Query 037525
Match_columns 182
No_of_seqs 238 out of 1697
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 13:08:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02172 flavin-containing mon 100.0 2.5E-38 5.5E-43 270.7 18.3 182 1-182 206-388 (461)
2 PF00743 FMO-like: Flavin-bind 100.0 1.2E-32 2.5E-37 239.0 13.7 166 1-169 185-419 (531)
3 KOG1399 Flavin-containing mono 99.9 8.1E-25 1.7E-29 185.8 11.3 178 1-179 188-367 (448)
4 COG1252 Ndh NADH dehydrogenase 99.6 7E-15 1.5E-19 123.4 10.3 141 1-145 157-330 (405)
5 PTZ00318 NADH dehydrogenase-li 99.5 4.9E-13 1.1E-17 113.9 13.7 139 1-144 175-345 (424)
6 PRK13512 coenzyme A disulfide 99.5 8.8E-13 1.9E-17 112.7 12.7 140 1-145 150-312 (438)
7 PRK07846 mycothione reductase; 99.4 2.7E-12 6E-17 110.1 14.9 142 1-145 168-325 (451)
8 TIGR01421 gluta_reduc_1 glutat 99.4 3.6E-12 7.9E-17 109.4 14.2 142 1-144 168-327 (450)
9 PRK04965 NADH:flavorubredoxin 99.4 1.5E-12 3.3E-17 109.1 11.0 140 1-146 143-303 (377)
10 PLN02507 glutathione reductase 99.4 7.3E-12 1.6E-16 108.8 15.4 142 1-145 205-363 (499)
11 TIGR03385 CoA_CoA_reduc CoA-di 99.4 1.6E-12 3.5E-17 110.6 10.0 141 1-145 139-304 (427)
12 TIGR01292 TRX_reduct thioredox 99.4 3.3E-12 7.1E-17 102.9 10.4 138 1-143 143-297 (300)
13 TIGR03452 mycothione_red mycot 99.4 1.5E-11 3.3E-16 105.5 14.9 143 1-145 171-328 (452)
14 PRK06116 glutathione reductase 99.4 1.7E-11 3.6E-16 105.1 14.6 143 1-145 169-328 (450)
15 COG0492 TrxB Thioredoxin reduc 99.3 9.9E-12 2.1E-16 101.6 11.3 120 1-124 145-276 (305)
16 TIGR01423 trypano_reduc trypan 99.3 2.9E-11 6.3E-16 104.7 14.8 142 1-145 189-351 (486)
17 TIGR02374 nitri_red_nirB nitri 99.3 7E-12 1.5E-16 114.1 11.4 141 1-146 142-302 (785)
18 PRK06416 dihydrolipoamide dehy 99.3 2.9E-11 6.4E-16 103.9 14.6 143 1-146 174-335 (462)
19 PTZ00052 thioredoxin reductase 99.3 2.1E-11 4.5E-16 106.0 13.6 142 1-145 184-341 (499)
20 PRK07845 flavoprotein disulfid 99.3 3.8E-11 8.3E-16 103.5 14.9 142 1-145 179-337 (466)
21 TIGR01424 gluta_reduc_2 glutat 99.3 5.6E-11 1.2E-15 101.9 15.6 142 1-145 168-326 (446)
22 PRK09754 phenylpropionate diox 99.3 7.5E-12 1.6E-16 105.7 9.8 141 1-146 146-310 (396)
23 PRK05249 soluble pyridine nucl 99.3 4.7E-11 1E-15 102.6 14.7 142 1-145 177-335 (461)
24 PRK07818 dihydrolipoamide dehy 99.3 6E-11 1.3E-15 102.2 15.0 143 1-146 174-337 (466)
25 TIGR01438 TGR thioredoxin and 99.3 6.8E-11 1.5E-15 102.4 14.2 141 1-145 182-344 (484)
26 PRK10262 thioredoxin reductase 99.3 7.6E-11 1.6E-15 96.7 13.2 139 1-144 148-316 (321)
27 PRK11749 dihydropyrimidine deh 99.3 3.9E-11 8.4E-16 103.1 11.3 140 1-142 275-447 (457)
28 COG1249 Lpd Pyruvate/2-oxoglut 99.3 1.3E-10 2.9E-15 99.5 14.1 141 1-144 175-334 (454)
29 PRK06115 dihydrolipoamide dehy 99.3 1.9E-10 4.1E-15 99.2 15.0 142 1-146 176-339 (466)
30 PRK06370 mercuric reductase; V 99.3 1.9E-10 4.2E-15 99.0 14.7 143 1-145 173-334 (463)
31 PRK09564 coenzyme A disulfide 99.3 3.6E-11 7.7E-16 102.7 10.1 142 1-146 151-318 (444)
32 PRK14989 nitrite reductase sub 99.2 5E-11 1.1E-15 109.1 11.3 142 1-146 147-311 (847)
33 TIGR02053 MerA mercuric reduct 99.2 2.3E-10 4.9E-15 98.5 14.6 142 1-145 168-329 (463)
34 PRK06292 dihydrolipoamide dehy 99.2 1.7E-10 3.6E-15 99.1 13.7 143 1-145 171-331 (460)
35 PLN02546 glutathione reductase 99.2 2.1E-10 4.5E-15 100.9 14.3 140 1-145 254-413 (558)
36 PRK12831 putative oxidoreducta 99.2 8.2E-11 1.8E-15 101.4 11.5 140 1-142 283-456 (464)
37 PTZ00153 lipoamide dehydrogena 99.2 2.6E-10 5.7E-15 101.8 14.5 145 1-145 314-495 (659)
38 PRK06327 dihydrolipoamide dehy 99.2 2.8E-10 6.1E-15 98.3 14.2 144 1-146 185-348 (475)
39 PRK13748 putative mercuric red 99.2 2E-10 4.2E-15 101.0 13.3 141 1-145 272-428 (561)
40 PRK06467 dihydrolipoamide dehy 99.2 2.8E-10 6E-15 98.3 13.9 141 1-145 176-337 (471)
41 TIGR01316 gltA glutamate synth 99.2 1.3E-10 2.9E-15 99.7 11.5 138 1-143 274-446 (449)
42 PTZ00058 glutathione reductase 99.2 5E-10 1.1E-14 98.5 15.1 141 1-145 239-432 (561)
43 TIGR03169 Nterm_to_SelD pyridi 99.2 1.5E-10 3.2E-15 96.5 11.1 137 1-143 147-307 (364)
44 TIGR01350 lipoamide_DH dihydro 99.2 5.2E-10 1.1E-14 96.0 14.5 142 1-146 172-333 (461)
45 PRK09853 putative selenate red 99.2 2.1E-10 4.6E-15 105.7 12.5 143 1-147 670-842 (1019)
46 PRK05976 dihydrolipoamide dehy 99.2 6.3E-10 1.4E-14 96.0 14.7 143 1-146 182-344 (472)
47 PRK14727 putative mercuric red 99.2 5.4E-10 1.2E-14 96.7 13.3 141 1-145 190-346 (479)
48 PRK06912 acoL dihydrolipoamide 99.2 9.3E-10 2E-14 94.7 14.7 142 1-145 172-330 (458)
49 PRK08010 pyridine nucleotide-d 99.2 9.9E-10 2.2E-14 94.0 14.7 142 1-145 160-317 (441)
50 PRK14694 putative mercuric red 99.2 6.5E-10 1.4E-14 95.9 13.3 142 1-145 180-335 (468)
51 PRK07251 pyridine nucleotide-d 99.2 1.5E-09 3.2E-14 92.8 15.3 142 1-145 159-316 (438)
52 KOG2495 NADH-dehydrogenase (ub 99.1 8.3E-11 1.8E-15 98.2 6.3 138 1-144 220-394 (491)
53 TIGR03140 AhpF alkyl hydropero 99.1 2.7E-10 5.8E-15 99.4 9.4 118 1-124 354-488 (515)
54 PRK15317 alkyl hydroperoxide r 99.1 8.3E-10 1.8E-14 96.4 12.0 138 1-143 353-512 (517)
55 PRK12770 putative glutamate sy 99.1 1.1E-09 2.3E-14 91.2 11.5 140 1-143 174-346 (352)
56 PRK12814 putative NADPH-depend 99.1 2E-09 4.3E-14 96.4 13.3 143 1-146 325-504 (652)
57 TIGR03315 Se_ygfK putative sel 99.1 9.8E-10 2.1E-14 101.6 11.4 146 1-148 668-841 (1012)
58 PRK12778 putative bifunctional 99.1 1.3E-09 2.7E-14 99.2 11.1 140 1-143 572-746 (752)
59 PRK12779 putative bifunctional 99.0 2.2E-09 4.7E-14 99.5 10.3 147 1-149 449-629 (944)
60 KOG0404 Thioredoxin reductase 99.0 8E-10 1.7E-14 85.7 6.2 119 2-123 160-293 (322)
61 TIGR03143 AhpF_homolog putativ 99.0 7.7E-09 1.7E-13 91.1 12.3 136 1-141 145-303 (555)
62 PRK12810 gltD glutamate syntha 99.0 7.4E-09 1.6E-13 89.5 11.5 147 1-149 283-471 (471)
63 PRK12775 putative trifunctiona 98.9 1E-08 2.2E-13 95.7 11.8 150 1-152 573-764 (1006)
64 COG2072 TrkA Predicted flavopr 98.9 9.1E-09 2E-13 88.3 10.5 34 1-34 177-210 (443)
65 PRK12769 putative oxidoreducta 98.9 3.8E-08 8.2E-13 88.3 14.0 140 1-143 470-648 (654)
66 TIGR01318 gltD_gamma_fam gluta 98.9 4.9E-08 1.1E-12 84.3 13.7 141 1-143 284-462 (467)
67 TIGR01317 GOGAT_sm_gam glutama 98.9 8.2E-08 1.8E-12 83.3 14.6 146 1-149 285-485 (485)
68 PRK12771 putative glutamate sy 98.9 2.1E-08 4.6E-13 88.4 11.1 143 1-145 269-446 (564)
69 PRK13984 putative oxidoreducta 98.8 2.6E-08 5.7E-13 88.5 11.1 140 1-143 420-598 (604)
70 COG3634 AhpF Alkyl hydroperoxi 98.8 2.8E-08 6E-13 81.6 8.3 118 1-123 356-489 (520)
71 PRK12809 putative oxidoreducta 98.7 2E-07 4.3E-12 83.5 11.5 141 1-143 453-631 (639)
72 KOG0405 Pyridine nucleotide-di 98.7 1.4E-07 3E-12 77.5 9.2 140 1-144 191-349 (478)
73 COG1251 NirB NAD(P)H-nitrite r 98.7 4.2E-08 9.1E-13 87.0 6.0 138 3-146 149-307 (793)
74 KOG1336 Monodehydroascorbate/f 98.6 1.4E-07 3.1E-12 80.0 8.6 118 1-123 215-350 (478)
75 PF00070 Pyr_redox: Pyridine n 98.6 1.2E-07 2.6E-12 62.3 6.5 66 1-66 1-80 (80)
76 TIGR01292 TRX_reduct thioredox 98.5 1.4E-06 3.1E-11 70.0 10.5 87 1-88 2-118 (300)
77 PF13434 K_oxygenase: L-lysine 98.5 2.5E-07 5.3E-12 77.0 5.8 34 1-34 192-227 (341)
78 TIGR01372 soxA sarcosine oxida 98.5 4.4E-07 9.6E-12 84.9 8.0 138 1-143 319-468 (985)
79 TIGR03169 Nterm_to_SelD pyridi 98.3 5.3E-06 1.1E-10 69.1 8.8 89 1-89 1-114 (364)
80 COG0446 HcaD Uncharacterized N 98.2 7.9E-06 1.7E-10 68.3 9.2 143 1-145 138-310 (415)
81 PTZ00318 NADH dehydrogenase-li 98.2 1E-05 2.2E-10 69.1 9.6 88 1-88 12-131 (424)
82 PRK09754 phenylpropionate diox 98.2 1.2E-05 2.6E-10 68.0 9.6 83 1-83 5-113 (396)
83 COG3486 IucD Lysine/ornithine 98.2 5.6E-05 1.2E-09 63.5 12.5 149 2-151 190-419 (436)
84 PRK09564 coenzyme A disulfide 98.1 1.7E-05 3.6E-10 67.9 9.6 88 1-88 2-121 (444)
85 PLN02852 ferredoxin-NADP+ redu 98.1 7.2E-05 1.6E-09 65.1 12.0 33 1-33 168-221 (491)
86 PRK04965 NADH:flavorubredoxin 98.1 3.2E-05 6.9E-10 64.9 9.6 87 1-88 4-117 (377)
87 COG1252 Ndh NADH dehydrogenase 98.1 2.8E-05 6.1E-10 65.8 9.1 88 1-88 5-117 (405)
88 PRK13512 coenzyme A disulfide 98.0 3E-05 6.6E-10 66.5 9.2 87 1-87 3-122 (438)
89 PRK07251 pyridine nucleotide-d 97.9 0.0001 2.2E-09 63.1 10.4 32 1-32 5-36 (438)
90 TIGR03140 AhpF alkyl hydropero 97.9 0.0001 2.2E-09 64.6 10.4 87 1-87 214-328 (515)
91 PRK15317 alkyl hydroperoxide r 97.9 9.4E-05 2E-09 64.8 9.9 85 1-85 213-325 (517)
92 TIGR02374 nitri_red_nirB nitri 97.9 8.6E-05 1.9E-09 68.2 9.5 87 2-88 1-114 (785)
93 PRK06116 glutathione reductase 97.8 0.00014 3.1E-09 62.5 9.8 31 1-31 6-36 (450)
94 PF01134 GIDA: Glucose inhibit 97.8 0.0001 2.2E-09 62.3 8.2 29 1-29 1-29 (392)
95 PRK14989 nitrite reductase sub 97.8 0.00016 3.4E-09 67.0 9.9 88 1-88 5-119 (847)
96 TIGR01789 lycopene_cycl lycope 97.8 0.00022 4.8E-09 60.0 9.9 81 1-82 1-138 (370)
97 COG2072 TrkA Predicted flavopr 97.8 0.00063 1.4E-08 58.6 12.6 32 1-32 10-42 (443)
98 PRK08010 pyridine nucleotide-d 97.7 0.00016 3.4E-09 62.0 8.7 32 1-32 5-36 (441)
99 TIGR01421 gluta_reduc_1 glutat 97.7 0.00026 5.6E-09 61.0 10.0 31 1-31 4-34 (450)
100 TIGR01424 gluta_reduc_2 glutat 97.7 0.00025 5.4E-09 61.0 9.9 31 1-31 4-34 (446)
101 PRK10262 thioredoxin reductase 97.7 0.0003 6.4E-09 57.7 9.8 30 1-30 8-37 (321)
102 COG2081 Predicted flavoprotein 97.7 0.0002 4.3E-09 60.2 7.8 33 1-33 5-37 (408)
103 KOG1335 Dihydrolipoamide dehyd 97.7 0.00036 7.9E-09 58.5 9.1 142 1-145 213-377 (506)
104 PF13738 Pyr_redox_3: Pyridine 97.7 0.00026 5.7E-09 53.8 7.8 31 3-33 1-32 (203)
105 PRK14694 putative mercuric red 97.6 0.00065 1.4E-08 58.8 10.5 32 1-32 8-39 (468)
106 PRK06370 mercuric reductase; V 97.6 0.0003 6.6E-09 60.7 8.4 31 1-31 7-37 (463)
107 COG0492 TrxB Thioredoxin reduc 97.6 0.00063 1.4E-08 55.8 9.4 87 1-88 5-121 (305)
108 PTZ00058 glutathione reductase 97.6 0.00098 2.1E-08 59.1 11.1 31 1-31 50-80 (561)
109 PRK05249 soluble pyridine nucl 97.5 0.00074 1.6E-08 58.1 9.9 32 1-32 7-38 (461)
110 PRK12779 putative bifunctional 97.5 0.00026 5.7E-09 66.2 7.6 77 1-81 308-403 (944)
111 PLN02463 lycopene beta cyclase 97.5 0.00047 1E-08 59.5 8.6 32 1-32 30-61 (447)
112 PLN02172 flavin-containing mon 97.5 0.00095 2.1E-08 57.8 10.5 32 1-32 12-43 (461)
113 KOG3851 Sulfide:quinone oxidor 97.5 0.00012 2.7E-09 59.9 4.7 88 1-89 41-152 (446)
114 PRK06753 hypothetical protein; 97.5 0.00069 1.5E-08 56.4 9.3 33 1-33 2-34 (373)
115 PRK06847 hypothetical protein; 97.5 0.00063 1.4E-08 56.7 8.9 33 1-33 6-38 (375)
116 PRK06467 dihydrolipoamide dehy 97.5 0.00076 1.6E-08 58.5 9.4 32 1-32 6-37 (471)
117 PRK07236 hypothetical protein; 97.5 0.001 2.2E-08 55.9 9.5 32 1-32 8-39 (386)
118 KOG1346 Programmed cell death 97.5 0.00028 6E-09 59.8 5.9 94 1-96 349-462 (659)
119 PF05834 Lycopene_cycl: Lycope 97.4 0.001 2.2E-08 56.0 9.3 33 1-33 1-35 (374)
120 PRK09853 putative selenate red 97.4 0.00048 1E-08 64.5 7.7 33 1-33 541-573 (1019)
121 TIGR02053 MerA mercuric reduct 97.4 0.0011 2.4E-08 57.1 9.5 31 1-31 2-32 (463)
122 PLN02852 ferredoxin-NADP+ redu 97.4 0.00019 4E-09 62.6 4.5 33 1-33 28-62 (491)
123 TIGR03143 AhpF_homolog putativ 97.4 0.0016 3.4E-08 57.7 10.3 87 1-88 6-120 (555)
124 PLN02546 glutathione reductase 97.4 0.0013 2.8E-08 58.3 9.4 30 1-30 81-110 (558)
125 PF03486 HI0933_like: HI0933-l 97.4 0.00071 1.5E-08 57.7 7.4 33 1-33 2-34 (409)
126 PRK07588 hypothetical protein; 97.3 0.0015 3.3E-08 54.9 9.1 33 1-33 2-34 (391)
127 PRK05868 hypothetical protein; 97.3 0.0021 4.5E-08 54.0 9.4 33 1-33 3-35 (372)
128 PRK06115 dihydrolipoamide dehy 97.3 0.0019 4.2E-08 55.8 9.4 31 1-31 5-35 (466)
129 TIGR01350 lipoamide_DH dihydro 97.3 0.0026 5.7E-08 54.7 10.1 30 1-30 3-32 (461)
130 PF00743 FMO-like: Flavin-bind 97.3 0.00093 2E-08 58.9 7.4 33 1-33 3-35 (531)
131 PLN02507 glutathione reductase 97.3 0.002 4.3E-08 56.3 9.3 30 1-30 27-56 (499)
132 PRK05976 dihydrolipoamide dehy 97.2 0.0035 7.7E-08 54.2 10.6 31 1-31 6-36 (472)
133 TIGR03219 salicylate_mono sali 97.2 0.0026 5.7E-08 53.9 9.2 33 1-33 2-35 (414)
134 PRK06416 dihydrolipoamide dehy 97.2 0.0027 5.8E-08 54.7 9.2 32 1-32 6-37 (462)
135 KOG4716 Thioredoxin reductase 97.2 0.0017 3.7E-08 53.8 7.3 141 1-144 200-364 (503)
136 PRK11749 dihydropyrimidine deh 97.1 0.00084 1.8E-08 57.9 5.6 33 1-33 142-174 (457)
137 PRK06912 acoL dihydrolipoamide 97.1 0.0068 1.5E-07 52.3 10.7 32 1-32 2-33 (458)
138 PTZ00052 thioredoxin reductase 97.1 0.0064 1.4E-07 53.2 10.6 30 1-30 7-36 (499)
139 PRK07845 flavoprotein disulfid 97.1 0.0014 3.1E-08 56.7 6.4 32 1-32 3-34 (466)
140 PRK13748 putative mercuric red 97.1 0.0068 1.5E-07 53.5 10.8 31 1-31 100-130 (561)
141 TIGR01438 TGR thioredoxin and 97.1 0.0067 1.5E-07 52.9 10.6 30 1-30 4-33 (484)
142 PRK12778 putative bifunctional 97.1 0.00099 2.1E-08 61.0 5.5 32 1-32 433-464 (752)
143 COG1249 Lpd Pyruvate/2-oxoglut 97.1 0.01 2.2E-07 51.4 11.3 32 1-32 6-37 (454)
144 PRK07818 dihydrolipoamide dehy 97.0 0.0061 1.3E-07 52.7 10.0 31 1-31 6-36 (466)
145 PRK06292 dihydrolipoamide dehy 97.0 0.0031 6.7E-08 54.3 8.1 31 1-31 5-35 (460)
146 KOG1399 Flavin-containing mono 97.0 0.0089 1.9E-07 51.6 10.7 33 1-33 8-40 (448)
147 TIGR03315 Se_ygfK putative sel 97.0 0.0015 3.2E-08 61.4 6.3 33 1-33 539-571 (1012)
148 TIGR01423 trypano_reduc trypan 97.0 0.0064 1.4E-07 53.0 10.0 30 1-30 5-35 (486)
149 PRK14727 putative mercuric red 97.0 0.01 2.3E-07 51.5 11.3 31 1-31 18-48 (479)
150 PRK07846 mycothione reductase; 96.9 0.0094 2E-07 51.4 10.3 31 58-88 116-146 (451)
151 PRK06567 putative bifunctional 96.9 0.0039 8.4E-08 58.3 7.7 20 68-87 714-733 (1028)
152 PRK12775 putative trifunctiona 96.9 0.0022 4.9E-08 60.5 6.1 33 1-33 432-464 (1006)
153 TIGR01372 soxA sarcosine oxida 96.8 0.012 2.6E-07 55.6 10.8 32 1-32 165-196 (985)
154 PLN02697 lycopene epsilon cycl 96.8 0.0083 1.8E-07 52.9 9.2 33 1-33 110-142 (529)
155 PRK06567 putative bifunctional 96.8 0.0028 6E-08 59.2 6.3 31 1-31 385-415 (1028)
156 PRK01438 murD UDP-N-acetylmura 96.8 0.00067 1.4E-08 58.8 1.7 74 1-87 18-95 (480)
157 PRK06327 dihydrolipoamide dehy 96.7 0.011 2.4E-07 51.3 8.6 30 1-30 6-35 (475)
158 PF13450 NAD_binding_8: NAD(P) 96.6 0.0031 6.7E-08 40.0 3.8 30 4-33 1-30 (68)
159 KOG1336 Monodehydroascorbate/f 96.5 0.024 5.1E-07 48.8 9.3 84 1-84 76-183 (478)
160 TIGR03452 mycothione_red mycot 96.5 0.024 5.2E-07 48.9 9.7 29 1-31 4-32 (452)
161 COG0445 GidA Flavin-dependent 96.4 0.0077 1.7E-07 52.8 6.0 32 1-32 6-37 (621)
162 TIGR00137 gid_trmFO tRNA:m(5)U 96.4 0.0039 8.5E-08 53.5 4.0 33 1-33 2-34 (433)
163 COG1635 THI4 Ribulose 1,5-bisp 96.4 0.0051 1.1E-07 48.1 4.2 33 1-33 32-64 (262)
164 KOG2755 Oxidoreductase [Genera 96.4 0.002 4.3E-08 51.6 1.9 82 1-84 1-106 (334)
165 PRK05335 tRNA (uracil-5-)-meth 96.4 0.0042 9.1E-08 53.2 4.0 32 1-32 4-35 (436)
166 PF01494 FAD_binding_3: FAD bi 96.3 0.0043 9.3E-08 50.6 3.9 34 1-34 3-36 (356)
167 PF07992 Pyr_redox_2: Pyridine 96.3 0.0043 9.2E-08 46.8 3.5 32 1-32 1-32 (201)
168 TIGR02032 GG-red-SF geranylger 96.2 0.0065 1.4E-07 48.4 4.2 33 1-33 2-34 (295)
169 KOG2311 NAD/FAD-utilizing prot 96.2 0.033 7.1E-07 48.3 8.3 31 1-31 30-60 (679)
170 PTZ00153 lipoamide dehydrogena 96.1 0.061 1.3E-06 48.7 10.5 31 1-31 118-148 (659)
171 COG1148 HdrA Heterodisulfide r 96.0 0.0081 1.7E-07 52.0 4.1 33 1-33 126-158 (622)
172 PF01946 Thi4: Thi4 family; PD 96.0 0.0074 1.6E-07 47.1 3.4 33 1-33 19-51 (230)
173 PRK11259 solA N-methyltryptoph 95.9 0.01 2.2E-07 49.4 4.2 32 1-32 5-36 (376)
174 PRK07233 hypothetical protein; 95.9 0.01 2.2E-07 50.2 4.3 33 1-33 1-33 (434)
175 PRK07364 2-octaprenyl-6-methox 95.9 0.011 2.4E-07 50.0 4.4 33 1-33 20-52 (415)
176 PRK04176 ribulose-1,5-biphosph 95.9 0.012 2.6E-07 47.0 4.3 33 1-33 27-59 (257)
177 PRK08773 2-octaprenyl-3-methyl 95.8 0.012 2.6E-07 49.5 4.3 32 1-32 8-39 (392)
178 TIGR00292 thiazole biosynthesi 95.8 0.013 2.8E-07 46.9 4.2 33 1-33 23-55 (254)
179 TIGR02028 ChlP geranylgeranyl 95.8 0.011 2.4E-07 50.1 4.0 33 1-33 2-34 (398)
180 PRK09126 hypothetical protein; 95.8 0.012 2.6E-07 49.4 4.0 32 1-32 5-36 (392)
181 PF01266 DAO: FAD dependent ox 95.7 0.011 2.3E-07 48.2 3.6 32 1-32 1-32 (358)
182 TIGR01988 Ubi-OHases Ubiquinon 95.7 0.013 2.9E-07 48.7 4.2 32 1-32 1-32 (385)
183 PRK12409 D-amino acid dehydrog 95.7 0.012 2.5E-07 49.8 3.9 32 1-32 3-34 (410)
184 TIGR01377 soxA_mon sarcosine o 95.7 0.014 3E-07 48.6 4.2 32 1-32 2-33 (380)
185 TIGR01984 UbiH 2-polyprenyl-6- 95.7 0.014 3.1E-07 48.7 4.2 32 1-32 1-33 (382)
186 PRK05192 tRNA uridine 5-carbox 95.7 0.011 2.3E-07 52.9 3.6 31 1-31 6-36 (618)
187 PRK08244 hypothetical protein; 95.7 0.013 2.9E-07 50.9 4.1 33 1-33 4-36 (493)
188 PRK07608 ubiquinone biosynthes 95.7 0.015 3.2E-07 48.6 4.3 33 1-33 7-39 (388)
189 PRK06184 hypothetical protein; 95.6 0.014 3.1E-07 50.8 4.2 33 1-33 5-37 (502)
190 TIGR02023 BchP-ChlP geranylger 95.6 0.014 2.9E-07 49.2 3.9 31 1-31 2-32 (388)
191 PRK07494 2-octaprenyl-6-methox 95.6 0.016 3.4E-07 48.6 4.3 32 1-32 9-40 (388)
192 COG3634 AhpF Alkyl hydroperoxi 95.6 0.1 2.2E-06 43.7 8.7 83 1-83 213-326 (520)
193 PRK07045 putative monooxygenas 95.6 0.014 3.1E-07 48.9 3.9 33 1-33 7-39 (388)
194 PRK08013 oxidoreductase; Provi 95.6 0.017 3.7E-07 48.8 4.3 33 1-33 5-37 (400)
195 KOG0399 Glutamate synthase [Am 95.6 0.0089 1.9E-07 56.4 2.6 34 1-34 1787-1820(2142)
196 PRK12266 glpD glycerol-3-phosp 95.6 0.016 3.4E-07 50.9 4.1 32 1-32 8-39 (508)
197 COG0562 Glf UDP-galactopyranos 95.5 0.021 4.6E-07 47.1 4.5 33 1-33 3-35 (374)
198 PRK11728 hydroxyglutarate oxid 95.5 0.017 3.7E-07 48.7 4.0 32 1-32 4-37 (393)
199 PRK12770 putative glutamate sy 95.5 0.018 3.8E-07 48.0 4.0 34 1-34 20-53 (352)
200 PRK08163 salicylate hydroxylas 95.5 0.017 3.7E-07 48.5 4.0 33 1-33 6-38 (396)
201 PRK10157 putative oxidoreducta 95.4 0.019 4.1E-07 49.2 4.2 32 1-32 7-38 (428)
202 PTZ00188 adrenodoxin reductase 95.4 0.019 4.1E-07 50.1 4.1 34 1-34 41-75 (506)
203 PLN00093 geranylgeranyl diphos 95.4 0.019 4E-07 49.7 4.0 33 1-33 41-73 (450)
204 PRK10015 oxidoreductase; Provi 95.4 0.021 4.6E-07 48.9 4.4 32 1-32 7-38 (429)
205 TIGR01790 carotene-cycl lycope 95.4 0.021 4.6E-07 47.8 4.3 32 1-32 1-32 (388)
206 PRK06185 hypothetical protein; 95.4 0.019 4.1E-07 48.4 4.0 32 1-32 8-39 (407)
207 PRK05714 2-octaprenyl-3-methyl 95.4 0.019 4.2E-07 48.4 4.0 32 1-32 4-35 (405)
208 PRK06126 hypothetical protein; 95.4 0.019 4.2E-07 50.5 4.1 32 1-32 9-40 (545)
209 KOG0404 Thioredoxin reductase 95.3 0.1 2.3E-06 41.2 7.5 29 1-29 10-38 (322)
210 PF12831 FAD_oxidored: FAD dep 95.3 0.016 3.6E-07 49.6 3.5 33 1-33 1-33 (428)
211 PRK08020 ubiF 2-octaprenyl-3-m 95.3 0.022 4.7E-07 47.8 4.0 32 1-32 7-38 (391)
212 PRK00711 D-amino acid dehydrog 95.3 0.02 4.4E-07 48.3 3.9 32 1-32 2-33 (416)
213 PRK06475 salicylate hydroxylas 95.3 0.024 5.2E-07 47.9 4.2 33 1-33 4-36 (400)
214 TIGR00031 UDP-GALP_mutase UDP- 95.3 0.026 5.6E-07 47.8 4.3 32 1-32 3-34 (377)
215 PRK13369 glycerol-3-phosphate 95.2 0.023 5E-07 49.7 4.1 32 1-32 8-39 (502)
216 PRK06617 2-octaprenyl-6-methox 95.2 0.022 4.9E-07 47.7 3.9 31 1-31 3-33 (374)
217 COG0644 FixC Dehydrogenases (f 95.2 0.027 5.8E-07 47.7 4.4 33 1-33 5-37 (396)
218 KOG0399 Glutamate synthase [Am 95.2 0.27 5.8E-06 47.1 10.9 88 68-157 2041-2134(2142)
219 PRK11101 glpA sn-glycerol-3-ph 95.2 0.024 5.1E-07 50.2 4.2 32 1-32 8-39 (546)
220 TIGR03364 HpnW_proposed FAD de 95.2 0.027 5.9E-07 46.8 4.3 32 1-32 2-33 (365)
221 PRK12810 gltD glutamate syntha 95.2 0.024 5.1E-07 49.2 4.0 33 1-33 145-177 (471)
222 COG0654 UbiH 2-polyprenyl-6-me 95.2 0.023 4.9E-07 47.9 3.8 31 1-31 4-34 (387)
223 PRK11445 putative oxidoreducta 95.2 0.023 5.1E-07 47.2 3.8 31 1-32 3-33 (351)
224 PF13241 NAD_binding_7: Putati 95.1 0.019 4.2E-07 39.3 2.7 32 1-32 9-40 (103)
225 PRK08849 2-octaprenyl-3-methyl 95.1 0.025 5.5E-07 47.5 3.9 32 1-32 5-36 (384)
226 PRK08243 4-hydroxybenzoate 3-m 95.1 0.025 5.4E-07 47.7 3.8 33 1-33 4-36 (392)
227 PRK11883 protoporphyrinogen ox 95.1 0.026 5.6E-07 48.1 4.0 33 1-33 2-36 (451)
228 PRK12831 putative oxidoreducta 95.1 0.024 5.3E-07 49.1 3.8 32 1-32 142-173 (464)
229 PRK08850 2-octaprenyl-6-methox 95.1 0.025 5.4E-07 47.8 3.8 31 1-31 6-36 (405)
230 KOG1800 Ferredoxin/adrenodoxin 95.1 0.061 1.3E-06 45.4 5.9 80 1-83 22-121 (468)
231 TIGR01316 gltA glutamate synth 95.1 0.026 5.5E-07 48.7 3.9 33 1-33 135-167 (449)
232 PRK07333 2-octaprenyl-6-methox 95.1 0.03 6.6E-07 47.0 4.2 32 1-32 3-36 (403)
233 PRK06834 hypothetical protein; 95.0 0.027 5.8E-07 49.2 3.9 32 1-32 5-36 (488)
234 PRK05732 2-octaprenyl-6-methox 95.0 0.029 6.3E-07 47.0 3.9 31 1-31 5-38 (395)
235 PRK07190 hypothetical protein; 95.0 0.026 5.7E-07 49.2 3.8 32 1-32 7-38 (487)
236 TIGR02360 pbenz_hydroxyl 4-hyd 95.0 0.028 6E-07 47.5 3.8 33 1-33 4-36 (390)
237 PRK08132 FAD-dependent oxidore 95.0 0.029 6.3E-07 49.5 4.1 32 1-32 25-56 (547)
238 TIGR02731 phytoene_desat phyto 94.9 0.033 7.1E-07 47.8 4.2 33 1-33 1-33 (453)
239 TIGR01989 COQ6 Ubiquinone bios 94.9 0.033 7.1E-07 47.8 4.1 31 1-31 2-36 (437)
240 PRK07538 hypothetical protein; 94.9 0.034 7.3E-07 47.2 4.1 33 1-33 2-34 (413)
241 PLN02268 probable polyamine ox 94.9 0.038 8.3E-07 47.1 4.4 32 1-32 2-33 (435)
242 PRK06183 mhpA 3-(3-hydroxyphen 94.9 0.035 7.7E-07 48.9 4.3 33 1-33 12-44 (538)
243 PRK07208 hypothetical protein; 94.9 0.035 7.6E-07 48.0 4.2 33 1-33 6-38 (479)
244 PLN02464 glycerol-3-phosphate 94.9 0.035 7.5E-07 50.0 4.2 32 1-32 73-104 (627)
245 PRK08294 phenol 2-monooxygenas 94.8 0.034 7.3E-07 50.2 4.1 33 1-33 34-67 (634)
246 PRK12769 putative oxidoreducta 94.8 0.035 7.6E-07 50.2 4.0 33 1-33 329-361 (654)
247 PF00890 FAD_binding_2: FAD bi 94.7 0.039 8.6E-07 46.7 4.0 33 1-33 1-33 (417)
248 TIGR00562 proto_IX_ox protopor 94.7 0.041 8.9E-07 47.2 4.1 33 1-33 4-40 (462)
249 TIGR01318 gltD_gamma_fam gluta 94.6 0.045 9.7E-07 47.5 4.1 33 1-33 143-175 (467)
250 KOG0029 Amine oxidase [Seconda 94.6 0.046 1E-06 47.9 4.2 33 1-33 17-49 (501)
251 TIGR01373 soxB sarcosine oxida 94.5 0.046 9.9E-07 46.2 4.0 32 1-32 32-65 (407)
252 COG0665 DadA Glycine/D-amino a 94.5 0.047 1E-06 45.5 4.0 32 1-32 6-37 (387)
253 PF01210 NAD_Gly3P_dh_N: NAD-d 94.5 0.033 7.3E-07 41.0 2.8 32 1-32 1-32 (157)
254 PF00732 GMC_oxred_N: GMC oxid 94.5 0.046 1E-06 44.0 3.8 34 1-34 2-36 (296)
255 PRK01747 mnmC bifunctional tRN 94.5 0.045 9.7E-07 49.5 4.0 32 1-32 262-293 (662)
256 TIGR02734 crtI_fam phytoene de 94.5 0.042 9.1E-07 47.8 3.7 32 2-33 1-32 (502)
257 PLN02985 squalene monooxygenas 94.4 0.048 1E-06 48.0 4.0 32 1-32 45-76 (514)
258 TIGR03329 Phn_aa_oxid putative 94.4 0.049 1.1E-06 47.0 4.1 32 1-32 26-59 (460)
259 PRK12814 putative NADPH-depend 94.4 0.047 1E-06 49.4 4.0 33 1-33 195-227 (652)
260 COG1233 Phytoene dehydrogenase 94.4 0.058 1.2E-06 47.1 4.4 33 1-33 5-37 (487)
261 TIGR01470 cysG_Nterm siroheme 94.4 0.053 1.2E-06 41.9 3.7 31 1-31 11-41 (205)
262 TIGR01813 flavo_cyto_c flavocy 94.4 0.057 1.2E-06 46.2 4.2 32 1-32 1-33 (439)
263 TIGR01317 GOGAT_sm_gam glutama 94.3 0.049 1.1E-06 47.5 3.8 33 1-33 145-177 (485)
264 PF13434 K_oxygenase: L-lysine 94.3 0.14 3.1E-06 42.6 6.4 35 1-35 4-39 (341)
265 PRK08274 tricarballylate dehyd 94.3 0.056 1.2E-06 46.6 4.1 32 1-32 6-37 (466)
266 COG0578 GlpA Glycerol-3-phosph 94.3 0.061 1.3E-06 47.4 4.3 32 1-32 14-45 (532)
267 PRK06996 hypothetical protein; 94.3 0.06 1.3E-06 45.5 4.1 32 1-32 13-48 (398)
268 PLN02576 protoporphyrinogen ox 94.2 0.058 1.3E-06 46.8 4.1 33 1-33 14-47 (496)
269 PRK12809 putative oxidoreducta 94.2 0.051 1.1E-06 49.0 3.7 33 1-33 312-344 (639)
270 TIGR02733 desat_CrtD C-3',4' d 94.2 0.065 1.4E-06 46.6 4.2 33 1-33 3-35 (492)
271 PLN02927 antheraxanthin epoxid 94.0 0.065 1.4E-06 48.6 4.0 32 1-32 83-114 (668)
272 TIGR01320 mal_quin_oxido malat 93.9 0.072 1.6E-06 46.5 4.1 31 1-31 2-34 (483)
273 COG1251 NirB NAD(P)H-nitrite r 93.9 0.45 9.7E-06 43.4 8.9 88 1-88 5-119 (793)
274 PF02737 3HCDH_N: 3-hydroxyacy 93.9 0.054 1.2E-06 41.0 2.9 32 1-32 1-32 (180)
275 PTZ00188 adrenodoxin reductase 93.9 0.082 1.8E-06 46.2 4.2 34 1-34 199-253 (506)
276 PRK07121 hypothetical protein; 93.8 0.079 1.7E-06 46.2 4.1 32 1-32 22-53 (492)
277 PRK06719 precorrin-2 dehydroge 93.8 0.081 1.8E-06 39.2 3.6 29 1-29 15-43 (157)
278 TIGR02730 carot_isom carotene 93.7 0.087 1.9E-06 45.9 4.2 33 1-33 2-34 (493)
279 PRK12416 protoporphyrinogen ox 93.6 0.083 1.8E-06 45.5 3.9 33 1-33 3-41 (463)
280 COG3349 Uncharacterized conser 93.6 0.086 1.9E-06 45.9 3.9 33 1-33 2-34 (485)
281 PRK09897 hypothetical protein; 93.6 0.085 1.8E-06 46.7 3.9 32 1-32 3-36 (534)
282 COG0446 HcaD Uncharacterized N 93.5 0.61 1.3E-05 38.8 8.8 83 2-85 1-109 (415)
283 PTZ00367 squalene epoxidase; P 93.4 0.095 2.1E-06 46.7 3.9 32 1-32 35-66 (567)
284 TIGR02732 zeta_caro_desat caro 93.3 0.11 2.5E-06 45.1 4.2 34 1-34 1-34 (474)
285 PRK08401 L-aspartate oxidase; 93.3 0.11 2.3E-06 45.1 4.0 31 1-31 3-33 (466)
286 PF02558 ApbA: Ketopantoate re 93.2 0.12 2.7E-06 37.3 3.7 31 2-32 1-31 (151)
287 PRK12771 putative glutamate sy 93.2 0.11 2.3E-06 46.2 4.0 33 1-33 139-171 (564)
288 PRK06481 fumarate reductase fl 93.1 0.12 2.5E-06 45.4 4.1 32 1-32 63-94 (506)
289 PRK06718 precorrin-2 dehydroge 93.1 0.12 2.6E-06 39.9 3.7 30 1-30 12-41 (202)
290 PTZ00383 malate:quinone oxidor 93.1 0.12 2.5E-06 45.4 4.0 32 1-32 47-80 (497)
291 TIGR00136 gidA glucose-inhibit 93.1 0.1 2.2E-06 46.8 3.7 31 1-31 2-32 (617)
292 TIGR01812 sdhA_frdA_Gneg succi 93.0 0.12 2.5E-06 45.9 3.9 32 1-32 1-32 (566)
293 PRK05257 malate:quinone oxidor 92.9 0.11 2.3E-06 45.6 3.6 32 1-32 7-40 (494)
294 PLN02661 Putative thiazole syn 92.9 0.13 2.7E-06 43.2 3.7 32 1-32 94-126 (357)
295 PRK12842 putative succinate de 92.9 0.13 2.8E-06 45.8 4.0 32 1-32 11-42 (574)
296 COG0579 Predicted dehydrogenas 92.8 0.15 3.2E-06 43.9 4.0 33 1-33 5-39 (429)
297 PF04820 Trp_halogenase: Trypt 92.6 0.11 2.5E-06 44.9 3.3 32 1-32 1-35 (454)
298 PRK12837 3-ketosteroid-delta-1 92.6 0.15 3.3E-06 44.7 4.1 31 1-32 9-39 (513)
299 PRK12834 putative FAD-binding 92.6 0.16 3.4E-06 45.0 4.1 32 1-32 6-37 (549)
300 KOG1298 Squalene monooxygenase 92.5 0.19 4E-06 42.7 4.2 31 1-31 47-77 (509)
301 PLN02529 lysine-specific histo 92.5 0.16 3.4E-06 46.7 4.1 32 1-32 162-193 (738)
302 PRK13339 malate:quinone oxidor 92.4 0.16 3.5E-06 44.5 3.9 30 1-30 8-39 (497)
303 PRK08255 salicylyl-CoA 5-hydro 92.3 0.16 3.5E-06 46.8 4.0 33 1-33 2-36 (765)
304 PLN02676 polyamine oxidase 92.3 0.17 3.7E-06 44.2 4.0 33 1-33 28-61 (487)
305 COG4529 Uncharacterized protei 92.3 0.18 3.9E-06 43.7 3.9 33 1-33 3-38 (474)
306 PLN02568 polyamine oxidase 92.3 0.19 4.1E-06 44.5 4.2 33 1-33 7-44 (539)
307 PTZ00363 rab-GDP dissociation 92.3 0.17 3.7E-06 43.7 3.9 33 1-33 6-38 (443)
308 PLN02487 zeta-carotene desatur 92.2 0.19 4.1E-06 44.9 4.1 34 1-34 77-110 (569)
309 PRK02106 choline dehydrogenase 92.1 0.18 3.9E-06 44.7 4.0 32 1-32 7-39 (560)
310 PRK07804 L-aspartate oxidase; 92.1 0.2 4.3E-06 44.3 4.1 32 1-32 18-49 (541)
311 PRK05562 precorrin-2 dehydroge 92.0 0.21 4.5E-06 39.2 3.7 31 1-31 27-57 (223)
312 PRK07803 sdhA succinate dehydr 92.0 0.18 4E-06 45.4 3.9 32 1-32 10-41 (626)
313 PF01488 Shikimate_DH: Shikima 91.9 0.23 5E-06 35.6 3.7 32 1-32 14-46 (135)
314 PRK12844 3-ketosteroid-delta-1 91.9 0.2 4.3E-06 44.5 4.0 32 1-32 8-39 (557)
315 KOG1346 Programmed cell death 91.8 0.62 1.3E-05 40.1 6.5 39 51-89 279-319 (659)
316 PRK06854 adenylylsulfate reduc 91.8 0.21 4.6E-06 44.9 4.1 32 1-32 13-46 (608)
317 PRK12835 3-ketosteroid-delta-1 91.8 0.2 4.4E-06 44.8 4.0 32 1-32 13-44 (584)
318 PRK07057 sdhA succinate dehydr 91.7 0.22 4.8E-06 44.6 4.0 31 1-31 14-44 (591)
319 PRK08626 fumarate reductase fl 91.7 0.21 4.6E-06 45.3 3.9 32 1-32 7-38 (657)
320 PRK06452 sdhA succinate dehydr 91.7 0.23 4.9E-06 44.3 4.0 31 1-31 7-37 (566)
321 PLN02328 lysine-specific histo 91.7 0.23 4.9E-06 46.1 4.1 32 1-32 240-271 (808)
322 PRK08641 sdhA succinate dehydr 91.6 0.21 4.6E-06 44.7 3.9 31 1-31 5-35 (589)
323 PRK09078 sdhA succinate dehydr 91.6 0.23 5E-06 44.5 4.0 32 1-32 14-45 (598)
324 PRK05329 anaerobic glycerol-3- 91.5 0.23 5E-06 42.7 3.8 31 1-31 4-34 (422)
325 COG0493 GltD NADPH-dependent g 91.5 0.24 5.1E-06 43.0 3.9 30 1-30 264-294 (457)
326 COG0493 GltD NADPH-dependent g 91.5 0.22 4.8E-06 43.2 3.7 33 1-33 125-157 (457)
327 TIGR00551 nadB L-aspartate oxi 91.4 0.25 5.5E-06 43.1 4.0 31 1-32 4-34 (488)
328 PRK06069 sdhA succinate dehydr 91.4 0.24 5.2E-06 44.2 3.9 32 1-32 7-41 (577)
329 TIGR00275 flavoprotein, HI0933 91.3 0.16 3.5E-06 43.1 2.7 30 3-32 1-30 (400)
330 PF13454 NAD_binding_9: FAD-NA 91.3 0.22 4.8E-06 36.5 3.1 30 3-32 1-35 (156)
331 PRK07573 sdhA succinate dehydr 91.2 0.26 5.6E-06 44.6 4.0 30 1-30 37-66 (640)
332 PTZ00139 Succinate dehydrogena 91.2 0.27 5.8E-06 44.3 4.0 32 1-32 31-62 (617)
333 PRK04148 hypothetical protein; 91.0 0.26 5.7E-06 35.6 3.1 32 1-33 19-50 (134)
334 TIGR01811 sdhA_Bsu succinate d 90.9 0.22 4.8E-06 44.7 3.3 31 2-32 1-31 (603)
335 PRK08275 putative oxidoreducta 90.9 0.3 6.5E-06 43.3 4.1 32 1-32 11-44 (554)
336 PLN02612 phytoene desaturase 90.9 0.33 7.3E-06 43.2 4.3 33 1-33 95-127 (567)
337 PLN03000 amine oxidase 90.9 0.31 6.6E-06 45.6 4.1 32 1-32 186-217 (881)
338 PRK07843 3-ketosteroid-delta-1 90.8 0.3 6.5E-06 43.4 4.0 32 1-32 9-40 (557)
339 PRK06522 2-dehydropantoate 2-r 90.7 0.31 6.7E-06 39.3 3.7 32 1-32 2-33 (304)
340 PRK13984 putative oxidoreducta 90.7 0.3 6.6E-06 43.7 3.9 33 1-33 285-317 (604)
341 PRK08958 sdhA succinate dehydr 90.7 0.32 6.9E-06 43.6 4.0 32 1-32 9-40 (588)
342 PRK06134 putative FAD-binding 90.6 0.37 8E-06 43.1 4.4 32 1-32 14-45 (581)
343 TIGR02462 pyranose_ox pyranose 90.6 0.35 7.6E-06 42.9 4.2 33 1-33 2-34 (544)
344 TIGR01810 betA choline dehydro 90.6 0.38 8.2E-06 42.4 4.4 32 1-32 1-33 (532)
345 PRK07819 3-hydroxybutyryl-CoA 90.6 0.29 6.4E-06 39.7 3.5 33 1-33 7-39 (286)
346 PLN00128 Succinate dehydrogena 90.4 0.35 7.6E-06 43.7 4.1 32 1-32 52-83 (635)
347 PRK08293 3-hydroxybutyryl-CoA 90.4 0.33 7.2E-06 39.3 3.6 32 1-32 5-36 (287)
348 COG1232 HemY Protoporphyrinoge 90.4 0.35 7.5E-06 41.9 3.8 32 1-32 2-35 (444)
349 cd05191 NAD_bind_amino_acid_DH 90.3 0.42 9.1E-06 31.4 3.4 30 1-30 25-55 (86)
350 PRK05329 anaerobic glycerol-3- 90.2 3.7 7.9E-05 35.4 10.0 82 3-84 219-320 (422)
351 PRK05945 sdhA succinate dehydr 90.2 0.34 7.4E-06 43.2 3.8 32 1-32 5-38 (575)
352 PF13460 NAD_binding_10: NADH( 90.2 0.45 9.6E-06 35.2 3.9 32 2-33 1-33 (183)
353 PRK14106 murD UDP-N-acetylmura 90.0 0.38 8.3E-06 41.3 3.8 32 1-32 7-38 (450)
354 PRK02705 murD UDP-N-acetylmura 89.9 0.38 8.2E-06 41.4 3.7 32 1-32 2-33 (459)
355 PRK05708 2-dehydropantoate 2-r 89.9 0.41 8.9E-06 39.2 3.8 32 1-32 4-35 (305)
356 TIGR02061 aprA adenosine phosp 89.8 0.45 9.8E-06 42.9 4.2 31 1-31 1-35 (614)
357 PRK12921 2-dehydropantoate 2-r 89.7 0.41 8.9E-06 38.7 3.6 30 1-30 2-31 (305)
358 PRK08205 sdhA succinate dehydr 89.6 0.42 9.1E-06 42.7 3.9 31 1-32 7-37 (583)
359 COG3380 Predicted NAD/FAD-depe 89.6 0.54 1.2E-05 38.2 4.0 32 1-32 3-34 (331)
360 PLN02815 L-aspartate oxidase 89.6 0.43 9.2E-06 42.9 3.9 31 1-32 31-61 (594)
361 PF00899 ThiF: ThiF family; I 89.5 0.52 1.1E-05 33.6 3.7 31 1-31 4-35 (135)
362 PF02254 TrkA_N: TrkA-N domain 89.4 0.5 1.1E-05 32.4 3.4 31 2-32 1-31 (116)
363 PRK07395 L-aspartate oxidase; 89.4 0.45 9.8E-06 42.3 3.9 31 1-32 11-41 (553)
364 PRK09077 L-aspartate oxidase; 89.4 0.41 9E-06 42.3 3.6 31 1-32 10-40 (536)
365 PRK07066 3-hydroxybutyryl-CoA 89.3 0.45 9.8E-06 39.4 3.6 32 1-32 9-40 (321)
366 KOG2614 Kynurenine 3-monooxyge 89.3 0.57 1.2E-05 39.9 4.2 34 1-34 4-37 (420)
367 PF03807 F420_oxidored: NADP o 89.3 0.42 9.2E-06 31.7 2.9 31 1-31 1-35 (96)
368 PRK09260 3-hydroxybutyryl-CoA 89.2 0.4 8.6E-06 38.8 3.2 32 1-32 3-34 (288)
369 COG0771 MurD UDP-N-acetylmuram 89.2 0.63 1.4E-05 40.3 4.5 74 1-88 9-87 (448)
370 PRK06263 sdhA succinate dehydr 89.2 0.46 1E-05 42.0 3.8 31 1-32 9-39 (543)
371 PLN02785 Protein HOTHEAD 89.1 0.51 1.1E-05 42.3 4.0 31 1-32 57-87 (587)
372 PRK06175 L-aspartate oxidase; 89.0 0.46 1E-05 40.8 3.6 31 1-32 6-36 (433)
373 COG3075 GlpB Anaerobic glycero 89.0 0.54 1.2E-05 39.2 3.7 32 1-32 4-35 (421)
374 PRK08071 L-aspartate oxidase; 88.8 0.5 1.1E-05 41.5 3.8 31 1-32 5-35 (510)
375 PRK13977 myosin-cross-reactive 88.8 0.51 1.1E-05 42.1 3.7 32 1-32 24-59 (576)
376 PRK07530 3-hydroxybutyryl-CoA 88.7 0.48 1E-05 38.4 3.4 32 1-32 6-37 (292)
377 cd01080 NAD_bind_m-THF_DH_Cycl 88.7 0.66 1.4E-05 34.8 3.8 31 1-31 46-77 (168)
378 PRK13800 putative oxidoreducta 88.7 0.53 1.2E-05 44.3 4.0 32 1-32 15-46 (897)
379 PRK06249 2-dehydropantoate 2-r 88.6 0.59 1.3E-05 38.3 3.9 32 1-32 7-38 (313)
380 PRK12845 3-ketosteroid-delta-1 88.6 0.65 1.4E-05 41.4 4.3 31 1-32 18-48 (564)
381 COG0569 TrkA K+ transport syst 88.5 0.56 1.2E-05 36.7 3.5 32 1-32 2-33 (225)
