BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037516
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 246 bits (628), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 153/216 (70%), Gaps = 4/216 (1%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDC---S 174
LP +DWR+ GAV +K+QG CG CW FS +AAVEGI KI TG LISLSEQ+++DC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 175 GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVP-TS 233
+RGC GG+M D F +II + G+ E YPY EG CN K I +Y++VP +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 234 ELALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLI 293
E AL+ AV+ QPVSVA++A+ F++YS G+F GPCG ++HAVTIVGYG+ YW++
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIV 180
Query: 294 KNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYPI 329
KNSWG WGE G++R++R+VGG G CGIA+KASYP+
Sbjct: 181 KNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 152/216 (70%), Gaps = 4/216 (1%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDC---S 174
LP +DWR+ GAV +K+QG CG W FS +AAVEGI KI TG LISLSEQ+++DC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 175 GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVP-TS 233
+RGC GG+M D F +II + G+ E YPY EG CN K I +Y++VP +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 234 ELALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLI 293
E AL+ AV+ QPVSVA++A+ F++YS G+F GPCG ++HAVTIVGYG+ YW++
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIV 180
Query: 294 KNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYPI 329
KNSWG WGE G++R++R+VGG G CGIA+KASYP+
Sbjct: 181 KNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 237 bits (605), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 151/215 (70%), Gaps = 4/215 (1%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS-GS 176
LP SIDWR GAV PVKNQG CG CW FS VAAVEGI +I TG LISLSEQQ++DC+ +
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTAN 62
Query: 177 RGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPT-SEL 235
GC GGWM+ AF +I+ + G+ E YPY+ ++G CN A I SY++VP+ +E
Sbjct: 63 HGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNSTVNA-PVVSIDSYENVPSHNEQ 121
Query: 236 ALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLIKN 295
+L+ AV+ QPVSV +DA+ F+ Y G+F G C + NHA+T+VGYG+ N+ +W++KN
Sbjct: 122 SLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTENDKDFWIVKN 181
Query: 296 SWGQNWGEGGFIRMRRDVGGA-GLCGIARKASYPI 329
SWG+NWGE G+IR R++ G CGI R ASYP+
Sbjct: 182 SWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 237 bits (605), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 113/216 (52%), Positives = 149/216 (68%), Gaps = 4/216 (1%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDC---S 174
LP +DWR+ GAV +K+QG CG CW FSA+A VEGI KI TG LISLSEQ+++DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 175 GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVP-TS 233
+RGC GG++ D F +II + G+ E YPY ++G CN K I +Y++VP +
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNN 120
Query: 234 ELALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLI 293
E AL+ AV+ QPVSVA+DA+ F+ YS G+F GPCG ++HAVTIVGYG+ YW++
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDYWIV 180
Query: 294 KNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYPI 329
KNSW WGE G++R+ R+VGGAG CGIA SYP+
Sbjct: 181 KNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 234 bits (598), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 118/220 (53%), Positives = 149/220 (67%), Gaps = 8/220 (3%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDC--SG 175
LP S+DWR +GAVT VK+QG CG CW FS V +VEGI IRTG L+SLSEQ+++DC +
Sbjct: 4 LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTAD 63
Query: 176 SRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKA---ARIRSYQDVP- 231
+ GC GG MD+AF YI + GL E YPY+ G CN R A + I +QDVP
Sbjct: 64 NDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPA 123
Query: 232 TSELALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEG-PY 290
SE L AV+ QPVSVA++AS F +YS GVF G CG L+H V +VGYG + +G Y
Sbjct: 124 NSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAEDGKAY 183
Query: 291 WLIKNSWGQNWGEGGFIRMRRDVGGA-GLCGIARKASYPI 329
W +KNSWG +WGE G+IR+ +D G + GLCGIA +ASYP+
Sbjct: 184 WTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPV 223
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/213 (55%), Positives = 146/213 (68%), Gaps = 10/213 (4%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS-GS 176
LP +DWRA+GAV P+KNQG CG CW FS V VE I +IRTG LISLSEQQ++DCS +
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKKN 60
Query: 177 RGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVP-TSEL 235
GC GG+ D A+ YII + G+ E YPY+ +G C R A K RI + VP +E
Sbjct: 61 HGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPC---RAAKKVVRIDGCKGVPQCNEN 117
Query: 236 ALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLIKN 295
AL+ AV+ QP VAIDASS F++Y GG+F GPCG LNH V IVGYG YW+++N
Sbjct: 118 ALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGYGKD----YWIVRN 173
Query: 296 SWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
SWG++WGE G+ RM+R VGG GLCGIAR YP
Sbjct: 174 SWGRHWGEQGYTRMKR-VGGCGLCGIARLPFYP 205
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 230 bits (587), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 148/217 (68%), Gaps = 5/217 (2%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCSG-- 175
+P S+DWR +GAVT VK+QG CG CW FS + AVEGI +I+T +L+SLSEQ+++DC
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 176 SRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVP-TSE 234
++GC GG MD AF +I + G+T E YPY+ +G C+ + A I +++VP E
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDE 121
Query: 235 LALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEG-PYWLI 293
AL AV+ QPVSVAIDA F++YS GVF G CG L+H V IVGYG++ +G YW +
Sbjct: 122 NALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTV 181
Query: 294 KNSWGQNWGEGGFIRMRRDVGG-AGLCGIARKASYPI 329
KNSWG WGE G+IRM R + GLCGIA +ASYPI
Sbjct: 182 KNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 218
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 113/214 (52%), Positives = 149/214 (69%), Gaps = 5/214 (2%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDC-SGS 176
LP +DWR++GAV +KNQ CG CW FSAVAAVE I KIRTG+LISLSEQ+++DC + S
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 177 RGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVP-TSEL 235
GC GGWM++AF YII + G+ ++ YPY +G C R ++ I +Q V +E
Sbjct: 61 HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYR--LRVVSINGFQRVTRNNES 118
Query: 236 ALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLIKN 295
AL+ AV+ QPVSV ++A+ F++YS G+F GPCG NH V IVGYG+ + YW+++N
Sbjct: 119 ALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVRN 178
Query: 296 SWGQNWGEGGFIRMRRDVG-GAGLCGIARKASYP 328
SWGQNWG G+I M R+V AGLCGIA+ SYP
Sbjct: 179 SWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYP 212
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 228 bits (580), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 185/321 (57%), Gaps = 18/321 (5%)
Query: 17 LHEDSISAKH-ELWMAQSARTYKNQAEKAMXXXXXXXXXXXXXXXXXE---GNQTYKLSL 72
L+ + I H ELW + Y N+ ++ E G TY+L++
Sbjct: 1 LYPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAM 60
Query: 73 NEFADLTDEEFIASHTGYKMPTRNISNQSQSYANNWFGYPDSRRGLPRSIDWRARGAVTP 132
N D+T EE + TG K+P S S +N+ P+ P S+D+R +G VTP
Sbjct: 61 NHLGDMTSEEVVQKMTGLKVPL------SHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTP 114
Query: 133 VKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDC-SGSRGCYGGWMDDAFSYI 191
VKNQG CG CW FS+V A+EG K +TG+L++LS Q ++DC S + GC GG+M +AF Y+
Sbjct: 115 VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYV 174
Query: 192 IRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPT-SELALRYAVSRQ-PVSVA 249
+++G+ E YPY +E C + KAA+ R Y+++P +E AL+ AV+R PVSVA
Sbjct: 175 QKNRGIDSEDAYPYVGQEESCMYNPTG-KAAKCRGYREIPEGNEKALKRAVARVGPVSVA 233
Query: 250 IDASSPGFRYYSGGVFAGPCGN--NLNHAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFI 307
IDAS F++YS GV+ N NLNHAV VGYG +W+IKNSWG+NWG G+I
Sbjct: 234 IDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYI 293
Query: 308 RMRRDVGGAGLCGIARKASYP 328
M R+ A CGIA AS+P
Sbjct: 294 LMARNKNNA--CGIANLASFP 312
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 227 bits (579), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 146/216 (67%), Gaps = 4/216 (1%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDC---S 174
LP +DWR+ GAV +K+QG CG W FSA+A VEGI KI +G LISLSEQ+++DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 175 GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVP-TS 233
+RGC GG++ D F +II G+ E YPY ++G C+ K I +Y++VP +
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 234 ELALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLI 293
E AL+ AV+ QPVSVA+DA+ F+ Y+ G+F GPCG ++HA+ IVGYG+ YW++
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYGTEGGVDYWIV 180
Query: 294 KNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYPI 329
KNSW WGE G++R+ R+VGGAG CGIA SYP+
Sbjct: 181 KNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 227 bits (578), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 119/213 (55%), Positives = 145/213 (68%), Gaps = 10/213 (4%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS-GS 176
LP IDWR +GAVTPVKNQG CG CW FS V+ VE I +IRTG LISLSEQQ++DC+ +
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKKN 60
Query: 177 RGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVP-TSEL 235
GC GG A+ YII + G+ E YPY+ +G C R A K RI Y+ VP +E
Sbjct: 61 HGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPC---RAAKKVVRIDGYKGVPHCNEN 117
Query: 236 ALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLIKN 295
AL+ AV+ QP VAIDASS F++Y G+F+GPCG LNH V IVGY YW+++N
Sbjct: 118 ALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGYWKD----YWIVRN 173
Query: 296 SWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
SWG+ WGE G+IRM+R VGG GLCGIAR YP
Sbjct: 174 SWGRYWGEQGYIRMKR-VGGCGLCGIARLPYYP 205
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/213 (55%), Positives = 145/213 (68%), Gaps = 10/213 (4%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS-GS 176
LP IDWR +GAVTPVKNQGSCG CW FS V+ VE I +IRTG LISLSEQ+++DC +
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60
Query: 177 RGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVP-TSEL 235
GC GG A+ YII + G+ + YPY+ +G C + A K I Y VP +E
Sbjct: 61 HGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPC---QAASKVVSIDGYNGVPFCNEX 117
Query: 236 ALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLIKN 295
AL+ AV+ QP +VAIDASS F+ YS G+F+GPCG LNH VTIVGY + YW+++N
Sbjct: 118 ALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGY----QANYWIVRN 173
Query: 296 SWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
SWG+ WGE G+IRM R VGG GLCGIAR YP
Sbjct: 174 SWGRYWGEKGYIRMLR-VGGCGLCGIARLPYYP 205
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 221 bits (564), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 179/326 (54%), Gaps = 28/326 (8%)
Query: 17 LHEDSISAKH-ELWMAQSARTYKNQAEKAMXXXXXXXXXXXXXXXXXE---GNQTYKLSL 72
LH+D H LW + YK + E+A+ E G +Y L +
Sbjct: 2 LHKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGM 61
Query: 73 NEFADLTDEEFIASHTGYKMPT---RNISNQSQSYANNWFGYPDSRRGLPRSIDWRARGA 129
N D+T EE ++ + ++P+ RNI+ +S + R LP S+DWR +G
Sbjct: 62 NHLGDMTSEEVMSLMSSLRVPSQWQRNITYKS-----------NPNRILPDSVDWREKGC 110
Query: 130 VTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS----GSRGCYGGWMD 185
VT VK QGSCG W FSAV A+E K++TG+L+SLS Q ++DCS G++GC GG+M
Sbjct: 111 VTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMT 170
Query: 186 DAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTS-ELALRYAVSRQ 244
AF YII ++G+ + YPY+ + C + +AA Y ++P E L+ AV+ +
Sbjct: 171 TAFQYIIDNKGIDSDASYPYKAMDQKCQYD-SKYRAATCSKYTELPYGREDVLKEAVANK 229
Query: 245 -PVSVAIDASSPGFRYYSGGVFAGP-CGNNLNHAVTIVGYGSSNEGPYWLIKNSWGQNWG 302
