....++...+..|.|.+.++..|+
T Consensus 541 ~~~~~~~~L~~l~l~~Np~~C~c~~~~f~~~~ 572 (844)
T 3j0a_A 541 PNPDVFVSLSVLDITHNKFICECELSTFINWL 572 (844)
T ss_dssp CCSCCCSSCCEEEEEEECCCCSSSCCSHHHHH
T ss_pred CChhHhCCcCEEEecCCCcccccccHHHHHHH
Confidence 55533334456667777777777777776665
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-48 Score=424.26 Aligned_cols=496 Identities=19% Similarity=0.208 Sum_probs=402.1
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514 69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS 148 (636)
Q Consensus 69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 148 (636)
.+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.++++++.. |.++++|++|++++|.++
T Consensus 21 ~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~---------~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA---------YQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT---------TTTCTTCCEEECTTCCCC
T ss_pred ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccc---------ccCchhCCEEeCcCCcCC
Confidence 4565443 48999999999999888889999999999999999999876543 899999999999999999
Q ss_pred CCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCc-CCCccccCCCCCCEEeCcCCcCCCCCCC
Q 037514 149 KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS-QIPQWLFNISTLVTLNLRSSQLSGSIPK 227 (636)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 227 (636)
..+. ..|+++++|++|++++|.+....+..++++++|++|++++|.+++ .+|..+.++++|++|++++|++.+..+
T Consensus 90 ~~~~--~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~- 166 (570)
T 2z63_A 90 SLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC- 166 (570)
T ss_dssp EECT--TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG-
T ss_pred ccCH--hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH-
Confidence 8843 689999999999999999998877789999999999999999987 469999999999999999999985433
Q ss_pred CCCCCCCCC----CEEEcccccCccccchhhhccccCCcccchhhc--cCcC-cccccccccCCCCCCEEEccCCcCc--
Q 037514 228 FPPGKMCNL----RRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRM-NGTISENIGQLAELVALNLYRNSWK-- 298 (636)
Q Consensus 228 ~~~~~l~~L----~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~-~~~~~~~l~~l~~L~~L~l~~n~~~-- 298 (636)
..++.+++| +.+++++|.+.+..+..+... +++.++ .+.. ...++..+..++.++...+....+.
T Consensus 167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~------~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC------EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred HHccchhccchhhhhcccCCCCceecCHHHhccC------cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 246667777 899999999998877665532 455555 2211 1234555666777766655432221
Q ss_pred ---cccChhhhcCCCC--CCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCC
Q 037514 299 ---GIITENHFQNLTK--LNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAIS 373 (636)
Q Consensus 299 ---~~i~~~~~~~l~~--L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~ 373 (636)
..++...+..+++ ++.++++++. ......+..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+.
T Consensus 241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~ 317 (570)
T 2z63_A 241 GNLEKFDKSALEGLCNLTIEEFRLAYLD-YYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG 317 (570)
T ss_dssp SSCEECCTTTTGGGGGSEEEEEEEEETT-EEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS
T ss_pred hhhhhcchhhhccccccchhhhhhhcch-hhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc
Confidence 1133334444443 4555665552 234455677788899999999999987 577788888 9999999999998
Q ss_pred CcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCccc--CCCCCCCCCCCEEECCCCCCCCCcc
Q 037514 374 DTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGEL--STSLPDCSRLTALDIGGNRFLQLPS 451 (636)
Q Consensus 374 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~ 451 (636)
.... ..+ ++|++|++++|.+.+..+. ..+++|++|++++|++.+.. +..+..+++|++|++++|.+.+.++
T Consensus 318 ~l~~---~~l--~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 390 (570)
T 2z63_A 318 QFPT---LKL--KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390 (570)
T ss_dssp SCCB---CBC--SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE
T ss_pred ccCc---ccc--cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc
Confidence 4433 233 8999999999998776654 77899999999999998553 6678889999999999999998877
Q ss_pred hhhcCCCCCCeEeCcCCcCCCchhh-hHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccC-CccCh
Q 037514 452 TSMGNLCNLHSLDISYNHITGEIKE-LTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFL-GSLPT 529 (636)
Q Consensus 452 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~-~~~p~ 529 (636)
. +..+++|++|++++|++.+..+. .+. .+++|++|++++|.+.+..|..+.++++|++|++++|.+. +.+|.
T Consensus 391 ~-~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~ 464 (570)
T 2z63_A 391 N-FLGLEQLEHLDFQHSNLKQMSEFSVFL-----SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464 (570)
T ss_dssp E-EETCTTCCEEECTTSEEESCTTSCTTT-----TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred c-ccccCCCCEEEccCCccccccchhhhh-----cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh
Confidence 6 89999999999999999876552 222 3478899999999999888999999999999999999997 57899
Q ss_pred hhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccc
Q 037514 530 SIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFN 601 (636)
Q Consensus 530 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~ 601 (636)
.+..+++|++|++++|++++..|..+..+++|++|++++|++++ +|...|..+++|++|++++|++...|+
T Consensus 465 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC-CCHHHhhcccCCcEEEecCCcccCCCc
Confidence 99999999999999999999999999999999999999999996 566678999999999999996655443
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.8e-46 Score=402.85 Aligned_cols=470 Identities=20% Similarity=0.199 Sum_probs=314.7
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514 69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS 148 (636)
Q Consensus 69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 148 (636)
.+|+.+. ++|++|++++|++++..|.+|+++++|++|++++|+++++++.. +.++++|++|++++|.++
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---------~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA---------FYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT---------TTTCTTCCEEECTTSCCC
T ss_pred cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh---------ccccccCCEEECCCCccC
Confidence 4666554 69999999999999888999999999999999999999877543 899999999999999999
Q ss_pred CCCChhhhhCCCCCCCEEEccCCcCCCC-CCcCccCCCCCCEEEccCCcCCcCC-CccccCCCCCCEEeCcCCcCCCCCC
Q 037514 149 KVTNWLQVVNELPSLVELHLSNCQLNFP-QSLPFLNFTSLSILELSYDNFNSQI-PQWLFNISTLVTLNLRSSQLSGSIP 226 (636)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p 226 (636)
+.+ +..|+++++|++|++++|.+.+. .+..+.++++|++|++++|.+.+.+ +..+.++++|++|++++|.+.+..|
T Consensus 88 ~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 88 SLS--SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp SCC--HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred ccC--HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 884 36799999999999999999863 5678999999999999999844434 4689999999999999999997666
Q ss_pred CCCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCcccc--Chh
Q 037514 227 KFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGII--TEN 304 (636)
Q Consensus 227 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i--~~~ 304 (636)
. .++.+++|++|++++|.+.......+..+ ++|++|++++|++.+.. +..
T Consensus 166 ~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~l---------------------------~~L~~L~L~~n~l~~~~~~~~~ 217 (549)
T 2z81_A 166 Q-SLKSIRDIHHLTLHLSESAFLLEIFADIL---------------------------SSVRYLELRDTNLARFQFSPLP 217 (549)
T ss_dssp T-TTTTCSEEEEEEEECSBSTTHHHHHHHST---------------------------TTBSEEEEESCBCTTCCCCCCS
T ss_pred h-hhhccccCceEecccCcccccchhhHhhc---------------------------ccccEEEccCCccccccccccc
Confidence 4 58889999999999998764333222333 34555555555544421 111
Q ss_pred hhcCCCCCCEEEccCCCCccEEe----cCCCCCCCCCccEEEccCCCCCcC------CChhhcCCCCcceeccccccCCC
Q 037514 305 HFQNLTKLNSLYLSSSNKSLVFT----MRSDWIPPFSLRQMAINDCQLGSA------FPSWLKTQASVFKLTLSNAAISD 374 (636)
Q Consensus 305 ~~~~l~~L~~L~L~~n~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~------~~~~l~~~~~L~~L~L~~n~~~~ 374 (636)
....+++|+.|++++| ..... ....+....+++.+++++|.+.+. ....+..+.+++.|++.++.+..
T Consensus 218 ~~~~~~~L~~L~l~~n--~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 295 (549)
T 2z81_A 218 VDEVSSPMKKLAFRGS--VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295 (549)
T ss_dssp SCCCCCCCCEEEEESC--EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSC
T ss_pred hhhhhhcccceecccc--ccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccch
Confidence 1233445555555544 22111 111122334555555555544331 11223445566666666665543
Q ss_pred c-----chhhHHhhcCCCccEEECccCcCCccCCccc-CCCCCCcEEEccCCcCCcccC---CCCCCCCCCCEEECCCCC
Q 037514 375 T-----IPDWFWGVISQKLSVIDLSNNKFFGGILSSL-CSLPSLYWLRLGGNNLSGELS---TSLPDCSRLTALDIGGNR 445 (636)
Q Consensus 375 ~-----~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~ 445 (636)
. .+..+... ++|++|++++|++.. +|..+ ..+++|++|++++|++.+..| ..+..+++|++|++++|+
T Consensus 296 ~~~~~~l~~~~~~~--~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 372 (549)
T 2z81_A 296 FYLFYDLSTVYSLL--EKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372 (549)
T ss_dssp GGGSCCCCHHHHHS--TTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC
T ss_pred hhhcccchhhhhhc--ccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc
Confidence 2 12222222 567777777777653 34333 456777777777777765442 335667777777777777
Q ss_pred CCCCcc--hhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCcc
Q 037514 446 FLQLPS--TSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSF 523 (636)
Q Consensus 446 l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~ 523 (636)
+++.++ ..+..+++|++|++++|+++ .+|..+. .+++|++|++++|+++ .+|..+. ++|+.|++++|++
T Consensus 373 l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-----~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l 443 (549)
T 2z81_A 373 LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ-----WPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNL 443 (549)
T ss_dssp CCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC-----CCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCC
T ss_pred ccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc-----ccccccEEECCCCCcc-cccchhc--CCceEEECCCCCh
Confidence 776543 34667777777777777776 3333222 2366677777777776 3443332 5777788888777
Q ss_pred CCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCccc
Q 037514 524 LGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVF 600 (636)
Q Consensus 524 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~ 600 (636)
++.+ ..+++|++|++++|+++. +|. ...+++|++|++++|++++ ++...|..+++|+.|++++|+....|
T Consensus 444 ~~~~----~~l~~L~~L~Ls~N~l~~-ip~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 444 DSFS----LFLPRLQELYISRNKLKT-LPD-ASLFPVLLVMKISRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp SCCC----CCCTTCCEEECCSSCCSS-CCC-GGGCTTCCEEECCSSCCCC-CCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred hhhc----ccCChhcEEECCCCccCc-CCC-cccCccCCEEecCCCccCC-cCHHHHhcCcccCEEEecCCCccCCC
Confidence 6532 456778888888887774 343 3567778888888887775 44445777788888888888544333
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.8e-47 Score=414.31 Aligned_cols=473 Identities=23% Similarity=0.252 Sum_probs=375.8
Q ss_pred cCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCC
Q 037514 70 IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSK 149 (636)
Q Consensus 70 ~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 149 (636)
.+..|.++++|++|++++|++++..+..|+++++|++|++++|.++++++.. |.++++|++|++++|.++.
T Consensus 44 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~l~~L~~L~L~~n~l~~ 114 (570)
T 2z63_A 44 GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA---------FSGLSSLQKLVAVETNLAS 114 (570)
T ss_dssp CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT---------TTTCTTCCEEECTTSCCCC
T ss_pred ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh---------hcCcccccccccccccccc
Confidence 3568999999999999999999888889999999999999999999876543 8999999999999999999
Q ss_pred CCChhhhhCCCCCCCEEEccCCcCCC-CCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCC----CEEeCcCCcCCCC
Q 037514 150 VTNWLQVVNELPSLVELHLSNCQLNF-PQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTL----VTLNLRSSQLSGS 224 (636)
Q Consensus 150 ~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L----~~L~L~~n~l~~~ 224 (636)
++. ..++++++|++|++++|.+.+ ..|..+.++++|++|++++|.+++..|..+..+++| ++|++++|.+.+.
T Consensus 115 l~~--~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~ 192 (570)
T 2z63_A 115 LEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (570)
T ss_dssp STT--CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred CCC--ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceec
Confidence 854 358999999999999999987 468899999999999999999999888889988888 8999999999854
Q ss_pred CCCCCCCCCCCCCEEEcccccCcc-ccchhhhccccCCcccchhhc--c------CcCcccccccccCCC--CCCEEEcc
Q 037514 225 IPKFPPGKMCNLRRLDLAINGFSG-EKEQFIQTLSGCNNSTLETLE--T------QRMNGTISENIGQLA--ELVALNLY 293 (636)
Q Consensus 225 ~p~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~~~~~~L~~L~--~------~~~~~~~~~~l~~l~--~L~~L~l~ 293 (636)
.|. .+... +|+.|++++|.... ..+..+..++ .++... . ..+.......+..+. .++.++++
T Consensus 193 ~~~-~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~-----~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 193 QPG-AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLA-----GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp CTT-TTTTC-EEEEEEEESCCSCTTHHHHHHHTTT-----TCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CHH-HhccC-cceeEecccccccccchhhhhcCcc-----ccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 443 35544 79999999885432 2333344433 222111 0 011111111222222 25566777
Q ss_pred CC-cCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccC
Q 037514 294 RN-SWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAI 372 (636)
Q Consensus 294 ~n-~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~ 372 (636)
++ .+.+.++. .+..+++|+.|++++|. .. .++..+... +|++|++++|.+. .+|. ..+++|++|++++|.+
T Consensus 266 ~~~~~~~~~~~-~~~~l~~L~~L~l~~~~--l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 266 YLDYYLDDIID-LFNCLTNVSSFSLVSVT--IE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKG 337 (570)
T ss_dssp ETTEEESCSTT-TTGGGTTCSEEEEESCE--EC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBS
T ss_pred cchhhhhhchh-hhcCcCcccEEEecCcc--ch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcc
Confidence 66 55555554 78888888888888873 22 455556666 8888999888887 4444 4678899999999988
Q ss_pred CCcchhhHHhhcCCCccEEECccCcCCccC--CcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCc
Q 037514 373 SDTIPDWFWGVISQKLSVIDLSNNKFFGGI--LSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLP 450 (636)
Q Consensus 373 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 450 (636)
.+..+. ..+ ++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..
T Consensus 338 ~~~~~~--~~~--~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 338 GNAFSE--VDL--PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp CCBCCC--CBC--TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT
T ss_pred cccccc--ccC--CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc
Confidence 776654 333 88999999999887654 56677889999999999988755444 888999999999999988765
Q ss_pred c-hhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCC-CCCchhhcCCCCCCEEeCcCCccCCccC
Q 037514 451 S-TSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG-GNLPDSLGNLLCLEYLGLSENSFLGSLP 528 (636)
Q Consensus 451 ~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~p 528 (636)
+ ..+..+++|++|++++|++.+..+..+.. +++|++|++++|.++ +.+|..+..+++|+.|++++|++.+..|
T Consensus 413 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-----LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp TSCTTTTCTTCCEEECTTSCCEECCTTTTTT-----CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred chhhhhcCCCCCEEeCcCCcccccchhhhhc-----CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence 5 46788999999999999988777665543 477899999999987 5688889999999999999999998889
Q ss_pred hhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChh
Q 037514 529 TSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEK 578 (636)
Q Consensus 529 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 578 (636)
..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+.+|..
T Consensus 488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 99999999999999999999998889999999999999999999887753
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-47 Score=420.07 Aligned_cols=488 Identities=18% Similarity=0.188 Sum_probs=314.7
Q ss_pred HHhHHHHHhcc-CCCCCC--------CCCCCCCcc--cCcc---c---c-CCCCCCEEeCCCCCCCCCCCccccCCCCCC
Q 037514 44 EREREALLKFK-GLIDPS--------ARLSSWKSP--IPEF---V---Y-SLKKLKLLDLSESSFSGMLPPNIGNLSNLQ 105 (636)
Q Consensus 44 ~~~~~~l~~~~-~l~~~~--------~~~~~w~~~--~p~~---~---~-~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~ 105 (636)
.+|+.|+.+++ ++.++. ....+|+.. ...| - + .-.+|+.|+|++++++|.+|.+|+++++|+
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~ 108 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELE 108 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCC
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccce
Confidence 46888999988 653321 223467522 1122 1 1 115899999999999999999999999999
Q ss_pred EEeCcCCCCCccccc---ccccccccccCCCCCCCCEEecCCccCCCCCChhhhhC-------------------CCCCC
Q 037514 106 YLDLSYQNLKEYQIT---KELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVN-------------------ELPSL 163 (636)
Q Consensus 106 ~L~Ls~n~l~~~~~~---~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-------------------~l~~L 163 (636)
+|+|++|.+...... ..+.. .+. -..+..|+ ++++++.+...+ +..+. ....+
T Consensus 109 ~L~Ls~N~~~~~~~~~~~~~~~~-~~~-~~~~~~l~-l~l~~~~l~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 183 (636)
T 4eco_A 109 VLALGSHGEKVNERLFGPKGISA-NMS-DEQKQKMR-MHYQKTFVDYDP--REDFSDLIKDCINSDPQQKSIKKSSRITL 183 (636)
T ss_dssp EEESCCGGGGGTCCSBSTTSBCT-TCC-HHHHHHHH-THHHHHHTCCCG--GGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred EEECcCCccccCCcccccccccc-Cch-HHHHHHHH-hhHHHhhhccCc--hhhHHHHHHHHhhcCccccccccccccch
Confidence 999999976321100 00000 000 00123344 555555544431 11221 11122
Q ss_pred CEEEcc--CCcCCCCCCcCccCCCCCCEEEccCCcCCcC-----------------CCcccc--CCCCCCEEeCcCCcCC
Q 037514 164 VELHLS--NCQLNFPQSLPFLNFTSLSILELSYDNFNSQ-----------------IPQWLF--NISTLVTLNLRSSQLS 222 (636)
Q Consensus 164 ~~L~L~--~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~ 222 (636)
+.+.+. +|++++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.
T Consensus 184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~ 262 (636)
T 4eco_A 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262 (636)
T ss_dssp CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence 222232 466777 777888888888888888888885 788888 8888888888888888
Q ss_pred CCCCCCCCCCCCCCCEEEccccc-Ccc-ccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccc
Q 037514 223 GSIPKFPPGKMCNLRRLDLAING-FSG-EKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGI 300 (636)
Q Consensus 223 ~~~p~~~~~~l~~L~~L~L~~n~-~~~-~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 300 (636)
+.+|. .++++++|++|++++|. +++ .+|..+..+. .+..+++|++|++++|+++ .
T Consensus 263 ~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~---------------------~~~~l~~L~~L~L~~n~l~-~ 319 (636)
T 4eco_A 263 TKLPT-FLKALPEMQLINVACNRGISGEQLKDDWQALA---------------------DAPVGEKIQIIYIGYNNLK-T 319 (636)
T ss_dssp SSCCT-TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHH---------------------HSGGGGTCCEEECCSSCCS-S
T ss_pred ccChH-HHhcCCCCCEEECcCCCCCccccchHHHHhhh---------------------ccccCCCCCEEECCCCcCC-c
Confidence 88774 57888888888888887 777 6776665542 1223468889999999888 4
Q ss_pred cCh-hhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhh
Q 037514 301 ITE-NHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDW 379 (636)
Q Consensus 301 i~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~ 379 (636)
+|. +.++++++|+.|++++| .+.+.++ .+..+++|++|++++|.+. .+|..+..+++
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N--~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~------------------ 377 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYN--QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTE------------------ 377 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSC--CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECT------------------
T ss_pred cCchhhhccCCCCCEEeCcCC--cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcc------------------
Confidence 664 36888888888888887 4444444 4445555555555555544 34444444443
Q ss_pred HHhhcCCCccEEECccCcCCccCCcccCCCC--CCcEEEccCCcCCcccCCCCC-------CCCCCCEEECCCCCCCCCc
Q 037514 380 FWGVISQKLSVIDLSNNKFFGGILSSLCSLP--SLYWLRLGGNNLSGELSTSLP-------DCSRLTALDIGGNRFLQLP 450 (636)
Q Consensus 380 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~ 450 (636)
+|++|++++|.++ .+|..+..++ +|++|++++|.+.+..|..+. .+++|++|++++|.++.++
T Consensus 378 -------~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp 449 (636)
T 4eco_A 378 -------QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449 (636)
T ss_dssp -------TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC
T ss_pred -------cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCC
Confidence 0555555555554 3444444433 666666666666666666555 5667777777777777666
Q ss_pred chhhcCCCCCCeEeCcCCcCCCchhhh-HHhhh--cCCCCcccEEEcccCcCCCCCchhhc--CCCCCCEEeCcCCccCC
Q 037514 451 STSMGNLCNLHSLDISYNHITGEIKEL-TNAFS--ACNVSTLETLDLASNKLGGNLPDSLG--NLLCLEYLGLSENSFLG 525 (636)
Q Consensus 451 ~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~~~~ 525 (636)
+..+..+++|++|++++|+++ .+|.. +.... .-.+++|++|++++|+++ .+|..+. .+++|+.|+|++|++.+
T Consensus 450 ~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 450 KELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp THHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred HHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC
Confidence 655666777777777777776 33322 11110 001126678888888777 5666665 77888888888888776
Q ss_pred ccChhhhCCCCCCeEeC------cCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCC
Q 037514 526 SLPTSIGNLSHLRALYL------SFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSS 597 (636)
Q Consensus 526 ~~p~~l~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~ 597 (636)
+|..+.++++|++|++ ++|++.+.+|..+..+++|++|++++|++ +.+|...+ ++|++|++++|++.
T Consensus 528 -ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~---~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT---PNISVLDIKDNPNI 600 (636)
T ss_dssp -CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC---TTCCEEECCSCTTC
T ss_pred -cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh---CcCCEEECcCCCCc
Confidence 7777777888888887 45667777788888888888888888888 46777633 67888888888654
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.5e-47 Score=409.30 Aligned_cols=454 Identities=19% Similarity=0.225 Sum_probs=283.3
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCC
Q 037514 81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNEL 160 (636)
Q Consensus 81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 160 (636)
++||+++|+++ .+|..+. ++|++|++++|.++++++.. +.++++|++|++++|++++. .+..|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~---------~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l 68 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSD---------ILSLSKLRILIISHNRIQYL--DISVFKFN 68 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHH---------HTTCTTCCEEECCSSCCCEE--EGGGGTTC
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhh---------ccccccccEEecCCCccCCc--ChHHhhcc
Confidence 56777777777 4666555 77777888777777665432 67777777777777777766 23577777
Q ss_pred CCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCc-CCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCC--C
Q 037514 161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS-QIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNL--R 237 (636)
Q Consensus 161 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L--~ 237 (636)
++|++|++++|+++. +|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| +
T Consensus 69 ~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~ 141 (520)
T 2z7x_B 69 QELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNIS 141 (520)
T ss_dssp TTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEE
T ss_pred cCCCEEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceee
Confidence 888888888887774 3333 67788888888887776 456777788888888888877764 245666666 8
Q ss_pred EEEcccccC--ccccchhhhccccCCcccchhhccCcCccccc-ccccCCCCCCEEEccCCc-------CccccChhhhc
Q 037514 238 RLDLAINGF--SGEKEQFIQTLSGCNNSTLETLETQRMNGTIS-ENIGQLAELVALNLYRNS-------WKGIITENHFQ 307 (636)
Q Consensus 238 ~L~L~~n~~--~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~-~~l~~l~~L~~L~l~~n~-------~~~~i~~~~~~ 307 (636)
+|++++|.+ .+..|..+..+.. ....+ .+..+.+.+.++ ..+..+++|+.+++++|. +.+.++ .+.
T Consensus 142 ~L~l~~n~l~~~~~~~~~l~~l~~-~~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~ 217 (520)
T 2z7x_B 142 KVLLVLGETYGEKEDPEGLQDFNT-ESLHI-VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQ 217 (520)
T ss_dssp EEEEEECTTTTSSCCTTTTTTCCE-EEEEE-ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGG
T ss_pred EEEeeccccccccccccccccccc-ceEEE-EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhc
Confidence 888887777 5555554444330 00000 001222222222 233444555555555554 333222 344
Q ss_pred CCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhh---cCCCCcceeccccccCCCcchhhH----
Q 037514 308 NLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWL---KTQASVFKLTLSNAAISDTIPDWF---- 380 (636)
Q Consensus 308 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~L~~n~~~~~~~~~~---- 380 (636)
.+++|+.|++++| .+.+..+..+ ...++|++|++++|.+.+.+|..+
T Consensus 218 ~l~~L~~L~l~~~--------------------------~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 271 (520)
T 2z7x_B 218 TNPKLSNLTLNNI--------------------------ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271 (520)
T ss_dssp GCTTCCEEEEEEE--------------------------EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCC
T ss_pred cccchhhcccccc--------------------------ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcc
Confidence 5555555555444 4332211111 012455666666666555555544
Q ss_pred -HhhcCCCccEEECccCcCCccCC-cccCCC---CCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhc
Q 037514 381 -WGVISQKLSVIDLSNNKFFGGIL-SSLCSL---PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMG 455 (636)
Q Consensus 381 -~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 455 (636)
..+ +.|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|.+++..+..+.
T Consensus 272 ~~~l--~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 345 (520)
T 2z7x_B 272 GTSL--KALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG 345 (520)
T ss_dssp SCCC--CEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred cccC--ceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc
Confidence 333 5566666666655 222 222222 45666666666654221 124566777777777777776666677
Q ss_pred CCCCCCeEeCcCCcCCC--chhhhHHhhhcCCCCcccEEEcccCcCCCCCch-hhcCCCCCCEEeCcCCccCCccChhhh
Q 037514 456 NLCNLHSLDISYNHITG--EIKELTNAFSACNVSTLETLDLASNKLGGNLPD-SLGNLLCLEYLGLSENSFLGSLPTSIG 532 (636)
Q Consensus 456 ~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~p~~l~ 532 (636)
.+++|++|++++|++++ .+|..+. .+++|++|++++|++++.+|. .+..+++|+.|++++|++++..|..+.
T Consensus 346 ~l~~L~~L~L~~N~l~~l~~~~~~~~-----~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 420 (520)
T 2z7x_B 346 HLTELETLILQMNQLKELSKIAEMTT-----QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420 (520)
T ss_dssp CCSSCCEEECCSSCCCBHHHHHHHHT-----TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC
T ss_pred cCCCCCEEEccCCccCccccchHHHh-----hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc
Confidence 77777777777777764 2223232 236667888888877764554 367788888888888888777776554
Q ss_pred CCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCccc
Q 037514 533 NLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVF 600 (636)
Q Consensus 533 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~ 600 (636)
++|++|++++|+++. +|..+..+++|++|++++|+++ .+|...|..+++|++|++++|++...|
T Consensus 421 --~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 421 --PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp --TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred --ccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccC
Confidence 688888888888884 5666668888888888888888 577777888889999999998554433
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.3e-46 Score=404.61 Aligned_cols=486 Identities=17% Similarity=0.163 Sum_probs=377.2
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCC
Q 037514 81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNEL 160 (636)
Q Consensus 81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 160 (636)
.+.|.+++.++ .+|..+. ++|++|++++|.++++.+.. +.++++|++|++++|.++..+. ..|+++
T Consensus 8 ~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l 73 (549)
T 2z81_A 8 GVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGD---------LRACANLQVLILKSSRINTIEG--DAFYSL 73 (549)
T ss_dssp SEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSST---------TSSCTTCCEEECTTSCCCEECT--TTTTTC
T ss_pred ceEECCCCccc-cccccCC--CCccEEECcCCccCccChhh---------hhcCCcccEEECCCCCcCccCh--hhcccc
Confidence 44688888887 5676554 78999999999998876532 8899999999999999988743 678899
Q ss_pred CCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCc-CCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEE
Q 037514 161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS-QIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRL 239 (636)
Q Consensus 161 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L 239 (636)
++|++|++++|.+.+..+..|.++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+|...+.++++|++|
T Consensus 74 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 153 (549)
T 2z81_A 74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153 (549)
T ss_dssp TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence 999999999999998888788999999999999999986 3567888999999999999986557665568889999999
Q ss_pred EcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccC
Q 037514 240 DLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSS 319 (636)
Q Consensus 240 ~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~ 319 (636)
++++|.+.+..| ..++.+++|++|++++|.+.. ++...+..+++|++|++++
T Consensus 154 ~L~~n~l~~~~~---------------------------~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 154 EIKALSLRNYQS---------------------------QSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRD 205 (549)
T ss_dssp EEEETTCCEECT---------------------------TTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEES
T ss_pred eccCCcccccCh---------------------------hhhhccccCceEecccCcccc-cchhhHhhcccccEEEccC
Confidence 999888876544 445556689999999998865 5665667899999999999
Q ss_pred CCCccEEecC-CCCCCCCCccEEEccCCCCCcCCC----hhhcCCCCcceeccccccCCCcch------hhHHhhcCCCc
Q 037514 320 SNKSLVFTMR-SDWIPPFSLRQMAINDCQLGSAFP----SWLKTQASVFKLTLSNAAISDTIP------DWFWGVISQKL 388 (636)
Q Consensus 320 n~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~L~~n~~~~~~~------~~~~~~~~~~L 388 (636)
|.+......+ .......+|+.|++++|.+.+..+ ..+..+++|+.+++++|.+.+... ..+... +++
T Consensus 206 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l--~~L 283 (549)
T 2z81_A 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL--GKV 283 (549)
T ss_dssp CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC--TTC
T ss_pred CccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhh--ccc
Confidence 9543221111 122356789999999998876444 344678899999999998876421 112233 789
Q ss_pred cEEECccCcCCccC-----CcccCCCCCCcEEEccCCcCCcccCCCC-CCCCCCCEEECCCCCCCCCcc---hhhcCCCC
Q 037514 389 SVIDLSNNKFFGGI-----LSSLCSLPSLYWLRLGGNNLSGELSTSL-PDCSRLTALDIGGNRFLQLPS---TSMGNLCN 459 (636)
Q Consensus 389 ~~L~ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~ 459 (636)
+.|++.++.+.... +..+...++|++|++++|.+. .+|..+ ..+++|++|++++|.+++..+ ..++.+++
T Consensus 284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred ccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence 99999998875431 112233578999999999987 566555 579999999999999998653 23678999
Q ss_pred CCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCe
Q 037514 460 LHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRA 539 (636)
Q Consensus 460 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~ 539 (636)
|++|++++|++++..+. ...+.. +++|++|++++|+++ .+|..+..+++|++|++++|++. .+|..+ .++|++
T Consensus 363 L~~L~Ls~N~l~~~~~~-~~~~~~--l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~ 435 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQKT-GEILLT--LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEV 435 (549)
T ss_dssp CCEEECTTSCCCCHHHH-HHHGGG--CTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSE
T ss_pred CcEEEccCCcccccccc-hhhhhc--CCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceE
Confidence 99999999999865431 111222 478899999999999 68888999999999999999987 455443 268999
Q ss_pred EeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccccccccccCcceeeeecCc
Q 037514 540 LYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPFNLYTIRGGT 619 (636)
Q Consensus 540 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~~~~~~ 619 (636)
|++++|++++.+ ..+++|++|++++|+++ .+|.. ..+++|++|++++|++.....- .+.....++.+.+.+
T Consensus 436 L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~--~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 436 LDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDA--SLFPVLLVMKISRNQLKSVPDG--IFDRLTSLQKIWLHT 506 (549)
T ss_dssp EECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCG--GGCTTCCEEECCSSCCCCCCTT--GGGGCTTCCEEECCS
T ss_pred EECCCCChhhhc----ccCChhcEEECCCCccC-cCCCc--ccCccCCEEecCCCccCCcCHH--HHhcCcccCEEEecC
Confidence 999999998853 57899999999999998 68873 5689999999999987654331 123345677788777
Q ss_pred cccccCCC
Q 037514 620 RLLVQGLP 627 (636)
Q Consensus 620 ~~~~~~~p 627 (636)
+...+..|
T Consensus 507 N~~~~~~~ 514 (549)
T 2z81_A 507 NPWDCSCP 514 (549)
T ss_dssp SCBCCCHH
T ss_pred CCccCCCc
Confidence 76655555
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.6e-46 Score=416.56 Aligned_cols=489 Identities=20% Similarity=0.218 Sum_probs=267.6
Q ss_pred ccCHHhHHHHHhcc-CCCCCCCCCCCCCccc------C---cc------------c---cC-CCCCCEEeCCCCCCCCCC
Q 037514 41 RCTEREREALLKFK-GLIDPSARLSSWKSPI------P---EF------------V---YS-LKKLKLLDLSESSFSGML 94 (636)
Q Consensus 41 ~c~~~~~~~l~~~~-~l~~~~~~~~~w~~~~------p---~~------------~---~~-l~~L~~L~Ls~~~i~~~~ 94 (636)
.+..+|+.||++|| ++.++ +|+..- | .| - +. -.+|+.|+|+++++.|.+
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred ccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence 34567999999999 77544 453211 2 12 1 11 258999999999999999
Q ss_pred CccccCCCCCCEEeC-cCCCCCcccccccccccccccCCCCCCCC--EEe---------c-CCccCCCC--------CCh
Q 037514 95 PPNIGNLSNLQYLDL-SYQNLKEYQITKELWVSDLIWLPDLSSSR--YLH---------L-EGMKLSKV--------TNW 153 (636)
Q Consensus 95 ~~~l~~l~~L~~L~L-s~n~l~~~~~~~~~~~~~~~~~~~l~~L~--~L~---------L-~~n~l~~~--------~~~ 153 (636)
|.+|++|++|++|+| ++|.+.+..+...... -..+...+ .+. . ....+... +..
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~-----~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~ 414 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEEL-----TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCC-----CSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTS
T ss_pred chHHhccccceEeeeccccccccccccccccc-----ccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccc
Confidence 999999999999999 8887765421100000 00000000 000 0 00000000 000
Q ss_pred -hhhhCCCCCCCEEEccC--CcCCCCCCcCccCCCCCCEEEccCCcCCc-----------------CCCcccc--CCCCC
Q 037514 154 -LQVVNELPSLVELHLSN--CQLNFPQSLPFLNFTSLSILELSYDNFNS-----------------QIPQWLF--NISTL 211 (636)
Q Consensus 154 -~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-----------------~~p~~l~--~l~~L 211 (636)
+........++.+.+.. |.+++ +|..+.++++|++|+|++|.+++ .+|..++ ++++|
T Consensus 415 ~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L 493 (876)
T 4ecn_A 415 KPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL 493 (876)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred cccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCC
Confidence 00001122333333333 55666 56677777777777777777776 3777766 88888
Q ss_pred CEEeCcCCcCCCCCCCCCCCCCCCCCEEEccccc-Ccc-ccchhhhccccCCcccchhhccCcCcccccccccCCCCCCE
Q 037514 212 VTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAING-FSG-EKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVA 289 (636)
Q Consensus 212 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~-~~~-~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~ 289 (636)
++|++++|.+.+.+|. .++++++|++|++++|+ +++ .+|..+..++ ..+..+++|++
T Consensus 494 ~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~--------------------~~~~~l~~L~~ 552 (876)
T 4ecn_A 494 TDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLA--------------------DDEDTGPKIQI 552 (876)
T ss_dssp CEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH--------------------HCTTTTTTCCE
T ss_pred CEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhh--------------------hcccccCCccE
Confidence 8888888887777763 47788888888888887 776 6666655443 13345668888
Q ss_pred EEccCCcCccccCh-hhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCC-cceecc
Q 037514 290 LNLYRNSWKGIITE-NHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQAS-VFKLTL 367 (636)
Q Consensus 290 L~l~~n~~~~~i~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~L 367 (636)
|++++|++. .+|. ..+.++++|+.|++++|.+ . .++ .+..+++|++|++++|.+. .+|..+..+++ |+.|++
T Consensus 553 L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l--~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 553 FYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV--R-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp EECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC--C-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEEC
T ss_pred EEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc--c-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEEC
Confidence 888888888 4665 4688888888888888843 2 333 5566666666666666666 55555555555 666666
Q ss_pred ccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCC--CCCCCCEEECCCCC
Q 037514 368 SNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLP--DCSRLTALDIGGNR 445 (636)
Q Consensus 368 ~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~ 445 (636)
++|.+. .+|..+.....++|+.|++++|++.+.+|.... .+. .+++|++|++++|.
T Consensus 627 s~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~---------------------~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 627 SHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC---------------------SMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp CSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS---------------------CTTTCCCCCEEEEECCSSC
T ss_pred cCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchh---------------------hhccccCCCcCEEEccCCc
Confidence 666555 334433332112255555555555443332110 011 12244444444444
Q ss_pred CCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhc---CCCCcccEEEcccCcCCCCCchhhc--CCCCCCEEeCcC
Q 037514 446 FLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSA---CNVSTLETLDLASNKLGGNLPDSLG--NLLCLEYLGLSE 520 (636)
Q Consensus 446 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~---~~~~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~ 520 (636)
++.+++..+..+++|+.|++++|+++ .+|........ .++++|+.|+|++|+++ .+|..+. .+++|+.|+|++
T Consensus 685 L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 685 IQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSY 762 (876)
T ss_dssp CCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCS
T ss_pred CCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCC
Confidence 44444333334444444444444444 22221110000 00124455555555555 4444443 455555555555
Q ss_pred CccCCccChhhhCCCCCCeEeCcC------ccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514 521 NSFLGSLPTSIGNLSHLRALYLSF------NVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSS 594 (636)
Q Consensus 521 n~~~~~~p~~l~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n 594 (636)
|++.+ +|..+..+++|+.|++++ |++.+.+|..+..+++|+.|++++|++ +.+|...+ ++|+.|++++|
T Consensus 763 N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~---~~L~~LdLs~N 837 (876)
T 4ecn_A 763 NCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT---PQLYILDIADN 837 (876)
T ss_dssp SCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC---SSSCEEECCSC
T ss_pred CCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc---CCCCEEECCCC
Confidence 55543 444455555555555543 444555555555555555555555555 34554421 35555555555
Q ss_pred CC
Q 037514 595 NS 596 (636)
Q Consensus 595 ~~ 596 (636)
++
T Consensus 838 ~l 839 (876)
T 4ecn_A 838 PN 839 (876)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6e-45 Score=403.84 Aligned_cols=502 Identities=22% Similarity=0.259 Sum_probs=375.5
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514 69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS 148 (636)
Q Consensus 69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 148 (636)
.+|+.+. +++++|||++|+|+++.+.+|.++++|++|+|++|+|++++++. |.++++|++|+|++|+++
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~---------f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA---------YQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT---------TTTCTTCCEEECTTCCCC
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhH---------hcCCCCCCEEEccCCcCC
Confidence 4555443 38999999999999888889999999999999999999987654 899999999999999999
Q ss_pred CCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCc-CCCccccCCCCCCEEeCcCCcCCCCCCC
Q 037514 149 KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS-QIPQWLFNISTLVTLNLRSSQLSGSIPK 227 (636)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 227 (636)
.++. ..|.++++|++|+|++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+.
T Consensus 114 ~l~~--~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 114 SLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp EECG--GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCH--HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 9854 689999999999999999999888899999999999999999976 4688889999999999999999854332
Q ss_pred CCCCCCC----CCCEEEcccccCccccchhhhccccCCcccchhhc--cCcCcc-cccccccCCCCCCEEEccCCcCccc
Q 037514 228 FPPGKMC----NLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRMNG-TISENIGQLAELVALNLYRNSWKGI 300 (636)
Q Consensus 228 ~~~~~l~----~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~ 300 (636)
.+..+. ....++++.|.+....+..+... .++.+. .+.... ..+..+..+..++...+..+.....
T Consensus 192 -~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~------~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 264 (635)
T 4g8a_A 192 -DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 264 (635)
T ss_dssp -GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC------EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred -cccchhhhhhhhhhhhcccCcccccCcccccch------hhhhhhhhcccccccccchhhcCCcccccccccccccccc
Confidence 233333 34578899998887666554433 222222 222211 1223344455555444322111100
Q ss_pred -----cCh---------------------------hhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCC
Q 037514 301 -----ITE---------------------------NHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQL 348 (636)
Q Consensus 301 -----i~~---------------------------~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 348 (636)
... ..+....+++.+.+.++ ... ....+.....++.|++.+|.+
T Consensus 265 ~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~--~~~~~~~~~~L~~L~l~~~~~ 340 (635)
T 4g8a_A 265 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV--TIE--RVKDFSYNFGWQHLELVNCKF 340 (635)
T ss_dssp CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC--EEE--ECGGGGSCCCCSEEEEESCEE
T ss_pred cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc--ccc--cccccccchhhhhhhcccccc
Confidence 000 12334455566666555 211 122234455677777777776
Q ss_pred CcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCc--cCCcccCCCCCCcEEEccCCcCCccc
Q 037514 349 GSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFG--GILSSLCSLPSLYWLRLGGNNLSGEL 426 (636)
Q Consensus 349 ~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~ 426 (636)
....+. .+..++.+++..|.+....+. ..+ ++|+.+++++|.+.. ..+..+..+.+|+.+++..+... ..