382 PRK06035 3-hydroxyacyl-CoA deh 88.5 0.5 1.1E-05 38.2 3.4 32 1-32 5-36 (291)
383 COG2303 BetA Choline dehydroge 88.4 0.7 1.5E-05 41.0 4.4 32 1-32 9-40 (542)
384 KOG2495 NADH-dehydrogenase (ub 88.3 2.6 5.7E-05 36.4 7.5 34 1-34 57-90 (491)
385 PRK06129 3-hydroxyacyl-CoA deh 88.3 0.52 1.1E-05 38.5 3.3 32 1-32 4-35 (308)
386 PRK12843 putative FAD-binding 88.3 0.61 1.3E-05 41.6 4.0 32 1-32 18-49 (578)
387 PRK09231 fumarate reductase fl 88.2 0.58 1.3E-05 41.9 3.8 32 1-32 6-39 (582)
388 PRK15116 sulfur acceptor prote 88.1 0.7 1.5E-05 37.3 3.8 32 1-32 32-64 (268)
389 KOG1276 Protoporphyrinogen oxi 88.1 0.52 1.1E-05 40.5 3.2 31 1-31 13-45 (491)
390 PF13454 NAD_binding_9: FAD-NA 87.8 1.1 2.4E-05 32.8 4.5 31 50-80 122-155 (156)
391 TIGR02354 thiF_fam2 thiamine b 87.6 0.82 1.8E-05 35.2 3.8 31 1-31 23-54 (200)
392 PTZ00306 NADH-dependent fumara 87.4 0.71 1.5E-05 44.7 4.1 32 1-32 411-442 (1167)
393 PLN02545 3-hydroxybutyryl-CoA 87.4 0.67 1.4E-05 37.6 3.4 32 1-32 6-37 (295)
394 COG1648 CysG Siroheme synthase 87.3 0.81 1.8E-05 35.6 3.7 32 1-32 14-45 (210)
395 TIGR01176 fum_red_Fp fumarate 87.3 0.68 1.5E-05 41.4 3.7 32 1-32 5-38 (580)
396 cd05294 LDH-like_MDH_nadp A la 87.3 1.5 3.2E-05 36.1 5.4 32 1-32 2-36 (309)
397 COG1053 SdhA Succinate dehydro 87.3 0.87 1.9E-05 40.6 4.3 33 1-33 8-40 (562)
398 PRK12839 hypothetical protein; 87.2 0.84 1.8E-05 40.8 4.2 32 1-32 10-41 (572)
399 cd01078 NAD_bind_H4MPT_DH NADP 87.1 0.83 1.8E-05 34.6 3.6 32 1-32 30-62 (194)
400 COG2907 Predicted NAD/FAD-bind 87.1 0.67 1.5E-05 39.0 3.2 29 1-30 10-38 (447)
401 cd01483 E1_enzyme_family Super 87.0 1 2.3E-05 32.2 3.9 31 1-31 1-32 (143)
402 TIGR03378 glycerol3P_GlpB glyc 86.9 0.83 1.8E-05 39.3 3.8 32 1-32 2-33 (419)
403 COG1231 Monoamine oxidase [Ami 86.9 1 2.2E-05 38.9 4.3 33 1-33 9-41 (450)
404 PRK14620 NAD(P)H-dependent gly 86.9 0.83 1.8E-05 37.6 3.7 32 1-32 2-33 (326)
405 PLN02976 amine oxidase 86.6 0.84 1.8E-05 45.1 4.0 32 1-32 695-726 (1713)
406 PF02826 2-Hacid_dh_C: D-isome 86.6 0.97 2.1E-05 33.9 3.7 32 1-32 38-69 (178)
407 cd01065 NAD_bind_Shikimate_DH 86.5 0.84 1.8E-05 32.9 3.2 32 1-32 21-53 (155)
408 PRK06130 3-hydroxybutyryl-CoA 86.4 0.85 1.8E-05 37.2 3.5 32 1-32 6-37 (311)
409 PF00056 Ldh_1_N: lactate/mala 86.3 1.1 2.4E-05 32.4 3.7 32 1-32 2-36 (141)
410 PF03721 UDPG_MGDP_dh_N: UDP-g 86.1 1 2.2E-05 34.2 3.6 79 1-80 2-86 (185)
411 PRK07512 L-aspartate oxidase; 86.1 0.82 1.8E-05 40.2 3.5 30 1-32 11-40 (513)
412 TIGR02853 spore_dpaA dipicolin 85.9 0.89 1.9E-05 37.0 3.4 32 1-32 153-184 (287)
413 PRK00094 gpsA NAD(P)H-dependen 85.9 0.91 2E-05 37.0 3.5 32 1-32 3-34 (325)
414 PF10100 DUF2338: Uncharacteri 85.7 1 2.2E-05 38.4 3.6 32 1-32 3-35 (429)
415 KOG0042 Glycerol-3-phosphate d 85.4 0.47 1E-05 42.0 1.6 32 1-32 69-100 (680)
416 PRK05808 3-hydroxybutyryl-CoA 85.4 0.89 1.9E-05 36.6 3.1 32 1-32 5-36 (282)
417 cd01487 E1_ThiF_like E1_ThiF_l 85.3 1.3 2.9E-05 33.2 3.9 31 1-31 1-32 (174)
418 COG3573 Predicted oxidoreducta 85.3 1.2 2.7E-05 37.4 3.9 32 1-32 7-38 (552)
419 PRK00536 speE spermidine synth 85.0 1.3 2.7E-05 35.7 3.8 30 1-32 75-104 (262)
420 PRK00258 aroE shikimate 5-dehy 84.8 1.2 2.6E-05 35.9 3.6 32 1-32 125-157 (278)
421 cd01485 E1-1_like Ubiquitin ac 84.8 1.6 3.4E-05 33.5 4.1 31 1-31 21-52 (198)
422 PRK08229 2-dehydropantoate 2-r 84.7 1.2 2.5E-05 36.8 3.6 32 1-32 4-35 (341)
423 COG0029 NadB Aspartate oxidase 84.5 1.1 2.3E-05 39.3 3.3 32 1-33 9-40 (518)
424 TIGR02356 adenyl_thiF thiazole 84.4 1.4 3.1E-05 33.8 3.8 31 1-31 23-54 (202)
425 cd00757 ThiF_MoeB_HesA_family 84.3 1.5 3.2E-05 34.3 3.8 31 1-31 23-54 (228)
426 KOG0685 Flavin-containing amin 84.2 1.6 3.5E-05 37.9 4.3 31 1-31 23-54 (498)
427 KOG0405 Pyridine nucleotide-di 84.1 16 0.00035 31.1 9.8 30 2-31 23-52 (478)
428 cd05292 LDH_2 A subgroup of L- 83.9 1.5 3.2E-05 36.0 3.9 32 1-32 2-35 (308)
429 cd01484 E1-2_like Ubiquitin ac 83.8 1.7 3.7E-05 34.3 4.0 31 1-31 1-32 (234)
430 PRK12475 thiamine/molybdopteri 83.7 1.5 3.2E-05 36.6 3.8 32 1-32 26-58 (338)
431 PF01262 AlaDh_PNT_C: Alanine 83.6 1.5 3.4E-05 32.5 3.6 32 1-32 22-53 (168)
432 COG1206 Gid NAD(FAD)-utilizing 83.6 1.5 3.2E-05 36.8 3.6 33 1-33 5-37 (439)
433 PRK14618 NAD(P)H-dependent gly 83.5 1.5 3.3E-05 36.0 3.8 32 1-32 6-37 (328)
434 PRK09496 trkA potassium transp 83.5 1.2 2.7E-05 38.0 3.4 32 1-32 2-33 (453)
435 PRK07417 arogenate dehydrogena 83.5 1.3 2.8E-05 35.7 3.3 32 1-32 2-33 (279)
436 cd01489 Uba2_SUMO Ubiquitin ac 83.4 1.6 3.5E-05 36.0 3.8 31 1-31 1-32 (312)
437 cd01492 Aos1_SUMO Ubiquitin ac 83.4 2 4.3E-05 32.9 4.1 31 1-31 23-54 (197)
438 PRK14175 bifunctional 5,10-met 83.3 1.8 3.9E-05 35.3 4.1 31 1-31 160-191 (286)
439 cd05213 NAD_bind_Glutamyl_tRNA 83.2 1.3 2.8E-05 36.4 3.2 32 1-32 180-212 (311)
440 TIGR01505 tartro_sem_red 2-hyd 83.1 1.4 3E-05 35.6 3.4 32 1-32 1-32 (291)
441 PF01118 Semialdhyde_dh: Semia 83.1 1.4 2.9E-05 30.8 2.9 32 1-32 1-35 (121)
442 cd01338 MDH_choloroplast_like 83.0 2.4 5.2E-05 35.1 4.8 32 1-32 4-43 (322)
443 PRK07688 thiamine/molybdopteri 83.0 1.8 3.8E-05 36.2 4.0 31 1-31 26-57 (339)
444 TIGR01915 npdG NADPH-dependent 83.0 1.7 3.7E-05 33.7 3.7 32 1-32 2-34 (219)
445 PRK08306 dipicolinate synthase 82.9 1.7 3.6E-05 35.5 3.8 32 1-32 154-185 (296)
446 cd01075 NAD_bind_Leu_Phe_Val_D 82.7 1.7 3.6E-05 33.4 3.5 31 1-31 30-60 (200)
447 COG1748 LYS9 Saccharopine dehy 82.3 2 4.4E-05 36.6 4.1 32 1-32 3-35 (389)
448 cd05291 HicDH_like L-2-hydroxy 81.9 2 4.4E-05 35.1 4.0 33 1-33 2-36 (306)
449 KOG1335 Dihydrolipoamide dehyd 81.8 18 0.0004 31.1 9.4 33 1-33 41-73 (506)
450 cd05311 NAD_bind_2_malic_enz N 81.7 1.7 3.8E-05 34.0 3.3 32 1-32 27-61 (226)
451 TIGR00518 alaDH alanine dehydr 81.7 1.8 4E-05 36.5 3.7 32 1-32 169-200 (370)
452 cd01488 Uba3_RUB Ubiquitin act 81.7 2.1 4.6E-05 35.0 3.9 31 1-31 1-32 (291)
453 TIGR01035 hemA glutamyl-tRNA r 81.6 1.8 3.9E-05 37.1 3.6 32 1-32 182-214 (417)
454 TIGR03026 NDP-sugDHase nucleot 81.5 2 4.3E-05 36.6 3.9 32 1-32 2-33 (411)
455 COG3486 IucD Lysine/ornithine 81.5 12 0.00026 32.2 8.3 36 1-36 7-43 (436)
456 COG1893 ApbA Ketopantoate redu 81.5 1.8 3.9E-05 35.6 3.5 33 1-33 2-34 (307)
457 PRK07531 bifunctional 3-hydrox 81.2 1.8 3.9E-05 38.0 3.6 32 1-32 6-37 (495)
458 PRK14619 NAD(P)H-dependent gly 81.2 2 4.4E-05 35.1 3.7 32 1-32 6-37 (308)
459 cd01490 Ube1_repeat2 Ubiquitin 81.0 2.1 4.6E-05 37.0 3.8 31 1-31 1-37 (435)
460 TIGR02279 PaaC-3OHAcCoADH 3-hy 80.9 1.7 3.8E-05 38.2 3.4 32 1-32 7-38 (503)
461 PRK08644 thiamine biosynthesis 80.8 2.6 5.6E-05 32.7 4.0 31 1-31 30-61 (212)
462 PRK11730 fadB multifunctional 80.5 1.9 4.1E-05 39.7 3.6 32 1-32 315-346 (715)
463 TIGR02355 moeB molybdopterin s 80.5 2.6 5.6E-05 33.4 3.9 31 1-31 26-57 (240)
464 PRK01710 murD UDP-N-acetylmura 80.3 2.2 4.7E-05 36.9 3.8 32 1-32 16-47 (458)
465 COG2085 Predicted dinucleotide 80.2 2.6 5.7E-05 32.8 3.7 33 1-33 3-35 (211)
466 KOG3855 Monooxygenase involved 80.1 2.2 4.7E-05 36.7 3.5 31 1-31 38-72 (481)
467 PRK10637 cysG siroheme synthas 80.1 2.2 4.7E-05 37.1 3.7 31 1-31 14-44 (457)
468 PRK05690 molybdopterin biosynt 79.8 2.5 5.5E-05 33.5 3.7 31 1-31 34-65 (245)
469 PRK08328 hypothetical protein; 79.6 2.9 6.2E-05 32.9 3.9 31 1-31 29-60 (231)
470 PRK04690 murD UDP-N-acetylmura 79.5 2.6 5.5E-05 36.7 3.9 31 1-31 10-40 (468)
471 TIGR03376 glycerol3P_DH glycer 79.4 2.8 6E-05 35.1 4.0 32 1-32 1-40 (342)
472 PRK02472 murD UDP-N-acetylmura 79.3 2.2 4.9E-05 36.5 3.5 31 1-31 7-37 (447)
473 PRK14192 bifunctional 5,10-met 79.2 2.9 6.3E-05 34.0 3.9 31 1-31 161-192 (283)
474 PRK04308 murD UDP-N-acetylmura 79.0 2.7 5.8E-05 36.1 3.9 32 1-32 7-38 (445)
475 TIGR01763 MalateDH_bact malate 78.8 3.1 6.7E-05 34.1 4.0 32 1-32 3-35 (305)
476 PRK12549 shikimate 5-dehydroge 78.8 2.7 5.9E-05 34.1 3.6 32 1-32 129-161 (284)
477 TIGR02437 FadB fatty oxidation 78.7 2.3 5E-05 39.1 3.6 32 1-32 315-346 (714)
478 TIGR03649 ergot_EASG ergot alk 78.4 3.5 7.5E-05 32.8 4.2 33 1-33 1-34 (285)
479 PRK09496 trkA potassium transp 78.3 2.6 5.7E-05 36.0 3.6 32 1-32 233-264 (453)
480 PRK08268 3-hydroxy-acyl-CoA de 78.2 2.4 5.3E-05 37.3 3.4 33 1-33 9-41 (507)
481 TIGR01809 Shik-DH-AROM shikima 78.2 3.2 7E-05 33.6 3.9 32 1-32 127-159 (282)
482 PRK00676 hemA glutamyl-tRNA re 78.2 2.7 5.9E-05 35.1 3.5 32 1-32 176-208 (338)
483 PRK05442 malate dehydrogenase; 78.0 3.8 8.2E-05 34.0 4.3 32 1-32 6-45 (326)
484 KOG1800 Ferredoxin/adrenodoxin 77.9 1.4 3.1E-05 37.4 1.8 34 1-34 161-216 (468)
485 PRK00066 ldh L-lactate dehydro 77.9 3.5 7.5E-05 34.0 4.1 32 1-32 8-41 (315)
486 TIGR01214 rmlD dTDP-4-dehydror 77.7 3.4 7.4E-05 32.8 3.9 31 1-31 1-32 (287)
487 PRK08017 oxidoreductase; Provi 77.7 3.2 6.9E-05 32.2 3.7 32 1-32 4-36 (256)
488 COG0240 GpsA Glycerol-3-phosph 77.7 3.1 6.7E-05 34.6 3.7 33 1-33 3-35 (329)
489 PRK03369 murD UDP-N-acetylmura 77.5 2.8 6E-05 36.7 3.5 31 1-31 14-44 (488)
490 PRK07231 fabG 3-ketoacyl-(acyl 77.4 3.3 7.2E-05 31.9 3.7 32 1-32 7-39 (251)
491 PF10727 Rossmann-like: Rossma 77.3 2.1 4.5E-05 30.6 2.3 31 1-31 12-42 (127)
492 PF13478 XdhC_C: XdhC Rossmann 77.2 4.5 9.7E-05 29.2 4.0 32 2-33 1-32 (136)
493 PRK11154 fadJ multifunctional 77.1 2.7 5.8E-05 38.6 3.5 32 1-32 311-343 (708)
494 KOG2415 Electron transfer flav 77.0 1.5 3.3E-05 37.8 1.8 31 1-31 78-114 (621)
495 PF03435 Saccharop_dh: Sacchar 76.9 3.6 7.9E-05 34.6 4.0 31 2-32 1-33 (386)
496 cd01486 Apg7 Apg7 is an E1-lik 76.9 3.7 8E-05 33.8 3.9 31 1-31 1-32 (307)
497 PRK07502 cyclohexadienyl dehyd 76.9 2.7 5.9E-05 34.2 3.2 32 1-32 8-41 (307)
498 TIGR03385 CoA_CoA_reduc CoA-di 76.7 6.6 0.00014 33.4 5.6 41 48-88 63-109 (427)
499 cd01491 Ube1_repeat1 Ubiquitin 76.7 3.8 8.2E-05 33.4 3.9 32 1-32 21-53 (286)
500 PRK15461 NADH-dependent gamma- 76.6 3.1 6.7E-05 33.8 3.4 32 1-32 3-34 (296)
No 1
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=2.5e-38 Score=270.70 Aligned_cols=182 Identities=60% Similarity=1.062 Sum_probs=157.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCC-CCCCeEEcceeEEeeCCCeEEEcCCcEEecCEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQP-GFDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTG 79 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~-~~~~i~~~~~v~~~~~~~~v~~~dg~~~~~D~vi~atG 79 (182)
+|+|||+|+||+|+|.+|++.+++|++++|+........++ ...++..++.|.++.++++|+|.||+.+++|.||+|||
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~~~~~~~~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TG 285 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTG 285 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccccccCcCCCCceEECCcccceecCCeEEECCCCCccCCEEEECCc
Confidence 59999999999999999999999999999976543222222 12356667777776665679999999999999999999
Q ss_pred cccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCCcccccHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 037525 80 YKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTK 159 (182)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~ia~~l~g~~~lP~~~~m~~~~~ 159 (182)
|+++++||+..+.+.++++++.+||+++|++...|+|+|+|.+..+++|+++|+||+|+|++|+|+.+||++++|.++++
T Consensus 286 y~~~~pfL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~~~E~Qa~~~a~v~sG~~~LPs~~~m~~~~~ 365 (461)
T PLN02172 286 YKYHFPFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDIN 365 (461)
T ss_pred CCccccccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccCchhHHHHHHHHHHHHcCCCCCcCHHHHHHHHH
Confidence 99999999865556677888878999999997459999999998788999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcceecCCCCC
Q 037525 160 AFYSTLEASGTPKRYTHNMGDYQ 182 (182)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~ 182 (182)
++++.+++.|.++||+|.|++.|
T Consensus 366 ~~~~~~~~~g~~~r~~h~~~~~~ 388 (461)
T PLN02172 366 AWYASLEALGIPKRYTHKLGKIQ 388 (461)
T ss_pred HHHHHHHhcCCCCceeEEcCccH
Confidence 99999888999999999998644
No 2
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=1.2e-32 Score=239.02 Aligned_cols=166 Identities=40% Similarity=0.653 Sum_probs=114.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----------------------CCC-----------------
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----------------------KQP----------------- 41 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----------------------~~~----------------- 41 (182)
||+|||+|+||+|+|.+|++.|++|+++.|++.|..++ .+|
T Consensus 185 rVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~ 264 (531)
T PF00743_consen 185 RVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFD 264 (531)
T ss_dssp EEEEESSSHHHHHHHHHHTTTSCCEEEECC--------------------------------------------------
T ss_pred EEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 69999999999999999999999999999987653210 000
Q ss_pred --------C-------------------CCCeEEcceeEEeeCCCeEEEcCCcEE-ecCEEEEecccccCCCCCCCCCce
Q 037525 42 --------G-------------------FDNMWLHSMIESAHDNGAVVFRNGHTV-HADVILHCTGYKYHFPFLETNGIV 93 (182)
Q Consensus 42 --------~-------------------~~~i~~~~~v~~~~~~~~v~~~dg~~~-~~D~vi~atG~~~~~~~l~~~~~~ 93 (182)
. .++|..++.|+++++ ++|+|.||+++ ++|.||+||||+.++|||++. .+
T Consensus 265 ~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~-~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~-~~ 342 (531)
T PF00743_consen 265 HENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTE-NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDES-LI 342 (531)
T ss_dssp ----------------------------------EE-EEEE-S-SEEEETTSEEEEE-SEEEE---EE---TTB-TT-TT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc-cc
Confidence 0 013455677888877 59999999986 699999999999999999874 34
Q ss_pred ecCCCccccccccccCCCC-CCCEEEEeccCC-cccccHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 037525 94 TMDDNRVGPLYKHVFPPVL-APWLSFVGLPWK-VIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASG 169 (182)
Q Consensus 94 ~~~~~~~~~ly~~~~~~~~-~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~~~lP~~~~m~~~~~~~~~~~~~~~ 169 (182)
...++.+ +||+++|+++. .|+|+|+|.... ++.++++|+||+|+|++|+|+.+||++++|.++++++.+++.+++
T Consensus 343 ~~~~~~~-~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~a~v~sG~~~LPs~~~M~~~i~~~~~~~~~~~ 419 (531)
T PF00743_consen 343 KVDDNRV-RLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWAARVFSGRVKLPSKEEMMEEIEEEQEWRAKRF 419 (531)
T ss_dssp -S-SSSS-SEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHHHHHHTTSS----HHHHHHHHHHHHHHHHT--
T ss_pred ccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5555555 79999999863 499999999864 567899999999999999999999999999999998888877664
No 3
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=8.1e-25 Score=185.80 Aligned_cols=178 Identities=47% Similarity=0.771 Sum_probs=142.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCC-CCCeEEcceeEEeeCCCeEEEcCCcEEecCEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPG-FDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTG 79 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~-~~~i~~~~~v~~~~~~~~v~~~dg~~~~~D~vi~atG 79 (182)
+|+|||+|+||+|+|.+++..|++|+++.+ .........+. ..+++..+.|..+++++.+.+.++....+|.||+|||
T Consensus 188 ~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~~~~~~~~~~~D~ii~ctg 266 (448)
T KOG1399|consen 188 VVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHVEPPEILGENLWQVPSIKSFTEDGSVFEKGGPVERVDRIIFCTG 266 (448)
T ss_pred eEEEECCCccHHHHHHHHHHhccCcceeee-cccccccccceeecceEEccccccccCcceEEEcCceeEEeeeEEEeee
Confidence 599999999999999999999999999976 20000000110 1355555558888776445555666678999999999
Q ss_pred cccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCCcccccHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 037525 80 YKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTK 159 (182)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~ia~~l~g~~~lP~~~~m~~~~~ 159 (182)
|...+||++........++...++|+++|++.+.|++.++|.+...+.++.+|.|++|+++++.|+.+||+.++|..+..
T Consensus 267 y~y~fPfl~~~~~~~~~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~~lps~~~m~~d~~ 346 (448)
T KOG1399|consen 267 YKYKFPFLETLGLGTVRDNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRLKLPSKDQMLEDGQ 346 (448)
T ss_pred eEeecceeccCCceeeccCcccchheeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCCCcCCCHHHhhhhhh
Confidence 99999999875443445555558999999988778999999887668899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC-CcceecCC
Q 037525 160 AFYSTLEASGTP-KRYTHNMG 179 (182)
Q Consensus 160 ~~~~~~~~~~~~-~~~~~~~~ 179 (182)
+.++.+...+.+ +|+.|.++
T Consensus 347 ~~~~~~~~~~~~~~~~t~~~~ 367 (448)
T KOG1399|consen 347 EKYEKLDAVGLATGRHTHVPD 367 (448)
T ss_pred hhhhhhhhhcccccccccccc
Confidence 888888888887 88888865
No 4
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.59 E-value=7e-15 Score=123.40 Aligned_cols=141 Identities=18% Similarity=0.244 Sum_probs=99.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCC-------------eEEEEeccCCCCC-CC-C--------CCCC-CCeEEcceeEEee
Q 037525 1 VIILVGSSASAVDICRDLAGVAK-------------EVHLVSRSVADGT-YE-K--------QPGF-DNMWLHSMIESAH 56 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~-------------~V~l~~r~~~~~~-~~-~--------~~~~-~~i~~~~~v~~~~ 56 (182)
+|+|||||++|+|+|.+|++... +|+|+++.+.... +. . +.+. -++.++..|++++
T Consensus 157 ti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~ 236 (405)
T COG1252 157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVT 236 (405)
T ss_pred EEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEEC
Confidence 48999999999999999998543 7889888775421 10 0 1111 1456678899998
Q ss_pred CCCeEEEcCCcE-EecCEEEEecccccCCCCCCCCCceecC-CCccccccccccCCCCCCCEEEEeccCC-------ccc
Q 037525 57 DNGAVVFRNGHT-VHADVILHCTGYKYHFPFLETNGIVTMD-DNRVGPLYKHVFPPVLAPWLSFVGLPWK-------VIP 127 (182)
Q Consensus 57 ~~~~v~~~dg~~-~~~D~vi~atG~~~~~~~l~~~~~~~~~-~~~~~~ly~~~~~~~~~p~l~~iG~~~~-------~~~ 127 (182)
++ +|++.+|.. +++|.+|||+|.+++ +++.....++.+ .+++ -.-...-.++ +|++|.+|++.. +++
T Consensus 237 ~~-~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl-~V~~~L~~~~-~~~IFa~GD~A~~~~~~p~P~t 312 (405)
T COG1252 237 PD-GVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRL-VVNPTLQVPG-HPDIFAAGDCAAVIDPRPVPPT 312 (405)
T ss_pred CC-cEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCE-EeCCCcccCC-CCCeEEEeccccCCCCCCCCCh
Confidence 74 899999885 999999999999987 555541112322 2343 2233344456 799999999862 245
Q ss_pred ccHHHHHHHHHHHHHcCC
Q 037525 128 FPLCEYQSKWIAGVLSGQ 145 (182)
Q Consensus 128 ~~~~e~qa~~ia~~l~g~ 145 (182)
.+.+..|++++|+.|...
T Consensus 313 AQ~A~Qqg~~~a~ni~~~ 330 (405)
T COG1252 313 AQAAHQQGEYAAKNIKAR 330 (405)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 678899999999988644
No 5
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.50 E-value=4.9e-13 Score=113.89 Aligned_cols=139 Identities=14% Similarity=0.237 Sum_probs=96.0
Q ss_pred CEEEEcCCccHHHHHHHHhcc--------------CCeEEEEeccCCCC-CCC---------CCCCC-CCeEEcceeEEe
Q 037525 1 VIILVGSSASAVDICRDLAGV--------------AKEVHLVSRSVADG-TYE---------KQPGF-DNMWLHSMIESA 55 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~--------------a~~V~l~~r~~~~~-~~~---------~~~~~-~~i~~~~~v~~~ 55 (182)
+|+|||+|++|+|+|.+|++. ..+|+++++++... .++ .+... -++..+..|+++
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v 254 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEV 254 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEE
Confidence 489999999999999999863 46899999876431 110 01111 134456778888
Q ss_pred eCCCeEEEcCCcEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCC------cccc
Q 037525 56 HDNGAVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK------VIPF 128 (182)
Q Consensus 56 ~~~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~------~~~~ 128 (182)
.++ .++++||+++++|.+|||+|.+++ +++... .++.++ +.+ .....+-.++ .|++|.+|++.. ....
T Consensus 255 ~~~-~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~-~l~~~~~G~I-~Vd~~l~~~~-~~~IfAiGD~a~~~~~~~~~~~ 329 (424)
T PTZ00318 255 LDK-EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQL-KVDKTSRGRI-SVDDHLRVKP-IPNVFALGDCAANEERPLPTLA 329 (424)
T ss_pred eCC-EEEECCCCEEEccEEEEccCCCCc-chhhhc-CCcccCCCcE-EeCCCcccCC-CCCEEEEeccccCCCCCCCCch
Confidence 764 799999999999999999999987 565442 233332 333 2333333345 699999999874 1245
Q ss_pred cHHHHHHHHHHHHHcC
Q 037525 129 PLCEYQSKWIAGVLSG 144 (182)
Q Consensus 129 ~~~e~qa~~ia~~l~g 144 (182)
+.+..|++++|..|.+
T Consensus 330 ~~A~~qg~~~A~ni~~ 345 (424)
T PTZ00318 330 QVASQQGVYLAKEFNN 345 (424)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6788999999888754
No 6
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.46 E-value=8.8e-13 Score=112.75 Aligned_cols=140 Identities=17% Similarity=0.233 Sum_probs=99.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCCC-CeEEcceeEEeeCCCeEEEcCCcEE
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGFD-NMWLHSMIESAHDNGAVVFRNGHTV 69 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~~-~i~~~~~v~~~~~~~~v~~~dg~~~ 69 (182)
+|+|||+|++|+|+|..|++.+++|+++++++.+.. ++ .+...+ ++..+..|+++.+ ..+++.+|+.+
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~-~~v~~~~g~~~ 228 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING-NEVTFKSGKVE 228 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC-CEEEECCCCEE
Confidence 589999999999999999999999999998764321 11 011111 2344577888865 47888889889
Q ss_pred ecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-----------ccccHHHHHHHH
Q 037525 70 HADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-----------IPFPLCEYQSKW 137 (182)
Q Consensus 70 ~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~e~qa~~ 137 (182)
++|.|++|+|++|+.+++... ++.+++ +.+ .....+- ++ .|++|.+|++... .....+..||+.
T Consensus 229 ~~D~vl~a~G~~pn~~~l~~~-gl~~~~~G~i-~Vd~~~~-t~-~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~ 304 (438)
T PRK13512 229 HYDMIIEGVGTHPNSKFIESS-NIKLDDKGFI-PVNDKFE-TN-VPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASI 304 (438)
T ss_pred EeCEEEECcCCCcChHHHHhc-CcccCCCCcE-EECCCcc-cC-CCCEEEeeeeEEeeeccCCCceecccchHHHHHHHH
Confidence 999999999999998887653 344433 223 2323322 34 6999999998531 123457789999
Q ss_pred HHHHHcCC
Q 037525 138 IAGVLSGQ 145 (182)
Q Consensus 138 ia~~l~g~ 145 (182)
++..+.|.
T Consensus 305 ~a~ni~g~ 312 (438)
T PRK13512 305 VAEQIAGN 312 (438)
T ss_pred HHHHhcCC
Confidence 99999875
No 7
>PRK07846 mycothione reductase; Reviewed
Probab=99.45 E-value=2.7e-12 Score=110.15 Aligned_cols=142 Identities=18% Similarity=0.152 Sum_probs=99.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCCC--------CCCC-CCeEEcceeEEeeCC-Ce--EEEcCCc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYEK--------QPGF-DNMWLHSMIESAHDN-GA--VVFRNGH 67 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~~--------~~~~-~~i~~~~~v~~~~~~-~~--v~~~dg~ 67 (182)
+|+|||+|++|+|+|..|++.+.+|+++.|++... .++. +... -++..+..++++..+ ++ +.+.+|+
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~ 247 (451)
T PRK07846 168 SLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGS 247 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHhcCeEEEeCCEEEEEEEcCCEEEEEECCCc
Confidence 58999999999999999999999999999976542 1110 0011 123445677777532 23 5566788
Q ss_pred EEecCEEEEecccccCCCCCCC-CCceecCCC-ccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHcC
Q 037525 68 TVHADVILHCTGYKYHFPFLET-NGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLSG 144 (182)
Q Consensus 68 ~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~g 144 (182)
.+++|.||+|+|.+|+.+++.. ...+++++. .+ ....++- ++ .|++|.+|+.... ...+.+..|++.++..+.+
T Consensus 248 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i-~Vd~~~~-Ts-~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 248 TVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRV-VVDEYQR-TS-AEGVFALGDVSSPYQLKHVANHEARVVQHNLLH 324 (451)
T ss_pred EeecCEEEEEECCccCccccCchhcCceECCCCcE-eECCCcc-cC-CCCEEEEeecCCCccChhHHHHHHHHHHHHHcC
Confidence 8999999999999999988742 223444332 22 2222222 34 6999999998753 3457889999999999986
Q ss_pred C
Q 037525 145 Q 145 (182)
Q Consensus 145 ~ 145 (182)
.
T Consensus 325 ~ 325 (451)
T PRK07846 325 P 325 (451)
T ss_pred C
Confidence 4
No 8
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.43 E-value=3.6e-12 Score=109.35 Aligned_cols=142 Identities=18% Similarity=0.159 Sum_probs=96.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCCC---------CCCC-CCeEEcceeEEeeCC--C--eEEEcC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYEK---------QPGF-DNMWLHSMIESAHDN--G--AVVFRN 65 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~~---------~~~~-~~i~~~~~v~~~~~~--~--~v~~~d 65 (182)
+|+|||+|++|+|+|..|++.+++|++++|++... .++. +... -++..+..++++.++ + .+.+.+
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~ 247 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFED 247 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECC
Confidence 58999999999999999999999999999876432 1110 1111 123344567777532 2 356677
Q ss_pred C-cEEecCEEEEecccccCCCCCC-CCCceecCCCccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHHH
Q 037525 66 G-HTVHADVILHCTGYKYHFPFLE-TNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGVL 142 (182)
Q Consensus 66 g-~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l 142 (182)
| +.+++|.||+|+|++|+.+++. ....++.+........... .++ .|++|.+|++.. ....+.+..|++.++..+
T Consensus 248 g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~-~T~-~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i 325 (450)
T TIGR01421 248 GKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQ-NTN-VPGIYALGDVVGKVELTPVAIAAGRKLSERL 325 (450)
T ss_pred CcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCC-cCC-CCCEEEEEecCCCcccHHHHHHHHHHHHHHH
Confidence 8 4689999999999999988653 2223444332211222222 234 699999999764 345678899999999999
Q ss_pred cC
Q 037525 143 SG 144 (182)
Q Consensus 143 ~g 144 (182)
.|
T Consensus 326 ~~ 327 (450)
T TIGR01421 326 FN 327 (450)
T ss_pred hc
Confidence 85
No 9
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.42 E-value=1.5e-12 Score=109.11 Aligned_cols=140 Identities=16% Similarity=0.210 Sum_probs=97.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCC------------CCC-CeEEcceeEEeeCCC---eEEEc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQP------------GFD-NMWLHSMIESAHDNG---AVVFR 64 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~------------~~~-~i~~~~~v~~~~~~~---~v~~~ 64 (182)
+|+|||+|++|+|+|..|++.+.+|+++++++... ...++ ..+ ++.....|+++..++ .+.+.
T Consensus 143 ~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l-~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~ 221 (377)
T PRK04965 143 RVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL-ASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLD 221 (377)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc-chhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEc
Confidence 58999999999999999999999999999876431 11011 111 233456777776432 36778
Q ss_pred CCcEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCC--c---ccccHHHHHHHHHH
Q 037525 65 NGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK--V---IPFPLCEYQSKWIA 139 (182)
Q Consensus 65 dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~--~---~~~~~~e~qa~~ia 139 (182)
||+++++|.||+|+|+.++..++.. .++..+.+-..+-+.. ++ .|++|.+|++.. + +.+..+..|++.+|
T Consensus 222 ~g~~i~~D~vI~a~G~~p~~~l~~~-~gl~~~~gi~vd~~l~---ts-~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a 296 (377)
T PRK04965 222 SGRSIEVDAVIAAAGLRPNTALARR-AGLAVNRGIVVDSYLQ---TS-APDIYALGDCAEINGQVLPFLQPIQLSAMALA 296 (377)
T ss_pred CCcEEECCEEEECcCCCcchHHHHH-CCCCcCCCEEECCCcc---cC-CCCEEEeeecEeECCceeehHHHHHHHHHHHH
Confidence 8989999999999999998776543 2333333211122222 24 699999999863 1 23556789999999
Q ss_pred HHHcCCC
Q 037525 140 GVLSGQI 146 (182)
Q Consensus 140 ~~l~g~~ 146 (182)
+.|.|..
T Consensus 297 ~n~~g~~ 303 (377)
T PRK04965 297 KNLLGQN 303 (377)
T ss_pred HHhcCCC
Confidence 9999863
No 10
>PLN02507 glutathione reductase
Probab=99.42 E-value=7.3e-12 Score=108.82 Aligned_cols=142 Identities=19% Similarity=0.190 Sum_probs=98.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC-CCCC---------CCCCC-CCeEEcceeEEeeC-CCe--EEEcCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD-GTYE---------KQPGF-DNMWLHSMIESAHD-NGA--VVFRNG 66 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~-~~~~---------~~~~~-~~i~~~~~v~~~~~-~~~--v~~~dg 66 (182)
+|+|||+|++|+|+|..+++.+++|++++|++.. ..++ .+... -++..+..|+++.+ +++ +.+.+|
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g 284 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHG 284 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCC
Confidence 5899999999999999999999999999987643 1111 01111 13344567777753 223 455678
Q ss_pred cEEecCEEEEecccccCCCCCC-CCCceecCCC-ccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHc
Q 037525 67 HTVHADVILHCTGYKYHFPFLE-TNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLS 143 (182)
Q Consensus 67 ~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~ 143 (182)
+++++|.|++|+|++|+.+++. ...++++++. .+ ....++- ++ .|++|.+|++... ...+.+..|++.++..+.
T Consensus 285 ~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I-~Vd~~~~-Ts-~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~ 361 (499)
T PLN02507 285 EEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAV-KVDEYSR-TN-IPSIWAIGDVTNRINLTPVALMEGTCFAKTVF 361 (499)
T ss_pred cEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcE-ecCCCCc-CC-CCCEEEeeEcCCCCccHHHHHHHHHHHHHHHc
Confidence 8899999999999999988753 1223444432 23 2222222 24 6999999998743 346788999999999997
Q ss_pred CC
Q 037525 144 GQ 145 (182)
Q Consensus 144 g~ 145 (182)
|.
T Consensus 362 g~ 363 (499)
T PLN02507 362 GG 363 (499)
T ss_pred CC
Confidence 64
No 11
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.40 E-value=1.6e-12 Score=110.59 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=98.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC--CCC---------CCCCCC-CeEEcceeEEeeCCCe-EEEcCCc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG--TYE---------KQPGFD-NMWLHSMIESAHDNGA-VVFRNGH 67 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~--~~~---------~~~~~~-~i~~~~~v~~~~~~~~-v~~~dg~ 67 (182)
+|+|||+|++|+|+|..|++.+.+|+++.+++... .+. .+...+ ++..+..|.++.+++. +++.+|+
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~ 218 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGG 218 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCC
Confidence 58999999999999999999999999999876541 111 011111 2334567788865433 3677888
Q ss_pred EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCC-----------cccccHHHHHH
Q 037525 68 TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK-----------VIPFPLCEYQS 135 (182)
Q Consensus 68 ~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~-----------~~~~~~~e~qa 135 (182)
++++|.||+|+|++++.+++... ++..++ +.+ ....++- ++ .|++|.+|++.. .+....+..|+
T Consensus 219 ~i~~D~vi~a~G~~p~~~~l~~~-gl~~~~~G~i-~vd~~~~-t~-~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g 294 (427)
T TIGR03385 219 VYQADMVILATGIKPNSELAKDS-GLKLGETGAI-WVNEKFQ-TS-VPNIYAAGDVAESHNIITKKPAWVPLAWGANKMG 294 (427)
T ss_pred EEEeCEEEECCCccCCHHHHHhc-CcccCCCCCE-EECCCcE-eC-CCCEEEeeeeEEeeeccCCCceeeechHHHHHHH
Confidence 89999999999999998877542 333332 222 2222222 24 699999998863 12456889999
Q ss_pred HHHHHHHcCC
Q 037525 136 KWIAGVLSGQ 145 (182)
Q Consensus 136 ~~ia~~l~g~ 145 (182)
+.+|..|.|.
T Consensus 295 ~~~a~ni~g~ 304 (427)
T TIGR03385 295 RIAGENIAGN 304 (427)
T ss_pred HHHHHHhcCC
Confidence 9999999885
No 12
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.38 E-value=3.3e-12 Score=102.91 Aligned_cols=138 Identities=16% Similarity=0.121 Sum_probs=93.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCCeE--EcceeEEeeCCC---eEEEc---CC--
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDNMW--LHSMIESAHDNG---AVVFR---NG-- 66 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~i~--~~~~v~~~~~~~---~v~~~---dg-- 66 (182)
+|+|||+|++|+|+|.+|++.+++|++++|++.+.... .+....++. ....++++.+++ .+++. +|
T Consensus 143 ~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~ 222 (300)
T TIGR01292 143 EVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEE 222 (300)
T ss_pred EEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCce
Confidence 58999999999999999999999999999987543111 111111343 346677776533 24453 24
Q ss_pred cEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCC--cccccHHHHHHHHHHHHHc
Q 037525 67 HTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK--VIPFPLCEYQSKWIAGVLS 143 (182)
Q Consensus 67 ~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~ia~~l~ 143 (182)
.++++|.||+|||++++.+++... +..+. +.+ ..... +..+ .|++|.+|++.. ......+..|++.+|..+.
