BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037525
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 18/165 (10%)
Query: 2 IILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAH---DN 58
+++VG ++SA D+ R L VAK H + +S+ G N L + E
Sbjct: 217 VLVVGGASSANDLVRHLTPVAK--HPIYQSLLGGG-----DIQNESLQQVPEITKFDPTT 269
Query: 59 GAVVFRNGHTV-HADVILHCTGYKYHFPF-----LETNGIVTMDD-NRVGPLYKHVFPPV 111
+ + G + + D +++CTGY Y PF L++ +DD + V +Y+H+F +
Sbjct: 270 REIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFY-I 328
Query: 112 LAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMME 156
P L+FVGL V+PFP + Q+ ++A V SG++ LPS+EE ++
Sbjct: 329 PDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLK 373
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 18/165 (10%)
Query: 2 IILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAH---DN 58
+++VG ++SA D+ R L VAK H + +S+ G N L + E
Sbjct: 215 VLVVGGASSANDLVRHLTPVAK--HPIYQSLLGGG-----DIQNESLQQVPEITKFDPTT 267
Query: 59 GAVVFRNGHTV-HADVILHCTGYKYHFPF-----LETNGIVTMDD-NRVGPLYKHVFPPV 111
+ + G + + D +++CTGY Y PF L++ +DD + V +Y+H+F +
Sbjct: 268 REIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFY-I 326
Query: 112 LAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMME 156
P L+FVGL V+PFP + Q+ ++A V SG++ LPS+EE ++
Sbjct: 327 PDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLK 371
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 10/184 (5%)
Query: 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
++LVGSS+SA DI + + A Y+ +D +++ +N
Sbjct: 199 TVLLVGSSSSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDER--PNLVRVDTENA- 255
Query: 61 VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVL---APWLS 117
F +G + D I+ CTGY +HFPFL + + + +NR+ PL +++ V+ P
Sbjct: 256 -YFADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFF 311
Query: 118 FVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHN 177
++G+ + F + + Q+ + V+ G++ LPS+EEM D+ A+ T +
Sbjct: 312 YIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTY 371
Query: 178 MGDY 181
GDY
Sbjct: 372 QGDY 375
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 10/184 (5%)
Query: 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
++LVGSS SA DI + + A Y+ +D +++ +N
Sbjct: 199 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDER--PNLVRVDTENA- 255
Query: 61 VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVL---APWLS 117
F +G + D I+ CTGY +HFPFL + + + +NR+ PL +++ V+ P
Sbjct: 256 -YFADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFF 311
Query: 118 FVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHN 177
++G+ + F + + Q+ + V+ G++ LPS+EEM D+ A+ T +
Sbjct: 312 YIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTY 371
Query: 178 MGDY 181
GDY
Sbjct: 372 QGDY 375
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 10/184 (5%)
Query: 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
++LVGSS SA DI + + A Y+ +D +++ +N
Sbjct: 204 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDER--PNLVRVDTENA- 260
Query: 61 VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVL---APWLS 117
F +G + D I+ CTGY +HFPFL + + + +NR+ PL +++ V+ P
Sbjct: 261 -YFADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFF 316
Query: 118 FVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHN 177
++G+ + F + + Q+ + V+ G++ LPS+EEM D+ A+ T +
Sbjct: 317 YIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTY 376
Query: 178 MGDY 181
GDY
Sbjct: 377 QGDY 380
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 10/184 (5%)
Query: 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
++LVGSS SA DI + + A Y+ +D +++ +N
Sbjct: 204 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDER--PNLVRVDTENA- 260
Query: 61 VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVL---APWLS 117
F +G + D I+ CTGY +HFPFL + + + +NR+ PL +++ V+ P
Sbjct: 261 -YFADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFF 316
Query: 118 FVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHN 177
++G+ + F + + Q+ + V+ G++ LPS+EEM D+ A+ T +
Sbjct: 317 YIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTY 376
Query: 178 MGDY 181
GDY
Sbjct: 377 QGDY 380
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 10/184 (5%)
Query: 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
++LVGSS SA DI + + A Y+ +D +++ +N
Sbjct: 204 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDER--PNLVRVDTENA- 260
Query: 61 VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVL---APWLS 117
F +G + D I+ CTGY +HFPFL + + + +NR+ PL +++ V+ P
Sbjct: 261 -YFADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFF 316
Query: 118 FVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHN 177