PVSV +DA P F Y GV+ P C N+NH V +VGYG N YWL+KNSWG N+G
Sbjct: 230 GPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFG 289
Query: 303 EGGFIRMRRDVGGAGLCGIARKASYP 328
E G+IRM R+ G CGIA SYP
Sbjct: 290 EEGYIRMARNKGNH--CGIASFPSYP 313
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 213 bits (543), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 122/306 (39%), Positives = 170/306 (55%), Gaps = 14/306 (4%)
Query: 27 ELWMAQSARTYKNQAEKAMXXXXXXXXXXXXXXXXXEGNQTYKLSLNEFADLTDEEFIAS 86
E WM + + YKN EK + + N +Y L LN FAD++++EF
Sbjct: 67 ESWMLKHNKIYKNIDEK-IYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEFKEK 125
Query: 87 HTGYKMPTRNISNQSQSYANNWFGYPDSRRGLPRSIDWRARGAVTPVKNQGSCGCCWIFS 146
+TG + S N D +P +DWR +GAVTPVKNQGSCG W FS
Sbjct: 126 YTGSIAGNYTTTELSYEEVLN-----DGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWAFS 180
Query: 147 AVAAVEGITKIRTGRLISLSEQQVLDCS-GSRGCYGGWMDDAFSYIIRSQGLTDERVYPY 205
AV+ +E I KIRTG L SEQ++LDC S GC GG+ A ++ G+ YPY
Sbjct: 181 AVSTIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIHYRNTYPY 239
Query: 206 QRREGYCNWQRGAMKAARIRSYQDV-PTSELALRYAVSRQPVSVAIDASSPGFRYYSGGV 264
+ + YC + AA+ + V P +E AL Y+++ QPVSV ++A+ F+ Y GG+
Sbjct: 240 EGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGI 299
Query: 265 FAGPCGNNLNHAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRMRRDVGGA-GLCGIAR 323
F GPCGN ++HAV VGYG + Y LI+NSWG WGE G+IR++R G + G+CG+
Sbjct: 300 FVGPCGNKVDHAVAAVGYGPN----YILIRNSWGTGWGENGYIRIKRGTGNSYGVCGLYT 355
Query: 324 KASYPI 329
+ YP+
Sbjct: 356 SSFYPV 361
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/214 (49%), Positives = 141/214 (65%), Gaps = 8/214 (3%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS-GSR 177
P SIDWR +GAVTPVKNQ CG CW FS VA +EGI KI TG+LISLSEQ++LDC S
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 178 GCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTS-ELA 236
GC GG+ + Y++ G+ ER YPY++++G C + I Y+ VP + E++
Sbjct: 62 GCDGGYQTTSLQYVV-DNGVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEIS 120
Query: 237 LRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLIKNS 296
L A++ QPVSV D+ GF++Y GG++ GPCG N +HAVT VGYG + Y L+KNS
Sbjct: 121 LIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGKT----YLLLKNS 176
Query: 297 WGQNWGEGGFIRMRRDVG-GAGLCGIARKASYPI 329
WG NWGE G+IR++R G G CG+ + +PI
Sbjct: 177 WGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPI 210
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 175/303 (57%), Gaps = 11/303 (3%)
Query: 29 WMAQSARTYKNQAEKAMXXXXXXXXXXXXXXXXXEGNQTYKLSLNEFADLTDEEFIASHT 88
WM + Y+N EK + + N +Y L LNEFADL+++EF +
Sbjct: 25 WMLNHNKFYENVDEK-LYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSNDEFNEKYV 83
Query: 89 GYKMPTRNISNQSQSYANNWFGYPDSRRGLPRSIDWRARGAVTPVKNQGSCGCCWIFSAV 148
G + + QSY + + LP ++DWR +GAVTPV++QGSCG CW FSAV
Sbjct: 84 GSLID----ATIEQSYDEEFIN--EDIVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAV 137
Query: 149 AAVEGITKIRTGRLISLSEQQVLDCS-GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQR 207
A VEGI KIRTG+L+ LSEQ+++DC S GC GG+ A Y+ ++ G+ YPY+
Sbjct: 138 ATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIHLRSKYPYKA 196
Query: 208 REGYCNWQRGAMKAARIRSYQDV-PTSELALRYAVSRQPVSVAIDASSPGFRYYSGGVFA 266
++G C ++ + V P +E L A+++QPVSV +++ F+ Y GG+F
Sbjct: 197 KQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFE 256
Query: 267 GPCGNNLNHAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRMRRDVGGA-GLCGIARKA 325
GPCG ++ AVT VGYG S Y LIKNSWG WGE G+IR++R G + G+CG+ + +
Sbjct: 257 GPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSS 316
Query: 326 SYP 328
YP
Sbjct: 317 YYP 319
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 139/218 (63%), Gaps = 7/218 (3%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS--- 174
LP +DWR+RG VTPVK+Q CG CW FS A+EG +TG+L+SLSEQ+++DCS
Sbjct: 7 LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAE 66
Query: 175 GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVP-TS 233
G++ C GG M+DAF Y++ S G+ E YPY R+ C Q K +I ++DVP S
Sbjct: 67 GNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRAQS-CEKVVKILGFKDVPRRS 125
Query: 234 ELALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGP--YW 291
E A++ A+++ PVS+AI+A F++Y GVF CG +L+H V +VGYG+ E +W
Sbjct: 126 EAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKESKKDFW 185
Query: 292 LIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYPI 329
++KNSWG WG G++ M G G CG+ AS+P+
Sbjct: 186 IMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPV 223
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/278 (41%), Positives = 154/278 (55%), Gaps = 26/278 (9%)
Query: 63 EGNQTYKLSLNEFADLTDEEFIASHTGY--KMPTRNISNQSQSYANNWFGYPDSRRGLPR 120
EG ++ +++N F D+T EEF G+ + P + Q + PR
Sbjct: 51 EGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYE-----------APR 99
Query: 121 SIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS---GSR 177
S+DWR +G VTPVKNQG CG W FSA A+EG +TGRLISLSEQ ++DCS G+
Sbjct: 100 SVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNE 159
Query: 178 GCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSELAL 237
GC GG MD AF Y+ + GL E YPY+ E C + A + D+P E AL
Sbjct: 160 GCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-KYSVANDAGFVDIPKQEKAL 218
Query: 238 RYAVSRQ-PVSVAIDASSPGFRYYSGGVFAGP--CGNNLNHAVTIVGYG----SSNEGPY 290
AV+ P+SVAIDA F +Y G++ P +++H V +VGYG S+ Y
Sbjct: 219 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKY 278
Query: 291 WLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
WL+KNSWG+ WG GG+++M +D CGIA ASYP
Sbjct: 279 WLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 314
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/215 (50%), Positives = 147/215 (68%), Gaps = 8/215 (3%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDC-SGSR 177
P S+D+R +G VTPVKNQG CG CW FS+V A+EG K +TG+L++LS Q ++DC S +
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 178 GCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPT-SELA 236
GC GG+M +AF Y+ +++G+ E YPY +E C + KAA+ R Y+++P +E A
Sbjct: 62 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTG-KAAKCRGYREIPEGNEKA 120
Query: 237 LRYAVSR-QPVSVAIDASSPGFRYYSGGVFAGPCGN--NLNHAVTIVGYGSSNEGPYWLI 293
L+ AV+R PVSVAIDAS F++YS GV+ N NLNHAV VGYG S +W+I
Sbjct: 121 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKHWII 180
Query: 294 KNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
KNSWG+NWG GG+I+M R+ A CGIA AS+P
Sbjct: 181 KNSWGENWGMGGYIKMARNKNNA--CGIANLASFP 213
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 140/214 (65%), Gaps = 4/214 (1%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCSG-SR 177
P+SIDWRA+GAVTPVKNQG+CG W FS +A VEGI KI TG L+ LSEQ+++DC S
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 178 GCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTS-ELA 236
GC GG+ + Y+ + G+ +VYPYQ ++ C +I Y+ VP++ E +
Sbjct: 62 GCKGGYQTTSLQYVANN-GVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXETS 120
Query: 237 LRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLIKNS 296
A++ QP+SV ++A F+ Y GVF GPCG L+HAVT VGYG+S+ Y +IKNS
Sbjct: 121 FLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIIIKNS 180
Query: 297 WGQNWGEGGFIRMRRDVGGA-GLCGIARKASYPI 329
WG NWGE G++R++R G + G CG+ + + YP
Sbjct: 181 WGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPF 214
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 204 bits (519), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 107/218 (49%), Positives = 140/218 (64%), Gaps = 10/218 (4%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS--- 174
LP S+DWR +G VT VK QGSCG CW FSAV A+E K++TG+L+SLS Q ++DCS
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 175 -GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTS 233
G++GC GG+M AF YII ++G+ + YPY+ + C + A +AA R Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-AYRAATCRKYTELPYG 119
Query: 234 -ELALRYAVSRQ-PVSVAIDASSPGFRYYSGGVFAGP-CGNNLNHAVTIVGYGSSNEGPY 290
E L+ AV+ + PVSV +DA P F Y GV+ P C N+NH V +VGYG N Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 291 WLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
WL+KNSWG N+GE G+IRM R+ G CGIA SYP
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARNKGNH--CGIASFPSYP 215
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/278 (41%), Positives = 153/278 (55%), Gaps = 26/278 (9%)
Query: 63 EGNQTYKLSLNEFADLTDEEFIASHTGY--KMPTRNISNQSQSYANNWFGYPDSRRGLPR 120
EG ++ +++N F D+T EEF G + P + Q + PR
Sbjct: 47 EGKHSFTMAMNAFGDMTSEEFRQVMNGLQNRKPRKGKVFQEPLFYE-----------APR 95
Query: 121 SIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS---GSR 177
S+DWR +G VTPVKNQG CG W FSA A+EG +TGRLISLSEQ ++DCS G+
Sbjct: 96 SVDWREKGYVTPVKNQGQCGSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNE 155
Query: 178 GCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSELAL 237
GC GG MD AF Y+ + GL E YPY+ E C + A + D+P E AL
Sbjct: 156 GCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-KYSVANDAGFVDIPKQEKAL 214
Query: 238 RYAVSR-QPVSVAIDASSPGFRYYSGGVFAGP--CGNNLNHAVTIVGYG----SSNEGPY 290
AV+ P+SVAIDA F +Y G++ P +++H V +VGYG S+ Y
Sbjct: 215 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKY 274
Query: 291 WLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
WL+KNSWG+ WG GG+++M +D CGIA ASYP
Sbjct: 275 WLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 310
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/218 (48%), Positives = 139/218 (63%), Gaps = 10/218 (4%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS--- 174
LP S+DWR +G VT VK QGSCG CW FSAV A+E K++TG+L+SLS Q ++DCS
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 175 -GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTS 233
G++GC GG+M AF YII ++G+ + YPY+ + C + +AA R Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCRKYTELPYG 119
Query: 234 -ELALRYAVSRQ-PVSVAIDASSPGFRYYSGGVFAGP-CGNNLNHAVTIVGYGSSNEGPY 290
E L+ AV+ + PVSV +DA P F Y GV+ P C N+NH V +VGYG N Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 291 WLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
WL+KNSWG N+GE G+IRM R+ G CGIA SYP
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARNKGNH--CGIASFPSYP 215
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/270 (42%), Positives = 150/270 (55%), Gaps = 26/270 (9%)
Query: 71 SLNEFADLTDEEFIASHTGY--KMPTRNISNQSQSYANNWFGYPDSRRGLPRSIDWRARG 128
++N F D+T EEF G+ + P + Q + PRS+DWR +G
Sbjct: 1 AMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYE-----------APRSVDWREKG 49
Query: 129 AVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS---GSRGCYGGWMD 185
VTPVKNQG CG CW FSA A+EG +TGRLISLSEQ ++DCS G+ GC GG MD
Sbjct: 50 YVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMD 109
Query: 186 DAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSELALRYAVSR-Q 244
AF Y+ + GL E YPY+ E C + A + D+P E AL AV+
Sbjct: 110 YAFQYVQDNGGLDSEESYPYEATEESCKYNP-KYSVANDAGFVDIPKQEKALMKAVATVG 168
Query: 245 PVSVAIDASSPGFRYYSGGVFAGP--CGNNLNHAVTIVGYG----SSNEGPYWLIKNSWG 298
P+SVAIDA F +Y G++ P +++H V +VGYG S+ YWL+KNSWG
Sbjct: 169 PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWG 228
Query: 299 QNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
+ WG GG+++M +D CGIA ASYP
Sbjct: 229 EEWGMGGYVKMAKDR--RNHCGIASAASYP 256
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 201 bits (510), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 138/218 (63%), Gaps = 10/218 (4%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS--- 174
LP S+DWR +G VT VK QGSCG CW FSAV A+E K++TG+L+SLS Q ++DCS
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 175 -GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTS 233
G++GC GG+M AF YII ++G+ + YPY+ + C + +AA Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYG 119
Query: 234 -ELALRYAVSRQ-PVSVAIDASSPGFRYYSGGVFAGP-CGNNLNHAVTIVGYGSSNEGPY 290
E L+ AV+ + PVSV +DA P F Y GV+ P C N+NH V +VGYG N Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 291 WLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