T Consensus 223 ~~i~~D~vi~a~G~~~~~~~l~~~--~~~~~~g~i-~v~~~-~~t~-~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 223 EELKVDGVFIAIGHEPNTELLKGL--LELDEGGYI-VTDEG-MRTS-VPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred EEEEccEEEEeeCCCCChHHHHHh--heecCCCcE-EECCC-CccC-CCCEEEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence 357899999999999998777643 23222 222 23333 2335 699999999874 3346677888888887765
No 13
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.38 E-value=1.5e-11 Score=105.55 Aligned_cols=143 Identities=16% Similarity=0.135 Sum_probs=98.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCCC--------CCCC-CCeEEcceeEEeeCC-Ce--EEEcCCc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYEK--------QPGF-DNMWLHSMIESAHDN-GA--VVFRNGH 67 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~~--------~~~~-~~i~~~~~v~~~~~~-~~--v~~~dg~ 67 (182)
+|+|||+|++|+|+|..|++.+++|+++++.+.+. .++. +... -++..+..|+++..+ ++ +.+.+|+
T Consensus 171 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~ 250 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGS 250 (452)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCC
Confidence 58999999999999999999999999999876531 1110 0011 123445667777532 23 4556788
Q ss_pred EEecCEEEEecccccCCCCCCC-CCceecCCCccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHcCC
Q 037525 68 TVHADVILHCTGYKYHFPFLET-NGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLSGQ 145 (182)
Q Consensus 68 ~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~g~ 145 (182)
++++|.|++|+|.+|+.+++.. ..++++++........++- ++ .|++|.+|++... ...+.+..|++.++..+.|.
T Consensus 251 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~-Ts-~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 251 TVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGR-TS-ARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred EEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcc-cC-CCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 8999999999999999888643 2234543332112222322 34 6999999998753 34568899999999999864
No 14
>PRK06116 glutathione reductase; Validated
Probab=99.37 E-value=1.7e-11 Score=105.14 Aligned_cols=143 Identities=17% Similarity=0.192 Sum_probs=98.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCC---------CCCCC-CCeEEcceeEEeeC--CC--eEEEcC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYE---------KQPGF-DNMWLHSMIESAHD--NG--AVVFRN 65 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~---------~~~~~-~~i~~~~~v~~~~~--~~--~v~~~d 65 (182)
+|+|||+|++|+|+|..|++.+++|++++|++.+. ..+ .+... -++..+..|+++.. ++ .+.+.+
T Consensus 169 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~ 248 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLED 248 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcC
Confidence 58999999999999999999999999999876431 111 01111 12344567777753 22 356678
Q ss_pred CcEEecCEEEEecccccCCCCCC-CCCceecCCCccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHHHc
Q 037525 66 GHTVHADVILHCTGYKYHFPFLE-TNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGVLS 143 (182)
Q Consensus 66 g~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l~ 143 (182)
|+++++|.||+|+|++|+.+++. ...++..++........++- .+ .|++|.+|++.. ......+..|++.+|..+.
T Consensus 249 g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~-Ts-~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 326 (450)
T PRK06116 249 GETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQN-TN-VPGIYAVGDVTGRVELTPVAIAAGRRLSERLF 326 (450)
T ss_pred CcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCC-cC-CCCEEEEeecCCCcCcHHHHHHHHHHHHHHHh
Confidence 88899999999999999988643 11234443322112222222 24 699999999864 3446788999999999998
Q ss_pred CC
Q 037525 144 GQ 145 (182)
Q Consensus 144 g~ 145 (182)
|.
T Consensus 327 g~ 328 (450)
T PRK06116 327 NN 328 (450)
T ss_pred CC
Confidence 74
No 15
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=9.9e-12 Score=101.56 Aligned_cols=120 Identities=19% Similarity=0.229 Sum_probs=85.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCCe--EEcceeEEeeCC--CeEEEcC--Cc--E
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDNM--WLHSMIESAHDN--GAVVFRN--GH--T 68 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~i--~~~~~v~~~~~~--~~v~~~d--g~--~ 68 (182)
+|+|||||+||+|.|..|++.+++|++++|++.++... .+...+++ ..+..|+++.++ .++++.+ |+ .
T Consensus 145 ~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~ 224 (305)
T COG0492 145 DVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKE 224 (305)
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEE
Confidence 58999999999999999999999999999999876421 12222234 456688888764 4788886 33 4
Q ss_pred EecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCC
Q 037525 69 VHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK 124 (182)
Q Consensus 69 ~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~ 124 (182)
+++|.+++++|+.|++.|+.... ...+++.+ ..-.. ..++ .|++|.+|+...
T Consensus 225 ~~~~gvf~~iG~~p~~~~~~~~~-~~~~~g~I-~v~~~-~~Ts-vpGifAaGDv~~ 276 (305)
T COG0492 225 LPVDGVFIAIGHLPNTELLKGLG-VLDENGYI-VVDEE-METS-VPGIFAAGDVAD 276 (305)
T ss_pred EEeceEEEecCCCCchHHHhhcc-ccCCCCcE-EcCCC-cccC-CCCEEEeEeecc
Confidence 68999999999999998876532 11122222 12222 3334 799999999863
No 16
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.35 E-value=2.9e-11 Score=104.75 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=96.3
Q ss_pred CEEEEcCCccHHHHHHHHhcc---CCeEEEEeccCCCC-CCC---------CCCCCC-CeEEcceeEEeeC--CC--eEE
Q 037525 1 VIILVGSSASAVDICRDLAGV---AKEVHLVSRSVADG-TYE---------KQPGFD-NMWLHSMIESAHD--NG--AVV 62 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~---a~~V~l~~r~~~~~-~~~---------~~~~~~-~i~~~~~v~~~~~--~~--~v~ 62 (182)
+|+|||+|+.|+|+|..++.. +.+|+++++.+... .++ .+...+ ++..+..++++.. ++ .+.
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~ 268 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVT 268 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEE
Confidence 589999999999999877654 78999999876532 111 011111 2344566777753 22 366
Q ss_pred EcCCcEEecCEEEEecccccCCCCCCC-CCceecCCC-ccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHH
Q 037525 63 FRNGHTVHADVILHCTGYKYHFPFLET-NGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIA 139 (182)
Q Consensus 63 ~~dg~~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia 139 (182)
+.+|+++++|.||+|+|.+|+.+++.- ..++++++. .+ ....++- ++ .|++|.+|++... ...+.+..|++.++
T Consensus 269 ~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I-~Vd~~l~-Ts-~~~IyA~GDv~~~~~l~~~A~~qG~~aa 345 (486)
T TIGR01423 269 FESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAI-QVDEFSR-TN-VPNIYAIGDVTDRVMLTPVAINEGAAFV 345 (486)
T ss_pred EcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCE-ecCCCCc-CC-CCCEEEeeecCCCcccHHHHHHHHHHHH
Confidence 678888999999999999999886542 123444332 22 2222222 24 6999999998753 45678899999999
Q ss_pred HHHcCC
Q 037525 140 GVLSGQ 145 (182)
Q Consensus 140 ~~l~g~ 145 (182)
..+.|.
T Consensus 346 ~ni~g~ 351 (486)
T TIGR01423 346 DTVFGN 351 (486)
T ss_pred HHHhCC
Confidence 999874
No 17
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.35 E-value=7e-12 Score=114.15 Aligned_cols=141 Identities=12% Similarity=0.097 Sum_probs=98.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC--CCC---------CCCCC-CeEEcceeEEeeCCC---eEEEcC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT--YEK---------QPGFD-NMWLHSMIESAHDNG---AVVFRN 65 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~--~~~---------~~~~~-~i~~~~~v~~~~~~~---~v~~~d 65 (182)
+|+|||+|++|+|+|..|++.+.+|+++++.+.+.. .+. +...+ ++..+..++++.+++ +|++.|
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~d 221 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKD 221 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECC
Confidence 589999999999999999999999999998765411 100 11111 244456677775432 578899
Q ss_pred CcEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCC--c---ccccHHHHHHHHHHH
Q 037525 66 GHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK--V---IPFPLCEYQSKWIAG 140 (182)
Q Consensus 66 g~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~--~---~~~~~~e~qa~~ia~ 140 (182)
|+++++|.||+|+|++|+.+++.. .++..+++-+.+.|.. ++ .|++|.+|++.. . ..+..+..||+.+|.
T Consensus 222 G~~i~~D~Vi~a~G~~Pn~~la~~-~gl~~~ggI~Vd~~~~---Ts-~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ 296 (785)
T TIGR02374 222 GSSLEADLIVMAAGIRPNDELAVS-AGIKVNRGIIVNDSMQ---TS-DPDIYAVGECAEHNGRVYGLVAPLYEQAKVLAD 296 (785)
T ss_pred CCEEEcCEEEECCCCCcCcHHHHh-cCCccCCCEEECCCcc---cC-CCCEEEeeecceeCCcccccHHHHHHHHHHHHH
Confidence 999999999999999999876543 2344442222223333 24 699999999863 1 124457799999999
Q ss_pred HHcCCC
Q 037525 141 VLSGQI 146 (182)
Q Consensus 141 ~l~g~~ 146 (182)
.|.|..
T Consensus 297 ni~g~~ 302 (785)
T TIGR02374 297 HICGVE 302 (785)
T ss_pred HhcCCC
Confidence 999865
No 18
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.34 E-value=2.9e-11 Score=103.88 Aligned_cols=143 Identities=14% Similarity=0.112 Sum_probs=97.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCC-CeE--EEcCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDN-GAV--VFRNG 66 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~-~~v--~~~dg 66 (182)
+|+|||+|++|+|+|..|++.+.+|++++|.+.+.. .+ .+... -++..+..|+++.++ +++ .+.+|
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~g 253 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDG 253 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeC
Confidence 589999999999999999999999999998765321 10 01111 134445677777642 233 44555
Q ss_pred ---cEEecCEEEEecccccCCCCCC-CCCceecCCCccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHH
Q 037525 67 ---HTVHADVILHCTGYKYHFPFLE-TNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGV 141 (182)
Q Consensus 67 ---~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~ 141 (182)
+++++|.||+|+|.+|+.+++. ...++..+.+.+ ....++- ++ .|++|.+|++.. ......+..|++.+|..
T Consensus 254 g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i-~vd~~~~-t~-~~~VyAiGD~~~~~~~~~~A~~~g~~aa~n 330 (462)
T PRK06416 254 GKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFI-EVDEQLR-TN-VPNIYAIGDIVGGPMLAHKASAEGIIAAEA 330 (462)
T ss_pred CeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEE-eECCCCc-cC-CCCEEEeeecCCCcchHHHHHHHHHHHHHH
Confidence 5689999999999999988763 122344443323 2222222 34 699999999864 33467889999999999
Q ss_pred HcCCC
Q 037525 142 LSGQI 146 (182)
Q Consensus 142 l~g~~ 146 (182)
+.|..
T Consensus 331 i~~~~ 335 (462)
T PRK06416 331 IAGNP 335 (462)
T ss_pred HcCCC
Confidence 98753
No 19
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.34 E-value=2.1e-11 Score=105.98 Aligned_cols=142 Identities=18% Similarity=0.087 Sum_probs=95.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC---------CCCCC-CeEEcceeEEeeCC-C--eEEEcCCc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---------QPGFD-NMWLHSMIESAHDN-G--AVVFRNGH 67 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~---------~~~~~-~i~~~~~v~~~~~~-~--~v~~~dg~ 67 (182)
+|+|||+|++|+|+|..|++.+++|+++.+...+..++. +...+ ++..+..++++.+. + .+.+.+|+
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~ 263 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGT 263 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCC
Confidence 589999999999999999999999999987532221110 11111 23334455555421 1 46677888
Q ss_pred EEecCEEEEecccccCCCCCCC-CCceecCCCccccccccccCCCCCCCEEEEeccCC--cccccHHHHHHHHHHHHHcC
Q 037525 68 TVHADVILHCTGYKYHFPFLET-NGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK--VIPFPLCEYQSKWIAGVLSG 144 (182)
Q Consensus 68 ~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~ia~~l~g 144 (182)
++++|.||+|+|++|+.+++.. ..+++++.......-.. .++ .|++|.+|++.. ....+.+..|++.++..+.|
T Consensus 264 ~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts-~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 264 TELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTN-IPNIFAVGDVVEGRPELTPVAIKAGILLARRLFK 340 (499)
T ss_pred EEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCC-CCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhC
Confidence 8999999999999999888742 23344443221011111 234 699999999763 23567889999999999976
Q ss_pred C
Q 037525 145 Q 145 (182)
Q Consensus 145 ~ 145 (182)
.
T Consensus 341 ~ 341 (499)
T PTZ00052 341 Q 341 (499)
T ss_pred C
Confidence 4
No 20
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.34 E-value=3.8e-11 Score=103.47 Aligned_cols=142 Identities=17% Similarity=0.107 Sum_probs=97.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCCC-CeEEcceeEEeeC-CCe--EEEcCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGFD-NMWLHSMIESAHD-NGA--VVFRNG 66 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~~-~i~~~~~v~~~~~-~~~--v~~~dg 66 (182)
+|+|||+|++|+|+|..|++.+++|+++++++.... .+ .+...+ ++.....++++.. +++ +.+.+|
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g 258 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDG 258 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCC
Confidence 589999999999999999999999999998764321 11 011111 2334556777742 123 455688
Q ss_pred cEEecCEEEEecccccCCCCCC-CCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHc
Q 037525 67 HTVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLS 143 (182)
Q Consensus 67 ~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~ 143 (182)
+++++|.||+|+|++|+.+.+. ...+++++. +.+ ....++- .+ .|++|.+|+.... .....+..|++.++..+.
T Consensus 259 ~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i-~Vd~~~~-Ts-~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~ 335 (466)
T PRK07845 259 RTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHI-TVDRVSR-TS-VPGIYAAGDCTGVLPLASVAAMQGRIAMYHAL 335 (466)
T ss_pred cEEEecEEEEeecCCcCCCCCCchhhCceECCCCcE-eECCCcc-cC-CCCEEEEeeccCCccchhHHHHHHHHHHHHHc
Confidence 8899999999999999987642 112344433 223 2222222 24 6999999998743 446788999999999988
Q ss_pred CC
Q 037525 144 GQ 145 (182)
Q Consensus 144 g~ 145 (182)
|.
T Consensus 336 g~ 337 (466)
T PRK07845 336 GE 337 (466)
T ss_pred CC
Confidence 75
No 21
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.33 E-value=5.6e-11 Score=101.88 Aligned_cols=142 Identities=19% Similarity=0.210 Sum_probs=97.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCC-C--eEEEcCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDN-G--AVVFRNG 66 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~-~--~v~~~dg 66 (182)
+|+|||+|.+|+|+|..+++.+.+|+++++++.... ++ .+... -++..+..+.++.++ + .+.+.+|
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g 247 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHG 247 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCC
Confidence 589999999999999999999999999998765311 10 01111 133445567777531 2 3556688
Q ss_pred cEEecCEEEEecccccCCCCCC-CCCceecCCC-ccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHc
Q 037525 67 HTVHADVILHCTGYKYHFPFLE-TNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLS 143 (182)
Q Consensus 67 ~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~ 143 (182)
+.+++|.||+|+|+.|+.+.+. ...+++.++. .+ ....++ .++ .|++|.+|++... ...+.+..|++.++..+.
T Consensus 248 ~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i-~vd~~~-~Ts-~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~ 324 (446)
T TIGR01424 248 EEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAI-AVDEYS-RTS-IPSIYAVGDVTDRINLTPVAIMEATCFANTEF 324 (446)
T ss_pred cEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcE-EeCCCC-ccC-CCCEEEeeccCCCccchhHHHHHHHHHHHHHh
Confidence 8899999999999999987642 1123444332 22 222222 224 6999999998743 345788999999999988
Q ss_pred CC
Q 037525 144 GQ 145 (182)
Q Consensus 144 g~ 145 (182)
|.
T Consensus 325 ~~ 326 (446)
T TIGR01424 325 GN 326 (446)
T ss_pred cC
Confidence 73
No 22
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.33 E-value=7.5e-12 Score=105.67 Aligned_cols=141 Identities=13% Similarity=0.146 Sum_probs=97.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC--CCC-C--------CCCCC-CeEEcceeEEeeCCC--eEEEcCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG--TYE-K--------QPGFD-NMWLHSMIESAHDNG--AVVFRNG 66 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~--~~~-~--------~~~~~-~i~~~~~v~~~~~~~--~v~~~dg 66 (182)
+|+|||+|.+|+|+|..|++.+.+|+++++++.+. ... . +...+ ++..+..|+++.+++ .+.+.||
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g 225 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSG 225 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCC
Confidence 58999999999999999999999999999876531 110 0 00111 234456777776432 3567789
Q ss_pred cEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCC-----c-----ccccHHHHHHH
Q 037525 67 HTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-----V-----IPFPLCEYQSK 136 (182)
Q Consensus 67 ~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-----~-----~~~~~~e~qa~ 136 (182)
+++++|.||+|+|..++..++.. .++..++ .+ ....++- ++ .|++|.+|++.. + ..++.+..|++
T Consensus 226 ~~i~aD~Vv~a~G~~pn~~l~~~-~gl~~~~-gi-~vd~~~~-ts-~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~ 300 (396)
T PRK09754 226 ETLQADVVIYGIGISANDQLARE-ANLDTAN-GI-VIDEACR-TC-DPAIFAGGDVAITRLDNGALHRCESWENANNQAQ 300 (396)
T ss_pred CEEECCEEEECCCCChhhHHHHh-cCCCcCC-CE-EECCCCc-cC-CCCEEEccceEeeeCCCCCEEEECcHHHHHHHHH
Confidence 88999999999999998766543 2333332 22 2222222 24 699999999752 1 13578999999
Q ss_pred HHHHHHcCCC
Q 037525 137 WIAGVLSGQI 146 (182)
Q Consensus 137 ~ia~~l~g~~ 146 (182)
.+|..+.|..
T Consensus 301 ~aa~ni~g~~ 310 (396)
T PRK09754 301 IAAAAMLGLP 310 (396)
T ss_pred HHHHHhcCCC
Confidence 9999998863
No 23
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.33 E-value=4.7e-11 Score=102.56 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=96.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeC-CCe--EEEcCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHD-NGA--VVFRNG 66 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~-~~~--v~~~dg 66 (182)
+|+|||+|++|+|+|..+++.+.+|+++++++.+.. ++ .+... -++.....++++.. +++ +++.+|
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g 256 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSG 256 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCC
Confidence 589999999999999999999999999998765321 11 01111 12334566777752 223 455678
Q ss_pred cEEecCEEEEecccccCCCCCC-CCCceecCCC-ccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHHHc
Q 037525 67 HTVHADVILHCTGYKYHFPFLE-TNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGVLS 143 (182)
Q Consensus 67 ~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l~ 143 (182)
+++++|.||+|+|.+|+.+.+. ...++..++. .+ ..-.++- .+ .|++|.+|+... ......+..|++.+|..+.
T Consensus 257 ~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i-~vd~~~~-t~-~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 257 KKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQL-KVNENYQ-TA-VPHIYAVGDVIGFPSLASASMDQGRIAAQHAV 333 (461)
T ss_pred CEEEeCEEEEeecCCccccCCCchhhCcEecCCCcE-eeCCCcc-cC-CCCEEEeeecCCCcccHhHHHHHHHHHHHHHc
Confidence 8899999999999999987642 1123344322 22 2222222 24 699999999864 3345688999999999998
Q ss_pred CC
Q 037525 144 GQ 145 (182)
Q Consensus 144 g~ 145 (182)
|.
T Consensus 334 g~ 335 (461)
T PRK05249 334 GE 335 (461)
T ss_pred CC
Confidence 76
No 24
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.32 E-value=6e-11 Score=102.20 Aligned_cols=143 Identities=17% Similarity=0.202 Sum_probs=96.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCCC-e--EEEc--
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDNG-A--VVFR-- 64 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~~-~--v~~~-- 64 (182)
+|+|||+|++|+|+|..|++.+.+|+++.+.+.... .+ .+... -++..+..|+++.+++ . +.+.
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~ 253 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKK 253 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEec
Confidence 589999999999999999999999999998764311 10 01111 1344456777876432 2 4454
Q ss_pred CCc--EEecCEEEEecccccCCCCCC-CCCceecCCC-ccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHH
Q 037525 65 NGH--TVHADVILHCTGYKYHFPFLE-TNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIA 139 (182)
Q Consensus 65 dg~--~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia 139 (182)
||+ ++++|.||+|+|++|+.+.+. ...++.+++. .+ ....++- .+ .|++|.+|++.. ......+..|++.+|
T Consensus 254 ~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i-~vd~~~~-Ts-~p~IyAiGD~~~~~~l~~~A~~~g~~aa 330 (466)
T PRK07818 254 DGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAI-AIDDYMR-TN-VPHIYAIGDVTAKLQLAHVAEAQGVVAA 330 (466)
T ss_pred CCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcE-eeCCCcc-cC-CCCEEEEeecCCCcccHhHHHHHHHHHH
Confidence 664 579999999999999987642 1123343322 23 2222222 24 699999999864 345678999999999
Q ss_pred HHHcCCC
Q 037525 140 GVLSGQI 146 (182)
Q Consensus 140 ~~l~g~~ 146 (182)
..+.|..
T Consensus 331 ~~i~g~~ 337 (466)
T PRK07818 331 ETIAGAE 337 (466)
T ss_pred HHHcCCC
Confidence 9998753
No 25
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.30 E-value=6.8e-11 Score=102.41 Aligned_cols=141 Identities=17% Similarity=0.186 Sum_probs=93.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC---------CCCCCC-CeEEcceeEEeeC-CC--eEEEcCCc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE---------KQPGFD-NMWLHSMIESAHD-NG--AVVFRNGH 67 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~---------~~~~~~-~i~~~~~v~~~~~-~~--~v~~~dg~ 67 (182)
+|+|||+|++|+|+|..|++.+++|+++.|......++ .+...+ ++..+..++++.+ ++ .+++.+|+
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~ 261 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDST 261 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCC
Confidence 58999999999999999999999999998742221111 011111 2333445555542 12 35566653
Q ss_pred ---EEecCEEEEecccccCCCCCCC-CCceecCC--Ccc-ccccccccCCCCCCCEEEEeccCC--cccccHHHHHHHHH
Q 037525 68 ---TVHADVILHCTGYKYHFPFLET-NGIVTMDD--NRV-GPLYKHVFPPVLAPWLSFVGLPWK--VIPFPLCEYQSKWI 138 (182)
Q Consensus 68 ---~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~--~~~-~~ly~~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~i 138 (182)
++++|.||+|+|..|+.+++.. ..++++++ +.+ ..-|.. .+ .|++|.+|++.. ....+.+..|++.+
T Consensus 262 ~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~---Ts-~p~IyA~GDv~~~~~~l~~~A~~~g~~a 337 (484)
T TIGR01438 262 NGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQ---TN-VPYIYAVGDILEDKQELTPVAIQAGRLL 337 (484)
T ss_pred cceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcc---cC-CCCEEEEEEecCCCccchHHHHHHHHHH
Confidence 6899999999999999887542 22344432 222 122222 34 699999999763 33467889999999
Q ss_pred HHHHcCC
Q 037525 139 AGVLSGQ 145 (182)
Q Consensus 139 a~~l~g~ 145 (182)
+..+.+.
T Consensus 338 a~~i~~~ 344 (484)
T TIGR01438 338 AQRLFSG 344 (484)
T ss_pred HHHHhcC
Confidence 9999863
No 26
>PRK10262 thioredoxin reductase; Provisional
Probab=99.29 E-value=7.6e-11 Score=96.74 Aligned_cols=139 Identities=16% Similarity=0.185 Sum_probs=90.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCC--------CCCCCCCCeE--EcceeEEeeCCC----eEEEcCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTY--------EKQPGFDNMW--LHSMIESAHDNG----AVVFRNG 66 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~--------~~~~~~~~i~--~~~~v~~~~~~~----~v~~~dg 66 (182)
+|+|||+|++|+|+|..|++.+++|++++|++.+... +.+.. .+|. .+..++++.+++ +|++.++
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~~~~~l~~-~gV~i~~~~~v~~v~~~~~~~~~v~~~~~ 226 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVEN-GNIILHTNRTLEEVTGDQMGVTGVRLRDT 226 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHHHHhhccC-CCeEEEeCCEEEEEEcCCccEEEEEEEEc
Confidence 5899999999999999999999999999998754211 11111 2333 456777886542 4666543
Q ss_pred ------cEEecCEEEEecccccCCCCCCCCCceecCCCcccccccc----ccCCCCCCCEEEEeccCCcc------cccH
Q 037525 67 ------HTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKH----VFPPVLAPWLSFVGLPWKVI------PFPL 130 (182)
Q Consensus 67 ------~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~----~~~~~~~p~l~~iG~~~~~~------~~~~ 130 (182)
+++++|.||+++|++|+..++... +..+++.+ ..-.+ ...++ .|++|.+|++.... .+..
T Consensus 227 ~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~--l~~~~g~i-~vd~~~~~~~~~t~-~~~VyA~GD~~~~~~~~~~~A~~~ 302 (321)
T PRK10262 227 QNSDNIESLDVAGLFVAIGHSPNTAIFEGQ--LELENGYI-KVQSGIHGNATQTS-IPGVFAAGDVMDHIYRQAITSAGT 302 (321)
T ss_pred CCCCeEEEEECCEEEEEeCCccChhHhhcc--ccccCCEE-EECCCCcccccccC-CCCEEECeeccCCCcceEEEEehh
Confidence 257999999999999998765532 22222222 11110 12335 69999999986321 1334
Q ss_pred HHHHHHHHHHHHcC
Q 037525 131 CEYQSKWIAGVLSG 144 (182)
Q Consensus 131 ~e~qa~~ia~~l~g 144 (182)
.-..|.++.+++.+
T Consensus 303 g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 303 GCMAALDAERYLDG 316 (321)
T ss_pred HHHHHHHHHHHHHh
Confidence 45667777777754
No 27
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.27 E-value=3.9e-11 Score=103.15 Aligned_cols=140 Identities=14% Similarity=0.079 Sum_probs=85.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCC-eEEEEeccCCCCCCCC------CCCC-CCeEEcceeEEeeCCC----eEEEc----
Q 037525 1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSVADGTYEK------QPGF-DNMWLHSMIESAHDNG----AVVFR---- 64 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~~~~~~~~------~~~~-~~i~~~~~v~~~~~~~----~v~~~---- 64 (182)
+|+|||+|++|+|+|..+.+.+. +|++++|+....+... +... -++.....+.++.+++ +|++.
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~ 354 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMEL 354 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEe
Confidence 58999999999999999998754 8999998754322110 0000 0233345556664322 25542
Q ss_pred -------------CC--cEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-cc
Q 037525 65 -------------NG--HTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IP 127 (182)
Q Consensus 65 -------------dg--~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~ 127 (182)
+| +++++|.||+|+|++++..++.....+.++. +.+ ........++ .|++|.+|+...+ ..
T Consensus 355 ~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i-~vd~~~~~Ts-~~~VfA~GD~~~~~~~ 432 (457)
T PRK11749 355 GEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTI-IADDETGRTS-LPGVFAGGDIVTGAAT 432 (457)
T ss_pred cCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCE-EeCCCCCccC-CCCEEEeCCcCCCchH
Confidence 22 3579999999999999966654322233332 222 2222122334 6999999998743 23
Q ss_pred ccHHHHHHHHHHHHH
Q 037525 128 FPLCEYQSKWIAGVL 142 (182)
Q Consensus 128 ~~~~e~qa~~ia~~l 142 (182)
...+..|++.+|..+
T Consensus 433 ~~~A~~~G~~aA~~I 447 (457)
T PRK11749 433 VVWAVGDGKDAAEAI 447 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666777666554
No 28
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.27 E-value=1.3e-10 Score=99.49 Aligned_cols=141 Identities=17% Similarity=0.200 Sum_probs=100.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCCC---eEEEcCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDNG---AVVFRNG 66 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~~---~v~~~dg 66 (182)
+++|||||..|+|+|..+++.+.+|+++.|.+.+.. ++ .+... -++..+..++++..++ .+.+++|
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g 254 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDG 254 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecC
Confidence 479999999999999999999999999999876521 11 01110 1234456666665422 3667777
Q ss_pred c--EEecCEEEEecccccCCCCCCC-CCceecCCC-ccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHH
Q 037525 67 H--TVHADVILHCTGYKYHFPFLET-NGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGV 141 (182)
Q Consensus 67 ~--~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~ 141 (182)
+ ++++|.|++|+|-+|+++-|.- ..++++++. .+ ... ..+.++ .|++|.+|+...+ ...+.+..|++.++..
T Consensus 255 ~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I-~VD-~~~~Tn-vp~IyA~GDV~~~~~Lah~A~~eg~iaa~~ 331 (454)
T COG1249 255 EGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFI-KVD-DQMTTN-VPGIYAIGDVIGGPMLAHVAMAEGRIAAEN 331 (454)
T ss_pred CCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCE-EeC-CccccC-CCCEEEeeccCCCcccHhHHHHHHHHHHHH
Confidence 6 6789999999999999885432 234565553 33 233 223334 6999999999543 4568899999999999
Q ss_pred HcC
Q 037525 142 LSG 144 (182)
Q Consensus 142 l~g 144 (182)
+.|
T Consensus 332 i~g 334 (454)
T COG1249 332 IAG 334 (454)
T ss_pred HhC
Confidence 987
No 29
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.26 E-value=1.9e-10 Score=99.19 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=95.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCC-CeE--EEc--
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDN-GAV--VFR-- 64 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~-~~v--~~~-- 64 (182)
+|+|||+|++|+|+|..+++.+++|+++++.+.... .+ .+... -++..+..++++.++ +++ .+.
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~ 255 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPA 255 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEc
Confidence 589999999999999999999999999998764311 10 01111 134445677777642 233 332
Q ss_pred -CC--cEEecCEEEEecccccCCCCCCCC-CceecCCCcc-ccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHH
Q 037525 65 -NG--HTVHADVILHCTGYKYHFPFLETN-GIVTMDDNRV-GPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWI 138 (182)
Q Consensus 65 -dg--~~~~~D~vi~atG~~~~~~~l~~~-~~~~~~~~~~-~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~i 138 (182)
+| +.+++|.||+|+|++|+.+.+..+ ..+..++..+ ...|.. ++ .|++|.+|++... ...+.+..|++.+
T Consensus 256 ~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~---Ts-~~~IyA~GD~~~~~~la~~A~~~g~~a 331 (466)
T PRK06115 256 AGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHR---TS-VPGVWVIGDVTSGPMLAHKAEDEAVAC 331 (466)
T ss_pred CCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCee---cC-CCCEEEeeecCCCcccHHHHHHHHHHH
Confidence 23 468999999999999998765321 2233332222 122222 34 6999999998753 3467889999999
Q ss_pred HHHHcCCC
Q 037525 139 AGVLSGQI 146 (182)
Q Consensus 139 a~~l~g~~ 146 (182)
+..+.|..
T Consensus 332 a~~i~~~~ 339 (466)
T PRK06115 332 IERIAGKA 339 (466)
T ss_pred HHHHcCCC
Confidence 99998763
No 30
>PRK06370 mercuric reductase; Validated
Probab=99.26 E-value=1.9e-10 Score=98.95 Aligned_cols=143 Identities=11% Similarity=0.025 Sum_probs=94.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCC-Ce--EEEc--
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDN-GA--VVFR-- 64 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~-~~--v~~~-- 64 (182)
+|+|||+|++|+|+|..|++.+++|+++++++.+.. .+ .+... -++..+..+.++.++ ++ +.+.
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~ 252 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCN 252 (463)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeC
Confidence 589999999999999999999999999998765321 00 01111 133445677777642 22 3332
Q ss_pred C-CcEEecCEEEEecccccCCCCCC-CCCceecCCCccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHH
Q 037525 65 N-GHTVHADVILHCTGYKYHFPFLE-TNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGV 141 (182)
Q Consensus 65 d-g~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~ 141 (182)
+ ++++++|.||+|+|.+|+.+.+. ...++..++........++- .+ .|++|.+|++... .....+..|++.+|..
T Consensus 253 ~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~-t~-~~~IyAiGD~~~~~~~~~~A~~~g~~aa~n 330 (463)
T PRK06370 253 GGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLR-TT-NPGIYAAGDCNGRGAFTHTAYNDARIVAAN 330 (463)
T ss_pred CCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCc-CC-CCCEEEeeecCCCcccHHHHHHHHHHHHHH
Confidence 3 34689999999999999987442 11234443322112222222 24 6999999998743 2346788999999999
Q ss_pred HcCC
Q 037525 142 LSGQ 145 (182)
Q Consensus 142 l~g~ 145 (182)
+.+.
T Consensus 331 i~~~ 334 (463)
T PRK06370 331 LLDG 334 (463)
T ss_pred HhCC
Confidence 9864
No 31
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.26 E-value=3.6e-11 Score=102.73 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=95.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC--CCC---------CCCCC-CeEEcceeEEeeCCCeE--EEcCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT--YEK---------QPGFD-NMWLHSMIESAHDNGAV--VFRNG 66 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~--~~~---------~~~~~-~i~~~~~v~~~~~~~~v--~~~dg 66 (182)
+|+|||+|++|+|+|..+.+.+++|+++.+++.... ++. +...+ ++.....|+++.+++.+ ...++
T Consensus 151 ~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~ 230 (444)
T PRK09564 151 NIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDK 230 (444)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCC
Confidence 589999999999999999999999999988764311 110 00111 34445677787643322 22345
Q ss_pred cEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCC-----------cccccHHHHH
Q 037525 67 HTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK-----------VIPFPLCEYQ 134 (182)
Q Consensus 67 ~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~-----------~~~~~~~e~q 134 (182)
.++++|.+|+|+|+.++.+++... +++.++ +.+ ....++- .+ .|++|.+|++.. ......+..|
T Consensus 231 ~~i~~d~vi~a~G~~p~~~~l~~~-gl~~~~~g~i-~vd~~~~-t~-~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~q 306 (444)
T PRK09564 231 GEYEADVVIVATGVKPNTEFLEDT-GLKTLKNGAI-IVDEYGE-TS-IENIYAAGDCATIYNIVSNKNVYVPLATTANKL 306 (444)
T ss_pred CEEEcCEEEECcCCCcCHHHHHhc-CccccCCCCE-EECCCcc-cC-CCCEEEeeeEEEEEeccCCCeeeccchHHHHHH
Confidence 578999999999999988777653 333322 223 2222222 24 699999999863 1235688999
Q ss_pred HHHHHHHHcCCC
Q 037525 135 SKWIAGVLSGQI 146 (182)
Q Consensus 135 a~~ia~~l~g~~ 146 (182)
++.+|..|.|..
T Consensus 307 g~~~a~ni~g~~ 318 (444)
T PRK09564 307 GRMVGENLAGRH 318 (444)
T ss_pred HHHHHHHhcCCC
Confidence 999999998853
No 32
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.25 E-value=5e-11 Score=109.11 Aligned_cols=142 Identities=11% Similarity=0.060 Sum_probs=98.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC--CC---------CCCCCC-CeEEcceeEEeeCC-----CeEEE
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT--YE---------KQPGFD-NMWLHSMIESAHDN-----GAVVF 63 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~--~~---------~~~~~~-~i~~~~~v~~~~~~-----~~v~~ 63 (182)
+++|||+|.+|+|+|..|++.+.+|+++++.+.+.. ++ .+...+ ++.....++++.++ ..+.+
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~ 226 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRF 226 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEE
Confidence 489999999999999999999999999998765321 10 011111 23445667777532 14778
Q ss_pred cCCcEEecCEEEEecccccCCCCCCCCCceecCCC-ccccccccccCCCCCCCEEEEeccCCc-----ccccHHHHHHHH
Q 037525 64 RNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKV-----IPFPLCEYQSKW 137 (182)
Q Consensus 64 ~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~-----~~~~~~e~qa~~ 137 (182)
.||+++++|.||+|+|.+|+..++.. .++++++. .+ ....++.. + .|++|.+|++... .....+..||+.
T Consensus 227 ~dG~~i~~D~Vv~A~G~rPn~~L~~~-~Gl~~~~~G~I-~VD~~l~T-s-~p~IYAiGD~a~~~~~~~gl~~~a~~~a~v 302 (847)
T PRK14989 227 ADGSELEVDFIVFSTGIRPQDKLATQ-CGLAVAPRGGI-VINDSCQT-S-DPDIYAIGECASWNNRVFGLVAPGYKMAQV 302 (847)
T ss_pred CCCCEEEcCEEEECCCcccCchHHhh-cCccCCCCCcE-EECCCCcC-C-CCCEEEeecceeEcCcccccHHHHHHHHHH
Confidence 89999999999999999999876543 33444332 22 22223222 4 6999999998631 234567889999
Q ss_pred HHHHHcCCC
Q 037525 138 IAGVLSGQI 146 (182)
Q Consensus 138 ia~~l~g~~ 146 (182)
+|..|.|..
T Consensus 303 aa~~i~g~~ 311 (847)
T PRK14989 303 AVDHLLGSE 311 (847)
T ss_pred HHHHhcCCC
Confidence 999999864
No 33
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.24 E-value=2.3e-10 Score=98.47 Aligned_cols=142 Identities=16% Similarity=0.108 Sum_probs=94.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCC-C--eEEEcC-
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDN-G--AVVFRN- 65 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~-~--~v~~~d- 65 (182)
+|+|||+|.+|+|+|..|++.+.+|+++++++.... .+ .+... -++..+..|+++..+ + .+.+.+
T Consensus 168 ~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~ 247 (463)
T TIGR02053 168 SLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKP 247 (463)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeC
Confidence 589999999999999999999999999998764321 10 01111 123445667777532 2 234432
Q ss_pred --CcEEecCEEEEecccccCCCCCC-CCCceecCCC-ccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHH
Q 037525 66 --GHTVHADVILHCTGYKYHFPFLE-TNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAG 140 (182)
Q Consensus 66 --g~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~ 140 (182)
++++++|.||+|+|.+|+.+.+. ....++.++. .+ ....++- .+ .|++|.+|++... .....+..|++.+|.
T Consensus 248 ~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i-~vd~~~~-Ts-~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ 324 (463)
T TIGR02053 248 GGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGI-LVDETLR-TS-NPGIYAAGDVTGGLQLEYVAAKEGVVAAE 324 (463)
T ss_pred CCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcE-eECCCcc-CC-CCCEEEeeecCCCcccHhHHHHHHHHHHH
Confidence 34689999999999999987432 1123343322 22 2222222 24 6999999998753 345788999999999
Q ss_pred HHcCC
Q 037525 141 VLSGQ 145 (182)
Q Consensus 141 ~l~g~ 145 (182)
.+.+.
T Consensus 325 ni~~~ 329 (463)
T TIGR02053 325 NALGG 329 (463)
T ss_pred HhcCC
Confidence 99875
No 34
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.24 E-value=1.7e-10 Score=99.13 Aligned_cols=143 Identities=16% Similarity=0.139 Sum_probs=95.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCCCCeEEcceeEEeeCCC--eEEE--cCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGFDNMWLHSMIESAHDNG--AVVF--RNG 66 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~~~i~~~~~v~~~~~~~--~v~~--~dg 66 (182)
+|+|||+|++|+|+|..|++.+.+|++++|++.... ++ .+...-++..+..+.++.+++ .+++ .+|
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~I~i~~~~~v~~i~~~~~~~v~~~~~~~ 250 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKEFKIKLGAKVTSVEKSGDEKVEELEKGG 250 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhccEEEcCCEEEEEEEcCCceEEEEEcCC
Confidence 589999999999999999999999999998765321 10 011111233456777776432 3553 344
Q ss_pred --cEEecCEEEEecccccCCCCCC-CCCceecCCCccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHH
Q 037525 67 --HTVHADVILHCTGYKYHFPFLE-TNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVL 142 (182)
Q Consensus 67 --~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l 142 (182)
+++++|.||+|+|.+|+.+++. ...+++.++........++-. + .|++|.+|++... .....+..|++.+|..+
T Consensus 251 ~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s-~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i 328 (460)
T PRK06292 251 KTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQT-S-VPGIYAAGDVNGKPPLLHEAADEGRIAAENA 328 (460)
T ss_pred ceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCccc-C-CCCEEEEEecCCCccchhHHHHHHHHHHHHh
Confidence 3579999999999999988643 112344433221122222222 4 6999999998743 34578999999999999
Q ss_pred cCC
Q 037525 143 SGQ 145 (182)
Q Consensus 143 ~g~ 145 (182)
.+.
T Consensus 329 ~~~ 331 (460)
T PRK06292 329 AGD 331 (460)
T ss_pred cCC
Confidence 873
No 35
>PLN02546 glutathione reductase
Probab=99.24 E-value=2.1e-10 Score=100.89 Aligned_cols=140 Identities=18% Similarity=0.188 Sum_probs=94.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCC---------CCCCCCCe--EEcceeEEeeC--CCeEEE--c
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYE---------KQPGFDNM--WLHSMIESAHD--NGAVVF--R 64 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~---------~~~~~~~i--~~~~~v~~~~~--~~~v~~--~ 64 (182)
+|+|||+|++|+|+|..|++.+++|+++.+.+... .++ .+.. .+| ..+..+.++.+ ++.+.+ .
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~-~GV~i~~~~~v~~i~~~~~g~v~v~~~ 332 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSL-RGIEFHTEESPQAIIKSADGSLSLKTN 332 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHH-CCcEEEeCCEEEEEEEcCCCEEEEEEC
Confidence 58999999999999999999999999999876431 111 0111 133 34556677753 233333 3
Q ss_pred CCcEEecCEEEEecccccCCCCCC-CCCceecCC-Ccc-ccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHH
Q 037525 65 NGHTVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRV-GPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAG 140 (182)
Q Consensus 65 dg~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~-~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~ 140 (182)
+++...+|.||+|+|++++.+++. ...++++++ +.+ .+-|..+ + .|++|.+|++... ...+.+..|++.+|.
T Consensus 333 ~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T---s-~p~IYAaGDv~~~~~l~~~A~~~g~~~a~ 408 (558)
T PLN02546 333 KGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT---S-VPSIWAVGDVTDRINLTPVALMEGGALAK 408 (558)
T ss_pred CeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCcee---C-CCCEEEeeccCCCcccHHHHHHHHHHHHH
Confidence 454445899999999999988653 222344433 223 1233332 4 6999999998743 446788899999999
Q ss_pred HHcCC
Q 037525 141 VLSGQ 145 (182)
Q Consensus 141 ~l~g~ 145 (182)
.+.|.
T Consensus 409 ~i~g~ 413 (558)
T PLN02546 409 TLFGN 413 (558)
T ss_pred HHcCC
Confidence 99874
No 36
>PRK12831 putative oxidoreductase; Provisional
Probab=99.24 E-value=8.2e-11 Score=101.42 Aligned_cols=140 Identities=15% Similarity=0.074 Sum_probs=82.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCC-----CCCCe--EEcceeEEeeC--CC---eEEEc----
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQP-----GFDNM--WLHSMIESAHD--NG---AVVFR---- 64 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~-----~~~~i--~~~~~v~~~~~--~~---~v~~~---- 64 (182)
+|+|||+|++|+|+|..+.+.+.+|++++|+....+..... ....+ .....+.++.. ++ +|.+.
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~ 362 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMEL 362 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEe
Confidence 59999999999999999999988999999876422211100 00122 22233344421 11 12221
Q ss_pred --------------CCc--EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCcc-
Q 037525 65 --------------NGH--TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKVI- 126 (182)
Q Consensus 65 --------------dg~--~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~~- 126 (182)
+|+ .+++|.||+|+|+.++..++....++..+. +.+ ........++ .|++|.+|+...+.
T Consensus 363 ~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i-~vd~~~~~Ts-~pgVfAaGD~~~g~~ 440 (464)
T PRK12831 363 GEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCI-VADEETGLTS-KEGVFAGGDAVTGAA 440 (464)
T ss_pred cCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcE-EECCCCCccC-CCCEEEeCCCCCCch
Confidence 333 479999999999999987765422344432 222 2222223334 69999999986432
Q ss_pred cccHHHHHHHHHHHHH
Q 037525 127 PFPLCEYQSKWIAGVL 142 (182)
Q Consensus 127 ~~~~~e~qa~~ia~~l 142 (182)
....+..+++.+|..+
T Consensus 441 ~v~~Ai~~G~~AA~~I 456 (464)
T PRK12831 441 TVILAMGAGKKAAKAI 456 (464)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2344444444444443
No 37
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.23 E-value=2.6e-10 Score=101.82 Aligned_cols=145 Identities=15% Similarity=0.064 Sum_probs=95.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCCCCe--EEcceeEEeeCCC---eEEE--
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGFDNM--WLHSMIESAHDNG---AVVF-- 63 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~~~i--~~~~~v~~~~~~~---~v~~-- 63 (182)
+|+|||+|.+|+|+|..+++.+++|+++++.+.+.. ++ .+.....| ..+..|+++.+++ .+.+
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~ 393 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGH 393 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEE
Confidence 589999999999999999999999999998765321 11 01111123 3456677775421 2433
Q ss_pred cC-------C--------cEEecCEEEEecccccCCCCCCC-CCceecCCCcc-ccccccccC--CCCCCCEEEEeccCC
Q 037525 64 RN-------G--------HTVHADVILHCTGYKYHFPFLET-NGIVTMDDNRV-GPLYKHVFP--PVLAPWLSFVGLPWK 124 (182)
Q Consensus 64 ~d-------g--------~~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~~~-~~ly~~~~~--~~~~p~l~~iG~~~~ 124 (182)
.+ + +++++|.||||||.+|+++++.. ...+..+++.+ ..-|..+.. ++..|++|.+|++..
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g 473 (659)
T PTZ00153 394 SERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANG 473 (659)
T ss_pred eccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCC
Confidence 21 1 26899999999999999887642 12233333323 123333321 111489999999874
Q ss_pred c-ccccHHHHHHHHHHHHHcCC
Q 037525 125 V-IPFPLCEYQSKWIAGVLSGQ 145 (182)
Q Consensus 125 ~-~~~~~~e~qa~~ia~~l~g~ 145 (182)
. ...+.+..|++.++..|.|.
