BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037515
         (263 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SIC|I Chain I, Molecular Recognition At The Active Site Of Subtilisin
           Bpn': Crystallographic Studies Using Genetically
           Engineered Proteinaceous Inhibitor Ssi (Streptomyces
           Subtilisin Inhibitor)
          Length = 107

 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 12/56 (21%)

Query: 115 LGCAPGPVAMYGTNGSACVDYINKAIQLFNTNLKTLVDDLNNQFRDAKFIYINAYD 170
           L CAPGP   +   GSAC D            L  +  DLN   R    +    YD
Sbjct: 27  LTCAPGPSGTHPAAGSACAD------------LAAVGGDLNALTRGEDVMCPKVYD 70


>pdb|4EZG|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
           (Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
           1.50 A Resolution
 pdb|4EZG|B Chain B, Crystal Structure Of A Leucine Rich Hypothetical Protein
           (Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
           1.50 A Resolution
          Length = 197

 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 175 DASVGIQDDLVTTIIG--PCCPVANLPMNNGILTCIPFSTSCSIRYANIFWDGVH 227
           D S    DD + T I   P     +L  N  I    P  T   ++  NI +DGVH
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIXPLKTLPELKSLNIQFDGVH 172


>pdb|2SIC|I Chain I, Refined Crystal Structure Of The Complex Of Subtilisin
           Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
           Angstroms Resolution
          Length = 107

 Score = 27.3 bits (59), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 12/56 (21%)

Query: 115 LGCAPGPVAMYGTNGSACVDYINKAIQLFNTNLKTLVDDLNNQFRDAKFIYINAYD 170
           L CAPGP   +   GSAC D            L  +  DLN   R    +    YD
Sbjct: 27  LTCAPGPSGTHPAAGSACAD------------LAAVGGDLNALTRGEDVMCPMVYD 70


>pdb|3SSI|A Chain A, Proteinase Inhibitor Ssi (Streptomyces Subtilisin,
           Inhibitor) From Streptomyces Albogriseolus
          Length = 113

 Score = 27.3 bits (59), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 12/56 (21%)

Query: 115 LGCAPGPVAMYGTNGSACVDYINKAIQLFNTNLKTLVDDLNNQFRDAKFIYINAYD 170
           L CAPGP   +   GSAC D            L  +  DLN   R    +    YD
Sbjct: 33  LTCAPGPSGTHPAAGSACAD------------LAAVGGDLNALTRGEDVMCPMVYD 76


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,896,152
Number of Sequences: 62578
Number of extensions: 317330
Number of successful extensions: 678
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 673
Number of HSP's gapped (non-prelim): 7
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)