T Consensus 341 ~~~~~~---~l~~L~~l~l~~n~~~~~~~~--~~l--~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~ 412 (635)
T 4g8a_A 341 GQFPTL---KLKSLKRLTFTSNKGGNAFSE--VDL--PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TM 412 (635)
T ss_dssp SSCCCC---BCTTCCEEEEESCCSCCBCCC--CBC--TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EE
T ss_pred cCcCcc---cchhhhhcccccccCCCCccc--ccc--cccccchhhccccccccccccchhhhhhhhhhhccccccc-cc
Confidence 544332 345677777777766544322 223 788999999888753 34455567788999999888876 45
Q ss_pred CCCCCCCCCCCEEECCCCCCCCC-cchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCC-CCCc
Q 037514 427 STSLPDCSRLTALDIGGNRFLQL-PSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG-GNLP 504 (636)
Q Consensus 427 ~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~ 504 (636)
+..+..+++|+.++++.+..... ....+..+++++.+++++|.+.+..+..+.. +++|+.|++++|++. +..|
T Consensus 413 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~-----~~~L~~L~Ls~N~~~~~~~~ 487 (635)
T 4g8a_A 413 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-----LSSLEVLKMAGNSFQENFLP 487 (635)
T ss_dssp CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-----CTTCCEEECTTCEEGGGEEC
T ss_pred cccccccccccchhhhhcccccccccccccccccccccccccccccccccccccc-----chhhhhhhhhhcccccccCc
Confidence 56688899999999999887654 3456788999999999999998777665543 367799999999754 4577
Q ss_pred hhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCC-
Q 037514 505 DSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNL- 583 (636)
Q Consensus 505 ~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l- 583 (636)
..+..+++|++|+|++|++.+..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++++..| ..|..+
T Consensus 488 ~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~ 566 (635)
T 4g8a_A 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-QELQHFP 566 (635)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS-SCTTCCC
T ss_pred hhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH-HHHHhhh
Confidence 889999999999999999999999999999999999999999999999999999999999999999997555 457777
Q ss_pred CCCCeeeCCCCCCCcccccccccccCc
Q 037514 584 SGLDYLTISSSNSSLVFNIRHDWIAPF 610 (636)
Q Consensus 584 ~~L~~L~ls~n~~~~~~~~~~~~~~~~ 610 (636)
++|++|++++| +..|+|...|+..|
T Consensus 567 ~~L~~L~L~~N--p~~C~C~~~~~~~w 591 (635)
T 4g8a_A 567 SSLAFLNLTQN--DFACTCEHQSFLQW 591 (635)
T ss_dssp TTCCEEECTTC--CBCCSGGGHHHHHH
T ss_pred CcCCEEEeeCC--CCcccCCcHHHHHH
Confidence 78999999999 56667666776544
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-44 Score=389.73 Aligned_cols=449 Identities=18% Similarity=0.191 Sum_probs=351.8
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514 69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS 148 (636)
Q Consensus 69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 148 (636)
.+|..+. ++|++|++++|.+++..|..|.++++|++|++++|+++++.+.. +.++++|++|++++|.++
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV---------FKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGG---------GTTCTTCCEEECCSSCCC
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHH---------hhcccCCCEEecCCCcee
Confidence 4676655 79999999999999888889999999999999999999876543 899999999999999999
Q ss_pred CCCChhhhhCCCCCCCEEEccCCcCCC-CCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCC--CEEeCcCCcC--CC
Q 037514 149 KVTNWLQVVNELPSLVELHLSNCQLNF-PQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTL--VTLNLRSSQL--SG 223 (636)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L--~~L~L~~n~l--~~ 223 (636)
.++. . .+++|++|++++|.+.+ ..|..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+
T Consensus 83 ~lp~---~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 83 KISC---H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp EEEC---C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred ecCc---c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 7754 3 79999999999999987 467899999999999999999987 457778888 9999999998 55
Q ss_pred CCCCCCCCCCC-CCCEEEcccccCccccch-hhhccccCCcccchhhc--cCc-------CcccccccccCCCCCCEEEc
Q 037514 224 SIPKFPPGKMC-NLRRLDLAINGFSGEKEQ-FIQTLSGCNNSTLETLE--TQR-------MNGTISENIGQLAELVALNL 292 (636)
Q Consensus 224 ~~p~~~~~~l~-~L~~L~L~~n~~~~~~~~-~l~~l~~~~~~~L~~L~--~~~-------~~~~~~~~l~~l~~L~~L~l 292 (636)
..|. .+..+. +...+++++|.+.+..+. .+..++ +|+.++ .+. +.+.+| .++.+++|+.|++
T Consensus 155 ~~~~-~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~-----~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l 227 (520)
T 2z7x_B 155 EDPE-GLQDFNTESLHIVFPTNKEFHFILDVSVKTVA-----NLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTL 227 (520)
T ss_dssp CCTT-TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCS-----EEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEE
T ss_pred cccc-cccccccceEEEEeccCcchhhhhhhhhhccc-----ceeeccccccccccccceeecchh-hhccccchhhccc
Confidence 5443 233333 233577788887764443 344555 677766 333 555555 7889999999999
Q ss_pred cCCcCccccChhhhc--CCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhh-----cCCCCccee
Q 037514 293 YRNSWKGIITENHFQ--NLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWL-----KTQASVFKL 365 (636)
Q Consensus 293 ~~n~~~~~i~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L 365 (636)
++|.+.+........ ..++|++|++++| .+.+.+|..+ ..+++|+.+
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n--------------------------~l~~~~p~~~~~~~~~~l~~L~~l 281 (520)
T 2z7x_B 228 NNIETTWNSFIRILQLVWHTTVWYFSISNV--------------------------KLQGQLDFRDFDYSGTSLKALSIH 281 (520)
T ss_dssp EEEEEEHHHHHHHHHHHHTSSCSEEEEEEE--------------------------EEESCCCCCCCCCCSCCCCEEEEE
T ss_pred cccccCHHHHHHHHHHhhhCcccEEEeecc--------------------------cccCccccchhhcccccCceeEec
Confidence 999887643221111 1346666666655 4444555555 677888888
Q ss_pred ccccccCCCcch-hhHHhhc-CCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCC
Q 037514 366 TLSNAAISDTIP-DWFWGVI-SQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG 443 (636)
Q Consensus 366 ~L~~n~~~~~~~-~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 443 (636)
++++|.+ .+| .++...+ ..+|+.|++++|.+.... ....+++|++|++++|++++..|..+..+++|++|++++
T Consensus 282 ~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 357 (520)
T 2z7x_B 282 QVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357 (520)
T ss_dssp EEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS
T ss_pred cccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC
Confidence 8888887 333 3433321 146999999999886543 126789999999999999988899999999999999999
Q ss_pred CCCCCC--cchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCC
Q 037514 444 NRFLQL--PSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSEN 521 (636)
Q Consensus 444 n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 521 (636)
|++++. .+..+..+++|++|++++|++++.+|... +. .+++|++|++++|++++..|..+. ++|+.|++++|
T Consensus 358 N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~--~~--~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N 431 (520)
T 2z7x_B 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD--CS--WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN 431 (520)
T ss_dssp SCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS--CC--CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS
T ss_pred CccCccccchHHHhhCCCCCEEECCCCcCCcccccch--hc--cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC
Confidence 999974 44678999999999999999987555431 11 347889999999999877776654 79999999999
Q ss_pred ccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhh
Q 037514 522 SFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHF 580 (636)
Q Consensus 522 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 580 (636)
++. .+|..+..+++|++|++++|+++...+..+..+++|++|++++|++.+..+...|
T Consensus 432 ~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 432 KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred ccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 998 7888888999999999999999976555689999999999999999887665434
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.5e-45 Score=401.01 Aligned_cols=408 Identities=17% Similarity=0.195 Sum_probs=260.9
Q ss_pred cccCccccCCCCCCEEeCCCCCCC------C---------------------------CCCcccc---------------
Q 037514 68 SPIPEFVYSLKKLKLLDLSESSFS------G---------------------------MLPPNIG--------------- 99 (636)
Q Consensus 68 ~~~p~~~~~l~~L~~L~Ls~~~i~------~---------------------------~~~~~l~--------------- 99 (636)
+.+|+.++++++|++|+|++|.+. + ..|..+.
T Consensus 95 g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~ 174 (636)
T 4eco_A 95 GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174 (636)
T ss_dssp EEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC
T ss_pred CcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccc
Confidence 789999999999999999999761 1 1111111
Q ss_pred ----CCCCCCEEeCc--CCCCCcccccccccccccccCCCCCCCCEEecCCccCCCC-------C--------ChhhhhC
Q 037514 100 ----NLSNLQYLDLS--YQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKV-------T--------NWLQVVN 158 (636)
Q Consensus 100 ----~l~~L~~L~Ls--~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~--------~~~~~~~ 158 (636)
....++.+.+. .|++++++.. ++++++|++|++++|.+++. + .+|..++
T Consensus 175 ~~~~~~~~l~~l~l~~~~n~l~~ip~~----------l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~ 244 (636)
T 4eco_A 175 IKKSSRITLKDTQIGQLSNNITFVSKA----------VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244 (636)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGG----------GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred cccccccchhhhhhccccCCCccCCHH----------HhcccCCCEEECcCCccccccccccccccccchhcccCchhhh
Confidence 01112222222 4566664432 88999999999999999981 0 0235778
Q ss_pred --CCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCc-CCc-CCCccccCC------CCCCEEeCcCCcCCCCCCCC
Q 037514 159 --ELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDN-FNS-QIPQWLFNI------STLVTLNLRSSQLSGSIPKF 228 (636)
Q Consensus 159 --~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~-~~p~~l~~l------~~L~~L~L~~n~l~~~~p~~ 228 (636)
++++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++.+ ++|++|++++|+++ .+|..
T Consensus 245 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~ 323 (636)
T 4eco_A 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVE 323 (636)
T ss_dssp GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCH
T ss_pred hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCch
Confidence 99999999999999999999999999999999999998 988 889988887 99999999999999 77751
Q ss_pred -CCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhc
Q 037514 229 -PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQ 307 (636)
Q Consensus 229 -~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~ 307 (636)
.++++++|++|++++|.+.|.+| .+. .+++|++|++++|++. .+|. .+.
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~---------------------------~l~~L~~L~L~~N~l~-~lp~-~l~ 373 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP-AFG---------------------------SEIKLASLNLAYNQIT-EIPA-NFC 373 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC-CCE---------------------------EEEEESEEECCSSEEE-ECCT-TSE
T ss_pred hhhccCCCCCEEeCcCCcCccchh-hhC---------------------------CCCCCCEEECCCCccc-cccH-hhh
Confidence 37899999999999999887655 443 4458889999999888 4776 588
Q ss_pred CCCC-CCEEEccCCCCccEEecCCCCCCCC--CccEEEccCCCCCcCCChhhc-------CCCCcceeccccccCCCcch
Q 037514 308 NLTK-LNSLYLSSSNKSLVFTMRSDWIPPF--SLRQMAINDCQLGSAFPSWLK-------TQASVFKLTLSNAAISDTIP 377 (636)
Q Consensus 308 ~l~~-L~~L~L~~n~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~L~~n~~~~~~~ 377 (636)
.+++ |++|++++|.+. .++..+.... +|++|++++|.+.+..|..+. .+++|++|++++|.+.+..+
T Consensus 374 ~l~~~L~~L~Ls~N~l~---~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~ 450 (636)
T 4eco_A 374 GFTEQVENLSFAHNKLK---YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450 (636)
T ss_dssp EECTTCCEEECCSSCCS---SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred hhcccCcEEEccCCcCc---ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH
Confidence 8888 999999888432 3444444333 677777777777766666655 45556666666666554333
Q ss_pred hhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhc--
Q 037514 378 DWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMG-- 455 (636)
Q Consensus 378 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-- 455 (636)
..+..+ ++|++|++++|+++...+..+.... ..+.++++|++|++++|.++.++. .+.
T Consensus 451 ~~~~~l--~~L~~L~Ls~N~l~~i~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~~ 510 (636)
T 4eco_A 451 ELFSTG--SPLSSINLMGNMLTEIPKNSLKDEN-----------------ENFKNTYLLTSIDLRFNKLTKLSD-DFRAT 510 (636)
T ss_dssp HHHHTT--CCCSEEECCSSCCSBCCSSSSEETT-----------------EECTTGGGCCEEECCSSCCCBCCG-GGSTT
T ss_pred HHHccC--CCCCEEECCCCCCCCcCHHHhcccc-----------------ccccccCCccEEECcCCcCCccCh-hhhhc
Confidence 333333 5555555555555422111111111 001122256666666666664333 233
Q ss_pred CCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcc------cCcCCCCCchhhcCCCCCCEEeCcCCccCCccCh
Q 037514 456 NLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLA------SNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPT 529 (636)
Q Consensus 456 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls------~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~ 529 (636)
.+++|++|++++|++++ +|..+.. +++|++|+++ +|++.+.+|..+..+++|+.|+|++|++ +.+|.
T Consensus 511 ~l~~L~~L~Ls~N~l~~-ip~~~~~-----l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSK-FPTQPLN-----SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGG-----CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred cCCCcCEEECCCCCCCC-cChhhhc-----CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 55555555555555554 3333221 2444555553 3444445555555555555555555555 34444
Q ss_pred hhhCCCCCCeEeCcCcccc
Q 037514 530 SIGNLSHLRALYLSFNVMS 548 (636)
Q Consensus 530 ~l~~l~~L~~L~Ls~n~l~ 548 (636)
.+. ++|++|++++|++.
T Consensus 584 ~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 584 KIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCC--TTCCEEECCSCTTC
T ss_pred hHh--CcCCEEECcCCCCc
Confidence 333 44555555555443
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-44 Score=404.48 Aligned_cols=468 Identities=16% Similarity=0.190 Sum_probs=285.1
Q ss_pred cccCccccCCCCCCEEeC-CCCCCCCCCCccccCCC-CCCEE--------------eC-cCCCCCccccccccc-ccccc
Q 037514 68 SPIPEFVYSLKKLKLLDL-SESSFSGMLPPNIGNLS-NLQYL--------------DL-SYQNLKEYQITKELW-VSDLI 129 (636)
Q Consensus 68 ~~~p~~~~~l~~L~~L~L-s~~~i~~~~~~~l~~l~-~L~~L--------------~L-s~n~l~~~~~~~~~~-~~~~~ 129 (636)
+.+|+.|+++++|++|+| ++|.++|..|..-.... .+... +. ....+...... .+. .....
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~-~l~~~~~~~ 415 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD-AINRNPEMK 415 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH-HHHTCTTSC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH-HhhhCcccc
Confidence 789999999999999999 88888776442211110 00000 00 00000000000 000 00000
Q ss_pred --cCCCCCCCCEEecCC--ccCCCCCChhhhhCCCCCCCEEEccCCcCCC-----------------CCCcCcc--CCCC
Q 037514 130 --WLPDLSSSRYLHLEG--MKLSKVTNWLQVVNELPSLVELHLSNCQLNF-----------------PQSLPFL--NFTS 186 (636)
Q Consensus 130 --~~~~l~~L~~L~L~~--n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~ 186 (636)
.......++.+.+.. |.++++| ..++++++|++|+|++|.+++ .+|..++ ++++
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~IP---~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~ 492 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITFIS---KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEEEC---GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred ccccccccchhhceeccccCcccchh---HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC
Confidence 012222333444433 5666543 467777777777777777776 2666666 7888
Q ss_pred CCEEEccCCcCCcCCCccccCCCCCCEEeCcCCc-CCC-CCCCC------CCCCCCCCCEEEcccccCccccchhhhccc
Q 037514 187 LSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQ-LSG-SIPKF------PPGKMCNLRRLDLAINGFSGEKEQFIQTLS 258 (636)
Q Consensus 187 L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~------~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 258 (636)
|++|++++|.+.+.+|..|.++++|++|++++|+ +++ .+|.. .+..+++|++|++++|.+. .+|..
T Consensus 493 L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~----- 566 (876)
T 4ecn_A 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS----- 566 (876)
T ss_dssp CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH-----
T ss_pred CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh-----
Confidence 8888888887777777777888888888888887 665 44431 2344557888888877776 33320
Q ss_pred cCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCC-
Q 037514 259 GCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFS- 337 (636)
Q Consensus 259 ~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~- 337 (636)
..++.+++|+.|++++|++. .+| .|..+++|+.|++++|.+ . .++..+..+++
T Consensus 567 --------------------~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l--~-~lp~~l~~l~~~ 620 (876)
T 4ecn_A 567 --------------------ASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQI--E-EIPEDFCAFTDQ 620 (876)
T ss_dssp --------------------HHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCC--S-CCCTTSCEECTT
T ss_pred --------------------hhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCcc--c-cchHHHhhcccc
Confidence 03444557777777777776 455 567777777777777733 2 55556666666
Q ss_pred ccEEEccCCCCCcCCChhhcCCCC--cceeccccccCCCcchhhH---HhhcCCCccEEECccCcCCccCCcccCCCCCC
Q 037514 338 LRQMAINDCQLGSAFPSWLKTQAS--VFKLTLSNAAISDTIPDWF---WGVISQKLSVIDLSNNKFFGGILSSLCSLPSL 412 (636)
Q Consensus 338 L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~L~~n~~~~~~~~~~---~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 412 (636)
|++|++++|.+. .+|..+..... |+.|++++|.+.+.+|... .....++|++|++++|.++...+..+..+++|
T Consensus 621 L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L 699 (876)
T 4ecn_A 621 VEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699 (876)
T ss_dssp CCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCC
T ss_pred CCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCC
Confidence 777777777776 56666655543 7788888887776654321 11111478888888888874433344577888
Q ss_pred cEEEccCCcCCcccCCCCCC--------CCCCCEEECCCCCCCCCcchhhc--CCCCCCeEeCcCCcCCCchhhhHHhhh
Q 037514 413 YWLRLGGNNLSGELSTSLPD--------CSRLTALDIGGNRFLQLPSTSMG--NLCNLHSLDISYNHITGEIKELTNAFS 482 (636)
Q Consensus 413 ~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~ 482 (636)
+.|++++|++. .+|..+.. +++|++|++++|+++.++. .+. .+++|+.|++++|++++ +|..+..
T Consensus 700 ~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~-~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~-- 774 (876)
T 4ecn_A 700 STIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD-DFRATTLPYLSNMDVSYNCFSS-FPTQPLN-- 774 (876)
T ss_dssp SEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCG-GGSTTTCTTCCEEECCSSCCSS-CCCGGGG--
T ss_pred CEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchH-HhhhccCCCcCEEEeCCCCCCc-cchhhhc--
Confidence 88888888887 44443322 2389999999999886554 454 78888888888888775 4443332
Q ss_pred cCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCC
Q 037514 483 ACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPY 562 (636)
Q Consensus 483 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 562 (636)
+++|+.|+|++|+ ++++|.+.+.+|..+.++++|+.|++++|++ +.+|..+. ++|+
T Consensus 775 ---L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~ 830 (876)
T 4ecn_A 775 ---SSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLY 830 (876)
T ss_dssp ---CTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSC
T ss_pred ---CCCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCC
Confidence 3566777776654 4455666666666666677777777777766 44455443 4677
Q ss_pred EEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCccccc
Q 037514 563 MLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNI 602 (636)
Q Consensus 563 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~ 602 (636)
.|+|++|++...-+ ..|.....+..+.+++|....+..|
T Consensus 831 ~LdLs~N~l~~i~~-~~~~~~~~~~~~~L~~n~~~~I~gC 869 (876)
T 4ecn_A 831 ILDIADNPNISIDV-TSVCPYIEAGMYVLLYDKTQDIRGC 869 (876)
T ss_dssp EEECCSCTTCEEEC-GGGHHHHHTTCCEEECCTTSEEESC
T ss_pred EEECCCCCCCccCh-HHccccccchheeecCCCccccCCC
Confidence 77777777664332 3344444555566666655544443
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.3e-43 Score=382.89 Aligned_cols=453 Identities=18% Similarity=0.236 Sum_probs=232.8
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCC
Q 037514 81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNEL 160 (636)
Q Consensus 81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 160 (636)
++++++++++++ +|..+. ++|++|++++|.++++++.. +.++++|++|++++|.+++++ ++.|.++
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~---------~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l 99 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPD---------ISFLSELRVLRLSHNRIRSLD--FHVFLFN 99 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGG---------TTTCTTCCEEECCSCCCCEEC--TTTTTTC
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhh---------hccCCCccEEECCCCCCCcCC--HHHhCCC
Confidence 566666666663 454443 56666666666666554332 666666666666666666552 2456666
Q ss_pred CCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCc-CCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCC--C
Q 037514 161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS-QIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNL--R 237 (636)
Q Consensus 161 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L--~ 237 (636)
++|++|++++|+++.. |.. .+++|++|++++|.+++ ..|..|+++++|++|++++|.+.+ ..+..+++| +
T Consensus 100 ~~L~~L~Ls~N~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~ 172 (562)
T 3a79_B 100 QDLEYLDVSHNRLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----LDLLPVAHLHLS 172 (562)
T ss_dssp TTCCEEECTTSCCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT----TTTGGGTTSCEE
T ss_pred CCCCEEECCCCcCCcc-Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc----Cchhhhhhceee
Confidence 6677777776666643 322 56677777777777666 234667777777777777776653 234444455 7
Q ss_pred EEEcccccC--ccccchhhhccccCCcccchhhccCcCcccccc-cccCCCCCCEEEccCCc-----CccccChhhhcCC
Q 037514 238 RLDLAINGF--SGEKEQFIQTLSGCNNSTLETLETQRMNGTISE-NIGQLAELVALNLYRNS-----WKGIITENHFQNL 309 (636)
Q Consensus 238 ~L~L~~n~~--~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~-~l~~l~~L~~L~l~~n~-----~~~~i~~~~~~~l 309 (636)
+|++++|.+ .+..+..+..+.. ....+ .+..+.+.+.++. .+..+++|+.+++++|+ +.+.+ ..+..+
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~--~~l~~l 248 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNT-TVLHL-VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL--SELTRG 248 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCE-EEEEE-EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH--HHHHSC
T ss_pred EEEeecccccccccCcccccccCc-ceEEE-EecCccchhhhhhhcccccceEEEecccccccccchHHHHH--HHHhcc
Confidence 777777766 5555544443320 00000 1112333332222 33455667777777664 12211 145666
Q ss_pred CCCCEEEccCCCCccEEecC---CCCCCCCCccEEEccCCCCCcCCChhh-----cCCCCcceeccccccCCCcch-hhH
Q 037514 310 TKLNSLYLSSSNKSLVFTMR---SDWIPPFSLRQMAINDCQLGSAFPSWL-----KTQASVFKLTLSNAAISDTIP-DWF 380 (636)
Q Consensus 310 ~~L~~L~L~~n~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~L~~n~~~~~~~-~~~ 380 (636)
++|+.+++.++. ...... .......+|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ .+| .++
T Consensus 249 ~~L~~L~L~~~~--l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~ 324 (562)
T 3a79_B 249 PTLLNVTLQHIE--TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEAL 324 (562)
T ss_dssp SSCEEEEEEEEE--ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHH
T ss_pred CcceEEEecCCc--CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhh
Confidence 666666666541 110000 000111255555555555555455444 3344444444444443 122 111
Q ss_pred HhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCC
Q 037514 381 WGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNL 460 (636)
Q Consensus 381 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 460 (636)
...+ ...+|++|++++|.+.... ....+++|++|++++|.+++..+..+..+++|
T Consensus 325 ~~~~-----------------------~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 379 (562)
T 3a79_B 325 YSVF-----------------------AEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379 (562)
T ss_dssp HHHH-----------------------HTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSC
T ss_pred hhhh-----------------------ccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCC
Confidence 1110 0123444444444443111 11344455555555555555444445555555
Q ss_pred CeEeCcCCcCCCch--hhhHHhhhcCCCCcccEEEcccCcCCCCCch-hhcCCCCCCEEeCcCCccCCccChhhhCCCCC
Q 037514 461 HSLDISYNHITGEI--KELTNAFSACNVSTLETLDLASNKLGGNLPD-SLGNLLCLEYLGLSENSFLGSLPTSIGNLSHL 537 (636)
Q Consensus 461 ~~L~l~~n~l~~~~--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L 537 (636)
++|++++|++++.. |..+. .+++|++|++++|++++.+|. .+..+++|++|++++|++++..|..+. ++|
T Consensus 380 ~~L~L~~N~l~~~~~~~~~~~-----~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L 452 (562)
T 3a79_B 380 QTLILQRNGLKNFFKVALMTK-----NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKV 452 (562)
T ss_dssp CEEECCSSCCCBTTHHHHTTT-----TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTC
T ss_pred CEEECCCCCcCCcccchhhhc-----CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcC
Confidence 55555555554311 11111 124555555555555543332 355566666666666666655544432 466
Q ss_pred CeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCC
Q 037514 538 RALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNS 596 (636)
Q Consensus 538 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~ 596 (636)
++|++++|+++. +|..+..+++|++|++++|+++ .+|...|..+++|++|++++|+.
T Consensus 453 ~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 453 KVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp SEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred CEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence 666666666664 3333446666666666666666 45655566666666777776633
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7e-42 Score=372.37 Aligned_cols=446 Identities=19% Similarity=0.219 Sum_probs=296.2
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514 69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS 148 (636)
Q Consensus 69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 148 (636)
.+|..+. +++++|++++|.+++..|.+|+++++|++|++++|.++++.++. |.++++|++|++++|.++
T Consensus 45 ~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 45 HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV---------FLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT---------TTTCTTCCEEECTTSCCC
T ss_pred cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH---------hCCCCCCCEEECCCCcCC
Confidence 3665553 79999999999999888889999999999999999999876543 899999999999999999
Q ss_pred CCCChhhhhCCCCCCCEEEccCCcCCCC-CCcCccCCCCCCEEEccCCcCCcCCCccccCCCCC--CEEeCcCCcC--CC
Q 037514 149 KVTNWLQVVNELPSLVELHLSNCQLNFP-QSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTL--VTLNLRSSQL--SG 223 (636)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L--~~L~L~~n~l--~~ 223 (636)
.++. . .+++|++|++++|++.+. .|..|.++++|++|++++|.+++. .+..+++| ++|++++|.+ .+
T Consensus 114 ~lp~---~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 114 NISC---C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp EECS---C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCS
T ss_pred ccCc---c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccc
Confidence 8764 2 799999999999999874 468899999999999999999873 34555555 9999999998 65
Q ss_pred CCCCCCCCCCC-CCCEEEcccccCccccch-hhhccccCCcccchhhc--cCc-----CcccccccccCCCCCCEEEccC
Q 037514 224 SIPKFPPGKMC-NLRRLDLAINGFSGEKEQ-FIQTLSGCNNSTLETLE--TQR-----MNGTISENIGQLAELVALNLYR 294 (636)
Q Consensus 224 ~~p~~~~~~l~-~L~~L~L~~n~~~~~~~~-~l~~l~~~~~~~L~~L~--~~~-----~~~~~~~~l~~l~~L~~L~l~~ 294 (636)
..|. .+..+. ..-.+++++|.+.+..+. .+..++ +|+.++ .++ +. .....+..+++|+.+++.+
T Consensus 186 ~~~~-~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~-----~L~~L~l~~n~~~~~~l~-~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 186 GETE-SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG-----HLQLSNIKLNDENCQRLM-TFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCC-EEEECCEEEEEEEECSSSCCCCCCEEEESSEE-----EEEEEEEECCSTTHHHHH-HHHHHHHSCSSCEEEEEEE
T ss_pred cCcc-cccccCcceEEEEecCccchhhhhhhcccccc-----eEEEecccccccccchHH-HHHHHHhccCcceEEEecC
Confidence 4442 233322 111557777777664433 233344 555555 221 11 1234567888999999988
Q ss_pred CcCccccChh--hhcCCCCCCEEEccCCCCccEEecCCCC-----CCCCCccEEEccCCCCCcCCC-hhhcC---CCCcc
Q 037514 295 NSWKGIITEN--HFQNLTKLNSLYLSSSNKSLVFTMRSDW-----IPPFSLRQMAINDCQLGSAFP-SWLKT---QASVF 363 (636)
Q Consensus 295 n~~~~~i~~~--~~~~l~~L~~L~L~~n~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~-~~l~~---~~~L~ 363 (636)
+.+.+..... .....++|++|++++| ...+.++..+ ..+..|+.+++..+.+ .+| ..+.. ..+++
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNL--TITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEE--EECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCS
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEecc--Eeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcce
Confidence 8766431111 1223459999999999 5555566655 5566666666666666 344 22222 24566
Q ss_pred eeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCC
Q 037514 364 KLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG 443 (636)
Q Consensus 364 ~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 443 (636)
+|++++|.+..... ...+++|++|++++|++++..|..+.++++|++|++++
T Consensus 335 ~L~l~~n~~~~~~~----------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 386 (562)
T 3a79_B 335 MLSISDTPFIHMVC----------------------------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386 (562)
T ss_dssp EEEEESSCCCCCCC----------------------------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCS
T ss_pred EEEccCCCcccccC----------------------------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCC
Confidence 66666665542210 13445555555555555555555555555666666666
Q ss_pred CCCCCCc--chhhcCCCCCCeEeCcCCcCCCchhhh-HHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcC
Q 037514 444 NRFLQLP--STSMGNLCNLHSLDISYNHITGEIKEL-TNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSE 520 (636)
Q Consensus 444 n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 520 (636)
|++++.. +..+..+++|++|++++|++++.+|.. +. .+++|++|++++|++++..|..+. ++|+.|++++
T Consensus 387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~ 459 (562)
T 3a79_B 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA-----WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHN 459 (562)
T ss_dssp SCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC-----CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCS
T ss_pred CCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc-----CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCC
Confidence 6555533 234555666666666666665433321 11 235556666666666654444333 5777777777
Q ss_pred CccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhh
Q 037514 521 NSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHF 580 (636)
Q Consensus 521 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 580 (636)
|++. .+|..+..+++|++|++++|+++.+.+..+..+++|+.|++++|++.+..+...|
T Consensus 460 N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 460 NRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp SCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred CcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 7776 5666666777788888888877765444477788888888888888776655433
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.5e-40 Score=363.38 Aligned_cols=481 Identities=21% Similarity=0.199 Sum_probs=376.2
Q ss_pred ccC-ccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccC
Q 037514 69 PIP-EFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKL 147 (636)
Q Consensus 69 ~~p-~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 147 (636)
.+| .+|.++++|++|+|++|+|+++.+.+|.++++|++|+|++|++++++.+. |.++++|++|++++|++
T Consensus 66 ~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~---------f~~L~~L~~L~Ls~N~l 136 (635)
T 4g8a_A 66 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA---------FSGLSSLQKLVAVETNL 136 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG---------GTTCTTCCEEECTTSCC
T ss_pred CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH---------hcCCCCCCEEECCCCcC
Confidence 454 68999999999999999999888889999999999999999999987653 89999999999999999
Q ss_pred CCCCChhhhhCCCCCCCEEEccCCcCCC-CCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCC----CEEeCcCCcCC
Q 037514 148 SKVTNWLQVVNELPSLVELHLSNCQLNF-PQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTL----VTLNLRSSQLS 222 (636)
Q Consensus 148 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L----~~L~L~~n~l~ 222 (636)
+.++. ..|+++++|++|++++|.+.. ..|..+..+++|++|++++|.+++..|..+..+.++ ..++++.|.+.
T Consensus 137 ~~l~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 137 ASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp CCSTT--CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred CCCCh--hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence 99854 578999999999999999976 457788999999999999999999888888766544 47889999887
Q ss_pred CCCCCCCCCCCCCCCEEEcccccCcccc-chhhhccccCCcc----------------------cchhh-----c---cC
Q 037514 223 GSIPKFPPGKMCNLRRLDLAINGFSGEK-EQFIQTLSGCNNS----------------------TLETL-----E---TQ 271 (636)
Q Consensus 223 ~~~p~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~~~~~----------------------~L~~L-----~---~~ 271 (636)
. ++.. ......++.+++.+|...... +..+..+...... .+..+ . ..
T Consensus 215 ~-i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 215 F-IQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp E-ECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred c-cCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 4 3322 223345667777776544221 1222222210000 00000 0 11
Q ss_pred cCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcC
Q 037514 272 RMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSA 351 (636)
Q Consensus 272 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 351 (636)
......+..+....+++.+++.++.+... . .+.....++.|++.+|. ... ........++.+.+.++.....
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~--~~~~~~~L~~L~l~~~~--~~~---~~~~~l~~L~~l~l~~n~~~~~ 364 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERV-K--DFSYNFGWQHLELVNCK--FGQ---FPTLKLKSLKRLTFTSNKGGNA 364 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEEC-G--GGGSCCCCSEEEEESCE--ESS---CCCCBCTTCCEEEEESCCSCCB
T ss_pred ccccchhhhhhhhcccccccccccccccc-c--ccccchhhhhhhccccc--ccC---cCcccchhhhhcccccccCCCC
Confidence 11122344456677899999999887763 2 46778899999999883 211 1223457899999999887643
Q ss_pred CChhhcCCCCcceeccccccCCCc--chhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccC-C
Q 037514 352 FPSWLKTQASVFKLTLSNAAISDT--IPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELS-T 428 (636)
Q Consensus 352 ~~~~l~~~~~L~~L~L~~n~~~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~ 428 (636)
. ....+++|+.+++++|.+... .+..+... .+|+++++..+..... +..+..+++|+.+++.+++.....+ .
T Consensus 365 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~--~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~ 439 (635)
T 4g8a_A 365 F--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT--ISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFS 439 (635)
T ss_dssp C--CCCBCTTCCEEECCSSCCBEEEECCHHHHSC--SCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSC
T ss_pred c--ccccccccccchhhccccccccccccchhhh--hhhhhhhccccccccc-cccccccccccchhhhhcccccccccc
Confidence 3 345689999999999988644 45555555 8999999999987554 4567889999999999988765543 5
Q ss_pred CCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCC-chhhhHHhhhcCCCCcccEEEcccCcCCCCCchhh
Q 037514 429 SLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG-EIKELTNAFSACNVSTLETLDLASNKLGGNLPDSL 507 (636)
Q Consensus 429 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l 507 (636)
.+..+++++.++++.|.+.+..+..+..+++|+.|++++|++.+ ..|..+. .+++|++|+|++|++++..|..|
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~-----~l~~L~~L~Ls~N~L~~l~~~~f 514 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-----ELRNLTFLDLSQCQLEQLSPTAF 514 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT-----TCTTCCEEECTTSCCCEECTTTT
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh-----hccccCEEECCCCccCCcChHHH
Confidence 67889999999999999999999889999999999999998543 3454443 34788999999999998889999
Q ss_pred cCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCC-CCCCEEECcCCcceeecChhhh
Q 037514 508 GNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQL-SEPYMLDLYGNSWEGVITEKHF 580 (636)
Q Consensus 508 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~ 580 (636)
.++++|++|+|++|++.+..|..|.++++|++|++++|++++..|..+..+ ++|++|++++|++.+...-..|
T Consensus 515 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~ 588 (635)
T 4g8a_A 515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 588 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHH
T ss_pred cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHH
Confidence 999999999999999999889999999999999999999999999999988 6899999999999876554333
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.1e-40 Score=347.66 Aligned_cols=372 Identities=19% Similarity=0.200 Sum_probs=212.0
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCc-ccccccccccccccCCCCCCCCEEecCCccCCCCCChhhh
Q 037514 78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKE-YQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQV 156 (636)
Q Consensus 78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 156 (636)
++|++|+|++|.+++..|..|+++++|++|++++|.+.. +++.. +.++++|++|++++|.++... +..
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~---------~~~l~~L~~L~Ls~n~l~~~~--~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT---------FRGLSSLIILKLDYNQFLQLE--TGA 98 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTT---------TTTCTTCCEEECTTCTTCEEC--TTT
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccc---------ccccccCCEEeCCCCccCccC--hhh
Confidence 688999999999988888889999999999999888753 22211 666667777777776666552 245
Q ss_pred hCCCCCCCEEEccCCcCCCCCC--cCccCCCCCCEEEccCCcCCcCCCcc-ccCCCCCCEEeCcCCcCCCCCCCCCCCCC
Q 037514 157 VNELPSLVELHLSNCQLNFPQS--LPFLNFTSLSILELSYDNFNSQIPQW-LFNISTLVTLNLRSSQLSGSIPKFPPGKM 233 (636)
Q Consensus 157 ~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~~~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~~l 233 (636)
|+++++|++|++++|.+.+..+ ..+.++++|++|++++|.+++..|.. +.++++|++|++++|++.+..|. .+..+
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l 177 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNF 177 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGG
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh-hhhcc
Confidence 6666666666666666655322 22566666666666666666654544 55666666666666665543222 12222
Q ss_pred --CCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCC
Q 037514 234 --CNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTK 311 (636)
Q Consensus 234 --~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~ 311 (636)
.+|+.|++++|.+.+..+..+.. .....+..+++|++|++++|++.+
T Consensus 178 ~~~~L~~L~l~~n~l~~~~~~~~~~-------------------~~~~~~~~~~~L~~L~Ls~n~l~~------------ 226 (455)
T 3v47_A 178 QGKHFTLLRLSSITLQDMNEYWLGW-------------------EKCGNPFKNTSITTLDLSGNGFKE------------ 226 (455)
T ss_dssp TTCEEEEEECTTCBCTTCSTTCTTH-------------------HHHCCTTTTCEEEEEECTTSCCCH------------
T ss_pred ccccccccccccCcccccchhhccc-------------------cccccccccceeeeEecCCCcccc------------
Confidence 34444444444443322211100 000011122233333333333333
Q ss_pred CCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCC---CCcceeccccccCCCcchhhHHhhcCCCc
Q 037514 312 LNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQ---ASVFKLTLSNAAISDTIPDWFWGVISQKL 388 (636)
Q Consensus 312 L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~L~~n~~~~~~~~~~~~~~~~~L 388 (636)
..|..+... .+++.|++++|...+...
T Consensus 227 ---------------------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----------- 256 (455)
T 3v47_A 227 ---------------------------------------SMAKRFFDAIAGTKIQSLILSNSYNMGSSF----------- 256 (455)
T ss_dssp ---------------------------------------HHHHHHHHHTTTCCEEEEECTTCTTTSCCT-----------
T ss_pred ---------------------------------------cchhhhhccccccceeeEeecccccccccc-----------
Confidence 222222111 333333333333222100
Q ss_pred cEEECccCcCCccCCcccC--CCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCc
Q 037514 389 SVIDLSNNKFFGGILSSLC--SLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDIS 466 (636)
Q Consensus 389 ~~L~ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 466 (636)
..+.+.+..+..+. ..++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 257 -----~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 257 -----GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331 (455)
T ss_dssp -----TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred -----chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence 00011111111111 12466666666666666666666666777777777777766666666667777777777
Q ss_pred CCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcc
Q 037514 467 YNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNV 546 (636)
Q Consensus 467 ~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~ 546 (636)
+|++++..+..+.. +++|++|++++|++++..|..+..+++|++|++++|++.+..+..+..+++|++|++++|+
T Consensus 332 ~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 332 QNFLGSIDSRMFEN-----LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp SSCCCEECGGGGTT-----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCCcChhHhcC-----cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 77766555554432 3556777777777776667777777888888888888776666666777888888888887
Q ss_pred cccccc
Q 037514 547 MSRIIS 552 (636)
Q Consensus 547 l~~~~~ 552 (636)
+++..|
T Consensus 407 l~~~~~ 412 (455)
T 3v47_A 407 WDCSCP 412 (455)
T ss_dssp BCCCTT
T ss_pred cccCCC
Confidence 776654
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.8e-38 Score=335.39 Aligned_cols=370 Identities=20% Similarity=0.241 Sum_probs=187.4
Q ss_pred CCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCC-CCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCE
Q 037514 135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNF-PQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVT 213 (636)
Q Consensus 135 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 213 (636)
++|++|++++|.++..+ +..|+++++|++|++++|.+.+ ..+..|.++++|++|++++|.+++..|..|.++++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELN--ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEEC--TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCC--hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 45666666666665552 2455666666666666665543 23445566666666666666666555555666666666
Q ss_pred EeCcCCcCCCCCCC-CCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEc
Q 037514 214 LNLRSSQLSGSIPK-FPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNL 292 (636)
Q Consensus 214 L~L~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l 292 (636)
|++++|.+.+..+. ..+.++++|++|++++|.+.+..|.. .+..+++|++|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------------------~~~~l~~L~~L~L 161 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS--------------------------FFLNMRRFHVLDL 161 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG--------------------------GGGGCTTCCEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc--------------------------ccCCCCcccEEeC
Confidence 66666665542221 11455555555555555554332211 1233345555555
Q ss_pred cCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChh--------hcCCCCcce
Q 037514 293 YRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSW--------LKTQASVFK 364 (636)
Q Consensus 293 ~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~ 364 (636)
++|++.+..+. .+..+ ...+++.|++++|.+.+..+.. +..+++|++
T Consensus 162 ~~n~l~~~~~~-~l~~l------------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~ 216 (455)
T 3v47_A 162 TFNKVKSICEE-DLLNF------------------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216 (455)
T ss_dssp TTCCBSCCCTT-TSGGG------------------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEE
T ss_pred CCCcccccChh-hhhcc------------------------ccccccccccccCcccccchhhccccccccccccceeee
Confidence 55555543332 23222 1134555555555555433322 234567778
Q ss_pred eccccccCCCcchhhHHhhc-CCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCC--CCCCCCEEEC
Q 037514 365 LTLSNAAISDTIPDWFWGVI-SQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLP--DCSRLTALDI 441 (636)
Q Consensus 365 L~L~~n~~~~~~~~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L 441 (636)
|++++|.+.+..|..+.... ..+|+.|++++|...+... ..+.+....+..+. ..++|++|++
T Consensus 217 L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l 282 (455)
T 3v47_A 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDL 282 (455)
T ss_dssp EECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEEC
T ss_pred EecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEe
Confidence 88888877777776665431 1456666666665433211 01111111111111 1245666666
Q ss_pred CCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCC
Q 037514 442 GGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSEN 521 (636)
Q Consensus 442 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 521 (636)
++|.+.+..+..+..+++|++|++++|++++..+..+.. +++|++|++++|.+++..+..+.++++|++|++++|
T Consensus 283 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-----LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-----CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred cCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-----cccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence 666666655555555666666666655555444433321 234455555555554444444455555555555555
Q ss_pred ccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecC
Q 037514 522 SFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVIT 576 (636)
Q Consensus 522 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 576 (636)
++.+..|..|..+++|++|++++|++++..+..+..+++|++|++++|++.+.+|
T Consensus 358 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 5544444444555555555555555544444444444555555555555444444
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.7e-38 Score=332.60 Aligned_cols=404 Identities=20% Similarity=0.206 Sum_probs=247.0
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCC-------------CCEEec
Q 037514 76 SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSS-------------SRYLHL 142 (636)
Q Consensus 76 ~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~-------------L~~L~L 142 (636)
+.++|++|++++|.+ +.+|.+|+++++|++|++++|.+++..+.. ++++++ +++|++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~---------~~~l~~L~~l~l~~c~~~~l~~L~l 78 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPG---------NGEQREMAVSRLRDCLDRQAHELEL 78 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTT---------SCCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcc---------cccchhcchhhhhhhhccCCCEEEe
Confidence 357999999999999 789999999999999999999887533321 666665 499999
Q ss_pred CCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCC
Q 037514 143 EGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLS 222 (636)
Q Consensus 143 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~ 222 (636)
++|.+++++.+ .++|++|++++|.+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|+++
T Consensus 79 ~~~~l~~lp~~------~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 79 NNLGLSSLPEL------PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp TTSCCSCCCSC------CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred cCCccccCCCC------cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence 99999887642 3689999999999887 4433 4789999999999887 3432 268999999999998
Q ss_pred CCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccC
Q 037514 223 GSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIIT 302 (636)
Q Consensus 223 ~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~ 302 (636)
+ +|. ++++++|++|++++|++++ +|. . ..+|++|++++|++.+ +|
T Consensus 145 ~-lp~--~~~l~~L~~L~l~~N~l~~-lp~---------------------------~---~~~L~~L~L~~n~l~~-l~ 189 (454)
T 1jl5_A 145 K-LPE--LQNSSFLKIIDVDNNSLKK-LPD---------------------------L---PPSLEFIAAGNNQLEE-LP 189 (454)
T ss_dssp S-CCC--CTTCTTCCEEECCSSCCSC-CCC---------------------------C---CTTCCEEECCSSCCSS-CC
T ss_pred C-Ccc--cCCCCCCCEEECCCCcCcc-cCC---------------------------C---cccccEEECcCCcCCc-Cc
Confidence 4 773 7899999999999998874 221 1 1378999999999887 55
Q ss_pred hhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHh
Q 037514 303 ENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWG 382 (636)
Q Consensus 303 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~ 382 (636)
.++++++|+.|++++|.+.. ++. ...+|++|++++|.+. .+|. +..+++|++|++++|++.+. |..