WL+KNSWG N+GE G+IRM R+ G CGIA SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 215
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 139/220 (63%), Gaps = 10/220 (4%)
Query: 116 RGLPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS- 174
R LP S+DWR +G VT VK QGSCG CW FSAV A+E K++TG+L+SLS Q ++DCS
Sbjct: 2 RILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCST 61
Query: 175 ---GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVP 231
G++GC GG+M AF YII ++G+ + YPY+ + C + +AA Y ++P
Sbjct: 62 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELP 120
Query: 232 TS-ELALRYAVSRQ-PVSVAIDASSPGFRYYSGGVFAGP-CGNNLNHAVTIVGYGSSNEG 288
E L+ AV+ + PVSV +DA P F Y GV+ P C N+NH V +VGYG N
Sbjct: 121 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 180
Query: 289 PYWLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
YWL+KNSWG N+GE G+IRM R+ G CGIA SYP
Sbjct: 181 EYWLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 218
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 138/218 (63%), Gaps = 10/218 (4%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS--- 174
LP S+DWR +G VT VK QGSCG CW FSAV A+E K++TG+L+SLS Q ++DCS
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 175 -GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTS 233
G++GC GG+M AF YII ++G+ + YPY+ + C + +AA Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYG 119
Query: 234 -ELALRYAVSRQ-PVSVAIDASSPGFRYYSGGVFAGP-CGNNLNHAVTIVGYGSSNEGPY 290
E L+ AV+ + PVSV +DA P F Y GV+ P C N+NH V +VGYG N Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 291 WLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
WL+KNSWG N+GE G+IRM R+ G CGIA SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 215
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 138/218 (63%), Gaps = 10/218 (4%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS--- 174
LP S+DWR +G VT VK QGSCG CW FSAV A+E K++TG+L+SLS Q ++DCS
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 175 -GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTS 233
G++GC GG+M AF YII ++G+ + YPY+ + C + +AA Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYG 120
Query: 234 -ELALRYAVSRQ-PVSVAIDASSPGFRYYSGGVFAGP-CGNNLNHAVTIVGYGSSNEGPY 290
E L+ AV+ + PVSV +DA P F Y GV+ P C N+NH V +VGYG N Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 291 WLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
WL+KNSWG N+GE G+IRM R+ G CGIA SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 216
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 138/218 (63%), Gaps = 10/218 (4%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS--- 174
LP S+DWR +G VT VK QGSCG CW FSAV A+E K++TG+L+SLS Q ++DCS
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 175 -GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTS 233
G++GC GG+M AF YII ++G+ + YPY+ + C + +AA Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYG 120
Query: 234 -ELALRYAVSRQ-PVSVAIDASSPGFRYYSGGVFAGP-CGNNLNHAVTIVGYGSSNEGPY 290
E L+ AV+ + PVSV +DA P F Y GV+ P C N+NH V +VGYG N Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 291 WLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
WL+KNSWG N+GE G+IRM R+ G CGIA SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 216
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/218 (47%), Positives = 138/218 (63%), Gaps = 10/218 (4%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS--- 174
LP S+DWR +G VT VK QGSCG CW FSAV A+E K++TG+L++LS Q ++DCS
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 175 -GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTS 233
G++GC GG+M AF YII ++G+ + YPY+ + C + +AA Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYG 119
Query: 234 -ELALRYAVSRQ-PVSVAIDASSPGFRYYSGGVFAGP-CGNNLNHAVTIVGYGSSNEGPY 290
E L+ AV+ + PVSV +DA P F Y GV+ P C N+NH V +VGYG N Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 291 WLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
WL+KNSWG N+GE G+IRM R+ G CGIA SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 215
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 144/215 (66%), Gaps = 8/215 (3%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDC-SGSR 177
P S+D+R +G VTPVKNQG CG CW FS+V A+EG K +TG+L++LS Q ++DC S +
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 178 GCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPT-SELA 236
GC GG+M +AF Y+ +++G+ E YPY +E C + KAA+ R Y+++P +E A
Sbjct: 61 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTG-KAAKCRGYREIPEGNEKA 119
Query: 237 LRYAVSR-QPVSVAIDASSPGFRYYSGGVFAGPCGN--NLNHAVTIVGYGSSNEGPYWLI 293
L+ AV+R PVSVAIDAS F++YS GV+ N NLNHAV VGYG +W+I
Sbjct: 120 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWII 179
Query: 294 KNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
KNSWG+NWG G+I M R+ A CGIA AS+P
Sbjct: 180 KNSWGENWGNKGYILMARNKNNA--CGIANLASFP 212
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 144/215 (66%), Gaps = 8/215 (3%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDC-SGSR 177
P S+D+R +G VTPVKNQG CG CW FS+V A+EG K +TG+L++LS Q ++DC S +
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 178 GCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPT-SELA 236
GC GG+M +AF Y+ +++G+ E YPY +E C + KAA+ R Y+++P +E A
Sbjct: 62 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTG-KAAKCRGYREIPEGNEKA 120
Query: 237 LRYAVSR-QPVSVAIDASSPGFRYYSGGVFAGPCGN--NLNHAVTIVGYGSSNEGPYWLI 293
L+ AV+R PVSVAIDAS F++YS GV+ N NLNHAV VGYG +W+I
Sbjct: 121 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWII 180
Query: 294 KNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
KNSWG+NWG G+I M R+ A CGIA AS+P
Sbjct: 181 KNSWGENWGNKGYILMARNKNNA--CGIANLASFP 213
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 144/215 (66%), Gaps = 8/215 (3%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDC-SGSR 177
P S+D+R +G VTPVKNQG CG CW FS+V A+EG K +TG+L++LS Q ++DC S +
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 63
Query: 178 GCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPT-SELA 236
GC GG+M +AF Y+ +++G+ E YPY +E C + KAA+ R Y+++P +E A
Sbjct: 64 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTG-KAAKCRGYREIPEGNEKA 122
Query: 237 LRYAVSR-QPVSVAIDASSPGFRYYSGGVFAGPCGN--NLNHAVTIVGYGSSNEGPYWLI 293
L+ AV+R PVSVAIDAS F++YS GV+ N NLNHAV VGYG +W+I
Sbjct: 123 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWII 182
Query: 294 KNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
KNSWG+NWG G+I M R+ A CGIA AS+P
Sbjct: 183 KNSWGENWGNKGYILMARNKNNA--CGIANLASFP 215
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/273 (42%), Positives = 159/273 (58%), Gaps = 19/273 (6%)
Query: 63 EGNQTYKLSLNEFADLTDEEFIASHTGYKMPTRNISNQSQSYANNWFGYPDSRRGLPRSI 122
+G TY ++N+F D++ EEF+A R + + + N Y S++ L S+
Sbjct: 67 KGEVTYSKAMNQFGDMSKEEFLA------YVNRGKAQKPKHPENLRMPYVSSKKPLAASV 120
Query: 123 DWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS---GSRGC 179
DWR+ AV+ VK+QG CG W FS AVEG ++ GRL SLSEQ ++DCS G+ GC
Sbjct: 121 DWRSN-AVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGC 179
Query: 180 YGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPT-SELALR 238
GGWMD AFSYI G+ E YPY+ + YC + + + Y D+P+ E +L
Sbjct: 180 DGGWMDSAFSYI-HDYGIMSESAYPYEAQGDYCRFDS-SQSVTTLSGYYDLPSGDENSLA 237
Query: 239 YAVSRQ-PVSVAIDASSPGFRYYSGGVFAGPCGN--NLNHAVTIVGYGSSNEGPYWLIKN 295
AV + PV+VAIDA+ ++YSGG+F N +LNH V +VGYGS N YW++KN
Sbjct: 238 DAVGQAGPVAVAIDATDE-LQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKN 296
Query: 296 SWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
SWG WGE G+ R R+ G CGIA ASYP
Sbjct: 297 SWGSGWGESGYWRQVRNYGNN--CGIATAASYP 327
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/218 (47%), Positives = 137/218 (62%), Gaps = 10/218 (4%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS--- 174
LP S+DWR +G VT VK QGSCG W FSAV A+E K++TG+L+SLS Q ++DCS
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 175 -GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTS 233
G++GC GG+M AF YII ++G+ + YPY+ + C + +AA Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYG 119
Query: 234 -ELALRYAVSRQ-PVSVAIDASSPGFRYYSGGVFAGP-CGNNLNHAVTIVGYGSSNEGPY 290
E L+ AV+ + PVSV +DA P F Y GV+ P C N+NH V +VGYG N Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 291 WLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
WL+KNSWG N+GE G+IRM R+ G CGIA SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 215
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/218 (47%), Positives = 137/218 (62%), Gaps = 10/218 (4%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS--- 174
LP S+DWR +G VT VK QGSCG W FSAV A+E K++TG+L+SLS Q ++DCS
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 175 -GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTS 233
G++GC GG+M AF YII ++G+ + YPY+ + C + +AA Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYG 120
Query: 234 -ELALRYAVSRQ-PVSVAIDASSPGFRYYSGGVFAGP-CGNNLNHAVTIVGYGSSNEGPY 290
E L+ AV+ + PVSV +DA P F Y GV+ P C N+NH V +VGYG N Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 291 WLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
WL+KNSWG N+GE G+IRM R+ G CGIA SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 216
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 143/213 (67%), Gaps = 8/213 (3%)
Query: 121 SIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDC-SGSRGC 179
S+D+R +G VTPVKNQG CG CW FS+V A+EG K +TG+L++LS Q ++DC S + GC
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGC 61
Query: 180 YGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPT-SELALR 238
GG+M +AF Y+ +++G+ E YPY +E C + KAA+ R Y+++P +E AL+
Sbjct: 62 GGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTG-KAAKCRGYREIPEGNEKALK 120
Query: 239 YAVSR-QPVSVAIDASSPGFRYYSGGVFAGPCGN--NLNHAVTIVGYGSSNEGPYWLIKN 295
AV+R PVSVAIDAS F++YS GV+ N NLNHAV VGYG +W+IKN
Sbjct: 121 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKN 180
Query: 296 SWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
SWG+NWG G+I M R+ A CGIA AS+P
Sbjct: 181 SWGENWGNKGYILMARNKNNA--CGIANLASFP 211
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/218 (47%), Positives = 137/218 (62%), Gaps = 10/218 (4%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS--- 174
LP S+DWR +G VT VK QGSCG W FSAV A+E K++TG+L+SLS Q ++DCS
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 175 -GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTS 233
G++GC GG+M AF YII ++G+ + YPY+ + C + +AA Y ++P
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYG 121
Query: 234 -ELALRYAVSRQ-PVSVAIDASSPGFRYYSGGVFAGP-CGNNLNHAVTIVGYGSSNEGPY 290
E L+ AV+ + PVSV +DA P F Y GV+ P C N+NH V +VGYG N Y
Sbjct: 122 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 181
Query: 291 WLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
WL+KNSWG N+GE G+IRM R+ G CGIA SYP
Sbjct: 182 WLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 217
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 144/215 (66%), Gaps = 8/215 (3%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDC-SGSR 177
P SID+R +G VTPVKNQG CG CW FS+V A+EG K +TG+L++LS Q ++DC S +
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 178 GCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPT-SELA 236
GC GG+M +AF Y+ R++G+ E YPY ++ C + KAA+ R Y+++P +E A
Sbjct: 62 GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTG-KAAKCRGYREIPEGNEKA 120
Query: 237 LRYAVSR-QPVSVAIDASSPGFRYYSGGVF--AGPCGNNLNHAVTIVGYGSSNEGPYWLI 293
L+ AV+R PVSVAIDAS F++YS GV+ +NLNHAV VGYG +W+I
Sbjct: 121 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKHWII 180
Query: 294 KNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
KNSWG++WG G+I M R+ A CGIA AS+P
Sbjct: 181 KNSWGESWGNKGYILMARNKNNA--CGIANLASFP 213
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/218 (47%), Positives = 137/218 (62%), Gaps = 10/218 (4%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS--- 174
LP S+DWR +G VT VK QGSCG W FSAV A+E K++TG+L+SLS Q ++DCS