T Consensus 474 ~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 474 KQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred CccCHHHHHHHHHHHHHHHcCC
Confidence 3 34578899999999999875
No 38
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.23 E-value=2.8e-10 Score=98.33 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=96.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCC-Ce--EEEcC-
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDN-GA--VVFRN- 65 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~-~~--v~~~d- 65 (182)
+|+|||+|++|+|+|..|++.+.+|+++++++.+.. .+ .+... -++..+..|+++..+ ++ +.+.+
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~ 264 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDA 264 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeC
Confidence 589999999999999999999999999998765421 00 01111 133445677777642 23 44444
Q ss_pred -C--cEEecCEEEEecccccCCCCCCC-CCceecCCCccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHH
Q 037525 66 -G--HTVHADVILHCTGYKYHFPFLET-NGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAG 140 (182)
Q Consensus 66 -g--~~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~ 140 (182)
| +.+++|.||+|+|++|+.+++.. ..++..+++........+ ..+ .|++|.+|++.. ......+..|++.++.
T Consensus 265 ~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~Ts-~~~VyA~GD~~~~~~~~~~A~~~G~~aa~ 342 (475)
T PRK06327 265 DGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHC-RTN-VPNVYAIGDVVRGPMLAHKAEEEGVAVAE 342 (475)
T ss_pred CCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCC-ccC-CCCEEEEEeccCCcchHHHHHHHHHHHHH
Confidence 3 35799999999999999886532 123344332211222222 224 699999999864 3345678899999999
Q ss_pred HHcCCC
Q 037525 141 VLSGQI 146 (182)
Q Consensus 141 ~l~g~~ 146 (182)
.+.|..
T Consensus 343 ~i~g~~ 348 (475)
T PRK06327 343 RIAGQK 348 (475)
T ss_pred HHcCCC
Confidence 998753
No 39
>PRK13748 putative mercuric reductase; Provisional
Probab=99.22 E-value=2e-10 Score=101.03 Aligned_cols=141 Identities=16% Similarity=0.130 Sum_probs=93.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC---------CCCCC-CeEEcceeEEeeC-CCeEEEc-CCcE
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---------QPGFD-NMWLHSMIESAHD-NGAVVFR-NGHT 68 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~---------~~~~~-~i~~~~~v~~~~~-~~~v~~~-dg~~ 68 (182)
+|+|||+|++|+|+|..|++.+++|+++.|...+...+. +...+ ++..+..++++.. ++.+.+. ++.+
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~ 351 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGE 351 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCe
Confidence 589999999999999999999999999998542211110 11111 2334566777753 2233332 2336
Q ss_pred EecCEEEEecccccCCCCCC-CCCceecCCC-cc-ccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHHHcC
Q 037525 69 VHADVILHCTGYKYHFPFLE-TNGIVTMDDN-RV-GPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGVLSG 144 (182)
Q Consensus 69 ~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~-~~-~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l~g 144 (182)
+++|.||+|+|++|+..++. ...++++++. .+ ..-|..+ + .|++|.+|++.. ....+.+..|++.++..+.|
T Consensus 352 i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T---s-~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 427 (561)
T PRK13748 352 LRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRT---S-VPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTG 427 (561)
T ss_pred EEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCccc---C-CCCEEEeeecCCCccchhHHHHHHHHHHHHHcC
Confidence 89999999999999987653 2233444332 22 1233332 4 699999999864 33456788899999999987
Q ss_pred C
Q 037525 145 Q 145 (182)
Q Consensus 145 ~ 145 (182)
.
T Consensus 428 ~ 428 (561)
T PRK13748 428 G 428 (561)
T ss_pred C
Confidence 4
No 40
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.22 E-value=2.8e-10 Score=98.27 Aligned_cols=141 Identities=13% Similarity=0.107 Sum_probs=94.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCCCCeEEcceeEEeeC-CCe--EEEcCC-
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGFDNMWLHSMIESAHD-NGA--VVFRNG- 66 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~~~i~~~~~v~~~~~-~~~--v~~~dg- 66 (182)
+|+|||+|++|+|+|..+++.+++|+++++.+.... .+ .+...-++..+..++++.. +++ +.+.++
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~ 255 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKK 255 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCC
Confidence 589999999999999999999999999998765321 11 0111112344566777652 123 344442
Q ss_pred ---cEEecCEEEEecccccCCCCCCC-CCceecCCCc-c-ccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHH
Q 037525 67 ---HTVHADVILHCTGYKYHFPFLET-NGIVTMDDNR-V-GPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIA 139 (182)
Q Consensus 67 ---~~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~~-~-~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia 139 (182)
+++++|.||+|+|++|+.+++.. ..++++++.. + ..-|..+ + .|++|.+|++.. ......+..|++.++
T Consensus 256 ~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t---~-~p~VyAiGDv~~~~~la~~A~~eG~~aa 331 (471)
T PRK06467 256 APAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT---N-VPHIFAIGDIVGQPMLAHKGVHEGHVAA 331 (471)
T ss_pred CcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc---C-CCCEEEehhhcCCcccHHHHHHHHHHHH
Confidence 35899999999999999886532 1234443322 2 1223332 4 699999999864 334678899999999
Q ss_pred HHHcCC
Q 037525 140 GVLSGQ 145 (182)
Q Consensus 140 ~~l~g~ 145 (182)
..+.|.
T Consensus 332 ~~i~g~ 337 (471)
T PRK06467 332 EVIAGK 337 (471)
T ss_pred HHHcCC
Confidence 999875
No 41
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.21 E-value=1.3e-10 Score=99.71 Aligned_cols=138 Identities=18% Similarity=0.187 Sum_probs=87.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC------CCCCCCe--EEcceeEEeeC--CC---eEEEc---
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK------QPGFDNM--WLHSMIESAHD--NG---AVVFR--- 64 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~------~~~~~~i--~~~~~v~~~~~--~~---~v~~~--- 64 (182)
+|+|||+|++|+|+|..+++.+.+|++++|+....+... +.. ..| .....+.++.+ ++ +|++.
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~-~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~ 352 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEE-EGVKFHFLCQPVEIIGDEEGNVRAVKFRKMD 352 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHh-CCCEEEeccCcEEEEEcCCCeEEEEEEEEEE
Confidence 589999999999999999999999999998754321110 111 122 22334444432 11 23332
Q ss_pred ------CC-----------cEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-
Q 037525 65 ------NG-----------HTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV- 125 (182)
Q Consensus 65 ------dg-----------~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~- 125 (182)
+| ..+++|.||+|+|+.++..++... ++.++. +.+ ..... +.++ .|++|.+|+...+
T Consensus 353 ~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~-gl~~~~~G~i-~vd~~-~~Ts-~~~VfA~GD~~~g~ 428 (449)
T TIGR01316 353 CQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETT-RLKTSERGTI-VVDED-QRTS-IPGVFAGGDIILGA 428 (449)
T ss_pred ecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhcc-CcccCCCCeE-EeCCC-CccC-CCCEEEecCCCCCc
Confidence 22 257999999999999997766542 333332 222 11111 2224 6999999998643
Q ss_pred ccccHHHHHHHHHHHHHc
Q 037525 126 IPFPLCEYQSKWIAGVLS 143 (182)
Q Consensus 126 ~~~~~~e~qa~~ia~~l~ 143 (182)
.....+..|++.+|..+.
T Consensus 429 ~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 429 ATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345678888888887764
No 42
>PTZ00058 glutathione reductase; Provisional
Probab=99.21 E-value=5e-10 Score=98.50 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=94.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCCC---------CCCC-CCeEEcceeEEeeCC--CeE--EEcC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYEK---------QPGF-DNMWLHSMIESAHDN--GAV--VFRN 65 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~~---------~~~~-~~i~~~~~v~~~~~~--~~v--~~~d 65 (182)
+|+|||+|.+|+|+|..+++.+++|+++++++.+. .++. +... -++..+..+.++.++ +++ .+.+
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~ 318 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSD 318 (561)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECC
Confidence 58999999999999999999999999999876431 1110 1111 134445667777642 123 3334
Q ss_pred C-cEEecCEEEEecccccCCCCCCCCC-ceecCCCcc-ccccccccCCCCCCCEEEEeccCC------------------
Q 037525 66 G-HTVHADVILHCTGYKYHFPFLETNG-IVTMDDNRV-GPLYKHVFPPVLAPWLSFVGLPWK------------------ 124 (182)
Q Consensus 66 g-~~~~~D~vi~atG~~~~~~~l~~~~-~~~~~~~~~-~~ly~~~~~~~~~p~l~~iG~~~~------------------ 124 (182)
+ +++++|.|++|+|++|+.+++..+. .+..+++.+ .+-|.. ++ .|++|.+|++..
T Consensus 319 ~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe~lq---Ts-~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~ 394 (561)
T PTZ00058 319 GRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDNQR---TS-VKHIYAVGDCCMVKKNQEIEDLNLLKLYNE 394 (561)
T ss_pred CCEEEECCEEEECcCCCCCccccCccccceecCCCeEEECcCCc---cC-CCCEEEeEeccCcccccccccccccccccc
Confidence 4 4689999999999999988775321 122222322 122333 34 699999999864
Q ss_pred ----------------c-ccccHHHHHHHHHHHHHcCC
Q 037525 125 ----------------V-IPFPLCEYQSKWIAGVLSGQ 145 (182)
Q Consensus 125 ----------------~-~~~~~~e~qa~~ia~~l~g~ 145 (182)
. ...+.+..|++.++..+.|.
T Consensus 395 ~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 395 EPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred ccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 1 22467899999999999875
No 43
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.21 E-value=1.5e-10 Score=96.51 Aligned_cols=137 Identities=20% Similarity=0.207 Sum_probs=87.0
Q ss_pred CEEEEcCCccHHHHHHHHhcc------CCeEEEEeccCCCC-CCC-C--------CCCC-CCeEEcceeEEeeCCCeEEE
Q 037525 1 VIILVGSSASAVDICRDLAGV------AKEVHLVSRSVADG-TYE-K--------QPGF-DNMWLHSMIESAHDNGAVVF 63 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~------a~~V~l~~r~~~~~-~~~-~--------~~~~-~~i~~~~~v~~~~~~~~v~~ 63 (182)
+|+|||+|.+|+|+|.+|++. ..+|+++ +.+... ... . +... -++..+..++++.++ .+.+
T Consensus 147 ~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~v~~ 224 (364)
T TIGR03169 147 RLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG-ALIL 224 (364)
T ss_pred eEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC-eEEe
Confidence 589999999999999999863 2479998 433221 110 0 0011 123345678888654 7899
Q ss_pred cCCcEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc------ccccHHHHHHH
Q 037525 64 RNGHTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV------IPFPLCEYQSK 136 (182)
Q Consensus 64 ~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~------~~~~~~e~qa~ 136 (182)
.+|+++++|.||+|+|.+++ +++... .+..+. +.+ .....+-..+ .|++|.+|++... .....+..||+
T Consensus 225 ~~g~~i~~D~vi~a~G~~p~-~~l~~~-gl~~~~~g~i-~vd~~l~~~~-~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~ 300 (364)
T TIGR03169 225 ADGRTLPADAILWATGARAP-PWLAES-GLPLDEDGFL-RVDPTLQSLS-HPHVFAAGDCAVITDAPRPKAGVYAVRQAP 300 (364)
T ss_pred CCCCEEecCEEEEccCCChh-hHHHHc-CCCcCCCCeE-EECCccccCC-CCCEEEeeeeeecCCCCCCCchHHHHHhHH
Confidence 89999999999999999987 454432 223322 222 2222222234 6999999998631 12345777888
Q ss_pred HHHHHHc
Q 037525 137 WIAGVLS 143 (182)
Q Consensus 137 ~ia~~l~ 143 (182)
.+|+.+.
T Consensus 301 ~~a~ni~ 307 (364)
T TIGR03169 301 ILAANLR 307 (364)
T ss_pred HHHHHHH
Confidence 7777664
No 44
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.20 E-value=5.2e-10 Score=96.05 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=95.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeC-CCeEE--EcCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHD-NGAVV--FRNG 66 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~-~~~v~--~~dg 66 (182)
+|+|||+|.+|+|+|..|++.+.+|+++.|.+.... .+ .+... -++.....++++.. ++++. +.+|
T Consensus 172 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g 251 (461)
T TIGR01350 172 SLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGG 251 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCC
Confidence 589999999999999999999999999998764321 10 01111 13444567777753 23443 3466
Q ss_pred --cEEecCEEEEecccccCCC--CCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHH
Q 037525 67 --HTVHADVILHCTGYKYHFP--FLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAG 140 (182)
Q Consensus 67 --~~~~~D~vi~atG~~~~~~--~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~ 140 (182)
+++++|.||+|+|..|+.+ ++.. ..+..+. +.+ .....+ ..+ .|++|.+|++... .....+..|++.+|.
T Consensus 252 ~~~~i~~D~vi~a~G~~p~~~~l~~~~-~gl~~~~~g~i-~vd~~l-~t~-~~~IyaiGD~~~~~~~~~~A~~~g~~aa~ 327 (461)
T TIGR01350 252 ETETLTGEKVLVAVGRKPNTEGLGLEN-LGVELDERGRI-VVDEYM-RTN-VPGIYAIGDVIGGPMLAHVASHEGIVAAE 327 (461)
T ss_pred cEEEEEeCEEEEecCCcccCCCCCcHh-hCceECCCCcE-eeCCCc-ccC-CCCEEEeeecCCCcccHHHHHHHHHHHHH
Confidence 4689999999999999977 3333 2233333 222 222222 224 6999999998643 346788999999999
Q ss_pred HHcCCC
Q 037525 141 VLSGQI 146 (182)
Q Consensus 141 ~l~g~~ 146 (182)
.+.+..
T Consensus 328 ~i~~~~ 333 (461)
T TIGR01350 328 NIAGKE 333 (461)
T ss_pred HHcCCC
Confidence 998753
No 45
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.20 E-value=2.1e-10 Score=105.72 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=89.3
Q ss_pred CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCCCC---CCC--CCCeE--EcceeEEeeCCCeE----------
Q 037525 1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTYEK---QPG--FDNMW--LHSMIESAHDNGAV---------- 61 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~~~---~~~--~~~i~--~~~~v~~~~~~~~v---------- 61 (182)
+|+|||||++|+|+|..+.+. +++|++++|+....++.. +.. ...+. ....+.++.+++.+
T Consensus 670 rVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~AleeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~ 749 (1019)
T PRK09853 670 HVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEALEDGVEFKELLNPESFDADGTLTCRVMKLGEP 749 (1019)
T ss_pred EEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHHHcCCEEEeCCceEEEEcCCcEEEEEEEeecc
Confidence 599999999999999998876 358999998753221110 000 01121 12222333211111
Q ss_pred ---------EEcCCcEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCC-cccccH
Q 037525 62 ---------VFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPL 130 (182)
Q Consensus 62 ---------~~~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~ 130 (182)
...++.++++|.||+|+|+.++.+++... ++.++. +.+ .. ...+..+ .|++|.+|+... ......
T Consensus 750 d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~-GL~ld~~G~I-~V-DetlqTs-~pgVFAaGD~a~Gp~tvv~ 825 (1019)
T PRK09853 750 DESGRRRPVETGETVTLEADTVITAIGEQVDTELLKAN-GIPLDKKGWP-VV-DANGETS-LTNVYMIGDVQRGPSTIVA 825 (1019)
T ss_pred cCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhc-CccccCCCCE-Ee-CCCcccC-CCCEEEEeccccCchHHHH
Confidence 11223468999999999999998887542 344332 222 22 1222334 699999999864 345678
Q ss_pred HHHHHHHHHHHHcCCCC
Q 037525 131 CEYQSKWIAGVLSGQIV 147 (182)
Q Consensus 131 ~e~qa~~ia~~l~g~~~ 147 (182)
+..|++.+|..+.+...
T Consensus 826 Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 826 AIADARRAADAILSREG 842 (1019)
T ss_pred HHHHHHHHHHHHhhhcC
Confidence 88999999999987654
No 46
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.19 E-value=6.3e-10 Score=96.01 Aligned_cols=143 Identities=13% Similarity=0.102 Sum_probs=94.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeC--CCeE---EEc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHD--NGAV---VFR 64 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~--~~~v---~~~ 64 (182)
+|+|||+|++|+|+|..|++.+++|+++.|++.... .+ .+... -++..+..++++.. ++++ .+.
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~ 261 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEH 261 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEe
Confidence 589999999999999999999999999998764311 10 01111 13344566777752 2233 234
Q ss_pred CCc--EEecCEEEEecccccCCCCCCCC-CceecCCCccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHH
Q 037525 65 NGH--TVHADVILHCTGYKYHFPFLETN-GIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAG 140 (182)
Q Consensus 65 dg~--~~~~D~vi~atG~~~~~~~l~~~-~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~ 140 (182)
+|+ ++++|.||+|+|.+|+.+.+..+ ..+..+++.+ ....++ ..+ .|++|.+|+.... .....+..|++.++.
T Consensus 262 ~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i-~Vd~~l-~ts-~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ 338 (472)
T PRK05976 262 NGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFI-QIDDFC-QTK-ERHIYAIGDVIGEPQLAHVAMAEGEMAAE 338 (472)
T ss_pred CCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEE-EECCCc-ccC-CCCEEEeeecCCCcccHHHHHHHHHHHHH
Confidence 664 57899999999999998765321 1222222222 222222 223 5999999998643 346788899999999
Q ss_pred HHcCCC
Q 037525 141 VLSGQI 146 (182)
Q Consensus 141 ~l~g~~ 146 (182)
.+.|..
T Consensus 339 ~i~g~~ 344 (472)
T PRK05976 339 HIAGKK 344 (472)
T ss_pred HHcCCC
Confidence 998753
No 47
>PRK14727 putative mercuric reductase; Provisional
Probab=99.17 E-value=5.4e-10 Score=96.69 Aligned_cols=141 Identities=16% Similarity=0.085 Sum_probs=93.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC---------CCCCC-CCeEEcceeEEeeC-CCeEE--EcCCc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE---------KQPGF-DNMWLHSMIESAHD-NGAVV--FRNGH 67 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~---------~~~~~-~~i~~~~~v~~~~~-~~~v~--~~dg~ 67 (182)
+|+|||+|++|+|+|..+++.+++|+++.+...+...+ .+... -++..+..++++.. ++++. +.++
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g- 268 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG- 268 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-
Confidence 58999999999999999999999999998753221111 01111 12334556777652 22333 3344
Q ss_pred EEecCEEEEecccccCCCCCCC-CCceecCC-CccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHHHcC
Q 037525 68 TVHADVILHCTGYKYHFPFLET-NGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGVLSG 144 (182)
Q Consensus 68 ~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l~g 144 (182)
++++|.||+|+|..|+..++.. ..+++.+. +.+ .....+- .+ .|++|.+|++.. ....+.+..|++.++..+.|
T Consensus 269 ~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i-~Vd~~~~-Ts-~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 269 ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAI-VVNPAME-TS-APDIYAAGDCSDLPQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred eEEeCEEEEccCCCCCccCCCchhhCceecCCCCE-EECCCee-cC-CCCEEEeeecCCcchhhhHHHHHHHHHHHHHcC
Confidence 5889999999999999886532 12344432 222 2222222 24 699999999874 34467888999999999987
Q ss_pred C
Q 037525 145 Q 145 (182)
Q Consensus 145 ~ 145 (182)
.
T Consensus 346 ~ 346 (479)
T PRK14727 346 G 346 (479)
T ss_pred C
Confidence 5
No 48
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.17 E-value=9.3e-10 Score=94.66 Aligned_cols=142 Identities=14% Similarity=0.149 Sum_probs=95.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCC-CeEEEc-CCc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDN-GAVVFR-NGH 67 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~-~~v~~~-dg~ 67 (182)
+|+|||+|++|+|+|..+++...+|+++.+++.... .+ .+... -++..+..|+++..+ ..+.+. +|+
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~ 251 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGS 251 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCc
Confidence 589999999999999999999899999998764321 00 01111 134445677777643 245554 443
Q ss_pred --EEecCEEEEecccccCCCCCCC-CCceecCCCccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHc
Q 037525 68 --TVHADVILHCTGYKYHFPFLET-NGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLS 143 (182)
Q Consensus 68 --~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~ 143 (182)
++++|.||+|+|.+|+.+++.. ..++..+++.+ ..-.++- .+ .|++|.+|+...+ .....+..|++.++..+.
T Consensus 252 ~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi-~Vd~~~~-ts-~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~ 328 (458)
T PRK06912 252 IQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGI-SVNEHMQ-TN-VPHIYACGDVIGGIQLAHVAFHEGTTAALHAS 328 (458)
T ss_pred eEEEEeCEEEEecCCccCCCCCCchhcCceecCCCE-EeCCCee-cC-CCCEEEEeecCCCcccHHHHHHHHHHHHHHHc
Confidence 5789999999999999876531 12233333333 2222222 24 6999999998743 345688899999999998
Q ss_pred CC
Q 037525 144 GQ 145 (182)
Q Consensus 144 g~ 145 (182)
|.
T Consensus 329 g~ 330 (458)
T PRK06912 329 GE 330 (458)
T ss_pred CC
Confidence 75
No 49
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.17 E-value=9.9e-10 Score=93.96 Aligned_cols=142 Identities=12% Similarity=0.087 Sum_probs=94.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCCC-CeEEcceeEEeeCC-CeEEEc-CCc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGFD-NMWLHSMIESAHDN-GAVVFR-NGH 67 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~~-~i~~~~~v~~~~~~-~~v~~~-dg~ 67 (182)
+|+|||+|.+|+|+|..|++.+.+|++++|++.+.. .+ .+...+ ++..+..|+++..+ +.+.+. ++.
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g 239 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA 239 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC
Confidence 589999999999999999999999999998764321 00 011111 23445677777642 344443 233
Q ss_pred EEecCEEEEecccccCCCCCCC-CCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHcC
Q 037525 68 TVHADVILHCTGYKYHFPFLET-NGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLSG 144 (182)
Q Consensus 68 ~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~g 144 (182)
++++|.||+|+|.+|+.+++.. ..++..++ +.+ ....++ ..+ .|++|.+|++... ...+.+..|++.++..+.|
T Consensus 240 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i-~vd~~~-~Ts-~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 240 QLAVDALLIASGRQPATASLHPENAGIAVNERGAI-VVDKYL-HTT-ADNIWAMGDVTGGLQFTYISLDDYRIVRDELLG 316 (441)
T ss_pred eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcE-EECCCc-ccC-CCCEEEeeecCCCccchhHHHHHHHHHHHHHcC
Confidence 5889999999999999876532 22344433 223 222222 224 6999999998753 3456778889999998887
Q ss_pred C
Q 037525 145 Q 145 (182)
Q Consensus 145 ~ 145 (182)
.
T Consensus 317 ~ 317 (441)
T PRK08010 317 E 317 (441)
T ss_pred C
Confidence 3
No 50
>PRK14694 putative mercuric reductase; Provisional
Probab=99.16 E-value=6.5e-10 Score=95.85 Aligned_cols=142 Identities=14% Similarity=0.124 Sum_probs=93.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC---------CCCCC-CeEEcceeEEeeCC-CeEEEc-CCcE
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---------QPGFD-NMWLHSMIESAHDN-GAVVFR-NGHT 68 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~---------~~~~~-~i~~~~~v~~~~~~-~~v~~~-dg~~ 68 (182)
+|+|||+|++|+|+|..|++.+++|+++.+...+...+. +...+ ++..+..++++..+ +.+.+. ++.+
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~ 259 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGT 259 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCE
Confidence 589999999999999999999999999987532211100 00111 23445677777532 233332 3446
Q ss_pred EecCEEEEecccccCCCCCCC-CCceecCCCccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHHHcCC
Q 037525 69 VHADVILHCTGYKYHFPFLET-NGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGVLSGQ 145 (182)
Q Consensus 69 ~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~ 145 (182)
+++|.||+|+|..|+.+++.. ...++.+++.+ ..-.++- ++ .|++|.+|++.. ....+.+..|++.++..+.|.
T Consensus 260 i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i-~vd~~~~-Ts-~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~ 335 (468)
T PRK14694 260 LRAEQLLVATGRTPNTENLNLESIGVETERGAI-RIDEHLQ-TT-VSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGG 335 (468)
T ss_pred EEeCEEEEccCCCCCcCCCCchhcCcccCCCeE-eeCCCcc-cC-CCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCC
Confidence 899999999999999887642 12233333323 2222222 24 699999999864 334567888999999999775
No 51
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.16 E-value=1.5e-09 Score=92.85 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=92.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCCC-CeEEcceeEEeeCC-CeEEE-cCCc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGFD-NMWLHSMIESAHDN-GAVVF-RNGH 67 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~~-~i~~~~~v~~~~~~-~~v~~-~dg~ 67 (182)
+|+|||+|++|+|+|..+++.+.+|+++.|++.+.. .+. +...+ ++..+..++++..+ +.+.. .+|+
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~ 238 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDE 238 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCe
Confidence 589999999999999999999999999999765421 100 01111 23344567777642 24433 4677
Q ss_pred EEecCEEEEecccccCCCCCCCC-CceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHcC
Q 037525 68 TVHADVILHCTGYKYHFPFLETN-GIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLSG 144 (182)
Q Consensus 68 ~~~~D~vi~atG~~~~~~~l~~~-~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~g 144 (182)
++++|.||+|+|..|+.+.+.-. ..+..+. +.+ ....++ ..+ .|++|.+|++..+ .....+..|++.++..+.|
T Consensus 239 ~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i-~vd~~~-~t~-~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~ 315 (438)
T PRK07251 239 TYRFDALLYATGRKPNTEPLGLENTDIELTERGAI-KVDDYC-QTS-VPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTG 315 (438)
T ss_pred EEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcE-EECCCc-ccC-CCCEEEeeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 88999999999999997765321 1223322 222 222222 224 6999999998753 3346677788888888776
Q ss_pred C
Q 037525 145 Q 145 (182)
Q Consensus 145 ~ 145 (182)
.
T Consensus 316 ~ 316 (438)
T PRK07251 316 D 316 (438)
T ss_pred C
Confidence 4
No 52
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.14 E-value=8.3e-11 Score=98.21 Aligned_cols=138 Identities=14% Similarity=0.192 Sum_probs=87.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCC--------------eEEEEeccCCC-CCCCC--------CCCCCC--eEEcceeEEe
Q 037525 1 VIILVGSSASAVDICRDLAGVAK--------------EVHLVSRSVAD-GTYEK--------QPGFDN--MWLHSMIESA 55 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~--------------~V~l~~r~~~~-~~~~~--------~~~~~~--i~~~~~v~~~ 55 (182)
.++|||||++|+|.|.||++.-. +|+++.-.+.. .+++. +..... +.....|..+
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V 299 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKV 299 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEee
Confidence 37999999999999999998521 47777655422 22211 111123 3445677777
Q ss_pred eCCCeEEEc--CCc--EEecCEEEEecccccCCCCCCCCCceecCCCc---c-ccccccccCCCCCCCEEEEeccC-C--
Q 037525 56 HDNGAVVFR--NGH--TVHADVILHCTGYKYHFPFLETNGIVTMDDNR---V-GPLYKHVFPPVLAPWLSFVGLPW-K-- 124 (182)
Q Consensus 56 ~~~~~v~~~--dg~--~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~---~-~~ly~~~~~~~~~p~l~~iG~~~-~-- 124 (182)
++ +.|... ||+ +++.-.++|+||-.+. |+..... ..++++. + .+-|.. ..+ .+|+|.+|++. .
T Consensus 300 ~~-~~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm-~~i~e~~rr~L~vDE~Lr--V~G-~~nvfAiGDca~~~~ 373 (491)
T KOG2495|consen 300 TE-KTIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLM-KQIDEQGRRGLAVDEWLR--VKG-VKNVFAIGDCADQRG 373 (491)
T ss_pred cC-cEEEEEcCCCceeeecceEEEecCCCCCc-hhhhhHh-hcCCccCceeeeeeceee--ccC-cCceEEecccccccc
Confidence 66 356655 454 5789999999998875 4443211 1111111 1 123333 355 68999999997 2
Q ss_pred -cccccHHHHHHHHHHHHHcC
Q 037525 125 -VIPFPLCEYQSKWIAGVLSG 144 (182)
Q Consensus 125 -~~~~~~~e~qa~~ia~~l~g 144 (182)
.++.+.++.|+.|+|+.+..
T Consensus 374 ~~~tAQVA~QqG~yLAk~fn~ 394 (491)
T KOG2495|consen 374 LKPTAQVAEQQGAYLAKNFNK 394 (491)
T ss_pred CccHHHHHHHHHHHHHHHHHH
Confidence 24678999999999999973
No 53
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.12 E-value=2.7e-10 Score=99.41 Aligned_cols=118 Identities=13% Similarity=0.204 Sum_probs=79.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCC----CCCCCCC--CeEEcceeEEeeCC-C---eEEEcC---C-
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTY----EKQPGFD--NMWLHSMIESAHDN-G---AVVFRN---G- 66 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~----~~~~~~~--~i~~~~~v~~~~~~-~---~v~~~d---g- 66 (182)
+|+|||+|++|+|+|..|++.+++|+++.+.+..... ..+.... ++..+..++++.++ + +|++.+ |
T Consensus 354 ~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~ 433 (515)
T TIGR03140 354 DVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGE 433 (515)
T ss_pred EEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCc
Confidence 5899999999999999999999999999987654211 1111112 33445667777643 2 366654 2
Q ss_pred -cEEecCEEEEecccccCCCCCCCCCceecCC-Ccc-ccccccccCCCCCCCEEEEeccCC
Q 037525 67 -HTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRV-GPLYKHVFPPVLAPWLSFVGLPWK 124 (182)
Q Consensus 67 -~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~-~~ly~~~~~~~~~p~l~~iG~~~~ 124 (182)
+.+++|.||+|+|..|+.+++... +..+. +.+ ..-+.. ++ .|++|.+|++..
T Consensus 434 ~~~i~~D~vi~a~G~~Pn~~~l~~~--~~~~~~G~I~vd~~~~---Ts-~p~IyAaGDv~~ 488 (515)
T TIGR03140 434 EKQLDLDGVFVQIGLVPNTEWLKDA--VELNRRGEIVIDERGR---TS-VPGIFAAGDVTT 488 (515)
T ss_pred EEEEEcCEEEEEeCCcCCchHHhhh--cccCCCCeEEECCCCC---CC-CCCEEEcccccC
Confidence 357999999999999998887642 33332 222 122322 24 699999999864
No 54
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.12 E-value=8.3e-10 Score=96.37 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=88.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCCe--EEcceeEEeeCC-C---eEEEcC---Cc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDNM--WLHSMIESAHDN-G---AVVFRN---GH 67 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~i--~~~~~v~~~~~~-~---~v~~~d---g~ 67 (182)
+|+|||+|++|+|+|..|+..+++|+++.+++.+.... .+....+| ..+..+.++.++ + .+.+.+ |+
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~ 432 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGE 432 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCc
Confidence 58999999999999999999999999999876542211 11111233 345567777654 2 355543 43
Q ss_pred --EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCcc------cccHHHHHHHHH
Q 037525 68 --TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKVI------PFPLCEYQSKWI 138 (182)
Q Consensus 68 --~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~~------~~~~~e~qa~~i 138 (182)
++++|.|++|+|++|+.+|+... +..+. +.+ .....+- ++ .|++|.+|+....+ ........|..+
T Consensus 433 ~~~i~~D~v~~~~G~~p~~~~l~~~--v~~~~~g~i-~vd~~l~-Ts-~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~ 507 (517)
T PRK15317 433 EHHLELEGVFVQIGLVPNTEWLKGT--VELNRRGEI-IVDARGA-TS-VPGVFAAGDCTTVPYKQIIIAMGEGAKAALSA 507 (517)
T ss_pred EEEEEcCEEEEeECCccCchHHhhh--eeeCCCCcE-EECcCCC-CC-CCCEEECccccCCCCCEEEEhhhhHHHHHHHH
Confidence 47899999999999998888653 33332 223 2222222 34 69999999986422 123334455555
Q ss_pred HHHHc
Q 037525 139 AGVLS 143 (182)
Q Consensus 139 a~~l~ 143 (182)
+.++.
T Consensus 508 ~~~l~ 512 (517)
T PRK15317 508 FDYLI 512 (517)
T ss_pred HHHHh
Confidence 55544
No 55
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.10 E-value=1.1e-09 Score=91.22 Aligned_cols=140 Identities=12% Similarity=0.053 Sum_probs=83.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCC-eEEEEeccCCCCCCC------CCCCCC-CeEEcceeEEeeCCC---eEEEc-----
Q 037525 1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSVADGTYE------KQPGFD-NMWLHSMIESAHDNG---AVVFR----- 64 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~~~~~~~------~~~~~~-~i~~~~~v~~~~~~~---~v~~~----- 64 (182)
+|+|||+|++|+|+|..|+.... +|+++.|+....... .+...+ ++.....+.++.+++ .|.+.
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~ 253 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLG 253 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEec
Confidence 48999999999999999987655 499999875322110 011110 122233444554322 12221
Q ss_pred -------------C--CcEEecCEEEEecccccCCCCCCCCCceecCCC-ccccccccccCCCCCCCEEEEeccCC-ccc
Q 037525 65 -------------N--GHTVHADVILHCTGYKYHFPFLETNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWK-VIP 127 (182)
Q Consensus 65 -------------d--g~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~ 127 (182)
+ ++.+++|.||+|+|++|+..+.....++..+.+ .+ ...... ..+ .|++|.+|++.. ...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i-~vd~~~-~t~-~~~vyaiGD~~~~~~~ 330 (352)
T PRK12770 254 EPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEI-VVDEKH-MTS-REGVFAAGDVVTGPSK 330 (352)
T ss_pred CcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcE-eeCCCc-ccC-CCCEEEEcccccCcch
Confidence 2 236799999999999998766543122333322 22 222221 124 599999999864 334
Q ss_pred ccHHHHHHHHHHHHHc
Q 037525 128 FPLCEYQSKWIAGVLS 143 (182)
Q Consensus 128 ~~~~e~qa~~ia~~l~ 143 (182)
...+..|++.+|..+.
T Consensus 331 ~~~A~~~g~~aa~~i~ 346 (352)
T PRK12770 331 IGKAIKSGLRAAQSIH 346 (352)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5567777777776654
No 56
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.08 E-value=2e-09 Score=96.43 Aligned_cols=143 Identities=14% Similarity=0.115 Sum_probs=83.0
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCCCCCCC-------CCCCCCeEEcceeEEeeC-CCeE-----EE---
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVADGTYEK-------QPGFDNMWLHSMIESAHD-NGAV-----VF--- 63 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~~~~~~-------~~~~~~i~~~~~v~~~~~-~~~v-----~~--- 63 (182)
+|+|||+|++|+|+|..+.+.+ ++|++++|+....++.. +..--++.....+.++.+ ++.+ .+
T Consensus 325 ~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~ 404 (652)
T PRK12814 325 KVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQG 404 (652)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEec
Confidence 5899999999999999999864 57999998763221110 000002222233333321 1111 11
Q ss_pred ------------cCCc--EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCcc-c
Q 037525 64 ------------RNGH--TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKVI-P 127 (182)
Q Consensus 64 ------------~dg~--~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~~-~ 127 (182)
.+|+ .+++|.||+|+|+.++..++... ++.++. +.+ ......+.++ .|++|.+|+...+. .
T Consensus 405 ~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~-gl~~~~~G~I-~vd~~~~~Ts-~pgVfA~GDv~~g~~~ 481 (652)
T PRK12814 405 EPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAA-GIGTSRNGTV-KVDPETLQTS-VAGVFAGGDCVTGADI 481 (652)
T ss_pred ccCCCCCCcceecCCceEEEECCEEEECCCCcCCccccccc-CccccCCCcE-eeCCCCCcCC-CCCEEEcCCcCCCchH
Confidence 1233 47899999999999998887542 334332 222 2322233345 69999999986432 2
Q ss_pred ccHHHH----HHHHHHHHHcCCC
Q 037525 128 FPLCEY----QSKWIAGVLSGQI 146 (182)
Q Consensus 128 ~~~~e~----qa~~ia~~l~g~~ 146 (182)
...+.. .|..|.++|.|+.
T Consensus 482 v~~Ai~~G~~AA~~I~~~L~g~~ 504 (652)
T PRK12814 482 AINAVEQGKRAAHAIDLFLNGKP 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 334444 4555555666653
No 57
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.08 E-value=9.8e-10 Score=101.63 Aligned_cols=146 Identities=16% Similarity=0.118 Sum_probs=89.1
Q ss_pred CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCCCC---CCC--CCCeE--EcceeEEeeCC-------------
Q 037525 1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTYEK---QPG--FDNMW--LHSMIESAHDN------------- 58 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~~~---~~~--~~~i~--~~~~v~~~~~~------------- 58 (182)
+|+|||||++|+|+|..+.+. +++|++++|+....++.. +.. ...+. ....+.++.++
T Consensus 668 ~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~aleeGVe~~~~~~p~~I~~g~l~v~~~~l~~~d 747 (1012)
T TIGR03315 668 HVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEALEDGVDFKELLSPESFEDGTLTCEVMKLGEPD 747 (1012)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHHHcCCEEEeCCceEEEECCeEEEEEEEeeccc
Confidence 589999999999999998875 468999998753211100 000 01121 11222222211
Q ss_pred --C-eEEEcCCc--EEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCC-cccccHHH
Q 037525 59 --G-AVVFRNGH--TVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCE 132 (182)
Q Consensus 59 --~-~v~~~dg~--~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e 132 (182)
+ .....+|+ ++++|.||+|+|+.++.+++... ++.++.............++ .|++|.+|+... ......+.
T Consensus 748 ~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~-GL~ld~~G~I~VD~~~~~Ts-~pgVFAaGD~a~GP~tVv~AI 825 (1012)
T TIGR03315 748 ASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKN-GIPLDEYGWPVVNQATGETN-ITNVFVIGDANRGPATIVEAI 825 (1012)
T ss_pred CCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhc-CcccCCCCCEEeCCCCCccC-CCCEEEEeCcCCCccHHHHHH
Confidence 1 11222454 47999999999999998877542 34433322112222222334 699999999864 34567889
Q ss_pred HHHHHHHHHHcCCCCC
Q 037525 133 YQSKWIAGVLSGQIVL 148 (182)
Q Consensus 133 ~qa~~ia~~l~g~~~l 148 (182)
.|++.+|..+.++...
T Consensus 826 aqGr~AA~nIl~~~~~ 841 (1012)
T TIGR03315 826 ADGRKAANAILSREGL 841 (1012)
T ss_pred HHHHHHHHHHhccccC
Confidence 9999999999866443
No 58
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.06 E-value=1.3e-09 Score=99.17 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=82.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCe-EEEEeccCCCCCCCCCC-----CCCCeE--EcceeEEeeC--CC---eEEEc---
Q 037525 1 VIILVGSSASAVDICRDLAGVAKE-VHLVSRSVADGTYEKQP-----GFDNMW--LHSMIESAHD--NG---AVVFR--- 64 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~-V~l~~r~~~~~~~~~~~-----~~~~i~--~~~~v~~~~~--~~---~v~~~--- 64 (182)
+|+|||||++|+|+|..+.+.+.+ |++++|+....++.... ....+. ....+.++.. ++ +|.+.
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~ 651 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKME 651 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEE
Confidence 589999999999999999997665 99999876432211100 001222 2233333321 11 12221
Q ss_pred ---------------CCc--EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCcc
Q 037525 65 ---------------NGH--TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKVI 126 (182)
Q Consensus 65 ---------------dg~--~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~~ 126 (182)
+|+ ++++|.||+|+|+.++..++.....+.++. +.+ ...... .++ .|++|.+|+...+.
T Consensus 652 ~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i-~vd~~~-~Ts-~~gVfA~GD~~~g~ 728 (752)
T PRK12778 652 LGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTI-VVDEEM-QSS-IPGIYAGGDIVRGG 728 (752)
T ss_pred ecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCE-EeCCCC-CCC-CCCEEEeCCccCCc
Confidence 122 479999999999999976654322333332 222 222222 334 69999999987532
Q ss_pred -cccHHHHHHHHHHHHHc
Q 037525 127 -PFPLCEYQSKWIAGVLS 143 (182)
Q Consensus 127 -~~~~~e~qa~~ia~~l~ 143 (182)
....+..|++.+|..+.
T Consensus 729 ~~vv~Av~~G~~AA~~I~ 746 (752)
T PRK12778 729 ATVILAMGDGKRAAAAID 746 (752)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 34556666666666553
No 59
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.00 E-value=2.2e-09 Score=99.47 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=88.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCC-----CCC--eEEcceeEEeeCC--C-eE---EE----
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPG-----FDN--MWLHSMIESAHDN--G-AV---VF---- 63 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~-----~~~--i~~~~~v~~~~~~--~-~v---~~---- 63 (182)
+|+|||||++|+|.|..+.+.+.+|++++|+....++..... ... +.....++++..+ + .+ .+
T Consensus 449 ~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~ 528 (944)
T PRK12779 449 EVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNE 528 (944)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEE
Confidence 599999999999999999998889999998753222211000 011 2222233343211 0 11 11
Q ss_pred -------------cCCc--EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCcc-
Q 037525 64 -------------RNGH--TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKVI- 126 (182)
Q Consensus 64 -------------~dg~--~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~~- 126 (182)
.+|+ .+++|.||+|+|+.++..+......++.+. +.+ ......+.++ .|++|..|+...+.
T Consensus 529 l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I-~vd~~~~~Ts-~pgVFAaGD~~~G~~ 606 (944)
T PRK12779 529 LGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTI-EVEKGSQRTS-IKGVYSGGDAARGGS 606 (944)
T ss_pred eccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCE-EECCCCCccC-CCCEEEEEcCCCChH
Confidence 1343 479999999999998854332222333332 222 2222223334 69999999987543
Q ss_pred cccHHHHHHHHHHHHHcCCCCCC
Q 037525 127 PFPLCEYQSKWIAGVLSGQIVLP 149 (182)
Q Consensus 127 ~~~~~e~qa~~ia~~l~g~~~lP 149 (182)
....+-.+++.+|..+...+.+.
T Consensus 607 ~vv~Ai~eGr~AA~~I~~~L~~~ 629 (944)
T PRK12779 607 TAIRAAGDGQAAAKEIVGEIPFT 629 (944)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 45667778888888887655553
No 60
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=8e-10 Score=85.65 Aligned_cols=119 Identities=14% Similarity=0.131 Sum_probs=78.7
Q ss_pred EEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCCeEE--cceeEEeeCC----CeEEEc---CC--
Q 037525 2 IILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDNMWL--HSMIESAHDN----GAVVFR---NG-- 66 (182)
Q Consensus 2 V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~i~~--~~~v~~~~~~----~~v~~~---dg-- 66 (182)
.+|||||.||+|.|..|.+++++||+++|++.++... +..+.++|.. +..+.+..++ +++.+. .|
T Consensus 160 laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~ 239 (322)
T KOG0404|consen 160 LAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEE 239 (322)
T ss_pred eEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcc
Confidence 5799999999999999999999999999998875421 1223345543 2222222222 134443 24
Q ss_pred cEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccC
Q 037525 67 HTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPW 123 (182)
Q Consensus 67 ~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~ 123 (182)
+.++++.+++++|-.|++.|++.. ++++.+...-.-.+....+ .|++|..|+..
T Consensus 240 ~dl~v~GlFf~IGH~Pat~~l~gq--ve~d~~GYi~t~pgts~Ts-vpG~FAAGDVq 293 (322)
T KOG0404|consen 240 TDLPVSGLFFAIGHSPATKFLKGQ--VELDEDGYIVTRPGTSLTS-VPGVFAAGDVQ 293 (322)
T ss_pred cccccceeEEEecCCchhhHhcCc--eeeccCceEEeccCccccc-ccceeeccccc
Confidence 347899999999999999999863 4443332111222333344 79999999875
No 61
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.97 E-value=7.7e-09 Score=91.09 Aligned_cols=136 Identities=14% Similarity=0.162 Sum_probs=84.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCC--eEEcceeEEeeCCCe---EEE---cCCcE
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDN--MWLHSMIESAHDNGA---VVF---RNGHT 68 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~--i~~~~~v~~~~~~~~---v~~---~dg~~ 68 (182)
+|+|||||++|+|+|..|++.+++|++++|++.+.... .+....+ +..+..|+++.+++. +.+ .+|+.
T Consensus 145 ~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~ 224 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEI 224 (555)
T ss_pred EEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccccCHHHHHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCE
Confidence 58999999999999999999999999999987542111 0111123 344667888865433 233 35654
Q ss_pred E----ecCE----EEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc--ccccHHHHHHHH
Q 037525 69 V----HADV----ILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV--IPFPLCEYQSKW 137 (182)
Q Consensus 69 ~----~~D~----vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~ 137 (182)
. ++|. ||+|+|+.|+..++.. .+.+++ +.+ ....++ ..+ .|++|.+|+.... ..+..+..|++.
T Consensus 225 ~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~--~l~l~~~G~I-~vd~~~-~Ts-~p~IyAaGDv~~~~~~~v~~A~~~G~~ 299 (555)
T TIGR03143 225 TEYKAPKDAGTFGVFVFVGYAPSSELFKG--VVELDKRGYI-PTNEDM-ETN-VPGVYAAGDLRPKELRQVVTAVADGAI 299 (555)
T ss_pred EEEeccccccceEEEEEeCCCCChhHHhh--hcccCCCCeE-EeCCcc-ccC-CCCEEEceeccCCCcchheeHHhhHHH
Confidence 3 3566 9999999999887764 233332 223 222222 224 6999999997521 123344444444
Q ss_pred HHHH
Q 037525 138 IAGV 141 (182)
Q Consensus 138 ia~~ 141 (182)
+|..
T Consensus 300 Aa~~ 303 (555)
T TIGR03143 300 AATS 303 (555)
T ss_pred HHHH
Confidence 4443
No 62
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.96 E-value=7.4e-09 Score=89.48 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=79.9
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccCCCCCCC----CCCC-----------CC--CeEEcceeEEeeC-CCe-
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSVADGTYE----KQPG-----------FD--NMWLHSMIESAHD-NGA- 60 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~~~~~~~----~~~~-----------~~--~i~~~~~v~~~~~-~~~- 60 (182)
+|+|||+|++|+|+|..+.+. +++|++..+........ ..+. .. ++.....++++.. ++.
T Consensus 283 ~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v 362 (471)
T PRK12810 283 HVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKV 362 (471)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEE
Confidence 589999999999999877765 56888665433111000 0000 01 2233445556642 222
Q ss_pred --EEE-----cCC---------cEEecCEEEEecccccCCC-CCCCCCceecCCCccccccccccCCCCCCCEEEEeccC
Q 037525 61 --VVF-----RNG---------HTVHADVILHCTGYKYHFP-FLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPW 123 (182)
Q Consensus 61 --v~~-----~dg---------~~~~~D~vi~atG~~~~~~-~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~ 123 (182)
|.+ .+| .++++|.||+|+|+.++.. ++.. .++.++...........+.++ .|++|.+|+..