T Consensus 190 --~~~~l~~L~~L~l~~N~l~~---l~~---~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l-~~~--- 255 (454)
T 1jl5_A 190 --ELQNLPFLTAIYADNNSLKK---LPD---LPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTL-PDL--- 255 (454)
T ss_dssp --CCTTCTTCCEEECCSSCCSS---CCC---CCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSC-CSC---
T ss_pred --cccCCCCCCEEECCCCcCCc---CCC---CcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCcc-ccc---
Confidence 48889999999999884332 121 1248888899888887 5563 77888899999998888763 322
Q ss_pred hcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCe
Q 037514 383 VISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHS 462 (636)
Q Consensus 383 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 462 (636)
. ++|++|++++|++++ +|.. +++|++|++++|++++. +.. .++|++|++++|.+++... ..++|++
T Consensus 256 ~--~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i~~----~~~~L~~ 321 (454)
T 1jl5_A 256 P--PSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSLCD----LPPSLEE 321 (454)
T ss_dssp C--TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEECC----CCTTCCE
T ss_pred c--cccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcccC----CcCcCCE
Confidence 1 688888888888876 3332 37888888888888752 221 2578888888888876431 1257888
Q ss_pred EeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCC--ccChhhhCCCCCCeE
Q 037514 463 LDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLG--SLPTSIGNLSHLRAL 540 (636)
Q Consensus 463 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~--~~p~~l~~l~~L~~L 540 (636)
|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++.+ .+|..+.. |
T Consensus 322 L~Ls~N~l~~-lp~~--------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~------L 382 (454)
T 1jl5_A 322 LNVSNNKLIE-LPAL--------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED------L 382 (454)
T ss_dssp EECCSSCCSC-CCCC--------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE------E
T ss_pred EECCCCcccc-cccc--------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh------h
Confidence 8888888875 3331 367788888888888 4555 46788888888888887 56654432 2
Q ss_pred eCcCccccccccccccCCCCCCEEECcCCccee--ecChhhhcCCCCCCeeeCCCCCCC
Q 037514 541 YLSFNVMSRIISENIGQLSEPYMLDLYGNSWEG--VITEKHFRNLSGLDYLTISSSNSS 597 (636)
Q Consensus 541 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~ls~n~~~ 597 (636)
+.|...+.+|.. +++|++|++++|++++ .+| .+++.|++++|.+.
T Consensus 383 --~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP-------~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 383 --RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP-------ESVEDLRMNSERVV 429 (454)
T ss_dssp --ECCC-----------------------------------------------------
T ss_pred --hhcccccccccc---cCcCCEEECCCCcCCccccch-------hhHhheeCcCcccC
Confidence 345555555543 4789999999999986 444 35677788887543
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.3e-37 Score=327.64 Aligned_cols=374 Identities=19% Similarity=0.158 Sum_probs=275.1
Q ss_pred cCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCC
Q 037514 70 IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSK 149 (636)
Q Consensus 70 ~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 149 (636)
.+..+.++++|++|++++|.+++. | .++++++|++|++++|.+++++ ++.+++|++|++++|.+++
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~------------~~~l~~L~~L~Ls~N~l~~ 99 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD------------LSQNTNLTYLACDSNKLTN 99 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC------------CTTCTTCSEEECCSSCCSC
T ss_pred cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc------------cccCCCCCEEECcCCCCce
Confidence 345677889999999999999864 5 6999999999999999998853 7788999999999999888
Q ss_pred CCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCC
Q 037514 150 VTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFP 229 (636)
Q Consensus 150 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 229 (636)
. .++++++|++|++++|++++. + +..+++|++|++++|.+++ ++ ++++++|++|++++|+..+. ++
T Consensus 100 ~-----~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~---~~ 165 (457)
T 3bz5_A 100 L-----DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITK---LD 165 (457)
T ss_dssp C-----CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCC---CC
T ss_pred e-----ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccc---cc
Confidence 6 277889999999999988874 3 7888899999999998888 33 77888899999988865545 34
Q ss_pred CCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCC
Q 037514 230 PGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNL 309 (636)
Q Consensus 230 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l 309 (636)
+..+++|++|++++|.+++. | ++.+++|+.|++++|++++. .+..+
T Consensus 166 ~~~l~~L~~L~ls~n~l~~l----------------------------~--l~~l~~L~~L~l~~N~l~~~----~l~~l 211 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITEL----------------------------D--VSQNKLLNRLNCDTNNITKL----DLNQN 211 (457)
T ss_dssp CTTCTTCCEEECCSSCCCCC----------------------------C--CTTCTTCCEEECCSSCCSCC----CCTTC
T ss_pred cccCCcCCEEECCCCcccee----------------------------c--cccCCCCCEEECcCCcCCee----ccccC
Confidence 67788888888888877642 1 34456788888888877763 25666
Q ss_pred CCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCcc
Q 037514 310 TKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLS 389 (636)
Q Consensus 310 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~ 389 (636)
++|+.|++++| .+.+ +| +..+++|++|++++|++++..+..+ ++|+
T Consensus 212 ~~L~~L~Ls~N--------------------------~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l-----~~L~ 257 (457)
T 3bz5_A 212 IQLTFLDCSSN--------------------------KLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTL-----SKLT 257 (457)
T ss_dssp TTCSEEECCSS--------------------------CCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTC-----TTCC
T ss_pred CCCCEEECcCC--------------------------cccc-cC--ccccCCCCEEEeeCCcCCCcCHHHC-----CCCC
Confidence 66666666666 3433 23 4455666666666666665543222 5666
Q ss_pred EEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCc
Q 037514 390 VIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNH 469 (636)
Q Consensus 390 ~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 469 (636)
.|++++| +|+.|++++|.+.+.+| +..+++|++|++++|...+..+. ..++|+.|++++|
T Consensus 258 ~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~- 317 (457)
T 3bz5_A 258 TLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN- 317 (457)
T ss_dssp EEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-
T ss_pred EEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-
Confidence 6666554 34556667776665555 45677788888888876665552 4466777776655
Q ss_pred CCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccc
Q 037514 470 ITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSR 549 (636)
Q Consensus 470 l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~ 549 (636)
++|++|++++|++++. + ++.+++|+.|++++|++.+ ++.|+.|++++|.+.+
T Consensus 318 -----------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g 369 (457)
T 3bz5_A 318 -----------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEA 369 (457)
T ss_dssp -----------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEE
T ss_pred -----------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEe
Confidence 4568999999999864 3 8889999999999998875 3467777888898887
Q ss_pred cccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCC
Q 037514 550 IISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTIS 592 (636)
Q Consensus 550 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls 592 (636)
. ..+..|..+++++|+++|.+|...+....++.....+
T Consensus 370 ~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~ 407 (457)
T 3bz5_A 370 E-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPG 407 (457)
T ss_dssp E-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEES
T ss_pred c-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCC
Confidence 5 2455678889999999999998766665655554444
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.3e-37 Score=324.29 Aligned_cols=394 Identities=22% Similarity=0.261 Sum_probs=266.9
Q ss_pred cccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCC-------------CEEeCcCCCCCcccccccccccccccCCCC
Q 037514 68 SPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNL-------------QYLDLSYQNLKEYQITKELWVSDLIWLPDL 134 (636)
Q Consensus 68 ~~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L-------------~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l 134 (636)
+.+|+.++++++|++|++++|.+.|.+|.+++++++| ++|++++|.+++++. + .
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~-----------~--~ 90 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE-----------L--P 90 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS-----------C--C
T ss_pred hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC-----------C--c
Confidence 6799999999999999999999999999999999875 999999999988653 2 3
Q ss_pred CCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEE
Q 037514 135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTL 214 (636)
Q Consensus 135 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 214 (636)
++|++|++++|.+++++. ..++|++|++++|++.+.... .++|++|++++|.+++ +| .++++++|++|
T Consensus 91 ~~L~~L~l~~n~l~~lp~------~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPE------LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKII 158 (454)
T ss_dssp TTCSEEECCSSCCSSCCC------CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred CCCCEEEccCCcCCcccc------ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEE
Confidence 689999999999998754 248999999999998864321 1799999999999998 77 59999999999
Q ss_pred eCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccC
Q 037514 215 NLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYR 294 (636)
Q Consensus 215 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 294 (636)
++++|++++ +|.. .++|++|++++|.+.+ +| .++.+++|++|++++
T Consensus 159 ~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~----------------------------~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 159 DVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP----------------------------ELQNLPFLTAIYADN 204 (454)
T ss_dssp ECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC----------------------------CCTTCTTCCEEECCS
T ss_pred ECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc----------------------------cccCCCCCCEEECCC
Confidence 999999984 6643 3699999999998875 22 245667899999999
Q ss_pred CcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCC
Q 037514 295 NSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISD 374 (636)
Q Consensus 295 n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~ 374 (636)
|++.+ +|. ..++|++|++++|.+. .++ .+..+++|++|++++|.+.+ +|. ..++|++|++++|++.+
T Consensus 205 N~l~~-l~~----~~~~L~~L~l~~n~l~---~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 205 NSLKK-LPD----LPLSLESIVAGNNILE---ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD 271 (454)
T ss_dssp SCCSS-CCC----CCTTCCEEECCSSCCS---SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC
T ss_pred CcCCc-CCC----CcCcccEEECcCCcCC---ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc
Confidence 99887 554 2358999999998443 334 47788899999999998875 343 24789999999999987
Q ss_pred cchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhh
Q 037514 375 TIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSM 454 (636)
Q Consensus 375 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 454 (636)
. |... ++|++|++++|++++.. . ..++|++|++++|++++ ++. ..++|++|++++|++++++.
T Consensus 272 l-~~~~-----~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~lp~--- 334 (454)
T 1jl5_A 272 L-PELP-----QSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIELPA--- 334 (454)
T ss_dssp C-CCCC-----TTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSCCCC---
T ss_pred c-Cccc-----CcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCccccccc---
Confidence 3 3321 78999999999987632 1 12689999999999875 222 12589999999999998554
Q ss_pred cCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCC--CCchhhcCCCCCCEEeCcCCccCCccChhhh
Q 037514 455 GNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGG--NLPDSLGNLLCLEYLGLSENSFLGSLPTSIG 532 (636)
Q Consensus 455 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~ 532 (636)
.+++|++|++++|++++ +|. .+++|++|++++|++++ .+|..+.. ++.|.+.+.+|..
T Consensus 335 -~~~~L~~L~L~~N~l~~-lp~--------~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~-- 394 (454)
T 1jl5_A 335 -LPPRLERLIASFNHLAE-VPE--------LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL-- 394 (454)
T ss_dssp -CCTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC----------
T ss_pred -cCCcCCEEECCCCcccc-ccc--------hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc--
Confidence 26899999999999984 443 13788999999999997 56655442 2346667777763
Q ss_pred CCCCCCeEeCcCccccc--cccccccCCCCCCEEECcCCcceeecCh
Q 037514 533 NLSHLRALYLSFNVMSR--IISENIGQLSEPYMLDLYGNSWEGVITE 577 (636)
Q Consensus 533 ~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 577 (636)
+++|++|++++|.+++ .+|. +++.|.+.+|.+.+.++.
T Consensus 395 -~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 395 -PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp -----------------------------------------------
T ss_pred -cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCcccc
Confidence 5789999999999987 4443 466677888887765544
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.4e-35 Score=313.09 Aligned_cols=346 Identities=25% Similarity=0.349 Sum_probs=185.7
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhh
Q 037514 76 SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQ 155 (636)
Q Consensus 76 ~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 155 (636)
.++++++|+++++.+.. +| .+..+++|++|++++|.++++++ +.++++|++|++++|.+...+
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~-----------~~~l~~L~~L~l~~n~l~~~~---- 106 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP-----------LKNLTKLVDILMNNNQIADIT---- 106 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-----------GTTCTTCCEEECCSSCCCCCG----
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh-----------hhccccCCEEECCCCccccCh----
Confidence 35688888888888764 44 37788888888888888776543 666777777777777766652
Q ss_pred hhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCC
Q 037514 156 VVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCN 235 (636)
Q Consensus 156 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~ 235 (636)
.++++++|++|++++|.+.+..+ +.++++|++|++++|.+.+ ++ .+.++++|++|+++ +.+.+. .++.++++
T Consensus 107 ~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~---~~~~~l~~ 178 (466)
T 1o6v_A 107 PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL---KPLANLTT 178 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC---GGGTTCTT
T ss_pred hhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc---hhhccCCC
Confidence 26666667777776666665432 5666666666666666655 22 35556666666654 222211 12445555
Q ss_pred CCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEE
Q 037514 236 LRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSL 315 (636)
Q Consensus 236 L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L 315 (636)
|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ ++.+++|+.|
T Consensus 179 L~~L~l~~n~l~~~-----------------------------~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L 226 (466)
T 1o6v_A 179 LERLDISSNKVSDI-----------------------------SVLAKLTNLESLIATNNQISDITP---LGILTNLDEL 226 (466)
T ss_dssp CCEEECCSSCCCCC-----------------------------GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEE
T ss_pred CCEEECcCCcCCCC-----------------------------hhhccCCCCCEEEecCCccccccc---ccccCCCCEE
Confidence 55555555544321 012223344444444444433211 2233333333
Q ss_pred EccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECcc
Q 037514 316 YLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSN 395 (636)
Q Consensus 316 ~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~ 395 (636)
+++ +|.+.+. ..+..+ ++|++|++++
T Consensus 227 ~l~--------------------------------------------------~n~l~~~--~~l~~l--~~L~~L~l~~ 252 (466)
T 1o6v_A 227 SLN--------------------------------------------------GNQLKDI--GTLASL--TNLTDLDLAN 252 (466)
T ss_dssp ECC--------------------------------------------------SSCCCCC--GGGGGC--TTCSEEECCS
T ss_pred ECC--------------------------------------------------CCCcccc--hhhhcC--CCCCEEECCC
Confidence 333 3333221 112222 4555555555
Q ss_pred CcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchh
Q 037514 396 NKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIK 475 (636)
Q Consensus 396 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 475 (636)
|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|++.+..+ +..+++|++|++++|++++..+
T Consensus 253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence 55544322 4555556666666655553322 4555566666666666555443 4555566666666665554433
Q ss_pred hhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccc
Q 037514 476 ELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSR 549 (636)
Q Consensus 476 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~ 549 (636)
+ . .+++|++|++++|++++. ..+..+++|+.|++++|++.+..| +..+++|++|++++|++++
T Consensus 327 --~---~--~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 --V---S--SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp --G---G--GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred --h---c--cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 1 1 124555555555555532 245555556666666665555444 4555555556665555554
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5e-35 Score=310.62 Aligned_cols=198 Identities=25% Similarity=0.338 Sum_probs=166.5
Q ss_pred hcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCC
Q 037514 356 LKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSR 435 (636)
Q Consensus 356 l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 435 (636)
+..+++|++|++++|.+.+..+ +..+ ++|++|++++|++++. ..+..+++|++|++++|.+.+..+ +..+++
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~--~~~l--~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 266 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP--LGIL--TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTK 266 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGC--TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred hccCCCCCEEEecCCccccccc--cccc--CCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCC
Confidence 4556666666666666666555 3344 8999999999999764 467889999999999999986554 889999
Q ss_pred CCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCE
Q 037514 436 LTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEY 515 (636)
Q Consensus 436 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 515 (636)
|++|++++|.+++.++ +..+++|++|++++|++.+..+ + . .+++|++|++++|++++..| +..+++|+.
T Consensus 267 L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~---~--~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I---S--NLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--G---G--GCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--h---c--CCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 9999999999998776 8899999999999999987554 2 2 24888999999999997665 789999999
Q ss_pred EeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecCh
Q 037514 516 LGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITE 577 (636)
Q Consensus 516 L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 577 (636)
|++++|++.+. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++ +|.
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~ 392 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APV 392 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCB
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cch
Confidence 99999999864 468999999999999999999877 8999999999999999986 454
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.2e-35 Score=309.44 Aligned_cols=360 Identities=16% Similarity=0.147 Sum_probs=273.7
Q ss_pred CCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEc
Q 037514 89 SFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHL 168 (636)
Q Consensus 89 ~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 168 (636)
...+..+..++++++|++|++++|.+++++. +..+++|++|++++|.+++++ ++.+++|++|++
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----------l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~L~~L~L 92 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDMTG-----------IEKLTGLTKLICTSNNITTLD-----LSQNTNLTYLAC 92 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCCTT-----------GGGCTTCSEEECCSSCCSCCC-----CTTCTTCSEEEC
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccChh-----------hcccCCCCEEEccCCcCCeEc-----cccCCCCCEEEC
Confidence 3444556678899999999999999987642 788899999999999988862 778899999999
Q ss_pred cCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCcc
Q 037514 169 SNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSG 248 (636)
Q Consensus 169 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~ 248 (636)
++|.+++. + +.++++|++|++++|.+++ +| ++++++|++|++++|++++ ++++++++|++|++++|...+
T Consensus 93 s~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~----l~l~~l~~L~~L~l~~n~~~~ 162 (457)
T 3bz5_A 93 DSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE----IDVSHNTQLTELDCHLNKKIT 162 (457)
T ss_dssp CSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC----CCCTTCTTCCEEECTTCSCCC
T ss_pred cCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce----eccccCCcCCEEECCCCCccc
Confidence 99998875 2 7888999999999998887 44 7888899999999998885 347788888888888885433
Q ss_pred ccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEec
Q 037514 249 EKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTM 328 (636)
Q Consensus 249 ~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~ 328 (636)
.+ .++.+++|++|++++|++++ ++ +..+++|+.|++++|
T Consensus 163 ~~-----------------------------~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N-------- 201 (457)
T 3bz5_A 163 KL-----------------------------DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTN-------- 201 (457)
T ss_dssp CC-----------------------------CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSS--------
T ss_pred cc-----------------------------ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCC--------
Confidence 21 13455678888888888776 33 556666666666665
Q ss_pred CCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCC
Q 037514 329 RSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCS 408 (636)
Q Consensus 329 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 408 (636)
.+.+. .+..+++|++|++++|++++. | +..+ ++|++|++++|++++.. ...
T Consensus 202 ------------------~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l--~~L~~L~l~~N~l~~~~---~~~ 252 (457)
T 3bz5_A 202 ------------------NITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPL--TQLTYFDCSVNPLTELD---VST 252 (457)
T ss_dssp ------------------CCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTC--TTCSEEECCSSCCSCCC---CTT
T ss_pred ------------------cCCee---ccccCCCCCEEECcCCccccc-C--cccc--CCCCEEEeeCCcCCCcC---HHH
Confidence 44332 256678888888888888874 4 4444 78888888888887653 456
Q ss_pred CCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCc
Q 037514 409 LPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVST 488 (636)
Q Consensus 409 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 488 (636)
+++|+.|++++| +|++|++++|.+.+..| ++.+++|+.|++++|+..+.+|. ..++
T Consensus 253 l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~--------~~~~ 308 (457)
T 3bz5_A 253 LSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC--------QAAG 308 (457)
T ss_dssp CTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC--------TTCC
T ss_pred CCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc--------CCCc
Confidence 777888887665 45667788888776655 56789999999999987766653 1244
Q ss_pred ccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcC
Q 037514 489 LETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYG 568 (636)
Q Consensus 489 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 568 (636)
|+.|++++| ++|++|++++|++++. + +.++++|+.|++++|++++ ++.|..|++++
T Consensus 309 L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~ 364 (457)
T 3bz5_A 309 ITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALN 364 (457)
T ss_dssp CSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGG
T ss_pred ceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccC
Confidence 555555444 7899999999999974 3 8899999999999999987 25677788999
Q ss_pred CcceeecChhhhcCCCCCCeeeCCCCCCCc
Q 037514 569 NSWEGVITEKHFRNLSGLDYLTISSSNSSL 598 (636)
Q Consensus 569 n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~ 598 (636)
|.+.|. ..+..|+.++++.|+++.
T Consensus 365 n~l~g~------~~~~~l~~l~l~~N~l~g 388 (457)
T 3bz5_A 365 NNFEAE------GQTITMPKETLTNNSLTI 388 (457)
T ss_dssp TSEEEE------EEEEECCCBCCBTTBEEE
T ss_pred CcEEec------ceeeecCccccccCcEEE
Confidence 999875 255678899999997653
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7e-35 Score=310.92 Aligned_cols=312 Identities=19% Similarity=0.202 Sum_probs=276.4
Q ss_pred CCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcce
Q 037514 285 AELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFK 364 (636)
Q Consensus 285 ~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 364 (636)
++++.|++++|++++..+ ..|.++++|++|++++| .+....+..+..+++|++|++++|.+.+..+..+.++++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNEN--IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp TTCSEEECCSSCCCEECT-TTTTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCcEEECCCCccceECH-hHccCCCCCCEEECCCC--ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 478999999999998444 48999999999999999 666777888899999999999999998777778899999999
Q ss_pred eccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCC
Q 037514 365 LTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGN 444 (636)
Q Consensus 365 L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 444 (636)
|++++|.+.+..+..+..+ ++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+.++++|++|++++|
T Consensus 109 L~Ls~n~i~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDL--YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp EECTTSCCCEECTTTTTTC--TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred EECCCCccccCChhHcccc--ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 9999999998888888887 89999999999999888889999999999999999998766667899999999999999
Q ss_pred CCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccC
Q 037514 445 RFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFL 524 (636)
Q Consensus 445 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~ 524 (636)
.+.+..+..+..+++|++|++++|+..+.++..... ..+|++|++++|++++..+..+..+++|+.|+|++|.+.
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-----GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-----TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCccccc-----CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 999988888999999999999999887776654332 247899999999999665578999999999999999999
Q ss_pred CccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCccccccc
Q 037514 525 GSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRH 604 (636)
Q Consensus 525 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~ 604 (636)
+..+..|..+++|++|++++|++++..|..|..+++|+.|++++|+++ .++...|..+++|++|++++|+ ..|+|..
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~--l~c~c~~ 338 (477)
T 2id5_A 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNP--LACDCRL 338 (477)
T ss_dssp EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGGGBSCGGGCCEEECCSSC--EECSGGG
T ss_pred ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHhHcCCCcccCEEEccCCC--ccCccch
Confidence 888888999999999999999999999999999999999999999998 4788889999999999999995 4566666
Q ss_pred ccccC
Q 037514 605 DWIAP 609 (636)
Q Consensus 605 ~~~~~ 609 (636)
.|...
T Consensus 339 ~~~~~ 343 (477)
T 2id5_A 339 LWVFR 343 (477)
T ss_dssp HHHHT
T ss_pred HhHHh
Confidence 66543
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=299.75 Aligned_cols=323 Identities=18% Similarity=0.190 Sum_probs=235.1
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCC
Q 037514 81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNEL 160 (636)
Q Consensus 81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 160 (636)
+.++.++++++ .+|..+. +++++|++++|.++++.+.. |.++++|++|++++|.++.+. +..|.++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~---------~~~l~~L~~L~L~~n~i~~~~--~~~~~~l 79 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDE---------FASFPHLEELELNENIVSAVE--PGAFNNL 79 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTT---------TTTCTTCCEEECTTSCCCEEC--TTTTTTC
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhH---------ccCCCCCCEEECCCCccCEeC--hhhhhCC
Confidence 67888888887 5666553 57899999999888875432 777888888888888777762 2567777
Q ss_pred CCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEE
Q 037514 161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLD 240 (636)
Q Consensus 161 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~ 240 (636)
++|++|+|++|.+....+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..+ ..+.++++|++|+
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 158 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLT 158 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEE
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCEEE
Confidence 888888888887777666677777778888887777777667777777777777777777764322 2466667777777
Q ss_pred cccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCC
Q 037514 241 LAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSS 320 (636)
Q Consensus 241 L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n 320 (636)
+++|.+++..+. .+..+++|+.|++++|.+.+. +...|..+++|+.|++++|
T Consensus 159 l~~n~l~~~~~~---------------------------~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 159 LEKCNLTSIPTE---------------------------ALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp EESCCCSSCCHH---------------------------HHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEEEECC
T ss_pred CCCCcCcccChh---------------------------HhcccCCCcEEeCCCCcCcEe-ChhhcccCcccceeeCCCC
Confidence 776666543322 233344666666666666653 3335556666666666555
Q ss_pred CCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCc
Q 037514 321 NKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFG 400 (636)
Q Consensus 321 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 400 (636)
...+.++.......+|++|++++|.+++..+..+..+ ++|++|++++|.+++
T Consensus 211 --------------------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 211 --------------------------PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL--VYLRFLNLSYNPIST 262 (477)
T ss_dssp --------------------------TTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC--TTCCEEECCSSCCCE
T ss_pred --------------------------ccccccCcccccCccccEEECcCCcccccCHHHhcCc--cccCeeECCCCcCCc
Confidence 4334444444444578888888888876666667666 788888888888887
Q ss_pred cCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCch
Q 037514 401 GILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEI 474 (636)
Q Consensus 401 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 474 (636)
..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++.++..|..+++|++|++++|++....
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 77778888899999999999998888888889999999999999999888888888899999999999887543
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.8e-33 Score=286.99 Aligned_cols=310 Identities=19% Similarity=0.225 Sum_probs=190.5
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhh
Q 037514 76 SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQ 155 (636)
Q Consensus 76 ~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 155 (636)
.++++++|+++++.+....+..+.++++|++|++++|.++++++.. +.++++|++|++++|.++..+. .
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~---------~~~l~~L~~L~L~~n~l~~~~~--~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA---------FAYAHTIQKLYMGFNAIRYLPP--H 111 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT---------TTTCTTCCEEECCSSCCCCCCT--T
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhh---------ccCCCCcCEEECCCCCCCcCCH--H
Confidence 4578999999999888655555788999999999999888766532 7788888888888888877743 5
Q ss_pred hhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCC
Q 037514 156 VVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCN 235 (636)
Q Consensus 156 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~ 235 (636)
.++++++|++|++++|.+....+..|.++++|++|++++|.+.+..|..+.++++|++|++++|++++ .+++.+++
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~~ 187 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH----VDLSLIPS 187 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB----CCGGGCTT
T ss_pred HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc----cccccccc
Confidence 67778888888888888876666667778888888888888877667777777888888888877763 24556677
Q ss_pred CCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEE
Q 037514 236 LRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSL 315 (636)
Q Consensus 236 L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L 315 (636)
|++|++++|.+.+. ....+|++|++++|.+... +. ...+
T Consensus 188 L~~L~l~~n~l~~~--------------------------------~~~~~L~~L~l~~n~l~~~-~~---~~~~----- 226 (390)
T 3o6n_A 188 LFHANVSYNLLSTL--------------------------------AIPIAVEELDASHNSINVV-RG---PVNV----- 226 (390)
T ss_dssp CSEEECCSSCCSEE--------------------------------ECCSSCSEEECCSSCCCEE-EC---CCCS-----
T ss_pred cceeeccccccccc--------------------------------CCCCcceEEECCCCeeeec-cc---cccc-----
Confidence 77777776665421 1123566666666655542 11 1122
Q ss_pred EccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECcc
Q 037514 316 YLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSN 395 (636)
Q Consensus 316 ~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~ 395 (636)
+|++|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+ ++|++|++++
T Consensus 227 ---------------------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~ 281 (390)
T 3o6n_A 227 ---------------------ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM--QRLERLYISN 281 (390)
T ss_dssp ---------------------SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC--SSCCEEECCS
T ss_pred ---------------------cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc--ccCCEEECCC
Confidence 344444444444432 344555555555555555555555554444 4555555555
Q ss_pred CcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCC
Q 037514 396 NKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT 471 (636)
Q Consensus 396 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 471 (636)
|++++. +..+..+++|++|++++|++. .+|..+..+++|++|++++|.++... +..+++|+.|++++|++.
T Consensus 282 n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 282 NRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp SCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred CcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCcc
Confidence 555432 223344455555555555544 23333444455555555555554432 334445555555555444
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.9e-32 Score=278.18 Aligned_cols=307 Identities=24% Similarity=0.332 Sum_probs=184.0
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCCh
Q 037514 74 VYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNW 153 (636)
Q Consensus 74 ~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 153 (636)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++++. +.++++|++|++++|.++.+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~-----------~~~l~~L~~L~L~~n~i~~~--- 103 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP-----------LSNLVKLTNLYIGTNKITDI--- 103 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-----------GTTCTTCCEEECCSSCCCCC---
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh-----------hhcCCcCCEEEccCCcccCc---
Confidence 4466788999999988874 44 48888999999999888877653 77788888888888887775
Q ss_pred hhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCC
Q 037514 154 LQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKM 233 (636)
Q Consensus 154 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l 233 (636)
..+.++++|++|++++|.+....+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+. + ++..+
T Consensus 104 -~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~--~~~~l 176 (347)
T 4fmz_A 104 -SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV-T--PIANL 176 (347)
T ss_dssp -GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC-G--GGGGC
T ss_pred -hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc-h--hhccC
Confidence 257778888888888887775433 6777777777777775554333 367777777777777776632 2 15566
Q ss_pred CCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCC
Q 037514 234 CNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLN 313 (636)
Q Consensus 234 ~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~ 313 (636)
++|++|++++|.+.+..+ +..+++|+.+++++|.+.+. + .+..+++|+
T Consensus 177 ~~L~~L~l~~n~l~~~~~-----------------------------~~~l~~L~~L~l~~n~l~~~-~--~~~~~~~L~ 224 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISP-----------------------------LASLTSLHYFTAYVNQITDI-T--PVANMTRLN 224 (347)
T ss_dssp TTCSEEECTTSCCCCCGG-----------------------------GGGCTTCCEEECCSSCCCCC-G--GGGGCTTCC
T ss_pred CCCCEEEccCCccccccc-----------------------------ccCCCccceeecccCCCCCC-c--hhhcCCcCC
Confidence 666666666666543211 23344566666666655542 1 144445555
Q ss_pred EEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEEC
Q 037514 314 SLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDL 393 (636)
Q Consensus 314 ~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l 393 (636)
+|++++| .+.+..+ +..+ ++|++|++
T Consensus 225 ~L~l~~n--------------------------~l~~~~~--~~~l--------------------------~~L~~L~l 250 (347)
T 4fmz_A 225 SLKIGNN--------------------------KITDLSP--LANL--------------------------SQLTWLEI 250 (347)
T ss_dssp EEECCSS--------------------------CCCCCGG--GTTC--------------------------TTCCEEEC
T ss_pred EEEccCC--------------------------ccCCCcc--hhcC--------------------------CCCCEEEC
Confidence 5554444 2221111 3333 44444444
Q ss_pred ccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCc
Q 037514 394 SNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGE 473 (636)
Q Consensus 394 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 473 (636)
++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 251 ~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 251 GTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred CCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 44444332 2344555555555555555432 2355556666666666666655555566666666666666666544
Q ss_pred hhhhHHhhhcCCCCcccEEEcccCcCC
Q 037514 474 IKELTNAFSACNVSTLETLDLASNKLG 500 (636)
Q Consensus 474 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 500 (636)
.| +. .+++|++|++++|+++
T Consensus 327 ~~--~~-----~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 327 RP--LA-----SLSKMDSADFANQVIK 346 (347)
T ss_dssp GG--GG-----GCTTCSEESSSCC---
T ss_pred cC--hh-----hhhccceeehhhhccc
Confidence 44 11 1245566666666554
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.5e-32 Score=281.26 Aligned_cols=321 Identities=20% Similarity=0.177 Sum_probs=187.2
Q ss_pred CCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEE
Q 037514 160 LPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRL 239 (636)
Q Consensus 160 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L 239 (636)
++++++|++++|.+....+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+.+. +...++++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEE
Confidence 45666666666666555444456666666666666666655555566666666666666665532 22234555555555
Q ss_pred EcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccC
Q 037514 240 DLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSS 319 (636)
Q Consensus 240 ~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~ 319 (636)
++++|.+....+. .+..+++|++|++++|.+.+. +...+..+++|++|++++
T Consensus 123 ~L~~n~l~~l~~~---------------------------~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 123 VLERNDLSSLPRG---------------------------IFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSS 174 (390)
T ss_dssp ECCSSCCCCCCTT---------------------------TTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCEEECCS
T ss_pred ECCCCccCcCCHH---------------------------HhcCCCCCcEEECCCCccCcc-ChhhccCCCCCCEEECCC
Confidence 5555554421111 122333455555555554442 222344444444444443
Q ss_pred CCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCC
Q 037514 320 SNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFF 399 (636)
Q Consensus 320 n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 399 (636)
| .+++.... .+ ++|++|++++|.++
T Consensus 175 n--------------------------------------------------~l~~~~~~---~l--~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 175 N--------------------------------------------------RLTHVDLS---LI--PSLFHANVSYNLLS 199 (390)
T ss_dssp S--------------------------------------------------CCSBCCGG---GC--TTCSEEECCSSCCS
T ss_pred C--------------------------------------------------cCCccccc---cc--cccceeeccccccc
Confidence 3 33322111 11 45666666666554
Q ss_pred ccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHH
Q 037514 400 GGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTN 479 (636)
Q Consensus 400 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 479 (636)
+. ...++|++|++++|.+... +.. ..++|++|++++|.+++. ..+..+++|++|++++|++++..|..+.
T Consensus 200 ~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 TL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp EE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 32 2234666677776666533 221 235677777777777664 2466777777777777777766555443
Q ss_pred hhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCC
Q 037514 480 AFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLS 559 (636)
Q Consensus 480 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 559 (636)
. +++|++|++++|+++ .++..+..+++|+.|++++|++. .+|..+..+++|++|++++|+++... +..++
T Consensus 270 ~-----l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~ 339 (390)
T 3o6n_A 270 K-----MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHH 339 (390)
T ss_dssp T-----CSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTC
T ss_pred c-----cccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhc
Confidence 2 356677777777776 34555667788888888888877 56666777888888888888887652 56778
Q ss_pred CCCEEECcCCcceeecChhhhcCCC
Q 037514 560 EPYMLDLYGNSWEGVITEKHFRNLS 584 (636)
Q Consensus 560 ~L~~L~L~~n~l~~~~~~~~~~~l~ 584 (636)
+|+.|++++|++.+......+..+.
T Consensus 340 ~L~~L~l~~N~~~~~~~~~~~~~~~ 364 (390)
T 3o6n_A 340 TLKNLTLSHNDWDCNSLRALFRNVA 364 (390)
T ss_dssp CCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred cCCEEEcCCCCccchhHHHHHHHHH
Confidence 8888888888887654444444433
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.3e-31 Score=271.57 Aligned_cols=82 Identities=28% Similarity=0.333 Sum_probs=43.3
Q ss_pred CcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEEC
Q 037514 487 STLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDL 566 (636)
Q Consensus 487 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 566 (636)
++|++|++++|++++. ..+..+++|+.|++++|++.+..|..+..+++|++|++++|++++..| +..+++|++|++
T Consensus 265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 4445555555554432 234555555555555555555555555555566666666665555444 555566666666
Q ss_pred cCCcce
Q 037514 567 YGNSWE 572 (636)
Q Consensus 567 ~~n~l~ 572 (636)
++|+++
T Consensus 341 ~~N~i~ 346 (347)
T 4fmz_A 341 ANQVIK 346 (347)
T ss_dssp SCC---
T ss_pred hhhccc
Confidence 665543
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.6e-32 Score=296.52 Aligned_cols=311 Identities=19% Similarity=0.218 Sum_probs=216.1
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhh
Q 037514 76 SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQ 155 (636)
Q Consensus 76 ~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 155 (636)
.+++++.+++++|.+....+..|.++++|++|++++|.++++++.. +.++++|++|++++|.++..+. .
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~l~~L~~L~L~~n~l~~~~~--~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA---------FAYAHTIQKLYMGFNAIRYLPP--H 117 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT---------TTTCTTCCEEECCSSCCCCCCT--T
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHH---------hcCCCCCCEEECCCCcCCCCCH--H
Confidence 3578899999999988766666888999999999999988876532 7888888888888888888743 5
Q ss_pred hhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCC
Q 037514 156 VVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCN 235 (636)
Q Consensus 156 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~ 235 (636)
.|+++++|++|+|++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+.+ .+++.+++
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~l~~ 193 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH----VDLSLIPS 193 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB----CCGGGCTT
T ss_pred HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC----cChhhhhh
Confidence 67888888888888888887777777888888888888888888777778888888888888887774 34566777
Q ss_pred CCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEE
Q 037514 236 LRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSL 315 (636)
Q Consensus 236 L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L 315 (636)
|++|++++|.+.+. ....+|+.|++++|.+....+. ..+
T Consensus 194 L~~L~l~~n~l~~l--------------------------------~~~~~L~~L~ls~n~l~~~~~~----~~~----- 232 (597)
T 3oja_B 194 LFHANVSYNLLSTL--------------------------------AIPIAVEELDASHNSINVVRGP----VNV----- 232 (597)
T ss_dssp CSEEECCSSCCSEE--------------------------------ECCTTCSEEECCSSCCCEEECS----CCS-----
T ss_pred hhhhhcccCccccc--------------------------------cCCchhheeeccCCcccccccc----cCC-----
Confidence 77777777765531 1123566666666666542111 112
Q ss_pred EccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECcc
Q 037514 316 YLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSN 395 (636)
Q Consensus 316 ~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~ 395 (636)
+|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..+..+ ++|++|++++
T Consensus 233 ---------------------~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~Ls~ 287 (597)
T 3oja_B 233 ---------------------ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM--QRLERLYISN 287 (597)
T ss_dssp ---------------------CCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC--SSCCEEECTT
T ss_pred ---------------------CCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc--cCCCEEECCC
Confidence 44445555555543 3556666777777777777776666666666 6677777777
Q ss_pred CcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCC
Q 037514 396 NKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG 472 (636)
Q Consensus 396 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 472 (636)
|.+++. |..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+.+ +..+++|+.|++++|++.+
T Consensus 288 N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 288 NRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 766553 444555667777777777766 45555566667777777777766553 4456667777777776654
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=3e-31 Score=290.07 Aligned_cols=321 Identities=20% Similarity=0.185 Sum_probs=198.2
Q ss_pred CCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEE
Q 037514 160 LPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRL 239 (636)
Q Consensus 160 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L 239 (636)
+.+++.+++++|.+....+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+.+ +|...++++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEE
Confidence 4566777777777666655556667777777777777766556666677777777777776664 332235666666666
Q ss_pred EcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccC
Q 037514 240 DLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSS 319 (636)
Q Consensus 240 ~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~ 319 (636)
++++|.+.+..+. .++.+++|++|++++|.+.+..+ ..|..+++|+.|++++
T Consensus 129 ~L~~n~l~~l~~~---------------------------~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~ 180 (597)
T 3oja_B 129 VLERNDLSSLPRG---------------------------IFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSS 180 (597)
T ss_dssp ECCSSCCCCCCTT---------------------------TTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTT
T ss_pred EeeCCCCCCCCHH---------------------------HhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcC
Confidence 6666655532221 12334455555555555554322 2445555555554444
Q ss_pred CCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCC
Q 037514 320 SNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFF 399 (636)
Q Consensus 320 n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 399 (636)
| .+++..... + ++|+.|++++|.++
T Consensus 181 N--------------------------------------------------~l~~~~~~~---l--~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 181 N--------------------------------------------------RLTHVDLSL---I--PSLFHANVSYNLLS 205 (597)
T ss_dssp S--------------------------------------------------CCSBCCGGG---C--TTCSEEECCSSCCS
T ss_pred C--------------------------------------------------CCCCcChhh---h--hhhhhhhcccCccc
Confidence 4 333222111 1 45555666655554
Q ss_pred ccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHH
Q 037514 400 GGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTN 479 (636)
Q Consensus 400 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 479 (636)
+. ...++|+.|++++|.+....+. + .++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+.
T Consensus 206 ~l-----~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 TL-----AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp EE-----ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cc-----cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 32 2334566666666666533222 1 24677777777777664 3466777777777777777766665554
Q ss_pred hhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCC
Q 037514 480 AFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLS 559 (636)
Q Consensus 480 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 559 (636)
. +++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+. .+|..+..+++|++|++++|.+++.. +..++
T Consensus 276 ~-----l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~ 345 (597)
T 3oja_B 276 K-----MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHH 345 (597)
T ss_dssp T-----CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTC
T ss_pred C-----ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcC
Confidence 2 3566777777777774 4556667788888888888887 56777778888888888888887653 56678
Q ss_pred CCCEEECcCCcceeecChhhhcCCC
Q 037514 560 EPYMLDLYGNSWEGVITEKHFRNLS 584 (636)
Q Consensus 560 ~L~~L~L~~n~l~~~~~~~~~~~l~ 584 (636)
+|+.|++++|++.+......+..+.
T Consensus 346 ~L~~L~l~~N~~~~~~~~~~~~~~~ 370 (597)
T 3oja_B 346 TLKNLTLSHNDWDCNSLRALFRNVA 370 (597)
T ss_dssp CCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred CCCEEEeeCCCCCChhHHHHHHHHh
Confidence 8888888888887765555444443
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.5e-32 Score=273.47 Aligned_cols=285 Identities=21% Similarity=0.316 Sum_probs=182.6
Q ss_pred ccCHHhHHHHHhcc-CCCCCCCCCCCCCcccC--c--ccc---C----CCCCCEEeCCCCCCCC--CCCccccCCCCCCE
Q 037514 41 RCTEREREALLKFK-GLIDPSARLSSWKSPIP--E--FVY---S----LKKLKLLDLSESSFSG--MLPPNIGNLSNLQY 106 (636)
Q Consensus 41 ~c~~~~~~~l~~~~-~l~~~~~~~~~w~~~~p--~--~~~---~----l~~L~~L~Ls~~~i~~--~~~~~l~~l~~L~~ 106 (636)
.|.++|+.|+++|| ++.++. .+.+|...-+ . |-+ . ..+|++|+|++|.+++ .+|..|+++++|++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 69999999999999 886655 6778853211 1 111 1 1578899999999988 78888999999999
Q ss_pred EeCcC-CCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCC
Q 037514 107 LDLSY-QNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFT 185 (636)
Q Consensus 107 L~Ls~-n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 185 (636)
|++++ |.+.+..+.. +.++++|++|++++|.+++. ++..+.++++|++|++++|.+.+..|..+.+++
T Consensus 81 L~L~~~n~l~~~~p~~---------l~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPA---------IAKLTQLHYLYITHTNVSGA--IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp EEEEEETTEESCCCGG---------GGGCTTCSEEEEEEECCEEE--CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred eeCCCCCcccccCChh---------HhcCCCCCEEECcCCeeCCc--CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 99984 7776533221 66667777777777776643 224566666677777777666666666666666
Q ss_pred CCCEEEccCCcCCcCCCccccCCC-CCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCccc
Q 037514 186 SLSILELSYDNFNSQIPQWLFNIS-TLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNST 264 (636)
Q Consensus 186 ~L~~L~L~~n~~~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~ 264 (636)
+|++|++++|.+++.+|..+..++ +|++|++++|++.+.+|. .+..++ |++|++++|.+.+..+.
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~Ls~N~l~~~~~~------------ 215 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LAFVDLSRNMLEGDASV------------ 215 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC-CSEEECCSSEEEECCGG------------
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc-ccEEECcCCcccCcCCH------------
Confidence 666666666666665666666665 666666666666655443 244444 66666666655543332
Q ss_pred chhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEcc
Q 037514 265 LETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAIN 344 (636)
Q Consensus 265 L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~ 344 (636)
.+..+++|+.|++++|++.+.++. +..+++|++ |+++
T Consensus 216 ---------------~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~--------------------------L~Ls 252 (313)
T 1ogq_A 216 ---------------LFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNG--------------------------LDLR 252 (313)
T ss_dssp ---------------GCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCE--------------------------EECC
T ss_pred ---------------HHhcCCCCCEEECCCCceeeecCc--ccccCCCCE--------------------------EECc
Confidence 233344566666666665543332 444444444 4444
Q ss_pred CCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCc
Q 037514 345 DCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK 397 (636)
Q Consensus 345 ~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~ 397 (636)
+|.+.+.+|..+..+++|++|++++|++++.+|.. ..+ ++|+.+++++|.
T Consensus 253 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l--~~L~~l~l~~N~ 302 (313)
T 1ogq_A 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL--QRFDVSAYANNK 302 (313)
T ss_dssp SSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG--GGSCGGGTCSSS
T ss_pred CCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc--cccChHHhcCCC
Confidence 55566666666777777777777777777666654 333 667777777775
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.5e-34 Score=302.92 Aligned_cols=391 Identities=19% Similarity=0.141 Sum_probs=230.4
Q ss_pred CCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCC----CCCcCccCCCCCCEEEccCCcCCcCCCcccc-CCC
Q 037514 135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNF----PQSLPFLNFTSLSILELSYDNFNSQIPQWLF-NIS 209 (636)
Q Consensus 135 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~-~l~ 209 (636)
++|++|++++|+++..+ +...+..+++|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHH-HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchh-HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 45677777777776553 33346667777777777777653 2234455666777777777666553333332 233
Q ss_pred ----CCCEEeCcCCcCCC----CCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccc
Q 037514 210 ----TLVTLNLRSSQLSG----SIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENI 281 (636)
Q Consensus 210 ----~L~~L~L~~n~l~~----~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l 281 (636)
+|++|++++|++.. .++. .+..+++|++|++++|.+.+..+..+...- .