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 175 -GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTS 233
G++GC GG+M AF YII ++G+ + YPY+ + C + +AA Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKCQYDS-KYRAATCSKYTELPYG 119
Query: 234 -ELALRYAVSRQ-PVSVAIDASSPGFRYYSGGVFAGP-CGNNLNHAVTIVGYGSSNEGPY 290
E L+ AV+ + PVSV +DA P F Y GV+ P C N+NH V +VGYG N Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 291 WLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
WL+KNSWG N+GE G+IRM R+ G CGIA SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 215
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 133/220 (60%), Gaps = 13/220 (5%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS---G 175
PRS+DWR +G VTPVKNQG CG CW FSA A+EG +TGRLISLSEQ ++DCS G
Sbjct: 3 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 62
Query: 176 SRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSEL 235
+ GC GG MD AF Y+ + GL E YPY+ E C + A + D+P E
Sbjct: 63 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-KYSVANDTGFVDIPKQEK 121
Query: 236 ALRYAVSR-QPVSVAIDASSPGFRYYSGGVFAGP--CGNNLNHAVTIVGYG----SSNEG 288
AL AV+ P+SVAIDA F +Y G++ P +++H V +VGYG S+
Sbjct: 122 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 181
Query: 289 PYWLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
YWL+KNSWG+ WG GG+++M +D CGIA ASYP
Sbjct: 182 KYWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 219
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 133/220 (60%), Gaps = 13/220 (5%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS---G 175
PRS+DWR +G VTPVKNQG CG CW FSA A+EG +TGRLISLSEQ ++DCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 176 SRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSEL 235
+ GC GG MD AF Y+ + GL E YPY+ E C + A + D+P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-KYSVANDTGFVDIPKQEK 120
Query: 236 ALRYAVSR-QPVSVAIDASSPGFRYYSGGVFAGP--CGNNLNHAVTIVGYG----SSNEG 288
AL AV+ P+SVAIDA F +Y G++ P +++H V +VGYG S+
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 180
Query: 289 PYWLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
YWL+KNSWG+ WG GG+++M +D CGIA ASYP
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 218
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 195 bits (495), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 137/215 (63%), Gaps = 8/215 (3%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS-GS 176
+P +DWR +GAVTPVKNQGSCG CW FSAV +EGI KIRTG L SEQ++LDC S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 177 RGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDV-PTSEL 235
GC GG+ A ++ G+ YPY+ + YC + AA+ + V P +E
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEG 119
Query: 236 ALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLIKN 295
AL Y+++ QPVSV ++A+ F+ Y GG+F GPCGN ++HAV VGYG + Y LIKN
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKN 175
Query: 296 SWGQNWGEGGFIRMRRDVGGA-GLCGIARKASYPI 329
SWG WGE G+IR++R G + G+CG+ + YP+
Sbjct: 176 SWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 195 bits (495), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 133/220 (60%), Gaps = 13/220 (5%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS---G 175
PRS+DWR +G VTPVKNQG CG CW FSA A+EG +TGRLISLSEQ ++DCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 176 SRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSEL 235
+ GC GG MD AF Y+ + GL E YPY+ E C + A + D+P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-KYSVANDAGFVDIPKQEK 120
Query: 236 ALRYAVSR-QPVSVAIDASSPGFRYYSGGVFAGP--CGNNLNHAVTIVGYG----SSNEG 288
AL AV+ P+SVAIDA F +Y G++ P +++H V +VGYG S+
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 180
Query: 289 PYWLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
YWL+KNSWG+ WG GG+++M +D CGIA ASYP
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 218
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 136/215 (63%), Gaps = 8/215 (3%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS-GS 176
+P +DWR +GAVTPVKNQGSCG CW FSAV +EGI KIRTG L SEQ++LDC S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 177 RGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDV-PTSEL 235
GC GG+ A ++ G+ YPY+ + YC + AA+ + V P ++
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 236 ALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLIKN 295
AL Y+++ QPVSV + A+ F+ Y GG+F GPCGN ++HAV VGYG + Y LIKN
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKN 175
Query: 296 SWGQNWGEGGFIRMRRDVGGA-GLCGIARKASYPI 329
SWG WGE G+IR++R G + G+CG+ + YP+
Sbjct: 176 SWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 132/220 (60%), Gaps = 13/220 (5%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS---G 175
PRS+DWR +G VTPVKNQG CG W FSA A+EG +TGRLISLSEQ ++DCS G
Sbjct: 3 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 62
Query: 176 SRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSEL 235
+ GC GG MD AF Y+ + GL E YPY+ E C + A + D+P E
Sbjct: 63 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-KYSVANDTGFVDIPKQEK 121
Query: 236 ALRYAVSR-QPVSVAIDASSPGFRYYSGGVFAGP--CGNNLNHAVTIVGYG----SSNEG 288
AL AV+ P+SVAIDA F +Y G++ P +++H V +VGYG S+
Sbjct: 122 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 181
Query: 289 PYWLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
YWL+KNSWG+ WG GG+++M +D CGIA ASYP
Sbjct: 182 KYWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 219
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 132/220 (60%), Gaps = 13/220 (5%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS---G 175
PRS+DWR +G VTPVKNQG CG W FSA A+EG +TGRLISLSEQ ++DCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 176 SRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSEL 235
+ GC GG MD AF Y+ + GL E YPY+ E C + A + D+P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-KYSVANDTGFVDIPKQEK 120
Query: 236 ALRYAVSR-QPVSVAIDASSPGFRYYSGGVFAGP--CGNNLNHAVTIVGYG----SSNEG 288
AL AV+ P+SVAIDA F +Y G++ P +++H V +VGYG S+
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 180
Query: 289 PYWLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
YWL+KNSWG+ WG GG+++M +D CGIA ASYP
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 218
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 133/220 (60%), Gaps = 13/220 (5%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS---G 175
PRS+DWR +G VTPVKNQG CG W FSA A+EG +TGRLISLSEQ ++DCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 176 SRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSEL 235
+ GC GG MD AF Y+ + GL E YPY+ E C + A + D+P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-KYSVANDAGFVDIPKQEK 120
Query: 236 ALRYAVSR-QPVSVAIDASSPGFRYYSGGVFAGP--CGNNLNHAVTIVGYG----SSNEG 288
AL AV+ P+SVAIDA F +Y G++ P +++H V +VGYG S++
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDDN 180
Query: 289 PYWLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
YWL+KNSWG+ WG GG+++M +D CGIA ASYP
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 218
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 135/214 (63%), Gaps = 8/214 (3%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS-GSR 177
P +DWR +GAVTPVKNQGSCG CW FSAV +EGI KIRTG L SEQ++LDC S
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 178 GCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDV-PTSELA 236
GC GG+ A ++ G+ YPY+ + YC + AA+ + V P ++ A
Sbjct: 62 GCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGA 120
Query: 237 LRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLIKNS 296
L Y+++ QPVSV + A+ F+ Y GG+F GPCGN ++HAV VGYG + Y LIKNS
Sbjct: 121 LLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKNS 176
Query: 297 WGQNWGEGGFIRMRRDVGGA-GLCGIARKASYPI 329
WG WGE G+IR++R G + G+CG+ + YP+
Sbjct: 177 WGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 136/215 (63%), Gaps = 8/215 (3%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS-GS 176
+P +DWR +GAVTPVKNQGSCG W FSAV +EGI KIRTG L SEQ++LDC S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 177 RGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDV-PTSEL 235
GC GG+ A ++ G+ YPY+ + YC + AA+ + V P +E
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEG 119
Query: 236 ALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLIKN 295
AL Y+++ QPVSV ++A+ F+ Y GG+F GPCGN ++HAV VGYG + Y LIKN
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKN 175
Query: 296 SWGQNWGEGGFIRMRRDVGGA-GLCGIARKASYPI 329
SWG WGE G+IR++R G + G+CG+ + YP+
Sbjct: 176 SWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 132/220 (60%), Gaps = 13/220 (5%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS---G 175
PRS+DWR +G VTPVKNQG CG W FSA A+EG +TGRLISLSEQ ++DCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 176 SRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSEL 235
+ GC GG MD AF Y+ + GL E YPY+ E C + A + D+P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-KYSVANDTGFVDIPKQEK 120
Query: 236 ALRYAVSR-QPVSVAIDASSPGFRYYSGGVFAGP--CGNNLNHAVTIVGYG----SSNEG 288
AL AV+ P+SVAIDA F +Y G++ P +++H V +VGYG S+
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 180
Query: 289 PYWLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
YWL+KNSWG+ WG GG+++M +D CGIA ASYP
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 218
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 136/215 (63%), Gaps = 8/215 (3%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS-GS 176
+P +DWR +GAVTPVKNQGSCG W FSAV +EGI KIRTG L SEQ++LDC S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 177 RGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDV-PTSEL 235
GC GG+ A ++ G+ YPY+ + YC + AA+ + V P +E
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEG 119
Query: 236 ALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLIKN 295
AL Y+++ QPVSV ++A+ F+ Y GG+F GPCGN ++HAV VGYG + Y LIKN
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKN 175
Query: 296 SWGQNWGEGGFIRMRRDVGGA-GLCGIARKASYPI 329
SWG WGE G+IR++R G + G+CG+ + YP+
Sbjct: 176 SWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 191 bits (484), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 141/214 (65%), Gaps = 4/214 (1%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCSG-S 176
LP ++DWR +GAVTPV++QGSCG CW FSAVA VEGI KIRTG+L+ LSEQ+++DC S
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 177 RGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDV-PTSEL 235
GC GG+ A Y+ ++ G+ YPY+ ++G C ++ + V P +E
Sbjct: 61 HGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEG 119
Query: 236 ALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLIKN 295
L A+++QPVSV +++ F+ Y GG+F GPCG ++HAVT VGYG S Y LIKN
Sbjct: 120 NLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYILIKN 179
Query: 296 SWGQNWGEGGFIRMRRDVGGA-GLCGIARKASYP 328
SWG WGE G+IR++R G + G+CG+ + + YP
Sbjct: 180 SWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 213
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 140/214 (65%), Gaps = 4/214 (1%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCSG-S 176
LP ++DWR +GAVTPV++QGSCG CW FSAVA VEGI KIRTG+L+ LSEQ+++DC S
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 177 RGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDV-PTSEL 235
GC GG+ A Y+ ++ G+ YPY+ ++G C ++ + V P +E
Sbjct: 61 HGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEG 119
Query: 236 ALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLIKN 295
L A+++QPVSV +++ F+ Y GG+F GPCG + HAVT VGYG S Y LIKN
Sbjct: 120 NLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKGYILIKN 179
Query: 296 SWGQNWGEGGFIRMRRDVGGA-GLCGIARKASYP 328
SWG WGE G+IR++R G + G+CG+ + + YP
Sbjct: 180 SWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 213
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 161/317 (50%), Gaps = 15/317 (4%)
Query: 22 ISAKHELWMAQSARTYKNQAEKAMXXXXXXXXXXXXXXXXX---EGNQTYKLSLNEFADL 78
++ K E + AR+Y N E+ +G +Y L +N F D+
Sbjct: 18 VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDM 77
Query: 79 TDEEFIASHTGYKMPTRNISNQSQSYANNWFGYPDSRRGLPRSIDWRARGAVTPVKNQGS 138