T Consensus 363 ~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~-~gl~~~~~g~i~vd~~~~~Ts-~~gVfa~GD~~ 440 (471)
T PRK12810 363 TGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQ-FGVELDERGRVAAPDNAYQTS-NPKVFAAGDMR 440 (471)
T ss_pred EEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccc-cCcccCCCCCEEeCCCcccCC-CCCEEEccccC
Confidence 222 122 3579999999999999753 5543 234443222111211112234 69999999987
Q ss_pred Ccc-cccHHHHHHHH----HHHHHcCCCCCC
Q 037525 124 KVI-PFPLCEYQSKW----IAGVLSGQIVLP 149 (182)
Q Consensus 124 ~~~-~~~~~e~qa~~----ia~~l~g~~~lP 149 (182)
.+. ....+..|++. +.++|.|...+|
T Consensus 441 ~g~~~~~~Av~~G~~AA~~i~~~L~g~~~~~ 471 (471)
T PRK12810 441 RGQSLVVWAIAEGRQAARAIDAYLMGSTALP 471 (471)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 532 23334444444 555555655444
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.93 E-value=1e-08 Score=95.72 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=84.7
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccCCCCCCCCCC-----CCCCe--EEcceeEEee--CCC---eEEEc---
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSVADGTYEKQP-----GFDNM--WLHSMIESAH--DNG---AVVFR--- 64 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~~~~~~~~~~-----~~~~i--~~~~~v~~~~--~~~---~v~~~--- 64 (182)
+|+|||||++|+|+|..+.+. +++|++++|+....+..... ....| .....+.++. +++ +|.+.
T Consensus 573 ~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~ 652 (1006)
T PRK12775 573 SVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEME 652 (1006)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEE
Confidence 589999999999999998886 45799999875443221100 00122 2223333442 111 12221
Q ss_pred --------------CCc--EEecCEEEEecccccCCCCCCCCCceecCCC-ccccccc----cccCCCCCCCEEEEeccC
Q 037525 65 --------------NGH--TVHADVILHCTGYKYHFPFLETNGIVTMDDN-RVGPLYK----HVFPPVLAPWLSFVGLPW 123 (182)
Q Consensus 65 --------------dg~--~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~-~~~~ly~----~~~~~~~~p~l~~iG~~~ 123 (182)
+|+ ++++|.||+|+|+.++..++.....+.++.. .+ .... ..+.++ .|++|.+|+..
T Consensus 653 l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I-~vd~~~v~~~~~Ts-~pgVFAaGDv~ 730 (1006)
T PRK12775 653 LGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNI-AADDGKLESTQSTN-LPGVFAGGDIV 730 (1006)
T ss_pred ecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcE-EeCCCccccCcCCC-CCCEEEecCcC
Confidence 232 4799999999999999765543212333221 11 1111 122334 69999999986
Q ss_pred Cc-ccccHHH----HHHHHHHHHHcCCCCCCCHH
Q 037525 124 KV-IPFPLCE----YQSKWIAGVLSGQIVLPSQE 152 (182)
Q Consensus 124 ~~-~~~~~~e----~qa~~ia~~l~g~~~lP~~~ 152 (182)
.+ .....+. ..|..|.++|.+....|...
T Consensus 731 ~G~~~vv~Ai~~Gr~AA~~I~~~L~~~~~~~~~~ 764 (1006)
T PRK12775 731 TGGATVILAMGAGRRAARSIATYLRLGKKWPITA 764 (1006)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhcCCCcCCCc
Confidence 43 2333444 44555555666665555443
No 64
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.92 E-value=9.1e-09 Score=88.31 Aligned_cols=34 Identities=41% Similarity=0.586 Sum_probs=32.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD 34 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~ 34 (182)
+|+|||+|+||+|+|.+|++.+++|+++.|++.+
T Consensus 177 rV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 177 RVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred eEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 6999999999999999999999999999999865
No 65
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.90 E-value=3.8e-08 Score=88.31 Aligned_cols=140 Identities=18% Similarity=0.174 Sum_probs=81.2
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccCCCCCCCC------CCCCC-CeEEcceeEEee--CCC---eEEEc---
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSVADGTYEK------QPGFD-NMWLHSMIESAH--DNG---AVVFR--- 64 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~~~~~~~~------~~~~~-~i~~~~~v~~~~--~~~---~v~~~--- 64 (182)
+|+|||+|++|+|.|..+.+. +++|++++|+....++.. +...+ .+.....+.++. +++ +|.+.
T Consensus 470 ~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~ 549 (654)
T PRK12769 470 NVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTR 549 (654)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEE
Confidence 589999999999999887775 568999998754322110 00000 122233344442 111 12321
Q ss_pred ---------------CCc--EEecCEEEEecccccCC-CCCCCCCceecCCC-ccccccc--c-ccCCCCCCCEEEEecc
Q 037525 65 ---------------NGH--TVHADVILHCTGYKYHF-PFLETNGIVTMDDN-RVGPLYK--H-VFPPVLAPWLSFVGLP 122 (182)
Q Consensus 65 ---------------dg~--~~~~D~vi~atG~~~~~-~~l~~~~~~~~~~~-~~~~ly~--~-~~~~~~~p~l~~iG~~ 122 (182)
.|+ ++++|.||+|+|+.++. .++.. ..++++.. .+ .... + .+.++ .|++|..|+.
T Consensus 550 ~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~-~gl~~~~~G~i-~vd~~~~~~~~Ts-~~gVfAaGD~ 626 (654)
T PRK12769 550 LGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLES-HGVTVDKWGRI-IADVESQYRYQTS-NPKIFAGGDA 626 (654)
T ss_pred ecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccc-cCCcCCCCCCE-EeCCCcccCcccC-CCCEEEcCCc
Confidence 233 47999999999999974 45544 23444322 22 1110 0 12234 6999999998
Q ss_pred CCc-ccccHHHHHHHHHHHHHc
Q 037525 123 WKV-IPFPLCEYQSKWIAGVLS 143 (182)
Q Consensus 123 ~~~-~~~~~~e~qa~~ia~~l~ 143 (182)
..+ .....+..+++.+|..+.
T Consensus 627 ~~g~~~vv~Ai~~Gr~AA~~I~ 648 (654)
T PRK12769 627 VRGADLVVTAMAEGRHAAQGII 648 (654)
T ss_pred CCCCcHHHHHHHHHHHHHHHHH
Confidence 753 334566677777666554
No 66
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.88 E-value=4.9e-08 Score=84.35 Aligned_cols=141 Identities=16% Similarity=0.186 Sum_probs=82.5
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCCCCCCC------CCCCC-CeEEcceeEEeeC--CCe---EEEc---
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVADGTYEK------QPGFD-NMWLHSMIESAHD--NGA---VVFR--- 64 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~~~~~~------~~~~~-~i~~~~~v~~~~~--~~~---v~~~--- 64 (182)
+|+|||+|++|+|.|..+.+.. ++|++++|++...+... +...+ ++.....+.++.. ++. |++.
T Consensus 284 ~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~ 363 (467)
T TIGR01318 284 RVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTA 363 (467)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEE
Confidence 4899999999999999988865 68999998764322110 00000 2223334444431 111 2221
Q ss_pred ---------------CCc--EEecCEEEEecccccCC-CCCCCCCceecCC-Ccc--ccccccccCCCCCCCEEEEeccC
Q 037525 65 ---------------NGH--TVHADVILHCTGYKYHF-PFLETNGIVTMDD-NRV--GPLYKHVFPPVLAPWLSFVGLPW 123 (182)
Q Consensus 65 ---------------dg~--~~~~D~vi~atG~~~~~-~~l~~~~~~~~~~-~~~--~~ly~~~~~~~~~p~l~~iG~~~ 123 (182)
+|+ .+++|.||+|+|+.++. .++.. ..+.++. +.+ .+.|...+.++ .|++|.+|+..
T Consensus 364 ~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~-~gl~~~~~g~i~vd~~~~~~~~T~-~~gVfa~GD~~ 441 (467)
T TIGR01318 364 LGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAG-HGITLDSWGRIITGDVSYLPYQTT-NPKIFAGGDAV 441 (467)
T ss_pred ecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccc-cCccCCCCCCEEeCCccccCccCC-CCCEEEECCcC
Confidence 122 57899999999999974 45443 2233332 222 11121222334 69999999986
Q ss_pred Ccc-cccHHHHHHHHHHHHHc
Q 037525 124 KVI-PFPLCEYQSKWIAGVLS 143 (182)
Q Consensus 124 ~~~-~~~~~e~qa~~ia~~l~ 143 (182)
.+. ....+..+++.+|..+.
T Consensus 442 ~~~~~~~~Ai~~G~~aA~~i~ 462 (467)
T TIGR01318 442 RGADLVVTAVAEGRQAAQGIL 462 (467)
T ss_pred CCccHHHHHHHHHHHHHHHHH
Confidence 533 23567777777776654
No 67
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.87 E-value=8.2e-08 Score=83.35 Aligned_cols=146 Identities=15% Similarity=0.132 Sum_probs=79.4
Q ss_pred CEEEEcCCccHHHHHHHHhc-cCCeEEEEeccCCCCCC----CCCCCC-----------------C--CeEEcceeEEee
Q 037525 1 VIILVGSSASAVDICRDLAG-VAKEVHLVSRSVADGTY----EKQPGF-----------------D--NMWLHSMIESAH 56 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~-~a~~V~l~~r~~~~~~~----~~~~~~-----------------~--~i~~~~~v~~~~ 56 (182)
+|+|||+|++|+|.|..+.+ .+++|+++++.+..... ..+|.. + .+.....+.++.
T Consensus 285 ~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~ 364 (485)
T TIGR01317 285 KVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFI 364 (485)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEE
Confidence 58999999999999876666 56789999875432100 000000 0 111222333442
Q ss_pred CC--C---eEEE--------cCC---------c--EEecCEEEEecccc-cCCCCCCCCCceecCC-CccccccccccCC
Q 037525 57 DN--G---AVVF--------RNG---------H--TVHADVILHCTGYK-YHFPFLETNGIVTMDD-NRVGPLYKHVFPP 110 (182)
Q Consensus 57 ~~--~---~v~~--------~dg---------~--~~~~D~vi~atG~~-~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~ 110 (182)
.+ + ++.+ .+| + ++++|.||+|+|+. ++.+++... ++..+. +.+ ........+
T Consensus 365 ~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~-gl~~~~~G~i-~~~~~~~~T 442 (485)
T TIGR01317 365 GDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDF-GVKKTRRGNI-SAGYDDYST 442 (485)
T ss_pred EcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCcccccccc-CcccCCCCCE-EecCCCceE
Confidence 21 1 1221 123 2 57999999999996 777776643 333332 222 111112233
Q ss_pred CCCCCEEEEeccCCcc-cccHHHH----HHHHHHHHHcCCCCCC
Q 037525 111 VLAPWLSFVGLPWKVI-PFPLCEY----QSKWIAGVLSGQIVLP 149 (182)
Q Consensus 111 ~~~p~l~~iG~~~~~~-~~~~~e~----qa~~ia~~l~g~~~lP 149 (182)
+ .|++|.+|+...+. ....+.. .|..|.++|.|...+|
T Consensus 443 s-~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~~L~g~~~~~ 485 (485)
T TIGR01317 443 S-IPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDRYLMGSSVLP 485 (485)
T ss_pred C-CCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4 69999999986432 2233444 4445555566655544
No 68
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.87 E-value=2.1e-08 Score=88.45 Aligned_cols=143 Identities=16% Similarity=0.125 Sum_probs=83.4
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCCCCCCC------CCCC-CCeEEcceeEEeeCCC-e---E---EE--
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVADGTYEK------QPGF-DNMWLHSMIESAHDNG-A---V---VF-- 63 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~~~~~~------~~~~-~~i~~~~~v~~~~~~~-~---v---~~-- 63 (182)
+|+|||+|++|+|.+..+.+.. ++|++++|.+...+... .... -++.....+.++.+++ + + .+
T Consensus 269 ~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~ 348 (564)
T PRK12771 269 RVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEK 348 (564)
T ss_pred CEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEe
Confidence 5899999999999999888865 78999998754221110 0000 1233334455554211 1 1 11
Q ss_pred ----c-------CCc--EEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCCc-cccc
Q 037525 64 ----R-------NGH--TVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFP 129 (182)
Q Consensus 64 ----~-------dg~--~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~ 129 (182)
. +|+ ++++|.||+|+|+.++.+++.....+..+.+.+ ......+.++ .|++|.+|+...+ ....
T Consensus 349 ~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i-~vd~~~~~ts-~~~Vfa~GD~~~g~~~v~ 426 (564)
T PRK12771 349 MELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVV-QVDPNFMMTG-RPGVFAGGDMVPGPRTVT 426 (564)
T ss_pred cccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCE-EeCCCCccCC-CCCEEeccCcCCCchHHH
Confidence 1 232 578999999999999888876422333222222 2222233345 6999999998642 2344
Q ss_pred HHHHHHHHHH----HHHcCC
Q 037525 130 LCEYQSKWIA----GVLSGQ 145 (182)
Q Consensus 130 ~~e~qa~~ia----~~l~g~ 145 (182)
.+..|++.+| ++|.|.
T Consensus 427 ~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 427 TAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 4555555554 445554
No 69
>PRK13984 putative oxidoreductase; Provisional
Probab=98.85 E-value=2.6e-08 Score=88.50 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=77.1
Q ss_pred CEEEEcCCccHHHHHHHHhccC------CeEEEEeccCCC-CCCCCCCC-----CCCe--EEcceeEEeeC-CC---eEE
Q 037525 1 VIILVGSSASAVDICRDLAGVA------KEVHLVSRSVAD-GTYEKQPG-----FDNM--WLHSMIESAHD-NG---AVV 62 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a------~~V~l~~r~~~~-~~~~~~~~-----~~~i--~~~~~v~~~~~-~~---~v~ 62 (182)
+|+|||||++|+|+|..+++.+ .+|+++...... .+...... ...+ .....+.++.. ++ +|.
T Consensus 420 ~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~ 499 (604)
T PRK13984 420 SLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEGLEEGVVIYPGWGPMEVVIENDKVKGVK 499 (604)
T ss_pred cEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHHHHHHHHcCCEEEeCCCCEEEEccCCEEEEEE
Confidence 5899999999999999999864 368887532111 11100000 0112 22222223321 11 121
Q ss_pred Ec-----------------CC--cEEecCEEEEecccccCCCCCCCCC--ceecCCCccccccccccCCCCCCCEEEEec
Q 037525 63 FR-----------------NG--HTVHADVILHCTGYKYHFPFLETNG--IVTMDDNRVGPLYKHVFPPVLAPWLSFVGL 121 (182)
Q Consensus 63 ~~-----------------dg--~~~~~D~vi~atG~~~~~~~l~~~~--~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~ 121 (182)
+. +| .++++|.||+|+|+.++.+++.... .+..+.+.+ ..... +.++ .|++|.+|+
T Consensus 500 ~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i-~vd~~-~~Ts-~~gVfAaGD 576 (604)
T PRK13984 500 FKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRI-LTNEY-GQTS-IPWLFAGGD 576 (604)
T ss_pred EEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeE-EeCCC-CccC-CCCEEEecC
Confidence 11 12 3579999999999999988775321 122222322 12122 2234 699999999
Q ss_pred cCCcccccHHHHHHHHHHHHHc
Q 037525 122 PWKVIPFPLCEYQSKWIAGVLS 143 (182)
Q Consensus 122 ~~~~~~~~~~e~qa~~ia~~l~ 143 (182)
...+.....+..+++.+|..+.
T Consensus 577 ~~~~~~~v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 577 IVHGPDIIHGVADGYWAAEGID 598 (604)
T ss_pred cCCchHHHHHHHHHHHHHHHHH
Confidence 8754434455666666665543
No 70
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.8e-08 Score=81.65 Aligned_cols=118 Identities=15% Similarity=0.209 Sum_probs=78.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCC----CCCCCCCCeE--EcceeEEeeCC----CeEEEcC---Cc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTY----EKQPGFDNMW--LHSMIESAHDN----GAVVFRN---GH 67 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~----~~~~~~~~i~--~~~~v~~~~~~----~~v~~~d---g~ 67 (182)
||+||||||||+|.|.+|+..+++||+..=.+..... +++.+.+|+. .+..-+++.++ .++...| |+
T Consensus 356 ~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge 435 (520)
T COG3634 356 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGE 435 (520)
T ss_pred eEEEECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCc
Confidence 6999999999999999999999999998755444321 1222233443 34555667654 2455553 44
Q ss_pred E--EecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccC
Q 037525 68 T--VHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPW 123 (182)
Q Consensus 68 ~--~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~ 123 (182)
. ++.+.|++-+|.-|++.||... ++.+. +.+ -..++. ..+ .|++|..|++.
T Consensus 436 ~~~l~LeGvFVqIGL~PNT~WLkg~--vel~~rGEI-ivD~~g-~Ts-vpGvFAAGD~T 489 (520)
T COG3634 436 EHHLELEGVFVQIGLLPNTEWLKGA--VELNRRGEI-IVDARG-ETN-VPGVFAAGDCT 489 (520)
T ss_pred eeEEEeeeeEEEEecccChhHhhch--hhcCcCccE-EEecCC-CcC-CCceeecCccc
Confidence 3 5789999999999999999863 33322 222 122222 224 69999999886
No 71
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.69 E-value=2e-07 Score=83.53 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=79.0
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccCCCCCCCCCC-----CCC--CeEEcceeEEee--CCCe---EEE----
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSVADGTYEKQP-----GFD--NMWLHSMIESAH--DNGA---VVF---- 63 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~~~~~~~~~~-----~~~--~i~~~~~v~~~~--~~~~---v~~---- 63 (182)
+|+|||+|++|+|.|..+.+. +++|++++|+....++.... ... ++.....++++. +++. +.+
T Consensus 453 ~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~ 532 (639)
T PRK12809 453 RVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTA 532 (639)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEE
Confidence 489999999999999887664 57899999876443221100 001 222233344443 1111 111
Q ss_pred --------------cCCc--EEecCEEEEecccccCC-CCCCCCCceecCC-Ccc-cccc-ccccCCCCCCCEEEEeccC
Q 037525 64 --------------RNGH--TVHADVILHCTGYKYHF-PFLETNGIVTMDD-NRV-GPLY-KHVFPPVLAPWLSFVGLPW 123 (182)
Q Consensus 64 --------------~dg~--~~~~D~vi~atG~~~~~-~~l~~~~~~~~~~-~~~-~~ly-~~~~~~~~~p~l~~iG~~~ 123 (182)
..|+ .+++|.||+|+|+.++. .++.. ..++++. +.+ ..-+ ...+.++ .|++|..|+..
T Consensus 533 ~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~-~gl~~~~~G~i~vd~~~~~~~~Ts-~~gVfA~GD~~ 610 (639)
T PRK12809 533 MGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQG-SGIKLDKWGLIQTGDVGYLPTQTH-LKKVFAGGDAV 610 (639)
T ss_pred ecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccc-cCcccCCCCCEEeCCCcccCcccC-CCCEEEcCCCC
Confidence 1222 47899999999999863 45543 2333332 222 0111 1112234 69999999987
Q ss_pred Ccc-cccHHHHHHHHHHHHHc
Q 037525 124 KVI-PFPLCEYQSKWIAGVLS 143 (182)
Q Consensus 124 ~~~-~~~~~e~qa~~ia~~l~ 143 (182)
.+. ....+-.+++.+|..+.
T Consensus 611 ~g~~~vv~Ai~~Gr~AA~~i~ 631 (639)
T PRK12809 611 HGADLVVTAMAAGRQAARDML 631 (639)
T ss_pred CCchHHHHHHHHHHHHHHHHH
Confidence 533 33455566666655543
No 72
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.68 E-value=1.4e-07 Score=77.54 Aligned_cols=140 Identities=23% Similarity=0.261 Sum_probs=93.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC-CCCCC---------CCCCC-CeEEcceeEEeeC--CC--eEEEcC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD-GTYEK---------QPGFD-NMWLHSMIESAHD--NG--AVVFRN 65 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~-~~~~~---------~~~~~-~i~~~~~v~~~~~--~~--~v~~~d 65 (182)
|++|||+|+.|+|+|--++..+.+++++.|.+.. +.++. +.... +++....++++.+ ++ .+....
T Consensus 191 r~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~ 270 (478)
T KOG0405|consen 191 RVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSH 270 (478)
T ss_pred eEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEec
Confidence 6899999999999999999999999999998754 22211 11101 2333344444432 11 334456
Q ss_pred CcEEecCEEEEecccccCCCCCCCC-CceecCCCc-c-ccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHH
Q 037525 66 GHTVHADVILHCTGYKYHFPFLETN-GIVTMDDNR-V-GPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGV 141 (182)
Q Consensus 66 g~~~~~D~vi~atG~~~~~~~l~~~-~~~~~~~~~-~-~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~ 141 (182)
|+...+|.++||+|-.|++.-|.-+ .+++.+.+. + ..-|.++ + .|+++.+|+... ...-|.+-+.++.++.-
T Consensus 271 ~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T---n-vp~I~avGDv~gk~~LTPVAiaagr~la~r 346 (478)
T KOG0405|consen 271 GTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT---N-VPSIWAVGDVTGKINLTPVAIAAGRKLANR 346 (478)
T ss_pred cccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC---C-CCceEEeccccCcEecchHHHhhhhhHHHH
Confidence 6555699999999999987655432 234444332 2 3567776 4 799999999764 23457778888888877
Q ss_pred HcC
Q 037525 142 LSG 144 (182)
Q Consensus 142 l~g 144 (182)
+-|
T Consensus 347 lF~ 349 (478)
T KOG0405|consen 347 LFG 349 (478)
T ss_pred hhc
Confidence 755
No 73
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=98.65 E-value=4.2e-08 Score=86.96 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=95.6
Q ss_pred EEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCC------------CCCC-CeEEcceeEEeeCC---CeEEEcCC
Q 037525 3 ILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQ------------PGFD-NMWLHSMIESAHDN---GAVVFRNG 66 (182)
Q Consensus 3 ~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~------------~~~~-~i~~~~~v~~~~~~---~~v~~~dg 66 (182)
+|||||.-|+|.|.-|.+.+-+|++++-.+... ...+ +... ++.+....+++.++ .++.|+||
T Consensus 149 vVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM-erQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG 227 (793)
T COG1251 149 VVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM-ERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADG 227 (793)
T ss_pred EEEccchhhhHHHHHHHhCCCceEEEeecchHH-HHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCC
Confidence 799999999999999999999999998765321 1111 1111 23333333344321 37999999
Q ss_pred cEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccC--Cc---ccccHHHHHHHHHHHH
Q 037525 67 HTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPW--KV---IPFPLCEYQSKWIAGV 141 (182)
Q Consensus 67 ~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~--~~---~~~~~~e~qa~~ia~~ 141 (182)
+.+++|.||||+|++|+..+... .++.++.+.+...|.++ + +|++|.+|-+. .+ .....+-.|++.+|..
T Consensus 228 ~~i~ad~VV~a~GIrPn~ela~~-aGlavnrGIvvnd~mqT---s-dpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~h 302 (793)
T COG1251 228 TEIPADLVVMAVGIRPNDELAKE-AGLAVNRGIVVNDYMQT---S-DPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADH 302 (793)
T ss_pred CcccceeEEEecccccccHhHHh-cCcCcCCCeeecccccc---c-CCCeeehhhHHHhcCccceehhHHHHHHHHHHHH
Confidence 99999999999999999776543 45666665443444444 3 79999999775 22 2234556788999998
Q ss_pred HcCCC
Q 037525 142 LSGQI 146 (182)
Q Consensus 142 l~g~~ 146 (182)
+.+..
T Consensus 303 l~~~~ 307 (793)
T COG1251 303 LCGGE 307 (793)
T ss_pred hccCc
Confidence 88763
No 74
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.64 E-value=1.4e-07 Score=80.00 Aligned_cols=118 Identities=20% Similarity=0.263 Sum_probs=82.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC------------CCCC-CCeEEcceeEEeeCC--C---eEE
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK------------QPGF-DNMWLHSMIESAHDN--G---AVV 62 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~------------~~~~-~~i~~~~~v~~~~~~--~---~v~ 62 (182)
+|++||+|..|+|+|.+|...+++|+++++.+... .+. +... -++...+.+.++.++ + .|.
T Consensus 215 ~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~ 293 (478)
T KOG1336|consen 215 KVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-PRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVK 293 (478)
T ss_pred eEEEECchHHHHHHHHHHHhcCceEEEEccCccch-hhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEE
Confidence 48999999999999999999999999999875431 110 0000 133445667776542 1 367
Q ss_pred EcCCcEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccC
Q 037525 63 FRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPW 123 (182)
Q Consensus 63 ~~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~ 123 (182)
+.||+++++|.||+++|-+|+++++.....+. ..+.+ +.+.. |-.+ .||+|.+|+..
T Consensus 294 l~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~-~~G~i-~V~~~-f~t~-~~~VyAiGDva 350 (478)
T KOG1336|consen 294 LKDGKTLEADLVVVGIGIKPNTSFLEKGILLD-SKGGI-KVDEF-FQTS-VPNVYAIGDVA 350 (478)
T ss_pred eccCCEeccCeEEEeeccccccccccccceec-ccCCE-eehhc-eeec-cCCccccccee
Confidence 78999999999999999999999988522222 22222 33333 3334 69999999875
No 75
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.63 E-value=1.2e-07 Score=62.27 Aligned_cols=66 Identities=17% Similarity=0.316 Sum_probs=46.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCCC---------CCCC-CCeEEcceeEEeeCC-Ce--EEEcCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYEK---------QPGF-DNMWLHSMIESAHDN-GA--VVFRNG 66 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~~---------~~~~-~~i~~~~~v~~~~~~-~~--v~~~dg 66 (182)
+|+|||||++|+|+|..|++.+++|++++|++.+. .++. +... -++..+..++++.++ .+ |+|+||
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 58999999999999999999999999999988653 1100 0001 134455677777642 23 777776
No 76
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.49 E-value=1.4e-06 Score=69.98 Aligned_cols=87 Identities=15% Similarity=0.170 Sum_probs=59.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC---CCC---CCCCCCC--------------------C-CeEEcceeE
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA---DGT---YEKQPGF--------------------D-NMWLHSMIE 53 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~---~~~---~~~~~~~--------------------~-~i~~~~~v~ 53 (182)
+|+|||+|++|+..|..|++...+|+++.+.+. +.. ....|.. + ++.. ..+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 689999999999999999999889999997642 100 0001111 0 2222 4555
Q ss_pred EeeCCC---eEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525 54 SAHDNG---AVVFRNGHTVHADVILHCTGYKYHFPFLE 88 (182)
Q Consensus 54 ~~~~~~---~v~~~dg~~~~~D~vi~atG~~~~~~~l~ 88 (182)
+++.++ .+.+.+|.++.+|.+|+|||..+..+.++
T Consensus 81 ~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~ 118 (300)
T TIGR01292 81 KVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIP 118 (300)
T ss_pred EEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCC
Confidence 665432 35566777899999999999987655444
No 77
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.48 E-value=2.5e-07 Score=76.97 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=28.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCC--eEEEEeccCCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSVAD 34 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~~~ 34 (182)
+|+|||||.||+|++.+|.+... +|+++.|+..+
T Consensus 192 ~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 192 RVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp EEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred eEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 59999999999999999999653 89999998764
No 78
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.47 E-value=4.4e-07 Score=84.87 Aligned_cols=138 Identities=10% Similarity=0.127 Sum_probs=85.5
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCCCC--CCCCCCCC-CeEEcceeEEeeCCC---eEEEc----CCcEE
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVADGT--YEKQPGFD-NMWLHSMIESAHDNG---AVVFR----NGHTV 69 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~~~--~~~~~~~~-~i~~~~~v~~~~~~~---~v~~~----dg~~~ 69 (182)
+|+|||+|++|+|+|..|++.+ +.|+++.+++.... ...+...+ ++.....++++.+++ +|++. +++++
T Consensus 319 ~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i 398 (985)
T TIGR01372 319 RIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVSPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRL 398 (985)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchhHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEE
Confidence 5899999999999999999987 56888877643210 01111111 233455677776532 45665 34568
Q ss_pred ecCEEEEecccccCCCCCCCC-CceecCCCccccccccccCCCCCCCEEEEeccCCcccccHHHHHHHHHHHHHc
Q 037525 70 HADVILHCTGYKYHFPFLETN-GIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLS 143 (182)
Q Consensus 70 ~~D~vi~atG~~~~~~~l~~~-~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~ia~~l~ 143 (182)
++|.|++++|+.|+..++... +.+..++.. ..+.- ..+ .|++|.+|+.........+..+++.++..+.
T Consensus 399 ~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~--~~~~~--~t~-v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 399 EADALAVSGGWTPVVHLFSQRGGKLAWDAAI--AAFLP--GDA-VQGCILAGAANGLFGLAAALADGAAAGAAAA 468 (985)
T ss_pred ECCEEEEcCCcCchhHHHHhcCCCeeecccc--Cceec--CCC-CCCeEEeeccCCccCHHHHHHHHHHHHHHHH
Confidence 999999999999998776432 112222211 11111 123 5999999987754444556666666665553
No 79
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.26 E-value=5.3e-06 Score=69.11 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=61.8
Q ss_pred CEEEEcCCccHHHHHHHHhcc---CCeEEEEeccCCCCCCCCCCC--------------------CCCeE-EcceeEEee
Q 037525 1 VIILVGSSASAVDICRDLAGV---AKEVHLVSRSVADGTYEKQPG--------------------FDNMW-LHSMIESAH 56 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~---a~~V~l~~r~~~~~~~~~~~~--------------------~~~i~-~~~~v~~~~ 56 (182)
+|+|||||..|+..|..|.+. ..+|+++.++....+...++. ..++. ....+.+++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id 80 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGID 80 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEe
Confidence 699999999999999999643 357999998764321111110 01222 234566776
Q ss_pred C-CCeEEEcCCcEEecCEEEEecccccCCCCCCC
Q 037525 57 D-NGAVVFRNGHTVHADVILHCTGYKYHFPFLET 89 (182)
Q Consensus 57 ~-~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~ 89 (182)
. ++.|.+.+|+++++|.+|+|||..+..+.++.
T Consensus 81 ~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g 114 (364)
T TIGR03169 81 PDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEG 114 (364)
T ss_pred cccCEEEECCCCcccccEEEEccCCCCCCCCCCc
Confidence 3 24688889988999999999999988665543
No 80
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.22 E-value=7.9e-06 Score=68.33 Aligned_cols=143 Identities=14% Similarity=0.179 Sum_probs=94.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC--C-CC--------CCCCC-CeEEcceeEEeeCCCe------EE
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT--Y-EK--------QPGFD-NMWLHSMIESAHDNGA------VV 62 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~--~-~~--------~~~~~-~i~~~~~v~~~~~~~~------v~ 62 (182)
+|+|||+|..|+++|..+.+.+.+|+++...+.... . .. +..++ ++..+..+.++..+.. +.
T Consensus 138 ~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~ 217 (415)
T COG0446 138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVV 217 (415)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEE
Confidence 589999999999999999999999999998765421 1 11 11111 2334566667754321 46
Q ss_pred EcCCcEEecCEEEEecccccCCCCCCCCC-ceecCCCccccccccccCCCCCCCEEEEeccCC-----------cccccH
Q 037525 63 FRNGHTVHADVILHCTGYKYHFPFLETNG-IVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-----------VIPFPL 130 (182)
Q Consensus 63 ~~dg~~~~~D~vi~atG~~~~~~~l~~~~-~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-----------~~~~~~ 130 (182)
..++..+++|.+++++|.+++..+..... +....++.+ .....+.... .+++|.+|+... ...++.
T Consensus 218 ~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i-~v~~~~~~~~-~~~v~a~GD~~~~~~~~~~~~~~~~~~~~ 295 (415)
T COG0446 218 GIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAV-LVDERGGTSK-DPDVYAAGDVAEIPAAETGKGGRIALWAI 295 (415)
T ss_pred EeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCE-EEccccccCC-CCCEEeccceEeeecccCCceeeeechhh
Confidence 67788899999999999999844443321 122233333 3444444432 689999998541 123567
Q ss_pred HHHHHHHHHHHHcCC
Q 037525 131 CEYQSKWIAGVLSGQ 145 (182)
Q Consensus 131 ~e~qa~~ia~~l~g~ 145 (182)
+..|++.++..+.+.
T Consensus 296 a~~~~~i~~~~~~~~ 310 (415)
T COG0446 296 AVAAGRIAAENIAGA 310 (415)
T ss_pred HhhhhHHHHHHhccc
Confidence 788888888888764
No 81
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.21 E-value=1e-05 Score=69.13 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=59.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCC--------C------------CCCCeE-EcceeEEeeC-C
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQ--------P------------GFDNMW-LHSMIESAHD-N 58 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~--------~------------~~~~i~-~~~~v~~~~~-~ 58 (182)
+|+|||||..|+..|..|.+...+|+++.+++.+.+...+ . ...++. +...|+.++. +
T Consensus 12 ~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~Id~~~ 91 (424)
T PTZ00318 12 NVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYDVDFEE 91 (424)
T ss_pred eEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEEEEcCC
Confidence 5999999999999999997655579999887653211000 0 001122 3456777763 3
Q ss_pred CeEEE----------cCCcEEecCEEEEecccccCCCCCC
Q 037525 59 GAVVF----------RNGHTVHADVILHCTGYKYHFPFLE 88 (182)
Q Consensus 59 ~~v~~----------~dg~~~~~D~vi~atG~~~~~~~l~ 88 (182)
+.|.+ .+|.++++|.+|+|||..+..+-++
T Consensus 92 ~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ip 131 (424)
T PTZ00318 92 KRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIP 131 (424)
T ss_pred CEEEEecccccccccCCceEecCCEEEECCCcccCCCCCC
Confidence 46777 4566789999999999998755444
No 82
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.19 E-value=1.2e-05 Score=68.00 Aligned_cols=83 Identities=24% Similarity=0.238 Sum_probs=57.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCC--eEEEEeccCCCCCCC-CCC---------------C-----CCCeEE--cceeEEe
Q 037525 1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSVADGTYE-KQP---------------G-----FDNMWL--HSMIESA 55 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~~~~~~~-~~~---------------~-----~~~i~~--~~~v~~~ 55 (182)
+|+|||||+.|+..|..|++... +|+++.+.....+.. .++ . ..++.. ...|..+
T Consensus 5 ~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~~i 84 (396)
T PRK09754 5 TIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIKTL 84 (396)
T ss_pred cEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEEEE
Confidence 69999999999999999998654 689987764321100 000 0 012332 3456666
Q ss_pred eC-CCeEEEcCCcEEecCEEEEecccccC
Q 037525 56 HD-NGAVVFRNGHTVHADVILHCTGYKYH 83 (182)
Q Consensus 56 ~~-~~~v~~~dg~~~~~D~vi~atG~~~~ 83 (182)
+. +..+++.+|+.+.+|.+|+|||..+.
T Consensus 85 d~~~~~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 85 GRDTRELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred ECCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence 53 24678888988999999999999875
No 83
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.15 E-value=5.6e-05 Score=63.49 Aligned_cols=149 Identities=24% Similarity=0.380 Sum_probs=83.6
Q ss_pred EEEEcCCccHHHHHHHHhccC----CeEEEEeccCCCCCCCC------------------CCC-------------C---
Q 037525 2 IILVGSSASAVDICRDLAGVA----KEVHLVSRSVADGTYEK------------------QPG-------------F--- 43 (182)
Q Consensus 2 V~VVG~G~sg~d~A~~l~~~a----~~V~l~~r~~~~~~~~~------------------~~~-------------~--- 43 (182)
|+|||+|-||+|+-.+|.... .++.|+.|+..+...+. ++. +
T Consensus 190 V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI 269 (436)
T COG3486 190 VTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGI 269 (436)
T ss_pred EEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCcccccc
Confidence 899999999999999998742 35888999876531110 110 0
Q ss_pred ---------------------CCeEE--cceeEEeeC--CCeEEE--c---CC--cEEecCEEEEecccccCCC-CCCCC
Q 037525 44 ---------------------DNMWL--HSMIESAHD--NGAVVF--R---NG--HTVHADVILHCTGYKYHFP-FLETN 90 (182)
Q Consensus 44 ---------------------~~i~~--~~~v~~~~~--~~~v~~--~---dg--~~~~~D~vi~atG~~~~~~-~l~~~ 90 (182)
+++.+ ...|..++. ++.+.+ . +| +++++|+||+||||+...| |++.-
T Consensus 270 ~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l 349 (436)
T COG3486 270 SFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGL 349 (436)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhH
Confidence 12222 234445542 222333 2 23 3568999999999997766 66542
Q ss_pred C-ceecCCC---cccccccccc-CCCCCCCEEEEeccCC-----cccccHHHHHHHHHHHHHcCCCCCCCH
Q 037525 91 G-IVTMDDN---RVGPLYKHVF-PPVLAPWLSFVGLPWK-----VIPFPLCEYQSKWIAGVLSGQIVLPSQ 151 (182)
Q Consensus 91 ~-~~~~~~~---~~~~ly~~~~-~~~~~p~l~~iG~~~~-----~~~~~~~e~qa~~ia~~l~g~~~lP~~ 151 (182)
. .+..++. .+.+-|.-.. .+. .-.+|.-|.... .+.+.++-.-|..|++-+.|..+-|..
T Consensus 350 ~d~l~~d~~g~l~I~~dY~v~~~~~~-~~~ifvqn~e~htHGig~pdLsl~a~Raa~I~~~L~g~~~~~~~ 419 (436)
T COG3486 350 ADRLQWDDDGRLVIGRDYRVLWDGPG-KGRIFVQNAELHTHGIGAPDLSLGAWRAAVILNSLLGREKYPVP 419 (436)
T ss_pred HHhhcccccCCeEecCceeeecCCCC-cceEEEecccccccccCCccchHHHHHHHHHHHHHhCcCCCCCc
Confidence 1 1222211 1212232211 111 124666665431 134567777788888888888765543
No 84
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.14 E-value=1.7e-05 Score=67.90 Aligned_cols=88 Identities=15% Similarity=0.208 Sum_probs=59.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCC--eEEEEeccCCCCC-----C----CCCC--C-----------CCCe--EEcceeEE
Q 037525 1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSVADGT-----Y----EKQP--G-----------FDNM--WLHSMIES 54 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~~~~~-----~----~~~~--~-----------~~~i--~~~~~v~~ 54 (182)
+|+|||+|++|+..|..|++... +|+++.+++.+.+ + .... . ..++ .....+.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~ 81 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK 81 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence 69999999999999999998643 7999998764310 0 0000 0 0122 33456777
Q ss_pred eeC-CCeEEEcC---CcEEe--cCEEEEecccccCCCCCC
Q 037525 55 AHD-NGAVVFRN---GHTVH--ADVILHCTGYKYHFPFLE 88 (182)
Q Consensus 55 ~~~-~~~v~~~d---g~~~~--~D~vi~atG~~~~~~~l~ 88 (182)
++. ++.+.+.+ |+.++ +|.+|+|||.++..+-++
T Consensus 82 id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~ 121 (444)
T PRK09564 82 VDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIK 121 (444)
T ss_pred EECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCC
Confidence 753 34677654 55666 999999999988755443
No 85
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.06 E-value=7.2e-05 Score=65.11 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhcc---------------------CCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGV---------------------AKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~---------------------a~~V~l~~r~~~ 33 (182)
+|+|||+|+.|+|+|..|++. +++|++++|+.+
T Consensus 168 ~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~ 221 (491)
T PLN02852 168 TAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGP 221 (491)
T ss_pred EEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCCh
Confidence 589999999999999998763 678999999875
No 86
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.06 E-value=3.2e-05 Score=64.89 Aligned_cols=87 Identities=16% Similarity=0.247 Sum_probs=57.0
Q ss_pred CEEEEcCCccHHHHHHHHhccC--CeEEEEeccCCCCCCCC-C---------------CC------CCCeE--EcceeEE
Q 037525 1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSVADGTYEK-Q---------------PG------FDNMW--LHSMIES 54 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~~~~~~~~-~---------------~~------~~~i~--~~~~v~~ 54 (182)
+|+|||+|..|+.+|..|.+.. .+|+++.+.+...+... + .. ..++. .+..|.+
T Consensus 4 ~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~ 83 (377)
T PRK04965 4 GIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVTD 83 (377)
T ss_pred CEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEEE
Confidence 5899999999999999998743 36888887653211000 0 00 01233 2456777
Q ss_pred eeCCC-eEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525 55 AHDNG-AVVFRNGHTVHADVILHCTGYKYHFPFLE 88 (182)
Q Consensus 55 ~~~~~-~v~~~dg~~~~~D~vi~atG~~~~~~~l~ 88 (182)
++.+. .+. .+|..+++|.+|+|||..+..+-++
T Consensus 84 id~~~~~v~-~~~~~~~yd~LVlATG~~~~~p~i~ 117 (377)
T PRK04965 84 IDAEAQVVK-SQGNQWQYDKLVLATGASAFVPPIP 117 (377)
T ss_pred EECCCCEEE-ECCeEEeCCEEEECCCCCCCCCCCC
Confidence 76433 344 4677889999999999987655444
No 87
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.05 E-value=2.8e-05 Score=65.85 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=64.0
Q ss_pred CEEEEcCCccHHHHHHHHhccC--CeEEEEeccCCCCCCCCCC---------------------CCCCeEE-cceeEEee
Q 037525 1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSVADGTYEKQP---------------------GFDNMWL-HSMIESAH 56 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~~~~~~~~~~---------------------~~~~i~~-~~~v~~~~ 56 (182)
+|+|||||..|+..|..|.+.- .+|+|+.|+..+.+...++ +..++.. ...|+.|+
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID 84 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVTDID 84 (405)
T ss_pred eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEEEEc
Confidence 6999999999999999999964 6799999987543211110 0112433 24677776
Q ss_pred C-CCeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525 57 D-NGAVVFRNGHTVHADVILHCTGYKYHFPFLE 88 (182)
Q Consensus 57 ~-~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~ 88 (182)
. .+.|+++++..+++|.+|+|+|..+++.-.+
T Consensus 85 ~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~ 117 (405)
T COG1252 85 RDAKKVTLADLGEISYDYLVVALGSETNYFGIP 117 (405)
T ss_pred ccCCEEEeCCCccccccEEEEecCCcCCcCCCC
Confidence 3 3579999977899999999999999854443
No 88
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.04 E-value=3e-05 Score=66.47 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=58.1
Q ss_pred CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCC---------CC-------CC-------CCCCe--EEcceeE
Q 037525 1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTY---------EK-------QP-------GFDNM--WLHSMIE 53 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~---------~~-------~~-------~~~~i--~~~~~v~ 53 (182)
+|+|||||..|+..|..|.+. ..+|+|+.+.+.+.+. +. ++ ...++ .....|.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V~ 82 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEVI 82 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEEE
Confidence 699999999999999999875 3479999987543211 00 00 00122 2345677
Q ss_pred EeeCC-CeEEEcCC---c--EEecCEEEEecccccCCCCC
Q 037525 54 SAHDN-GAVVFRNG---H--TVHADVILHCTGYKYHFPFL 87 (182)
Q Consensus 54 ~~~~~-~~v~~~dg---~--~~~~D~vi~atG~~~~~~~l 87 (182)
+++.+ +.|.+.++ + ++++|.+|+|||.++..+-+
T Consensus 83 ~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~ 122 (438)
T PRK13512 83 AINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGF 122 (438)
T ss_pred EEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCC
Confidence 77643 46777653 2 25789999999999875443
No 89
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.92 E-value=0.0001 Score=63.11 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=29.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|+.|+..|..+++...+|+++.+++
T Consensus 5 dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 5 DLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 58999999999999999999999999999864
No 90
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.92 E-value=0.0001 Score=64.62 Aligned_cols=87 Identities=14% Similarity=0.208 Sum_probs=57.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC--CCC-CC--CC---CCC----------------C-CCeEEcceeEEe
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV--ADG-TY--EK---QPG----------------F-DNMWLHSMIESA 55 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~--~~~-~~--~~---~~~----------------~-~~i~~~~~v~~~ 55 (182)
+|+|||||+.|+..|..+++.+.+|+++..+. .+. .. .. .+. + -++.....|.++
T Consensus 214 dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I 293 (515)
T TIGR03140 214 DVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAKKI 293 (515)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEEEE
Confidence 58999999999999999999999999986421 110 00 00 000 0 022234556666
Q ss_pred eCCC---eEEEcCCcEEecCEEEEecccccCCCCC
Q 037525 56 HDNG---AVVFRNGHTVHADVILHCTGYKYHFPFL 87 (182)
Q Consensus 56 ~~~~---~v~~~dg~~~~~D~vi~atG~~~~~~~l 87 (182)
..+. .+.+.+|+.+.+|.+|+|||..+..+-+
T Consensus 294 ~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~i 328 (515)
T TIGR03140 294 ETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGV 328 (515)
T ss_pred EecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCC
Confidence 4321 4566678889999999999998654333
No 91
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.90 E-value=9.4e-05 Score=64.79 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=56.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC--CCC-CC--CCCCC-------------------CC-CeEEcceeEEe
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV--ADG-TY--EKQPG-------------------FD-NMWLHSMIESA 55 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~--~~~-~~--~~~~~-------------------~~-~i~~~~~v~~~ 55 (182)
+|+|||||++|+..|.++++.+.+|.++.++. .+. .. ..++. ++ .+.....+..+
T Consensus 213 dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I 292 (517)
T PRK15317 213 DVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKL 292 (517)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 58999999999999999999999999986531 110 00 00000 00 12223456666
Q ss_pred eCC---CeEEEcCCcEEecCEEEEecccccCCC
Q 037525 56 HDN---GAVVFRNGHTVHADVILHCTGYKYHFP 85 (182)
Q Consensus 56 ~~~---~~v~~~dg~~~~~D~vi~atG~~~~~~ 85 (182)
..+ ..|.+.+|+.+.+|.||+|||..+..+
T Consensus 293 ~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~ 325 (517)
T PRK15317 293 EPAAGLIEVELANGAVLKAKTVILATGARWRNM 325 (517)
T ss_pred EecCCeEEEEECCCCEEEcCEEEECCCCCcCCC
Confidence 532 145667788889999999999977543
No 92
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.87 E-value=8.6e-05 Score=68.21 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=60.3
Q ss_pred EEEEcCCccHHHHHHHHhccC---CeEEEEeccCCCCCC-----CCCCC----------------CCCeE--EcceeEEe
Q 037525 2 IILVGSSASAVDICRDLAGVA---KEVHLVSRSVADGTY-----EKQPG----------------FDNMW--LHSMIESA 55 (182)
Q Consensus 2 V~VVG~G~sg~d~A~~l~~~a---~~V~l~~r~~~~~~~-----~~~~~----------------~~~i~--~~~~v~~~ 55 (182)
|+|||+|..|+..|..|.+.. .+|+++.+.+...+. ..+.+ ..++. ....|+++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 689999999999999998754 379999877543210 00000 01333 34567777
Q ss_pred eCC-CeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525 56 HDN-GAVVFRNGHTVHADVILHCTGYKYHFPFLE 88 (182)
Q Consensus 56 ~~~-~~v~~~dg~~~~~D~vi~atG~~~~~~~l~ 88 (182)
+.+ ..|++.+|+++++|.+|+|||..+..+.++
T Consensus 81 d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ip 114 (785)
T TIGR02374 81 DTDQKQVITDAGRTLSYDKLILATGSYPFILPIP 114 (785)
T ss_pred ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCC
Confidence 643 468888898899999999999987655444
No 93
>PRK06116 glutathione reductase; Validated
Probab=97.84 E-value=0.00014 Score=62.46 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|+.|+..|..+++.+.+|.++.+.