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l----------------------~ 138 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGL----------------------L 138 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHHHH----------------------T
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHHHH----------------------h
Confidence 46666666665542 1111 144555555555555554433222211100 0
Q ss_pred cCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCC
Q 037514 282 GQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQAS 361 (636)
Q Consensus 282 ~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 361 (636)
...++|++|++++|++++.... .++..+..+++
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~-----------------------------------------------~l~~~l~~~~~ 171 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCE-----------------------------------------------PLASVLRAKPD 171 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHH-----------------------------------------------HHHHHHHHCTT
T ss_pred cCCCcceEEECCCCCCCHHHHH-----------------------------------------------HHHHHHhhCCC
Confidence 1122444455544444432100 12333444455
Q ss_pred cceeccccccCCCcchhhHHhhc---CCCccEEECccCcCCcc----CCcccCCCCCCcEEEccCCcCCccc-----CCC
Q 037514 362 VFKLTLSNAAISDTIPDWFWGVI---SQKLSVIDLSNNKFFGG----ILSSLCSLPSLYWLRLGGNNLSGEL-----STS 429 (636)
Q Consensus 362 L~~L~L~~n~~~~~~~~~~~~~~---~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~ 429 (636)
|++|++++|.+.+..+..+.... .++|++|++++|.+++. ++..+..+++|++|++++|.+.+.. +..
T Consensus 172 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~ 251 (461)
T 1z7x_W 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL 251 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHH
Confidence 55555555555444333332210 04666777777666543 3444556677777777777665321 222
Q ss_pred CCCCCCCCEEECCCCCCCCC----cchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCC---
Q 037514 430 LPDCSRLTALDIGGNRFLQL----PSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGN--- 502 (636)
Q Consensus 430 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--- 502 (636)
+..+++|++|++++|.++.. .+..+..+++|++|++++|++.+..+..+........++|++|++++|.+++.
T Consensus 252 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 331 (461)
T 1z7x_W 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHH
Confidence 33567888888888887764 34456668888888888888876555555544333345788888888888754
Q ss_pred -CchhhcCCCCCCEEeCcCCccCCccChhhhC-----CCCCCeEeCcCccccc----cccccccCCCCCCEEECcCCcce
Q 037514 503 -LPDSLGNLLCLEYLGLSENSFLGSLPTSIGN-----LSHLRALYLSFNVMSR----IISENIGQLSEPYMLDLYGNSWE 572 (636)
Q Consensus 503 -~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~-----l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~ 572 (636)
++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++ .++..+..+++|++|++++|++.
T Consensus 332 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 4566777888889999888887655554442 6788899999888886 56777888888999999988876
Q ss_pred eecChhh---h-cCCCCCCeeeCCCCCC
Q 037514 573 GVITEKH---F-RNLSGLDYLTISSSNS 596 (636)
Q Consensus 573 ~~~~~~~---~-~~l~~L~~L~ls~n~~ 596 (636)
+...... + ....+|+.|++.++..
T Consensus 412 ~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 412 DAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred HHHHHHHHHHhccCCcchhheeeccccc
Confidence 5322211 1 2345688888877744
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=8.9e-32 Score=269.51 Aligned_cols=249 Identities=23% Similarity=0.289 Sum_probs=229.6
Q ss_pred CCccEEEccCCCCCc--CCChhhcCCCCcceecccc-ccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCC
Q 037514 336 FSLRQMAINDCQLGS--AFPSWLKTQASVFKLTLSN-AAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSL 412 (636)
Q Consensus 336 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~-n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 412 (636)
.++++|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+ ++|++|++++|.+++..|..+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL--TQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC--TTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcC--CCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 468888888889988 8899999999999999995 99999999999888 999999999999998999999999999
Q ss_pred cEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCC-CCCeEeCcCCcCCCchhhhHHhhhcCCCCcccE
Q 037514 413 YWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLC-NLHSLDISYNHITGEIKELTNAFSACNVSTLET 491 (636)
Q Consensus 413 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~ 491 (636)
++|++++|.+.+.+|..+..+++|++|++++|.+++..|..+..++ +|++|++++|++++.+|..+..+ + |++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-----~-L~~ 201 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-----N-LAF 201 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-----C-CSE
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-----c-ccE
Confidence 9999999999988999999999999999999999987788898988 99999999999998888776643 2 799
Q ss_pred EEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcc
Q 037514 492 LDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSW 571 (636)
Q Consensus 492 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 571 (636)
|++++|++++..|..+..+++|+.|++++|.+.+.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|++
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 99999999989999999999999999999999977776 88899999999999999999999999999999999999999
Q ss_pred eeecChhhhcCCCCCCeeeCCCCC
Q 037514 572 EGVITEKHFRNLSGLDYLTISSSN 595 (636)
Q Consensus 572 ~~~~~~~~~~~l~~L~~L~ls~n~ 595 (636)
++.+|+. ..+++|+.+++++|+
T Consensus 281 ~~~ip~~--~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 281 CGEIPQG--GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEECCCS--TTGGGSCGGGTCSSS
T ss_pred cccCCCC--ccccccChHHhcCCC
Confidence 9999985 788999999999994
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.5e-34 Score=302.92 Aligned_cols=393 Identities=19% Similarity=0.169 Sum_probs=227.9
Q ss_pred CCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCC--CChhhhhCCCCCCCEEEccCCcCCCCCC
Q 037514 101 LSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKV--TNWLQVVNELPSLVELHLSNCQLNFPQS 178 (636)
Q Consensus 101 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 178 (636)
.++|++||+++|++++..... .+..+++|++|++++|.++.. ..++..+..+++|++|++++|.+....+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~--------~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 73 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAE--------LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV 73 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHH--------HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred CccceehhhhhcccCchhHHH--------HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH
Confidence 357899999999988754321 156789999999999998854 2345678889999999999999865333
Q ss_pred cCc-cCCC----CCCEEEccCCcCCc----CCCccccCCCCCCEEeCcCCcCCCCCCC----CCCCCCCCCCEEEccccc
Q 037514 179 LPF-LNFT----SLSILELSYDNFNS----QIPQWLFNISTLVTLNLRSSQLSGSIPK----FPPGKMCNLRRLDLAING 245 (636)
Q Consensus 179 ~~~-~~l~----~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~~l~~L~~L~L~~n~ 245 (636)
..+ ..++ +|++|++++|.++. .++..+..+++|++|++++|.+.+..+. ......++|++|++++|.
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 222 3344 79999999999984 4588899999999999999998742111 003346789999999999
Q ss_pred CccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhc-----CCCCCCEEEccCC
Q 037514 246 FSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQ-----NLTKLNSLYLSSS 320 (636)
Q Consensus 246 ~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~-----~l~~L~~L~L~~n 320 (636)
+++..... ++..+..+++|++|++++|.+.+.... .+. ..++|++|++++|
T Consensus 154 l~~~~~~~-----------------------l~~~l~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 154 LSAASCEP-----------------------LASVLRAKPDFKELTVSNNDINEAGVR-VLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp CBGGGHHH-----------------------HHHHHHHCTTCCEEECCSSBCHHHHHH-HHHHHHHHSCCCCCEEECTTS
T ss_pred CCHHHHHH-----------------------HHHHHhhCCCCCEEECcCCCcchHHHH-HHHHHHhcCCCCceEEEccCC
Confidence 88644322 223445567899999999988753222 222 2445555555554
Q ss_pred CCccEEecCCCCCCCCCccEEEccCCCCCcC----CChhhcCCCCcceeccccccCCCcchhhHHhhc---CCCccEEEC
Q 037514 321 NKSLVFTMRSDWIPPFSLRQMAINDCQLGSA----FPSWLKTQASVFKLTLSNAAISDTIPDWFWGVI---SQKLSVIDL 393 (636)
Q Consensus 321 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~---~~~L~~L~l 393 (636)
.+++. ++..+..+++|++|++++|.+.+.....+.... .++|++|++
T Consensus 210 --------------------------~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 210 --------------------------GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp --------------------------CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred --------------------------CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence 44332 355566667777777777766554322222100 045555555
Q ss_pred ccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhc-----CCCCCCeEeCcCC
Q 037514 394 SNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMG-----NLCNLHSLDISYN 468 (636)
Q Consensus 394 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n 468 (636)
++|.+++.... .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|
T Consensus 264 ~~n~l~~~~~~--------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 264 WECGITAKGCG--------------------DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp TTSCCCHHHHH--------------------HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred cCCCCCHHHHH--------------------HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 55555432100 0223333344444444444444332221111 1235555555555
Q ss_pred cCCCchhhhHH-hhhcCCCCcccEEEcccCcCCCCCchhhcC-----CCCCCEEeCcCCccCC----ccChhhhCCCCCC
Q 037514 469 HITGEIKELTN-AFSACNVSTLETLDLASNKLGGNLPDSLGN-----LLCLEYLGLSENSFLG----SLPTSIGNLSHLR 538 (636)
Q Consensus 469 ~l~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~Ls~n~~~~----~~p~~l~~l~~L~ 538 (636)
.+++.....+. .+.. +++|++|++++|++++..+..+.. .++|++|++++|.+.+ .+|..+..+++|+
T Consensus 324 ~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQ--NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp CCBGGGHHHHHHHHHH--CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCchHHHHHHHHHHhh--CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 55433221111 1111 144455555555554332222221 4566666666666554 4555566666666
Q ss_pred eEeCcCccccccccccc-----cCCCCCCEEECcCCccee
Q 037514 539 ALYLSFNVMSRIISENI-----GQLSEPYMLDLYGNSWEG 573 (636)
Q Consensus 539 ~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~ 573 (636)
+|++++|++++.....+ .....|+.|++.++.+..
T Consensus 402 ~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred EEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 66666666654321111 123456666666665543
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=8.5e-29 Score=250.41 Aligned_cols=245 Identities=22% Similarity=0.250 Sum_probs=125.8
Q ss_pred CCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEe
Q 037514 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLN 215 (636)
Q Consensus 136 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 215 (636)
++++++++++.++.+|. .+ .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~---~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK---DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCSCCC---SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccccCc---cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 34444444444444432 11 24566666666666665555666666666666666666665566666666666666
Q ss_pred CcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCC
Q 037514 216 LRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRN 295 (636)
Q Consensus 216 L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n 295 (636)
+++|+++ .+|.. -.++|++|++++|.+.+..+.. +..+++|++|++++|
T Consensus 107 Ls~n~l~-~l~~~---~~~~L~~L~l~~n~l~~~~~~~---------------------------~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 107 LSKNQLK-ELPEK---MPKTLQELRVHENEITKVRKSV---------------------------FNGLNQMIVVELGTN 155 (330)
T ss_dssp CCSSCCS-BCCSS---CCTTCCEEECCSSCCCBBCHHH---------------------------HTTCTTCCEEECCSS
T ss_pred CCCCcCC-ccChh---hcccccEEECCCCcccccCHhH---------------------------hcCCccccEEECCCC
Confidence 6666665 43321 2256666666666655433322 333446666666666
Q ss_pred cCcc-ccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCC
Q 037514 296 SWKG-IITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISD 374 (636)
Q Consensus 296 ~~~~-~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~ 374 (636)
.+.. .+....+..+++|++|++++|.+.. ++..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 156 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~---l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 156 PLKSSGIENGAFQGMKKLSYIRIADTNITT---IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp CCCGGGBCTTGGGGCTTCCEEECCSSCCCS---CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred cCCccCcChhhccCCCCcCEEECCCCcccc---CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 6642 1222356666666666666663211 111111 344455555555554444555555555555555555544
Q ss_pred cchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCc
Q 037514 375 TIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSG 424 (636)
Q Consensus 375 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 424 (636)
..+.++..+ ++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 231 ~~~~~~~~l--~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 231 VDNGSLANT--PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp ECTTTGGGS--TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred eChhhccCC--CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 444444443 44444444444443 233334444444444444444443
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.6e-29 Score=254.20 Aligned_cols=289 Identities=17% Similarity=0.180 Sum_probs=212.8
Q ss_pred CCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCccee
Q 037514 286 ELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKL 365 (636)
Q Consensus 286 ~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 365 (636)
+++.++++++.+.. +|. .+ .++++.|++++| .+....+..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 32 ~l~~l~~~~~~l~~-lp~-~~--~~~l~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPK-DL--PPDTALLDLQNN--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCCS-CCC-SC--CTTCCEEECCSS--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCccc-cCc-cC--CCCCeEEECCCC--cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 56677777776664 443 12 256777777777 3344444456666777777777777777777788888888888
Q ss_pred ccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCc--ccCCCCCCCCCCCEEECCC
Q 037514 366 TLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSG--ELSTSLPDCSRLTALDIGG 443 (636)
Q Consensus 366 ~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~ 443 (636)
++++|.++......+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+.++++|++|++++
T Consensus 106 ~Ls~n~l~~l~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 106 YLSKNQLKELPEKMP-----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp ECCSSCCSBCCSSCC-----TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred ECCCCcCCccChhhc-----ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 888888774433222 578888888888877777778888888888888888753 5567778888888888888
Q ss_pred CCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCcc
Q 037514 444 NRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSF 523 (636)
Q Consensus 444 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~ 523 (636)
|.++.++... .++|++|++++|++++..+..+.. +++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 181 n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 181 TNITTIPQGL---PPSLTELHLDGNKITKVDAASLKG-----LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp SCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTT-----CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred CccccCCccc---cccCCEEECCCCcCCccCHHHhcC-----CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 8888765432 278888888888888766655542 36678888888888877777788888889999998888
Q ss_pred CCccChhhhCCCCCCeEeCcCccccccccccccC------CCCCCEEECcCCccee-ecChhhhcCCCCCCeeeCCCC
Q 037514 524 LGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQ------LSEPYMLDLYGNSWEG-VITEKHFRNLSGLDYLTISSS 594 (636)
Q Consensus 524 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~ls~n 594 (636)
. .+|..+..+++|++|++++|++++..+..|.. .+.++.+++++|++.. .++...|..+.+++.+++++|
T Consensus 253 ~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp S-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred c-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 7 67778888888899999988888877766643 3778889999998752 355567888888999998887
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.6e-29 Score=255.85 Aligned_cols=289 Identities=17% Similarity=0.192 Sum_probs=237.0
Q ss_pred CCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCccee
Q 037514 286 ELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKL 365 (636)
Q Consensus 286 ~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 365 (636)
+++.++++++.+.. +|.. + .++++.|++++| ......+..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 34 ~l~~l~~~~~~l~~-ip~~-~--~~~l~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKE-I--SPDTTLLDLQNN--DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCSS-CCSC-C--CTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCCccc-cCCC-C--CCCCeEEECCCC--cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 68889999988875 6652 2 368899999998 5555666678888899999999999988888899999999999
Q ss_pred ccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCc--ccCCCCCCCCCCCEEECCC
Q 037514 366 TLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSG--ELSTSLPDCSRLTALDIGG 443 (636)
Q Consensus 366 ~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~ 443 (636)
++++|.+....+..+ ++|++|++++|++.+..+..+..+++|++|++++|.++. ..+..+..+ +|++|++++
T Consensus 108 ~L~~n~l~~l~~~~~-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP-----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp ECCSSCCCSCCSSCC-----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred ECCCCcCCccCcccc-----ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 999999885444332 689999999999988777788999999999999999863 567777777 999999999
Q ss_pred CCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCcc
Q 037514 444 NRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSF 523 (636)
Q Consensus 444 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~ 523 (636)
|.+++++.. + .++|++|++++|++++..+..+.. +++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 182 n~l~~l~~~-~--~~~L~~L~l~~n~i~~~~~~~l~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 182 AKLTGIPKD-L--PETLNELHLDHNKIQAIELEDLLR-----YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp SBCSSCCSS-S--CSSCSCCBCCSSCCCCCCTTSSTT-----CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCccCcc-c--cCCCCEEECCCCcCCccCHHHhcC-----CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence 999886653 2 278999999999998776665543 36779999999999987777899999999999999999
Q ss_pred CCccChhhhCCCCCCeEeCcCccccccccccccC------CCCCCEEECcCCccee-ecChhhhcCCCCCCeeeCCCCC
Q 037514 524 LGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQ------LSEPYMLDLYGNSWEG-VITEKHFRNLSGLDYLTISSSN 595 (636)
Q Consensus 524 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~ls~n~ 595 (636)
. .+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|++.. .++...|..+++|+.+++++|.
T Consensus 254 ~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 254 S-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp C-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred e-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 8 78888999999999999999999887777765 3678999999998762 3566779999999999999883
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.8e-29 Score=251.30 Aligned_cols=290 Identities=18% Similarity=0.201 Sum_probs=158.0
Q ss_pred CCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCcc
Q 037514 103 NLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFL 182 (636)
Q Consensus 103 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 182 (636)
+++.++++++.++.++.. + .++|++|++++|.++.++. ..|.++++|++|++++|.+++..+..|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~----------~--~~~l~~L~l~~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 99 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKE----------I--SPDTTLLDLQNNDISELRK--DDFKGLQHLYALVLVNNKISKIHEKAFS 99 (332)
T ss_dssp ETTEEECCSSCCSSCCSC----------C--CTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEECGGGST
T ss_pred cCCEEECCCCCccccCCC----------C--CCCCeEEECCCCcCCccCH--hHhhCCCCCcEEECCCCccCccCHhHhh
Confidence 467777777766655432 2 2455666666665555421 3455555555555555555555555555
Q ss_pred CCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCc
Q 037514 183 NFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNN 262 (636)
Q Consensus 183 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~ 262 (636)
++++|++|++++|.++. +|..+. ++|++|++++|++. .+|...+.++++|++|++++|.+...
T Consensus 100 ~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~------------- 162 (332)
T 2ft3_A 100 PLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENS------------- 162 (332)
T ss_dssp TCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGG-------------
T ss_pred CcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccC-------------
Confidence 55555555555555553 333332 45555555555554 33322244555555555555544310
Q ss_pred ccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEE
Q 037514 263 STLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMA 342 (636)
Q Consensus 263 ~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ 342 (636)
+..+..+..+ +|++|++++|++++ +|. .+. .+|++|+
T Consensus 163 ------------~~~~~~~~~l-~L~~L~l~~n~l~~-l~~---------------------------~~~--~~L~~L~ 199 (332)
T 2ft3_A 163 ------------GFEPGAFDGL-KLNYLRISEAKLTG-IPK---------------------------DLP--ETLNELH 199 (332)
T ss_dssp ------------GSCTTSSCSC-CCSCCBCCSSBCSS-CCS---------------------------SSC--SSCSCCB
T ss_pred ------------CCCcccccCC-ccCEEECcCCCCCc-cCc---------------------------ccc--CCCCEEE
Confidence 0111222222 44445555544443 222 111 3455555
Q ss_pred ccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcC
Q 037514 343 INDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNL 422 (636)
Q Consensus 343 l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 422 (636)
+++|.+.+..+..+..+++|++|++++|.+.+..+.++..+ ++|++|++++|+++ .+|..+..+++|++|++++|++
T Consensus 200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL--PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC--TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC--CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 55556665556666777777777777777776666666665 67777777777765 4455566667777777777776
Q ss_pred CcccCCCCCC------CCCCCEEECCCCCCC--CCcchhhcCCCCCCeEeCcCCc
Q 037514 423 SGELSTSLPD------CSRLTALDIGGNRFL--QLPSTSMGNLCNLHSLDISYNH 469 (636)
Q Consensus 423 ~~~~~~~~~~------l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~ 469 (636)
++..+..+.. .+.|+.|++++|++. +..+..+..+++|+.+++++|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6554444443 245666666666665 4555556666666666666553
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=6.3e-31 Score=288.51 Aligned_cols=409 Identities=13% Similarity=0.084 Sum_probs=191.6
Q ss_pred CccccCCCCCCEEeCCCCCC---CCCCCcccc------------CCCCCCEEeCcCCCCCcccccccccccccccCCC-C
Q 037514 71 PEFVYSLKKLKLLDLSESSF---SGMLPPNIG------------NLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPD-L 134 (636)
Q Consensus 71 p~~~~~l~~L~~L~Ls~~~i---~~~~~~~l~------------~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~-l 134 (636)
+..+.++++|++|+++++.. .+.+|..++ ++++|++|+|++|.+++.... ++.. +
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~---------~l~~~~ 136 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD---------RLAKAR 136 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH---------HHHHHH
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHH---------HHHHhc
Confidence 34455777888888877532 123333333 567777777777766543221 1222 2
Q ss_pred C-CCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCC----CCcCccCCCCCCEEEccCCcCCc----CCCccc
Q 037514 135 S-SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFP----QSLPFLNFTSLSILELSYDNFNS----QIPQWL 205 (636)
Q Consensus 135 ~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~----~~p~~l 205 (636)
+ +|++|++++|.......+.....++++|++|+|++|.+.+. ++..+..+++|++|++++|.+++ .++..+
T Consensus 137 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 137 ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216 (592)
T ss_dssp GGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred cccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence 2 37777777665211111223334566777777777765443 12233455666666666666652 233334
Q ss_pred cCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCC
Q 037514 206 FNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLA 285 (636)
Q Consensus 206 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~ 285 (636)
.++++|++|++++|.+.+ +|. .+..+++|++|+++........ +..+..+..++
T Consensus 217 ~~~~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~~------------------------~~~~~~l~~~~ 270 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGSLNEDIGM------------------------PEKYMNLVFPR 270 (592)
T ss_dssp HHCTTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECBCCCCTTC------------------------TTSSSCCCCCT
T ss_pred hhCCCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccccccccch------------------------HHHHHHhhccc
Confidence 456666666666665553 221 1455566666666542111000 01222334445
Q ss_pred CCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCC-ChhhcCCCCcce
Q 037514 286 ELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAF-PSWLKTQASVFK 364 (636)
Q Consensus 286 ~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~ 364 (636)
+|+.++++++.... ++. .+..+++|++|++++| .+.+.. ...+..+++|++
T Consensus 271 ~L~~L~l~~~~~~~-l~~-~~~~~~~L~~L~Ls~~--------------------------~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 271 KLCRLGLSYMGPNE-MPI-LFPFAAQIRKLDLLYA--------------------------LLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TCCEEEETTCCTTT-GGG-GGGGGGGCCEEEETTC--------------------------CCCHHHHHHHHTTCTTCCE
T ss_pred cccccCccccchhH-HHH-HHhhcCCCcEEecCCC--------------------------cCCHHHHHHHHHhCcCCCE
Confidence 56666555532221 222 3444445555555444 332221 133456666666
Q ss_pred eccccccCCCc-chhhHHhhcCCCccEEECcc-----------CcCCccC-CcccCCCCCCcEEEccCCcCCcccCCCCC
Q 037514 365 LTLSNAAISDT-IPDWFWGVISQKLSVIDLSN-----------NKFFGGI-LSSLCSLPSLYWLRLGGNNLSGELSTSLP 431 (636)
Q Consensus 365 L~L~~n~~~~~-~~~~~~~~~~~~L~~L~ls~-----------n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 431 (636)
|+++ +.+.+. ++.....+ ++|++|++++ +.+++.. ......+++|++|++..+.+++..+..+.
T Consensus 323 L~L~-~~~~~~~l~~~~~~~--~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 323 LETR-NVIGDRGLEVLAQYC--KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp EEEE-GGGHHHHHHHHHHHC--TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred Eecc-CccCHHHHHHHHHhC--CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 6666 333222 22223333 5666666662 3333221 11122355566666655555443333333
Q ss_pred C-CCCCCEEECC----CCCCCCC-----cchhhcCCCCCCeEeCcCCc--CCCchhhhHHhhhcCCCCcccEEEcccCcC
Q 037514 432 D-CSRLTALDIG----GNRFLQL-----PSTSMGNLCNLHSLDISYNH--ITGEIKELTNAFSACNVSTLETLDLASNKL 499 (636)
Q Consensus 432 ~-l~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 499 (636)
. +++|++|+++ .|.+++. .+..+..+++|++|++++|. +++.....+.. .+++|++|++++|++
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~----~~~~L~~L~L~~n~l 475 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ----YSPNVRWMLLGYVGE 475 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH----SCTTCCEEEECSCCS
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH----hCccceEeeccCCCC
Confidence 2 4555555553 3344432 11223445555555554332 33222222211 124455555555554
Q ss_pred CCC-CchhhcCCCCCCEEeCcCCccCCc-cChhhhCCCCCCeEeCcCccccc
Q 037514 500 GGN-LPDSLGNLLCLEYLGLSENSFLGS-LPTSIGNLSHLRALYLSFNVMSR 549 (636)
Q Consensus 500 ~~~-~~~~l~~l~~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~Ls~n~l~~ 549 (636)
++. ++..+.++++|++|++++|.+++. ++..+..+++|++|++++|++++
T Consensus 476 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 476 SDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp SHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 431 223334455555555555554322 22223344555555555555443
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.3e-27 Score=249.70 Aligned_cols=237 Identities=23% Similarity=0.274 Sum_probs=168.4
Q ss_pred CCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEE
Q 037514 360 ASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTAL 439 (636)
Q Consensus 360 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 439 (636)
++++.|++++|++.+..+..|..+ ++|++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l--~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSC--SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCC--CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 456666677766666666666665 667777777777766666667777777777777777765555567777777777
Q ss_pred ECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhh-hHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeC
Q 037514 440 DIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKE-LTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGL 518 (636)
Q Consensus 440 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 518 (636)
++++|.+..+++..|..+++|++|++++|+..+.++. .+. .+++|++|++++|+++ .+| .+..+++|+.|+|
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-----~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~L 214 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE-----GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDL 214 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT-----TCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEEC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh-----cccccCeecCCCCcCc-ccc-ccCCCcccCEEEC
Confidence 7777777776666677777777777777443333332 222 2366677777777777 444 3677788888888
Q ss_pred cCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCc
Q 037514 519 SENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSL 598 (636)
Q Consensus 519 s~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~ 598 (636)
++|++.+..|..|.++++|++|++++|++++..+..|..+++|+.|+|++|+++ .+|...|..+++|+.|++++| +.
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N--p~ 291 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN--PW 291 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSS--CE
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCC--Cc
Confidence 888888777778888888888888888888877778888888888888888887 466667778888888888888 45
Q ss_pred cccccccccc
Q 037514 599 VFNIRHDWIA 608 (636)
Q Consensus 599 ~~~~~~~~~~ 608 (636)
.|+|...|+.
T Consensus 292 ~CdC~l~~l~ 301 (440)
T 3zyj_A 292 NCNCDILWLS 301 (440)
T ss_dssp ECSSTTHHHH
T ss_pred cCCCCchHHH
Confidence 5666666654
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.2e-27 Score=249.48 Aligned_cols=254 Identities=24% Similarity=0.240 Sum_probs=189.0
Q ss_pred EEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccC
Q 037514 340 QMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGG 419 (636)
Q Consensus 340 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~ 419 (636)
.++.++..+. .+|..+. +++++|++++|.+.+..+..|..+ ++|++|++++|.+++..+..|..+++|++|++++
T Consensus 58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHL--HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCC--CCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3444444443 2343332 567777777777777777777766 7788888888888777777778888888888888
Q ss_pred CcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhh-hHHhhhcCCCCcccEEEcccCc
Q 037514 420 NNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKE-LTNAFSACNVSTLETLDLASNK 498 (636)
Q Consensus 420 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~ 498 (636)
|++++..+..+..+++|++|++++|.++.+++..+..+++|++|++++|+..+.++. .+. .+++|++|++++|+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-----~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE-----GLFNLKYLNLGMCN 207 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT-----TCTTCCEEECTTSC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc-----CCCCCCEEECCCCc
Confidence 888766666677788888888888888877777788888888888887544333332 222 23677888888888
Q ss_pred CCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChh
Q 037514 499 LGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEK 578 (636)
Q Consensus 499 l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 578 (636)
+++ +| .+..+++|+.|+|++|.+.+..|..|.++++|++|++++|++++..+..|..+++|+.|++++|+++ .+|..
T Consensus 208 l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~ 284 (452)
T 3zyi_A 208 IKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHD 284 (452)
T ss_dssp CSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTT
T ss_pred ccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChH
Confidence 874 34 4777888888888888888877888888888888888888888888888888888888888888887 46777
Q ss_pred hhcCCCCCCeeeCCCCCCCccccccccccc
Q 037514 579 HFRNLSGLDYLTISSSNSSLVFNIRHDWIA 608 (636)
Q Consensus 579 ~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~ 608 (636)
.|..+++|+.|++++| +..|+|...|+.
T Consensus 285 ~~~~l~~L~~L~L~~N--p~~CdC~~~~l~ 312 (452)
T 3zyi_A 285 LFTPLRYLVELHLHHN--PWNCDCDILWLA 312 (452)
T ss_dssp SSTTCTTCCEEECCSS--CEECSTTTHHHH
T ss_pred HhccccCCCEEEccCC--CcCCCCCchHHH
Confidence 7888888888888888 555666666653
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.8e-27 Score=247.21 Aligned_cols=235 Identities=24% Similarity=0.286 Sum_probs=188.4
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514 69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS 148 (636)
Q Consensus 69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 148 (636)
.+|..+. +++++|+|++|++++..+..|.++++|++|+|++|.+++++... |.++++|++|++++|.++
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~---------~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA---------FNGLANLNTLELFDNRLT 125 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG---------GTTCSSCCEEECCSSCCS
T ss_pred cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh---------ccCCccCCEEECCCCcCC
Confidence 4666554 58999999999999888899999999999999999999877543 899999999999999999
Q ss_pred CCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCC-cCCcCCCccccCCCCCCEEeCcCCcCCCCCCC
Q 037514 149 KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD-NFNSQIPQWLFNISTLVTLNLRSSQLSGSIPK 227 (636)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 227 (636)
.++. ..|..+++|++|+|++|.+....+..|.++++|++|++++| .+....+..|.++++|++|++++|.++ .+|.
T Consensus 126 ~~~~--~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~ 202 (440)
T 3zyj_A 126 TIPN--GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN 202 (440)
T ss_dssp SCCT--TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC
T ss_pred eeCH--hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc
Confidence 8854 57899999999999999999888889999999999999995 555545557899999999999999998 6664
Q ss_pred CCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhc
Q 037514 228 FPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQ 307 (636)
Q Consensus 228 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~ 307 (636)
+..+++|++|++++|.+++..+..+.. +++|+.|++++|++.+..+ ..|.
T Consensus 203 --~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------l~~L~~L~L~~n~l~~~~~-~~~~ 252 (440)
T 3zyj_A 203 --LTPLIKLDELDLSGNHLSAIRPGSFQG---------------------------LMHLQKLWMIQSQIQVIER-NAFD 252 (440)
T ss_dssp --CTTCSSCCEEECTTSCCCEECTTTTTT---------------------------CTTCCEEECTTCCCCEECT-TSST
T ss_pred --cCCCcccCEEECCCCccCccChhhhcc---------------------------CccCCEEECCCCceeEECh-hhhc
Confidence 788999999999999998766655544 4466777777776666333 3666
Q ss_pred CCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCC
Q 037514 308 NLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLG 349 (636)
Q Consensus 308 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 349 (636)
.+++|+.|++++| .+.......+..+++|+.|++++|.+.
T Consensus 253 ~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 253 NLQSLVEINLAHN--NLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TCTTCCEEECTTS--CCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCC--CCCccChhHhccccCCCEEEcCCCCcc
Confidence 6777777777766 333334444556667777777776654
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.8e-27 Score=240.59 Aligned_cols=279 Identities=16% Similarity=0.185 Sum_probs=173.4
Q ss_pred CCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcc
Q 037514 284 LAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVF 363 (636)
Q Consensus 284 l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 363 (636)
++.....+.+++.++. +|.. + .++|++|++++| .........+..+++|++|++++|.+.+..+..+.++++|+
T Consensus 30 C~~~~~c~~~~~~l~~-iP~~-~--~~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS-IPSG-L--TEAVKSLDLSNN--RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp ECTTSEEECCSTTCSS-CCTT-C--CTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCeEeeCCCCCccc-cccc-c--cccCcEEECCCC--cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 3444557777777775 5552 2 247777787777 44444444566677777777777777776677777788888
Q ss_pred eeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCC-cccCCCCCCcEEEccCCc-CCcccCCCCCCCCCCCEEEC
Q 037514 364 KLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGIL-SSLCSLPSLYWLRLGGNN-LSGELSTSLPDCSRLTALDI 441 (636)
Q Consensus 364 ~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 441 (636)
+|++++|++++..+.++..+ ++|++|++++|++++... ..+..+++|++|++++|+ +.+..+..+.++++|++|++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPL--SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTC--TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCC--ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 88888888877666666666 778888888887765444 467777888888888773 55555667777778888888
Q ss_pred CCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhc---CCCCCCEEeC
Q 037514 442 GGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLG---NLLCLEYLGL 518 (636)
Q Consensus 442 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L 518 (636)
++|.+++..+..+..+++|++|++++|++.......+.. +++|++|++++|.+++..+..+. ....++.+++
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV-----TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH-----TTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh-----cccccEEECCCCccccccccccccccccchhhcccc
Confidence 888777776767777777777777777775333222221 25667777777777654433222 2344455555
Q ss_pred cCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCC
Q 037514 519 SENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNS 596 (636)
Q Consensus 519 s~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~ 596 (636)
+++.+.+. .+. .+|..+..+++|++|++++|+++ .+|...|..+++|++|++++|++
T Consensus 257 ~~~~l~~~-------------------~l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 257 RNVKITDE-------------------SLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp ESCBCCHH-------------------HHH-HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccccCc-------------------chh-hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCc
Confidence 55444321 000 13344445555555555555554 34554445555555555555533
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=7.5e-30 Score=279.97 Aligned_cols=434 Identities=15% Similarity=0.088 Sum_probs=261.6
Q ss_pred CCCCCCCCEEecCCccCCC----CC---------ChhhhhCCCCCCCEEEccCCcCCCCCCcCccC-CC-CCCEEEccCC
Q 037514 131 LPDLSSSRYLHLEGMKLSK----VT---------NWLQVVNELPSLVELHLSNCQLNFPQSLPFLN-FT-SLSILELSYD 195 (636)
Q Consensus 131 ~~~l~~L~~L~L~~n~l~~----~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~-~L~~L~L~~n 195 (636)
+..+++|++|+++++.... .+ .+......+++|++|+|++|.++...+..+.. ++ +|++|++++|
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence 4567789999997753211 01 01112236888899999888776544444444 33 4888888887
Q ss_pred c-CCc-CCCccccCCCCCCEEeCcCCcCCCCCCC-C--CCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhcc
Q 037514 196 N-FNS-QIPQWLFNISTLVTLNLRSSQLSGSIPK-F--PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLET 270 (636)
Q Consensus 196 ~-~~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~--~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~ 270 (636)
. ++. .++....++++|++|++++|.+.+.-.. + .+..+++|++|++++|.+.+.....
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~----------------- 211 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD----------------- 211 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHH-----------------
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHH-----------------
Confidence 6 221 1222334788888888888877643110 0 1346788888888888876432222
Q ss_pred CcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCcc-EEecCCCCCCCCCccEEEccCCCCC
Q 037514 271 QRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSL-VFTMRSDWIPPFSLRQMAINDCQLG 349 (636)
Q Consensus 271 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~ 349 (636)
++..+..+++|++|++++|.+.+ ++. .+..+++|++|+++...... .......+..+.+|+.+.+.++. .
T Consensus 212 ------l~~~~~~~~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~ 282 (592)
T 3ogk_B 212 ------LETIARNCRSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-P 282 (592)
T ss_dssp ------HHHHHHHCTTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-T
T ss_pred ------HHHHHhhCCCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-h
Confidence 22334567799999999998887 554 78899999999998542111 12233455666788888887753 3
Q ss_pred cCCChhhcCCCCcceeccccccCCCcchhh-HHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccC---------
Q 037514 350 SAFPSWLKTQASVFKLTLSNAAISDTIPDW-FWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGG--------- 419 (636)
Q Consensus 350 ~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~--------- 419 (636)
..+|..+..+++|++|++++|.+++..... +..+ ++|++|+++++...+.++.....+++|++|++++
T Consensus 283 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~--~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC--PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTC--TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhC--cCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccccc
Confidence 356667777788888888888765544322 3344 7788888873322222333334567788888873
Q ss_pred --CcCCcc-cCCCCCCCCCCCEEECCCCCCCCCcchhhcC-CCCCCeEeCc----CCcCCCchhh-hHH-hhhcCCCCcc
Q 037514 420 --NNLSGE-LSTSLPDCSRLTALDIGGNRFLQLPSTSMGN-LCNLHSLDIS----YNHITGEIKE-LTN-AFSACNVSTL 489 (636)
Q Consensus 420 --n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~~~-~~~-~~~~~~~~~L 489 (636)
+.+++. ++.....+++|++|+++.+.+++.....+.. +++|++|+++ .|.+++.+.+ .+. .+.. +++|
T Consensus 361 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~--~~~L 438 (592)
T 3ogk_B 361 EEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG--CKKL 438 (592)
T ss_dssp TTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH--CTTC
T ss_pred ccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh--CCCC
Confidence 344322 1122334677777777777776655444544 7777777775 5556543111 011 1111 3667
Q ss_pred cEEEcccCc--CCCCCchhhc-CCCCCCEEeCcCCccCC-ccChhhhCCCCCCeEeCcCcccccc-ccccccCCCCCCEE
Q 037514 490 ETLDLASNK--LGGNLPDSLG-NLLCLEYLGLSENSFLG-SLPTSIGNLSHLRALYLSFNVMSRI-ISENIGQLSEPYML 564 (636)
Q Consensus 490 ~~L~Ls~n~--l~~~~~~~l~-~l~~L~~L~Ls~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 564 (636)
++|++++|. +++..+..+. .+++|+.|++++|++++ .++..+.++++|++|++++|.+++. ++.....+++|++|
T Consensus 439 ~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEE
T ss_pred CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCee
Confidence 777776443 5544343333 46777777777777664 3344456677777777777776544 33334567777777
Q ss_pred ECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514 565 DLYGNSWEGVITEKHFRNLSGLDYLTISSS 594 (636)
Q Consensus 565 ~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n 594 (636)
++++|++++.........++.+....+..+
T Consensus 519 ~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 519 WVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred ECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 777777665433333445566655555543
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.6e-27 Score=231.81 Aligned_cols=231 Identities=19% Similarity=0.193 Sum_probs=178.9
Q ss_pred ceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECC
Q 037514 363 FKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIG 442 (636)
Q Consensus 363 ~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 442 (636)
+.++.+++.+... |..+ . +++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~~i-p~~~--~--~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVGI--P--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSC-CTTC--C--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccC-CcCC--C--CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 3445555555433 2221 1 578888888888877766778888888888888888887777788888888888888
Q ss_pred CCC-CCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCC
Q 037514 443 GNR-FLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSEN 521 (636)
Q Consensus 443 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 521 (636)
+|. +....+..+..+++|++|++++|++++..+..+.. +++|++|++++|++++..+..+..+++|++|++++|
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG-----LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC-----CcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence 886 77777777888888888888888887766655442 367788888888888666677888899999999999
Q ss_pred ccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccc
Q 037514 522 SFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFN 601 (636)
Q Consensus 522 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~ 601 (636)
++.+..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+ ++...+..+++|++|++++|++ .|+
T Consensus 164 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~--~c~ 240 (285)
T 1ozn_A 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPW--VCD 240 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCE--ECS
T ss_pred cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCc--cCC
Confidence 8886666678888999999999999988888888889999999999998885 6766788899999999999954 444
Q ss_pred ccccc
Q 037514 602 IRHDW 606 (636)
Q Consensus 602 ~~~~~ 606 (636)
+...|
T Consensus 241 ~~~~~ 245 (285)
T 1ozn_A 241 CRARP 245 (285)
T ss_dssp GGGHH
T ss_pred CCcHH
Confidence 44433
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=6.5e-27 Score=247.12 Aligned_cols=235 Identities=20% Similarity=0.230 Sum_probs=189.3
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514 69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS 148 (636)
Q Consensus 69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 148 (636)
.+|..+. +++++|+|++|++++..+..|.++++|++|+|++|.++++++.. |.++++|++|++++|.++
T Consensus 68 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---------~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 68 EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA---------FNGLASLNTLELFDNWLT 136 (452)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT---------TTTCTTCCEEECCSSCCS
T ss_pred ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh---------ccCcccCCEEECCCCcCC
Confidence 4565544 59999999999999999999999999999999999999877543 899999999999999999
Q ss_pred CCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCC-cCCcCCCccccCCCCCCEEeCcCCcCCCCCCC
Q 037514 149 KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD-NFNSQIPQWLFNISTLVTLNLRSSQLSGSIPK 227 (636)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 227 (636)
.++. ..|..+++|++|+|++|++....+..|.++++|++|++++| .+....+..|.++++|++|++++|+++ .+|.
T Consensus 137 ~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~ 213 (452)
T 3zyi_A 137 VIPS--GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN 213 (452)
T ss_dssp BCCT--TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC
T ss_pred ccCh--hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc
Confidence 8854 57899999999999999999888889999999999999995 555544557889999999999999998 4553
Q ss_pred CCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhc
Q 037514 228 FPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQ 307 (636)
Q Consensus 228 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~ 307 (636)
+..+++|++|++++|.+.+..+..+.. +++|+.|++++|++.+..+ ..|.
T Consensus 214 --~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------l~~L~~L~L~~n~l~~~~~-~~~~ 263 (452)
T 3zyi_A 214 --LTPLVGLEELEMSGNHFPEIRPGSFHG---------------------------LSSLKKLWVMNSQVSLIER-NAFD 263 (452)
T ss_dssp --CTTCTTCCEEECTTSCCSEECGGGGTT---------------------------CTTCCEEECTTSCCCEECT-TTTT
T ss_pred --ccccccccEEECcCCcCcccCcccccC---------------------------ccCCCEEEeCCCcCceECH-HHhc
Confidence 788999999999999998766655544 4567777777777766433 3677
Q ss_pred CCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCC
Q 037514 308 NLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLG 349 (636)
Q Consensus 308 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 349 (636)
.+++|+.|++++| .+.......+..+++|++|++++|.+.