T EE A G MP N G S R P S DWR +G V+PVKNQGS
Sbjct: 78 TPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVR-YPASFDWRDQGMVSPVKNQGS 136
Query: 139 CGCCWIFSAVAAVEGITKIRTGRLI--SLSEQQVLDC-SGSRGCYGGWMDDAFSYIIRSQ 195
CG W FS+ A+E KI G S+SEQQ++DC + GC GGWM+DAF+Y+ ++
Sbjct: 137 CGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQNG 196
Query: 196 GLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDV--PTSELALRYAVSRQPVSVAIDAS 253
G+ E YPY+ +G C++ + AAR+ Y + P + ++ PV+VA DA
Sbjct: 197 GIDSEGAYPYEMADGNCHYDPNQV-AARLSGYVYLSGPDENMLADMVATKGPVAVAFDAD 255
Query: 254 SPGFRYYSGGVFAGPC--GNNLNHAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRMRR 311
P F YSGGV+ P N HAV IVGYG+ N YWL+KNSWG WG G+ ++ R
Sbjct: 256 DP-FGSYSGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIAR 314
Query: 312 DVGGAGLCGIARKASYP 328
+ CGIA AS P
Sbjct: 315 NANNH--CGIAGVASVP 329
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 135/215 (62%), Gaps = 8/215 (3%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS-GS 176
+P +DWR +GAVTPVKNQGSCG W FSAV +EGI KIRTG L SEQ++LDC S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 177 RGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDV-PTSEL 235
GC GG+ A ++ G+ YPY+ + YC + AA+ + V P ++
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 236 ALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLIKN 295
AL Y+++ QPVSV + A+ F+ Y GG+F GPCGN ++HAV VGYG + Y LIKN
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKN 175
Query: 296 SWGQNWGEGGFIRMRRDVGGA-GLCGIARKASYPI 329
SWG WGE G+IR++R G + G+CG+ + YP+
Sbjct: 176 SWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/217 (47%), Positives = 134/217 (61%), Gaps = 10/217 (4%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS---G 175
PRS+DWR +G VTPVKNQG CG + FSA A+EG +TGRLISLSEQ ++DCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 176 SRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSEL 235
+ GC GG MD AF Y+ + GL E YPY+ E C + A + D+P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-KYSVANDVGFVDIPKQEK 120
Query: 236 ALRYAVSRQ-PVSVAIDASSPGFRYYSGGVF--AGPCGNNLNHAVTIVGYGS-SNEGPYW 291
AL AV+ P+SVAIDA F +Y G++ + ++LNHA+ +VGYG SN YW
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKYW 180
Query: 292 LIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
L+KNSWG+ WG GG+++M +D CGIA ASYP
Sbjct: 181 LVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 215
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 138/218 (63%), Gaps = 10/218 (4%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDC-SGSR 177
P SIDWR +GAVT VK+QG+CG CW F A A+EGI I TGRLIS+SEQQ++DC +
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 178 GCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSELAL 237
GG DDAF ++I + G+ + YPY +G C+ + AARI Y +VP S AL
Sbjct: 62 XXXGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNK--PIAARIDGYTNVPNSSSAL 119
Query: 238 RYAVSRQPVSVAIDASSPGFRYYSG-GVFAG-PCGNN---LNHAVTIVGYGSS-NEGPYW 291
AV++QPVSV I SS F+ Y+G G+FAG C ++ ++H V IVGYGS+ YW
Sbjct: 120 LDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADYW 179
Query: 292 LIKNSWGQNWGEGGFIRMRRDVG-GAGLCGIARKASYP 328
++KNSWG WG G+I +RR+ G+C I SYP
Sbjct: 180 IVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYP 217
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 187 bits (475), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 142/215 (66%), Gaps = 8/215 (3%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDC-SGSR 177
P SID+R +G VTPVKNQG CG CW FS+V A+EG K TG L++L+ Q ++DC S +
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEND 61
Query: 178 GCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPT-SELA 236
GC GG+M +AF Y+ R++G+ E YPY ++ C + KAA+ R Y+++P +E A
Sbjct: 62 GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTG-KAAKCRGYREIPEGNEAA 120
Query: 237 LRYAVSR-QPVSVAIDASSPGFRYYSGGVFAGP-CGNN-LNHAVTIVGYGSSNEGPYWLI 293
L+ AV+ PVSVAIDAS F++YS GV+ C ++ LNHAV VGYG +W+I
Sbjct: 121 LKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKHWII 180
Query: 294 KNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
KNSWG++WG G+I M R+ A CGIA AS+P
Sbjct: 181 KNSWGESWGNAGYILMARNKNNA--CGIANLASFP 213
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 131/221 (59%), Gaps = 12/221 (5%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS--- 174
LP+S+DWR +G VTPVKNQ CG CW FSA A+EG +TG+L+SLSEQ ++DCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 175 GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSE 234
G++GC GG+M AF Y+ + GL E YPY + C ++ A P E
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPGKE 120
Query: 235 LALRYAVSR-QPVSVAIDASSPGFRYYSGGVFAGP--CGNNLNHAVTIVGYG----SSNE 287
AL AV+ P+SVA+DA F++Y G++ P NL+H V +VGYG +S+
Sbjct: 121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDN 180
Query: 288 GPYWLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
YWL+KNSWG WG G++++ +D CGIA ASYP
Sbjct: 181 SKYWLVKNSWGPEWGSNGYVKIAKDKNNH--CGIATAASYP 219
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 133/222 (59%), Gaps = 14/222 (6%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS--- 174
LP+S+DWR +G VTPVKNQ CG W FSA A+EG +TG+L+SLSEQ ++DCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 175 GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDV-PTS 233
G++GC GG+M AF Y+ + GL E YPY + C + R A+ + V P
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKY-RPENSVAQDTGFTVVAPGK 119
Query: 234 ELALRYAVSR-QPVSVAIDASSPGFRYYSGGVFAGP--CGNNLNHAVTIVGYG----SSN 286
E AL AV+ P+SVA+DA F++Y G++ P NL+H V +VGYG +S+
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 287 EGPYWLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
YWL+KNSWG WG G++++ +D CGIA ASYP
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKDKNNH--CGIATAASYP 219
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 135/215 (62%), Gaps = 4/215 (1%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS-GS 176
LP S+DWRA+GAVTPVK+QG C CW FS VA VEGI KI+TG L+ LSEQ+++DC S
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQS 60
Query: 177 RGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTS-EL 235
GC G+ + Y+ ++ G+ YPY ++ C + + V ++ E
Sbjct: 61 YGCNRGYQSTSLQYVAQN-GIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNEG 119
Query: 236 ALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLIKN 295
+L A++ QPVSV ++++ F+ Y GG+F G CG ++HAVT VGYG S Y LIKN
Sbjct: 120 SLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYILIKN 179
Query: 296 SWGQNWGEGGFIRMRRDVGGA-GLCGIARKASYPI 329
SWG WGE G+IR+RR G + G+CG+ R + YPI
Sbjct: 180 SWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPI 214
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/270 (39%), Positives = 146/270 (54%), Gaps = 17/270 (6%)
Query: 67 TYKLSLNEFADLTDEEFIASHTGYKMPTRNISNQSQSYANNWFGYPDSRRGLPRSIDWRA 126
TY L LN+F D+T EEF A + +I + Y N R +P IDWR
Sbjct: 48 TYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEAN-------NRAVPDKIDWRE 100
Query: 127 RGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS---GSRGCYGGW 183
G VT VK+QG+CG W FS +EG IS SEQQ++DCS G+ GC GG
Sbjct: 101 SGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGL 160
Query: 184 MDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPT-SELALRYAVS 242
M++A+ Y ++ GL E YPY EG C + + + A++ + V + SE+ L+ V
Sbjct: 161 MENAYQY-LKQFGLETESSYPYTAVEGQCRYNK-QLGVAKVTGFYTVHSGSEVELKNLVG 218
Query: 243 RQ-PVSVAIDASSPGFRYYSGGVFAGPCGN-NLNHAVTIVGYGSSNEGPYWLIKNSWGQN 300
+ P +VA+D S Y SG + C +NHAV VGYG+ YW++KNSWG +
Sbjct: 219 AEGPAAVAVDVESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLS 278
Query: 301 WGEGGFIRMRRDVGGAGLCGIARKASYPIA 330
WGE G+IRM R+ G +CGIA AS P+
Sbjct: 279 WGERGYIRMVRNRG--NMCGIASLASLPMV 306
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 136/214 (63%), Gaps = 8/214 (3%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS-GS 176
+P SIDWR +GAVTPV+NQG CG CW FS+VAAVEGI KI TG+L+SLSEQ++LDC S
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 177 RGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVP-TSEL 235
GC GG+ A Y+ S G+ + YPY+ + C + + VP +E
Sbjct: 61 YGCRGGFPLYALQYVANS-GIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQ 119
Query: 236 ALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYWLIKN 295
AL ++ QPVS+ ++A F+ Y GG+FAGPCG +++HAV VGYG+ Y LIKN
Sbjct: 120 ALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGYGND----YILIKN 175
Query: 296 SWGQNWGEGGFIRMRRDVGGA-GLCGIARKASYP 328
SWG WGEGG+IR++R G G CG+ + +P
Sbjct: 176 SWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFP 209
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 131/224 (58%), Gaps = 16/224 (7%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDC-SGSR 177
P S DW +G +T VK QG CG W FSA A+E I TG L+SLSEQ+++DC S
Sbjct: 3 PESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDESE 62
Query: 178 GCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSY--------QD 229
GCY GW +F ++++ G+ E YPY+ R+G C K I +Y
Sbjct: 63 GCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVT-IDNYGVQILSNEST 121
Query: 230 VPTSELALRYAVSRQPVSVAIDASSPGFRYYSGGVF-AGPCGN--NLNHAVTIVGYGSSN 286
+E +L+ V QP+SV+IDA F +YSGG++ G C + +NH V IVGYGS +
Sbjct: 122 ESEAESSLQSFVLEQPISVSIDAKD--FHFYSGGIYDGGNCSSPYGINHFVLIVGYGSED 179
Query: 287 EGPYWLIKNSWGQNWGEGGFIRMRRDVGG-AGLCGIARKASYPI 329
YW+ KNSWG++WG G+IR++R+ G G+CG+ ASYPI
Sbjct: 180 GVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPI 223
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 123/219 (56%), Gaps = 11/219 (5%)
Query: 119 PRSIDWRARGA-VTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS--- 174
P S+DWR +G V+PVKNQGSCG CW FS A+E I TG+++SL+EQQ++DC+
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 175 GSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSE 234
+ GC GG AF YI ++G+ E YPY+ ++ +C +Q A E
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDE 121
Query: 235 LALRYAVSR-QPVSVAIDASSPGFRYYSGGVFAGPCG---NNLNHAVTIVGYGSSNEGPY 290
A+ AV+ PVS A + ++ Y G + C + +NHAV VGYG N PY
Sbjct: 122 EAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPY 181
Query: 291 WLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYPI 329
W++KNSWG WG G+ + R G +CG+A ASYPI
Sbjct: 182 WIVKNSWGPQWGMNGYFLIER---GKNMCGLAACASYPI 217
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 127/222 (57%), Gaps = 20/222 (9%)
Query: 123 DWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS-GSRGCYG 181
DWR VTPVK+Q +CG CW FS++ +VE IR +LI+LSEQ+++DCS + GC G
Sbjct: 23 DWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNG 82
Query: 182 GWMDDAFSYIIRSQGLTDERVYPY-QRREGYCNWQRGAMKAARIRSYQDVPTSEL--ALR 238
G +++AF +I G+ + YPY CN R K I++Y VP ++L ALR
Sbjct: 83 GLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYG-IKNYLSVPDNKLKEALR 141
Query: 239 YAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYG----------SSNEG 288
+ P+S+++ A S F +Y G+F G CG+ LNHAV +VG+G +
Sbjct: 142 FL---GPISISV-AVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKH 197
Query: 289 PYWLIKNSWGQNWGEGGFIRMRRDVGGAG-LCGIARKASYPI 329
Y++IKNSWGQ WGE GFI + D G CG+ A P+
Sbjct: 198 YYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 239
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 116/200 (58%), Gaps = 10/200 (5%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCSG-SR 177
P ++DWR +GAVTPVK+QG CG CW FS + +EG ++ L+SLSEQ ++ C
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDF 61
Query: 178 GCYGGWMDDAFSYIIRSQG--LTDERVYPYQRREG---YCNWQRGAMKAARIRSYQDVPT 232
GC GG MD+AF++I+ S G + E YPY G C G A I + D+P
Sbjct: 62 GCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQ-MNGHEIGAAITDHVDLPQ 120
Query: 233 SELAL-RYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYW 291
E A+ Y P+++A+DA+S F Y+GG+ L+H V +VGY ++ PYW
Sbjct: 121 DEDAIAAYLAENGPLAIAVDATS--FMDYNGGILTSCTSEQLDHGVLLVGYNDASNPPYW 178
Query: 292 LIKNSWGQNWGEGGFIRMRR 311
+IKNSW WGE G+IR+ +
Sbjct: 179 IIKNSWSNMWGEDGYIRIEK 198
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 124/222 (55%), Gaps = 20/222 (9%)