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4899999999999999999999999999975
No 94
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.80 E-value=0.0001 Score=62.26 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=25.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEe
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVS 29 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~ 29 (182)
+|+|||||.+|+|.|..+++.+.+|.|+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence 58999999999999999999999999994
No 95
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.80 E-value=0.00016 Score=66.96 Aligned_cols=88 Identities=13% Similarity=0.107 Sum_probs=59.4
Q ss_pred CEEEEcCCccHHHHHHHHhccC----CeEEEEeccCCCCCCC-----CCCC---------------CCCeE--EcceeEE
Q 037525 1 VIILVGSSASAVDICRDLAGVA----KEVHLVSRSVADGTYE-----KQPG---------------FDNMW--LHSMIES 54 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a----~~V~l~~r~~~~~~~~-----~~~~---------------~~~i~--~~~~v~~ 54 (182)
+|+|||+|..|+..|..|.+.. .+|+++.+.+...+.. .+.. ..++. ....+.+
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~~ 84 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAIT 84 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEEE
Confidence 6999999999999999997642 4799998765432100 0000 01333 2345666
Q ss_pred eeCC-CeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525 55 AHDN-GAVVFRNGHTVHADVILHCTGYKYHFPFLE 88 (182)
Q Consensus 55 ~~~~-~~v~~~dg~~~~~D~vi~atG~~~~~~~l~ 88 (182)
++.+ ..|.+.+|+.+.+|.+|+|||..+..+.++
T Consensus 85 Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ip 119 (847)
T PRK14989 85 INRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK 119 (847)
T ss_pred EeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCC
Confidence 7543 356777888899999999999987655444
No 96
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.78 E-value=0.00022 Score=59.98 Aligned_cols=81 Identities=17% Similarity=0.294 Sum_probs=57.3
Q ss_pred CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCC------CC----C-----CC---------------CC------
Q 037525 1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADG------TY----E-----KQ---------------PG------ 42 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~------~~----~-----~~---------------~~------ 42 (182)
+|+|||+|.+|..+|..|++. ..+|.++.+.+... .. . .+ +.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 589999999999999999986 77899998865210 00 0 00 00
Q ss_pred --C-----------------CCeEEcceeEEeeCCCeEEEcCCcEEecCEEEEeccccc
Q 037525 43 --F-----------------DNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTGYKY 82 (182)
Q Consensus 43 --~-----------------~~i~~~~~v~~~~~~~~v~~~dg~~~~~D~vi~atG~~~ 82 (182)
+ ..+.....|.++.+ +++++.||+++.+|.||.|.|..+
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~-~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA-DGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC-CEEEECCCCEEEeeEEEECCCCCC
Confidence 0 01333456666655 368888999999999999999664
No 97
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.76 E-value=0.00063 Score=58.62 Aligned_cols=32 Identities=9% Similarity=0.177 Sum_probs=28.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCe-EEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKE-VHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~-V~l~~r~~ 32 (182)
+|+|||+|.||+=.|..|.+.+.. +.++++++
T Consensus 10 ~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 10 DVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 599999999999999999998766 88888875
No 98
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.75 E-value=0.00016 Score=62.00 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||+.|+..|..+++...+|.++.+.+
T Consensus 5 DvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 5 QAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 58999999999999999999999999999864
No 99
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.75 E-value=0.00026 Score=61.03 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=29.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|+.|...|..+++.+++|.++.+.
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 4 DYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 5899999999999999999999999999985
No 100
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.75 E-value=0.00025 Score=60.96 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=29.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|+.|+..|..+++.+++|.|+.+.
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 5899999999999999999999999999874
No 101
>PRK10262 thioredoxin reductase; Provisional
Probab=97.73 E-value=0.0003 Score=57.69 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=27.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSR 30 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r 30 (182)
+|+|||+|++|+..|..+++...+|.++..
T Consensus 8 ~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~ 37 (321)
T PRK10262 8 KLLILGSGPAGYTAAVYAARANLQPVLITG 37 (321)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCeEEEEe
Confidence 589999999999999999998888888864
No 102
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.67 E-value=0.0002 Score=60.16 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=30.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||||++|+=.|..+++.+.+|.++.+.+.
T Consensus 5 dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k 37 (408)
T COG2081 5 DVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPK 37 (408)
T ss_pred eEEEECCCHHHHHHHHHHhhcCCEEEEEecCcc
Confidence 589999999999999999999999999998764
No 103
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.66 E-value=0.00036 Score=58.47 Aligned_cols=142 Identities=17% Similarity=0.160 Sum_probs=90.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCC--------CCCCCC--CeEEcceeEEeeC--CCe--EEEc-
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYE--------KQPGFD--NMWLHSMIESAHD--NGA--VVFR- 64 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~--------~~~~~~--~i~~~~~v~~~~~--~~~--v~~~- 64 (182)
+.+|||+|..|+|++.-..+.+.+||++.--+..- .++ ++.... ++.+.+++...+. ++. |.+.
T Consensus 213 ~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ 292 (506)
T KOG1335|consen 213 KLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVEN 292 (506)
T ss_pred eEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEe
Confidence 46899999999999999999999999997544321 011 000011 3445667766653 223 3343
Q ss_pred --CCc--EEecCEEEEecccccCCCCCCCC-CceecC-CCccccccccccCCCCCCCEEEEeccCCcc-cccHHHHHHHH
Q 037525 65 --NGH--TVHADVILHCTGYKYHFPFLETN-GIVTMD-DNRVGPLYKHVFPPVLAPWLSFVGLPWKVI-PFPLCEYQSKW 137 (182)
Q Consensus 65 --dg~--~~~~D~vi~atG~~~~~~~l~~~-~~~~~~-~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~ 137 (182)
+|+ ++++|++.+|+|-+|=+.=|.-+ .++..+ .+++ +. ..-|... .|++|.+|+...++ ...-+|.|+..
T Consensus 293 ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv-~v-~~~f~t~-vP~i~~IGDv~~gpMLAhkAeeegI~ 369 (506)
T KOG1335|consen 293 AKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRV-IV-NTRFQTK-VPHIYAIGDVTLGPMLAHKAEEEGIA 369 (506)
T ss_pred cCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccce-ec-ccccccc-CCceEEecccCCcchhhhhhhhhchh
Confidence 343 47999999999987644333221 122222 1222 22 2224445 79999999987544 45688999999
Q ss_pred HHHHHcCC
Q 037525 138 IAGVLSGQ 145 (182)
Q Consensus 138 ia~~l~g~ 145 (182)
+...++|.
T Consensus 370 ~VE~i~g~ 377 (506)
T KOG1335|consen 370 AVEGIAGG 377 (506)
T ss_pred heeeeccc
Confidence 99999877
No 104
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.66 E-value=0.00026 Score=53.77 Aligned_cols=31 Identities=13% Similarity=0.307 Sum_probs=24.4
Q ss_pred EEEcCCccHHHHHHHHhccCCe-EEEEeccCC
Q 037525 3 ILVGSSASAVDICRDLAGVAKE-VHLVSRSVA 33 (182)
Q Consensus 3 ~VVG~G~sg~d~A~~l~~~a~~-V~l~~r~~~ 33 (182)
+|||+|++|+-.|..|.+...+ |.+++|++.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~ 32 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDR 32 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence 6999999999999999998877 999998743
No 105
>PRK14694 putative mercuric reductase; Provisional
Probab=97.61 E-value=0.00065 Score=58.77 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=29.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|++|.-.|..|++.+.+|.++.+..
T Consensus 8 dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 8 HIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 58999999999999999999999999999753
No 106
>PRK06370 mercuric reductase; Validated
Probab=97.61 E-value=0.0003 Score=60.66 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=29.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|+.|...|..+++.+++|.++.+.
T Consensus 7 DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 37 (463)
T PRK06370 7 DAIVIGAGQAGPPLAARAAGLGMKVALIERG 37 (463)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 5899999999999999999999999999975
No 107
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00063 Score=55.83 Aligned_cols=87 Identities=17% Similarity=0.225 Sum_probs=54.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCe-EEEEeccCCC---CC---CCCCCCCC-------------------CeEE-cceeE
Q 037525 1 VIILVGSSASAVDICRDLAGVAKE-VHLVSRSVAD---GT---YEKQPGFD-------------------NMWL-HSMIE 53 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~-V~l~~r~~~~---~~---~~~~~~~~-------------------~i~~-~~~v~ 53 (182)
+|+|||+|+.|+-.|..+++...+ +.+.....+- .. .+..|+.+ .+.. ...+.
T Consensus 5 DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~~v~ 84 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVEDEVE 84 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEEEEEE
Confidence 589999999999999999998866 5555443211 00 11112111 1111 23455
Q ss_pred EeeCCC---eEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525 54 SAHDNG---AVVFRNGHTVHADVILHCTGYKYHFPFLE 88 (182)
Q Consensus 54 ~~~~~~---~v~~~dg~~~~~D~vi~atG~~~~~~~l~ 88 (182)
++...+ .|...+|+ +.++.||+|||..+..+-++
T Consensus 85 ~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~ 121 (305)
T COG0492 85 KVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVP 121 (305)
T ss_pred EEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCC
Confidence 555443 45556776 89999999999988755444
No 108
>PTZ00058 glutathione reductase; Provisional
Probab=97.56 E-value=0.00098 Score=59.08 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|+.|.-.|..+++.+++|.++.+.
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 5899999999999999999999999999975
No 109
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.54 E-value=0.00074 Score=58.14 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|++|+..|..+++.+++|.++.+++
T Consensus 7 DvvVIGaGpaG~~aA~~la~~G~~v~liE~~~ 38 (461)
T PRK05249 7 DLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR 38 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 58999999999999999999999999999853
No 110
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.54 E-value=0.00026 Score=66.18 Aligned_cols=77 Identities=19% Similarity=0.080 Sum_probs=50.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC---CCCCCCCC----------------CeEEcceeEEeeCCCeE
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT---YEKQPGFD----------------NMWLHSMIESAHDNGAV 61 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~---~~~~~~~~----------------~i~~~~~v~~~~~~~~v 61 (182)
+|+|||+|++|+-.|..|++.+.+|+++.+.+..-. +. +|.+. .+.....+ .+ + ..+
T Consensus 308 kVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG-IP~~rlp~~vi~~~i~~l~~~Gv~f~~n~-~v-G-~di 383 (944)
T PRK12779 308 PIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG-IPEFRLPNQLIDDVVEKIKLLGGRFVKNF-VV-G-KTA 383 (944)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc-CCCCcChHHHHHHHHHHHHhhcCeEEEeE-Ee-c-cEE
Confidence 699999999999999999999999999998653211 11 22211 01111100 11 1 245
Q ss_pred EEcCCcEEecCEEEEecccc
Q 037525 62 VFRNGHTVHADVILHCTGYK 81 (182)
Q Consensus 62 ~~~dg~~~~~D~vi~atG~~ 81 (182)
++++.....+|+||+|||..
T Consensus 384 t~~~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 384 TLEDLKAAGFWKIFVGTGAG 403 (944)
T ss_pred eHHHhccccCCEEEEeCCCC
Confidence 55555455799999999985
No 111
>PLN02463 lycopene beta cyclase
Probab=97.54 E-value=0.00047 Score=59.46 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||++|.-+|..|++.+.+|.++.+.+
T Consensus 30 DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 58999999999999999999888999998754
No 112
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.54 E-value=0.00095 Score=57.80 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|+||+-.|..|.+.+.+|+++.+++
T Consensus 12 ~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~ 43 (461)
T PLN02172 12 HVAVIGAGAAGLVAARELRREGHTVVVFEREK 43 (461)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence 69999999999999999999888999999864
No 113
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.54 E-value=0.00012 Score=59.90 Aligned_cols=88 Identities=14% Similarity=0.303 Sum_probs=63.7
Q ss_pred CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCC-C-----C----C-----------CCCCCCeEEcceeEEeeC
Q 037525 1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGT-Y-----E----K-----------QPGFDNMWLHSMIESAHD 57 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~-~-----~----~-----------~~~~~~i~~~~~v~~~~~ 57 (182)
+|||||||.-|+-+|..+.+. ..+|-++...+..-. + + . +|. +..+++.+|+++++
T Consensus 41 kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~-~a~wi~ekv~~f~P 119 (446)
T KOG3851|consen 41 KVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPK-GATWIKEKVKEFNP 119 (446)
T ss_pred EEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccC-CcHHHHHHHHhcCC
Confidence 489999999999999999983 346777776543210 0 0 0 111 12345567788875
Q ss_pred C-CeEEEcCCcEEecCEEEEecccccCCCCCCC
Q 037525 58 N-GAVVFRNGHTVHADVILHCTGYKYHFPFLET 89 (182)
Q Consensus 58 ~-~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~ 89 (182)
+ +.|.+.+|++|..|..|+|+|...++.-+..
T Consensus 120 ~~N~v~t~gg~eIsYdylviA~Giql~y~~IkG 152 (446)
T KOG3851|consen 120 DKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKG 152 (446)
T ss_pred CcCeEEccCCcEEeeeeEeeeeeceeccchhcC
Confidence 3 4899999999999999999999998876654
No 114
>PRK06753 hypothetical protein; Provisional
Probab=97.53 E-value=0.00069 Score=56.44 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=30.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||||++|.=.|..|++.+.+|++++|++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 599999999999999999999999999998764
No 115
>PRK06847 hypothetical protein; Provisional
Probab=97.51 E-value=0.00063 Score=56.66 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=29.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||||++|+-.|..|++.+-+|+++.+.+.
T Consensus 6 ~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 599999999999999999998889999987653
No 116
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.50 E-value=0.00076 Score=58.47 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|+.|...|..+++.+.+|.++.+++
T Consensus 6 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 6 QVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 58999999999999999999999999999864
No 117
>PRK07236 hypothetical protein; Provisional
Probab=97.46 E-value=0.001 Score=55.91 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=29.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||++|+-+|..|++.+-+|+++.|.+
T Consensus 8 ~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 8 RAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 59999999999999999999999999999875
No 118
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.46 E-value=0.00028 Score=59.79 Aligned_cols=94 Identities=17% Similarity=0.268 Sum_probs=60.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCC----eEEEEeccCCCCCCCCCCCC-----------C--CeEEcceeEEee---CCCe
Q 037525 1 VIILVGSSASAVDICRDLAGVAK----EVHLVSRSVADGTYEKQPGF-----------D--NMWLHSMIESAH---DNGA 60 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~----~V~l~~r~~~~~~~~~~~~~-----------~--~i~~~~~v~~~~---~~~~ 60 (182)
.|.|||+|..|-|+|+.|.+... +|+-+.... ..+...+|.| . .+..+..|+++. .+-.
T Consensus 349 siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek-~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~ 427 (659)
T KOG1346|consen 349 SITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK-YNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLV 427 (659)
T ss_pred eEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc-CChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceE
Confidence 37899999999999999998543 566554321 1112223332 1 122233444432 1224
Q ss_pred EEEcCCcEEecCEEEEecccccCCCCCCCCCceecC
Q 037525 61 VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMD 96 (182)
Q Consensus 61 v~~~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~ 96 (182)
+.+.||+++..|.||.|+|-.|+.++... .+++++
T Consensus 428 lkL~dG~~l~tD~vVvavG~ePN~ela~~-sgLeiD 462 (659)
T KOG1346|consen 428 LKLSDGSELRTDLVVVAVGEEPNSELAEA-SGLEID 462 (659)
T ss_pred EEecCCCeeeeeeEEEEecCCCchhhccc-ccceee
Confidence 67789999999999999999999887665 345543
No 119
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.45 E-value=0.001 Score=55.99 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=29.1
Q ss_pred CEEEEcCCccHHHHHHHH--hccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDL--AGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l--~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|.-+|..| ++...+|.++++.+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 589999999999999999 777889999987643
No 120
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.43 E-value=0.00048 Score=64.47 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=30.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+..|..|++.+.+|+++.+.+.
T Consensus 541 kVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 541 KVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 699999999999999999999999999997654
No 121
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.42 E-value=0.0011 Score=57.13 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|+.|...|..+++..++|.++.+.
T Consensus 2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~ 32 (463)
T TIGR02053 2 DLVIIGSGAAAFAAAIKAAELGASVAMVERG 32 (463)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5899999999999999999999999999975
No 122
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.41 E-value=0.00019 Score=62.57 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=29.5
Q ss_pred CEEEEcCCccHHHHHHHHhc--cCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAG--VAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~--~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+..|..|++ ...+|+++.+.+.
T Consensus 28 ~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 28 HVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred cEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 69999999999999999986 5778999998764
No 123
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.40 E-value=0.0016 Score=57.71 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=54.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC---CCC---CCCCCCC------------------CeE-EcceeEEe
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD---GTY---EKQPGFD------------------NMW-LHSMIESA 55 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~---~~~---~~~~~~~------------------~i~-~~~~v~~~ 55 (182)
+|+|||||++|+..|..+++...+|+++.+...- ... ...|... ++. ....+..+
T Consensus 6 DVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~V~~i 85 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAEVLDV 85 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccEEEEE
Confidence 5899999999999999999988899999875321 000 0011100 122 12344455
Q ss_pred eCCC---eEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525 56 HDNG---AVVFRNGHTVHADVILHCTGYKYHFPFLE 88 (182)
Q Consensus 56 ~~~~---~v~~~dg~~~~~D~vi~atG~~~~~~~l~ 88 (182)
..++ .+...+| .+.+|.||+|||..+..+-++
T Consensus 86 ~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ip 120 (555)
T TIGR03143 86 DFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFP 120 (555)
T ss_pred EecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCC
Confidence 4221 2444445 578899999999987654443
No 124
>PLN02546 glutathione reductase
Probab=97.37 E-value=0.0013 Score=58.35 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=28.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSR 30 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r 30 (182)
+|+|||+|+-|...|..+++.+++|.++.+
T Consensus 81 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 81 DLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 489999999999999999999999999995
No 125
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.36 E-value=0.00071 Score=57.72 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=25.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||||+||+=.|..+++.+.+|.+++|.+.
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~ 34 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKR 34 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence 699999999999999999999999999999764
No 126
>PRK07588 hypothetical protein; Provisional
Probab=97.33 E-value=0.0015 Score=54.85 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=30.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||||++|+=.|..|++.+.+|+++++.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 699999999999999999999999999997654
No 127
>PRK05868 hypothetical protein; Validated
Probab=97.29 E-value=0.0021 Score=53.99 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=30.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||||++|.-.|..|++.+.+|+++++.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 599999999999999999999889999998754
No 128
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.29 E-value=0.0019 Score=55.84 Aligned_cols=31 Identities=10% Similarity=0.207 Sum_probs=29.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|+.|...|..+++.+++|.++.++
T Consensus 5 DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~ 35 (466)
T PRK06115 5 DVVIIGGGPGGYNAAIRAGQLGLKVACVEGR 35 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 5899999999999999999999999999964
No 129
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.28 E-value=0.0026 Score=54.71 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=28.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSR 30 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r 30 (182)
+|+|||+|+.|+..|..|++.+.+|.++.+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~G~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQLGLKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 589999999999999999999999999998
No 130
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.28 E-value=0.00093 Score=58.85 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=27.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
||+|||+|+||+-.|..|.+.+-++++.++++.
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 699999999999999999998889999998764
No 131
>PLN02507 glutathione reductase
Probab=97.26 E-value=0.002 Score=56.35 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=28.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSR 30 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r 30 (182)
+|+|||+|+.|.-.|..+++.+++|.++.+
T Consensus 27 DvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 27 DLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 489999999999999999999999999996
No 132
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.24 E-value=0.0035 Score=54.24 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=29.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|+.|...|..+++.+++|.++.+.
T Consensus 6 dvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 6 DLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 5899999999999999999999999999975
No 133
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.20 E-value=0.0026 Score=53.92 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=29.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCC-eEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~~ 33 (182)
+|+|||||.+|+=.|..|++.+. +|++++|++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 69999999999999999999874 8999998754
No 134
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.19 E-value=0.0027 Score=54.72 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=29.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|+.|+..|..+++.+++|.++.+..
T Consensus 6 DvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 6 DVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 58999999999999999999999999999754
No 135
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0017 Score=53.84 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=85.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC---------CCCCC-CeEE---cceeEEeeCCC-eEEEc--
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---------QPGFD-NMWL---HSMIESAHDNG-AVVFR-- 64 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~---------~~~~~-~i~~---~~~v~~~~~~~-~v~~~-- 64 (182)
+-+|||+|+.|+|.|..|+..+-.|++..|+-..+.++. +..++ ++.. ..+|+.+.++. .|...
T Consensus 200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t 279 (503)
T KOG4716|consen 200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNT 279 (503)
T ss_pred ceEEEccceeeeehhhhHhhcCCCcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecc
Confidence 468999999999999999999999999999866544331 00011 1221 23455554422 12222
Q ss_pred -CCc--EEecCEEEEecccccCCCCCCCC-CceecC--CCccccccccccCCCCCCCEEEEeccCC--cccccHHHHHHH
Q 037525 65 -NGH--TVHADVILHCTGYKYHFPFLETN-GIVTMD--DNRVGPLYKHVFPPVLAPWLSFVGLPWK--VIPFPLCEYQSK 136 (182)
Q Consensus 65 -dg~--~~~~D~vi~atG~~~~~~~l~~~-~~~~~~--~~~~~~ly~~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~ 136 (182)
.++ +.+.|.|+||+|-.+.++-+.-+ .+++.+ .+.+ +... .-..+ .|.+|.+|+.-. +-.-|.+-+..|
T Consensus 280 ~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI-~v~~-~e~t~-vp~vyAvGDIl~~kpELTPvAIqsGr 356 (503)
T KOG4716|consen 280 NTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKI-PVDD-EEATN-VPYVYAVGDILEDKPELTPVAIQSGR 356 (503)
T ss_pred cccccccchhhhhhhhhccccchhhcCCCccceeecccCCcc-ccCh-HHhcC-CCceEEecceecCCcccchhhhhhch
Confidence 122 23689999999998876654322 234432 2233 2211 11223 799999999863 223567777778
Q ss_pred HHHHHHcC
Q 037525 137 WIAGVLSG 144 (182)
Q Consensus 137 ~ia~~l~g 144 (182)
.+|+-|-+
T Consensus 357 lLa~Rlf~ 364 (503)
T KOG4716|consen 357 LLARRLFA 364 (503)
T ss_pred HHHHHHhc
Confidence 88876643
No 136
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.14 E-value=0.00084 Score=57.90 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=30.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+..|..|++...+|+++.+.+.
T Consensus 142 ~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~ 174 (457)
T PRK11749 142 KVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK 174 (457)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 599999999999999999999899999988754
No 137
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.08 E-value=0.0068 Score=52.30 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=29.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|+.|...|..+++.+++|.++.|..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 68999999999999999999999999999863
No 138
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.08 E-value=0.0064 Score=53.18 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=28.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSR 30 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r 30 (182)
+|+|||+|+.|...|..+++..++|.++.+
T Consensus 7 DviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 7 DLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 589999999999999999999999999996
No 139
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.08 E-value=0.0014 Score=56.66 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=29.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|+.|++.|..+++...+|.++.++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 58999999999999999999999999999754
No 140
>PRK13748 putative mercuric reductase; Provisional
Probab=97.07 E-value=0.0068 Score=53.54 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=29.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|+.|...|..+++.+++|.++.++
T Consensus 100 DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 100 HVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 5899999999999999999999999999976
No 141
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.07 E-value=0.0067 Score=52.86 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=28.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSR 30 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r 30 (182)
+|+|||+|+.|...|..+++.+++|.++.+
T Consensus 4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~ 33 (484)
T TIGR01438 4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDF 33 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 589999999999999999999999999986
No 142
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.05 E-value=0.00099 Score=61.02 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=29.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|++|+..|..|++.+.+|+++.+.+
T Consensus 433 ~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~ 464 (752)
T PRK12778 433 KVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH 464 (752)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 58999999999999999999999999998754
No 143
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.05 E-value=0.01 Score=51.36 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=29.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+++|||+|+.|.-.|..+++.+.+|.++.+++
T Consensus 6 DvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 6 DVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 58999999999999999999988899999875
No 144
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.04 E-value=0.0061 Score=52.69 Aligned_cols=31 Identities=10% Similarity=0.198 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|+.|...|..+++..++|.++.++
T Consensus 6 DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 6 DVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 5899999999999999999999999999975
No 145
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.04 E-value=0.0031 Score=54.29 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=28.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|+.|...|..|++..++|.++.++
T Consensus 5 DvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 5 DVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5899999999999999999999999999873
No 146
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.02 E-value=0.0089 Score=51.62 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=30.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|+||+-.|..|.+.+.+|++..|.+.
T Consensus 8 ~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 8 DVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred ceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 589999999999999999999999999999764
No 147
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.02 E-value=0.0015 Score=61.43 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=30.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||||++|+..|..|++.+.+|+++.+++.
T Consensus 539 kVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 539 KVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK 571 (1012)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 599999999999999999999999999997653
No 148
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.02 E-value=0.0064 Score=53.03 Aligned_cols=30 Identities=13% Similarity=0.350 Sum_probs=28.1
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEec
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSR 30 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r 30 (182)
+|+|||+|+-|...|..+++. +++|.++.+
T Consensus 5 DviVIG~G~~G~~aA~~aa~~~g~~V~lie~ 35 (486)
T TIGR01423 5 DLVVIGAGSGGLEAGWNAATLYKKRVAVIDV 35 (486)
T ss_pred CEEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence 589999999999999999996 899999997
No 149
>PRK14727 putative mercuric reductase; Provisional
Probab=97.01 E-value=0.01 Score=51.49 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=29.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|+.|...|..+++..++|.++.+.
T Consensus 18 dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~ 48 (479)
T PRK14727 18 HVAIIGSGSAAFAAAIKAAEHGARVTIIEGA 48 (479)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 5899999999999999999999999999986
No 150
>PRK07846 mycothione reductase; Reviewed
Probab=96.95 E-value=0.0094 Score=51.42 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=24.6
Q ss_pred CCeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525 58 NGAVVFRNGHTVHADVILHCTGYKYHFPFLE 88 (182)
Q Consensus 58 ~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~ 88 (182)
++.|++.+|+.+.+|.+|+|||.++..+.++
T Consensus 116 ~~~V~v~~g~~~~~d~lViATGs~p~~p~i~ 146 (451)
T PRK07846 116 PKTLRTGDGEEITADQVVIAAGSRPVIPPVI 146 (451)
T ss_pred CCEEEECCCCEEEeCEEEEcCCCCCCCCCCC
Confidence 3467777787889999999999988765544
No 151
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.88 E-value=0.0039 Score=58.31 Aligned_cols=20 Identities=10% Similarity=0.281 Sum_probs=17.2
Q ss_pred EEecCEEEEecccccCCCCC
Q 037525 68 TVHADVILHCTGYKYHFPFL 87 (182)
Q Consensus 68 ~~~~D~vi~atG~~~~~~~l 87 (182)
.+++|.||.|+|..+++.++
T Consensus 714 ~i~~~~vi~A~G~~~~~~~~ 733 (1028)
T PRK06567 714 DIKTKTVIMAIGIENNTQFD 733 (1028)
T ss_pred cccCCEEEEecccCCccccc
Confidence 47899999999999987764
No 152
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.85 E-value=0.0022 Score=60.49 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=30.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+..|.+|++.+.+|+++.+.+.
T Consensus 432 kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~ 464 (1006)
T PRK12775 432 KVAICGSGPAGLAAAADLVKYGVDVTVYEALHV 464 (1006)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 599999999999999999999999999998653
No 153
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.84 E-value=0.012 Score=55.60 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=29.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|++|+..|..+++...+|+++.+.+
T Consensus 165 dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~ 196 (985)
T TIGR01372 165 DVLVVGAGPAGLAAALAAARAGARVILVDEQP 196 (985)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 59999999999999999999999999998764
No 154
>PLN02697 lycopene epsilon cyclase
Probab=96.83 E-value=0.0083 Score=52.89 Aligned_cols=33 Identities=12% Similarity=0.358 Sum_probs=29.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|.-+|..|++.+.+|.++.+..+
T Consensus 110 DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p 142 (529)
T PLN02697 110 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 142 (529)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEecCccc
Confidence 589999999999999999999889999987543
No 155
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.82 E-value=0.0028 Score=59.24 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|++|+..|..|++.+.+|+++.+.
T Consensus 385 KVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 385 NILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 6999999999999999999999999999874
No 156
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.76 E-value=0.00067 Score=58.81 Aligned_cols=74 Identities=15% Similarity=0.265 Sum_probs=47.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCCCCCeEEcceeEEeeCCCeEEEcCC----cEEecCEEEE
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRNG----HTVHADVILH 76 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~~~~i~~~~~v~~~~~~~~v~~~dg----~~~~~D~vi~ 76 (182)
+|+|||+|.+|+++|..|++.+.+|+++.+++.... .. ....+.+ .+|.+.-| ....+|.||.
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~-~~-----------~~~~l~~-~gv~~~~~~~~~~~~~~D~Vv~ 84 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGDDERH-RA-----------LAAILEA-LGATVRLGPGPTLPEDTDLVVT 84 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhh-HH-----------HHHHHHH-cCCEEEECCCccccCCCCEEEE
Confidence 589999999999999999998889999986542110 00 0000111 01111111 1235899999
Q ss_pred ecccccCCCCC
Q 037525 77 CTGYKYHFPFL 87 (182)
Q Consensus 77 atG~~~~~~~l 87 (182)
++|..++.+++
T Consensus 85 s~Gi~~~~~~~ 95 (480)
T PRK01438 85 SPGWRPDAPLL 95 (480)
T ss_pred CCCcCCCCHHH
Confidence 99999887653
No 157
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.66 E-value=0.011 Score=51.28 Aligned_cols=30 Identities=10% Similarity=0.179 Sum_probs=28.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSR 30 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r 30 (182)
+|+|||+|++|.-.|..+++.+++|.++.+
T Consensus 6 DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 6 DVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 489999999999999999999999999997
No 158
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.65 E-value=0.0031 Score=40.00 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=26.9
Q ss_pred EEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 4 LVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 4 VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
|||+|.||+-.|..|++...+|+++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999889999998764
No 159
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.51 E-value=0.024 Score=48.84 Aligned_cols=84 Identities=18% Similarity=0.254 Sum_probs=52.6
Q ss_pred CEEEEcCCccHHHHHHHHhccC--CeEEEEeccCCCCCCC-CCCC----------------CC----CeEEcceeEEee-
Q 037525 1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSVADGTYE-KQPG----------------FD----NMWLHSMIESAH- 56 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~~~~~~~-~~~~----------------~~----~i~~~~~v~~~~- 56 (182)
.|+|||+|++|.=.+..+...+ .++.++.|........ .+++ |. .+.....|+.++
T Consensus 76 ~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~ 155 (478)
T KOG1336|consen 76 HFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKADL 155 (478)
T ss_pred eEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEeec
Confidence 4899999999654444444332 3577777654321100 1111 11 234456666665
Q ss_pred CCCeEEEcCCcEEecCEEEEecccccCC
Q 037525 57 DNGAVVFRNGHTVHADVILHCTGYKYHF 84 (182)
Q Consensus 57 ~~~~v~~~dg~~~~~D~vi~atG~~~~~ 84 (182)
..+.+.+.+|+.++.|.+++|||..+..
T Consensus 156 ~~K~l~~~~Ge~~kys~LilATGs~~~~ 183 (478)
T KOG1336|consen 156 ASKTLVLGNGETLKYSKLIIATGSSAKT 183 (478)
T ss_pred cccEEEeCCCceeecceEEEeecCcccc
Confidence 2358999999999999999999995543
No 160
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.51 E-value=0.024 Score=48.90 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=23.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|+-|...|... .+++|.++.++
T Consensus 4 D~vvIG~G~~g~~aa~~~--~g~~V~lie~~ 32 (452)
T TIGR03452 4 DLIIIGTGSGNSIPDPRF--ADKRIAIVEKG 32 (452)
T ss_pred CEEEECCCHHHHHHHHHH--CCCeEEEEeCC
Confidence 589999999998876543 58899999975
No 161
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.43 E-value=0.0077 Score=52.79 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=28.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||..|+|.|...++.+.++.|++-..
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 58999999999999999999998888887643
No 162
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.38 E-value=0.0039 Score=53.49 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=30.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||||.+|++.|..|++.+.+|+++.+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 699999999999999999999999999987654
No 163
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=96.37 E-value=0.0051 Score=48.15 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=30.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|+||+-.|.+|++..-+|.++.|+-.
T Consensus 32 DViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls 64 (262)
T COG1635 32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLS 64 (262)
T ss_pred cEEEECcCcchHHHHHHHHhCCceEEEEEeecc
Confidence 589999999999999999999999999998743
No 164
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.36 E-value=0.002 Score=51.62 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=53.5
Q ss_pred CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCC----------CC-----------CCCCCCeEEcceeEEee-
Q 037525 1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTY----------EK-----------QPGFDNMWLHSMIESAH- 56 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~----------~~-----------~~~~~~i~~~~~v~~~~- 56 (182)
+.+|||||..|+-.|..|+.+ ..+|.+++-++-.... ++ -|.++++ ...|..++
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~--~~~v~~~~s 78 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRF--LNDVVTWDS 78 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHH--HHhhhhhcc
Confidence 468999999999999999974 3367777765432110 00 0111111 11133332
Q ss_pred CCCeEEEcCCcEEecCEEEEecccccCC
Q 037525 57 DNGAVVFRNGHTVHADVILHCTGYKYHF 84 (182)
Q Consensus 57 ~~~~v~~~dg~~~~~D~vi~atG~~~~~ 84 (182)
.++.|++++|..+.++-+.+||||+|.+
T Consensus 79 ~ehci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 79 SEHCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred ccceEEecCCceeeEEEEEEecCCCcce
Confidence 2247999999999999999999999974
No 165
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.35 E-value=0.0042 Score=53.23 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=29.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||..|++.|..|++.+.+|+++.+++
T Consensus 4 dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 4 PVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 59999999999999999999999999998654
No 166
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.33 E-value=0.0043 Score=50.55 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=29.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD 34 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~ 34 (182)
+|+|||||++|.=+|..|++.+.+|+++.|++..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 5899999999999999999999999999997653
No 167
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.31 E-value=0.0043 Score=46.84 Aligned_cols=32 Identities=16% Similarity=0.383 Sum_probs=28.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||++|+..|.+|++...+|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999999999888999996644
No 168
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.19 E-value=0.0065 Score=48.39 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=30.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+-.|..|++.+.+|.++.++..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 589999999999999999999889999998753
No 169
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.033 Score=48.35 Aligned_cols=31 Identities=10% Similarity=0.295 Sum_probs=27.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||||..|+|.|..-++.+.+.+|++.+
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 5899999999999999999988887777654
No 170
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.15 E-value=0.061 Score=48.73 Aligned_cols=31 Identities=6% Similarity=0.077 Sum_probs=29.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|+-|...|..+++.+++|.++.+.
T Consensus 118 DviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 118 DVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 5899999999999999999999999999864
No 171
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.04 E-value=0.0081 Score=52.00 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=30.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
.+||||||.+|++.|++|++.+-+|+|+.+.+.
T Consensus 126 svLVIGGGvAGitAAl~La~~G~~v~LVEKeps 158 (622)
T COG1148 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPS 158 (622)
T ss_pred ceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 489999999999999999999999999998764
No 172
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.00 E-value=0.0074 Score=47.10 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=27.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|+||+-.|..|++...+|.++.++..
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~ 51 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLS 51 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS
T ss_pred CEEEECCChhHHHHHHHHHHCCCeEEEEecCCC
Confidence 589999999999999999999999999998753
No 173
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=95.93 E-value=0.01 Score=49.42 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=29.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||..|+=+|.+|++.+.+|+++.|+.
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 58999999999999999999999999999864
No 174
>PRK07233 hypothetical protein; Provisional
Probab=95.92 E-value=0.01 Score=50.20 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=30.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|.+|+-.|..|++.+.+|+++.+++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~ 33 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQ 33 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCC
Confidence 699999999999999999999999999988753
No 175
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.91 E-value=0.011 Score=49.97 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=30.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||||++|.=+|..|++.+-+|+++++++.
T Consensus 20 dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 20 DVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred CEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 589999999999999999999999999998753
No 176
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=95.88 E-value=0.012 Score=47.05 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=30.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+-.|..|++...+|.++.+...
T Consensus 27 DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~ 59 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS 59 (257)
T ss_pred CEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 589999999999999999998889999998653
No 177
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=95.83 E-value=0.012 Score=49.48 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=29.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||++|+=+|..|++.+.+|.++++.+
T Consensus 8 dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 8 DAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 58999999999999999999998999999864
No 178
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=95.81 E-value=0.013 Score=46.88 Aligned_cols=33 Identities=30% Similarity=0.386 Sum_probs=30.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+=.|..|++...+|.++.|+..
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~ 55 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA 55 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 589999999999999999999899999998754
No 179
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=95.80 E-value=0.011 Score=50.14 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=30.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|.-.|..|++.+.+|.+++++..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 699999999999999999999999999998643
No 180
>PRK09126 hypothetical protein; Provisional
Probab=95.76 E-value=0.012 Score=49.38 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||++|+-.|..|++.+-+|++++|.+
T Consensus 5 dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 5 DIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 58999999999999999999999999999865
No 181
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.75 E-value=0.011 Score=48.24 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=30.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|..|+-+|.+|++.+.+|+++.+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence 48999999999999999999999999999873
No 182
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=95.74 E-value=0.013 Score=48.68 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=30.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|++|.=+|..|++.+.+|++++|+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 59999999999999999999999999999875
No 183
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.72 E-value=0.012 Score=49.83 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=29.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|.-+|.+|++.+.+|+++.|+.
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 58999999999999999999889999999875
No 184
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.71 E-value=0.014 Score=48.62 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=29.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||..|+-+|.+|++.+.+|+++.+..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999988999998853
No 185
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=95.69 E-value=0.014 Score=48.69 Aligned_cols=32 Identities=16% Similarity=0.351 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~ 32 (182)
+|+|||+|++|.-.|..|++.+ -+|++++|.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 5899999999999999999999 8999999864
No 186
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=95.68 E-value=0.011 Score=52.93 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=29.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||||++|++.|..+++.+.+|.+++++
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence 5999999999999999999999999999886
No 187
>PRK08244 hypothetical protein; Provisional
Probab=95.67 E-value=0.013 Score=50.90 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=30.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+-+|..|++.+-+|+++++.+.
T Consensus 4 dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 4 EVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 599999999999999999999999999998753
No 188
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=95.66 E-value=0.015 Score=48.64 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=30.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||||++|.=.|..|++.+.+|++++++..
T Consensus 7 dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 7 DVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 589999999999999999999889999998754
No 189
>PRK06184 hypothetical protein; Provisional
Probab=95.65 E-value=0.014 Score=50.85 Aligned_cols=33 Identities=15% Similarity=0.379 Sum_probs=30.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+=.|..|++.+-+|+++++.+.
T Consensus 5 dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 5 DVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 599999999999999999999999999998653
No 190
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=95.63 E-value=0.014 Score=49.24 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=29.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|++|.=.|..|++.+.+|.+++++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5999999999999999999999999999987
No 191
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.63 E-value=0.016 Score=48.58 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|++|.-.|..|++.+.+|+++++.+
T Consensus 9 dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 9 DIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 59999999999999999999988999999864
No 192
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.1 Score=43.73 Aligned_cols=83 Identities=23% Similarity=0.292 Sum_probs=48.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEe-ccCC--CCCCC-----CCC----------------CCC----CeEEccee
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVS-RSVA--DGTYE-----KQP----------------GFD----NMWLHSMI 52 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~-r~~~--~~~~~-----~~~----------------~~~----~i~~~~~v 52 (182)
.|+|||||+.|.-.|..-++.+-+.=++. |-.. ..... ..| .|+ +.....++
T Consensus 213 DVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~~l 292 (520)
T COG3634 213 DVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRASKL 292 (520)
T ss_pred eEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhhcc
Confidence 48999999999999999998765433332 2111 00000 011 010 11111122
Q ss_pred EEee-CC--CeEEEcCCcEEecCEEEEecccccC
Q 037525 53 ESAH-DN--GAVVFRNGHTVHADVILHCTGYKYH 83 (182)
Q Consensus 53 ~~~~-~~--~~v~~~dg~~~~~D~vi~atG~~~~ 83 (182)
..-. ++ ..|++.+|..++...||++||.+..
T Consensus 293 ~~a~~~~~l~ev~l~nGavLkaktvIlstGArWR 326 (520)
T COG3634 293 EPAAVEGGLIEVELANGAVLKARTVILATGARWR 326 (520)
T ss_pred eecCCCCccEEEEecCCceeccceEEEecCcchh
Confidence 2111 11 2588999999999999999998764
No 193
>PRK07045 putative monooxygenase; Reviewed
Probab=95.61 E-value=0.014 Score=48.94 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=30.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||||++|+=.|..|++.+-+|+++++.+.
T Consensus 7 ~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 7 DVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 589999999999999999999889999998764
No 194
>PRK08013 oxidoreductase; Provisional
Probab=95.57 E-value=0.017 Score=48.84 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=30.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|.=.|..|++.+-+|+++++.+.
T Consensus 5 dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 5 DVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 589999999999999999999999999998653
No 195
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.55 E-value=0.0089 Score=56.43 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=31.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD 34 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~ 34 (182)
||+|||+|++|+-.|..|.+.+..|++..|++..
T Consensus 1787 ~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1787 RVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred EEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence 6999999999999999999999999999998754
No 196
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.55 E-value=0.016 Score=50.86 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=29.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||.+|+-+|.+|+..+.+|.|+.+.+
T Consensus 8 DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 8 DLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 59999999999999999999999999999864
No 197
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=95.53 E-value=0.021 Score=47.06 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=30.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+.+|||+|.||+=+|..+++.+++|.++.+++.
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~H 35 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNH 35 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcCCEEEEEecccc
Confidence 479999999999999999999999999998764
No 198
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.49 E-value=0.017 Score=48.67 Aligned_cols=32 Identities=6% Similarity=0.253 Sum_probs=29.4
Q ss_pred CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~ 32 (182)
+|+|||||.+|+=+|.+|++. ..+|+++.+..
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 589999999999999999998 88999999864
No 199
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.48 E-value=0.018 Score=47.98 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=30.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD 34 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~ 34 (182)
+|+|||+|++|++.|..|++...+|+++.+.+..
T Consensus 20 ~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 20 KVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 5899999999999999999999999999987543
No 200
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.48 E-value=0.017 Score=48.48 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=30.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+=.|..|++.+-+|++++|++.
T Consensus 6 ~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 6 PVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 599999999999999999999889999998754
No 201
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.44 E-value=0.019 Score=49.21 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=29.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|++|.=.|..|++.+.+|.++.|+.
T Consensus 7 DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 7 DAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 58999999999999999999999999999864
No 202
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.42 E-value=0.019 Score=50.14 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=29.1
Q ss_pred CEEEEcCCccHHHHHHHHh-ccCCeEEEEeccCCC
Q 037525 1 VIILVGSSASAVDICRDLA-GVAKEVHLVSRSVAD 34 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~-~~a~~V~l~~r~~~~ 34 (182)
+|+|||+|++|+..|..|+ +...+|+++.+.+..
T Consensus 41 rVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 41 KVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred EEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 5999999999999999876 457789999997654
No 203
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=95.41 E-value=0.019 Score=49.69 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=30.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||||++|.=.|..|++.+.+|.+++++..
T Consensus 41 DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 41 RVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 599999999999999999999999999998743
No 204
>PRK10015 oxidoreductase; Provisional
Probab=95.41 E-value=0.021 Score=48.95 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|++|.=.|..|++.+.+|.++.|.+
T Consensus 7 DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~ 38 (429)
T PRK10015 7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38 (429)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 58999999999999999999999999999865
No 205
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=95.39 E-value=0.021 Score=47.80 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=29.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|++|.-+|..|++.+.+|.++.+++
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 58999999999999999999888999999764
No 206
>PRK06185 hypothetical protein; Provisional
Probab=95.39 E-value=0.019 Score=48.40 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=29.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||++|+=.|..|++.+.+|+++++++
T Consensus 8 dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 8 DCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 59999999999999999999988999999864
No 207
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.38 E-value=0.019 Score=48.44 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=29.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||++|.=+|..|++.+-+|+++++.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 59999999999999999999888999999765
No 208
>PRK06126 hypothetical protein; Provisional
Probab=95.37 E-value=0.019 Score=50.54 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=30.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||++|+=.|..|++.+-+|+++.|.+
T Consensus 9 ~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 9 PVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 59999999999999999999999999999875
No 209
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.1 Score=41.16 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=24.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEe
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVS 29 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~ 29 (182)
+|+|||+|+.|--.|..+++.--+-.|..
T Consensus 10 ~v~IiGSGPAa~tAAiYaaraelkPllfE 38 (322)
T KOG0404|consen 10 NVVIIGSGPAAHTAAIYAARAELKPLLFE 38 (322)
T ss_pred eEEEEccCchHHHHHHHHhhcccCceEEe
Confidence 58999999999999999998765555554
No 210
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=95.34 E-value=0.016 Score=49.60 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=26.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||||++|+=.|...++.+.+|.|+++.+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~ 33 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGF 33 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCcc
Confidence 489999999999999999999999999998764
No 211
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.31 E-value=0.022 Score=47.83 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=29.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||++|.=.|..|++.+.+|+++++.+
T Consensus 7 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 7 DIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 58999999999999999999999999998764
No 212
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.31 E-value=0.02 Score=48.32 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=29.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||..|+=+|.+|++.+.+|.++.+..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 58999999999999999999999999999863
No 213
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.27 E-value=0.024 Score=47.88 Aligned_cols=33 Identities=12% Similarity=0.283 Sum_probs=30.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||||++|+=.|..|++.+-+|+++++.+.