T Consensus 264 ~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 264 GLASLVELNLAHN--NLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSS--CCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCC--cCCccChHHhccccCCCEEEccCCCcC
Confidence 7777777777777 333334444556667777777777654
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.1e-27 Score=241.23 Aligned_cols=257 Identities=18% Similarity=0.187 Sum_probs=201.7
Q ss_pred CCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcce
Q 037514 285 AELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFK 364 (636)
Q Consensus 285 ~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 364 (636)
++|++|++++|++++ ++...|.++++|++|++++| ......+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 52 ~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSN--GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred ccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCC--ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 489999999999987 55558999999999999999 566666777889999999999999999776677999999999
Q ss_pred eccccccCCCcch-hhHHhhcCCCccEEECccC-cCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECC
Q 037514 365 LTLSNAAISDTIP-DWFWGVISQKLSVIDLSNN-KFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIG 442 (636)
Q Consensus 365 L~L~~n~~~~~~~-~~~~~~~~~~L~~L~ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 442 (636)
|++++|++.+..+ ..+..+ ++|++|++++| .+.+..+..+..+++|++|++++|++.+..|..+..+++|++|+++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHL--TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTC--TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EECCCCCCcccCchhhhccC--CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 9999999997655 466666 89999999999 4766667889999999999999999998889999999999999999
Q ss_pred CCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCC----CCchhhcCCCCCCEEeC
Q 037514 443 GNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGG----NLPDSLGNLLCLEYLGL 518 (636)
Q Consensus 443 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L 518 (636)
+|.+...+...+..+++|++|++++|++++..+..+..... .+.++.++++++.+.+ .+|..+..+++|+.|++
T Consensus 207 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~--~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L 284 (353)
T 2z80_A 207 MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET--NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284 (353)
T ss_dssp CSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C--CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCccccchhhhhhhcccccEEECCCCccccccccccccccc--cchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence 99998877766777999999999999998766555443332 3667888888887764 24455555666666666
Q ss_pred cCCccCCccChh-hhCCCCCCeEeCcCccccc
Q 037514 519 SENSFLGSLPTS-IGNLSHLRALYLSFNVMSR 549 (636)
Q Consensus 519 s~n~~~~~~p~~-l~~l~~L~~L~Ls~n~l~~ 549 (636)
++|++. .+|.. |..+++|++|++++|++.+
T Consensus 285 s~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 285 SRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 666655 33333 3555555555555555544
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1e-27 Score=239.86 Aligned_cols=228 Identities=22% Similarity=0.237 Sum_probs=122.6
Q ss_pred CCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCc--chhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCc
Q 037514 336 FSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDT--IPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLY 413 (636)
Q Consensus 336 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 413 (636)
.++++|++++|.+....+..+..+++|++|++++|.+... .+..+... ++|++|++++|.+.. ++..+..+++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~--~~L~~L~Ls~n~i~~-l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT--TSLKYLDLSFNGVIT-MSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC--SCCCEEECCSCSEEE-EEEEEETCTTCC
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccc--cccCEEECCCCcccc-ChhhcCCCCCCC
Confidence 3566666666666544444455666666666666655532 23444444 556666666555542 333355555555
Q ss_pred EEEccCCcCCcccC-CCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEE
Q 037514 414 WLRLGGNNLSGELS-TSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETL 492 (636)
Q Consensus 414 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L 492 (636)
+|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------- 165 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN------------------- 165 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG-------------------
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc-------------------
Confidence 55555555543332 3455555555555555555544444444555555555555544320
Q ss_pred EcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcce
Q 037514 493 DLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWE 572 (636)
Q Consensus 493 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 572 (636)
..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus 166 ---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 166 ---------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp ---------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred ---------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 24445555556666666666655555555555666666666666665555555556666666666666665
Q ss_pred eecChhhhcCC-CCCCeeeCCCCC
Q 037514 573 GVITEKHFRNL-SGLDYLTISSSN 595 (636)
Q Consensus 573 ~~~~~~~~~~l-~~L~~L~ls~n~ 595 (636)
+..|.. +..+ ++|++|++++|+
T Consensus 237 ~~~~~~-~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 237 TSKKQE-LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp BCSSSS-CCCCCTTCCEEECTTCC
T ss_pred ccCHHH-HHhhhccCCEEEccCCC
Confidence 444432 4444 366666666663
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.9e-27 Score=236.51 Aligned_cols=211 Identities=19% Similarity=0.204 Sum_probs=161.4
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514 69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS 148 (636)
Q Consensus 69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 148 (636)
.+|..+. +++++|++++|.++...+..|+++++|++|++++|.++..... +.. +..+++|++|++++|.+.
T Consensus 21 ~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~----~~~~~~L~~L~Ls~n~i~ 91 (306)
T 2z66_A 21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC---SQS----DFGTTSLKYLDLSFNGVI 91 (306)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE---EHH----HHSCSCCCEEECCSCSEE
T ss_pred cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc---ccc----cccccccCEEECCCCccc
Confidence 3555443 5899999999999865555689999999999999998765310 001 557889999999999888
Q ss_pred CCCChhhhhCCCCCCCEEEccCCcCCCCCC-cCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCC-CCC
Q 037514 149 KVTNWLQVVNELPSLVELHLSNCQLNFPQS-LPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSG-SIP 226 (636)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p 226 (636)
.++ ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+ .+|
T Consensus 92 ~l~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 92 TMS---SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EEE---EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred cCh---hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 764 367888999999999998877655 578888999999999998888788888888999999999998875 234
Q ss_pred CCCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhh
Q 037514 227 KFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHF 306 (636)
Q Consensus 227 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~ 306 (636)
. .+..+++|++|++++|.+++..+. .+..+++|++|++++|++++. +...+
T Consensus 169 ~-~~~~l~~L~~L~Ls~n~l~~~~~~---------------------------~~~~l~~L~~L~L~~N~l~~~-~~~~~ 219 (306)
T 2z66_A 169 D-IFTELRNLTFLDLSQCQLEQLSPT---------------------------AFNSLSSLQVLNMSHNNFFSL-DTFPY 219 (306)
T ss_dssp S-CCTTCTTCCEEECTTSCCCEECTT---------------------------TTTTCTTCCEEECTTSCCSBC-CSGGG
T ss_pred h-HHhhCcCCCEEECCCCCcCCcCHH---------------------------HhcCCCCCCEEECCCCccCcc-Chhhc
Confidence 2 477888888888888887754443 344456888888888888773 33367
Q ss_pred cCCCCCCEEEccCC
Q 037514 307 QNLTKLNSLYLSSS 320 (636)
Q Consensus 307 ~~l~~L~~L~L~~n 320 (636)
..+++|+.|++++|
T Consensus 220 ~~l~~L~~L~L~~N 233 (306)
T 2z66_A 220 KCLNSLQVLDYSLN 233 (306)
T ss_dssp TTCTTCCEEECTTS
T ss_pred cCcccCCEeECCCC
Confidence 77777777777776
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.4e-26 Score=227.27 Aligned_cols=228 Identities=21% Similarity=0.224 Sum_probs=156.6
Q ss_pred EEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccC
Q 037514 340 QMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGG 419 (636)
Q Consensus 340 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~ 419 (636)
+++.+++.+.. +|..+ .+++++|++++|.+.+..+..+..+ ++|++|++++|.+++..+..+..+++|++|++++
T Consensus 15 ~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 15 TTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRAC--RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp EEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccC--CCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 44444444442 23322 3466777777777766666666555 6777777777777666666777777777777777
Q ss_pred Cc-CCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCc
Q 037514 420 NN-LSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNK 498 (636)
Q Consensus 420 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 498 (636)
|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+.. +++|++|++++|+
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-----LGNLTHLFLHGNR 164 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----CTTCCEEECCSSC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-----CCCccEEECCCCc
Confidence 76 55555666777777777777777777776666777777777777777776555443332 3566777777777
Q ss_pred CCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecCh
Q 037514 499 LGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITE 577 (636)
Q Consensus 499 l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 577 (636)
+++..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+.
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 7755555677777788888888877777777777777888888888877777667777778888888888877655443
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.3e-26 Score=230.39 Aligned_cols=229 Identities=21% Similarity=0.245 Sum_probs=121.2
Q ss_pred ccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEc
Q 037514 338 LRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRL 417 (636)
Q Consensus 338 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L 417 (636)
++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+ ++|++|++++|.++ .+|..+..+++|++|++
T Consensus 83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l--~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF--AGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGG--TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred eeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhcc--CCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 333333333444 34444555566666666666655 445555554 56666666666665 44555666666666666
Q ss_pred cCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccC
Q 037514 418 GGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASN 497 (636)
Q Consensus 418 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n 497 (636)
++|++.+.+|..+.. .. ....+..+++|++|++++|+++ .+|..+.. +++|++|++++|
T Consensus 158 ~~n~~~~~~p~~~~~------~~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-----l~~L~~L~L~~N 216 (328)
T 4fcg_A 158 RACPELTELPEPLAS------TD---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-----LQNLKSLKIRNS 216 (328)
T ss_dssp EEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCC-CCCGGGGG-----CTTCCEEEEESS
T ss_pred CCCCCccccChhHhh------cc---------chhhhccCCCCCEEECcCCCcC-cchHhhcC-----CCCCCEEEccCC
Confidence 666555555544432 00 0011223555555555555554 33332221 244455555555
Q ss_pred cCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecCh
Q 037514 498 KLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITE 577 (636)
Q Consensus 498 ~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 577 (636)
+++ .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|+
T Consensus 217 ~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 217 PLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 555 2344455555566666666555555555555555666666665555555555555556666666666555555555
Q ss_pred hhhcCCCCCCeeeCCCC
Q 037514 578 KHFRNLSGLDYLTISSS 594 (636)
Q Consensus 578 ~~~~~l~~L~~L~ls~n 594 (636)
. +..+++|+.+++..+
T Consensus 296 ~-l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 296 L-IAQLPANCIILVPPH 311 (328)
T ss_dssp G-GGGSCTTCEEECCGG
T ss_pred H-HhhccCceEEeCCHH
Confidence 4 555555666555544
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.1e-26 Score=231.74 Aligned_cols=208 Identities=20% Similarity=0.197 Sum_probs=179.4
Q ss_pred CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514 386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI 465 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 465 (636)
++++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++.+ |..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccC-cHHHhcCcCCCEEEC
Confidence 67888888888886 55666777889999999999888 7788888889999999999988854 556888899999999
Q ss_pred cCCcCCCchhhhHHh------hhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCe
Q 037514 466 SYNHITGEIKELTNA------FSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRA 539 (636)
Q Consensus 466 ~~n~l~~~~~~~~~~------~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~ 539 (636)
++|++.+.+|..+.. +. .+++|++|++++|+++ .+|..+..+++|++|++++|.+.+ +|..+..+++|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~--~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQ--GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEE--ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred CCCCCccccChhHhhccchhhhc--cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 998887777765432 11 1488899999999999 888899999999999999999994 6778999999999
Q ss_pred EeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccc
Q 037514 540 LYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFN 601 (636)
Q Consensus 540 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~ 601 (636)
|++++|.+.+.+|..+..+++|++|++++|++.+.+|.. +..+++|++|++++|+.....+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCTTCCCCC
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCCCCchhhcc
Confidence 999999999999999999999999999999999999986 8899999999999997654433
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.4e-28 Score=270.04 Aligned_cols=432 Identities=15% Similarity=0.078 Sum_probs=218.4
Q ss_pred CCCCCCCCEEecCCccCCC-CC----C--------hhhhhCCCCCCCEEEccCCcCCCCCCcCcc-CCCCCCEEEccCC-
Q 037514 131 LPDLSSSRYLHLEGMKLSK-VT----N--------WLQVVNELPSLVELHLSNCQLNFPQSLPFL-NFTSLSILELSYD- 195 (636)
Q Consensus 131 ~~~l~~L~~L~L~~n~l~~-~~----~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n- 195 (636)
+..+++|++|+++++.... .. . +......+++|++|++++|.++...+..+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 5567888999998875221 11 0 112234678888888888887655444454 5788888888888
Q ss_pred cCCcC-CCccccCCCCCCEEeCcCCcCCCCCCC-C--CCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccC
Q 037514 196 NFNSQ-IPQWLFNISTLVTLNLRSSQLSGSIPK-F--PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQ 271 (636)
Q Consensus 196 ~~~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~-~--~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~ 271 (636)
.++.. ++..+.++++|++|++++|.+++..+. + ....+++|++|++++|. .......+..
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~--------------- 205 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALER--------------- 205 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHH---------------
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHH---------------
Confidence 44432 344445788888888888886643211 1 13467788888888776 1111111111
Q ss_pred cCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccE----EecCCCCCCCCCccEE-EccCC
Q 037514 272 RMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLV----FTMRSDWIPPFSLRQM-AINDC 346 (636)
Q Consensus 272 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~~~L~~L-~l~~~ 346 (636)
.+..+++|++|++++|...+.++. .+..+++|++|++..+..... ......+..+++|+.+ .+.+.
T Consensus 206 --------l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~ 276 (594)
T 2p1m_B 206 --------LVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276 (594)
T ss_dssp --------HHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC
T ss_pred --------HHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc
Confidence 123467889999988833333444 677888899888776521000 0011123344555555 22221
Q ss_pred CCCcCCChhhcCCCCcceeccccccCCCcchhh-HHhhcCCCccEEECccCcCCcc-CCcccCCCCCCcEEEccC-----
Q 037514 347 QLGSAFPSWLKTQASVFKLTLSNAAISDTIPDW-FWGVISQKLSVIDLSNNKFFGG-ILSSLCSLPSLYWLRLGG----- 419 (636)
Q Consensus 347 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~L~~----- 419 (636)
. .+.++..+..+++|++|++++|.+++..... +..+ ++|++|++++| +.+. .+.....+++|++|++.+
T Consensus 277 ~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~--~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g 352 (594)
T 2p1m_B 277 V-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC--PKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV 352 (594)
T ss_dssp C-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC--TTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC
T ss_pred c-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC--CCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc
Confidence 1 1223333445566666666666644332222 2222 56666666655 2211 111122355666666632
Q ss_pred ----CcCCcccCCCC-CCCCCCCEEECCCCCCCCCcchhhc-CCCCCCeEeCc--C----CcCCCchh-hhHHh-hhcCC
Q 037514 420 ----NNLSGELSTSL-PDCSRLTALDIGGNRFLQLPSTSMG-NLCNLHSLDIS--Y----NHITGEIK-ELTNA-FSACN 485 (636)
Q Consensus 420 ----n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~~~-~~~~~-~~~~~ 485 (636)
+.+++.....+ ..+++|++|+++.+.+++.....+. .+++|+.|+++ + +.+++... ..+.. +..
T Consensus 353 ~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~-- 430 (594)
T 2p1m_B 353 MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH-- 430 (594)
T ss_dssp SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH--
T ss_pred cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh--
Confidence 22221111111 1245566665555555543333332 35566666665 2 33331111 01111 111
Q ss_pred CCcccEEEcccCcCCCCCchhhcC-CCCCCEEeCcCCccCCccChhh-hCCCCCCeEeCcCccccccccc-cccCCCCCC
Q 037514 486 VSTLETLDLASNKLGGNLPDSLGN-LLCLEYLGLSENSFLGSLPTSI-GNLSHLRALYLSFNVMSRIISE-NIGQLSEPY 562 (636)
Q Consensus 486 ~~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~ 562 (636)
+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+++|+
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 24556666654 444333333333 5566666666665544333333 4456666666666665433222 233455666
Q ss_pred EEECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514 563 MLDLYGNSWEGVITEKHFRNLSGLDYLTISSS 594 (636)
Q Consensus 563 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n 594 (636)
+|++++|+++..........++.|+...+..+
T Consensus 510 ~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 510 SLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp EEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred EEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 66666665532222222234455544444443
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1e-26 Score=232.77 Aligned_cols=248 Identities=21% Similarity=0.206 Sum_probs=195.7
Q ss_pred CCccEEEccCCCCCcCCChhhcCCCCcceeccccccCC-CcchhhHH-------hhcCCCccEEECccCcCCccCCccc-
Q 037514 336 FSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAIS-DTIPDWFW-------GVISQKLSVIDLSNNKFFGGILSSL- 406 (636)
Q Consensus 336 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~-~~~~~~~~-------~~~~~~L~~L~ls~n~l~~~~~~~~- 406 (636)
.+|+++++++|.+ .+|..+... ++.|++++|.+. ...|..+. .+ ++|++|++++|++++..|..+
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI--SGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT--SCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc--CCccEEEccCCcccchhHHHHH
Confidence 3566666666677 566655544 889999999884 34555443 45 899999999999988888776
Q ss_pred -CCCCCCcEEEccCCcCCcccCCCCCCC-----CCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHh
Q 037514 407 -CSLPSLYWLRLGGNNLSGELSTSLPDC-----SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNA 480 (636)
Q Consensus 407 -~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 480 (636)
..+++|++|++++|++++. |..+..+ ++|++|++++|++.+.++..++.+++|++|++++|++.+..+. ...
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~ 194 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL-ISA 194 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH-HHH
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH-HHH
Confidence 8899999999999999876 7666665 8999999999999999888899999999999999998754321 112
Q ss_pred hhcCCCCcccEEEcccCcCCCC--Cc-hhhcCCCCCCEEeCcCCccCCccC-hhhhCCCCCCeEeCcCcccccccccccc
Q 037514 481 FSACNVSTLETLDLASNKLGGN--LP-DSLGNLLCLEYLGLSENSFLGSLP-TSIGNLSHLRALYLSFNVMSRIISENIG 556 (636)
Q Consensus 481 ~~~~~~~~L~~L~Ls~n~l~~~--~~-~~l~~l~~L~~L~Ls~n~~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 556 (636)
.....+++|++|++++|++++. ++ ..+..+++|++|++++|++.+..| ..+..+++|++|++++|+++. +|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhhhcc
Confidence 2112458889999999999832 22 345688999999999999998775 456678999999999999984 566555
Q ss_pred CCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCC
Q 037514 557 QLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSS 597 (636)
Q Consensus 557 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~ 597 (636)
++|++|++++|++++ +|. +..+++|++|++++|+++
T Consensus 274 --~~L~~L~Ls~N~l~~-~p~--~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDR-NPS--PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp --SEEEEEECCSSCCCS-CCC--TTTSCEEEEEECTTCTTT
T ss_pred --CCceEEECCCCCCCC-Chh--HhhCCCCCEEeccCCCCC
Confidence 899999999999986 466 789999999999999654
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2.2e-28 Score=268.50 Aligned_cols=445 Identities=13% Similarity=0.114 Sum_probs=296.9
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCc-ccccccccccc----cc-cCCCCCCCCEEecCCccCCCCCChh
Q 037514 81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKE-YQITKELWVSD----LI-WLPDLSSSRYLHLEGMKLSKVTNWL 154 (636)
Q Consensus 81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~----~~-~~~~l~~L~~L~L~~n~l~~~~~~~ 154 (636)
+.++++++... .....+.++++|++|+++++.... ......-+... +. ....+++|++|++++|.++.. .+
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~--~~ 122 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD--CL 122 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH--HH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHH--HH
Confidence 56777665432 223446788999999999875321 11000000000 00 024688999999999988765 23
Q ss_pred hhhC-CCCCCCEEEccCCc-CCCC-CCcCccCCCCCCEEEccCCcCCcCCCcccc----CCCCCCEEeCcCCcCCCCCCC
Q 037514 155 QVVN-ELPSLVELHLSNCQ-LNFP-QSLPFLNFTSLSILELSYDNFNSQIPQWLF----NISTLVTLNLRSSQLSGSIPK 227 (636)
Q Consensus 155 ~~~~-~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~----~l~~L~~L~L~~n~l~~~~p~ 227 (636)
..+. .+++|++|++++|. +... .+..+.++++|++|++++|.+++..+.++. .+++|++|++++|. +.++.
T Consensus 123 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~ 200 (594)
T 2p1m_B 123 ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSF 200 (594)
T ss_dssp HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCH
T ss_pred HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCH
Confidence 3443 68999999999994 4321 233345789999999999998775555554 66799999999997 12221
Q ss_pred CC----CCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCC-------c
Q 037514 228 FP----PGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRN-------S 296 (636)
Q Consensus 228 ~~----~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n-------~ 296 (636)
.. ..++++|++|++++|...+..+ ..+..+++|++|++..+ .
T Consensus 201 ~~l~~l~~~~~~L~~L~L~~~~~~~~l~---------------------------~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 201 SALERLVTRCPNLKSLKLNRAVPLEKLA---------------------------TLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCTTSCHHHHH---------------------------HHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred HHHHHHHHhCCCCcEEecCCCCcHHHHH---------------------------HHHhcCCcceEcccccccCccchhh
Confidence 11 3457999999999883222222 33445668888886554 3
Q ss_pred CccccChhhhcCCCCCCEE-EccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCC-ChhhcCCCCcceeccccccCCC
Q 037514 297 WKGIITENHFQNLTKLNSL-YLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAF-PSWLKTQASVFKLTLSNAAISD 374 (636)
Q Consensus 297 ~~~~i~~~~~~~l~~L~~L-~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~L~~n~~~~ 374 (636)
+.+ ++. .+.++++|+.+ .+.+. ....++.....+++|++|++++|.+.+.. ...+..+++|++|++++| +.+
T Consensus 254 ~~~-l~~-~l~~~~~L~~Ls~~~~~---~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~ 327 (594)
T 2p1m_B 254 YSG-LSV-ALSGCKELRCLSGFWDA---VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED 327 (594)
T ss_dssp HHH-HHH-HHHTCTTCCEEECCBTC---CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH
T ss_pred HHH-HHH-HHhcCCCcccccCCccc---chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH
Confidence 333 333 68899999999 44432 11222222335689999999999976533 334668999999999998 443
Q ss_pred cchhhHH-hhcCCCccEEECcc---------CcCCccCCcccC-CCCCCcEEEccCCcCCcccCCCCC-CCCCCCEEECC
Q 037514 375 TIPDWFW-GVISQKLSVIDLSN---------NKFFGGILSSLC-SLPSLYWLRLGGNNLSGELSTSLP-DCSRLTALDIG 442 (636)
Q Consensus 375 ~~~~~~~-~~~~~~L~~L~ls~---------n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~ 442 (636)
.....+. .+ ++|++|++.+ +.+++.....+. .+++|++|.+..+.+++.....+. .+++|++|+++
T Consensus 328 ~~l~~l~~~~--~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 328 AGLEVLASTC--KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHHHHHHC--TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHhC--CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 3333333 34 8999999944 344433222232 478999999988888765444443 58899999999
Q ss_pred --C----CCCCCCc-----chhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhh-cCC
Q 037514 443 --G----NRFLQLP-----STSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSL-GNL 510 (636)
Q Consensus 443 --~----n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l-~~l 510 (636)
+ +.++..+ +..+..+++|++|++++ .+++.....+.. .+++|++|++++|.+++.....+ .++
T Consensus 406 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~----~~~~L~~L~L~~~~i~~~~~~~l~~~~ 480 (594)
T 2p1m_B 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT----YAKKMEMLSVAFAGDSDLGMHHVLSGC 480 (594)
T ss_dssp ESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH----HCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred cccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH----hchhccEeeccCCCCcHHHHHHHHhcC
Confidence 4 5565332 22366789999999987 666554444433 13788999999999986555555 679
Q ss_pred CCCCEEeCcCCccCCccCh-hhhCCCCCCeEeCcCccccccccccc-cCCCCCCEEECcCCc
Q 037514 511 LCLEYLGLSENSFLGSLPT-SIGNLSHLRALYLSFNVMSRIISENI-GQLSEPYMLDLYGNS 570 (636)
Q Consensus 511 ~~L~~L~Ls~n~~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~ 570 (636)
++|++|+|++|.+++.... .+..+++|++|++++|+++......+ ..++.|+...+..+.
T Consensus 481 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp TTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 9999999999998654443 34568999999999999865444444 567887776666554
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1e-26 Score=233.45 Aligned_cols=228 Identities=19% Similarity=0.154 Sum_probs=145.2
Q ss_pred CCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCccc
Q 037514 347 QLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGEL 426 (636)
Q Consensus 347 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 426 (636)
.+.+..|..+..+++|++|++++|.+.+..+ +..+ ++|++|++++|.+++.. ..++|++|++++|++++..
T Consensus 45 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l--~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~ 115 (317)
T 3o53_A 45 PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL--STLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVS 115 (317)
T ss_dssp CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTC--TTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEE
T ss_pred ccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhc--CCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcC
Confidence 4444444555566666666666666654443 3444 56666666666664332 2366777777777766544
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchh
Q 037514 427 STSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDS 506 (636)
Q Consensus 427 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 506 (636)
+.. +++|++|++++|.+++..+..+..+++|++|++++|++++..+..+.. .+++|++|++++|.+++. +.
T Consensus 116 ~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----~l~~L~~L~L~~N~l~~~-~~- 186 (317)
T 3o53_A 116 CSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA----SSDTLEHLNLQYNFIYDV-KG- 186 (317)
T ss_dssp ECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG----GTTTCCEEECTTSCCCEE-EC-
T ss_pred ccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh----ccCcCCEEECCCCcCccc-cc-
Confidence 332 456777777777777766666667777777777777776655443321 125667777777777643 22
Q ss_pred hcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCC
Q 037514 507 LGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGL 586 (636)
Q Consensus 507 l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 586 (636)
...+++|++|++++|++.+ +|..+..+++|++|++++|+++. +|..+..+++|+.|++++|++.+......+..+++|
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 2347778888888887774 44447777788888888887775 456677777888888888877733333456777777
Q ss_pred CeeeCCCC
Q 037514 587 DYLTISSS 594 (636)
Q Consensus 587 ~~L~ls~n 594 (636)
+.++++++
T Consensus 265 ~~l~l~~~ 272 (317)
T 3o53_A 265 QTVAKQTV 272 (317)
T ss_dssp HHHHHHHH
T ss_pred eEEECCCc
Confidence 77777744
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.8e-27 Score=235.18 Aligned_cols=252 Identities=21% Similarity=0.174 Sum_probs=181.0
Q ss_pred ccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCC-cCCChhhc--
Q 037514 281 IGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLG-SAFPSWLK-- 357 (636)
Q Consensus 281 l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~-- 357 (636)
++..++|+.+++++|.+ .+|...... |+.|++++| .+. ..++..+.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n--------------------------~l~~~~~~~~~~~~ 87 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRL--------------------------TVRAARIPSRILFG 87 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEE--------------------------EEEEEECBHHHHHH
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---Hhhcccccc--------------------------cccCCCcCHHHHHH
Confidence 45556788888888887 466532222 666666666 221 12333332
Q ss_pred -----CCCCcceeccccccCCCcchhhH--HhhcCCCccEEECccCcCCccCCcccCCC-----CCCcEEEccCCcCCcc
Q 037514 358 -----TQASVFKLTLSNAAISDTIPDWF--WGVISQKLSVIDLSNNKFFGGILSSLCSL-----PSLYWLRLGGNNLSGE 425 (636)
Q Consensus 358 -----~~~~L~~L~L~~n~~~~~~~~~~--~~~~~~~L~~L~ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~ 425 (636)
++++|++|++++|.+++..|..+ ... ++|++|++++|++++. |..+..+ ++|++|++++|++.+.
T Consensus 88 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l--~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~ 164 (312)
T 1wwl_A 88 ALRVLGISGLQELTLENLEVTGTAPPPLLEATG--PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF 164 (312)
T ss_dssp HHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS--CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC
T ss_pred HHHhcCcCCccEEEccCCcccchhHHHHHHhcC--CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc
Confidence 56667777777777766666554 344 6777777777777665 5555554 7888899998888877
Q ss_pred cCCCCCCCCCCCEEECCCCCCCCCc--chhh--cCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCC
Q 037514 426 LSTSLPDCSRLTALDIGGNRFLQLP--STSM--GNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGG 501 (636)
Q Consensus 426 ~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 501 (636)
.+..+..+++|++|++++|++.+.. +..+ ..+++|++|++++|++++........+. .+++|++|++++|++++
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA--ARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH--TTCCCSEEECTTSCCCS
T ss_pred hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh--cCCCCCEEECCCCcCCc
Confidence 7788888899999999999877641 2233 7889999999999998743221111122 23788999999999997
Q ss_pred CCc-hhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCccee
Q 037514 502 NLP-DSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEG 573 (636)
Q Consensus 502 ~~~-~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 573 (636)
..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 664 45677899999999999998 7777666 8999999999999987 55 8899999999999999875
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1e-23 Score=228.13 Aligned_cols=270 Identities=20% Similarity=0.220 Sum_probs=177.7
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhh
Q 037514 78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVV 157 (636)
Q Consensus 78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 157 (636)
.++++|++++|+++ .+|..+. ++|++|++++|.++.++. .+++|++|++++|.++.++.
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~-------------~l~~L~~L~Ls~N~l~~lp~----- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA-------------LPPELRTLEVSGNQLTSLPV----- 98 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC-------------CCTTCCEEEECSCCCSCCCC-----
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC-------------cCCCCCEEEcCCCcCCcCCC-----
Confidence 36899999999998 6777665 899999999999887542 45778888888888876642
Q ss_pred CCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCC
Q 037514 158 NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLR 237 (636)
Q Consensus 158 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 237 (636)
.+++|++|++++|.+++... .+++|++|++++|.+++ +|.. +++|++|++++|+++ .+|. .+++|+
T Consensus 99 -~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~ 164 (622)
T 3g06_A 99 -LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELC 164 (622)
T ss_dssp -CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCC
T ss_pred -CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCC
Confidence 56778888888887766433 45677777777777766 4543 366777777777666 3332 235566
Q ss_pred EEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEc
Q 037514 238 RLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYL 317 (636)
Q Consensus 238 ~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L 317 (636)
.|++++|.+++. | ..+++|+.|++++|++++ ++. ..++|+.|++
T Consensus 165 ~L~L~~N~l~~l----------------------------~---~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L 208 (622)
T 3g06_A 165 KLWAYNNQLTSL----------------------------P---MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWA 208 (622)
T ss_dssp EEECCSSCCSCC----------------------------C---CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEEC
T ss_pred EEECCCCCCCCC----------------------------c---ccCCCCcEEECCCCCCCC-CCC----ccchhhEEEC
Confidence 666666655421 1 112355556665555554 222 1233333333
Q ss_pred cCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCc
Q 037514 318 SSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK 397 (636)
Q Consensus 318 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~ 397 (636)
++ |.++... .. . ++|++|++++|.
T Consensus 209 ~~--------------------------------------------------N~l~~l~-~~---~--~~L~~L~Ls~N~ 232 (622)
T 3g06_A 209 YN--------------------------------------------------NRLTSLP-AL---P--SGLKELIVSGNR 232 (622)
T ss_dssp CS--------------------------------------------------SCCSSCC-CC---C--TTCCEEECCSSC
T ss_pred cC--------------------------------------------------CcccccC-CC---C--CCCCEEEccCCc
Confidence 33 3333211 11 1 567777777777
Q ss_pred CCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhh
Q 037514 398 FFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKEL 477 (636)
Q Consensus 398 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 477 (636)
+++ +| ..+++|++|++++|+++ .+|. .+++|++|++++|.++.++ ..+..+++|+.|++++|++++..+..
T Consensus 233 L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 233 LTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCC-GGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred cCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCC-HHHhhccccCEEEecCCCCCCcCHHH
Confidence 765 33 34578888888888887 4454 5678888888888888654 46888889999999999988888777
Q ss_pred HHhhhc
Q 037514 478 TNAFSA 483 (636)
Q Consensus 478 ~~~~~~ 483 (636)
+..+..
T Consensus 304 l~~L~~ 309 (622)
T 3g06_A 304 LREITS 309 (622)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 765543
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.6e-23 Score=225.09 Aligned_cols=269 Identities=23% Similarity=0.226 Sum_probs=179.8
Q ss_pred CCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCc
Q 037514 102 SNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPF 181 (636)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 181 (636)
.++++|++++|.++.++.. +. ++|++|++++|.++.++. .+++|++|+|++|+++....
T Consensus 40 ~~l~~L~ls~n~L~~lp~~----------l~--~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~--- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDC----------LP--AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPV--- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSC----------CC--TTCSEEEECSCCCSCCCC------CCTTCCEEEECSCCCSCCCC---
T ss_pred CCCcEEEecCCCcCccChh----------hC--CCCcEEEecCCCCCCCCC------cCCCCCEEEcCCCcCCcCCC---
Confidence 3588888888888876542 33 677888888887776643 45677777777777664332
Q ss_pred cCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCC
Q 037514 182 LNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCN 261 (636)
Q Consensus 182 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~ 261 (636)
.+++|++|++++|.+++ +|. .+++|++|++++|+++ .+|. .+++|++|++++|.+++...
T Consensus 99 -~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~---------- 158 (622)
T 3g06_A 99 -LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLPA---------- 158 (622)
T ss_dssp -CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCCC----------
T ss_pred -CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCcCC----------
Confidence 55677777777777666 343 4566667777776666 3332 23556666666555442100
Q ss_pred cccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEE
Q 037514 262 NSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQM 341 (636)
Q Consensus 262 ~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L 341 (636)
...+|+.|++++|++++ ++
T Consensus 159 ---------------------~~~~L~~L~L~~N~l~~-l~--------------------------------------- 177 (622)
T 3g06_A 159 ---------------------LPSELCKLWAYNNQLTS-LP--------------------------------------- 177 (622)
T ss_dssp ---------------------CCTTCCEEECCSSCCSC-CC---------------------------------------
T ss_pred ---------------------ccCCCCEEECCCCCCCC-Cc---------------------------------------
Confidence 01244455555554443 22
Q ss_pred EccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCc
Q 037514 342 AINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNN 421 (636)
Q Consensus 342 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 421 (636)
..+++|+.|++++|.+++..+ . . ++|+.|++++|.++.. |. .+++|++|++++|+
T Consensus 178 ---------------~~~~~L~~L~Ls~N~l~~l~~-~---~--~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~ 232 (622)
T 3g06_A 178 ---------------MLPSGLQELSVSDNQLASLPT-L---P--SELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNR 232 (622)
T ss_dssp ---------------CCCTTCCEEECCSSCCSCCCC-C---C--TTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSC
T ss_pred ---------------ccCCCCcEEECCCCCCCCCCC-c---c--chhhEEECcCCccccc-CC---CCCCCCEEEccCCc
Confidence 122344455555555443221 1 1 6899999999999753 32 35899999999999
Q ss_pred CCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCC
Q 037514 422 LSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGG 501 (636)
Q Consensus 422 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 501 (636)
+++ +| ..+++|++|++++|.++.++. .+++|+.|++++|+++ .+|..+.. +++|+.|++++|++++
T Consensus 233 L~~-lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~-----l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 233 LTS-LP---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLT-RLPESLIH-----LSSETTVNLEGNPLSE 298 (622)
T ss_dssp CSC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCC-SCCGGGGG-----SCTTCEEECCSCCCCH
T ss_pred cCc-CC---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCC-cCCHHHhh-----ccccCEEEecCCCCCC
Confidence 985 55 456899999999999997765 6789999999999998 55655543 3788999999999998
Q ss_pred CCchhhcCCC
Q 037514 502 NLPDSLGNLL 511 (636)
Q Consensus 502 ~~~~~l~~l~ 511 (636)
..|..+..++
T Consensus 299 ~~~~~l~~L~ 308 (622)
T 3g06_A 299 RTLQALREIT 308 (622)
T ss_dssp HHHHHHHHHH
T ss_pred cCHHHHHhcc
Confidence 8888776554
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.7e-25 Score=224.45 Aligned_cols=239 Identities=21% Similarity=0.174 Sum_probs=201.3
Q ss_pred CccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEE
Q 037514 337 SLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLR 416 (636)
Q Consensus 337 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 416 (636)
.++..+++++.+.......+..+++|++|++++|.+.+..|..+..+ ++|++|++++|.+++..+ +..+++|++|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~ 86 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLD--LESLSTLRTLD 86 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC--TTCCEEECTTSCCEEEEE--ETTCTTCCEEE
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCC--CcCCEEECCCCcCCcchh--hhhcCCCCEEE
Confidence 45556666666655555666777899999999999999999999888 999999999999987654 88999999999
Q ss_pred ccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEccc
Q 037514 417 LGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLAS 496 (636)
Q Consensus 417 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~ 496 (636)
+++|++++.. ..++|++|++++|.+++..+. .+++|++|++++|++++..+..+.. +++|++|++++
T Consensus 87 Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~L~Ls~ 153 (317)
T 3o53_A 87 LNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC-----RSRVQYLDLKL 153 (317)
T ss_dssp CCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGG-----GSSEEEEECTT
T ss_pred CcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhc-----cCCCCEEECCC
Confidence 9999987433 348999999999999987664 4688999999999999776655543 37789999999
Q ss_pred CcCCCCCchhh-cCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeec
Q 037514 497 NKLGGNLPDSL-GNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVI 575 (636)
Q Consensus 497 n~l~~~~~~~l-~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 575 (636)
|.+++..+..+ ..+++|++|++++|.+.+. +. ...+++|++|++++|++++..+. +..+++|+.|++++|++. .+
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l 229 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LI 229 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EE
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-ch
Confidence 99997777766 4789999999999999855 33 34589999999999999986554 889999999999999998 47
Q ss_pred ChhhhcCCCCCCeeeCCCCCCC
Q 037514 576 TEKHFRNLSGLDYLTISSSNSS 597 (636)
Q Consensus 576 ~~~~~~~l~~L~~L~ls~n~~~ 597 (636)
|.. +..+++|+.|++++|++.
T Consensus 230 ~~~-~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 230 EKA-LRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTT-CCCCTTCCEEECTTCCCB
T ss_pred hhH-hhcCCCCCEEEccCCCcc
Confidence 775 788999999999999665
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2e-23 Score=204.28 Aligned_cols=204 Identities=24% Similarity=0.283 Sum_probs=147.1
Q ss_pred CccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCc
Q 037514 387 KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDIS 466 (636)
Q Consensus 387 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 466 (636)
..+++++++++++. +|..+. +++++|++++|++.+..+..|.++++|++|++++|.++.+++..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45667777766654 333332 567777777777765555567777777777777777777766666777777777777
Q ss_pred CCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcc
Q 037514 467 YNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNV 546 (636)
Q Consensus 467 ~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~ 546 (636)
+|++++..+..+. .+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|+
T Consensus 94 ~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 94 DNKLQALPIGVFD-----QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp SSCCCCCCTTTTT-----TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCcCCHhHcc-----cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence 7777655544333 23566788888887776666777888888888888888876666667888888888888888
Q ss_pred ccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcc
Q 037514 547 MSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLV 599 (636)
Q Consensus 547 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~ 599 (636)
+++..+..|..+++|++|++++|++. .+|...|..+++|+.|++++|+....
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCeeCC
Confidence 88877777888888888888888887 46666677888888888888854433
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.1e-23 Score=207.09 Aligned_cols=208 Identities=23% Similarity=0.215 Sum_probs=169.9
Q ss_pred CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514 386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI 465 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 465 (636)
+++++|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 56888888888887776667888888888888888888666677888888888888888888887777888888888888
Q ss_pred cCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCC-CchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCC----eE
Q 037514 466 SYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGN-LPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLR----AL 540 (636)
Q Consensus 466 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~----~L 540 (636)
++|++.+..+..+. .+++|++|++++|++++. +|..+..+++|++|++++|++.+..+..+..+++|+ .|
T Consensus 108 ~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 108 VETNLASLENFPIG-----HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp TTSCCCCSTTCCCT-----TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred CCCCccccCchhcc-----cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence 88888765543333 347779999999998863 588899999999999999999877777787777777 89
Q ss_pred eCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCccc
Q 037514 541 YLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVF 600 (636)
Q Consensus 541 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~ 600 (636)
++++|++++..+..+.. .+|+.|++++|+++ .+|...|..+++|++|++++|++...|
T Consensus 183 ~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 183 DLSLNPMNFIQPGAFKE-IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp ECCSSCCCEECTTSSCS-CCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ecCCCcccccCccccCC-CcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccC
Confidence 99999999877666554 48999999999998 477777899999999999999665444
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1e-24 Score=231.51 Aligned_cols=237 Identities=19% Similarity=0.167 Sum_probs=177.0
Q ss_pred CCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEE
Q 037514 336 FSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWL 415 (636)
Q Consensus 336 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 415 (636)
++|++|++++|.+.+..|..+..+++|++|++++|.+++..| +..+ ++|++|++++|.+++..+ .++|++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l--~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL--STLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTC--TTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccC--CCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 356666666667777777778888888888888888877665 5555 788888888888765432 3788888
Q ss_pred EccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcc
Q 037514 416 RLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLA 495 (636)
Q Consensus 416 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls 495 (636)
++++|.+.+..+. .+++|++|++++|.+++..+..++.+++|++|++++|.+++.+|..+.. .+++|+.|+|+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~----~l~~L~~L~Ls 177 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA----SSDTLEHLNLQ 177 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG----GTTTCCEEECT
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh----hCCcccEEecC
Confidence 8888888765554 3467888888888888887777888888888888888888766655431 13677888888
Q ss_pred cCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeec
Q 037514 496 SNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVI 575 (636)
Q Consensus 496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 575 (636)
+|.+++. +. ...+++|+.|+|++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+..
T Consensus 178 ~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 178 YNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp TSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CCccccc-cc-cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 8888854 22 34578888888888888854 4448888888888888888886 5666888888888888888887333
Q ss_pred ChhhhcCCCCCCeeeCC
Q 037514 576 TEKHFRNLSGLDYLTIS 592 (636)
Q Consensus 576 ~~~~~~~l~~L~~L~ls 592 (636)
+...+..++.|+.++++
T Consensus 254 ~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 254 LRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHhCCCCcEEecc
Confidence 33446777777777775
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.4e-24 Score=227.50 Aligned_cols=217 Identities=21% Similarity=0.156 Sum_probs=189.3
Q ss_pred CCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCE
Q 037514 359 QASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTA 438 (636)
Q Consensus 359 ~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 438 (636)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.+++..+ +..+++|++|++++|.+++..+ .++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTC--TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCC--CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence 3489999999999999999999888 999999999999987665 8899999999999999985432 389999
Q ss_pred EECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhc-CCCCCCEEe
Q 037514 439 LDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLG-NLLCLEYLG 517 (636)
Q Consensus 439 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~ 517 (636)
|++++|.+++.++. .+++|+.|++++|.+++..|..+.. +++|+.|++++|.+++..|..+. .+++|+.|+
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC-----RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG-----GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC-----CCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 99999999988764 4688999999999999887766654 37789999999999988888876 799999999
Q ss_pred CcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCC
Q 037514 518 LSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSS 597 (636)
Q Consensus 518 Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~ 597 (636)
|++|.+.+..+ +..+++|++|++++|.+++.+|. +..+++|+.|++++|.+++ +|.. +..+++|+.|++++|++.