Query: 123 DWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS-GSRGCYG 181
DWR G VTPVK+Q CG CW FS+V +VE IR L SEQ+++DCS + GCYG
Sbjct: 25 DWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGCYG 84
Query: 182 GWMDDAFSYIIRSQGLTDERVYPY-QRREGYCNWQRGAMKAARIRSYQDVPTSEL--ALR 238
G++ +AF +I GL + YPY CN +R + I+SY +P + ALR
Sbjct: 85 GYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKR-CNERYTIKSYVSIPDDKFKEALR 143
Query: 239 YAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSS---NEGP------ 289
Y P+S++I A+S F +Y GG + G CG NHAV +VGYG NE
Sbjct: 144 YL---GPISISI-AASDDFAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRMEKF 199
Query: 290 -YWLIKNSWGQNWGEGGFIRMRRDVGG-AGLCGIARKASYPI 329
Y++IKNSWG +WGEGG+I + D G C I +A P+
Sbjct: 200 YYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPL 241
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 154 bits (388), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 103/171 (60%), Gaps = 7/171 (4%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS---G 175
PRS+DWR +G VTPVKNQG CG CW FSA A+EG +TGRLISLSEQ ++DCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 176 SRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSEL 235
+ GC GG MD AF Y+ + GL E YPY+ E C + A + D+P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-KYSVANDTGFVDIPKQEK 120
Query: 236 ALRYAVSR-QPVSVAIDASSPGFRYYSGGVFAGP--CGNNLNHAVTIVGYG 283
AL AV+ P+SVAIDA F +Y G++ P +++H V +VGYG
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 126/222 (56%), Gaps = 20/222 (9%)
Query: 123 DWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS-GSRGCYG 181
DWR VTPVK+Q +CG W FS++ +VE IR +LI+LSEQ+++DCS + GC G
Sbjct: 22 DWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNG 81
Query: 182 GWMDDAFSYIIRSQGLTDERVYPY-QRREGYCNWQRGAMKAARIRSYQDVPTSEL--ALR 238
G +++AF +I G+ + YPY CN R K I++Y VP ++L ALR
Sbjct: 82 GLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYG-IKNYLSVPDNKLKEALR 140
Query: 239 YAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYG----------SSNEG 288
+ P+S+++ A S F +Y G+F G CG+ LNHAV +VG+G +
Sbjct: 141 FL---GPISISV-AVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKH 196
Query: 289 PYWLIKNSWGQNWGEGGFIRMRRDVGGAG-LCGIARKASYPI 329
Y++IKNSWGQ WGE GFI + D G CG+ A P+
Sbjct: 197 YYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 238
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 102/171 (59%), Gaps = 7/171 (4%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCS---G 175
PRS+DWR +G VTPVKNQG CG W FSA A+EG +TGRLISLSEQ ++DCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 176 SRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSEL 235
+ GC GG MD AF Y+ + GL E YPY+ E C + A + D+P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-KYSVANDTGFVDIPKQEK 120
Query: 236 ALRYAVSR-QPVSVAIDASSPGFRYYSGGVFAGP--CGNNLNHAVTIVGYG 283
AL AV+ P+SVAIDA F +Y G++ P +++H V +VGYG
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 120/218 (55%), Gaps = 13/218 (5%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCSGS-R 177
P ++DWRARGAVT VK+QG CG CW FSA+ VE + L +LSEQ ++ C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 178 GCYGGWMDDAFSYIIRSQ--GLTDERVYPYQRREGY---CNWQRGAMKAARIRSYQDVPT 232
GC GG M++AF +I++ + E YPY EG C G A I + ++P
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCT-TSGHTVGATITGHVELPQ 120
Query: 233 SELALR-YAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYW 291
E + + PV+VA+DASS + Y+GGV L+H V +VGY S PYW
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDASS--WMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYW 178
Query: 292 LIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYPI 329
+IKNSW WGE G+IR+ + G+ C + +AS +
Sbjct: 179 IIKNSWTTQWGEEGYIRIAK---GSNQCLVKEEASSAV 213
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 120/218 (55%), Gaps = 13/218 (5%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCSGS-R 177
P ++DWRARGAVT VK+QG CG CW FSA+ VE + L +LSEQ ++ C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 178 GCYGGWMDDAFSYIIRSQ--GLTDERVYPYQRREGY---CNWQRGAMKAARIRSYQDVPT 232
GC GG M++AF +I++ + E YPY EG C G A I + ++P
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCT-TSGHTVGATITGHVELPQ 120
Query: 233 SELALR-YAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYW 291
E + + PV+VA+DASS + Y+GGV L+H V +VGY S PYW
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDASS--WMTYTGGVMTSCVSEALDHGVLLVGYNDSAAVPYW 178
Query: 292 LIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYPI 329
+IKNSW WGE G+IR+ + G+ C + +AS +
Sbjct: 179 IIKNSWTTQWGEEGYIRIAK---GSNQCLVKEEASSAV 213
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 119/218 (54%), Gaps = 13/218 (5%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCSGS-R 177
P ++DWRARGAVT VK+QG CG CW FSA+ VE + L +L+EQ ++ C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 178 GCYGGWMDDAFSYIIRSQ--GLTDERVYPYQRREGY---CNWQRGAMKAARIRSYQDVPT 232
GC GG M++AF +I++ + E YPY EG C G A I + ++P
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCT-TSGHTVGATITGHVELPQ 120
Query: 233 SELALR-YAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYW 291
E + + PV+VA+DASS + Y+GGV L+H V +VGY PYW
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDASS--WMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYW 178
Query: 292 LIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYPI 329
+IKNSW WGE G+IR+ + G+ C + +AS +
Sbjct: 179 IIKNSWTTQWGEEGYIRIAK---GSNQCLVKEEASSAV 213
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 119/218 (54%), Gaps = 13/218 (5%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCSGS-R 177
P ++DWRARGAVT VK+QG CG CW FSA+ VE + L +L+EQ ++ C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 178 GCYGGWMDDAFSYIIRSQ--GLTDERVYPYQRREGY---CNWQRGAMKAARIRSYQDVPT 232
GC GG M++AF +I++ + E YPY EG C G A I + ++P
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCT-TSGHTVGATITGHVELPQ 120
Query: 233 SELALR-YAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNLNHAVTIVGYGSSNEGPYW 291
E + + PV+VA+DASS + Y+GGV L+H V +VGY PYW
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDASS--WMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYW 178
Query: 292 LIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYPI 329
+IKNSW WGE G+IR+ + G+ C + +AS +
Sbjct: 179 IIKNSWTTQWGEEGYIRIAK---GSNQCLVKEEASSAV 213
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 114/216 (52%), Gaps = 10/216 (4%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCSG-SR 177
P DWR++GAVT VK+QG CG CW FS VEG + G L+SLSEQ++LDC +
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61
Query: 178 GCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSELAL 237
C GG +A+S I GL E Y YQ C + K S + +
Sbjct: 62 ACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELSQNEQKLA 121
Query: 238 RYAVSRQPVSVAIDASSPGFRYYSGGV---FAGPCGNNL-NHAVTIVGYGSSNEGPYWLI 293
+ R P+SVAI+A G ++Y G+ C L +HAV +VGYG ++ P+W I
Sbjct: 122 AWLAKRGPISVAINAF--GMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAI 179
Query: 294 KNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYPI 329
KNSWG +WGE G+ + R G+G CG+ AS +
Sbjct: 180 KNSWGTDWGEKGYYYLHR---GSGACGVNTMASSAV 212
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 102/195 (52%), Gaps = 9/195 (4%)
Query: 118 LPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCSGSR 177
+P +D R+ VTP++ QG CG CW FS VAA E + LSEQ+++DC+
Sbjct: 11 VPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCASQH 70
Query: 178 GCYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSY-QDVPTSELA 236
GC+G + Y I+ G+ +ER YPY RE C +R + I +Y Q P
Sbjct: 71 GCHGDTIPRGIEY-IQQNGVVEERSYPYVAREQRC--RRPNSQHYGISNYCQIYPPDVKQ 127
Query: 237 LRYAVSRQPVSVAIDASSP---GFRYYSG-GVFAGPCGNNLN-HAVTIVGYGSSNEGPYW 291
+R A+++ ++A+ F++Y G + G N HAV IVGYGS+ YW
Sbjct: 128 IREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHAVNIVGYGSTQGDDYW 187
Query: 292 LIKNSWGQNWGEGGF 306
+++NSW WG+ G+
Sbjct: 188 IVRNSWDTTWGDSGY 202
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 9/194 (4%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCSGSRG 178
P ID R VTP++ QG CG CW FS VAA E + + L+EQ+++DC+ G
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQHG 70
Query: 179 CYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSY-QDVPTSELAL 237
C+G + Y I+ G+ E Y Y RE C +R + I +Y Q P + +
Sbjct: 71 CHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNVNKI 127
Query: 238 RYAVSRQPVSVAI---DASSPGFRYYSG-GVFAGPCGNNLN-HAVTIVGYGSSNEGPYWL 292
R A+++ ++A+ FR+Y G + G N HAV IVGY ++ YW+
Sbjct: 128 REALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWI 187
Query: 293 IKNSWGQNWGEGGF 306
++NSW NWG+ G+
Sbjct: 188 VRNSWDTNWGDNGY 201
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 9/194 (4%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCSGSRG 178
P ID R VTP++ QG CG CW FS VAA E + + L+EQ+++DC+ G
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQHG 70
Query: 179 CYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSY-QDVPTSELAL 237
C+G + Y I+ G+ E Y Y RE C +R + I +Y Q P + +
Sbjct: 71 CHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNANKI 127
Query: 238 RYAVSRQPVSVAI---DASSPGFRYYSG-GVFAGPCGNNLN-HAVTIVGYGSSNEGPYWL 292
R A+++ ++A+ FR+Y G + G N HAV IVGY ++ YW+
Sbjct: 128 REALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWI 187
Query: 293 IKNSWGQNWGEGGF 306
++NSW NWG+ G+
Sbjct: 188 VRNSWDTNWGDNGY 201
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 117/248 (47%), Gaps = 19/248 (7%)
Query: 65 NQTYKLSLNEFADLTDEEFIASHTGYKMPTRNISNQSQSYANNWFGYPDSRRGLPRSIDW 124
N LSL+EF + F+ S ++ +++ A + G P ID
Sbjct: 47 NHLSDLSLDEFKN----RFLMSAEAFEHLKTQFDLNAETNACSING------NAPAEIDL 96
Query: 125 RARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCSGSRGCYGGWM 184
R VTP++ QG CG W FS VAA E + + L+EQ+++DC+ GC+G +
Sbjct: 97 RQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCASQHGCHGDTI 156
Query: 185 DDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSY-QDVPTSELALRYAVSR 243
Y I+ G+ E Y Y RE C +R + I +Y Q P + +R A+++
Sbjct: 157 PRGIEY-IQHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNANKIREALAQ 213
Query: 244 QPVSVAI---DASSPGFRYYSG-GVFAGPCGNNLN-HAVTIVGYGSSNEGPYWLIKNSWG 298
++A+ FR+Y G + G N HAV IVGY ++ YW+++NSW
Sbjct: 214 THSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWD 273
Query: 299 QNWGEGGF 306
NWG+ G+
Sbjct: 274 TNWGDNGY 281
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 98/194 (50%), Gaps = 9/194 (4%)
Query: 119 PRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCSGSRG 178
P ID R VTP++ QG CG W FS VAA E + + L+EQ+++DC+ G
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQHG 70
Query: 179 CYGGWMDDAFSYIIRSQGLTDERVYPYQRREGYCNWQRGAMKAARIRSY-QDVPTSELAL 237
C+G + Y I+ G+ E Y Y RE C +R + I +Y Q P + +
Sbjct: 71 CHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNANKI 127
Query: 238 RYAVSRQPVSVAI---DASSPGFRYYSG-GVFAGPCGNNLN-HAVTIVGYGSSNEGPYWL 292
R A+++ ++A+ FR+Y G + G N HAV IVGY ++ YW+
Sbjct: 128 REALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWI 187
Query: 293 IKNSWGQNWGEGGF 306
++NSW NWG+ G+
Sbjct: 188 VRNSWDTNWGDNGY 201
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 112/236 (47%), Gaps = 30/236 (12%)
Query: 118 LPRSIDWR-ARGA--VTPVKNQGSCGCCWIFSAVAAVEGITKIRTG--RLISLSEQQVLD 172
LP S DWR RG V+PV+NQ SCG C+ F+++ +E +I T + LS Q+V+
Sbjct: 206 LPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVS 265
Query: 173 CSG-SRGCYGGWMDDAFSYIIRSQ-----GLTDERVYPYQRREGYCNWQRGAMK----AA 222
CS ++GC GG F Y+I + G+ +E +PY + C + ++
Sbjct: 266 CSPYAQGCDGG-----FPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLRYYSSEY 320
Query: 223 RIRSYQDVPTSELALRYAVSRQ-PVSVAIDASSPGFRYYSGGVFAGPCGNNLN------H 275
+E ++ + + P++VA + Y+SG + N H
Sbjct: 321 YYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNH 380
Query: 276 AVTIVGYGSSNEG--PYWLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYPI 329
AV +VGYG YW++KNSWG WGE G+ R+RR + IA A+ PI
Sbjct: 381 AVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAM-AAIPI 435