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 699999999999999999998889999998754
No 214
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=95.26 E-value=0.026 Score=47.77 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=29.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+-+|..|++.+.+|.++.++.
T Consensus 3 DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~ 34 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKRN 34 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 58999999999999999999888999998864
No 215
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.25 E-value=0.023 Score=49.69 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=29.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||.+|+=+|.+|+..+.+|.|+.+.+
T Consensus 8 DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d 39 (502)
T PRK13369 8 DLFVIGGGINGAGIARDAAGRGLKVLLCEKDD 39 (502)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 59999999999999999999988999999874
No 216
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.24 E-value=0.022 Score=47.67 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=29.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||||++|.-.|..|++.+-+|+++++.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 5899999999999999999999999999975
No 217
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=95.23 E-value=0.027 Score=47.72 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=30.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|.-.|..|++.+-+|.++.++..
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~ 37 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE 37 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCC
Confidence 599999999999999999999889999998754
No 218
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.22 E-value=0.27 Score=47.09 Aligned_cols=88 Identities=9% Similarity=0.071 Sum_probs=51.5
Q ss_pred EEecCEEEEecccccCCCCCCCCCceecCCC-ccccccccccCCCCCCCEEEEeccCCcc---c--ccHHHHHHHHHHHH
Q 037525 68 TVHADVILHCTGYKYHFPFLETNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKVI---P--FPLCEYQSKWIAGV 141 (182)
Q Consensus 68 ~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~~---~--~~~~e~qa~~ia~~ 141 (182)
.+++|.||+|.||.-.-+-+.....++.+.. .+.-.+. -+..+ .+.+|..|++..+. . ++-.-..|+.+-..
T Consensus 2041 ~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~-~y~t~-v~~vfaagdcrrgqslvvwai~egrq~a~~vd~~ 2118 (2142)
T KOG0399|consen 2041 IIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKD-SYSTD-VAKVFAAGDCRRGQSLVVWAIQEGRQAARQVDEL 2118 (2142)
T ss_pred eeecceeeeeccccCcchhhhhhcCcccCccccccCCCc-ccccc-ccceeecccccCCceEEEEEehhhhHHHHHHHHH
Confidence 4699999999999654333322222222111 1111222 24555 68999999998542 2 34444666777767
Q ss_pred HcCCCCCCCHHHHHHH
Q 037525 142 LSGQIVLPSQEEMMED 157 (182)
Q Consensus 142 l~g~~~lP~~~~m~~~ 157 (182)
+.|+..||...-+.+.
T Consensus 2119 ~~~~t~l~~~ggiv~~ 2134 (2142)
T KOG0399|consen 2119 MGGTTDLPGDGGIVQR 2134 (2142)
T ss_pred hCCcccCCCCCchhhH
Confidence 7788888876544433
No 219
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=95.21 E-value=0.024 Score=50.20 Aligned_cols=32 Identities=31% Similarity=0.379 Sum_probs=29.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||.+|+-+|.+|++.+.+|.|+.+.+
T Consensus 8 DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 8 DVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 58999999999999999999999999999864
No 220
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=95.19 E-value=0.027 Score=46.77 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=29.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+-+|.+|++.+.+|+++.+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 58999999999999999999988999998754
No 221
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.18 E-value=0.024 Score=49.23 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=30.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+..|..|++.+.+|+++.+.+.
T Consensus 145 ~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~ 177 (471)
T PRK12810 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADR 177 (471)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 589999999999999999999999999998754
No 222
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.18 E-value=0.023 Score=47.93 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||||++|+=+|..|++.+-+|+++++.
T Consensus 4 dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 4 DVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 5999999999999999999999999999997
No 223
>PRK11445 putative oxidoreductase; Provisional
Probab=95.18 E-value=0.023 Score=47.21 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=28.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|++|.-.|..|++. .+|++++|++
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 589999999999999999998 8999999875
No 224
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.14 E-value=0.019 Score=39.29 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=29.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||+.|..=+..|.+.+.+|+++.+..
T Consensus 9 ~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 9 RVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 58999999999999999999988999998753
No 225
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.12 E-value=0.025 Score=47.48 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=29.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||++|.=.|..|++.+-+|+++++.+
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 59999999999999999999988999999764
No 226
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=95.11 E-value=0.025 Score=47.67 Aligned_cols=33 Identities=9% Similarity=0.169 Sum_probs=30.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|.=.|..|++.+.+|+++++++.
T Consensus 4 dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 4 QVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 589999999999999999999999999998763
No 227
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=95.10 E-value=0.026 Score=48.07 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=29.1
Q ss_pred CEEEEcCCccHHHHHHHHhccC--CeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~~ 33 (182)
+|+|||||.||+-.|..|++.+ .+|++.+.++.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~ 36 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDR 36 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCC
Confidence 6999999999999999999965 68999987654
No 228
>PRK12831 putative oxidoreductase; Provisional
Probab=95.10 E-value=0.024 Score=49.11 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=29.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|++|+..|..|++...+|+++.+.+
T Consensus 142 ~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 142 KVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 58999999999999999999999999998754
No 229
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.10 E-value=0.025 Score=47.83 Aligned_cols=31 Identities=6% Similarity=0.236 Sum_probs=29.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||||++|.=.|..|++.+-+|+++++.
T Consensus 6 dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 6 DVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5999999999999999999998899999985
No 230
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.08 E-value=0.061 Score=45.39 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=50.0
Q ss_pred CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCC---CCCCCCCCCeEE----------cceeEEeeCCCeEEE-c
Q 037525 1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGT---YEKQPGFDNMWL----------HSMIESAHDNGAVVF-R 64 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~---~~~~~~~~~i~~----------~~~v~~~~~~~~v~~-~ 64 (182)
+|.|||+|++|+=.|..|.+. ..+|++..+.+.... ++-.|.++.+.. +++. ++.. .|.+ .
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rf-sf~g--Nv~vG~ 98 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERF-SFFG--NVKVGR 98 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccce-EEEe--cceecc
Confidence 589999999999999999884 347999988765321 344566554331 1111 1111 2333 2
Q ss_pred CCc----EEecCEEEEecccccC
Q 037525 65 NGH----TVHADVILHCTGYKYH 83 (182)
Q Consensus 65 dg~----~~~~D~vi~atG~~~~ 83 (182)
|.+ +-..|+||+|+|..-+
T Consensus 99 dvsl~eL~~~ydavvLaYGa~~d 121 (468)
T KOG1800|consen 99 DVSLKELTDNYDAVVLAYGADGD 121 (468)
T ss_pred cccHHHHhhcccEEEEEecCCCC
Confidence 332 1258999999998655
No 231
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.08 E-value=0.026 Score=48.73 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=30.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|+.|+..|..|++...+|+++.+.+.
T Consensus 135 ~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~ 167 (449)
T TIGR01316 135 KVAVIGAGPAGLACASELAKAGHSVTVFEALHK 167 (449)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 589999999999999999999999999998653
No 232
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.05 E-value=0.03 Score=47.02 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=28.8
Q ss_pred CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~ 32 (182)
+|+|||||++|+=.|..|++.+ -+|+++++.+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 5899999999999999999974 6899999865
No 233
>PRK06834 hypothetical protein; Provisional
Probab=95.02 E-value=0.027 Score=49.16 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=29.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|++|+=.|..|++.+-+|+++.+.+
T Consensus 5 dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~ 36 (488)
T PRK06834 5 AVVIAGGGPTGLMLAGELALAGVDVAIVERRP 36 (488)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 58999999999999999999999999999865
No 234
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.00 E-value=0.029 Score=46.97 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=28.8
Q ss_pred CEEEEcCCccHHHHHHHHhcc---CCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGV---AKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~---a~~V~l~~r~ 31 (182)
+|+|||+|++|.-+|..|++. +-+|++++|.
T Consensus 5 dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 5 DVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 589999999999999999997 8899999984
No 235
>PRK07190 hypothetical protein; Provisional
Probab=95.00 E-value=0.026 Score=49.24 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=29.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|++|+=+|..|++.+.+|.++.+.+
T Consensus 7 dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 7 DVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 58999999999999999999888999999865
No 236
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=94.99 E-value=0.028 Score=47.48 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=30.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|.=.|..|++.+-+|.++++.+.
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 589999999999999999999999999998763
No 237
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=94.98 E-value=0.029 Score=49.48 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=29.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|++|+=+|..|++.+.+|.++.+++
T Consensus 25 dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 25 PVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 59999999999999999999999999999875
No 238
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=94.94 E-value=0.033 Score=47.81 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=30.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|.+|+-.|..|.+.+.+|+++++++.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~ 33 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDV 33 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 699999999999999999999999999988754
No 239
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=94.93 E-value=0.033 Score=47.76 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=28.3
Q ss_pred CEEEEcCCccHHHHHHHHhc----cCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAG----VAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~----~a~~V~l~~r~ 31 (182)
+|+|||||++|+=+|..|++ .+.+|.+++++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 59999999999999999998 67899999984
No 240
>PRK07538 hypothetical protein; Provisional
Probab=94.89 E-value=0.034 Score=47.21 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=30.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||||++|+=.|..|++.+-+|+++.|.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 699999999999999999998889999998753
No 241
>PLN02268 probable polyamine oxidase
Probab=94.88 E-value=0.038 Score=47.13 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=28.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.||+-.|..|.+.+.+|++++.++
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~ 33 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRD 33 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 69999999999999999999888899887654
No 242
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=94.87 E-value=0.035 Score=48.87 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=30.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+=+|..|++.+.+|.+++|.+.
T Consensus 12 dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 12 DVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 599999999999999999999889999998753
No 243
>PRK07208 hypothetical protein; Provisional
Probab=94.86 E-value=0.035 Score=47.96 Aligned_cols=33 Identities=9% Similarity=0.266 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|.||+-.|..|++...+|+++.+++.
T Consensus 6 ~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~ 38 (479)
T PRK07208 6 SVVIIGAGPAGLTAAYELLKRGYPVTVLEADPV 38 (479)
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 589999999999999999998889999987653
No 244
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=94.86 E-value=0.035 Score=50.04 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||..|+-+|.+|+..+.+|.|+.+++
T Consensus 73 DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d 104 (627)
T PLN02464 73 DVLVVGGGATGAGVALDAATRGLRVGLVERED 104 (627)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 59999999999999999999999999999864
No 245
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=94.84 E-value=0.034 Score=50.17 Aligned_cols=33 Identities=15% Similarity=0.378 Sum_probs=29.6
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+-+|..|++. +-+|.++.+++.
T Consensus 34 dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 34 DVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 599999999999999999995 788999998753
No 246
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.76 E-value=0.035 Score=50.17 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=30.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+-.|..|++.+.+|+++.+.+.
T Consensus 329 ~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 329 RVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 599999999999999999999999999988654
No 247
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=94.68 E-value=0.039 Score=46.68 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=28.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|.+|+=.|..+++.+.+|.++.+.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence 599999999999999999999999999998654
No 248
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=94.67 E-value=0.041 Score=47.18 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=29.7
Q ss_pred CEEEEcCCccHHHHHHHHhcc----CCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGV----AKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~----a~~V~l~~r~~~ 33 (182)
+|+|||+|.||+-.|..|++. +.+|++.++++.
T Consensus 4 ~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r 40 (462)
T TIGR00562 4 HVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDR 40 (462)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCc
Confidence 589999999999999999997 788999988764
No 249
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.59 E-value=0.045 Score=47.52 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=29.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+..|..|++...+|+++.+.+.
T Consensus 143 ~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 143 RVAVIGAGPAGLACADILARAGVQVVVFDRHPE 175 (467)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 589999999999999999998889999987654
No 250
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.55 E-value=0.046 Score=47.92 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|.||+-.|..|.+.+-+|++..-++.
T Consensus 17 ~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdR 49 (501)
T KOG0029|consen 17 KVIVIGAGLAGLSAARQLQDFGFDVLVLEARDR 49 (501)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCceEEEeccCC
Confidence 599999999999999999999999999986653
No 251
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=94.54 E-value=0.046 Score=46.18 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=28.3
Q ss_pred CEEEEcCCccHHHHHHHHhcc-C-CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGV-A-KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a-~~V~l~~r~~ 32 (182)
+|+|||||.+|.-+|.+|++. . ++|++++|+.
T Consensus 32 dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 32 DVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 589999999999999999985 6 5899999864
No 252
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=94.52 E-value=0.047 Score=45.49 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=29.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||.+|+-+|.+|++.+.+|+++.+..
T Consensus 6 ~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 6 DVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 58999999999999999999888999998764
No 253
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.50 E-value=0.033 Score=41.03 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=29.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|+|+|+-|.-+|..|++...+|+|..|.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999865
No 254
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=94.47 E-value=0.046 Score=44.00 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=28.4
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCC
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVAD 34 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~ 34 (182)
+++|||+|..|.=+|..|++.. .+|.++++++.+
T Consensus 2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 4899999999999999999976 589999998754
No 255
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.46 E-value=0.045 Score=49.54 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=29.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||.+|+-+|..|++.+.+|+++.+..
T Consensus 262 dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 262 DAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 58999999999999999999999999999863
No 256
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=94.45 E-value=0.042 Score=47.84 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=29.8
Q ss_pred EEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 2 IILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 2 V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
|+|||+|.+|+-.|..|++.+.+|+++++++.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~ 32 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDK 32 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 68999999999999999999999999998764
No 257
>PLN02985 squalene monooxygenase
Probab=94.45 E-value=0.048 Score=47.97 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|.=.|..|++.+.+|++++|..
T Consensus 45 DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 45 DVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 58999999999999999999999999999864
No 258
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=94.44 E-value=0.049 Score=47.04 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=28.7
Q ss_pred CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=+|.+|++. +.+|++++++.
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 599999999999999999997 67999998753
No 259
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.40 E-value=0.047 Score=49.40 Aligned_cols=33 Identities=9% Similarity=0.224 Sum_probs=30.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+..|..|++.+.+|+++.+.+.
T Consensus 195 ~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 195 KVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 599999999999999999999999999988654
No 260
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.39 E-value=0.058 Score=47.11 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=30.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|..|+=.|..|++.+.+|++++|...
T Consensus 5 dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~ 37 (487)
T COG1233 5 DVVVIGAGLNGLAAAALLARAGLKVTVLEKNDR 37 (487)
T ss_pred cEEEECCChhHHHHHHHHHhCCCEEEEEEecCC
Confidence 589999999999999999999999999997653
No 261
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.38 E-value=0.053 Score=41.95 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=28.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||||.+|.--+..|.+.+.+|+++...
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5899999999999999999998899998764
No 262
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=94.36 E-value=0.057 Score=46.20 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++.+ .+|.++.+.+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~ 33 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMP 33 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCC
Confidence 5999999999999999999988 8999998764
No 263
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=94.33 E-value=0.049 Score=47.54 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=30.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+..|..|++...+|+++.+.+.
T Consensus 145 ~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 145 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 589999999999999999998889999987653
No 264
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=94.32 E-value=0.14 Score=42.64 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=24.6
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCCC
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVADG 35 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~~ 35 (182)
+++.||.|++++-+|..|.+.. .++..+.+++.+.
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~ 39 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFS 39 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCC
Confidence 4899999999999999999976 6788888877653
No 265
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=94.31 E-value=0.056 Score=46.63 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=29.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++.+.+|.++.+.+
T Consensus 6 DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 6 DVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 59999999999999999999988999998754
No 266
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.29 E-value=0.061 Score=47.35 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=30.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||.+|+-+|.+++..+-+|.|+.+++
T Consensus 14 DviVIGGGitG~GiArDaA~RGl~v~LvE~~D 45 (532)
T COG0578 14 DVIVIGGGITGAGIARDAAGRGLKVALVEKGD 45 (532)
T ss_pred CEEEECCchhhHHHHHHHHhCCCeEEEEecCc
Confidence 58999999999999999999999999999875
No 267
>PRK06996 hypothetical protein; Provisional
Probab=94.26 E-value=0.06 Score=45.49 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=28.2
Q ss_pred CEEEEcCCccHHHHHHHHhccC----CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA----KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a----~~V~l~~r~~ 32 (182)
+|+|||||+.|.-+|..|++.+ .+|+++++.+
T Consensus 13 dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 13 DIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 5899999999999999999875 4799999864
No 268
>PLN02576 protoporphyrinogen oxidase
Probab=94.25 E-value=0.058 Score=46.81 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~~ 33 (182)
+|+|||||.||+-.|..|++. +.+|++++.++.
T Consensus 14 ~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~r 47 (496)
T PLN02576 14 DVAVVGAGVSGLAAAYALASKHGVNVLVTEARDR 47 (496)
T ss_pred CEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 589999999999999999998 789999988754
No 269
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.16 E-value=0.051 Score=49.02 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=30.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+..|..|++.+.+|+++.+.+.
T Consensus 312 kVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 312 KVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 589999999999999999999889999998764
No 270
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=94.15 E-value=0.065 Score=46.58 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=30.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|..|+-.|..|++.+.+|.++++++.
T Consensus 3 dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~ 35 (492)
T TIGR02733 3 SVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQ 35 (492)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 589999999999999999999999999998754
No 271
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=94.02 E-value=0.065 Score=48.58 Aligned_cols=32 Identities=6% Similarity=0.161 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||.+|+=+|..|++.+-+|++++|.+
T Consensus 83 ~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 83 RVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 69999999999999999999999999999864
No 272
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=93.92 E-value=0.072 Score=46.50 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=28.4
Q ss_pred CEEEEcCCccHHHHHHHHhcc--CCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~ 31 (182)
+|+|||||..|+-+|.+|++. ..+|++++|.
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~ 34 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERL 34 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence 589999999999999999996 6789999984
No 273
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=93.91 E-value=0.45 Score=43.43 Aligned_cols=88 Identities=14% Similarity=0.159 Sum_probs=56.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCC---eEEEEeccCCCCC-----CCCCCC----------------CCCeEE--cceeEE
Q 037525 1 VIILVGSSASAVDICRDLAGVAK---EVHLVSRSVADGT-----YEKQPG----------------FDNMWL--HSMIES 54 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~---~V~l~~r~~~~~~-----~~~~~~----------------~~~i~~--~~~v~~ 54 (182)
+++|||.|..|.-...++.+.+. .|+++...+.... .+.+++ ..++++ ...+..
T Consensus 5 klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~~ 84 (793)
T COG1251 5 KLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVIQ 84 (793)
T ss_pred eEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeEE
Confidence 57999999999998888888544 5666654432211 011111 013433 456667
Q ss_pred eeCC-CeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525 55 AHDN-GAVVFRNGHTVHADVILHCTGYKYHFPFLE 88 (182)
Q Consensus 55 ~~~~-~~v~~~dg~~~~~D~vi~atG~~~~~~~l~ 88 (182)
++.+ +.|+.++|..+..|-+|+|||..|-.+.++
T Consensus 85 idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiP 119 (793)
T COG1251 85 IDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIP 119 (793)
T ss_pred eccCcceEEccCCcEeecceeEEecCccccccCCC
Confidence 7644 356666788899999999999866443333
No 274
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.91 E-value=0.054 Score=40.96 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=27.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||+|..|..+|..++..+.+|++..+.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999998864
No 275
>PTZ00188 adrenodoxin reductase; Provisional
Probab=93.85 E-value=0.082 Score=46.25 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=27.6
Q ss_pred CEEEEcCCccHHHHHHHHhc---------------------cCCeEEEEeccCCC
Q 037525 1 VIILVGSSASAVDICRDLAG---------------------VAKEVHLVSRSVAD 34 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~---------------------~a~~V~l~~r~~~~ 34 (182)
+++|||.||.|+|+|..|+. ..++|+++.|+.+.
T Consensus 199 ~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~ 253 (506)
T PTZ00188 199 TSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFW 253 (506)
T ss_pred cEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHH
Confidence 48999999999999997532 34579999998763
No 276
>PRK07121 hypothetical protein; Validated
Probab=93.81 E-value=0.079 Score=46.16 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=29.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++.+.+|.++.+..
T Consensus 22 DVvVVGaG~AGl~AA~~aae~G~~VillEK~~ 53 (492)
T PRK07121 22 DVVVVGFGAAGACAAIEAAAAGARVLVLERAA 53 (492)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 59999999999999999999888999998754
No 277
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.78 E-value=0.081 Score=39.17 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=26.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEe
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVS 29 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~ 29 (182)
+|+|||||..|...+..|.+.+.+|+++.
T Consensus 15 ~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 15 VVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 58999999999999999999888999984
No 278
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=93.73 E-value=0.087 Score=45.88 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=30.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|.+|+-.|..|++.+.+|.+++++..
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 34 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLI 34 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 589999999999999999999999999998754
No 279
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=93.63 E-value=0.083 Score=45.47 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=28.3
Q ss_pred CEEEEcCCccHHHHHHHHhcc------CCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGV------AKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~------a~~V~l~~r~~~ 33 (182)
+|+|||+|.||+-.|..|.+. ..+|++++.++.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r 41 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEY 41 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCC
Confidence 599999999999999999975 257999987654
No 280
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=0.086 Score=45.86 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=31.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
||+|+|+|..|+-.|.+|++.+-.|++.++++.
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~ 34 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDR 34 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCc
Confidence 799999999999999999999999999998764
No 281
>PRK09897 hypothetical protein; Provisional
Probab=93.58 E-value=0.085 Score=46.67 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=27.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCC--eEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~ 32 (182)
+|+|||+|++|+=+|..|++... +|+++.++.
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 59999999999999999987544 799998854
No 282
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.47 E-value=0.61 Score=38.77 Aligned_cols=83 Identities=23% Similarity=0.378 Sum_probs=54.5
Q ss_pred EEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCCC---------------C---CCC---CCCeE--EcceeEEee
Q 037525 2 IILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTYE---------------K---QPG---FDNMW--LHSMIESAH 56 (182)
Q Consensus 2 V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~~---------------~---~~~---~~~i~--~~~~v~~~~ 56 (182)
++|||+|..|...|..+.+. ..+++++.+........ . .+. ..++. ....+.++.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id 80 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID 80 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence 58999999999999988873 44677666654321100 0 000 01222 234566676
Q ss_pred C-CCeEEEcCCcEEecCEEEEecccccCCC
Q 037525 57 D-NGAVVFRNGHTVHADVILHCTGYKYHFP 85 (182)
Q Consensus 57 ~-~~~v~~~dg~~~~~D~vi~atG~~~~~~ 85 (182)
. .+.+.+.+| .+..|.+++|||..+..+
T Consensus 81 ~~~~~v~~~~g-~~~yd~LvlatGa~~~~~ 109 (415)
T COG0446 81 PENKVVLLDDG-EIEYDYLVLATGARPRPP 109 (415)
T ss_pred CCCCEEEECCC-cccccEEEEcCCCcccCC
Confidence 3 346777788 788999999999998754
No 283
>PTZ00367 squalene epoxidase; Provisional
Probab=93.40 E-value=0.095 Score=46.72 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||..|.=+|..|++.+.+|++++|..
T Consensus 35 dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 35 DVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 58999999999999999999999999999864
No 284
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=93.27 E-value=0.11 Score=45.07 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=30.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD 34 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~ 34 (182)
+|+|||+|.+|.-.|..|++.+.+|+++++++..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~ 34 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFI 34 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 6899999999999999999998899999987543
No 285
>PRK08401 L-aspartate oxidase; Provisional
Probab=93.26 E-value=0.11 Score=45.15 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=28.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|.+|+=.|..+++.+.+|.++.+.
T Consensus 3 DVvVVGaG~AGl~AAi~aae~G~~V~liek~ 33 (466)
T PRK08401 3 KVGIVGGGLAGLTAAISLAKKGFDVTIIGPG 33 (466)
T ss_pred eEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5999999999999999999988889998874
No 286
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.25 E-value=0.12 Score=37.31 Aligned_cols=31 Identities=35% Similarity=0.462 Sum_probs=29.2
Q ss_pred EEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 2 IILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 2 V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
|+|+|+|..|.=+|..|++...+|+++.|+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999888999999976
No 287
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.23 E-value=0.11 Score=46.23 Aligned_cols=33 Identities=9% Similarity=0.244 Sum_probs=29.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|+-.|..|++.+.+|+++.+.+.
T Consensus 139 ~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~ 171 (564)
T PRK12771 139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPK 171 (564)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 599999999999999999998888999987653
No 288
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=93.14 E-value=0.12 Score=45.38 Aligned_cols=32 Identities=9% Similarity=0.229 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++.+.+|.++.+.+
T Consensus 63 DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~ 94 (506)
T PRK06481 63 DIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP 94 (506)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 59999999999999999999888999998754
No 289
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.11 E-value=0.12 Score=39.85 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=27.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSR 30 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r 30 (182)
+|+|||||..|.-.+..|.+.+.+|+++.+
T Consensus 12 ~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 12 RVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 589999999999999999998889999875
No 290
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=93.09 E-value=0.12 Score=45.42 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=28.1
Q ss_pred CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~ 32 (182)
+|+|||||..|+-+|.+|++.. .+|.++++.+
T Consensus 47 DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 47 DVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred cEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 5899999999999999999863 5899998863
No 291
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=93.08 E-value=0.1 Score=46.77 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=28.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|.+|++.|..+++.+.+|.++.+.
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~ 32 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLN 32 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence 5899999999999999999998899999875
No 292
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=93.01 E-value=0.12 Score=45.93 Aligned_cols=32 Identities=13% Similarity=0.276 Sum_probs=28.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++.+.+|.++.+..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~ 32 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVY 32 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 59999999999999999999888899988643
No 293
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=92.94 E-value=0.11 Score=45.57 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=28.0
Q ss_pred CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~ 32 (182)
+|+|||||..|+-+|.+|++. ..+|.+++|..
T Consensus 7 DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~ 40 (494)
T PRK05257 7 DVVLIGGGIMSATLGTLLKELEPEWSITMFERLD 40 (494)
T ss_pred eEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 589999999999999999984 56899999753
No 294
>PLN02661 Putative thiazole synthesis
Probab=92.86 E-value=0.13 Score=43.25 Aligned_cols=32 Identities=19% Similarity=0.415 Sum_probs=28.3
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..|++. +.+|.++.+..
T Consensus 94 DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 589999999999999999974 67899999864
No 295
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=92.85 E-value=0.13 Score=45.83 Aligned_cols=32 Identities=13% Similarity=0.276 Sum_probs=29.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+-.|..+++.+.+|.++.+..
T Consensus 11 DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~ 42 (574)
T PRK12842 11 DVLVIGSGAGGLSAAITARKLGLDVVVLEKEP 42 (574)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 59999999999999999999888999998754
No 296
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=92.75 E-value=0.15 Score=43.90 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=30.0
Q ss_pred CEEEEcCCccHHHHHHHHhccC--CeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~~ 33 (182)
+|+|||||..|+-+|.+|+++. .+|.++.+...
T Consensus 5 DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~ 39 (429)
T COG0579 5 DVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDG 39 (429)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCc
Confidence 5899999999999999999988 78999998653
No 297
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=92.64 E-value=0.11 Score=44.91 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=26.0
Q ss_pred CEEEEcCCccHHHHHHHHhccC---CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA---KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a---~~V~l~~r~~ 32 (182)
+|+|||||.+|.=.|..|++.. -+|+|+++..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 5999999999999999999976 6799998864
No 298
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=92.63 E-value=0.15 Score=44.74 Aligned_cols=31 Identities=23% Similarity=0.189 Sum_probs=28.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+| +|+=.|.++++.+.+|.++.+.+
T Consensus 9 DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~ 39 (513)
T PRK12837 9 DVLVAGSG-GGVAGAYTAAREGLSVALVEATD 39 (513)
T ss_pred CEEEECch-HHHHHHHHHHHCCCcEEEEecCC
Confidence 59999999 99999999999888999998654
No 299
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=92.60 E-value=0.16 Score=45.04 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++.+.+|.++.+.+
T Consensus 6 DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 6 DVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 59999999999999999999888999998765
No 300
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=92.53 E-value=0.19 Score=42.72 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=29.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|.|||+|-.|.-+|..|++.+++|++++|.
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 4899999999999999999999999999995
No 301
>PLN02529 lysine-specific histone demethylase 1
Probab=92.51 E-value=0.16 Score=46.68 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=28.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+..|..|++.+.+|+++..++
T Consensus 162 ~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~ 193 (738)
T PLN02529 162 SVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN 193 (738)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcEEEEecCc
Confidence 58999999999999999999988999988653
No 302
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=92.38 E-value=0.16 Score=44.52 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=28.1
Q ss_pred CEEEEcCCccHHHHHHHHhcc--CCeEEEEec
Q 037525 1 VIILVGSSASAVDICRDLAGV--AKEVHLVSR 30 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r 30 (182)
+|+|||||..|+-+|..|++. ..+|.+++|
T Consensus 8 DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr 39 (497)
T PRK13339 8 DVVLVGAGILSTTFGVLLKELDPDWNIEVVER 39 (497)
T ss_pred CEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 589999999999999999998 678999999
No 303
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=92.34 E-value=0.16 Score=46.83 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~ 33 (182)
+|+|||||++|+=.|..|++. ..+|+++.+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999987 679999998764
No 304
>PLN02676 polyamine oxidase
Probab=92.31 E-value=0.17 Score=44.17 Aligned_cols=33 Identities=15% Similarity=0.378 Sum_probs=28.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCC-eEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~~ 33 (182)
+|+|||+|.+|+-.|..|++.+. +|.++.+++.
T Consensus 28 ~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~ 61 (487)
T PLN02676 28 SVIIVGAGMSGISAAKTLSEAGIEDILILEATDR 61 (487)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCC
Confidence 58999999999999999999875 5888887653
No 305
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.27 E-value=0.18 Score=43.69 Aligned_cols=33 Identities=9% Similarity=0.215 Sum_probs=27.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCC---eEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAK---EVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~---~V~l~~r~~~ 33 (182)
+|+|||+|.||+.+|.+|.+..+ .|.++.+++.
T Consensus 3 ~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 3 KVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred eEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 69999999999999999998533 3888887654
No 306
>PLN02568 polyamine oxidase
Probab=92.26 E-value=0.19 Score=44.54 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=28.5
Q ss_pred CEEEEcCCccHHHHHHHHhccC-----CeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVA-----KEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-----~~V~l~~r~~~ 33 (182)
+|+|||+|.+|+-.|..|++.. .+|+++.++..
T Consensus 7 ~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~ 44 (539)
T PLN02568 7 RIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDR 44 (539)
T ss_pred cEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCC
Confidence 5999999999999999999865 67999987653
No 307
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=92.26 E-value=0.17 Score=43.72 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=30.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|..+.=+|..|++.+++|.++.|++.
T Consensus 6 DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~ 38 (443)
T PTZ00363 6 DVIVCGTGLKECILSGLLSVNGKKVLHMDRNPY 38 (443)
T ss_pred eEEEECCChHHHHHHhhhhhCCCEEEEecCCCC
Confidence 489999999999999999999999999999764
No 308
>PLN02487 zeta-carotene desaturase
Probab=92.21 E-value=0.19 Score=44.87 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=30.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD 34 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~ 34 (182)
+|+|||+|.+|+-.|..|++.+.+|+++++++..
T Consensus 77 ~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~ 110 (569)
T PLN02487 77 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFI 110 (569)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCC
Confidence 5899999999999999999999999999987643
No 309
>PRK02106 choline dehydrogenase; Validated
Probab=92.14 E-value=0.18 Score=44.72 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=29.0
Q ss_pred CEEEEcCCccHHHHHHHHhc-cCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAG-VAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~-~a~~V~l~~r~~ 32 (182)
+++|||+|.+|.=+|..|++ ...+|.++++++
T Consensus 7 D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 7 DYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 48999999999999999999 677899998874
No 310
>PRK07804 L-aspartate oxidase; Provisional
Probab=92.07 E-value=0.2 Score=44.35 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=28.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++...+|.++.+..
T Consensus 18 DVlVIG~G~AGl~AAi~aae~G~~VilleK~~ 49 (541)
T PRK07804 18 DVVVVGSGVAGLTAALAARRAGRRVLVVTKAA 49 (541)
T ss_pred CEEEECccHHHHHHHHHHHHcCCeEEEEEccC
Confidence 59999999999999999999877899988754
No 311
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.01 E-value=0.21 Score=39.23 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=27.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||||..|.-=+..|.+.+.+|+++...
T Consensus 27 ~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 27 KVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5999999999999999999988899999764
No 312
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.99 E-value=0.18 Score=45.41 Aligned_cols=32 Identities=13% Similarity=0.300 Sum_probs=28.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++.+.+|.++.+..
T Consensus 10 DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~ 41 (626)
T PRK07803 10 DVVVIGAGGAGLRAAIEARERGLRVAVVCKSL 41 (626)
T ss_pred cEEEECcCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 59999999999999999999888899988753
No 313
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.91 E-value=0.23 Score=35.61 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=27.9
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~ 32 (182)
+|+|||+|-.|.-++..|+.. +++|+++.|..
T Consensus 14 ~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 14 RVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 589999999999999999985 45699998853
No 314
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=91.90 E-value=0.2 Score=44.52 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=29.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+-.|..+++.+.+|.++.+..
T Consensus 8 DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~ 39 (557)
T PRK12844 8 DVVVVGSGGGGMCAALAAADSGLEPLIVEKQD 39 (557)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 58999999999999999999988999998753
No 315
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=91.84 E-value=0.62 Score=40.11 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=29.5
Q ss_pred eeEEeeC-CCeEEEcCCcEEecCEEEEecccccC-CCCCCC
Q 037525 51 MIESAHD-NGAVVFRNGHTVHADVILHCTGYKYH-FPFLET 89 (182)
Q Consensus 51 ~v~~~~~-~~~v~~~dg~~~~~D~vi~atG~~~~-~~~l~~ 89 (182)
++..+++ ++.|++.||++|..|-.++|||-+|. .+.+++
T Consensus 279 kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~ 319 (659)
T KOG1346|consen 279 KVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEE 319 (659)
T ss_pred ceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhh
Confidence 3445553 45789999999999999999999985 344443
No 316
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=91.84 E-value=0.21 Score=44.86 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=28.2
Q ss_pred CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++. +.+|.++.+..
T Consensus 13 DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~ 46 (608)
T PRK06854 13 DILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKAN 46 (608)
T ss_pred CEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 599999999999999999987 67899988753
No 317
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=91.84 E-value=0.2 Score=44.75 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=29.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+-.|..+++.+.+|.++.+..
T Consensus 13 DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~ 44 (584)
T PRK12835 13 DVLVVGSGGGGMTAALTAAARGLDTLVVEKSA 44 (584)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 59999999999999999999988999998754
No 318
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.71 E-value=0.22 Score=44.59 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=28.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|.+|+=.|.++++.+.+|.++.+.
T Consensus 14 DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 14 DVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 5999999999999999999987789998875
No 319
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=91.70 E-value=0.21 Score=45.32 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=28.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|.++++.+.+|.++.+.+
T Consensus 7 DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~ 38 (657)
T PRK08626 7 DALVIGAGLAGLRVAIAAAQRGLDTIVLSLVP 38 (657)
T ss_pred cEEEECccHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 59999999999999999999888899987643
No 320
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.66 E-value=0.23 Score=44.28 Aligned_cols=31 Identities=13% Similarity=0.307 Sum_probs=28.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|.+|+=.|.++++.+.+|.++.+.
T Consensus 7 DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~ 37 (566)
T PRK06452 7 DAVVIGGGLAGLMSAHEIASAGFKVAVISKV 37 (566)
T ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEEcc
Confidence 5999999999999999999988889998865
No 321
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=91.65 E-value=0.23 Score=46.08 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=29.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+-.|..|.+.+.+|+++..+.
T Consensus 240 ~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~ 271 (808)
T PLN02328 240 NVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA 271 (808)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 59999999999999999999888899988754
No 322
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.64 E-value=0.21 Score=44.66 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=28.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|.+|+=.|.++++.+.+|.++.+.
T Consensus 5 DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~ 35 (589)
T PRK08641 5 KVIVVGGGLAGLMATIKAAEAGVHVDLFSLV 35 (589)
T ss_pred cEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence 5999999999999999999988889998854
No 323
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.58 E-value=0.23 Score=44.54 Aligned_cols=32 Identities=9% Similarity=0.262 Sum_probs=28.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+-.|..+++.+.+|.++.+..
T Consensus 14 DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~ 45 (598)
T PRK09078 14 DVVVVGAGGAGLRATLGMAEAGLKTACITKVF 45 (598)
T ss_pred CEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 59999999999999999999877899887653
No 324
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=91.52 E-value=0.23 Score=42.66 Aligned_cols=31 Identities=19% Similarity=0.362 Sum_probs=28.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|.+|+-.|..+++.+.+|.++.++
T Consensus 4 DviIIG~G~aGl~aA~~la~~g~~v~vi~~~ 34 (422)
T PRK05329 4 DVLVIGGGLAGLTAALAAAEAGKRVALVAKG 34 (422)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence 5899999999999999999999899999875
No 325
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=91.50 E-value=0.24 Score=43.05 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=25.3
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEec
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSR 30 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r 30 (182)
+|+|||+|++++|++....+. +++|+..++
T Consensus 264 ~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~ 294 (457)
T COG0493 264 RVVVIGGGDTAMDCAGTALRLGAKSVTCFYR 294 (457)
T ss_pred eEEEECCCCCHHHHHHHHhhcCCeEEEEecc
Confidence 589999999999999887775 568888864
No 326
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=91.45 E-value=0.22 Score=43.22 Aligned_cols=33 Identities=15% Similarity=0.374 Sum_probs=30.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|+.|+..|.+|++....|++..|.+.
T Consensus 125 ~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 125 KVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred EEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 599999999999999999999999999887654
No 327
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=91.36 E-value=0.25 Score=43.06 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=27.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++.+. |.++.+.+
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~ 34 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQGR-VIVLSKAP 34 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCCC-EEEEEccC
Confidence 59999999999999999999876 99888764
No 328
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.36 E-value=0.24 Score=44.16 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=27.9
Q ss_pred CEEEEcCCccHHHHHHHHhccC---CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA---KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a---~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++.+ .+|.++.+..
T Consensus 7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~ 41 (577)
T PRK06069 7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQ 41 (577)
T ss_pred CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEccc
Confidence 5999999999999999999875 5899988654
No 329
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=91.32 E-value=0.16 Score=43.13 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=27.7
Q ss_pred EEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 3 ILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 3 ~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|||+|++|+=.|..+++.+.+|.++++.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~ 30 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK 30 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCc
Confidence 599999999999999999988999999865
No 330
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=91.30 E-value=0.22 Score=36.54 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=25.6
Q ss_pred EEEcCCccHHHHHHHHhccC-----CeEEEEeccC
Q 037525 3 ILVGSSASAVDICRDLAGVA-----KEVHLVSRSV 32 (182)
Q Consensus 3 ~VVG~G~sg~d~A~~l~~~a-----~~V~l~~r~~ 32 (182)
+|||+|++|+=++..|.+.+ .+|+++.+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 59999999999999999974 3688888744
No 331
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.18 E-value=0.26 Score=44.60 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=27.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSR 30 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r 30 (182)
+|+|||+|.+|+=.|..+++.+.+|.++..
T Consensus 37 DVlVVG~G~AGl~AAi~Aae~G~~VilieK 66 (640)
T PRK07573 37 DVIVVGTGLAGASAAATLGELGYNVKVFCY 66 (640)
T ss_pred CEEEECccHHHHHHHHHHHHcCCcEEEEec
Confidence 599999999999999999998778999875
No 332
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=91.17 E-value=0.27 Score=44.33 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=28.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|.++++.+.+|.++.+..
T Consensus 31 DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~ 62 (617)
T PTZ00139 31 DAVVVGAGGAGLRAALGLVELGYKTACISKLF 62 (617)
T ss_pred CEEEECccHHHHHHHHHHHHcCCcEEEEeccC
Confidence 59999999999999999999877899988754
No 333
>PRK04148 hypothetical protein; Provisional
Probab=90.99 E-value=0.26 Score=35.58 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=28.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|++||.| +|.++|..|++.+.+|+.+..++.
T Consensus 19 kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 48999999 999999999999989999887653
No 334
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=90.93 E-value=0.22 Score=44.72 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=27.9
Q ss_pred EEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 2 IILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 2 V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
|+|||+|.+|+=.|..+++.+.+|.++.+..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 7999999999999999999888899988654
No 335
>PRK08275 putative oxidoreductase; Provisional
Probab=90.93 E-value=0.3 Score=43.31 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=27.4
Q ss_pred CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++. ..+|.++.+..
T Consensus 11 DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~ 44 (554)
T PRK08275 11 DILVIGGGTAGPMAAIKAKERNPALRVLLLEKAN 44 (554)
T ss_pred CEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 599999999999999999975 45899988754
No 336
>PLN02612 phytoene desaturase
Probab=90.90 E-value=0.33 Score=43.22 Aligned_cols=33 Identities=12% Similarity=0.257 Sum_probs=30.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|.+|+-.|..|++...+|+++.+++.
T Consensus 95 ~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~ 127 (567)
T PLN02612 95 KVVIAGAGLAGLSTAKYLADAGHKPILLEARDV 127 (567)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 589999999999999999999999999988653
No 337
>PLN03000 amine oxidase
Probab=90.88 E-value=0.31 Score=45.55 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+..|..|.+...+|++++.++
T Consensus 186 ~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 217 (881)
T PLN03000 186 SVVIVGAGLSGLAAARQLMRFGFKVTVLEGRK 217 (881)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence 58999999999999999999888999998764
No 338
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=90.79 E-value=0.3 Score=43.38 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++.+.+|.++.+.+
T Consensus 9 DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~ 40 (557)
T PRK07843 9 DVVVVGSGAAGMVAALTAAHRGLSTVVVEKAP 40 (557)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 58999999999999999999988999998754
No 339
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=90.73 E-value=0.31 Score=39.33 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=29.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|+.|.-+|..|++.+.+|+++.|++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 58999999999999999999888999999853
No 340
>PRK13984 putative oxidoreductase; Provisional
Probab=90.69 E-value=0.3 Score=43.67 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=29.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|+.|+..|..|.+.+.+|+++.+.+.
T Consensus 285 ~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~ 317 (604)
T PRK13984 285 KVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK 317 (604)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 589999999999999999999989999987653
No 341
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.68 E-value=0.32 Score=43.56 Aligned_cols=32 Identities=9% Similarity=0.286 Sum_probs=28.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|.++++.+.+|.|+.+..
T Consensus 9 DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~ 40 (588)
T PRK08958 9 DAVVIGAGGAGMRAALQISQSGQSCALLSKVF 40 (588)
T ss_pred CEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 59999999999999999999888899988753
No 342
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=90.65 E-value=0.37 Score=43.05 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+-.|.++++.+.+|.++.+.+
T Consensus 14 dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~ 45 (581)
T PRK06134 14 DVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDP 45 (581)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 58999999999999999999988999998754
No 343
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=90.63 E-value=0.35 Score=42.94 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=30.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|++|.=.|..|++...+|.++.++..
T Consensus 2 dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~ 34 (544)
T TIGR02462 2 DVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAA 34 (544)
T ss_pred cEEEECCchHHHHHHHHHHHCCCeEEEEeccCc
Confidence 589999999999999999999899999998753
No 344
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=90.61 E-value=0.38 Score=42.39 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=28.6
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~ 32 (182)
+++|||+|.+|.=+|..|++.. .+|.+++.++
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 5899999999999999999977 4899998764
No 345
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.61 E-value=0.29 Score=39.70 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=30.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|.|||+|..|..+|..++..+.+|++..+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 589999999999999999999999999988653
No 346
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=90.41 E-value=0.35 Score=43.74 Aligned_cols=32 Identities=9% Similarity=0.180 Sum_probs=28.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|.++++.+.+|.++....
T Consensus 52 DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~ 83 (635)
T PLN00128 52 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 83 (635)
T ss_pred CEEEECccHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 59999999999999999999877899988754
No 347
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.38 E-value=0.33 Score=39.25 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=29.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.-|..+|..++..+.+|++..+.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 58999999999999999999888999998764
No 348
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=90.38 E-value=0.35 Score=41.86 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=28.4
Q ss_pred CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~ 32 (182)
+|+|||||.||+-.|-.|++.. .+|++++..+
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~ 35 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 5899999999999999999988 6788888764
No 349
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=90.32 E-value=0.42 Score=31.38 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=27.0
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEec
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSR 30 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r 30 (182)
+++|+|.|..|.-++..|.+. ..+|+++.|
T Consensus 25 ~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 25 TVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 589999999999999999997 778988877
No 350
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=90.25 E-value=3.7 Score=35.38 Aligned_cols=82 Identities=15% Similarity=0.031 Sum_probs=49.6
Q ss_pred EEEcCCccHHHHH-HHHh----ccCCeEEEEeccCCCCCC--------CCCCCC-CCeEEcceeEEeeC-CCeEE---Ec
Q 037525 3 ILVGSSASAVDIC-RDLA----GVAKEVHLVSRSVADGTY--------EKQPGF-DNMWLHSMIESAHD-NGAVV---FR 64 (182)
Q Consensus 3 ~VVG~G~sg~d~A-~~l~----~~a~~V~l~~r~~~~~~~--------~~~~~~-~~i~~~~~v~~~~~-~~~v~---~~ 64 (182)
+|++.|..|+|.+ ..++ +.+.+|+++.+.++.... ..+... .++.....|.++.. ++++. ..
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~ 298 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTR 298 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEee
Confidence 5889999999998 4443 357789999776653210 001111 13445566766652 22332 23
Q ss_pred CCc--EEecCEEEEecccccCC
Q 037525 65 NGH--TVHADVILHCTGYKYHF 84 (182)
Q Consensus 65 dg~--~~~~D~vi~atG~~~~~ 84 (182)
+|+ .+++|.||+|||...+.
T Consensus 299 ~g~~~~i~AD~VVLAtGrf~s~ 320 (422)
T PRK05329 299 NHGDIPLRARHFVLATGSFFSG 320 (422)
T ss_pred CCceEEEECCEEEEeCCCcccC
Confidence 453 36899999999976553
No 351
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.24 E-value=0.34 Score=43.20 Aligned_cols=32 Identities=13% Similarity=0.333 Sum_probs=27.5
Q ss_pred CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|.++++.. .+|.++.+..
T Consensus 5 DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~ 38 (575)
T PRK05945 5 DVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTH 38 (575)
T ss_pred cEEEECccHHHHHHHHHHHHhcCCCcEEEEeccC
Confidence 5999999999999999999753 5899988754
No 352
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=90.22 E-value=0.45 Score=35.23 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.5
Q ss_pred EEEEcC-CccHHHHHHHHhccCCeEEEEeccCC
Q 037525 2 IILVGS-SASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 2 V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
|+|+|+ |..|..++.+|.+...+|+.+.|++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 799997 99999999999999999999999754
No 353
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.97 E-value=0.38 Score=41.26 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=29.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|+|+|.+|..+|..|++.+.+|+++.+..