T Consensus 176 Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~-l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 176 LQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKA-LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTT-CCCCTTCCEEECTTCCBC
T ss_pred cCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchh-hccCCCCCEEEcCCCCCc
Confidence 99999986533 34689999999999999986655 8899999999999999995 7775 788999999999999654
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2.7e-23 Score=204.30 Aligned_cols=209 Identities=24% Similarity=0.222 Sum_probs=156.3
Q ss_pred CCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEE
Q 037514 360 ASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTAL 439 (636)
Q Consensus 360 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 439 (636)
+++++|++++|.+++..+..+..+ ++|++|++++|++++..+..+..+++|++|++++|++++..+..+.++++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSF--PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTC--TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccc--cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 457777777777776666666665 777777777777776666677777888888888888776666777788888888
Q ss_pred ECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCc-hhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCC----
Q 037514 440 DIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGE-IKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLE---- 514 (636)
Q Consensus 440 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~---- 514 (636)
++++|.+.+..+..+..+++|++|++++|++++. +|..+.. +++|++|++++|++++..+..+..+++|+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-----LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----CCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence 8888888777766677788888888888887653 3554443 25668888888888866666666666665
Q ss_pred EEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecC
Q 037514 515 YLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVIT 576 (636)
Q Consensus 515 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 576 (636)
.|++++|.+.+..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 181 ~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 888888888865555444 4478999999999888877778889999999999998887554
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1e-22 Score=199.21 Aligned_cols=206 Identities=21% Similarity=0.259 Sum_probs=172.8
Q ss_pred CcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEE
Q 037514 361 SVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALD 440 (636)
Q Consensus 361 ~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 440 (636)
..+.++++++.++.. |..+. +++++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~~i-p~~~~----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-PSNIP----ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSSC-CSCCC----TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCCcc-CCCCC----CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 356677777777643 32221 5788999999998877777888999999999999999866666678899999999
Q ss_pred CCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcC
Q 037514 441 IGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSE 520 (636)
Q Consensus 441 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 520 (636)
+++|.+++.++..+..+++|++|++++|++++..+..+. .+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD-----SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC-----cCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence 999999998888888999999999999999877666544 347789999999999976667789999999999999
Q ss_pred CccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecC
Q 037514 521 NSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVIT 576 (636)
Q Consensus 521 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 576 (636)
|.+.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++....+
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 99998777789999999999999999999888889999999999999999876543
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.2e-22 Score=200.52 Aligned_cols=198 Identities=22% Similarity=0.186 Sum_probs=115.8
Q ss_pred CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514 386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI 465 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 465 (636)
++++++++++++++.. |..+. ++++.|++++|.+++..+..+..+++|++|++++|.+++..+. ..+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEEC
T ss_pred CCccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEEC
Confidence 3444555555444322 22221 3555555555555544445555555555555555555554332 45555666666
Q ss_pred cCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCc
Q 037514 466 SYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFN 545 (636)
Q Consensus 466 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n 545 (636)
++|+++ .+|..+. .+++|++|++++|++++..+..|.++++|++|++++|++.+..+..|..+++|+.|++++|
T Consensus 85 s~N~l~-~l~~~~~-----~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQ-----TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CSSCCS-SCCCCTT-----TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCcCC-cCchhhc-----cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 666555 2222221 2355566666666666555566677777777777777776655556666777777777777
Q ss_pred cccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCC
Q 037514 546 VMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNS 596 (636)
Q Consensus 546 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~ 596 (636)
+++...+..|..+++|+.|++++|++. .+|...+ ...+|+.+++++|+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~-~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCB
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc-ccccCCeEEeCCCCc
Confidence 777666666667777777777777776 4666533 445777777777744
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=6.2e-24 Score=217.32 Aligned_cols=255 Identities=18% Similarity=0.155 Sum_probs=159.6
Q ss_pred EEccCCCCCcCCChhhcCCCCcceeccccccCCCcch----hhHHhhcCC-CccEEECccCcCCccCCcccCCC-----C
Q 037514 341 MAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIP----DWFWGVISQ-KLSVIDLSNNKFFGGILSSLCSL-----P 410 (636)
Q Consensus 341 L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~----~~~~~~~~~-~L~~L~ls~n~l~~~~~~~~~~l-----~ 410 (636)
.+++.+.+++.+|..+...++|++|++++|.+.+..+ ..+... + +|++|++++|.+++..+..+..+ +
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~--~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANT--PASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTC--CTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhC--CCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4556666666666666666667777777777776665 445444 5 67777777777766655555443 7
Q ss_pred CCcEEEccCCcCCcccCCC----CCCC-CCCCEEECCCCCCCCCcchhhc----C-CCCCCeEeCcCCcCCCchhhhHHh
Q 037514 411 SLYWLRLGGNNLSGELSTS----LPDC-SRLTALDIGGNRFLQLPSTSMG----N-LCNLHSLDISYNHITGEIKELTNA 480 (636)
Q Consensus 411 ~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~~~----~-l~~L~~L~l~~n~l~~~~~~~~~~ 480 (636)
+|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+. . .++|++|++++|++++.....+..
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 7777777777776544332 3333 6777777777777766554432 3 357777777777777544444332
Q ss_pred hhcCCCCcccEEEcccCcCCCCCchh----hcCC-CCCCEEeCcCCccCCc----cChhhhC-CCCCCeEeCcCcccccc
Q 037514 481 FSACNVSTLETLDLASNKLGGNLPDS----LGNL-LCLEYLGLSENSFLGS----LPTSIGN-LSHLRALYLSFNVMSRI 550 (636)
Q Consensus 481 ~~~~~~~~L~~L~Ls~n~l~~~~~~~----l~~l-~~L~~L~Ls~n~~~~~----~p~~l~~-l~~L~~L~Ls~n~l~~~ 550 (636)
.-....++|++|++++|++++..+.. +..+ ++|+.|+|++|.+.+. ++..+.. .++|++|++++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 21111136777777777777555543 3344 4777888887777652 3444544 34777888887777765
Q ss_pred cc----ccccCCCCCCEEECcCCcceeecCh-------hhhcCCCCCCeeeCCCCCCCc
Q 037514 551 IS----ENIGQLSEPYMLDLYGNSWEGVITE-------KHFRNLSGLDYLTISSSNSSL 598 (636)
Q Consensus 551 ~~----~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~~l~~L~~L~ls~n~~~~ 598 (636)
.+ ..+..+++|++|++++|.+.+ +.. ..+..+++|++||+++|++..
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~-i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKN-MSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTT-CCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccc-cCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 43 334566777788887777442 222 135566777777888776543
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.2e-22 Score=198.88 Aligned_cols=135 Identities=31% Similarity=0.384 Sum_probs=68.8
Q ss_pred hCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCC
Q 037514 157 VNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNL 236 (636)
Q Consensus 157 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 236 (636)
+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.++ .+|...+.++++|
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 159 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNL 159 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccC
Confidence 444455555555555554444444455555555555555555444444455555555555555554 2222224455555
Q ss_pred CEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEE
Q 037514 237 RRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLY 316 (636)
Q Consensus 237 ~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~ 316 (636)
++|++++|.+++..+. .++.+++|++|++++|++.+ ++...+..+++|+.|+
T Consensus 160 ~~L~l~~n~l~~~~~~---------------------------~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEG---------------------------VFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIW 211 (272)
T ss_dssp CEEECCSSCCCCCCTT---------------------------TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEE
T ss_pred CEEECCCCCcCccCHH---------------------------HhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEE
Confidence 5555555554432221 12334456666666666665 3333566666666666
Q ss_pred ccCC
Q 037514 317 LSSS 320 (636)
Q Consensus 317 L~~n 320 (636)
+++|
T Consensus 212 l~~N 215 (272)
T 3rfs_A 212 LHDN 215 (272)
T ss_dssp CCSS
T ss_pred ccCC
Confidence 6666
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=9.2e-24 Score=218.28 Aligned_cols=246 Identities=21% Similarity=0.230 Sum_probs=174.7
Q ss_pred CCChhhcCCCCcceeccccccCCCcchhhHH----hhcCCCccEEECccCcC---CccCCccc-------CCCCCCcEEE
Q 037514 351 AFPSWLKTQASVFKLTLSNAAISDTIPDWFW----GVISQKLSVIDLSNNKF---FGGILSSL-------CSLPSLYWLR 416 (636)
Q Consensus 351 ~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~----~~~~~~L~~L~ls~n~l---~~~~~~~~-------~~l~~L~~L~ 416 (636)
.++..+..+++|++|++++|.+.+..+..+. .. ++|++|++++|.+ .+.+|..+ ..+++|++|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~--~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK--KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTC--TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhC--CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 3556667777788888888877766554433 34 6788888887533 33444333 6778888888
Q ss_pred ccCCcCCc----ccCCCCCCCCCCCEEECCCCCCCCCcchhhc----CC---------CCCCeEeCcCCcCC-CchhhhH
Q 037514 417 LGGNNLSG----ELSTSLPDCSRLTALDIGGNRFLQLPSTSMG----NL---------CNLHSLDISYNHIT-GEIKELT 478 (636)
Q Consensus 417 L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~l~~n~l~-~~~~~~~ 478 (636)
+++|.+.+ .++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|+++ +.++...
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 88888875 3556677788888888888888654333333 33 78888888888887 3444333
Q ss_pred HhhhcCCCCcccEEEcccCcCCC-----CCchhhcCCCCCCEEeCcCCccC----CccChhhhCCCCCCeEeCcCccccc
Q 037514 479 NAFSACNVSTLETLDLASNKLGG-----NLPDSLGNLLCLEYLGLSENSFL----GSLPTSIGNLSHLRALYLSFNVMSR 549 (636)
Q Consensus 479 ~~~~~~~~~~L~~L~Ls~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~~~----~~~p~~l~~l~~L~~L~Ls~n~l~~ 549 (636)
..+..+ ++|++|++++|+++. ..+..+..+++|+.|+|++|.+. +.+|..+..+++|++|++++|.+++
T Consensus 181 ~~l~~~--~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 181 KTFQSH--RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHC--TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHhC--CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 334433 677888888888872 23336778888888888888885 5677788888888888888888877
Q ss_pred c----ccccccC--CCCCCEEECcCCccee----ecChhhhcCCCCCCeeeCCCCCCCccc
Q 037514 550 I----ISENIGQ--LSEPYMLDLYGNSWEG----VITEKHFRNLSGLDYLTISSSNSSLVF 600 (636)
Q Consensus 550 ~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~ls~n~~~~~~ 600 (636)
. ++..+.. +++|++|++++|++.+ .+|...+.++++|++|++++|++....
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6 4555633 8888888888888886 477765577888888888888765433
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.3e-21 Score=192.90 Aligned_cols=202 Identities=24% Similarity=0.242 Sum_probs=115.5
Q ss_pred CCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCC
Q 037514 358 TQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLT 437 (636)
Q Consensus 358 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 437 (636)
+++++++++++++.++...+... +.+++|++++|.+++..+..+..+++|++|++++|.+++..+. ..+++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~-----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP-----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC-----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccCCccEEECCCCCCCcCCCCCC-----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 34445555555554443322111 4455556666555555555555566666666666655533221 4555666
Q ss_pred EEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEe
Q 037514 438 ALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLG 517 (636)
Q Consensus 438 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 517 (636)
+|++++|.++.++. .+..+++|++|++++|++++..+..+.. +++|++|++++|++++..+..|..+++|+.|+
T Consensus 81 ~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 81 TLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRG-----LGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp EEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTT-----CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcC-----CCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 66666666654432 3555666666666666665444443332 24556666666666655555566667777777
Q ss_pred CcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCccee
Q 037514 518 LSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEG 573 (636)
Q Consensus 518 Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 573 (636)
+++|++.+..+..|..+++|++|++++|+++. +|..+...+.|+.+++++|++..
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccC
Confidence 77777765555555667777777777777764 44555556677777777776654
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=201.51 Aligned_cols=204 Identities=21% Similarity=0.187 Sum_probs=130.3
Q ss_pred CCccEEECccCcCCccCCccc--CCCCCCcEEEccCCcCCcccC----CCCCCCCCCCEEECCCCCCCCCcchhhcCCCC
Q 037514 386 QKLSVIDLSNNKFFGGILSSL--CSLPSLYWLRLGGNNLSGELS----TSLPDCSRLTALDIGGNRFLQLPSTSMGNLCN 459 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 459 (636)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.++..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 457777777777766666665 667777777777777665333 22345667777777777777766666777777
Q ss_pred CCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCch----hhcCCCCCCEEeCcCCccCCccChhhhCC-
Q 037514 460 LHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPD----SLGNLLCLEYLGLSENSFLGSLPTSIGNL- 534 (636)
Q Consensus 460 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l- 534 (636)
|++|++++|++.+..... .......+++|++|++++|+++ .++. .++.+++|++|+|++|++.+..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~-~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLM-AALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHH-TTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCEEECCCCCCccchhhh-HHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 777777777765321100 0000012466777777777776 2232 24566777777777777776666666655
Q ss_pred --CCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCC
Q 037514 535 --SHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSS 597 (636)
Q Consensus 535 --~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~ 597 (636)
++|++|++++|+++. +|..+. ++|++|++++|++++ +|. +..+++|+.|++++|+++
T Consensus 249 ~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~-~~~--~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNR-APQ--PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCS-CCC--TTSCCCCSCEECSSTTTS
T ss_pred CcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCC-Cch--hhhCCCccEEECcCCCCC
Confidence 577777777777774 344443 677777887777774 343 556777788888877543
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2.8e-22 Score=200.40 Aligned_cols=229 Identities=21% Similarity=0.211 Sum_probs=184.0
Q ss_pred CCCccEEEccCCCCCcCCCh---hhcCCCCcceeccccccCCCcchhhH--HhhcCCCccEEECccCcCCccCC----cc
Q 037514 335 PFSLRQMAINDCQLGSAFPS---WLKTQASVFKLTLSNAAISDTIPDWF--WGVISQKLSVIDLSNNKFFGGIL----SS 405 (636)
Q Consensus 335 ~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~L~~n~~~~~~~~~~--~~~~~~~L~~L~ls~n~l~~~~~----~~ 405 (636)
...++.+.+.++.+...... ....+++|++|++++|.+.+..|..+ ... ++|++|++++|.+++..+ ..
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATG--LALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCC--BCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccC--CCCCEEEeecccccchhhhhHHHH
Confidence 34688899998887542111 12234679999999999999988876 555 899999999999987544 34
Q ss_pred cCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCC---cc-hhhcCCCCCCeEeCcCCcCCCchhhhHHh-
Q 037514 406 LCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQL---PS-TSMGNLCNLHSLDISYNHITGEIKELTNA- 480 (636)
Q Consensus 406 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~- 480 (636)
+..+++|++|++++|++.+..+..+..+++|++|++++|++.+. .+ ..+..+++|++|++++|+++.. +.....
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHH
Confidence 55789999999999999988888999999999999999998752 22 2246889999999999999743 332211
Q ss_pred hhcCCCCcccEEEcccCcCCCCCchhhcCC---CCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccC
Q 037514 481 FSACNVSTLETLDLASNKLGGNLPDSLGNL---LCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQ 557 (636)
Q Consensus 481 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 557 (636)
+.. +++|++|++++|++++..|..+..+ ++|++|++++|++. .+|..+. ++|++|++++|++++. |. +..
T Consensus 220 ~~~--l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~ 292 (310)
T 4glp_A 220 AAA--GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDE 292 (310)
T ss_dssp HHH--TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTS
T ss_pred Hhc--CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhh
Confidence 222 3788999999999998878777776 69999999999999 6777664 8999999999999986 33 688
Q ss_pred CCCCCEEECcCCccee
Q 037514 558 LSEPYMLDLYGNSWEG 573 (636)
Q Consensus 558 l~~L~~L~L~~n~l~~ 573 (636)
+++|+.|++++|+++.
T Consensus 293 l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 293 LPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSCEECSSTTTSC
T ss_pred CCCccEEECcCCCCCC
Confidence 8999999999999874
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=9.9e-22 Score=192.38 Aligned_cols=179 Identities=23% Similarity=0.283 Sum_probs=95.7
Q ss_pred CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514 386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI 465 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 465 (636)
++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.++..+..+++|++|++
T Consensus 63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 4444444444444331 23444555555555555555444444555555555555555555555544555555555555
Q ss_pred cCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCc
Q 037514 466 SYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFN 545 (636)
Q Consensus 466 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n 545 (636)
++|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|++.+..|..+..+++|++|++++|
T Consensus 141 ~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 141 AHNQLQSLPKGVFD-----KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccCccCHHHhc-----cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 55555544333222 1244555566655555444445556666666666666666555555566666666666666
Q ss_pred cccccccccccCCCCCCEEECcCCcceeecChh
Q 037514 546 VMSRIISENIGQLSEPYMLDLYGNSWEGVITEK 578 (636)
Q Consensus 546 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 578 (636)
.+.+. ++.|+.++++.|.++|.+|..
T Consensus 216 ~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 216 PWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred Ccccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 55432 345566666666666666553
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=5e-22 Score=190.64 Aligned_cols=197 Identities=19% Similarity=0.224 Sum_probs=162.9
Q ss_pred CCccEEECccCcCCccCCcccCCCCCCcEEEccCCc-CCcccCCCCCCCCCCCEEECCC-CCCCCCcchhhcCCCCCCeE
Q 037514 386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNN-LSGELSTSLPDCSRLTALDIGG-NRFLQLPSTSMGNLCNLHSL 463 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 463 (636)
+++++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |.++++++..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 578888888888887777788888999999999997 7766666788899999999998 88988888888899999999
Q ss_pred eCcCCcCCCchhhhHHhhhcCCCCccc---EEEcccC-cCCCCCchhhcCCCCCC-EEeCcCCccCCccChhhhCCCCCC
Q 037514 464 DISYNHITGEIKELTNAFSACNVSTLE---TLDLASN-KLGGNLPDSLGNLLCLE-YLGLSENSFLGSLPTSIGNLSHLR 538 (636)
Q Consensus 464 ~l~~n~l~~~~~~~~~~~~~~~~~~L~---~L~Ls~n-~l~~~~~~~l~~l~~L~-~L~Ls~n~~~~~~p~~l~~l~~L~ 538 (636)
++++|++++ +|. +.. +++|+ +|++++| ++++..+..|.++++|+ .|++++|++....+..+.. ++|+
T Consensus 111 ~l~~n~l~~-lp~-~~~-----l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~ 182 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTK-----VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLD 182 (239)
T ss_dssp EEEEECCCS-CCC-CTT-----CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEE
T ss_pred eCCCCCCcc-ccc-ccc-----ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCC
Confidence 999999886 443 332 35556 9999999 88876677799999999 9999999998433444554 8999
Q ss_pred eEeCcCcc-ccccccccccCC-CCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514 539 ALYLSFNV-MSRIISENIGQL-SEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSS 594 (636)
Q Consensus 539 ~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n 594 (636)
+|++++|+ +++..+..|..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC
T ss_pred EEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCc
Confidence 99999995 998888889999 99999999999998 47765 6788999999886
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=3e-22 Score=204.81 Aligned_cols=221 Identities=20% Similarity=0.273 Sum_probs=111.7
Q ss_pred hcCCC-CcceeccccccCCCcchhhHHhhc---CCCccEEECccCcCCccCCcc----cCCC-CCCcEEEccCCcCCccc
Q 037514 356 LKTQA-SVFKLTLSNAAISDTIPDWFWGVI---SQKLSVIDLSNNKFFGGILSS----LCSL-PSLYWLRLGGNNLSGEL 426 (636)
Q Consensus 356 l~~~~-~L~~L~L~~n~~~~~~~~~~~~~~---~~~L~~L~ls~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~ 426 (636)
+..++ +|++|++++|.+.+..+..+.... .++|++|++++|.+++..+.. +..+ ++|++|++++|++++..
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 33344 444444444444444343333310 034555555555544333322 2222 45556666666554332
Q ss_pred CCC----CCC-CCCCCEEECCCCCCCCCcch----hhcCCC-CCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEccc
Q 037514 427 STS----LPD-CSRLTALDIGGNRFLQLPST----SMGNLC-NLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLAS 496 (636)
Q Consensus 427 ~~~----~~~-l~~L~~L~L~~n~l~~~~~~----~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~ 496 (636)
+.. +.. .++|++|++++|.+++.... .+...+ +|++|++++|++++..+..+...-....++|++|++++
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence 222 222 24666666666666543322 223343 66666666666665555444332111113566666666
Q ss_pred CcCCCC----CchhhcC-CCCCCEEeCcCCccCCccCh----hhhCCCCCCeEeCcCccccccc-------cccccCCCC
Q 037514 497 NKLGGN----LPDSLGN-LLCLEYLGLSENSFLGSLPT----SIGNLSHLRALYLSFNVMSRII-------SENIGQLSE 560 (636)
Q Consensus 497 n~l~~~----~~~~l~~-l~~L~~L~Ls~n~~~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~-------~~~~~~l~~ 560 (636)
|.+++. ++..+.. .++|++|+|++|.+.+..+. .+..+++|++|++++|.+.+.. +..+..+++
T Consensus 206 N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~ 285 (362)
T 3goz_A 206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285 (362)
T ss_dssp SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE
T ss_pred CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc
Confidence 666642 3334444 34677777777766654332 2345566777777777644332 234556677
Q ss_pred CCEEECcCCcceeecC
Q 037514 561 PYMLDLYGNSWEGVIT 576 (636)
Q Consensus 561 L~~L~L~~n~l~~~~~ 576 (636)
|+.|++++|++.+..+
T Consensus 286 L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 286 IILVDKNGKEIHPSHS 301 (362)
T ss_dssp EEEECTTSCBCCGGGC
T ss_pred eEEEecCCCcCCCcch
Confidence 7777777777665433
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.2e-22 Score=205.89 Aligned_cols=246 Identities=20% Similarity=0.267 Sum_probs=153.9
Q ss_pred ccEEEccCCCCCcCCChhhcCC--CCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCcc-CCcccCCCCCCcE
Q 037514 338 LRQMAINDCQLGSAFPSWLKTQ--ASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGG-ILSSLCSLPSLYW 414 (636)
Q Consensus 338 L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~ 414 (636)
++.++++++.+. +..+..+ +.++.|++++|.+.+..+..+ .. ++|++|++++|.+++. .+..+..+++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~-~~--~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SP--FRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCC-CC--BCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhc-cC--CCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 444444444443 3344444 566677777776666555432 23 6677777777776554 5556667777777
Q ss_pred EEccCCcCCcccCCCCCCCCCCCEEECCCC-CCCCC-cchhhcCCCCCCeEeCcCC-cCCCc-hhhhHHhhhcCCCC-cc
Q 037514 415 LRLGGNNLSGELSTSLPDCSRLTALDIGGN-RFLQL-PSTSMGNLCNLHSLDISYN-HITGE-IKELTNAFSACNVS-TL 489 (636)
Q Consensus 415 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~~~~~~-~L 489 (636)
|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+.. ++ +|
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-----l~~~L 197 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH-----VSETI 197 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH-----SCTTC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh-----cccCC
Confidence 777777776666666666777777777777 55542 3444667777777777777 66643 3333332 25 66
Q ss_pred cEEEcccC--cCC-CCCchhhcCCCCCCEEeCcCCc-cCCccChhhhCCCCCCeEeCcCcc-ccccccccccCCCCCCEE
Q 037514 490 ETLDLASN--KLG-GNLPDSLGNLLCLEYLGLSENS-FLGSLPTSIGNLSHLRALYLSFNV-MSRIISENIGQLSEPYML 564 (636)
Q Consensus 490 ~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~Ls~n~-~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 564 (636)
++|++++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 77777777 444 3455666777778888888777 555666677777778888887774 333222356677778888
Q ss_pred ECcCCcceeecChhhhcCC-CCCCeeeCCCCCCCcc
Q 037514 565 DLYGNSWEGVITEKHFRNL-SGLDYLTISSSNSSLV 599 (636)
Q Consensus 565 ~L~~n~l~~~~~~~~~~~l-~~L~~L~ls~n~~~~~ 599 (636)
++++| +++..+..+ ..++.|++++|.++..
T Consensus 278 ~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 278 QVFGI-----VPDGTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp ECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCT
T ss_pred eccCc-----cCHHHHHHHHhhCcceEEecccCccc
Confidence 88777 333334443 2366677777765543
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=4.1e-21 Score=185.65 Aligned_cols=180 Identities=19% Similarity=0.252 Sum_probs=117.3
Q ss_pred CccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCc
Q 037514 387 KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDIS 466 (636)
Q Consensus 387 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 466 (636)
..++++++++.++. +|..+. ++++.|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45677777777753 333332 567777777777776666667777777777777777777776667777777777777
Q ss_pred CCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcc
Q 037514 467 YNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNV 546 (636)
Q Consensus 467 ~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~ 546 (636)
+|++++..+..+.. +++|++|++++|++++..+..+..+++|+.|+|++|++.+..+..|..+++|++|++++|+
T Consensus 92 ~n~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 92 NNQLASLPLGVFDH-----LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp TSCCCCCCTTTTTT-----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccccChhHhcc-----cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 77776554444332 2555666666666665555556666666666666666665555556666666666666666
Q ss_pred ccccccccccCCCCCCEEECcCCcceee
Q 037514 547 MSRIISENIGQLSEPYMLDLYGNSWEGV 574 (636)
Q Consensus 547 l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 574 (636)
+++..+..+..+++|+.|++++|++.+.
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6666665666666666666666666543
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.8e-21 Score=186.85 Aligned_cols=204 Identities=19% Similarity=0.236 Sum_probs=161.7
Q ss_pred cccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCC-CCcccccccccccccccCCCCCCCCEEecCC-c
Q 037514 68 SPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQN-LKEYQITKELWVSDLIWLPDLSSSRYLHLEG-M 145 (636)
Q Consensus 68 ~~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-n 145 (636)
..+|. +. +++++|++++|++++..+..|+++++|++|++++|. ++.++... +.++++|++|++++ |
T Consensus 24 ~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~---------f~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 24 QRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS---------FYNLSKVTHIEIRNTR 91 (239)
T ss_dssp SSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT---------EESCTTCCEEEEEEET
T ss_pred cccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH---------cCCCcCCcEEECCCCC
Confidence 34565 43 389999999999998888889999999999999997 88876543 78899999999998 8
Q ss_pred cCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCC---EEEccCC-cCCcCCCccccCCCCCC-EEeCcCCc
Q 037514 146 KLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLS---ILELSYD-NFNSQIPQWLFNISTLV-TLNLRSSQ 220 (636)
Q Consensus 146 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~~~~~~p~~l~~l~~L~-~L~L~~n~ 220 (636)
.++.++. ..|..+++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+..|.++++|+ +|++++|+
T Consensus 92 ~l~~i~~--~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 92 NLTYIDP--DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp TCCEECT--TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred CeeEcCH--HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 9988753 578889999999999999887 444 78888888 9999999 88886667788899999 99999998
Q ss_pred CCCCCCCCCCCCCCCCCEEEccccc-CccccchhhhccccCCcccchhhccCcCcccccccccCC-CCCCEEEccCCcCc
Q 037514 221 LSGSIPKFPPGKMCNLRRLDLAING-FSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQL-AELVALNLYRNSWK 298 (636)
Q Consensus 221 l~~~~p~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l-~~L~~L~l~~n~~~ 298 (636)
++ .+|...+.. ++|++|++++|. +++..+.. +..+ ++|+.|++++|+++
T Consensus 168 l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~---------------------------~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 168 FT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDA---------------------------FGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CC-EECTTTTTT-CEEEEEECTTCTTCCEECTTT---------------------------TTTCSBCCSEEECTTCCCC
T ss_pred Cc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHH---------------------------hhccccCCcEEECCCCccc
Confidence 88 666544555 788999998884 76544333 3444 58888999998887
Q ss_pred cccChhhhcCCCCCCEEEccCC
Q 037514 299 GIITENHFQNLTKLNSLYLSSS 320 (636)
Q Consensus 299 ~~i~~~~~~~l~~L~~L~L~~n 320 (636)
+ +|.. .+++|+.|+++++
T Consensus 219 ~-l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 219 A-LPSK---GLEHLKELIARNT 236 (239)
T ss_dssp C-CCCT---TCTTCSEEECTTC
T ss_pred c-CChh---HhccCceeeccCc
Confidence 6 5542 5777888888765
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=3.2e-23 Score=214.22 Aligned_cols=207 Identities=21% Similarity=0.233 Sum_probs=131.4
Q ss_pred CCccEEECccCcCCc----cCCcccCCCCCCcEEEccCCcCCcccCCC----CCCC---------CCCCEEECCCCCCCC
Q 037514 386 QKLSVIDLSNNKFFG----GILSSLCSLPSLYWLRLGGNNLSGELSTS----LPDC---------SRLTALDIGGNRFLQ 448 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l---------~~L~~L~L~~n~l~~ 448 (636)
++|++|++++|.+.+ .++..+..+++|++|++++|.++...+.. +..+ ++|++|++++|+++.
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 555666666665554 23444555666666666666654322222 2222 677778888777763
Q ss_pred -Ccc---hhhcCCCCCCeEeCcCCcCCCchhhh-HH-hhhcCCCCcccEEEcccCcCC----CCCchhhcCCCCCCEEeC
Q 037514 449 -LPS---TSMGNLCNLHSLDISYNHITGEIKEL-TN-AFSACNVSTLETLDLASNKLG----GNLPDSLGNLLCLEYLGL 518 (636)
Q Consensus 449 -~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~-~~-~~~~~~~~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~L 518 (636)
..+ ..+..+++|++|++++|+++...... .. .+.. +++|++|+|++|.++ ..+|..+..+++|+.|+|
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~--~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY--CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG--CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc--CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 222 34567778888888888776321111 11 2222 367788888888875 456777888888888888
Q ss_pred cCCccCCc----cChhhhC--CCCCCeEeCcCccccc----cccccc-cCCCCCCEEECcCCcceeecC--hhhhcCCCC
Q 037514 519 SENSFLGS----LPTSIGN--LSHLRALYLSFNVMSR----IISENI-GQLSEPYMLDLYGNSWEGVIT--EKHFRNLSG 585 (636)
Q Consensus 519 s~n~~~~~----~p~~l~~--l~~L~~L~Ls~n~l~~----~~~~~~-~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~ 585 (636)
++|.+.+. ++..+.. +++|++|++++|.+++ .+|..+ .++++|++|++++|++++..+ ......+++
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 331 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHH
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhh
Confidence 88888765 4566643 8888889998888887 366666 567889999999998886553 333344455
Q ss_pred CCeeeCCCC
Q 037514 586 LDYLTISSS 594 (636)
Q Consensus 586 L~~L~ls~n 594 (636)
++..++...
T Consensus 332 ~~~~~l~~~ 340 (386)
T 2ca6_A 332 RGRGELDEL 340 (386)
T ss_dssp HTCCEECCC
T ss_pred cCcchhhhc
Confidence 555555443
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.4e-20 Score=181.90 Aligned_cols=177 Identities=21% Similarity=0.290 Sum_probs=99.5
Q ss_pred CCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCccc
Q 037514 411 SLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLE 490 (636)
Q Consensus 411 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~ 490 (636)
..++++++++.++ .+|..+. +.+++|++++|.+.+..+..+..+++|++|++++|++++..+..+.. +++|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~ 86 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD-----LTELG 86 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-----CTTCC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc-----CCcCC
Confidence 3455566665554 3444333 45666666666666555555556666666666666665544443322 24456
Q ss_pred EEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCc
Q 037514 491 TLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNS 570 (636)
Q Consensus 491 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 570 (636)
+|++++|++++..+..+..+++|++|+|++|++.+..+..|..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus 87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 66666666665444555566666666666666654444445556666666666666665555555566666666666666
Q ss_pred ceeecChhhhcCCCCCCeeeCCCCCC
Q 037514 571 WEGVITEKHFRNLSGLDYLTISSSNS 596 (636)
Q Consensus 571 l~~~~~~~~~~~l~~L~~L~ls~n~~ 596 (636)
+.+ ++...|..+++|++|++++|++
T Consensus 167 l~~-~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 167 LQS-VPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CSC-CCTTTTTTCTTCCEEECCSCCB
T ss_pred CCc-cCHHHHhCCCCCCEEEeeCCce
Confidence 553 4444455566666666666643
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.7e-20 Score=187.00 Aligned_cols=196 Identities=18% Similarity=0.263 Sum_probs=129.7
Q ss_pred CCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCC
Q 037514 358 TQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLT 437 (636)
Q Consensus 358 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 437 (636)
.+++|++|++++|.+... + .+..+ ++|++|++++|.+.+..+ +..+++|++|++++|++.+. ..+..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~~~~l--~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-GVQYL--NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGC--TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HcCCcCEEEeeCCCccCc-h-hhhcc--CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 345566666666655543 2 23444 667777777776655433 66777777777777776642 2466777777
Q ss_pred EEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEe
Q 037514 438 ALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLG 517 (636)
Q Consensus 438 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 517 (636)
+|++++|.+++..+ +..+++|++|++++|++++..+ +. .+++|+.|++++|++++. +. +..+++|+.|+
T Consensus 111 ~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-----l~--~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~ 179 (308)
T 1h6u_A 111 TLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-----LA--GLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLK 179 (308)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-----GG--GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred EEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc-----cc--CCCCccEEEccCCcCCCC-hh-hcCCCCCCEEE
Confidence 77777777776543 6777777777777777765433 22 236667777777777743 33 77777888888
Q ss_pred CcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecCh
Q 037514 518 LSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITE 577 (636)
Q Consensus 518 Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 577 (636)
+++|.+.+..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++ .|.
T Consensus 180 l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~-~~~ 234 (308)
T 1h6u_A 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN-QPV 234 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC-CCE
T ss_pred CCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec-CCe
Confidence 88887774433 6777788888888887777653 6777788888888887764 444
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.4e-20 Score=185.84 Aligned_cols=211 Identities=21% Similarity=0.319 Sum_probs=174.7
Q ss_pred cceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEEC
Q 037514 362 VFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDI 441 (636)
Q Consensus 362 L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 441 (636)
+..+.+..+.+.+.... ..+ ++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 21 ~~~~~l~~~~~~~~~~~--~~l--~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L 92 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTVTQ--ADL--DGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL 92 (308)
T ss_dssp HHHHHTTCSSTTSEECH--HHH--HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred HHHHHhCCCCcCceecH--HHc--CCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEc
Confidence 33445566666654432 234 7899999999999764 3 57889999999999999985544 899999999999
Q ss_pred CCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCC
Q 037514 442 GGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSEN 521 (636)
Q Consensus 442 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 521 (636)
++|.+++.. .+..+++|++|++++|++++..+ +. .+++|++|++++|++++..+ +..+++|+.|++++|
T Consensus 93 ~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~-----l~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 93 SGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP-----LA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA 161 (308)
T ss_dssp CSCCCSCCG--GGTTCTTCCEEECTTSCCCCCGG-----GT--TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred cCCcCCCch--hhcCCCCCCEEECCCCCCCCchh-----hc--CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCC
Confidence 999999864 58899999999999999986432 22 34889999999999995443 889999999999999
Q ss_pred ccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCc
Q 037514 522 SFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSL 598 (636)
Q Consensus 522 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~ 598 (636)
.+.+..+ +..+++|++|++++|++++..+ +..+++|++|++++|++.+ ++. +..+++|++|++++|++..
T Consensus 162 ~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 162 QVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-VSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc-ccc--ccCCCCCCEEEccCCeeec
Confidence 9986443 8999999999999999998755 8899999999999999986 443 7899999999999997643
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=4.9e-21 Score=193.99 Aligned_cols=224 Identities=19% Similarity=0.179 Sum_probs=185.1
Q ss_pred CCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcc-cCCCCCCCCCCCE
Q 037514 360 ASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGE-LSTSLPDCSRLTA 438 (636)
Q Consensus 360 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 438 (636)
..++.++++++.+. +..+.....+.++.+++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34789999999887 3444443337899999999999877665 55799999999999998765 7777889999999
Q ss_pred EECCCCCCCCCcchhhcCCCCCCeEeCcCC-cCCCc-hhhhHHhhhcCCCCcccEEEcccC-cCCCC-CchhhcCCC-CC
Q 037514 439 LDIGGNRFLQLPSTSMGNLCNLHSLDISYN-HITGE-IKELTNAFSACNVSTLETLDLASN-KLGGN-LPDSLGNLL-CL 513 (636)
Q Consensus 439 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~-~~~~l~~l~-~L 513 (636)
|++++|.+++..+..+..+++|++|++++| .+++. ++..+.. +++|++|++++| .+++. ++..+..++ +|
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~-----~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-----CSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-----CTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-----CCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 999999999877778999999999999999 67643 4443433 377899999999 88854 577788999 99
Q ss_pred CEEeCcCC--ccC-CccChhhhCCCCCCeEeCcCcc-ccccccccccCCCCCCEEECcCCcceeecCh--hhhcCCCCCC
Q 037514 514 EYLGLSEN--SFL-GSLPTSIGNLSHLRALYLSFNV-MSRIISENIGQLSEPYMLDLYGNSWEGVITE--KHFRNLSGLD 587 (636)
Q Consensus 514 ~~L~Ls~n--~~~-~~~p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~ 587 (636)
++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|.- ..+. ..+..+++|+
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD--IIPETLLELGEIPTLK 275 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT--CCGGGGGGGGGCTTCC
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC--CCHHHHHHHhcCCCCC
Confidence 99999999 455 4677788899999999999999 7777788899999999999999962 2222 2478899999
Q ss_pred eeeCCCC
Q 037514 588 YLTISSS 594 (636)
Q Consensus 588 ~L~ls~n 594 (636)
+|++++|
T Consensus 276 ~L~l~~~ 282 (336)
T 2ast_B 276 TLQVFGI 282 (336)
T ss_dssp EEECTTS
T ss_pred EEeccCc
Confidence 9999999
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.4e-20 Score=176.43 Aligned_cols=162 Identities=23% Similarity=0.233 Sum_probs=125.1
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhh
Q 037514 78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVV 157 (636)
Q Consensus 78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 157 (636)
+++++|++++|++++..+..|+++++|++|++++|++++++... +.++++|++|++++|.++.++. ..+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~Ls~n~l~~~~~--~~~ 96 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV---------FNKLTSLTYLNLSTNQLQSLPN--GVF 96 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT---------TTTCTTCCEEECCSSCCCCCCT--TTT
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh---------cCCCCCcCEEECCCCcCCccCH--hHh
Confidence 48899999999998777777888999999999999888765532 6778888888888888887743 457
Q ss_pred CCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCC
Q 037514 158 NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLR 237 (636)
Q Consensus 158 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 237 (636)
..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|+
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~ 168 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIR 168 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTH
T ss_pred cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHH
Confidence 788888888888888887777777888888888888888887655567778888888888886653 345677
Q ss_pred EEEcccccCccccchhhhccc
Q 037514 238 RLDLAINGFSGEKEQFIQTLS 258 (636)
Q Consensus 238 ~L~L~~n~~~~~~~~~l~~l~ 258 (636)
+|+++.|.++|.+|..++.++
T Consensus 169 ~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 169 YLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp HHHHHHHHCTTTBBCTTSSBC
T ss_pred HHHHHHHhCCceeeccCcccc
Confidence 777777777777776555444
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.3e-18 Score=162.99 Aligned_cols=179 Identities=26% Similarity=0.295 Sum_probs=148.9
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCC
Q 037514 81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNEL 160 (636)
Q Consensus 81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 160 (636)
+.++.+++.++ .+|..+ .++|++|++++|.+++++... +.++++|++|++++|.++.++. ..|..+
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~l~~n~l~~~~~--~~~~~l 75 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGV---------FDELTSLTQLYLGGNKLQSLPN--GVFNKL 75 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTT---------TTTCTTCSEEECCSSCCCCCCT--TTTTTC
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhh---------hcccccCcEEECCCCccCccCh--hhcCCC
Confidence 67888888887 455444 468999999999998876542 7899999999999999998854 568899
Q ss_pred CCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEE
Q 037514 161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLD 240 (636)
Q Consensus 161 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~ 240 (636)
++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|+++ .++...+..+++|++|+
T Consensus 76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEE
T ss_pred CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEE
Confidence 99999999999999888888999999999999999999977777899999999999999998 45544588999999999
Q ss_pred cccccCccccchhhhccccCCcccchhhc--cCcCcccccccccCCCC
Q 037514 241 LAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRMNGTISENIGQLAE 286 (636)
Q Consensus 241 L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~~~~~~~~l~~l~~ 286 (636)
+++|.+.+..+ .++.|+ .++++|.+|.+++.++.
T Consensus 155 l~~N~~~~~~~------------~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 155 LHDNPWDCTCP------------GIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCSCCBCCCTT------------TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ecCCCeecCCC------------CHHHHHHHHHhCCceeeccCccccC
Confidence 99998875433 555555 66677777777666554
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1.3e-19 Score=184.14 Aligned_cols=181 Identities=16% Similarity=0.090 Sum_probs=83.9
Q ss_pred CCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchh-hHHhhcCCCccE-EECccCcCCccCCcccCCCCCCc
Q 037514 336 FSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPD-WFWGVISQKLSV-IDLSNNKFFGGILSSLCSLPSLY 413 (636)
Q Consensus 336 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~-~~~~~~~~~L~~-L~ls~n~l~~~~~~~~~~l~~L~ 413 (636)
.++++|++++|+++...+.+|.++++|++|+|++|++.+.+|. +|.++ +++.+ +.+.+|+++...+..|..+++|+
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L--~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL--PKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC--TTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc--hhhhhhhcccCCcccccCchhhhhccccc
Confidence 3455555555555544444555555555555555555443332 23333 33332 34444555554455555555555
Q ss_pred EEEccCCcCCcccCCCCCCCCCCCEEECCC-CCCCCCcchhhcCCC-CCCeEeCcCCcCCCchhhhHHhhhcCCCCcccE
Q 037514 414 WLRLGGNNLSGELSTSLPDCSRLTALDIGG-NRFLQLPSTSMGNLC-NLHSLDISYNHITGEIKELTNAFSACNVSTLET 491 (636)
Q Consensus 414 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~ 491 (636)
+|++++|++.+..+..+....++..+++.+ +.+..+.+..|..+. .++.|++++|+++...+..+. ..+|++
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~------~~~L~~ 181 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN------GTQLDE 181 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST------TEEEEE
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc------ccchhH
Confidence 555555555544333444444455555533 344444444444432 344555555555432222211 123455
Q ss_pred EEccc-CcCCCCCchhhcCCCCCCEEeCcCCccC
Q 037514 492 LDLAS-NKLGGNLPDSLGNLLCLEYLGLSENSFL 524 (636)
Q Consensus 492 L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~~~ 524 (636)
|++++ |.++...++.|.++++|+.||+++|+++
T Consensus 182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp EECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred HhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 55543 3333222234455555555555555554
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=4.5e-19 Score=180.17 Aligned_cols=114 Identities=17% Similarity=0.174 Sum_probs=51.1
Q ss_pred CCCCCCCCEEecCCccCCCC-CChhhhhCCCCCCCE-EEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCC
Q 037514 131 LPDLSSSRYLHLEGMKLSKV-TNWLQVVNELPSLVE-LHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNI 208 (636)
Q Consensus 131 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l 208 (636)
|.++++|++|+|++|++.+. +. ++|.+++++++ +.+++|++..+.+.+|..+++|++|++++|.+....+..+...
T Consensus 50 f~~l~~L~~L~Ls~N~i~~~i~~--~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~ 127 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDVLEVIEA--DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127 (350)
T ss_dssp STTCTTCCEEEEECCTTCCEECT--TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB
T ss_pred HcCCCCCCEEECcCCCCCCccCh--hHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhccc
Confidence 44444444444444444322 11 23444444443 3334445555445555555555555555555554333334444
Q ss_pred CCCCEEeCcCC-cCCCCCCCCCCCCCC-CCCEEEcccccCc
Q 037514 209 STLVTLNLRSS-QLSGSIPKFPPGKMC-NLRRLDLAINGFS 247 (636)
Q Consensus 209 ~~L~~L~L~~n-~l~~~~p~~~~~~l~-~L~~L~L~~n~~~ 247 (636)
.++..+++.++ ++. .++...+..+. .++.|++++|.++
T Consensus 128 ~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 128 LQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp SSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC
T ss_pred chhhhhhhccccccc-cccccchhhcchhhhhhcccccccc
Confidence 44555555432 232 33332233332 3555555555554
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=5.5e-19 Score=166.62 Aligned_cols=133 Identities=19% Similarity=0.274 Sum_probs=71.3
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhh
Q 037514 78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVV 157 (636)
Q Consensus 78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 157 (636)
+++++|++++|.+++..+..|..+++|++|+|++|.++++.+.. |.++++|++|++++|.++.++. ..|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~---------~~~l~~L~~L~Ls~N~l~~l~~--~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA---------FQGLRSLNSLVLYGNKITELPK--SLF 100 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT---------TTTCSSCCEEECCSSCCCCCCT--TTT
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH---------hhCCcCCCEEECCCCcCCccCH--hHc
Confidence 46677777777766665556666667777777766666553322 5555555555555555554432 334
Q ss_pred CCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcC
Q 037514 158 NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQL 221 (636)
Q Consensus 158 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l 221 (636)
..+++|++|+|++|++.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 4455555555555555544444444455555555555544443333344444444444444443
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=4.3e-19 Score=167.34 Aligned_cols=161 Identities=22% Similarity=0.377 Sum_probs=95.7
Q ss_pred cEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEE
Q 037514 413 YWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETL 492 (636)
Q Consensus 413 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L 492 (636)
+.++++++.++ .+|..+. +++++|++++|.++++++..|..+++|+ +|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~-----------------------------~L 61 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLR-----------------------------RI 61 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCC-----------------------------EE
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCC-----------------------------EE
Confidence 34555555554 3343332 4555555555555555544454444444 45
Q ss_pred EcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcce
Q 037514 493 DLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWE 572 (636)
Q Consensus 493 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 572 (636)
+|++|++++..|..|.++++|++|+|++|++.+..+..|.++++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus 62 ~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 62 DLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp ECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 55555555444556666666666666666666544445566666777777777666666666666777777777777766
Q ss_pred eecChhhhcCCCCCCeeeCCCCCCCccccccccccc
Q 037514 573 GVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIA 608 (636)
Q Consensus 573 ~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~ 608 (636)
+ ++.+.|..+++|++|++++| ...|+|...|+.