++G+ + F + + Q+ + V+ G++ LPS+EEM D+ A+ T +
Sbjct: 317 YIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTY 376
Query: 178 MGDY 181
GDY
Sbjct: 377 QGDY 380
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 10/184 (5%)
Query: 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
++LVGSS SA DI + + A Y+ +D +++ +N
Sbjct: 204 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDER--PNLVRVDTENA- 260
Query: 61 VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVL---APWLS 117
F +G + D I+ CTGY +HFPFL + + + +NR+ PL +++ V+ P
Sbjct: 261 -YFADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFF 316
Query: 118 FVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHN 177
++G+ + F + + Q+ + V+ G++ LPS+EEM D+ A+ T +
Sbjct: 317 YIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTY 376
Query: 178 MGDY 181
GDY
Sbjct: 377 QGDY 380
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 10/184 (5%)
Query: 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
++LVGSS SA DI + + A Y+ +D +++ +N
Sbjct: 199 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPXGYKWPENWDER--PNLVRVDTENA- 255
Query: 61 VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVL---APWLS 117
F +G + D I+ CTGY +HFPFL + + + +NR+ PL +++ V+ P
Sbjct: 256 -YFADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFF 311
Query: 118 FVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHN 177
++G + F + Q+ + V+ G++ LPS+EE D+ A+ T +
Sbjct: 312 YIGXQDQWYSFNXFDAQAWYARDVIXGRLPLPSKEEXKADSXAWREKELTLVTAEEXYTY 371
Query: 178 MGDY 181
GDY
Sbjct: 372 QGDY 375
>pdb|3T2G|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, Y229f Variant With Dhap
Length = 407
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 21/98 (21%)
Query: 77 CTGYKYHFPFLETNGIVTMDD-----------------NRVGPLYKHVFPPVLAPWLSFV 119
G++ H +LE G+ DD R+GP H PP + +
Sbjct: 304 ALGFQLHEGYLE-GGVDLFDDPAFDYVRQTAAQIADYIRRMGPFQPHRLPPEEMEYTALP 362
Query: 120 GLPWKVIPFPLCEYQ---SKWIAGVLSGQIVLPSQEEM 154
+ KV P+P +Y+ K+I V+ G V SQ ++
Sbjct: 363 KILAKVKPYPADQYEKDRKKYIEAVVKGAKVEESQHDL 400
>pdb|3T2B|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, Ligand Free
pdb|3T2C|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, Dhap-Bound Form
pdb|3T2D|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, Fbp-Bound Form
pdb|3T2E|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, F6p-Bound Form
pdb|3T2F|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, Soaked With Edta And Dhap
Length = 407
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 98 NRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQ---SKWIAGVLSGQIVLPSQEEM 154
R+GP H PP + + + KV P+P +Y+ K+I V+ G V SQ ++
Sbjct: 341 RRMGPFQPHRLPPEEMEYTALPKILAKVKPYPADQYEKDRKKYIEAVVKGAKVEESQHDL 400
>pdb|3K10|A Chain A, Crystal Structure Of Telomere Capping Protein Stn1 From
Saccharomyces Cerevisiae
Length = 179
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 12 VDICRDLAGVAKEV--HLVSRSVADGTY----EKQPGFDNMWLHSMIESAHDNGAVVFRN 65
V + + + KE LV+R V+ G + FD + L ++ E A +V+ +
Sbjct: 47 VGVMKSFDSLEKEAFRDLVNRLVSQGLIGLKDKTSETFDLLPLKNLFEYAEKRISVLMK- 105
Query: 66 GHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPW 115
V L K H P++ TNGIV + + K +P VL W
Sbjct: 106 LQCYTGTVQLSHVQEKLHLPYITTNGIVDVFKECLKRTKKQ-YPEVLKNW 154
>pdb|3KEY|A Chain A, Crystal Structure Of S. Cerevisiae Stn1 C-Terminal
Length = 185
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 12 VDICRDLAGVAKEV--HLVSRSVADGTY----EKQPGFDNMWLHSMIESAHDNGAVVFRN 65
V + + + KE LV+R V+ G + FD + L ++ E A +V+ +
Sbjct: 50 VGVMKSFDSLEKEAFRDLVNRLVSQGLIGLKDKTSETFDLLPLKNLFEYAEKRISVLMK- 108
Query: 66 GHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPW 115
V L K H P++ TNGIV + + K +P VL W
Sbjct: 109 LQCYTGTVQLSHVQEKLHLPYITTNGIVDVFKECLKRTKKQ-YPEVLKNW 157
>pdb|1WCG|A Chain A, Aphid Myrosinase
pdb|1WCG|B Chain B, Aphid Myrosinase
Length = 464
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 102 PLYKHVFPPVLAPWLSFV----GLPWKVIP 127
P+YK +PP++ W+ GLPW +P
Sbjct: 258 PVYKGDYPPIMKKWVDQKSKEEGLPWSKLP 287
>pdb|3LLV|A Chain A, The Crystal Structure Of The Nad(P)-Binding Domain Of An
Exopolyphosphatase-Related Protein From Archaeoglobus
Fulgidus To 1.7a
Length = 141
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 3 ILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFD 44
I++GS A+ V + R+L K+V V +S + GFD
Sbjct: 10 IVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFD 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,045,079
Number of Sequences: 62578
Number of extensions: 253890
Number of successful extensions: 602
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 15
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)