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 111/237 (46%), Gaps = 32/237 (13%)
Query: 118 LPRSIDWR---ARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTGRLIS--LSEQQVLD 172
LP S DWR V+PV+NQ SCG C+ F+++ +E +I T + LS Q+V+
Sbjct: 207 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 266
Query: 173 CSG-SRGCYGGWMDDAFSYIIRSQ-----GLTDERVYPYQRREGYCNWQRGAMKA----- 221
CS ++GC GG F Y+I + GL +E +PY + C + +
Sbjct: 267 CSQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEY 321
Query: 222 ARIRSYQDVPTSELALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNN-------LN 274
+ + L V P++VA + F +Y G++ + N
Sbjct: 322 HYVGGFYGGCNEALMKLELVHHGPMAVAFEVYD-DFLHYKKGIYHHTGLRDPFNPFELTN 380
Query: 275 HAVTIVGYGSSNEG--PYWLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYPI 329
HAV +VGYG+ + YW++KNSWG WGE G+ R+RR + IA A+ PI
Sbjct: 381 HAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT-PI 436
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 106/245 (43%), Gaps = 44/245 (17%)
Query: 118 LPRSIDWRARGAVTP----VKNQGSCGCCWIFSAVAAVEGITKIRTGRLIS--LSEQQVL 171
LP S D R + P +++QGSCG CW F AV A+ I T +S +S + +L
Sbjct: 64 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 123
Query: 172 DCSGS---RGCYGGWMDDAFSYIIR----SQGLTDERV----YPYQRREGYCNWQRGAM- 219
C GS GC GG+ +A+++ R S GL + V Y E + N R
Sbjct: 124 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 183
Query: 220 ------KAARIRSYQDVPTSELALRYAV-------SRQPVSVAIDASSP---------GF 257
K ++I PT + Y S + + I + P F
Sbjct: 184 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDF 243
Query: 258 RYYSGGVFAGPCGNNL-NHAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRMRRDVGGA 316
Y GV+ G + HA+ I+G+G N PYWL+ NSW +WG+ GF ++ R G
Sbjct: 244 LLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR---GQ 300
Query: 317 GLCGI 321
CGI
Sbjct: 301 DHCGI 305
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 107/249 (42%), Gaps = 44/249 (17%)
Query: 118 LPRSIDWRARGAVTP----VKNQGSCGCCWIFSAVAAVEGITKIRTGRLIS--LSEQQVL 171
LP S D R + P +++QGSCG CW F AV A+ I T +S +S + +L
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 172 DCSGS---RGCYGGWMDDAFSYIIR----SQGLTDERV----YPYQRREGYCNWQRGAM- 219
C GS GC GG+ +A+++ R S GL + V Y E + N R
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 121
Query: 220 ------KAARIRSYQDVPTSELALRYAV-------SRQPVSVAIDASSP---------GF 257
K ++I PT + Y S + + I + P F
Sbjct: 122 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDF 181
Query: 258 RYYSGGVFAGPCGNNL-NHAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRMRRDVGGA 316
Y GV+ G + HA+ I+G+G N PYWL+ NSW +WG+ GF ++ R G
Sbjct: 182 LLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR---GQ 238
Query: 317 GLCGIARKA 325
CGI +
Sbjct: 239 DHCGIESEV 247
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 107/249 (42%), Gaps = 44/249 (17%)
Query: 118 LPRSIDWRARGAVTP----VKNQGSCGCCWIFSAVAAVEGITKIRTGRLIS--LSEQQVL 171
LP S D R + P +++QGSCG CW F AV A+ I T +S +S + +L
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 172 DCSGS---RGCYGGWMDDAFSYIIR----SQGLTDERV----YPYQRREGYCNWQRGAM- 219
C GS GC GG+ +A+++ R S GL + V Y E + N R
Sbjct: 63 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 122
Query: 220 ------KAARIRSYQDVPTSELALRYAV-------SRQPVSVAIDASSP---------GF 257
K ++I PT + Y S + + I + P F
Sbjct: 123 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDF 182
Query: 258 RYYSGGVFAGPCGNNL-NHAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRMRRDVGGA 316
Y GV+ G + HA+ I+G+G N PYWL+ NSW +WG+ GF ++ R G
Sbjct: 183 LLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR---GQ 239
Query: 317 GLCGIARKA 325
CGI +
Sbjct: 240 DHCGIESEV 248
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 107/249 (42%), Gaps = 44/249 (17%)
Query: 118 LPRSIDWRARGAVTP----VKNQGSCGCCWIFSAVAAVEGITKIRTGRLIS--LSEQQVL 171
LP S D R + P +++QGSCG CW F AV A+ I T +S +S + +L
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 172 DCSGS---RGCYGGWMDDAFSYIIR----SQGLTDERV----YPYQRREGYCNWQRGAM- 219
C GS GC GG+ +A+++ R S GL + V Y E + N R
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 220 ------KAARIRSYQDVPTSELALRYAV-------SRQPVSVAIDASSP---------GF 257
K ++I PT + Y S + + I + P F
Sbjct: 121 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDF 180
Query: 258 RYYSGGVFAGPCGNNL-NHAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRMRRDVGGA 316
Y GV+ G + HA+ I+G+G N PYWL+ NSW +WG+ GF ++ R G
Sbjct: 181 LLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR---GQ 237
Query: 317 GLCGIARKA 325
CGI +
Sbjct: 238 DHCGIESEV 246
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 113/250 (45%), Gaps = 48/250 (19%)
Query: 118 LPRSIDWRARGAVTP----VKNQGSCGCCWIFSAVAAVEGITKIRT-GRL-ISLSEQQVL 171
LP S D R + + P +++QGSCG CW F AV A+ I T GR+ + +S + +L
Sbjct: 7 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 66
Query: 172 DCSGSR---GCYGGWMDDAFSYIIRSQGLTDERVY-------PYQRR--EGYCNWQRGAM 219
C G + GC GG+ A+++ R +GL VY PY E + N R
Sbjct: 67 TCCGIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPC 125
Query: 220 -------------KAARIRSYQD----------VPTSELALRYAVSRQ-PVSVAIDASSP 255
+A SY++ V SE + + + PV A S
Sbjct: 126 TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSD 185
Query: 256 GFRYYSGGVFAGPCGNNLN-HAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRMRRDVG 314
F Y GV+ G+ + HA+ I+G+G N PYWL+ NSW +WG+ GF ++ R
Sbjct: 186 -FLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILR--- 241
Query: 315 GAGLCGIARK 324
G CGI +
Sbjct: 242 GENHCGIESE 251
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 112/247 (45%), Gaps = 48/247 (19%)
Query: 118 LPRSIDWRARGAVTP----VKNQGSCGCCWIFSAVAAVEGITKIRT-GRL-ISLSEQQVL 171
LP S D R + + P +++QGSCG CW F AV A+ I T GR+ + +S + +L
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 172 DCSGSR---GCYGGWMDDAFSYIIRSQGLTDERVY-------PYQRR--EGYCNWQRGAM 219
C G + GC GG+ A+++ R +GL VY PY E + N R
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPC 119
Query: 220 -------------KAARIRSYQD----------VPTSELALRYAVSRQ-PVSVAIDASSP 255
+A SY++ V SE + + + PV A S
Sbjct: 120 TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSD 179
Query: 256 GFRYYSGGVFAGPCGNNLN-HAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRMRRDVG 314
F Y GV+ G+ + HA+ I+G+G N PYWL+ NSW +WG+ GF ++ R
Sbjct: 180 -FLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILR--- 235
Query: 315 GAGLCGI 321
G CGI
Sbjct: 236 GENHCGI 242
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 105/257 (40%), Gaps = 40/257 (15%)
Query: 109 FGYPDSRRGLPRSID----WRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTG-RLI 163
F ++R LP S D W + + +Q +CG CW +A +A+ G + +
Sbjct: 85 FTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDV 144
Query: 164 SLSEQQVLDCSGS--RGCYGGWMDDAFSYIIRSQGLTDERVYPY---------QRREGYC 212
+S +L C GC GG D A++Y S GL + PY + + GY
Sbjct: 145 HISAGDLLACCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYP 203
Query: 213 NWQRGAMKAARIRSYQDVPTSELA----------------LRYAVSRQPVSVAIDASSPG 256
+ + D PT + +R R P VA D
Sbjct: 204 PCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYE-D 262
Query: 257 FRYYSGGVFAGPCGNNLN-HAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRMRRDVGG 315
F Y+ GV+ G L HAV +VG+G+SN PYW I NSW WG G+ +RR G
Sbjct: 263 FIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRR---G 319
Query: 316 AGLCGIAR--KASYPIA 330
+ CGI A P+A
Sbjct: 320 SSECGIEDGGSAGIPLA 336
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 105/257 (40%), Gaps = 40/257 (15%)
Query: 109 FGYPDSRRGLPRSID----WRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTG-RLI 163
F ++R LP S D W + + +Q +CG CW +A +A+ G + +
Sbjct: 62 FTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDV 121
Query: 164 SLSEQQVLDCSGS--RGCYGGWMDDAFSYIIRSQGLTDERVYPY---------QRREGYC 212
+S +L C GC GG D A++Y S GL + PY + + GY
Sbjct: 122 HISAGDLLACCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYP 180
Query: 213 NWQRGAMKAARIRSYQDVPTSELA----------------LRYAVSRQPVSVAIDASSPG 256
+ + D PT + +R R P VA D
Sbjct: 181 PCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYE-D 239
Query: 257 FRYYSGGVFAGPCGNNLN-HAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRMRRDVGG 315
F Y+ GV+ G L HAV +VG+G+SN PYW I NSW WG G+ +RR G
Sbjct: 240 FIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRR---G 296
Query: 316 AGLCGIAR--KASYPIA 330
+ CGI A P+A
Sbjct: 297 SSECGIEDGGSAGIPLA 313
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 105/245 (42%), Gaps = 44/245 (17%)
Query: 118 LPRSIDWRARGAVTP----VKNQGSCGCCWIFSAVAAVEGITKIRTGRLIS--LSEQQVL 171
LP S D R + P +++QGSCG W F AV A+ I T +S +S + +L
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 172 DCSGS---RGCYGGWMDDAFSYIIR----SQGLTDERV----YPYQRREGYCNWQRGAM- 219
C GS GC GG+ +A+++ R S GL + V Y E + N R
Sbjct: 67 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCT 126
Query: 220 ------KAARIRSYQDVPTSELALRYAV-------SRQPVSVAIDASSP---------GF 257
K ++I PT + Y S + + I + P F
Sbjct: 127 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDF 186
Query: 258 RYYSGGVFAGPCGNNL-NHAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRMRRDVGGA 316
Y GV+ G + HA+ I+G+G N PYWL+ NSW +WG+ GF ++ R G
Sbjct: 187 LLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR---GQ 243
Query: 317 GLCGI 321
CGI
Sbjct: 244 DHCGI 248
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 101/246 (41%), Gaps = 38/246 (15%)
Query: 109 FGYPDSRRGLPRSID----WRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTG-RLI 163
F ++R LP S D W + + +Q +CG CW +A +A+ G + +
Sbjct: 63 FTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDV 122
Query: 164 SLSEQQVLDCSGS--RGCYGGWMDDAFSYIIRSQGLTDERVYPY---------QRREGYC 212
+S +L C GC GG D A++Y S GL + PY + + GY
Sbjct: 123 HISAGDLLACCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYP 181
Query: 213 NWQRGAMKAARIRSYQDVPTSELA----------------LRYAVSRQPVSVAIDASSPG 256
+ + D PT + +R R P VA D
Sbjct: 182 PCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYE-D 240
Query: 257 FRYYSGGVFAGPCGNNLN-HAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRMRRDVGG 315
F Y+ GV+ G L HAV +VG+G+SN PYW I NSW WG G+ +RR G
Sbjct: 241 FIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRR---G 297
Query: 316 AGLCGI 321
+ CGI
Sbjct: 298 SSECGI 303
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 102/237 (43%), Gaps = 45/237 (18%)
Query: 113 DSRRGLPRSIDWRARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTG--RLISLSEQQV 170
DSR+ PR ++ +++Q CG CW F AV A+ + I++G + + LS +
Sbjct: 8 DSRKKWPRC------KSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDL 61
Query: 171 LDCSGS--RGCYGGWMDDAFSYIIRSQGLTDE--------RVYPYQRREGYCN------- 213
L C S GC GG + A+ Y ++ +T YP+ + E +
Sbjct: 62 LSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCG 121
Query: 214 --------WQRGAMKAARIRSYQD---------VPTSELALRYAVSRQ-PVSVAIDASSP 255
++ K + QD V E A++ + + PV
Sbjct: 122 SKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYE- 180
Query: 256 GFRYYSGGVFAGPCGNNLN-HAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRMRR 311
F Y G++ G L HA+ I+G+G N+ PYWLI NSW ++WGE G+ R+ R
Sbjct: 181 DFLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVR 237
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 26/216 (12%)
Query: 118 LPRSIDWRARGAV---TPVKNQG---SCGCCWIFSAVAAV-EGITKIRTGRLIS--LSEQ 168
LP+S DWR V + +NQ CG CW ++ +A+ + I R G S LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 169 QVLDCSGSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRRE---------GYCNWQRGAM 219
V+DC + C GG + Y G+ DE YQ ++ G CN +
Sbjct: 61 NVIDCGNAGSCEGGNDLSVWDYA-HQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECH 119
Query: 220 KAA-----RIRSYQDVPTSELALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNN-L 273
R+ Y + E + + P+S I A+ Y+GG++A +
Sbjct: 120 AIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATER-LANYTGGIYAEYQDTTYI 178
Query: 274 NHAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRM 309
NH V++ G+G S+ YW+++NSWG+ WGE G++R+
Sbjct: 179 NHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 111/247 (44%), Gaps = 48/247 (19%)