T Consensus 142 ~-~~~~~~~~l~~L~~L~L~~N--~~~c~c~l~~l~ 174 (220)
T 2v9t_B 142 T-IAKGTFSPLRAIQTMHLAQN--PFICDCHLKWLA 174 (220)
T ss_dssp C-CCTTTTTTCTTCCEEECCSS--CEECSGGGHHHH
T ss_pred E-ECHHHHhCCCCCCEEEeCCC--CcCCCCccHHHH
Confidence 3 45555666777777777777 344455555554
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.5e-18 Score=169.67 Aligned_cols=192 Identities=25% Similarity=0.338 Sum_probs=149.4
Q ss_pred cceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEEC
Q 037514 362 VFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDI 441 (636)
Q Consensus 362 L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 441 (636)
+..+.+..+.+.+..+. ..+ ++|++|++++|.+... ..+..+++|++|++++|++++..+ +..+++|++|++
T Consensus 26 ~~~~~l~~~~~~~~~~~--~~l--~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l 97 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQ--NEL--NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHTTCSCTTSEECH--HHH--HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred HHHHHhcCCCcccccch--hhc--CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence 44455666666654433 233 6889999999988654 247778999999999999886544 888899999999
Q ss_pred CCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCC
Q 037514 442 GGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSEN 521 (636)
Q Consensus 442 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 521 (636)
++|.+++... +..+++|++|++++|++++. + .+.. +++|+.|++++|++++. ..+..+++|+.|++++|
T Consensus 98 ~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~~-~----~l~~--l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 98 DENKVKDLSS--LKDLKKLKSLSLEHNGISDI-N----GLVH--LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp CSSCCCCGGG--GTTCTTCCEEECTTSCCCCC-G----GGGG--CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred CCCcCCCChh--hccCCCCCEEECCCCcCCCC-h----hhcC--CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC
Confidence 9999887543 88899999999999998753 2 2222 37789999999999854 56888999999999999
Q ss_pred ccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecCh
Q 037514 522 SFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITE 577 (636)
Q Consensus 522 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 577 (636)
++.+..| +..+++|++|++++|.+++. + .+..+++|+.|++++|++.. .|.
T Consensus 167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~-~~~ 217 (291)
T 1h6t_A 167 QISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN-KPI 217 (291)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC-CCE
T ss_pred ccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC-Ccc
Confidence 9886554 88899999999999999875 3 48889999999999998874 444
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=3.5e-18 Score=168.57 Aligned_cols=173 Identities=21% Similarity=0.277 Sum_probs=129.2
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCCh
Q 037514 74 VYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNW 153 (636)
Q Consensus 74 ~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 153 (636)
+..+++|++|++++|.+... + .+..+++|++|++++|.+++++. +.++++|++|++++|.++..+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-----------l~~l~~L~~L~l~~n~l~~~~-- 106 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-----------LANLKNLGWLFLDENKVKDLS-- 106 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-----------GTTCTTCCEEECCSSCCCCGG--
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc-----------cccCCCCCEEECCCCcCCCCh--
Confidence 34567888999998888744 3 48888889999999888887653 778888888888888887753
Q ss_pred hhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCC
Q 037514 154 LQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKM 233 (636)
Q Consensus 154 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l 233 (636)
.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++.+. + ++..+
T Consensus 107 --~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~-~--~l~~l 177 (291)
T 1h6t_A 107 --SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V--PLAGL 177 (291)
T ss_dssp --GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G--GGTTC
T ss_pred --hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc-h--hhcCC
Confidence 477888888888888888764 4577788888888888888773 5677888888888888887743 2 26777
Q ss_pred CCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCcc
Q 037514 234 CNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKG 299 (636)
Q Consensus 234 ~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 299 (636)
++|++|++++|.+++. + .+..+++|+.|++++|++..
T Consensus 178 ~~L~~L~L~~N~i~~l----------------------------~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 178 TKLQNLYLSKNHISDL----------------------------R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCCEEECCSSCCCBC----------------------------G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CccCEEECCCCcCCCC----------------------------h-hhccCCCCCEEECcCCcccC
Confidence 7888888887776632 1 13445677777777777654
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.1e-18 Score=177.99 Aligned_cols=155 Identities=29% Similarity=0.300 Sum_probs=81.8
Q ss_pred CCEEECCCCCCCCCcchhhc-CCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCC
Q 037514 436 LTALDIGGNRFLQLPSTSMG-NLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLE 514 (636)
Q Consensus 436 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 514 (636)
+++|++++|.+++..+..+. .+++|++|++++|++++..+..+. .+++|++|+|++|++++..+..|.++++|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-----PVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-----TCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc-----CCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 44444444444444444443 444455555555544433333222 123445555555555544444555666666
Q ss_pred EEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccc---cCCCCCCEEECcCCcceeecChhhhcCCCC--CCee
Q 037514 515 YLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENI---GQLSEPYMLDLYGNSWEGVITEKHFRNLSG--LDYL 589 (636)
Q Consensus 515 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~--L~~L 589 (636)
.|+|++|++.+..|..|.++++|++|+|++|+++...+..| ..+++|+.|+|++|++. .+|...+..++. ++.|
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTE
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceE
Confidence 66666666665555566666666666666666665544444 44666666666666665 355555555554 3566
Q ss_pred eCCCCCC
Q 037514 590 TISSSNS 596 (636)
Q Consensus 590 ~ls~n~~ 596 (636)
++++|+.
T Consensus 195 ~l~~N~~ 201 (361)
T 2xot_A 195 YLHNNPL 201 (361)
T ss_dssp ECCSSCE
T ss_pred EecCCCc
Confidence 6666633
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=3.5e-18 Score=182.53 Aligned_cols=182 Identities=29% Similarity=0.352 Sum_probs=100.0
Q ss_pred CcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEE
Q 037514 361 SVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALD 440 (636)
Q Consensus 361 ~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 440 (636)
+++.|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~----~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP----PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC----TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCc-cCHhHc----CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 45555555555544 222111 45666666666655 233 334566666666666654 444 433 666666
Q ss_pred CCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcC
Q 037514 441 IGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSE 520 (636)
Q Consensus 441 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 520 (636)
+++|.+++++. .+++|+.|++++|++++ +|. .+++|++|++++|++++ +|. +. ++|+.|+|++
T Consensus 127 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~--------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 127 VDNNQLTMLPE----LPALLEYINADNNQLTM-LPE--------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST 189 (571)
T ss_dssp CCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred CCCCcCCCCCC----cCccccEEeCCCCccCc-CCC--------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence 66666665433 45666666666666654 222 12555666666666664 444 43 6666666666
Q ss_pred CccCCccChhhhCCCCC-------CeEeCcCccccccccccccCCCCCCEEECcCCcceeecCh
Q 037514 521 NSFLGSLPTSIGNLSHL-------RALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITE 577 (636)
Q Consensus 521 n~~~~~~p~~l~~l~~L-------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 577 (636)
|.++ .+|. +.. +| +.|++++|+++. +|..+..+++|+.|++++|++++.+|.
T Consensus 190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp SCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred CCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 6666 4444 333 45 666666666664 344455566666666666666665555
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=1.1e-17 Score=178.74 Aligned_cols=180 Identities=24% Similarity=0.289 Sum_probs=149.6
Q ss_pred CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514 386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI 465 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 465 (636)
.+++.|++++|.+++ +|..+ +++|++|++++|+++ .+| ..+++|++|++++|.+++++. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence 489999999999987 55544 389999999999998 566 457899999999999999655 544 9999999
Q ss_pred cCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCc
Q 037514 466 SYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFN 545 (636)
Q Consensus 466 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n 545 (636)
++|++++ +|. .+++|+.|++++|++++ +|. .+++|+.|+|++|.+.+ +|. |. ++|+.|++++|
T Consensus 128 s~N~l~~-lp~--------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 128 DNNQLTM-LPE--------LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp CSSCCSC-CCC--------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS
T ss_pred CCCcCCC-CCC--------cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC
Confidence 9999987 443 24789999999999995 665 57899999999999986 776 65 89999999999
Q ss_pred cccccccccccCCCCC-------CEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcc
Q 037514 546 VMSRIISENIGQLSEP-------YMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLV 599 (636)
Q Consensus 546 ~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~ 599 (636)
+++. +|. +.. +| +.|++++|+++ .+|...+. +++|+.|++++|+++..
T Consensus 191 ~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 191 LLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSSCCHH
T ss_pred CCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCcCCCc
Confidence 9995 444 544 67 99999999998 58987555 99999999999987643
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=6.5e-18 Score=159.28 Aligned_cols=155 Identities=21% Similarity=0.219 Sum_probs=81.3
Q ss_pred EEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcc-hhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEE
Q 037514 414 WLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPS-TSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETL 492 (636)
Q Consensus 414 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L 492 (636)
.+++++|.++ .+|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|++++..+..+.. +++|++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----l~~L~~L 86 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----ASGVNEI 86 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----CTTCCEE
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----CCCCCEE
Confidence 4555555554 2343332 234556666665555432 33455555555555555555433332221 2344555
Q ss_pred EcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcce
Q 037514 493 DLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWE 572 (636)
Q Consensus 493 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 572 (636)
++++|++++..+..|.++++|++|+|++|++.+..|..|..+++|++|++++|++++..|..|..+++|++|++++|++.
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55555555444455555555666666666555555555555555666666656555555555555555555555555555
Q ss_pred eecC
Q 037514 573 GVIT 576 (636)
Q Consensus 573 ~~~~ 576 (636)
+..+
T Consensus 167 c~c~ 170 (220)
T 2v70_A 167 CNCY 170 (220)
T ss_dssp CSGG
T ss_pred CCCc
Confidence 4433
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=6.7e-18 Score=160.32 Aligned_cols=136 Identities=24% Similarity=0.256 Sum_probs=88.8
Q ss_pred CCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCc
Q 037514 102 SNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPF 181 (636)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 181 (636)
++|++|++++|.++++.+.. +.++++|++|++++|.++.++. ..|..+++|++|+|++|++++..+..|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~---------~~~l~~L~~L~L~~N~l~~i~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGV---------FDSLINLKELYLGSNQLGALPV--GVFDSLTQLTVLDLGTNQLTVLPSAVF 108 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTT---------TTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCEEEcCCCccCccCHHH---------hhCccCCcEEECCCCCCCCcCh--hhcccCCCcCEEECCCCcCCccChhHh
Confidence 44444444444444433221 4444455555555555544432 356667777777777777777666677
Q ss_pred cCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCcccc
Q 037514 182 LNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEK 250 (636)
Q Consensus 182 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~ 250 (636)
..+++|++|++++|.++. +|..+..+++|++|++++|++. .+|...+..+++|+.|++++|.+.+..
T Consensus 109 ~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 777888888888887774 6777788888888888888877 444444777888888888888877543
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=160.68 Aligned_cols=162 Identities=18% Similarity=0.239 Sum_probs=138.1
Q ss_pred CCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhh-hHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCC
Q 037514 436 LTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKE-LTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLE 514 (636)
Q Consensus 436 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 514 (636)
-+++++++|.++.++.. + ...+++|++++|++++..+. .+.. +++|++|++++|++++..+..|.++++|+
T Consensus 13 ~~~l~~s~n~l~~iP~~-~--~~~~~~L~L~~N~l~~~~~~~~~~~-----l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEH-I--PQYTAELRLNNNEFTVLEATGIFKK-----LPQLRKINFSNNKITDIEEGAFEGASGVN 84 (220)
T ss_dssp TTEEECCSSCCSSCCSC-C--CTTCSEEECCSSCCCEECCCCCGGG-----CTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCEeEeCCCCcccCccC-C--CCCCCEEEcCCCcCCccCchhhhcc-----CCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence 35899999999987653 3 34679999999999876443 3332 37789999999999987788999999999
Q ss_pred EEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514 515 YLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSS 594 (636)
Q Consensus 515 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n 594 (636)
+|+|++|.+.+..+..|.++++|++|++++|++++..|..|..+++|++|++++|++++..| ..|..+++|++|++++|
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCc
Confidence 99999999998888889999999999999999999999999999999999999999996444 56899999999999999
Q ss_pred CCCccccccccccc
Q 037514 595 NSSLVFNIRHDWIA 608 (636)
Q Consensus 595 ~~~~~~~~~~~~~~ 608 (636)
+ ..|+|...|+.
T Consensus 164 ~--l~c~c~l~~l~ 175 (220)
T 2v70_A 164 P--FNCNCYLAWLG 175 (220)
T ss_dssp C--EECSGGGHHHH
T ss_pred C--CcCCCchHHHH
Confidence 4 55566556654
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=3.9e-17 Score=155.01 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=127.5
Q ss_pred cccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccC
Q 037514 68 SPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKL 147 (636)
Q Consensus 68 ~~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 147 (636)
..+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.++.++... +.++++|++|++++|.+
T Consensus 32 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~---------~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV---------FDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------TTTCTTCCEEECCSSCC
T ss_pred CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh---------cccCCCcCEEECCCCcC
Confidence 45666554 79999999999999998999999999999999999998876543 78999999999999999
Q ss_pred CCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCC
Q 037514 148 SKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGS 224 (636)
Q Consensus 148 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~ 224 (636)
+.++. ..|..+++|++|+|++|++. .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 101 ~~l~~--~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 101 TVLPS--AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCT--TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CccCh--hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 98854 57899999999999999998 5677889999999999999999987777899999999999999998754
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.7e-17 Score=179.42 Aligned_cols=189 Identities=25% Similarity=0.349 Sum_probs=120.1
Q ss_pred cceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEEC
Q 037514 362 VFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDI 441 (636)
Q Consensus 362 L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 441 (636)
+..+.++.+.+.+..+. ..+ +.|+.|++++|.+... + .+..+++|+.|+|++|++.+..+ +..+++|++|+|
T Consensus 23 l~~l~l~~~~i~~~~~~--~~L--~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQ--NEL--NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHTTCSCTTSEECH--HHH--TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHhccCCCcccccch--hcC--CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 34445555555544332 233 5667777777666543 2 35666777777777777664433 666777777777
Q ss_pred CCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCC
Q 037514 442 GGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSEN 521 (636)
Q Consensus 442 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 521 (636)
++|.+.+.+ .+..+++|+.|++++|++.+. +. +.. +++|+.|+|++|++++. ..+..+++|+.|+|++|
T Consensus 95 s~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l-~~----l~~--l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 95 DENKIKDLS--SLKDLKKLKSLSLEHNGISDI-NG----LVH--LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CSSCCCCCT--TSTTCTTCCEEECTTSCCCCC-GG----GGG--CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred cCCCCCCCh--hhccCCCCCEEEecCCCCCCC-cc----ccC--CCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence 777776643 366677777777777776642 21 222 36667777777777643 45677777777777777
Q ss_pred ccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCccee
Q 037514 522 SFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEG 573 (636)
Q Consensus 522 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 573 (636)
.+.+..| +..+++|+.|+|++|++++. ..+..+++|+.|+|++|++.+
T Consensus 164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 164 QISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred cCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 7775555 67777777777777777664 346777777777777777664
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=4.6e-18 Score=157.51 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=132.2
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCCh
Q 037514 74 VYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNW 153 (636)
Q Consensus 74 ~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 153 (636)
..++++|++|++++|.++ .+| .+..+++|++|++++|.++..+. +..+++|++|++++|.++.. .
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~~-----------l~~l~~L~~L~l~~n~l~~~--~ 104 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYNP-----------ISGLSNLERLRIMGKDVTSD--K 104 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCGG-----------GTTCTTCCEEEEECTTCBGG--G
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcchh-----------hhcCCCCCEEEeECCccCcc--c
Confidence 356789999999999998 556 69999999999999998876543 88999999999999999874 2
Q ss_pred hhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCc-CCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCC
Q 037514 154 LQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDN-FNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGK 232 (636)
Q Consensus 154 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 232 (636)
+..++.+++|++|++++|.+++..+..+..+++|++|++++|. +.. +| .+..+++|++|++++|++++ ++ ++..
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~--~l~~ 179 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR--GIED 179 (197)
T ss_dssp SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT--TGGG
T ss_pred ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH--Hhcc
Confidence 3478899999999999999998778889999999999999998 665 55 68999999999999999984 44 5788
Q ss_pred CCCCCEEEcccccCcc
Q 037514 233 MCNLRRLDLAINGFSG 248 (636)
Q Consensus 233 l~~L~~L~L~~n~~~~ 248 (636)
+++|++|++++|++.+
T Consensus 180 l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 180 FPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSCCEEEECBC----
T ss_pred CCCCCEEEeeCcccCC
Confidence 9999999999999764
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.1e-17 Score=170.53 Aligned_cols=176 Identities=23% Similarity=0.204 Sum_probs=97.0
Q ss_pred ceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccC-CCCCCcEEEccCCcCCcccCCCCCCCCCCCEEEC
Q 037514 363 FKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLC-SLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDI 441 (636)
Q Consensus 363 ~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 441 (636)
+.++++++.+... |..+. ..++.|++++|++++..+..+. .+++|++|++++|++.+..+..|..+++|++|+|
T Consensus 21 ~~l~c~~~~l~~i-P~~~~----~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSLP----SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSC-CSSCC----TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCcc-CccCC----CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 4566666666543 22221 4466666666666655555555 5666666666666666555555666666666666
Q ss_pred CCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhh---cCCCCCCEEeC
Q 037514 442 GGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSL---GNLLCLEYLGL 518 (636)
Q Consensus 442 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~L 518 (636)
++|+++.+++..|..+++|++|++++|++++..+..+.. +++|+.|+|++|++++..+..+ ..+++|+.|+|
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-----l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-----MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-----CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC-----cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 666666665555666666666666666665444443322 2445666666665553333333 34555555555
Q ss_pred cCCccCCccChhhhCCCC--CCeEeCcCcccc
Q 037514 519 SENSFLGSLPTSIGNLSH--LRALYLSFNVMS 548 (636)
Q Consensus 519 s~n~~~~~~p~~l~~l~~--L~~L~Ls~n~l~ 548 (636)
++|++.+..+..+..++. ++.|++++|.+.
T Consensus 171 ~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 555555444444555544 255555555544
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=1.1e-17 Score=162.19 Aligned_cols=156 Identities=19% Similarity=0.264 Sum_probs=135.6
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCC
Q 037514 73 FVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTN 152 (636)
Q Consensus 73 ~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 152 (636)
.+..+++|++|++++|.++. ++ .++.+++|++|++++|.++++++ +.++++|++|++++|+++.++.
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~-----------l~~l~~L~~L~L~~N~l~~l~~ 102 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP-----------LKDLTKLEELSVNRNRLKNLNG 102 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-----------GTTCSSCCEEECCSSCCSCCTT
T ss_pred chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh-----------hccCCCCCEEECCCCccCCcCc
Confidence 56788999999999999984 55 69999999999999999998764 8899999999999999999854
Q ss_pred hhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCC
Q 037514 153 WLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGK 232 (636)
Q Consensus 153 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 232 (636)
+.. ++|++|++++|++++. ..+..+++|++|++++|++++. + .+..+++|++|++++|++.+. ..+..
T Consensus 103 ----~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~---~~l~~ 170 (263)
T 1xeu_A 103 ----IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT---GGLTR 170 (263)
T ss_dssp ----CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC---TTSTT
T ss_pred ----ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch---HHhcc
Confidence 333 9999999999999875 3588999999999999999984 4 689999999999999999854 34789
Q ss_pred CCCCCEEEcccccCccccchh
Q 037514 233 MCNLRRLDLAINGFSGEKEQF 253 (636)
Q Consensus 233 l~~L~~L~L~~n~~~~~~~~~ 253 (636)
+++|+.|++++|.+.+.....
T Consensus 171 l~~L~~L~l~~N~~~~~~~~~ 191 (263)
T 1xeu_A 171 LKKVNWIDLTGQKCVNEPVKY 191 (263)
T ss_dssp CCCCCEEEEEEEEEECCCEEC
T ss_pred CCCCCEEeCCCCcccCCcccc
Confidence 999999999999988764433
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.4e-17 Score=154.16 Aligned_cols=156 Identities=15% Similarity=0.295 Sum_probs=124.2
Q ss_pred cccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCC
Q 037514 97 NIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFP 176 (636)
Q Consensus 97 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 176 (636)
..+.+++|++|++++|.+++++. +..+++|++|++++|.++.. ..+..+++|++|++++|.+++.
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l~~-----------l~~l~~L~~L~l~~n~~~~~----~~l~~l~~L~~L~l~~n~l~~~ 103 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDLTG-----------IEYAHNIKDLTINNIHATNY----NPISGLSNLERLRIMGKDVTSD 103 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCCTT-----------GGGCTTCSEEEEESCCCSCC----GGGTTCTTCCEEEEECTTCBGG
T ss_pred ChhhcCCccEEeccCCCccChHH-----------HhcCCCCCEEEccCCCCCcc----hhhhcCCCCCEEEeECCccCcc
Confidence 34778899999999999987652 78889999999999977665 3688899999999999999887
Q ss_pred CCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCc-CCCCCCCCCCCCCCCCCEEEcccccCccccchhhh
Q 037514 177 QSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQ-LSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQ 255 (636)
Q Consensus 177 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~ 255 (636)
.+..+..+++|++|++++|.+++..|..+..+++|++|++++|. +. .+| ++..+++|++|++++|.+++..
T Consensus 104 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~~~----- 175 (197)
T 4ezg_A 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHDYR----- 175 (197)
T ss_dssp GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCCCT-----
T ss_pred cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcChH-----
Confidence 78889999999999999999998788889999999999999998 54 554 3678888888888888776421
Q ss_pred ccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCcc
Q 037514 256 TLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKG 299 (636)
Q Consensus 256 ~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 299 (636)
.+..+++|++|++++|++.+
T Consensus 176 ------------------------~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 ------------------------GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ------------------------TGGGCSSCCEEEECBC----
T ss_pred ------------------------HhccCCCCCEEEeeCcccCC
Confidence 23445677888888777653
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=3.8e-17 Score=176.63 Aligned_cols=173 Identities=27% Similarity=0.318 Sum_probs=106.5
Q ss_pred cCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCC
Q 037514 357 KTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRL 436 (636)
Q Consensus 357 ~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 436 (636)
..+++|+.|++++|.+.... .+..+ ++|+.|++++|++.+..+ +..+++|+.|+|++|.+.+ + ..+..+++|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~--~l~~l--~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L 111 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ--GIQYL--PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKL 111 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT--TGGGC--TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTC
T ss_pred hcCCCCCEEECcCCCCCCCh--HHccC--CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCC
Confidence 34556666666666665432 24444 666666666666655433 5666667777777766653 2 246666777
Q ss_pred CEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEE
Q 037514 437 TALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYL 516 (636)
Q Consensus 437 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 516 (636)
++|+|++|.+.+.. .+..+++|+.|+|++|++++. . .+. .+++|+.|+|++|.+.+..| +..+++|+.|
T Consensus 112 ~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~---~l~--~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 112 KSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--T---VLS--RLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp CEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--G---GGG--SCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--h---hhc--ccCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence 77777777766642 366667777777777776643 1 122 23666777777777765444 6667777777
Q ss_pred eCcCCccCCccChhhhCCCCCCeEeCcCcccccc
Q 037514 517 GLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRI 550 (636)
Q Consensus 517 ~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 550 (636)
+|++|.+.+ +| .+..+++|+.|+|++|++.+.
T Consensus 181 ~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 181 YLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred ECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 777777664 23 466677777777777776654
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=3.9e-17 Score=158.41 Aligned_cols=167 Identities=23% Similarity=0.254 Sum_probs=82.2
Q ss_pred CCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEE
Q 037514 360 ASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTAL 439 (636)
Q Consensus 360 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 439 (636)
.++..++++++.+.+.. .+..+ ++|++|++++|.++.. + .+..+++|++|++++|++++..+ +..+++|++|
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l--~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKEL--SGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHH--TTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHhcCCCccccc--chhhc--CcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 34555566666555443 23344 5566666666655432 2 34455555555555555543322 4555555555
Q ss_pred ECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCc
Q 037514 440 DIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLS 519 (636)
Q Consensus 440 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 519 (636)
++++|++++.++ +.. ++|++|++++| ++++ ++ .+..+++|+.|+++
T Consensus 91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N-----------------------------~l~~-~~-~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 91 SVNRNRLKNLNG--IPS-ACLSRLFLDNN-----------------------------ELRD-TD-SLIHLKNLEILSIR 136 (263)
T ss_dssp ECCSSCCSCCTT--CCC-SSCCEEECCSS-----------------------------CCSB-SG-GGTTCTTCCEEECT
T ss_pred ECCCCccCCcCc--ccc-CcccEEEccCC-----------------------------ccCC-Ch-hhcCcccccEEECC
Confidence 555555554332 111 44444555444 4442 12 34455555555555
Q ss_pred CCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcce
Q 037514 520 ENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWE 572 (636)
Q Consensus 520 ~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 572 (636)
+|++.+. + .+..+++|++|++++|++++. ..+..+++|+.|++++|++.
T Consensus 137 ~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 137 NNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred CCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 5555432 2 344555555555555555544 34455555555555555554
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=3.4e-19 Score=191.57 Aligned_cols=122 Identities=24% Similarity=0.320 Sum_probs=75.7
Q ss_pred CCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCe
Q 037514 460 LHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRA 539 (636)
Q Consensus 460 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~ 539 (636)
|+.|++++|.+++ +|. +.. +++|+.|++++|+++ .+|..++.+++|+.|+|++|.+++ +| .+..+++|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~-----l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~ 512 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQ-----LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQE 512 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGG-----GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCE
T ss_pred ceEEEecCCCCCC-CcC-ccc-----cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcE
Confidence 5555555555554 232 222 245566666666666 556667777777777777777764 55 5667777777
Q ss_pred EeCcCccccccc-cccccCCCCCCEEECcCCcceeecCh--hhhcCCCCCCeeeC
Q 037514 540 LYLSFNVMSRII-SENIGQLSEPYMLDLYGNSWEGVITE--KHFRNLSGLDYLTI 591 (636)
Q Consensus 540 L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~l 591 (636)
|++++|++++.. |..+..+++|+.|++++|++++..|. ..+..+++|+.|++
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 777777777665 66677777777777777777654332 23344667776653
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=2.7e-16 Score=144.70 Aligned_cols=108 Identities=29% Similarity=0.351 Sum_probs=64.5
Q ss_pred cccEEEcccCcCCCCCch-hhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEEC
Q 037514 488 TLETLDLASNKLGGNLPD-SLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDL 566 (636)
Q Consensus 488 ~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 566 (636)
++++|++++|++++..+. .+..+++|++|+|++|++.+..|..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 345555555555543332 3556666666666666666555666666666666666666666666666666666666666
Q ss_pred cCCcceeecChhhhcCCCCCCeeeCCCCCC
Q 037514 567 YGNSWEGVITEKHFRNLSGLDYLTISSSNS 596 (636)
Q Consensus 567 ~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~ 596 (636)
++|++++..|. .|..+++|++|++++|++
T Consensus 110 ~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YDNQISCVMPG-SFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSSCCCEECTT-SSTTCTTCCEEECTTCCB
T ss_pred CCCcCCeeCHH-HhhcCCCCCEEEeCCCCc
Confidence 66666654343 355666666666666633
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=3.1e-16 Score=144.25 Aligned_cols=138 Identities=25% Similarity=0.355 Sum_probs=108.8
Q ss_pred CeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeE
Q 037514 461 HSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRAL 540 (636)
Q Consensus 461 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L 540 (636)
+.+++++|.++. +|..+ .++|++|++++|+++ .+|..+.++++|+.|+|++|.+++..+..|.++++|++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~-------~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI-------PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83 (193)
T ss_dssp TEEECTTSCCSS-CCSCC-------CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCCCc-CCCCC-------CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence 456666666653 23211 145688888888887 667788889999999999999988777888999999999
Q ss_pred eCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccccccccccCc
Q 037514 541 YLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPF 610 (636)
Q Consensus 541 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~ 610 (636)
++++|++++..+..|..+++|++|++++|++. .+|.+.|..+++|+.|++++| ...|+|...|+..|
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N--~~~C~c~l~~l~~~ 150 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN--PLYCDCNMQWLSDW 150 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSS--CEECSGGGHHHHHH
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCC--CeecCCcCHHHHHH
Confidence 99999999888888999999999999999988 577777888999999999999 55566666666543
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=1.1e-17 Score=168.33 Aligned_cols=102 Identities=16% Similarity=0.091 Sum_probs=63.9
Q ss_pred CCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCc-EEEccCCcCCcccCCCCCCCCCCC
Q 037514 359 QASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLY-WLRLGGNNLSGELSTSLPDCSRLT 437 (636)
Q Consensus 359 ~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~ 437 (636)
+++|+.+++++|.++...+.+|.++ .+|+++++.+| +......+|..+++|+ .+++.+ .++...+.+|.+|++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~--~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQK--KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTC--TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCC--CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 5666666666666665555556555 56666666665 5555555666666666 666666 55544556666666666
Q ss_pred EEECCCCCCCCCcchhhcCCCCCCeEe
Q 037514 438 ALDIGGNRFLQLPSTSMGNLCNLHSLD 464 (636)
Q Consensus 438 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ 464 (636)
+++++.|.++.+.+.+|.++++|+.++
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEeCCCccCccchhhhcCCcchhhhc
Confidence 666666666666666666666666654
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1.9e-16 Score=159.45 Aligned_cols=197 Identities=13% Similarity=0.069 Sum_probs=114.2
Q ss_pred CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCC----CCCCcchhhcCCCCCC
Q 037514 386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNR----FLQLPSTSMGNLCNLH 461 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~ 461 (636)
++|+.+++.+ .++.....+|..+++|+.+++.+|.+....+.+|.++.++.++....+. ...+...+|..+..|+
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence 5566666655 5555455555566666666666665554455555555555555544421 1222222333333333
Q ss_pred -eEeCcCCcCCCchhhhHHh------------------------hhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEE
Q 037514 462 -SLDISYNHITGEIKELTNA------------------------FSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYL 516 (636)
Q Consensus 462 -~L~l~~n~l~~~~~~~~~~------------------------~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 516 (636)
.+.+... +.++..+.. +.. .+++|+++++++|+++...+.+|.+|++|+.+
T Consensus 180 ~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~-~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 180 TTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRD-YMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHH-HCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred eeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHH-hcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 2222211 111111110 000 13667777777777775555667777777777
Q ss_pred eCcCCccCCccChhhhCCCCCC-eEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeee
Q 037514 517 GLSENSFLGSLPTSIGNLSHLR-ALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLT 590 (636)
Q Consensus 517 ~Ls~n~~~~~~p~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 590 (636)
++.+| +....+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|++. .++..+|.++++|+.++
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence 77776 5555566777777777 777776 666666777777777777777777776 46777777777777765
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=2.4e-18 Score=184.93 Aligned_cols=202 Identities=17% Similarity=0.078 Sum_probs=133.8
Q ss_pred CCCccEEEccCCCCCcCCChhhcCCCCcceecccccc-------------CCCcchhhHHhhcCCCccEEE-CccCcCCc
Q 037514 335 PFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAA-------------ISDTIPDWFWGVISQKLSVID-LSNNKFFG 400 (636)
Q Consensus 335 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~-------------~~~~~~~~~~~~~~~~L~~L~-ls~n~l~~ 400 (636)
.+.|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+ ++|+.|+ ++.|.+
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l--~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF--STLKAVDPMRAAYL-- 422 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH--HHHHHHCGGGHHHH--
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH--HhcccCcchhhccc--
Confidence 345555555555554 456667777777777765554 344455555555 5555555 444432
Q ss_pred cCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHh
Q 037514 401 GILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNA 480 (636)
Q Consensus 401 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 480 (636)
..|+.+.+.+|.+....+ ..|++|++++|.+++++. ++.+++|+.|++++|+++ .+|..+..
T Consensus 423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCCCcC--ccccccCcEeecCccccc-ccchhhhc
Confidence 123333444444442211 247788888888887543 778888888888888887 55554443
Q ss_pred hhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCcc-ChhhhCCCCCCeEeCcCccccccccc---ccc
Q 037514 481 FSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSL-PTSIGNLSHLRALYLSFNVMSRIISE---NIG 556 (636)
Q Consensus 481 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~~~---~~~ 556 (636)
+++|+.|+|++|++++ +| .++.+++|+.|+|++|++.+.. |..+..+++|+.|++++|++++.+|. .+.
T Consensus 485 -----l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 557 (567)
T 1dce_A 485 -----LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557 (567)
T ss_dssp -----CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHH
T ss_pred -----CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHH
Confidence 3667888888888885 56 7888888888888888888766 88888888888888888888876553 234
Q ss_pred CCCCCCEEEC
Q 037514 557 QLSEPYMLDL 566 (636)
Q Consensus 557 ~l~~L~~L~L 566 (636)
.+++|+.|++
T Consensus 558 ~lp~L~~L~l 567 (567)
T 1dce_A 558 MLPSVSSILT 567 (567)
T ss_dssp HCTTCSEEEC
T ss_pred HCcccCccCC
Confidence 5788888764
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=4.7e-16 Score=139.97 Aligned_cols=135 Identities=20% Similarity=0.216 Sum_probs=112.6
Q ss_pred CCCCEEeCCCCCCC-CCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhh
Q 037514 78 KKLKLLDLSESSFS-GMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQV 156 (636)
Q Consensus 78 ~~L~~L~Ls~~~i~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 156 (636)
++|++|++++|.++ +.+|..+..+++|++|++++|.++++.. +..+++|++|++++|.++.. ++..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~l~~L~~L~Ls~N~l~~~--~~~~ 90 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-----------LPKLPKLKKLELSENRIFGG--LDML 90 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSS-----------CCCCSSCCEEEEESCCCCSC--CCHH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhh-----------hccCCCCCEEECcCCcCchH--HHHH
Confidence 68999999999998 7888889999999999999999987621 88899999999999999885 2356
Q ss_pred hCCCCCCCEEEccCCcCCCCCC-cCccCCCCCCEEEccCCcCCcCCC---ccccCCCCCCEEeCcCCcCCCCCC
Q 037514 157 VNELPSLVELHLSNCQLNFPQS-LPFLNFTSLSILELSYDNFNSQIP---QWLFNISTLVTLNLRSSQLSGSIP 226 (636)
Q Consensus 157 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p---~~l~~l~~L~~L~L~~n~l~~~~p 226 (636)
+..+++|++|++++|.+++... ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .+|
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~ 163 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAP 163 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCC
T ss_pred HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcc
Confidence 7778999999999999887533 678888999999999998887544 47788888999998888876 444
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=1.7e-15 Score=139.32 Aligned_cols=130 Identities=24% Similarity=0.297 Sum_probs=67.7
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCC
Q 037514 81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNEL 160 (636)
Q Consensus 81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 160 (636)
++++++++++. .+|..+.. +|++|++++|.+++++.. ..++.+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~----------------------------------~~~~~l 53 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSD----------------------------------GLFGRL 53 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCS----------------------------------CSGGGC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCc----------------------------------cccccC
Confidence 56777777775 45554433 677777777766655431 123444
Q ss_pred CCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEE
Q 037514 161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLD 240 (636)
Q Consensus 161 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~ 240 (636)
++|++|+|++|++++..|..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..|. .+..+++|++|+
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~ 132 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLN 132 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEE
Confidence 4444444444444444444455555555555555555544444445555555555555555433332 244555555555
Q ss_pred cccccCcc
Q 037514 241 LAINGFSG 248 (636)
Q Consensus 241 L~~n~~~~ 248 (636)
+++|.+.+
T Consensus 133 L~~N~l~c 140 (192)
T 1w8a_A 133 LASNPFNC 140 (192)
T ss_dssp CTTCCBCC
T ss_pred eCCCCccC
Confidence 55555544
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=2.1e-16 Score=175.32 Aligned_cols=192 Identities=22% Similarity=0.229 Sum_probs=113.6
Q ss_pred EEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccC
Q 037514 340 QMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGG 419 (636)
Q Consensus 340 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~ 419 (636)
.+++..+.+. ..+..+..+..|+.|+|++|.+.. +|..+..+ ++|++|+|++|.++ .+|..+..+++|++|+|++
T Consensus 205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l--~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKY--DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH 279 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCSC-CCGGGGGC--CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTT
T ss_pred Ccccccccee-cChhhhccCCCCcEEECCCCCCCC-CChhhcCC--CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcC
Confidence 3344444443 456677888888888888888874 44444455 88999999999887 6778888899999999999
Q ss_pred CcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcC
Q 037514 420 NNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKL 499 (636)
Q Consensus 420 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 499 (636)
|.++ .+|..+..+++|++|+|++|.++.++. .|+.+++|++|+|++|++++.+|..+..... .+..+++++|.+
T Consensus 280 N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~----~~~~l~l~~N~l 353 (727)
T 4b8c_D 280 NRLT-SLPAELGSCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQFLKILTEKSV----TGLIFYLRDNRP 353 (727)
T ss_dssp SCCS-SCCSSGGGGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSHHHHHHHHHHH----HHHHHHHHHCCC
T ss_pred CcCC-ccChhhcCCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCCChHHHhhcch----hhhHHhhccCcc
Confidence 9988 678888999999999999999986654 4889999999999999999888887755432 123478889998
Q ss_pred CCCCchhhcCCCCCCEEeCcCC--------ccCCccChhhhCCCCCCeEeCcCcccc
Q 037514 500 GGNLPDSLGNLLCLEYLGLSEN--------SFLGSLPTSIGNLSHLRALYLSFNVMS 548 (636)
Q Consensus 500 ~~~~~~~l~~l~~L~~L~Ls~n--------~~~~~~p~~l~~l~~L~~L~Ls~n~l~ 548 (636)
++.+|. .|+.|++++| .+.+..+..+.++..++...+++|.+.
T Consensus 354 ~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 354 EIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCCCCC------C-----------------------------------------CCC
T ss_pred cCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 877775 4556667766 233333344455666666777777664
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=9e-16 Score=135.07 Aligned_cols=128 Identities=20% Similarity=0.209 Sum_probs=106.2
Q ss_pred CCCCEEeCCCCCCC-CCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhh
Q 037514 78 KKLKLLDLSESSFS-GMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQV 156 (636)
Q Consensus 78 ~~L~~L~Ls~~~i~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 156 (636)
+++++|++++|.++ +.+|..+..+++|++|++++|.++++.. +..+++|++|++++|.++.. ++..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~l~~L~~L~Ls~n~i~~~--~~~~ 83 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-----------LPKLNKLKKLELSDNRVSGG--LEVL 83 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTT-----------CCCCTTCCEEECCSSCCCSC--THHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchh-----------hhcCCCCCEEECCCCcccch--HHHH
Confidence 68999999999998 7888889999999999999999987621 88899999999999999885 3456
Q ss_pred hCCCCCCCEEEccCCcCCCC-CCcCccCCCCCCEEEccCCcCCcCCC---ccccCCCCCCEEeCcC
Q 037514 157 VNELPSLVELHLSNCQLNFP-QSLPFLNFTSLSILELSYDNFNSQIP---QWLFNISTLVTLNLRS 218 (636)
Q Consensus 157 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~p---~~l~~l~~L~~L~L~~ 218 (636)
+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 77788999999999988764 33678888888888888888887544 4677888888888753
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=7.5e-16 Score=170.88 Aligned_cols=195 Identities=17% Similarity=0.141 Sum_probs=117.7
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhh
Q 037514 78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVV 157 (636)
Q Consensus 78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 157 (636)
+.++.|+|.++.+.. .+..+ |+.++|+.|.|.+..............+..+++|++|+|++|.+..++. .+
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~---~~ 243 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISA---NI 243 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSCCCG---GG
T ss_pred CccceEEeeCCCCCc-chhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCCh---hh
Confidence 678999999998875 34333 4445555555444321100000001127889999999999999997753 55
Q ss_pred CCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCC
Q 037514 158 NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLR 237 (636)
Q Consensus 158 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 237 (636)
..+++|++|+|++|.++ .+|..|.++++|++|+|++|.++. +|..|+++++|++|+|++|.+. .+|.. ++++++|+
T Consensus 244 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~-~lp~~-~~~l~~L~ 319 (727)
T 4b8c_D 244 FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWE-FGNLCNLQ 319 (727)
T ss_dssp GGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCC-CCCSS-TTSCTTCC
T ss_pred cCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCC-ccChh-hhcCCCcc
Confidence 68999999999999999 678889999999999999999994 7999999999999999999997 77753 89999999
Q ss_pred EEEcccccCccccchhhhccccCCcccc--hhhccCcCcccccccccCCCCCCEEEccCC
Q 037514 238 RLDLAINGFSGEKEQFIQTLSGCNNSTL--ETLETQRMNGTISENIGQLAELVALNLYRN 295 (636)
Q Consensus 238 ~L~L~~n~~~~~~~~~l~~l~~~~~~~L--~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n 295 (636)
+|+|++|.+++.+|..+..+. ... -.|..|.+++.+|.. |+.|+++.|
T Consensus 320 ~L~L~~N~l~~~~p~~~~~~~----~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 320 FLGVEGNPLEKQFLKILTEKS----VTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp CEECTTSCCCSHHHHHHHHHH----HHHHHHHHHHCCCCCCCCCC---------------
T ss_pred EEeCCCCccCCCChHHHhhcc----hhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 999999999999888876543 011 224488888888764 445566655
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3.9e-15 Score=133.95 Aligned_cols=106 Identities=30% Similarity=0.327 Sum_probs=61.0
Q ss_pred cccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcccccccc-ccccCCCCCCEEEC
Q 037514 488 TLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIIS-ENIGQLSEPYMLDL 566 (636)
Q Consensus 488 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L 566 (636)
+|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++... ..+..+++|+.|++
T Consensus 50 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 50 NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 345555555555533 445556666666666666655555555556666666666666655422 45566666666666
Q ss_pred cCCcceeecCh---hhhcCCCCCCeeeCCCCCC
Q 037514 567 YGNSWEGVITE---KHFRNLSGLDYLTISSSNS 596 (636)
Q Consensus 567 ~~n~l~~~~~~---~~~~~l~~L~~L~ls~n~~ 596 (636)
++|++++ +|. ..+..+++|++|++++|..