T Consensus 7 ~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 7 KVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 58999999999999999999999999998864
No 354
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.90 E-value=0.38 Score=41.43 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=29.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||.|.||+-.|..|.+.+.+|+++.++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999999999998754
No 355
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.89 E-value=0.41 Score=39.16 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|+|+|..|.=+|..|++.+.+|+++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 68999999999999999999888999999964
No 356
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=89.80 E-value=0.45 Score=42.88 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=26.7
Q ss_pred CEEEEcCCccHHHHHHHHh----ccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLA----GVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~----~~a~~V~l~~r~ 31 (182)
.|+|||+|.+|+=.|+.++ +.+.+|.++.+.
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~ 35 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKA 35 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEcc
Confidence 5999999999999999998 556689988764
No 357
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=89.71 E-value=0.41 Score=38.72 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=28.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSR 30 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r 30 (182)
+|+|+|+|..|.-+|..|++.+.+|+++.|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 589999999999999999998889999988
No 358
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.63 E-value=0.42 Score=42.70 Aligned_cols=31 Identities=6% Similarity=0.222 Sum_probs=27.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|.++++. .+|.++.+..
T Consensus 7 DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~ 37 (583)
T PRK08205 7 DVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLY 37 (583)
T ss_pred cEEEECccHHHHHHHHHHHhC-CCEEEEeCCC
Confidence 599999999999999999987 6899988753
No 359
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=89.61 E-value=0.54 Score=38.22 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=29.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
.|+|||+|..|+-.|..|...+.+|+++.++.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 38999999999999999999999999999864
No 360
>PLN02815 L-aspartate oxidase
Probab=89.59 E-value=0.43 Score=42.86 Aligned_cols=31 Identities=13% Similarity=0.341 Sum_probs=27.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++.+ +|.++.+..
T Consensus 31 DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~ 61 (594)
T PLN02815 31 DFLVIGSGIAGLRYALEVAEYG-TVAIITKDE 61 (594)
T ss_pred CEEEECccHHHHHHHHHHhhCC-CEEEEECCC
Confidence 5999999999999999999988 788887654
No 361
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.50 E-value=0.52 Score=33.57 Aligned_cols=31 Identities=16% Similarity=0.470 Sum_probs=27.0
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~ 31 (182)
+|+|+|.|..|.++|..|++. ..+++++...
T Consensus 4 ~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 4 RVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred EEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 589999999999999999995 4578888764
No 362
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.43 E-value=0.5 Score=32.41 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=26.5
Q ss_pred EEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 2 IILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 2 V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
|+|+|.|..|..++..|.+...+|.++.+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7899999999999999999666899998754
No 363
>PRK07395 L-aspartate oxidase; Provisional
Probab=89.38 E-value=0.45 Score=42.29 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=26.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|.++++ ..+|.++.+..
T Consensus 11 DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~ 41 (553)
T PRK07395 11 DVLVVGSGAAGLYAALCLPS-HLRVGLITKDT 41 (553)
T ss_pred CEEEECccHHHHHHHHHhhc-CCCEEEEEccC
Confidence 59999999999999999876 55899988754
No 364
>PRK09077 L-aspartate oxidase; Provisional
Probab=89.38 E-value=0.41 Score=42.29 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=27.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++. .+|.++.+..
T Consensus 10 DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~ 40 (536)
T PRK09077 10 DVLIIGSGAAGLSLALRLAEH-RRVAVLSKGP 40 (536)
T ss_pred CEEEECchHHHHHHHHHHHHC-CCEEEEeccC
Confidence 599999999999999999987 5798887754
No 365
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.35 E-value=0.45 Score=39.42 Aligned_cols=32 Identities=9% Similarity=0.005 Sum_probs=29.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||+|..|..+|..++..+.+|++..+.+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 58999999999999999999999999998754
No 366
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=89.34 E-value=0.57 Score=39.95 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=30.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD 34 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~ 34 (182)
+|+|||||.+|.-.|+.|.+.+=+|.+...+...
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 4 KVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 5999999999999999999999889988876543
No 367
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=89.32 E-value=0.42 Score=31.66 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=26.9
Q ss_pred CEEEEcCCccHHHHHHHHhccC---CeEEEE-ecc
Q 037525 1 VIILVGSSASAVDICRDLAGVA---KEVHLV-SRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a---~~V~l~-~r~ 31 (182)
+|.|||+|+-|.-++.-|.+.. .+|+++ .|+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~ 35 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS 35 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc
Confidence 5889999999999999999988 789877 453
No 368
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.20 E-value=0.4 Score=38.78 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=29.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||+|..|..+|..|++.+.+|++..+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 58999999999999999999888999998764
No 369
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=89.17 E-value=0.63 Score=40.29 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=49.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCCCCCeEEcceeEEeeCCCeEEEcCCc-----EEecCEEE
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRNGH-----TVHADVIL 75 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~~~~i~~~~~v~~~~~~~~v~~~dg~-----~~~~D~vi 75 (182)
+|+|+|-|-||.-+|..|.+.+.+|+++..++........ .... .++.+..|+ ..++|.||
T Consensus 9 kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~-------------~~~~-~~i~~~~g~~~~~~~~~~d~vV 74 (448)
T COG0771 9 KVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQ-------------PLLL-EGIEVELGSHDDEDLAEFDLVV 74 (448)
T ss_pred EEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhh-------------hhhc-cCceeecCccchhccccCCEEE
Confidence 5899999999999999999999999999865432111000 0001 122222221 23589999
Q ss_pred EecccccCCCCCC
Q 037525 76 HCTGYKYHFPFLE 88 (182)
Q Consensus 76 ~atG~~~~~~~l~ 88 (182)
.+-|..++.|.+.
T Consensus 75 ~SPGi~~~~p~v~ 87 (448)
T COG0771 75 KSPGIPPTHPLVE 87 (448)
T ss_pred ECCCCCCCCHHHH
Confidence 9999988877543
No 370
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.16 E-value=0.46 Score=42.02 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=26.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+ +.+.+|.++.+..
T Consensus 9 DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~ 39 (543)
T PRK06263 9 DVLIIGSGGAGARAAIEA-ERGKNVVIVSKGL 39 (543)
T ss_pred CEEEECccHHHHHHHHHH-hcCCCEEEEEccC
Confidence 599999999999999999 7677899988753
No 371
>PLN02785 Protein HOTHEAD
Probab=89.10 E-value=0.51 Score=42.29 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=28.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+++|||+|.+|+=+|..|++ ..+|.++++++
T Consensus 57 D~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 57 DYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred CEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 48999999999999999999 57899998875
No 372
>PRK06175 L-aspartate oxidase; Provisional
Probab=89.01 E-value=0.46 Score=40.83 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=26.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+. .+.+|.++.+.+
T Consensus 6 DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~ 36 (433)
T PRK06175 6 DVLIVGSGVAGLYSALNLR-KDLKILMVSKGK 36 (433)
T ss_pred cEEEECchHHHHHHHHHhc-cCCCEEEEecCC
Confidence 5999999999999999975 456899988754
No 373
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=88.96 E-value=0.54 Score=39.22 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=29.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
.|+|||||..|+-.+..+.+.+|++.++.++.
T Consensus 4 Dv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 4 DVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 48999999999999999999999999988865
No 374
>PRK08071 L-aspartate oxidase; Provisional
Probab=88.83 E-value=0.5 Score=41.50 Aligned_cols=31 Identities=19% Similarity=0.497 Sum_probs=26.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|.++++ ..+|.++.+..
T Consensus 5 DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~ 35 (510)
T PRK08071 5 DVIIIGSGIAALTVAKELCH-EYNVIIITKKT 35 (510)
T ss_pred CEEEECccHHHHHHHHHhhc-CCCEEEEeccC
Confidence 59999999999999999987 56899888754
No 375
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=88.75 E-value=0.51 Score=42.14 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=28.1
Q ss_pred CEEEEcCCccHHHHHHHHhccC----CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA----KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a----~~V~l~~r~~ 32 (182)
+|+|||+|.+|+-.|..|++.+ .+|+++.+.+
T Consensus 24 ~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~ 59 (576)
T PRK13977 24 KAYIIGSGLASLAAAVFLIRDGQMPGENITILEELD 59 (576)
T ss_pred eEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCC
Confidence 5899999999999999999864 5899998865
No 376
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.75 E-value=0.48 Score=38.36 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||+|.-|..+|..++..+.+|++..+.+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 58999999999999999999988999998764
No 377
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=88.74 E-value=0.66 Score=34.76 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=26.1
Q ss_pred CEEEEcCCcc-HHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSAS-AVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~s-g~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||+|.. |.-+|..|.+...+|+++.|.
T Consensus 46 ~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 46 KVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred EEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 5899999985 888999999877689888874
No 378
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=88.69 E-value=0.53 Score=44.27 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=28.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|.++++.+.+|.++.+..
T Consensus 15 DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~ 46 (897)
T PRK13800 15 DVLVIGGGTAGTMAALTAAEHGANVLLLEKAH 46 (897)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 58999999999999999999888899887643
No 379
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=88.65 E-value=0.59 Score=38.28 Aligned_cols=32 Identities=28% Similarity=0.204 Sum_probs=29.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|..|.=+|..|++.+.+|+++.|+.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 58999999999999999999888999999865
No 380
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=88.58 E-value=0.65 Score=41.41 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=28.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+| +|+-.|...++.+.+|.++.+.+
T Consensus 18 DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~ 48 (564)
T PRK12845 18 DLLVVGSG-TGMAAALAAHELGLSVLIVEKSS 48 (564)
T ss_pred CEEEECCc-HHHHHHHHHHHCCCcEEEEecCC
Confidence 58999999 89999999999888999999864
No 381
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=88.54 E-value=0.56 Score=36.75 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=29.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+++|||+|.-|..+|..|++.+..|.++.+.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 58999999999999999999999999998864
No 382
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.53 E-value=0.5 Score=38.24 Aligned_cols=32 Identities=31% Similarity=0.322 Sum_probs=29.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||+|..|..+|..++..+.+|+++.+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 58999999999999999999888999998764
No 383
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=88.36 E-value=0.7 Score=40.99 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=29.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+++|||+|..|.-+|..|++...+|.++++++
T Consensus 9 D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 9 DYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 48999999999999999998888999999884
No 384
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=88.33 E-value=2.6 Score=36.35 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD 34 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~ 34 (182)
+|+|+|.|=.|+-++..|-..--.|+++..+..+
T Consensus 57 ~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyF 90 (491)
T KOG2495|consen 57 RVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYF 90 (491)
T ss_pred eEEEEcCchHHHHHHHhccccccceEEeccccce
Confidence 6999999999999999988877789998877654
No 385
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.30 E-value=0.52 Score=38.52 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=29.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||+|..|.-+|..|+..+.+|++..|.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 58999999999999999999988999998864
No 386
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=88.30 E-value=0.61 Score=41.63 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=28.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+-.|..+++...+|.++.+.+
T Consensus 18 dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~ 49 (578)
T PRK12843 18 DVIVIGAGAAGMSAALFAAIAGLKVLLVERTE 49 (578)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 58999999999999999999888999998753
No 387
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=88.19 E-value=0.58 Score=41.85 Aligned_cols=32 Identities=13% Similarity=0.264 Sum_probs=27.3
Q ss_pred CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++.+ .+|.|+.+..
T Consensus 6 DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~ 39 (582)
T PRK09231 6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY 39 (582)
T ss_pred eEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence 5999999999999999999753 4799988754
No 388
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=88.07 E-value=0.7 Score=37.31 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=28.3
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~ 32 (182)
+|+|||.|-.|.++|..|++.+ .+++++....
T Consensus 32 ~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 32 HICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 6999999999999999999976 7899998653
No 389
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=88.06 E-value=0.52 Score=40.48 Aligned_cols=31 Identities=26% Similarity=0.316 Sum_probs=25.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeE--EEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEV--HLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V--~l~~r~ 31 (182)
+|+|||||.||.-+|-.|++...++ ++.+..
T Consensus 13 ~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~ 45 (491)
T KOG1276|consen 13 TVAVVGGGISGLCAAYYLARLGPDVTITLFEAS 45 (491)
T ss_pred eEEEECCchhHHHHHHHHHhcCCCceEEEEecC
Confidence 5899999999999999999976554 445543
No 390
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=87.78 E-value=1.1 Score=32.76 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=22.8
Q ss_pred ceeEEeeC--CC-eEEEcCCcEEecCEEEEeccc
Q 037525 50 SMIESAHD--NG-AVVFRNGHTVHADVILHCTGY 80 (182)
Q Consensus 50 ~~v~~~~~--~~-~v~~~dg~~~~~D~vi~atG~ 80 (182)
..|..+.. ++ .+++.||..+.+|.||+|||.
T Consensus 122 ~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 122 AEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred eEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 45555542 22 477789989999999999995
No 391
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.59 E-value=0.82 Score=35.19 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=27.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCC-eEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~ 31 (182)
+|+|||+|-.|.++|..|++.+- +++++.+.
T Consensus 23 ~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 23 TVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 69999999999999999999765 68888775
No 392
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=87.39 E-value=0.71 Score=44.73 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=28.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|.+.++.+.+|.++.+.+
T Consensus 411 DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~ 442 (1167)
T PTZ00306 411 RVIVVGGGLAGCSAAIEAASCGAQVILLEKEA 442 (1167)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEccC
Confidence 59999999999999999999888999988753
No 393
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=87.39 E-value=0.67 Score=37.58 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=29.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||+|.-|..+|..++..+.+|++..+++
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 48999999999999999999988999998764
No 394
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=87.32 E-value=0.81 Score=35.57 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=28.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||||..|.-=|..|.+.+.+|+++....
T Consensus 14 ~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~ 45 (210)
T COG1648 14 KVLVVGGGSVALRKARLLLKAGADVTVVSPEF 45 (210)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc
Confidence 58999999999999999999999999987643
No 395
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=87.31 E-value=0.68 Score=41.41 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=27.2
Q ss_pred CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++.. .+|.++.+..
T Consensus 5 DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~ 38 (580)
T TIGR01176 5 DIAVIGAGGAGLRAAIAAAEANPHLDVALISKVY 38 (580)
T ss_pred eEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence 5899999999999999998753 4799988754
No 396
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=87.30 E-value=1.5 Score=36.09 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=27.2
Q ss_pred CEEEEcC-CccHHHHHHHHhcc--CCeEEEEeccC
Q 037525 1 VIILVGS-SASAVDICRDLAGV--AKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~-G~sg~d~A~~l~~~--a~~V~l~~r~~ 32 (182)
+|.|+|+ |..|..+|..|+.. ..+|.++.+..
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~ 36 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPK 36 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 5899998 99999999999985 44699998843
No 397
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=87.27 E-value=0.87 Score=40.64 Aligned_cols=33 Identities=15% Similarity=0.327 Sum_probs=29.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|.+|+=.|.++++...+|.++.+-.+
T Consensus 8 DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~ 40 (562)
T COG1053 8 DVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP 40 (562)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 589999999999999999999999999887543
No 398
>PRK12839 hypothetical protein; Provisional
Probab=87.24 E-value=0.84 Score=40.77 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=28.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|..+++...+|.++.+..
T Consensus 10 dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~ 41 (572)
T PRK12839 10 DVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAS 41 (572)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 58999999999999999999888899998753
No 399
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=87.10 E-value=0.83 Score=34.59 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=28.0
Q ss_pred CEEEEcC-CccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|+|+ |..|..++..|++.+.+|+++.|..
T Consensus 30 ~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 30 TAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4899997 9999999999999888999988753
No 400
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=87.05 E-value=0.67 Score=38.96 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=25.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSR 30 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r 30 (182)
+|+|||+|-||.-.|-.|++.. +|+|.+-
T Consensus 10 ~IAVIGsGisGLSAA~~Ls~rh-dVTLfEA 38 (447)
T COG2907 10 KIAVIGSGISGLSAAWLLSRRH-DVTLFEA 38 (447)
T ss_pred ceEEEcccchhhhhHHhhhccc-ceEEEec
Confidence 5899999999999999999876 4887764
No 401
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=86.96 E-value=1 Score=32.24 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=27.0
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~ 31 (182)
+|+|||.|-.|.++|..|++.+ .+++++...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 6999999999999999999965 478888764
No 402
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=86.94 E-value=0.83 Score=39.25 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=28.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|.-.|..+++...+|.++.++.
T Consensus 2 Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 2 DVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 58999999999999999999888899998764
No 403
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=86.91 E-value=1 Score=38.92 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=29.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|.+|+=.|.+|.+.+-+|.+..-++.
T Consensus 9 ~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r 41 (450)
T COG1231 9 DVIIVGAGLAGLSAAYELKKAGYQVQILEARDR 41 (450)
T ss_pred cEEEECCchHHHHHHHHHhhcCcEEEEEeccCC
Confidence 589999999999999999999999998875543
No 404
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.85 E-value=0.83 Score=37.56 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||+|+-|.-+|..|++.+.+|+++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 58999999999999999999988999998854
No 405
>PLN02976 amine oxidase
Probab=86.58 E-value=0.84 Score=45.06 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+-.|..|.+.+.+|+++.+++
T Consensus 695 dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~ 726 (1713)
T PLN02976 695 KIIVVGAGPAGLTAARHLQRQGFSVTVLEARS 726 (1713)
T ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEeecc
Confidence 58999999999999999999888999998754
No 406
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=86.55 E-value=0.97 Score=33.89 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=28.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||.|..|..+|..+...+-+|+...|..
T Consensus 38 tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~ 69 (178)
T PF02826_consen 38 TVGIIGYGRIGRAVARRLKAFGMRVIGYDRSP 69 (178)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEESSC
T ss_pred EEEEEEEcCCcCeEeeeeecCCceeEEecccC
Confidence 58999999999999999999999999888754
No 407
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=86.51 E-value=0.84 Score=32.91 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=27.3
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~ 32 (182)
+|+|+|+|..|..++..|.+. ..+|++..|..
T Consensus 21 ~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 21 KVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 489999999999999999987 47888887753
No 408
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.37 E-value=0.85 Score=37.19 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=28.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||+|..|..+|..|++.+.+|+++.+.+
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 58999999999999999999888899988754
No 409
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=86.25 E-value=1.1 Score=32.42 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=27.9
Q ss_pred CEEEEcC-CccHHHHHHHHhc--cCCeEEEEeccC
Q 037525 1 VIILVGS-SASAVDICRDLAG--VAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~-G~sg~d~A~~l~~--~a~~V~l~~r~~ 32 (182)
+|.|||+ |+.|..+|..|.. .++++.|+.+.+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 5899999 9999999999987 577899988764
No 410
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=86.12 E-value=1 Score=34.24 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=40.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-C--CCCCCCCCCeEEcceeEEeeCCCeEEEcC-CcE-E-ecCEE
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-T--YEKQPGFDNMWLHSMIESAHDNGAVVFRN-GHT-V-HADVI 74 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~--~~~~~~~~~i~~~~~v~~~~~~~~v~~~d-g~~-~-~~D~v 74 (182)
+|.|||.|..|.-.|..+++.+.+|+.+...+... . -+..|-+ .-.+...+++....+.+.+.+ .+. + ++|++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~-E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIY-EPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS--CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhcccccc-ccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 58999999999999999999999999987654310 0 0111110 000111122222123566653 333 3 69999
Q ss_pred EEeccc
Q 037525 75 LHCTGY 80 (182)
Q Consensus 75 i~atG~ 80 (182)
|+|.+-
T Consensus 81 ~I~VpT 86 (185)
T PF03721_consen 81 FICVPT 86 (185)
T ss_dssp EE----
T ss_pred EEecCC
Confidence 999875
No 411
>PRK07512 L-aspartate oxidase; Provisional
Probab=86.07 E-value=0.82 Score=40.21 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=25.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|.+|+=.|.++++ .+|.++.+..
T Consensus 11 DVlVIG~G~AGl~AAl~Aa~--~~V~lleK~~ 40 (513)
T PRK07512 11 RPVIVGGGLAGLMAALKLAP--RPVVVLSPAP 40 (513)
T ss_pred CEEEECchHHHHHHHHHhCc--CCEEEEECCC
Confidence 59999999999999999984 4788887754
No 412
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=85.94 E-value=0.89 Score=37.01 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=28.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|+|.|..|..+|..|...+.+|+++.|..
T Consensus 153 ~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 153 NVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred EEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 58999999999999999999888999988864
No 413
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=85.94 E-value=0.91 Score=37.01 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=29.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||+|+-|.-+|..|++.+.+|+++.|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 58999999999999999999888999988854
No 414
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=85.72 E-value=1 Score=38.42 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=27.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCC-eEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~ 32 (182)
+|||+|.|+.|+++|..+.+..+ +|=+..|..
T Consensus 3 ~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S 35 (429)
T PF10100_consen 3 NVLIVGTGPVAIQLAVILKKHGNCRVGIVGRES 35 (429)
T ss_pred ceEEEcCCHHHHHHHHHHHhccCceeeeecCcc
Confidence 69999999999999999998655 688888854
No 415
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=85.41 E-value=0.47 Score=41.95 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=29.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|||||||.+|.-+|++-+..+-+|-|+.+.+
T Consensus 69 DVLIIGGGAtGaGcALDA~TRGLktaLVE~~D 100 (680)
T KOG0042|consen 69 DVLIIGGGATGAGCALDAATRGLKTALVEAGD 100 (680)
T ss_pred cEEEECCCccCcceeehhhcccceeEEEeccc
Confidence 58999999999999999999999999998865
No 416
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.37 E-value=0.89 Score=36.60 Aligned_cols=32 Identities=22% Similarity=0.161 Sum_probs=28.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||+|..|..+|..++..+.+|+++.+.+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 48999999999999999999888899987654
No 417
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.33 E-value=1.3 Score=33.17 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=27.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCC-eEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~ 31 (182)
+|+|||.|-.|.++|..|++.+- +++++...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 69999999999999999999654 68888765
No 418
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=85.31 E-value=1.2 Score=37.39 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=28.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
.|+|||+|..|+=.|.||++.+++|.++.-..
T Consensus 7 dvivvgaglaglvaa~elA~aG~~V~ildQEg 38 (552)
T COG3573 7 DVIVVGAGLAGLVAAAELADAGKRVLILDQEG 38 (552)
T ss_pred cEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence 48999999999999999999999999887543
No 419
>PRK00536 speE spermidine synthase; Provisional
Probab=84.96 E-value=1.3 Score=35.74 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=25.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
||||||||+=| .|.|+.++..+|+++.-.+
T Consensus 75 ~VLIiGGGDGg--~~REvLkh~~~v~mVeID~ 104 (262)
T PRK00536 75 EVLIVDGFDLE--LAHQLFKYDTHVDFVQADE 104 (262)
T ss_pred eEEEEcCCchH--HHHHHHCcCCeeEEEECCH
Confidence 69999999987 5899999877899987644
No 420
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=84.79 E-value=1.2 Score=35.92 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=28.4
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~ 32 (182)
+|+|+|+|-.|.-++..|+... .+|+++.|..
T Consensus 125 ~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 125 RILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4899999999999999999876 7899998864
No 421
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=84.76 E-value=1.6 Score=33.47 Aligned_cols=31 Identities=16% Similarity=0.440 Sum_probs=27.0
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~ 31 (182)
+|+|||.|-.|.|+|..|+.. .++++++...
T Consensus 21 ~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 21 KVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 699999999999999999995 4578888765
No 422
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=84.67 E-value=1.2 Score=36.77 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=29.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||.|..|.-+|..|++.+.+|+++.|+.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 58999999999999999999988999998854
No 423
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=84.53 E-value=1.1 Score=39.29 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=28.4
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|..|+-.|+.|.+. .+|+++.+++.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 489999999999999999998 67999988753
No 424
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=84.42 E-value=1.4 Score=33.76 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=27.4
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~ 31 (182)
+|+|||.|-.|.++|..|+..+ .+++++.+.
T Consensus 23 ~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 23 HVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 6999999999999999999965 578888775
No 425
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=84.27 E-value=1.5 Score=34.34 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=26.5
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~ 31 (182)
+|+|||.|-.|.++|..|++.+ .+++++...
T Consensus 23 ~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 23 RVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 6999999999999999999964 478887654
No 426
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=84.23 E-value=1.6 Score=37.94 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=24.9
Q ss_pred CEEEEcCCccHHHHHHHHhc-cCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAG-VAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~-~a~~V~l~~r~ 31 (182)
+|+|||+|.+|+-.|..|.+ ....|++..-+
T Consensus 23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~ 54 (498)
T KOG0685|consen 23 KIVIIGAGIAGLAAATRLLENGFIDVLILEAS 54 (498)
T ss_pred eEEEECCchHHHHHHHHHHHhCCceEEEEEec
Confidence 69999999999999999995 44566666543
No 427
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.09 E-value=16 Score=31.06 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=27.3
Q ss_pred EEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 2 IILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 2 V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
-+|||||.-|+-.|..-++++.+|-++...
T Consensus 23 ylvIGgGSGGvasARrAa~~GAkv~l~E~~ 52 (478)
T KOG0405|consen 23 YLVIGGGSGGVASARRAASHGAKVALCELP 52 (478)
T ss_pred eEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence 589999999999999999999999998765
No 428
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.92 E-value=1.5 Score=35.99 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=28.0
Q ss_pred CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~ 32 (182)
+|.|||+|..|.-+|..|+... .+|.++.+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 5899999999999999999865 6899998764
No 429
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=83.78 E-value=1.7 Score=34.33 Aligned_cols=31 Identities=19% Similarity=0.463 Sum_probs=26.8
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~ 31 (182)
+|+|||.|-.|.|++..|+.. ..+++++...
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 699999999999999999985 4578888764
No 430
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=83.67 E-value=1.5 Score=36.58 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=28.0
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~ 32 (182)
+|+|||.|-.|..+|..|++.+ .+++++.+..
T Consensus 26 ~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 26 HVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 6999999999999999999976 4788888753
No 431
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=83.61 E-value=1.5 Score=32.46 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=27.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|+|+|++|...+..+.....+|+......
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 58999999999999999999988888887643
No 432
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=83.55 E-value=1.5 Score=36.78 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=29.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
.|-|||+|..|.|.|-.+++.+-.|.|...++.
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred ceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 378999999999999999999999999987653
No 433
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.52 E-value=1.5 Score=36.02 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=29.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||+|+-|.-+|..|++.+.+|++..|++
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 58999999999999999999888999998854
No 434
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.46 E-value=1.2 Score=38.01 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=28.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|+|+|..|..+|..|.+...+|+++.+.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 58999999999999999999888899988743
No 435
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=83.46 E-value=1.3 Score=35.72 Aligned_cols=32 Identities=28% Similarity=0.195 Sum_probs=28.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||.|..|.-+|..|.+.+.+|+++.|++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999888899888754
No 436
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=83.40 E-value=1.6 Score=36.05 Aligned_cols=31 Identities=16% Similarity=0.424 Sum_probs=26.7
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~ 31 (182)
+|+|||.|-.|.|+|..|+.. ..+++++...
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 699999999999999999985 4578888764
No 437
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=83.39 E-value=2 Score=32.95 Aligned_cols=31 Identities=16% Similarity=0.345 Sum_probs=26.9
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~ 31 (182)
+|+|||.|..|.|+|..|+..+ .+++++...
T Consensus 23 ~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 23 RILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred cEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 6999999999999999999954 578888764
No 438
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.31 E-value=1.8 Score=35.28 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=27.4
Q ss_pred CEEEEcCCc-cHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSA-SAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~-sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||.|. .|.-+|..|.+....|++++++
T Consensus 160 ~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~ 191 (286)
T PRK14175 160 NAVVIGRSHIVGQPVSKLLLQKNASVTILHSR 191 (286)
T ss_pred EEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence 589999998 9999999999887789998874
No 439
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=83.17 E-value=1.3 Score=36.40 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=27.3
Q ss_pred CEEEEcCCccHHHHHHHHhc-cCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAG-VAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~-~a~~V~l~~r~~ 32 (182)
+|+|||+|..|.-++..|.. .+++|+++.|..
T Consensus 180 ~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 180 KVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred EEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 58999999999999999987 457899888854
No 440
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=83.13 E-value=1.4 Score=35.60 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=28.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||.|+.|..+|..|++.+.+|++..|++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 68999999999999999999888999887764
No 441
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=83.13 E-value=1.4 Score=30.84 Aligned_cols=32 Identities=31% Similarity=0.309 Sum_probs=24.2
Q ss_pred CEEEEc-CCccHHHHHHHHhccC--CeEEEEeccC
Q 037525 1 VIILVG-SSASAVDICRDLAGVA--KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG-~G~sg~d~A~~l~~~a--~~V~l~~r~~ 32 (182)
||.||| .|+.|.++...|.+.- +.+.++.++.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 689999 9999999999999843 2344555543
No 442
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.03 E-value=2.4 Score=35.09 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=26.6
Q ss_pred CEEEEcC-CccHHHHHHHHhc--cCC-----eEEEEeccC
Q 037525 1 VIILVGS-SASAVDICRDLAG--VAK-----EVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~-G~sg~d~A~~l~~--~a~-----~V~l~~r~~ 32 (182)
+|.|||+ |+.|..+|..|+. .+. ++.|+...+
T Consensus 4 KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~ 43 (322)
T cd01338 4 RVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQ 43 (322)
T ss_pred EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCC
Confidence 5899999 9999999999985 456 788887744
No 443
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=83.00 E-value=1.8 Score=36.19 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=27.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCC-eEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~ 31 (182)
+|+|||+|-.|..+|..|++.+- +++++.+.
T Consensus 26 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 26 HVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 69999999999999999999654 78888874
No 444
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=82.96 E-value=1.7 Score=33.66 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=28.1
Q ss_pred CEEEEc-CCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVG-SSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG-~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.||| .|+-|.-+|..|++.+.+|++..|++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 69999999999999888899887754
No 445
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=82.92 E-value=1.7 Score=35.53 Aligned_cols=32 Identities=16% Similarity=0.375 Sum_probs=29.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|+|.|..|.-++..|...+.+|+++.|+.
T Consensus 154 kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 154 NVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999888999998864
No 446
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=82.71 E-value=1.7 Score=33.39 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=27.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|+|.|+.|.-+|..|.+.+.+|+++.+.
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4899999999999999999988899877654
No 447
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.25 E-value=2 Score=36.56 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=28.9
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~ 32 (182)
+|+|+|+|..|.=+|..|++.. .+|++..|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 6899999999999999999866 7899999973
No 448
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=81.92 E-value=2 Score=35.08 Aligned_cols=33 Identities=12% Similarity=0.289 Sum_probs=28.2
Q ss_pred CEEEEcCCccHHHHHHHHhccC--CeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~~ 33 (182)
+|+|||+|..|.-+|..|+... .++.++.+...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 5899999999999999999755 68999988543
No 449
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=81.80 E-value=18 Score=31.07 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=28.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|||+|+-|.-.|..-++.+-+...+..+..
T Consensus 41 DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~ 73 (506)
T KOG1335|consen 41 DVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGT 73 (506)
T ss_pred CEEEECCCCchHHHHHHHHHhcceeEEEeccCc
Confidence 589999999999999999998887777776554
No 450
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=81.68 E-value=1.7 Score=34.02 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=27.8
Q ss_pred CEEEEcCCccHHHHHHHHhccC-C--eEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA-K--EVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~--~V~l~~r~~ 32 (182)
+|+|+|+|-.|.-+|..|.+.+ + +++++.|..
T Consensus 27 rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 27 KIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred EEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 5899999999999999999854 4 799998874
No 451
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=81.66 E-value=1.8 Score=36.48 Aligned_cols=32 Identities=9% Similarity=0.322 Sum_probs=28.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|||+|..|.-.+..+...+.+|+++.|+.
T Consensus 169 ~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 169 DVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 58999999999999999998877899988753
No 452
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=81.65 E-value=2.1 Score=34.98 Aligned_cols=31 Identities=16% Similarity=0.447 Sum_probs=26.3
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~ 31 (182)
+|+|||+|-.|.|++..|+.. ..+++++...
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 699999999999999999985 3578887654
No 453
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=81.58 E-value=1.8 Score=37.14 Aligned_cols=32 Identities=13% Similarity=0.275 Sum_probs=27.9
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~ 32 (182)
+|+|||+|..|.-++..|...+ .+|+++.|..
T Consensus 182 ~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~ 214 (417)
T TIGR01035 182 KALLIGAGEMGELVAKHLLRKGVGKILIANRTY 214 (417)
T ss_pred EEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 5899999999999999998866 7899988754
No 454
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=81.51 E-value=2 Score=36.64 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=29.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||.|+.|.-+|..|++.+.+|+++.+.+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 58999999999999999999888999988754
No 455
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.49 E-value=12 Score=32.17 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=30.0
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCCCC
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVADGT 36 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~~~ 36 (182)
+++.||-|++-+-+|..|.+.. .+.....|++.+.|
T Consensus 7 DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~W 43 (436)
T COG3486 7 DLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSW 43 (436)
T ss_pred eeEEEccCchHHHHHHHhccccCcceEEEecCCCCCc
Confidence 4688999999999999999976 56777888887654
No 456
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=81.48 E-value=1.8 Score=35.59 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=29.9
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|+|+|..|.=++..|++....|++..|.+.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 689999999999999999998888999988763
No 457
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=81.24 E-value=1.8 Score=37.95 Aligned_cols=32 Identities=6% Similarity=-0.010 Sum_probs=29.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||+|.-|.-+|..++..+.+|++..+.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 58999999999999999999988999988754
No 458
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.17 E-value=2 Score=35.06 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=29.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||.|+-|.-+|..|++.+.+|++..|+.
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 58999999999999999999998999888864
No 459
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=80.97 E-value=2.1 Score=36.96 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=26.5
Q ss_pred CEEEEcCCccHHHHHHHHhccC------CeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVA------KEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a------~~V~l~~r~ 31 (182)
+|+|||+|..|.|++..|+..+ .+++++...
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCC
Confidence 6999999999999999999854 478887764
No 460
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=80.93 E-value=1.7 Score=38.20 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=29.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||+|.-|..+|..++..+.+|++..+.+
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 58999999999999999999999999998864
No 461
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=80.78 E-value=2.6 Score=32.68 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=26.8
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~ 31 (182)
+|+|||.|-.|.++|..|++.+ .+++++...
T Consensus 30 ~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 30 KVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 6999999999999999999965 468888764
No 462
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.53 E-value=1.9 Score=39.67 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=29.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||+|.-|..||..++..+.+|++..+.+
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 58999999999999999999999999998765
No 463
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=80.47 E-value=2.6 Score=33.37 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=26.9
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~ 31 (182)
+|+|||.|-.|.++|..|++.+ .+++++...
T Consensus 26 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 26 RVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 6999999999999999999954 578888764
No 464
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.31 E-value=2.2 Score=36.91 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=28.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|+|.|.||+-+|..|.+.+.+|+++.+++
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999888999998654
No 465
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=80.22 E-value=2.6 Score=32.77 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=29.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+++|+|.|+.|.-+|..++....+|.+..|+.+
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCCCh
Confidence 478999999999999999999999999977765
No 466
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=80.13 E-value=2.2 Score=36.68 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=25.5
Q ss_pred CEEEEcCCccHHHHHHHHhcc----CCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGV----AKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~----a~~V~l~~r~ 31 (182)
.|+|||||+.|.-+|.+|... -++|.|..-.
T Consensus 38 dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 38 DVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred CEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 589999999999999999862 4578888655
No 467
>PRK10637 cysG siroheme synthase; Provisional
Probab=80.06 E-value=2.2 Score=37.07 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=27.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||||..|.-=+..|.+.+.+|+++...
T Consensus 14 ~vlvvGgG~vA~rk~~~ll~~ga~v~visp~ 44 (457)
T PRK10637 14 DCLLVGGGDVAERKARLLLDAGARLTVNALA 44 (457)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5999999999999889999988899998653
No 468
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=79.81 E-value=2.5 Score=33.49 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=26.7
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~ 31 (182)
+|+|||.|-.|.++|..|+..+ .+++++...
T Consensus 34 ~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 34 RVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 6999999999999999999954 578888664
No 469
>PRK08328 hypothetical protein; Provisional
Probab=79.63 E-value=2.9 Score=32.87 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=26.6
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~ 31 (182)
+|+|||.|-.|.++|..|++.+ .+++++...
T Consensus 29 ~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 29 KVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 6999999999999999999954 578888653
No 470
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.45 E-value=2.6 Score=36.69 Aligned_cols=31 Identities=16% Similarity=0.034 Sum_probs=28.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|+|.|.||.-.|..|.+.+.+|++...+
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~ 40 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAHLPAQALTLFC 40 (468)
T ss_pred EEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence 5899999999999999999998899998743
No 471
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=79.38 E-value=2.8 Score=35.07 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=28.6
Q ss_pred CEEEEcCCccHHHHHHHHhccC--------CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA--------KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a--------~~V~l~~r~~ 32 (182)
+|.|||+|+=|.-+|..|++.+ .+|++..|+.
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~ 40 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE 40 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc
Confidence 6899999999999999999877 8999998843
No 472
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.27 E-value=2.2 Score=36.48 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=28.1
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|+|+|.+|+-+|..|++.+.+|+++.+.
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~ 37 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGK 37 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4799999999999999999999999998764
No 473
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.24 E-value=2.9 Score=34.02 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=26.8
Q ss_pred CEEEEcCCc-cHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSA-SAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~-sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|||.|. .|.=+|..|.+....|++++|+
T Consensus 161 ~vvViG~gg~vGkpia~~L~~~gatVtv~~~~ 192 (283)
T PRK14192 161 HAVVVGRSAILGKPMAMMLLNANATVTICHSR 192 (283)
T ss_pred EEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 589999998 9999999998866689999873
No 474
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.05 E-value=2.7 Score=36.11 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=28.3
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|+|.|.+|+.+|..|++.+.+|+++....
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 58999999999999999999998999887543
No 475
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=78.78 E-value=3.1 Score=34.13 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=27.0
Q ss_pred CEEEEcCCccHHHHHHHHhccCC-eEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~ 32 (182)
+|.|||+|..|..+|..++..+. +|.++...+
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 58999999999999999998543 799988743
No 476
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=78.76 E-value=2.7 Score=34.11 Aligned_cols=32 Identities=6% Similarity=0.263 Sum_probs=27.5
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~ 32 (182)
+|+|+|+|-.|.-++..|+.. +++|+++.|..
T Consensus 129 ~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 129 RVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 489999999999999999975 45899998853
No 477
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=78.68 E-value=2.3 Score=39.09 Aligned_cols=32 Identities=9% Similarity=0.066 Sum_probs=29.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||+|.-|..||..++..+.+|++..+.+
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 58999999999999999999999999998764
No 478
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=78.38 E-value=3.5 Score=32.85 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=29.5
Q ss_pred CEEEEcC-CccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|+|.|+ |..|..++..|.+.+.+|....|.+.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~ 34 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSS 34 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 5899999 99999999999998888999998753
No 479
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.27 E-value=2.6 Score=36.04 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=28.6
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|+|+|..|..++..|.+...+|+++.+.+
T Consensus 233 ~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~ 264 (453)
T PRK09496 233 RVMIVGGGNIGYYLAKLLEKEGYSVKLIERDP 264 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 48999999999999999999888899997654
No 480
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=78.25 E-value=2.4 Score=37.33 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=29.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|.|||+|.-|..+|..++..+.+|++..+.+.
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 589999999999999999999999999987653
No 481
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=78.21 E-value=3.2 Score=33.59 Aligned_cols=32 Identities=13% Similarity=0.325 Sum_probs=27.7
Q ss_pred CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~ 32 (182)
+|+|||+|-.|.-++..|++. +++|+++.|..
T Consensus 127 ~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 127 RGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred eEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 589999999999999999986 46899998863
No 482
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=78.20 E-value=2.7 Score=35.12 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=27.9
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~ 32 (182)
+|+|||+|..|.-+|..|.+.+ ++|+++-|..
T Consensus 176 ~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 176 SLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred EEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 5899999999999999999865 6799888854
No 483
>PRK05442 malate dehydrogenase; Provisional
Probab=78.01 E-value=3.8 Score=34.03 Aligned_cols=32 Identities=9% Similarity=0.141 Sum_probs=26.0
Q ss_pred CEEEEcC-CccHHHHHHHHhc--cCC-----eEEEEeccC
Q 037525 1 VIILVGS-SASAVDICRDLAG--VAK-----EVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~-G~sg~d~A~~l~~--~a~-----~V~l~~r~~ 32 (182)
+|.|||+ |..|..+|..|+. .+. ++.|+...+
T Consensus 6 KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~ 45 (326)
T PRK05442 6 RVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPP 45 (326)
T ss_pred EEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCC
Confidence 5899998 9999999998875 455 788887643
No 484
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=77.92 E-value=1.4 Score=37.40 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=27.4
Q ss_pred CEEEEcCCccHHHHHHHHhcc----------------------CCeEEEEeccCCC
Q 037525 1 VIILVGSSASAVDICRDLAGV----------------------AKEVHLVSRSVAD 34 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~----------------------a~~V~l~~r~~~~ 34 (182)
+|+|||.||.|+|+|..|..- .++|+++.|+.+.
T Consensus 161 ~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~ 216 (468)
T KOG1800|consen 161 KVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPL 216 (468)
T ss_pred eEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCcc
Confidence 589999999999999887641 2468999998764
No 485
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=77.90 E-value=3.5 Score=34.01 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=27.3
Q ss_pred CEEEEcCCccHHHHHHHHhc--cCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAG--VAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~--~a~~V~l~~r~~ 32 (182)
+|+|||+|..|..+|..|+. .+.++.|+.+..
T Consensus 8 ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 8 KVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 58999999999999999985 566899988754
No 486
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=77.71 E-value=3.4 Score=32.75 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=28.2
Q ss_pred CEEEEcC-CccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|+|+ |..|.-++..|.+.+.+|+.+.|+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~ 32 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS 32 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc
Confidence 6899997 999999999999988899988875
No 487
>PRK08017 oxidoreductase; Provisional
Probab=77.70 E-value=3.2 Score=32.20 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=27.9
Q ss_pred CEEEEcC-CccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|.|+ |..|..+|..|++.+.+|.++.|+.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4899998 9999999999998877898888764
No 488
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=77.67 E-value=3.1 Score=34.61 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=30.2
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
+|.|+|+|.=|.-+|.-|++.+.+|.+..|++.
T Consensus 3 kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~ 35 (329)
T COG0240 3 KIAVIGAGSWGTALAKVLARNGHEVRLWGRDEE 35 (329)
T ss_pred eEEEEcCChHHHHHHHHHHhcCCeeEEEecCHH
Confidence 589999999999999999999999999998653
No 489
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.45 E-value=2.8 Score=36.69 Aligned_cols=31 Identities=6% Similarity=0.208 Sum_probs=27.5
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|+|+|.|.||+-.+..|...+.+|+++.++
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5899999999999998888888899998854
No 490
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.41 E-value=3.3 Score=31.92 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=27.8
Q ss_pred CEEEEcC-CccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|+|+|+ |..|.+++..|++.+.+|++..|+.
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4788886 7899999999999888899998875
No 491
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=77.32 E-value=2.1 Score=30.58 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=26.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~ 31 (182)
+|.|||+|+.|.-++..|.+.+..|.-++.+
T Consensus 12 ~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 12 KIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 5889999999999999999988887776543
No 492
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=77.25 E-value=4.5 Score=29.16 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=26.8
Q ss_pred EEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525 2 IILVGSSASAVDICRDLAGVAKEVHLVSRSVA 33 (182)
Q Consensus 2 V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~ 33 (182)
++|+|+|..|..++......+=+|+++..++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999889999987654
No 493
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=77.09 E-value=2.7 Score=38.61 Aligned_cols=32 Identities=13% Similarity=0.031 Sum_probs=28.5
Q ss_pred CEEEEcCCccHHHHHHHHh-ccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLA-GVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~-~~a~~V~l~~r~~ 32 (182)
+|.|||+|..|..||..++ ..+.+|++....+
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 5899999999999999999 7788999988754
No 494
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=77.02 E-value=1.5 Score=37.81 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=23.8
Q ss_pred CEEEEcCCccHHHHHHHHhccCC------eEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVAK------EVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~------~V~l~~r~ 31 (182)
+|+|||+|++|+-.|..|.+.+. +|-++...
T Consensus 78 Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKa 114 (621)
T KOG2415|consen 78 DVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKA 114 (621)
T ss_pred cEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeec
Confidence 58999999999999999887543 35555543
No 495
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=76.92 E-value=3.6 Score=34.57 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=25.6
Q ss_pred EEEEcCCccHHHHHHHHhccCC--eEEEEeccC
Q 037525 2 IILVGSSASAVDICRDLAGVAK--EVHLVSRSV 32 (182)
Q Consensus 2 V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~ 32 (182)
|+|+|+|..|.-++..|++... +|++..|+.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~ 33 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP 33 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH
Confidence 7999999999999999999765 789988864
No 496
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=76.90 E-value=3.7 Score=33.83 Aligned_cols=31 Identities=19% Similarity=0.484 Sum_probs=26.6
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS 31 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~ 31 (182)
+|+|||+|-.|.++|..|+..+ .+++++...
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 6999999999999999999954 578887654
No 497
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=76.85 E-value=2.7 Score=34.23 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=27.0
Q ss_pred CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~ 32 (182)
+|+|||.|..|.-+|..|.+.+ .+|+++.|++
T Consensus 8 ~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 8 RVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred EEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 5899999999999999998865 4788887754
No 498
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=76.68 E-value=6.6 Score=33.39 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=27.6
Q ss_pred EcceeEEeeC-CCeEEEcC---CcEEe--cCEEEEecccccCCCCCC
Q 037525 48 LHSMIESAHD-NGAVVFRN---GHTVH--ADVILHCTGYKYHFPFLE 88 (182)
Q Consensus 48 ~~~~v~~~~~-~~~v~~~d---g~~~~--~D~vi~atG~~~~~~~l~ 88 (182)
....|++++. ++.+.+.+ ++.+. +|.+|+|||.++..+-++
T Consensus 63 ~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~ 109 (427)
T TIGR03385 63 TNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIE 109 (427)
T ss_pred ecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCC
Confidence 3456677753 34666653 34666 999999999988755444
No 499
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=76.67 E-value=3.8 Score=33.44 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=27.2
Q ss_pred CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~ 32 (182)
+|+|||.|-.|.|+|..|+..+ ++++++....
T Consensus 21 ~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 21 NVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred cEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 6999999999999999999854 5788887643
No 500
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=76.59 E-value=3.1 Score=33.81 Aligned_cols=32 Identities=9% Similarity=0.221 Sum_probs=28.7
Q ss_pred CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525 1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV 32 (182)
Q Consensus 1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~ 32 (182)
+|.|||.|+-|.-+|..|++.+.+|++..|++
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 58999999999999999999888898887754
Done!