Query: 118 LPRSIDWRARGAVTP----VKNQGSCGCCWIFSAVAAVEGITKIRT-GRL-ISLSEQQVL 171
LP S D R + + P +++QGSCG W F AV A+ I T GR+ + +S + +L
Sbjct: 63 LPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 122
Query: 172 DCSGSR---GCYGGWMDDAFSYIIRSQGLTDERVY-------PYQRR--EGYCNWQRGAM 219
C G + GC GG+ A+++ R +GL VY PY E + N R
Sbjct: 123 TCCGIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPC 181
Query: 220 -------------KAARIRSYQD----------VPTSELALRYAVSRQ-PVSVAIDASSP 255
+A SY++ V SE + + + PV A S
Sbjct: 182 TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSD 241
Query: 256 GFRYYSGGVFAGPCGNNLN-HAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRMRRDVG 314
F Y GV+ G+ + HA+ I+G+G N PYWL+ NSW +WG+ GF ++ R
Sbjct: 242 -FLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILR--- 297
Query: 315 GAGLCGI 321
G CGI
Sbjct: 298 GENHCGI 304
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 26/216 (12%)
Query: 118 LPRSIDWRARGAV---TPVKNQG---SCGCCWIFSAVAAV-EGITKIRTGRLIS--LSEQ 168
LP+S DWR V + +NQ CG CW ++ +A+ + I R G S LS Q
Sbjct: 36 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 95
Query: 169 QVLDCSGSRGCYGGWMDDAFSYIIRSQGLTDERVYPYQRRE---------GYCNWQRGAM 219
V+DC + C GG + Y G+ DE YQ ++ G CN +
Sbjct: 96 NVIDCGNAGSCEGGNDLSVWDYA-HQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECH 154
Query: 220 KAA-----RIRSYQDVPTSELALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNN-L 273
R+ Y + E + + P+S I A+ Y+GG++A +
Sbjct: 155 AIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATER-LANYTGGIYAEYQDTTYI 213
Query: 274 NHAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRM 309
NH V++ G+G S+ YW+++NSWG+ WGE G++R+
Sbjct: 214 NHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 249
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 16/114 (14%)
Query: 118 LPRSIDWR---ARGAVTPVKNQGSCGCCWIFSAVAAVEGITKIRTG--RLISLSEQQVLD 172
LP S DWR V+PV+NQ SCG C+ F+++ +E +I T + LS Q+V+
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 173 CSG-SRGCYGGWMDDAFSYIIRSQ-----GLTDERVYPYQRREGYCNWQRGAMK 220
CS ++GC GG F Y+I + GL +E +PY + C + +
Sbjct: 61 CSQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFR 109
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 38/198 (19%)
Query: 163 ISLSEQQVLDCSGS---RGCYGGWMDDAFSYIIR----SQGLTDERV----YPYQRREGY 211
+ +S + +L C GS GC GG+ +A+++ R S GL + V Y E +
Sbjct: 3 VEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHH 62
Query: 212 CNWQRGAM-------KAARIRSYQDVPTSELALRYAV-------SRQPVSVAIDASSP-- 255
N R K ++I PT + Y S + + I + P
Sbjct: 63 VNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVE 122
Query: 256 -------GFRYYSGGVFAGPCGNNLN-HAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFI 307
F Y GV+ G + HA+ I+G+G N PYWL+ NSW +WG+ GF
Sbjct: 123 GAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFF 182
Query: 308 RMRRDVGGAGLCGIARKA 325
++ R G CGI +
Sbjct: 183 KILR---GQDHCGIESEV 197
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 93/226 (41%), Gaps = 42/226 (18%)
Query: 133 VKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCSGSRG---CYGGWMDDAFS 189
V++QG+C WIF++ +E I ++ +S V +C C G F
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 84
Query: 190 YIIRSQG-LTDERVYPY----------QRREGYCN-WQRG------------------AM 219
II G L E YPY + + + N W G A
Sbjct: 85 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 144
Query: 220 KAARIRSYQDVPTSELALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNL-NHAVT 278
++ R D + +++ V I A + +SG CG++ +HAV
Sbjct: 145 ESERFHDNMDAFVKIIKTE-VMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADHAVN 203
Query: 279 IVGYGS--SNEGP---YWLIKNSWGQNWGEGGFIRMRRDVGGAGLC 319
IVGYG+ ++EG YW+++NSWG WG+ G+ ++ D+ G C
Sbjct: 204 IVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV--DMYGPTHC 247
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 93/226 (41%), Gaps = 42/226 (18%)
Query: 133 VKNQGSCGCCWIFSAVAAVEGITKIRTGRLISLSEQQVLDCSGSRG---CYGGWMDDAFS 189
V++QG+C WIF++ +E I ++ +S V +C C G F
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 83
Query: 190 YIIRSQG-LTDERVYPY----------QRREGYCN-WQRG------------------AM 219
II G L E YPY + + + N W G A
Sbjct: 84 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 143
Query: 220 KAARIRSYQDVPTSELALRYAVSRQPVSVAIDASSPGFRYYSGGVFAGPCGNNL-NHAVT 278
++ R D + +++ V I A + +SG CG++ +HAV
Sbjct: 144 ESERFHDNMDAFVKIIKTE-VMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDTADHAVN 202
Query: 279 IVGYGS--SNEGP---YWLIKNSWGQNWGEGGFIRMRRDVGGAGLC 319
IVGYG+ ++EG YW+++NSWG WG+ G+ ++ D+ G C
Sbjct: 203 IVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV--DMYGPTHC 246
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 274 NHAVTIVGYGSSNEG--PYWLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKAS 326
NHAV +VGYG+ + YW++KNSWG WGE G+ R+RR + IA A+
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 64
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 245 PVSVAIDASSPGFRYYSGGVFAGPCGNNLN-HAVTIVGYGSSNEGPYWLIKNSWGQNWGE 303
PV A S F Y GV+ G + HA+ I+G+G N PYWL+ NSW +WG+
Sbjct: 169 PVEGAFSVYS-DFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVANSWNTDWGD 227
Query: 304 GGFIRMRRDVGGAGLCGI 321
GF ++ R G CGI
Sbjct: 228 NGFFKILR---GQDHCGI 242
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 118 LPRSIDWRARGAVTP----VKNQGSCGCCWIFSAVAAVEGITKIRT-GRL-ISLSEQQVL 171
LP S D R + P +++QGSCG CW F AV A+ I + GR+ + +S + +L
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 245 PVSVAIDASSPGFRYYSGGVFAGPCGNNLN-HAVTIVGYGSSNEGPYWLIKNSWGQNWGE 303
PV A S F Y GV+ G + HA+ I+G+G N PYWL+ NSW +WG+
Sbjct: 169 PVEGAFSVYS-DFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGD 227
Query: 304 GGFIRMRRDVGGAGLCGIARK 324
GF ++ R G CGI +
Sbjct: 228 NGFFKILR---GQDHCGIESE 245
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 118 LPRSIDWRARGAVTP----VKNQGSCGCCWIFSAVAAVEGITKIRT-GRL-ISLSEQQVL 171
LP S D R + P +++QGSCG CW F AV A+ I + GR+ + +S + +L
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 245 PVSVAIDASSPGFRYYSGGVFAGPCGNNLN-HAVTIVGYGSSNEGPYWLIKNSWGQNWGE 303
PV A S F Y GV+ G + HA+ I+G+G N PYWL+ NSW +WG+
Sbjct: 121 PVEGAFSVYS-DFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGD 179
Query: 304 GGFIRMRRDVGGAGLCGIARK 324
GF ++ R G CGI +
Sbjct: 180 NGFFKILR---GQDHCGIESE 197
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 290 YWLIKNSWGQNWGEGGFIRMRRDVGGAGLCGIARKASYP 328
YWL+KNSWG+ WG GG+++M +D CGIA ASYP
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 40
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 118 LPRSIDWRARGAVTP----VKNQGSCGCCWIFSAVAAVEGITKIRT 159
LP S D R + P +++QGSCG CW F AV A+ I T
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHT 46
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 118 LPRSIDWRARGAVTP----VKNQGSCGCCWIFSAVAAV 151
LP S D R + P +++QGSCG CW F AV A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 275 HAVTIVGYGSSNEGPYWLIKNSWGQNWGEGGFIRM 309
HAV VGY +E ++ I+NSWG N GE G+ M
Sbjct: 237 HAVLCVGY--DDEIRHFRIRNSWGNNVGEDGYFWM 269
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 32.0 bits (71), Expect = 0.50, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 63 EGNQTYKLSLNEFADLTDEEFIASHTGYKMP 93
+G T+K+ +N ADLT EEF A +G K+P
Sbjct: 49 KGEVTWKMGINHLADLTPEEF-AQRSGKKVP 78
>pdb|1YNP|A Chain A, Aldo-keto Reductase Akr11c1 From Bacillus Halodurans (apo
Form)
pdb|1YNP|B Chain B, Aldo-keto Reductase Akr11c1 From Bacillus Halodurans (apo
Form)
pdb|1YNQ|A Chain A, Aldo-Keto Reductase Akr11c1 From Bacillus Halodurans (Holo
Form)
pdb|1YNQ|B Chain B, Aldo-Keto Reductase Akr11c1 From Bacillus Halodurans (Holo
Form)
Length = 317
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 185 DDAFSYIIR---SQGLTDERVYPYQRREGYCNWQRGAMKAARIRSYQDVPTSELALRYAV 241
+ S ++R ++GL R P EGY N++ +K R D P ELAL+Y +
Sbjct: 208 EHGVSVVVRGPVARGLLSRR--PLPEGEGYLNYRYDELKLLRESLPTDRPLHELALQYCL 265
Query: 242 SRQPV-SVAIDASS 254
+ V +VA ASS
Sbjct: 266 AHDVVATVAAGASS 279
>pdb|1GCB|A Chain A, Gal6, Yeast Bleomycin Hydrolase Dna-Binding Protease
(Thiol)
Length = 454
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 131 TPVKNQGSCGCCWIFSA 147
TPV NQ S G CW+F+A
Sbjct: 62 TPVTNQKSSGRCWLFAA 78
>pdb|2DZY|A Chain A, Crystal Structure Of N392a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 131 TPVKNQGSCGCCWIFSA 147
TPV NQ S G CW+F+A
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|2E00|A Chain A, Crystal Structure Of N392l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 131 TPVKNQGSCGCCWIFSA 147
TPV NQ S G CW+F+A
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|2E01|A Chain A, Crystal Structure Of H369a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 131 TPVKNQGSCGCCWIFSA 147
TPV NQ S G CW+F+A
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|2DZZ|A Chain A, Crystal Structure Of N392v Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 131 TPVKNQGSCGCCWIFSA 147
TPV NQ S G CW+F+A
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|2E02|A Chain A, Crystal Structure Of H369l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 131 TPVKNQGSCGCCWIFSA 147
TPV NQ S G CW+F+A
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|2E03|A Chain A, Crystal Structure Of Nq67e Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 131 TPVKNQGSCGCCWIFSA 147
TPV N+ S G CW+F+A
Sbjct: 66 TPVTNEKSSGRCWLFAA 82
>pdb|2QVJ|A Chain A, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid Protein Ser290trp Mutant
pdb|2QVJ|B Chain B, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid Protein Ser290trp Mutant
pdb|2QVJ|C Chain C, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid Protein Ser290trp Mutant
pdb|2QVJ|D Chain D, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid Protein Ser290trp Mutant
pdb|2QVJ|E Chain E, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid Protein Ser290trp Mutant
pdb|3HHW|K Chain K, Complex Of A Vesicular Stomatitis Virus Empty Capsid With
The Nucleocapsid-Binding Domain Of The Phosphoprotein
pdb|3HHW|L Chain L, Complex Of A Vesicular Stomatitis Virus Empty Capsid With
The Nucleocapsid-Binding Domain Of The Phosphoprotein
pdb|3HHW|M Chain M, Complex Of A Vesicular Stomatitis Virus Empty Capsid With
The Nucleocapsid-Binding Domain Of The Phosphoprotein
pdb|3HHW|N Chain N, Complex Of A Vesicular Stomatitis Virus Empty Capsid With
The Nucleocapsid-Binding Domain Of The Phosphoprotein
pdb|3HHW|O Chain O, Complex Of A Vesicular Stomatitis Virus Empty Capsid With
The Nucleocapsid-Binding Domain Of The Phosphoprotein
Length = 421
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 279 IVGYGSSNEGPYWLIKNSWGQNWGEGGFIRMR 310
++ +G S++ PYW +KN WG+ + +R
Sbjct: 277 LIDFGLSSKSPYWSVKNPAFHFWGQLTALLLR 308
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 130 VTPVKNQGSCGCCWIFSAVAAVE 152
+T VKNQ G CW +S+ + +E
Sbjct: 22 ITSVKNQNRAGTCWCYSSYSFLE 44
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 273 LNHAVTI--VGYGSSNEGPY--WLIKNSWGQNWGEGGFIRM 309
+ HA+T V +G + W ++NSWG++ G G++ M
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCM 409
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 273 LNHAVTI--VGYGSSNEGPY--WLIKNSWGQNWGEGGFIRM 309
+ HA+T V +G + W ++NSWG++ G G++ M
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCM 409
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 28.1 bits (61), Expect = 7.8, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 29 WMAQSARTYKNQAEKAMXXXXXXXXXXXXXXXXXEGNQTYKLSLNEFADLTDEEFIASHT 88
+ A A++Y + EK +G +Y L +N F DL+ +EF +
Sbjct: 28 FQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQG-YSYSLKMNHFGDLSRDEFRRKYL 86
Query: 89 GYKMPTRNISNQ 100
G+K +RN+ +
Sbjct: 87 GFK-KSRNLKSH 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,641,319
Number of Sequences: 62578
Number of extensions: 382326
Number of successful extensions: 1219
Number of sequences better than 100.0: 132
Number of HSP's better than 100.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 795
Number of HSP's gapped (non-prelim): 152
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)