T Consensus 128 ~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 128 FNCEVTN-LNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CSSGGGT-STTHHHHHHTTCSSCCEETTEETTS
T ss_pred eCCcCcc-hHHHHHHHHHhCccCcEecCCCCCh
Confidence 6666653 333 3456666666666666644
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=133.83 Aligned_cols=92 Identities=23% Similarity=0.313 Sum_probs=53.6
Q ss_pred hhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCC
Q 037514 156 VVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCN 235 (636)
Q Consensus 156 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~ 235 (636)
.|..+++|++|+|++|.+++..+.+|.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|...+..+++
T Consensus 49 ~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~ 127 (193)
T 2wfh_A 49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSA 127 (193)
T ss_dssp GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTT
T ss_pred HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCcc
Confidence 4455555555555555555555555556666666666666666555555666666666666666665 344333556666
Q ss_pred CCEEEcccccCcc
Q 037514 236 LRRLDLAINGFSG 248 (636)
Q Consensus 236 L~~L~L~~n~~~~ 248 (636)
|+.|++++|.+..
T Consensus 128 L~~L~L~~N~~~C 140 (193)
T 2wfh_A 128 LSHLAIGANPLYC 140 (193)
T ss_dssp CCEEECCSSCEEC
T ss_pred ccEEEeCCCCeec
Confidence 6666666666553
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=8.7e-15 Score=128.74 Aligned_cols=127 Identities=20% Similarity=0.210 Sum_probs=72.8
Q ss_pred CCCcEEEccCCcCC-cccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCc
Q 037514 410 PSLYWLRLGGNNLS-GELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVST 488 (636)
Q Consensus 410 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 488 (636)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+ ++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-----~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKC-----PN 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHC-----TT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhC-----CC
Confidence 45666666666665 45555556666666666666666655 345566666666666666655444433322 44
Q ss_pred ccEEEcccCcCCCC-CchhhcCCCCCCEEeCcCCccCCccC---hhhhCCCCCCeEeCc
Q 037514 489 LETLDLASNKLGGN-LPDSLGNLLCLEYLGLSENSFLGSLP---TSIGNLSHLRALYLS 543 (636)
Q Consensus 489 L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~p---~~l~~l~~L~~L~Ls 543 (636)
|++|++++|++++. .+..+..+++|++|++++|++.+..+ ..+..+++|++|+++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 46666666665532 22455666666666666666664444 355666666666654
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=2.9e-14 Score=129.35 Aligned_cols=95 Identities=25% Similarity=0.278 Sum_probs=57.5
Q ss_pred hhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCC
Q 037514 156 VVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCN 235 (636)
Q Consensus 156 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~ 235 (636)
.++.+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|...+..+++
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~ 125 (177)
T 2o6r_A 47 VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTS 125 (177)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTT
T ss_pred HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcc
Confidence 3455555666666666555555555566666666666666666654555566666666666666666 344333566667
Q ss_pred CCEEEcccccCccccc
Q 037514 236 LRRLDLAINGFSGEKE 251 (636)
Q Consensus 236 L~~L~L~~n~~~~~~~ 251 (636)
|++|++++|.+.+..+
T Consensus 126 L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 126 LQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred cCEEEecCCCeeccCc
Confidence 7777777777665443
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=8e-14 Score=143.15 Aligned_cols=268 Identities=13% Similarity=0.085 Sum_probs=166.5
Q ss_pred CCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcce
Q 037514 285 AELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFK 364 (636)
Q Consensus 285 ~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 364 (636)
..++.+.+..+ ++. ++..+|.++ +|+.+.+..+ ........|.. .+|+.+.+.+ .+....+.+|.+|.+|+.
T Consensus 113 ~~l~~i~ip~~-i~~-I~~~aF~~~-~L~~i~l~~~---i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 113 KGYNEIILPNS-VKS-IPKDAFRNS-QIAKVVLNEG---LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp SSCSEEECCTT-CCE-ECTTTTTTC-CCSEEECCTT---CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred CCccEEEECCc-cCE-ehHhhcccC-CccEEEeCCC---ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 55666666543 333 555577764 6777777654 22222333333 3566666664 444455566666777777
Q ss_pred eccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCC
Q 037514 365 LTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGN 444 (636)
Q Consensus 365 L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 444 (636)
+++.+|.+......+|. . .+|+.+.+.++ +.......|..+++|+.+++.++ ++.....+|.+ .+|+.+.+ .+
T Consensus 185 l~l~~n~l~~I~~~aF~-~--~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~ 257 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-Y--AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PN 257 (401)
T ss_dssp EECTTSCCSEECTTTTT-T--CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ET
T ss_pred eecCCCcceEechhhEe-e--cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CC
Confidence 77766666655555554 2 56666666533 44444555666666666666553 33333444554 45666665 33
Q ss_pred CCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccC
Q 037514 445 RFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFL 524 (636)
Q Consensus 445 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~ 524 (636)
.++.+...+|.+|++|+.+++.+|.+.. +......+.+|.+|++|+.+++.+ .+.
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~------------------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~ 312 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFND------------------------DPEAMIHPYCLEGCPKLARFEIPE-SIR 312 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCC------------------------CTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccC------------------------CcccEECHHHhhCCccCCeEEeCC-ceE
Confidence 4555555555555555555555544320 111124456788889999999984 466
Q ss_pred CccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCC-CCCeeeCCCCC
Q 037514 525 GSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLS-GLDYLTISSSN 595 (636)
Q Consensus 525 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~ls~n~ 595 (636)
.....+|.++++|+.+++..+ ++.+...+|.++ +|+.+++++|... .++.+.|..++ .++.+++..+.
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHH
Confidence 566678888999999999654 777777888888 9999999999877 46777788774 78888888763
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=6.1e-14 Score=127.23 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=114.5
Q ss_pred CCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCC
Q 037514 80 LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNE 159 (636)
Q Consensus 80 L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 159 (636)
.+.+++++++++ .+|..+ .++|++|++++|.+++++... +.++++|++|++++|.++.++. ..+..
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~l~~n~l~~~~~--~~~~~ 74 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGV---------FDKLTQLTKLSLSQNQIQSLPD--GVFDK 74 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTT---------TTTCTTCSEEECCSSCCCCCCT--TTTTT
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHH---------hcCcccccEEECCCCcceEeCh--hHccC
Confidence 478999999988 455444 379999999999998876542 7899999999999999998854 56899
Q ss_pred CCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCC
Q 037514 160 LPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGS 224 (636)
Q Consensus 160 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~ 224 (636)
+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 99999999999999998888899999999999999999986666678899999999999998864
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=1.3e-13 Score=141.48 Aligned_cols=230 Identities=12% Similarity=0.101 Sum_probs=179.1
Q ss_pred CCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCC
Q 037514 351 AFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSL 430 (636)
Q Consensus 351 ~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 430 (636)
.-..+|.++ +|+.+.+..+ +......+|.+ .+|+.+.+.+ .+.......|..+++|+.+++.+|+++.....+|
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~---~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF 200 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN---STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF 200 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CCEECTTTTTT---CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT
T ss_pred ehHhhcccC-CccEEEeCCC-ccEECHHhcCC---CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE
Confidence 334455554 5777777655 55555566665 3688888876 5666667788999999999999998886556666
Q ss_pred CCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCC
Q 037514 431 PDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNL 510 (636)
Q Consensus 431 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 510 (636)
. +.+|+.+.+..+ ++.+...+|.++++|+.+++.++ ++......+.. .+|+.+.+ .+.++.....+|.+|
T Consensus 201 ~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~------~~L~~i~l-p~~i~~I~~~aF~~c 270 (401)
T 4fdw_A 201 V-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE------SGITTVKL-PNGVTNIASRAFYYC 270 (401)
T ss_dssp T-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT------CCCSEEEE-ETTCCEECTTTTTTC
T ss_pred e-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc------CCccEEEe-CCCccEEChhHhhCC
Confidence 6 689999999854 88888888999999999999875 44333333322 56799999 455765667889999
Q ss_pred CCCCEEeCcCCccC-----CccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCC
Q 037514 511 LCLEYLGLSENSFL-----GSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSG 585 (636)
Q Consensus 511 ~~L~~L~Ls~n~~~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 585 (636)
++|+.+++.+|.+. ...+.+|.++++|+.+++. +.++.+....|.++++|+.+++..+ ++ .++..+|.++ +
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~ 346 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-G 346 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-C
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-C
Confidence 99999999998764 3556789999999999999 5688888899999999999999665 55 6888899999 9
Q ss_pred CCeeeCCCCCCCccc
Q 037514 586 LDYLTISSSNSSLVF 600 (636)
Q Consensus 586 L~~L~ls~n~~~~~~ 600 (636)
|+.+++++|..+...
T Consensus 347 L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 347 IKEVKVEGTTPPQVF 361 (401)
T ss_dssp CCEEEECCSSCCBCC
T ss_pred CCEEEEcCCCCcccc
Confidence 999999999766544
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.54 E-value=2.1e-13 Score=140.65 Aligned_cols=107 Identities=14% Similarity=0.156 Sum_probs=70.5
Q ss_pred hhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCC
Q 037514 354 SWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDC 433 (636)
Q Consensus 354 ~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 433 (636)
..+..+..++.+......+. ...|... .+|+.+.+.++ +......+|..+.+|+.+++..+ ++.....+|.+|
T Consensus 270 ~~F~~~~~l~~~~~~~~~i~---~~~F~~~--~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c 342 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIVP---EKTFYGC--SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGC 342 (394)
T ss_dssp CTTTTCTTCCEEEECSSEEC---TTTTTTC--TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC
T ss_pred cccccccccceeccCceeec---ccccccc--ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCC
Confidence 34455555555554443221 2234444 66777777554 44445567778888888888644 555556788888
Q ss_pred CCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCC
Q 037514 434 SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYN 468 (636)
Q Consensus 434 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 468 (636)
.+|+.+++..+ ++.+...+|.+|++|+.+++..+
T Consensus 343 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 343 TSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 88888888766 77777778888888888888654
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.6e-14 Score=130.83 Aligned_cols=132 Identities=17% Similarity=0.275 Sum_probs=80.6
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCccccCCC-CCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCC
Q 037514 73 FVYSLKKLKLLDLSESSFSGMLPPNIGNLS-NLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVT 151 (636)
Q Consensus 73 ~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 151 (636)
.+.++++|++|++++|.++. +|. +..+. +|++|++++|.+++++. +..+++|++|++++|.++.++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~~~-----------l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKLDG-----------FPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEECC-----------CCCCSSCCEEECCSSCCCEEC
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcccc-----------cccCCCCCEEECCCCcccccC
Confidence 35566788888888888874 344 55544 88888888888876521 667777777777777776653
Q ss_pred ChhhhhCCCCCCCEEEccCCcCCCCCC-cCccCCCCCCEEEccCCcCCcCCCcc----ccCCCCCCEEeCcCCc
Q 037514 152 NWLQVVNELPSLVELHLSNCQLNFPQS-LPFLNFTSLSILELSYDNFNSQIPQW----LFNISTLVTLNLRSSQ 220 (636)
Q Consensus 152 ~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~~----l~~l~~L~~L~L~~n~ 220 (636)
. ..+..+++|++|++++|.+....+ ..+..+++|++|++++|.++. +|.. +..+++|++|++++|.
T Consensus 81 ~--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 81 E--GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp S--CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred c--chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence 2 234566666666666666643221 145555566666666655554 3332 4455555555555544
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.51 E-value=4.1e-13 Score=138.50 Aligned_cols=147 Identities=12% Similarity=0.147 Sum_probs=90.1
Q ss_pred CCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhh
Q 037514 428 TSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSL 507 (636)
Q Consensus 428 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l 507 (636)
..+.++..++.+.+..+. ..+....|..+..++.+......+.. . ....+.+|+.+.+.++ ++.....+|
T Consensus 247 ~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~---~-----~F~~~~~L~~i~l~~~-i~~I~~~aF 316 (394)
T 4fs7_A 247 SVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPE---K-----TFYGCSSLTEVKLLDS-VKFIGEEAF 316 (394)
T ss_dssp STTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECT---T-----TTTTCTTCCEEEECTT-CCEECTTTT
T ss_pred ccccccccceeEEcCCCc-ceeeccccccccccceeccCceeecc---c-----cccccccccccccccc-cceechhhh
Confidence 445555555555554442 22333345555555555554432211 1 1112355666666543 443445678
Q ss_pred cCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCC
Q 037514 508 GNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLD 587 (636)
Q Consensus 508 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 587 (636)
.++++|+.++|.++ +......+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+ +. .+. ..|.++++|+
T Consensus 317 ~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~-~~F~~c~~L~ 391 (394)
T 4fs7_A 317 ESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYR-YDFEDTTKFK 391 (394)
T ss_dssp TTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGG-GGBCTTCEEE
T ss_pred cCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehh-heecCCCCCc
Confidence 88888888888754 55455667888888998888766 76777788888889998888765 22 232 4588888777
Q ss_pred ee
Q 037514 588 YL 589 (636)
Q Consensus 588 ~L 589 (636)
.+
T Consensus 392 ~I 393 (394)
T 4fs7_A 392 WI 393 (394)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=1.1e-14 Score=132.05 Aligned_cols=136 Identities=15% Similarity=0.080 Sum_probs=112.9
Q ss_pred ccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCC-CCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCC
Q 037514 96 PNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS-SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLN 174 (636)
Q Consensus 96 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 174 (636)
..+.++.+|++|++++|.++.++. +..+. +|++|++++|.++++ ..+..+++|++|++++|.++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~-----------~~~~~~~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIEN-----------LGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCC-----------GGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCC
T ss_pred HhcCCcCCceEEEeeCCCCchhHH-----------hhhcCCCCCEEECCCCCCCcc----cccccCCCCCEEECCCCccc
Confidence 347788999999999999987642 44444 999999999999886 36888999999999999998
Q ss_pred CCCCcCccCCCCCCEEEccCCcCCcCCCc--cccCCCCCCEEeCcCCcCCCCCCCC---CCCCCCCCCEEEcccccCcc
Q 037514 175 FPQSLPFLNFTSLSILELSYDNFNSQIPQ--WLFNISTLVTLNLRSSQLSGSIPKF---PPGKMCNLRRLDLAINGFSG 248 (636)
Q Consensus 175 ~~~~~~~~~l~~L~~L~L~~n~~~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~---~~~~l~~L~~L~L~~n~~~~ 248 (636)
+..+..+..+++|++|++++|.+.. +|. .+..+++|++|++++|.+. .+|.. .+..+++|+.|+++.|....
T Consensus 78 ~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 78 RIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 7766667899999999999999976 565 7889999999999999998 55543 26788999999999887653
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=1.7e-13 Score=123.10 Aligned_cols=105 Identities=21% Similarity=0.259 Sum_probs=68.7
Q ss_pred cEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCC
Q 037514 490 ETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGN 569 (636)
Q Consensus 490 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 569 (636)
+++++++|+++ .+|..+. ++|+.|+|++|.+.+..|..|.++++|++|++++|+++++.+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 56666666666 3454442 56677777777776666666666777777777777777666666666777777777777
Q ss_pred cceeecChhhhcCCCCCCeeeCCCCCCCc
Q 037514 570 SWEGVITEKHFRNLSGLDYLTISSSNSSL 598 (636)
Q Consensus 570 ~l~~~~~~~~~~~l~~L~~L~ls~n~~~~ 598 (636)
++.+ +|.+.|..+++|++|++++|++..
T Consensus 89 ~l~~-~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKS-IPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCC-CCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCE-eCHHHhcCCCCCCEEEeCCCCCCC
Confidence 7663 555556667777777777774443
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=6.9e-13 Score=119.50 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=76.0
Q ss_pred cEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCC
Q 037514 490 ETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGN 569 (636)
Q Consensus 490 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 569 (636)
+.+++++|+++ .+|..+. ++|+.|+|++|++.+..|..|.++++|++|+|++|+++++.+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777775 5555443 67777777777777666777777777777777777777766666777777777777777
Q ss_pred cceeecChhhhcCCCCCCeeeCCCCCCCccc
Q 037514 570 SWEGVITEKHFRNLSGLDYLTISSSNSSLVF 600 (636)
Q Consensus 570 ~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~ 600 (636)
++. .+|.+.|..+++|++|++++|++...+
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCCccccc
Confidence 777 466666777777777777777554443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=2.8e-15 Score=138.78 Aligned_cols=98 Identities=27% Similarity=0.269 Sum_probs=40.3
Q ss_pred cEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcccccccc-ccccCCCCCCEEECcC
Q 037514 490 ETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIIS-ENIGQLSEPYMLDLYG 568 (636)
Q Consensus 490 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~ 568 (636)
++|++++|.++ .+|..+..+++|+.|++++|++.+ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 73 ~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 73 RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence 34444444333 233333333444444444444432 22 23444444444444444443221 2344444444444444
Q ss_pred CcceeecCh---------hhhcCCCCCCeee
Q 037514 569 NSWEGVITE---------KHFRNLSGLDYLT 590 (636)
Q Consensus 569 n~l~~~~~~---------~~~~~l~~L~~L~ 590 (636)
|++.+.+|. ..+..+++|+.||
T Consensus 150 N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 150 NPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp CHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 444333221 2345555555554
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=6.6e-15 Score=136.29 Aligned_cols=154 Identities=23% Similarity=0.256 Sum_probs=122.5
Q ss_pred CCCCCCcEEEccCCcCCcccCC------CCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHh
Q 037514 407 CSLPSLYWLRLGGNNLSGELST------SLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNA 480 (636)
Q Consensus 407 ~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 480 (636)
.....++.++++++.+.+..|. .+..+++|++|++++|.+++++ .+..+++|++|++++|+++ .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3345666667777777666665 7888999999999999998865 6888999999999999998 45555544
Q ss_pred hhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccC-hhhhCCCCCCeEeCcCccccccccc------
Q 037514 481 FSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLP-TSIGNLSHLRALYLSFNVMSRIISE------ 553 (636)
Q Consensus 481 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~------ 553 (636)
+ ++|++|++++|++++ +| .+..+++|+.|++++|++.+..+ ..+..+++|++|++++|.+.+..|.
T Consensus 92 ~-----~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 164 (198)
T 1ds9_A 92 A-----DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164 (198)
T ss_dssp H-----HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred C-----CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence 4 456999999999985 45 68889999999999999985332 4788999999999999999887654
Q ss_pred ----cccCCCCCCEEECcCCcce
Q 037514 554 ----NIGQLSEPYMLDLYGNSWE 572 (636)
Q Consensus 554 ----~~~~l~~L~~L~L~~n~l~ 572 (636)
.+..+++|+.|| +|+++
T Consensus 165 ~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 165 YRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHHhCCCcEEEC--CcccC
Confidence 378899999987 66655
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=3.4e-12 Score=114.53 Aligned_cols=105 Identities=23% Similarity=0.267 Sum_probs=55.4
Q ss_pred CCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCC
Q 037514 80 LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNE 159 (636)
Q Consensus 80 L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 159 (636)
.+++++++|.++ .+|..+. ++|++|++++|.|+++++.. |.++++|++|++++|+++.++. ..|.+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~---------~~~l~~L~~L~Ls~N~l~~l~~--~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGV---------FDRLTQLTRLDLDNNQLTVLPA--GVFDK 76 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTT---------TTTCTTCSEEECCSSCCCCCCT--TTTTT
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhh---------hcCcccCCEEECCCCCcCccCh--hhccC
Confidence 356777777776 3555442 66777777777766654321 4455555555555555554432 33444
Q ss_pred CCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCC
Q 037514 160 LPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFN 198 (636)
Q Consensus 160 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 198 (636)
+++|++|+|++|++++..+..|.++++|++|++++|.+.
T Consensus 77 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 455555555555544444444444444444444444444
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=3.8e-12 Score=114.64 Aligned_cols=105 Identities=20% Similarity=0.283 Sum_probs=57.1
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCC
Q 037514 81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNEL 160 (636)
Q Consensus 81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 160 (636)
+.++++++++. .+|..+. ++|++|++++|.|+++++.. +.++++|++|+|++|+++.++. ..|.++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~---------~~~l~~L~~L~Ls~N~l~~i~~--~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGV---------FDHLVNLQQLYFNSNKLTAIPT--GVFDKL 80 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTT---------TTTCTTCCEEECCSSCCCCCCT--TTTTTC
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHH---------hcCCcCCCEEECCCCCCCccCh--hHhCCc
Confidence 56777777765 4555443 66777777777766654321 4455555555555555555432 234455
Q ss_pred CCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCc
Q 037514 161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS 199 (636)
Q Consensus 161 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 199 (636)
++|++|+|++|++.+..+..|..+++|++|++++|.+..
T Consensus 81 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred chhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 555555555555554444445555555555555554443
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=1.5e-13 Score=139.64 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=73.9
Q ss_pred CCccEEECccCcCCccCCcccC-----CCCCCcEEEccCCcCCcccCCCC-CCCCCCCEEECCCCCCCCCcchhh-----
Q 037514 386 QKLSVIDLSNNKFFGGILSSLC-----SLPSLYWLRLGGNNLSGELSTSL-PDCSRLTALDIGGNRFLQLPSTSM----- 454 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~----- 454 (636)
+.|++|++++|.++......+. ..++|++|+|++|.++......+ ..+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 6677788877777543322221 12456666666665542211111 122344555555555443322222
Q ss_pred cCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCc----cChh
Q 037514 455 GNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGS----LPTS 530 (636)
Q Consensus 455 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~----~p~~ 530 (636)
...++|++|++++|.++...... ++..+..+++|++|+|++|.+... ++..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~-------------------------l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAV-------------------------LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHH-------------------------HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHH-------------------------HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 12344444444444443222111 222334445555555555554321 1333
Q ss_pred hhCCCCCCeEeCcCcccccc----ccccccCCCCCCEEECcCCcce
Q 037514 531 IGNLSHLRALYLSFNVMSRI----ISENIGQLSEPYMLDLYGNSWE 572 (636)
Q Consensus 531 l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 572 (636)
+...++|++|+|++|.+++. +...+...++|++|+|++|++.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 44445555555555555432 2223334455555555555554
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.30 E-value=2e-10 Score=118.37 Aligned_cols=103 Identities=20% Similarity=0.282 Sum_probs=56.5
Q ss_pred CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514 386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI 465 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 465 (636)
..|+.+.+. +.++......|..+.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+++
T Consensus 288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 445555553 2233334456677777777777654 44445567777888888887544 66677777888888888887
Q ss_pred cCCcCCCchhhhHHhhhcCCCCcccEEEcccCcC
Q 037514 466 SYNHITGEIKELTNAFSACNVSTLETLDLASNKL 499 (636)
Q Consensus 466 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 499 (636)
.++... ...+. ...+|+.+.+..+.+
T Consensus 365 ~~~~~~------~~~~~--~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 365 SGSRSQ------WNAIS--TDSGLQNLPVAPGSI 390 (394)
T ss_dssp SSCHHH------HHTCB--CCCCC----------
T ss_pred CCceee------hhhhh--ccCCCCEEEeCCCCE
Confidence 766421 12222 235667777665543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=9.5e-13 Score=133.80 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=109.0
Q ss_pred CCCCEEECCCCCCCCCcchhhc-----CCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhh-
Q 037514 434 SRLTALDIGGNRFLQLPSTSMG-----NLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSL- 507 (636)
Q Consensus 434 ~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l- 507 (636)
+.|++|++++|.++......+. ..++|++|++++|.+++.....+... +++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~----L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV----FLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHH----HHTEEEEECCSSCCCHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHH----HHhccHhhcCCCCCCHHHHHHHH
Confidence 3556666666666543322222 22577777777777764333322211 1356888888888874433333
Q ss_pred ----cCCCCCCEEeCcCCccCC----ccChhhhCCCCCCeEeCcCccccccc----cccccCCCCCCEEECcCCcceeec
Q 037514 508 ----GNLLCLEYLGLSENSFLG----SLPTSIGNLSHLRALYLSFNVMSRII----SENIGQLSEPYMLDLYGNSWEGVI 575 (636)
Q Consensus 508 ----~~l~~L~~L~Ls~n~~~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~ 575 (636)
...++|+.|+|++|.+.. .++..+...++|++|+|++|.+++.. ...+...++|++|+|++|.+++..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 346789999999998864 34555678899999999999998643 566778889999999999987532
Q ss_pred Ch---hhhcCCCCCCeeeCCCCCCC
Q 037514 576 TE---KHFRNLSGLDYLTISSSNSS 597 (636)
Q Consensus 576 ~~---~~~~~l~~L~~L~ls~n~~~ 597 (636)
.. ..+...++|++|++++|.+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 22 23456799999999999775
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=7.5e-12 Score=126.79 Aligned_cols=102 Identities=20% Similarity=0.151 Sum_probs=61.6
Q ss_pred EEEcccC-cCCCCCchhhcCCCCCCEEeCcC-CccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcC
Q 037514 491 TLDLASN-KLGGNLPDSLGNLLCLEYLGLSE-NSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYG 568 (636)
Q Consensus 491 ~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 568 (636)
.++.+++ +++ .+|. +..+++|+.|+|++ |.+.+..+..|.++++|++|+|++|++++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 555 3555 66666666666664 666655555666666666666666666666666666666666666666
Q ss_pred CcceeecChhhhcCCCCCCeeeCCCCCC
Q 037514 569 NSWEGVITEKHFRNLSGLDYLTISSSNS 596 (636)
Q Consensus 569 n~l~~~~~~~~~~~l~~L~~L~ls~n~~ 596 (636)
|++. .+|...|..++ |+.|++++|.+
T Consensus 90 N~l~-~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 90 NALE-SLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SCCS-CCCSTTTCSCC-CCEEECCSSCC
T ss_pred Cccc-eeCHHHcccCC-ceEEEeeCCCc
Confidence 6665 35555555444 66666666643
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=8.2e-10 Score=113.70 Aligned_cols=334 Identities=11% Similarity=0.127 Sum_probs=162.7
Q ss_pred CCCCCcCccCCC-CCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCc---CCCCCCCCCCCCCCCCCEEEcccccCccc
Q 037514 174 NFPQSLPFLNFT-SLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQ---LSGSIPKFPPGKMCNLRRLDLAINGFSGE 249 (636)
Q Consensus 174 ~~~~~~~~~~l~-~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~~~~~l~~L~~L~L~~n~~~~~ 249 (636)
+.+...+|.+++ .|+.+.+..+ ++.+-..+|.++++|+.+.+..|. ++ .++...|..+.+|+.+.+..+ +..
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~- 127 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTE- 127 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSE-
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cce-
Confidence 334456677764 5888888643 555556677788888888776653 33 344445666666665544322 111
Q ss_pred cchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecC
Q 037514 250 KEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMR 329 (636)
Q Consensus 250 ~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 329 (636)
.-...+..+.+|+.+.+..+. . .+....|..+..|+.+.+..+ .. .+.
T Consensus 128 --------------------------I~~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~---~~-~I~ 175 (394)
T 4gt6_A 128 --------------------------IDSEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDS---VT-AIE 175 (394)
T ss_dssp --------------------------ECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT---CC-EEC
T ss_pred --------------------------ehhhhhhhhccccccccccee-e-eecccceecccccccccccce---ee-Eec
Confidence 112345566778888876542 2 255557888888888887654 11 122
Q ss_pred CCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCC
Q 037514 330 SDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSL 409 (636)
Q Consensus 330 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l 409 (636)
........|+.+.+.... ......++..+..++............. ..+ ...+.........+...
T Consensus 176 ~~aF~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~ 241 (394)
T 4gt6_A 176 ERAFTGTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAID-NVL------------YEKSANGDYALIRYPSQ 241 (394)
T ss_dssp TTTTTTCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSS-SCE------------EEECTTSCEEEEECCTT
T ss_pred cccccccceeEEEECCcc-cccccchhhhccccceeccccccccccc-cee------------ecccccccccccccccc
Confidence 222233456666665432 2233344555555555544333221110 000 00000000000011112
Q ss_pred CCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcc
Q 037514 410 PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTL 489 (636)
Q Consensus 410 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L 489 (636)
..+..+.+.. .++.....+|.++..|+.+.+..+ +..+...+|.++++|+.+.+.
T Consensus 242 ~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~----------------------- 296 (394)
T 4gt6_A 242 REDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS----------------------- 296 (394)
T ss_dssp CCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-----------------------
T ss_pred cccceEEcCC-cceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-----------------------
Confidence 2233333322 122223345555566666655433 222333445555555555443
Q ss_pred cEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCC
Q 037514 490 ETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGN 569 (636)
Q Consensus 490 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 569 (636)
+.++.....+|.+|.+|+.++|..+ +......+|.++++|+.+.+..+ ++.+...+|.++++|+.+++.++
T Consensus 297 -------~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 297 -------SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp -------TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred -------CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 1222233345666666666666654 44334456666777777776533 55555566777777777777666
Q ss_pred cceeecChhhhcCCCCCCeeeCCCCC
Q 037514 570 SWEGVITEKHFRNLSGLDYLTISSSN 595 (636)
Q Consensus 570 ~l~~~~~~~~~~~l~~L~~L~ls~n~ 595 (636)
.... ..|..+.+|+.+.+..+.
T Consensus 368 ~~~~----~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 368 RSQW----NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp HHHH----HTCBCCCCC---------
T ss_pred eeeh----hhhhccCCCCEEEeCCCC
Confidence 4321 235566677777766553
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=4.9e-10 Score=113.32 Aligned_cols=103 Identities=22% Similarity=0.204 Sum_probs=58.7
Q ss_pred EEeCCCC-CCCCCCCccccCCCCCCEEeCcC-CCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCC
Q 037514 82 LLDLSES-SFSGMLPPNIGNLSNLQYLDLSY-QNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNE 159 (636)
Q Consensus 82 ~L~Ls~~-~i~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 159 (636)
.++.+++ +++ .+|. |..+++|++|+|++ |.+++++... |.++++|++|+|++|.+++++. ..|.+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~---------~~~l~~L~~L~l~~N~l~~~~~--~~~~~ 78 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRD---------LRGLGELRNLTIVKSGLRFVAP--DAFHF 78 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGG---------SCSCCCCSEEECCSSCCCEECT--TGGGS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhH---------hccccCCCEEECCCCccceeCH--HHhcC
Confidence 4577776 676 4666 77777778888875 7777665432 5555555555555555555422 34555
Q ss_pred CCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCC
Q 037514 160 LPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFN 198 (636)
Q Consensus 160 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 198 (636)
+++|++|+|++|++++..+..|..++ |++|++.+|.+.
T Consensus 79 l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 79 TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55555555555555544444444333 555555555444
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.03 E-value=3.2e-08 Score=101.20 Aligned_cols=80 Identities=9% Similarity=0.101 Sum_probs=44.3
Q ss_pred CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514 386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI 465 (636)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 465 (636)
..|+.+.+..+ +.......|..+++|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+
T Consensus 263 ~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 263 TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 34444444332 22233345556666666666666555444556666666666666543 55555556666666666666
Q ss_pred cC
Q 037514 466 SY 467 (636)
Q Consensus 466 ~~ 467 (636)
..
T Consensus 341 p~ 342 (379)
T 4h09_A 341 PK 342 (379)
T ss_dssp CT
T ss_pred CC
Confidence 44
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.96 E-value=5.8e-08 Score=99.29 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=54.5
Q ss_pred CcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEEC
Q 037514 487 STLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDL 566 (636)
Q Consensus 487 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 566 (636)
..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +.......|.++++|+.+.+.++.++.+....|.++.+|+.+.+
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 44455555433 33233344555556666655443 33233345555666666666555555555556666666666666
Q ss_pred cCCcceeecChhhhcCCCCCCeeeCCC
Q 037514 567 YGNSWEGVITEKHFRNLSGLDYLTISS 593 (636)
Q Consensus 567 ~~n~l~~~~~~~~~~~l~~L~~L~ls~ 593 (636)
..+ ++ .|++.+|.++++|+.+.+..
T Consensus 318 p~~-l~-~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 318 PTA-LK-TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred Ccc-cc-EEHHHHhhCCCCCCEEEECC
Confidence 443 33 45555566666666666544
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=1.1e-09 Score=110.07 Aligned_cols=84 Identities=13% Similarity=0.219 Sum_probs=45.7
Q ss_pred CCCCCCEEeCcCCccCCccChhhh---CCCCCCeEeCcCcccccc----ccccccCCCCCCEEECcCCcceeecChhhhc
Q 037514 509 NLLCLEYLGLSENSFLGSLPTSIG---NLSHLRALYLSFNVMSRI----ISENIGQLSEPYMLDLYGNSWEGVITEKHFR 581 (636)
Q Consensus 509 ~l~~L~~L~Ls~n~~~~~~p~~l~---~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 581 (636)
.+++|+.|+|.+|.+....+..+. .+++|++|+|++|.+.+. ++..+..+++|+.|++++|.++...-. .+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~-~l~ 328 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK-ELQ 328 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH-HHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH-HHH
Confidence 356667777766666543333332 356677777777776653 223334567777777777765432211 122
Q ss_pred C-CCCCCeeeCCCCC
Q 037514 582 N-LSGLDYLTISSSN 595 (636)
Q Consensus 582 ~-l~~L~~L~ls~n~ 595 (636)
. + ...++++.++
T Consensus 329 ~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 329 KSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHC--CSEEECCSBC
T ss_pred HHc--CCEEEecCCc
Confidence 1 1 3456777664
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=9.4e-10 Score=110.66 Aligned_cols=159 Identities=18% Similarity=0.258 Sum_probs=75.5
Q ss_pred CCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhc--CCCCCCeEeCcC--CcCCCc-hhhhHHh-
Q 037514 407 CSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMG--NLCNLHSLDISY--NHITGE-IKELTNA- 480 (636)
Q Consensus 407 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~--n~l~~~-~~~~~~~- 480 (636)
..+|+|+.|++++|.-. .++. +. .++|++|++..|.+.......+. .+++|++|+|+. |...+. ....+..
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 34455555555554211 1121 22 45566666655555433222222 456666666542 111111 0001111
Q ss_pred hhcCCCCcccEEEcccCcCCCCCchhh---cCCCCCCEEeCcCCccCCc----cChhhhCCCCCCeEeCcCccccccccc
Q 037514 481 FSACNVSTLETLDLASNKLGGNLPDSL---GNLLCLEYLGLSENSFLGS----LPTSIGNLSHLRALYLSFNVMSRIISE 553 (636)
Q Consensus 481 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 553 (636)
+....+++|+.|++++|.+.+..+..+ ..+++|+.|+|+.|.+.+. ++..+.++++|+.|++++|.++...-.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 111124666666666666653322222 2456677777777766543 233334567777777777776654333
Q ss_pred cccC-CCCCCEEECcCCc
Q 037514 554 NIGQ-LSEPYMLDLYGNS 570 (636)
Q Consensus 554 ~~~~-l~~L~~L~L~~n~ 570 (636)
.+.. + ...+++++++
T Consensus 326 ~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 326 ELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHC--CSEEECCSBC
T ss_pred HHHHHc--CCEEEecCCc
Confidence 3332 2 3456777665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=4.9e-08 Score=88.46 Aligned_cols=13 Identities=8% Similarity=0.202 Sum_probs=5.9
Q ss_pred CCCCCCEEECCCC
Q 037514 432 DCSRLTALDIGGN 444 (636)
Q Consensus 432 ~l~~L~~L~L~~n 444 (636)
..+.|++|+|++|
T Consensus 34 ~~~~L~~L~L~~n 46 (185)
T 1io0_A 34 NDPDLEEVNLNNI 46 (185)
T ss_dssp TCTTCCEEECTTC
T ss_pred cCCCCCEEEecCC
Confidence 3444444444444
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=5.7e-08 Score=88.04 Aligned_cols=117 Identities=12% Similarity=0.082 Sum_probs=50.9
Q ss_pred hcCCCCCCeEeCcCC-cCCCchhhhHHhhhcCCCCcccEEEcccCcCCCC----CchhhcCCCCCCEEeCcCCccCCc--
Q 037514 454 MGNLCNLHSLDISYN-HITGEIKELTNAFSACNVSTLETLDLASNKLGGN----LPDSLGNLLCLEYLGLSENSFLGS-- 526 (636)
Q Consensus 454 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~~-- 526 (636)
+...++|++|++++| .+.......+...-. ..++|++|+|++|++... +...+...++|++|+|++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 334445555555555 444322222221111 124445555555554421 222333444555555555554432
Q ss_pred --cChhhhCCCCCCeEeC--cCcccccc----ccccccCCCCCCEEECcCCcc
Q 037514 527 --LPTSIGNLSHLRALYL--SFNVMSRI----ISENIGQLSEPYMLDLYGNSW 571 (636)
Q Consensus 527 --~p~~l~~l~~L~~L~L--s~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 571 (636)
+...+...++|++|++ ++|.+... +.+.+...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2333444455555555 45555432 122333445555555555554
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=9.4e-08 Score=90.96 Aligned_cols=83 Identities=22% Similarity=0.175 Sum_probs=53.8
Q ss_pred cCCCCCCEEeCcCCccCC--ccChhhhCCCCCCeEeCcCccccccccccccCCC--CCCEEECcCCcceeecCh------
Q 037514 508 GNLLCLEYLGLSENSFLG--SLPTSIGNLSHLRALYLSFNVMSRIISENIGQLS--EPYMLDLYGNSWEGVITE------ 577 (636)
Q Consensus 508 ~~l~~L~~L~Ls~n~~~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~------ 577 (636)
.++++|+.|+|++|++.+ .+|..+..+++|+.|+|++|++++. ..+..+. .|++|++++|++.+.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456667777777776665 3445566677777777777777664 2233333 788888888887766652
Q ss_pred hhhcCCCCCCeeeCC
Q 037514 578 KHFRNLSGLDYLTIS 592 (636)
Q Consensus 578 ~~~~~l~~L~~L~ls 592 (636)
.++..+++|+.||=.
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 346777888877643
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.21 E-value=1.1e-06 Score=83.48 Aligned_cols=80 Identities=30% Similarity=0.326 Sum_probs=41.7
Q ss_pred CCCCCCEEEccCCcCCCC--CCcCccCCCCCCEEEccCCcCCcCCCccccCCC--CCCEEeCcCCcCCCCCCCCC-----
Q 037514 159 ELPSLVELHLSNCQLNFP--QSLPFLNFTSLSILELSYDNFNSQIPQWLFNIS--TLVTLNLRSSQLSGSIPKFP----- 229 (636)
Q Consensus 159 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p~~~----- 229 (636)
++++|++|+|++|.+++. ++..+..+++|++|+|++|.+++. ..+..+. +|++|+|++|.+.+.+|+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 455566666666655542 223344556666666666665552 2233333 66666666666655444211
Q ss_pred -CCCCCCCCEEE
Q 037514 230 -PGKMCNLRRLD 240 (636)
Q Consensus 230 -~~~l~~L~~L~ 240 (636)
+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 44556666554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=8.8e-07 Score=77.98 Aligned_cols=83 Identities=10% Similarity=0.019 Sum_probs=49.5
Q ss_pred cccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCc-cCCccChhhhCC----CCCCeEeCcCcc-ccccccccccCCCCC
Q 037514 488 TLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENS-FLGSLPTSIGNL----SHLRALYLSFNV-MSRIISENIGQLSEP 561 (636)
Q Consensus 488 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-~~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 561 (636)
.|+.||+++|.++..--..+.++++|+.|+|++|. ++..--..+..+ ++|++|+|++|. +++.--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45666666666664444455667777777777774 443333334443 357777777763 665544555666777
Q ss_pred CEEECcCCc
Q 037514 562 YMLDLYGNS 570 (636)
Q Consensus 562 ~~L~L~~n~ 570 (636)
++|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777764
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=2e-06 Score=75.65 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=55.6
Q ss_pred CCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCc-CCCchhhhHHhhhcCCCCcccEEEcccCc-CCCCCchhhcCCC
Q 037514 434 SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNH-ITGEIKELTNAFSACNVSTLETLDLASNK-LGGNLPDSLGNLL 511 (636)
Q Consensus 434 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~ 511 (636)
..|++||+++|.++...-..+..+++|++|+|++|. +++..-..+..... ..++|++|+|++|. ++..--..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~-~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLEN-LQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHH-HHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhccc-ccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 467778888777776555556778888888888885 55332222222100 01356888888774 6644445566777
Q ss_pred CCCEEeCcCCc
Q 037514 512 CLEYLGLSENS 522 (636)
Q Consensus 512 ~L~~L~Ls~n~ 522 (636)
+|++|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 78888888775
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.50 E-value=8.2e-05 Score=66.72 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=40.2
Q ss_pred hcCCCCCCEEeCcCCccCC----ccChhhhCCCCCCeEeCcCcccccc----ccccccCCCCCCEEECcCCcc---eeec
Q 037514 507 LGNLLCLEYLGLSENSFLG----SLPTSIGNLSHLRALYLSFNVMSRI----ISENIGQLSEPYMLDLYGNSW---EGVI 575 (636)
Q Consensus 507 l~~l~~L~~L~Ls~n~~~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l---~~~~ 575 (636)
+..-+.|+.|+|++|.+.. .+.+.+..-+.|++|+|++|.|... +-+.+..-+.|++|+|++|.. ....
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 3334445555555554432 1222333445555555555555432 223344445566666654422 1110
Q ss_pred ---ChhhhcCCCCCCeeeCCCC
Q 037514 576 ---TEKHFRNLSGLDYLTISSS 594 (636)
Q Consensus 576 ---~~~~~~~l~~L~~L~ls~n 594 (636)
-...+...++|+.|+++.|
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHhCCCcCeEeccCC
Confidence 0123445566666666655
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.50 E-value=0.00015 Score=65.10 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=30.5
Q ss_pred CCCCCCEEECCCC-CCCCC----cchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCC
Q 037514 432 DCSRLTALDIGGN-RFLQL----PSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG 500 (636)
Q Consensus 432 ~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 500 (636)
+-+.|++|+|++| .+... ...++..-+.|+.|+|++|++.+.....+...-.. -++|++|+|++|.|+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~-N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-CSSCCEEECCSSBCC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhc-CCccCeEecCCCcCC
Confidence 3455666666553 44321 22234444555555555555553333333221111 134455555555554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.43 E-value=0.00013 Score=61.16 Aligned_cols=68 Identities=10% Similarity=0.082 Sum_probs=47.5
Q ss_pred CeEeCcCcccc-ccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccccccccccCc
Q 037514 538 RALYLSFNVMS-RIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPF 610 (636)
Q Consensus 538 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~ 610 (636)
..++.+++.++ ..+|..+. ++|++|+|++|+++ .+|.+.|..+++|+.|+|++| +..|+|...|+..|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N--P~~CdC~l~~l~~w 79 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGAN--PWRCDCRLVPLRAW 79 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSS--CCBCSGGGHHHHHH
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCC--CeeccCccHHHHHH
Confidence 36677777776 23443322 35788888888887 578888888888888888888 56666666665543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.56 E-value=0.0033 Score=52.49 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=19.2
Q ss_pred CCCeEeCcCccccccccccccCCCCCCEEECcCCcce
Q 037514 536 HLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWE 572 (636)
Q Consensus 536 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 572 (636)
+|++|+|++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3455555555555544445555555555555555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.11 E-value=7.2 Score=30.14 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=18.7
Q ss_pred cccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514 552 SENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSS 594 (636)
Q Consensus 552 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n 594 (636)
...|.++.+|+.+.+-.+ ++ .|.+.+|.++.+|+.+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECCS
T ss_pred HHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcCC
Confidence 344444444444444433 11 344444555555555555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.06 E-value=9.8 Score=29.36 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=16.9
Q ss_pred CcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECC
Q 037514 403 LSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIG 442 (636)
Q Consensus 403 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 442 (636)
...|.++.+|+.+.+..+ ++.....+|.+|.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 334444445554444432 222333444444444444443
Done!