BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037526
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XXQ|A Chain A, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra
pdb|1XXQ|B Chain B, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra
pdb|1XXQ|C Chain C, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra
pdb|1XXQ|D Chain D, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra
pdb|1XXR|A Chain A, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra In Complex With Mannose
pdb|1XXR|B Chain B, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra In Complex With Mannose
pdb|1XXR|C Chain C, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra In Complex With Mannose
pdb|1XXR|D Chain D, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra In Complex With Mannose
Length = 161
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 100/154 (64%), Gaps = 12/154 (7%)
Query: 14 IVIGPWGGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGNRT 73
I +G WGG GG +WDDG Y G+REI L++ I + V+YD G P T H G
Sbjct: 17 IEVGLWGGPGGNAWDDGSYTGIREINLSHGDAIGAFSVIYDLNGQPFTGPTHPG------ 70
Query: 74 AEICSIPTLLSFPIKLRFPEEFLISVSGH--YCPVVYGGSPVIRSLTFKSNKRTFGPFGV 131
+ P+ + I L FP EFL+SVSG+ + G VIRSLTFK+NK+T+GP+G
Sbjct: 71 ----NEPSFKTVKITLDFPNEFLVSVSGYTGVLARLATGKDVIRSLTFKTNKKTYGPYGK 126
Query: 132 EEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLS 165
EEGTPF+ ++ GL+VGFKGRSG+ VDAIGF+LS
Sbjct: 127 EEGTPFSLPIENGLIVGFKGRSGFVVDAIGFHLS 160
>pdb|3P8S|A Chain A, Crystal Structure Of Single Chain Recombinant Jacalin
Showing Highly Dynamic Posttranslational Excission Loop
That Reduces Binding Affinity
pdb|3P8S|B Chain B, Crystal Structure Of Single Chain Recombinant Jacalin
Showing Highly Dynamic Posttranslational Excission Loop
That Reduces Binding Affinity
Length = 157
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 97/167 (58%), Gaps = 19/167 (11%)
Query: 6 HASGQKKSIVIGPWGG-----NGGTSWDDGIYHGVREITLAYDR--CIDSIRVVYDKKGN 58
SG +++++GPWG + G ++DDG + G+REI L+Y++ I ++VVYD G+
Sbjct: 2 EQSGISQTVIVGPWGAKVSTSSNGKAFDDGAFTGIREINLSYNKETAIGDLQVVYDLNGS 61
Query: 59 PVTAEKHGGVGGNRTAEICSIPTLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLT 118
P + H I I L FP E+++ VSG+ V G V+RSLT
Sbjct: 62 PYVGQNHKSF----------ITGFTPVKISLDFPSEYIMEVSGYTGNV--SGYVVVRSLT 109
Query: 119 FKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLS 165
FK+NK+T+GP+GV GTPF ++ GL+VGFKG G+++D YLS
Sbjct: 110 FKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDCFSMYLS 156
>pdb|1J4S|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|B Chain B, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|C Chain C, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|D Chain D, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
Length = 149
Score = 119 bits (299), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 90/144 (62%), Gaps = 14/144 (9%)
Query: 25 TSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPTLLS 84
WD+G Y G+R+I L+Y I S V+YD G+P + KH + +
Sbjct: 16 NGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVK--------- 66
Query: 85 FPIKLRFPEEFLISVSGHYCP--VVYGGSPVIRSLTFKSNK-RTFGPFGVEEGTPFTFSM 141
I+L+FP+EFL SVSG+ P + +PV+RSLTFK+NK RTFGP+G EEGT F +
Sbjct: 67 --IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPI 124
Query: 142 DGGLVVGFKGRSGWYVDAIGFYLS 165
+ GL+VGFKGR+G +DAIG ++S
Sbjct: 125 ENGLIVGFKGRTGDLLDAIGIHMS 148
>pdb|1J4T|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|B Chain B, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|C Chain C, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|D Chain D, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|E Chain E, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|F Chain F, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|G Chain G, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|H Chain H, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4U|A Chain A, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|B Chain B, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|C Chain C, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|D Chain D, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
Length = 149
Score = 119 bits (299), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 90/144 (62%), Gaps = 14/144 (9%)
Query: 25 TSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPTLLS 84
WD+G Y G+R+I L+Y I S V+YD G+P + KH + +
Sbjct: 16 NGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVK--------- 66
Query: 85 FPIKLRFPEEFLISVSGHYCP--VVYGGSPVIRSLTFKSNK-RTFGPFGVEEGTPFTFSM 141
I+L+FP+EFL SVSG+ P + +PV+RSLTFK+NK RTFGP+G EEGT F +
Sbjct: 67 --IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPI 124
Query: 142 DGGLVVGFKGRSGWYVDAIGFYLS 165
+ GL+VGFKGR+G +DAIG ++S
Sbjct: 125 ENGLIVGFKGRTGDLLDAIGIHMS 148
>pdb|1VBP|A Chain A, Crystal Structure Of Artocarpin-Mannopentose Complex
pdb|1VBP|B Chain B, Crystal Structure Of Artocarpin-Mannopentose Complex
Length = 149
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 86/137 (62%), Gaps = 14/137 (10%)
Query: 32 YHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPTLLSFPIKLRF 91
Y G+R+I L+Y I S V+YD G+P + KH + + I+L+F
Sbjct: 23 YTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVK-----------IELKF 71
Query: 92 PEEFLISVSGHYCP--VVYGGSPVIRSLTFKSNK-RTFGPFGVEEGTPFTFSMDGGLVVG 148
P+EFL SVSG+ P + +PV+RSLTFK+NK RTFGP+G EEGT F ++ GL+VG
Sbjct: 72 PDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVG 131
Query: 149 FKGRSGWYVDAIGFYLS 165
FKGR+G +DAIG ++S
Sbjct: 132 FKGRTGDLLDAIGIHMS 148
>pdb|1VBO|A Chain A, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|B Chain B, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|C Chain C, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|D Chain D, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|E Chain E, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|F Chain F, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|G Chain G, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|H Chain H, Crystal Structure Of Artocarpin-Mannotriose Complex
Length = 149
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 86/137 (62%), Gaps = 14/137 (10%)
Query: 32 YHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPTLLSFPIKLRF 91
Y G+R+I L+Y I S V+YD G+P + KH + + I+L+F
Sbjct: 23 YTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVK-----------IELKF 71
Query: 92 PEEFLISVSGHYCP--VVYGGSPVIRSLTFKSNK-RTFGPFGVEEGTPFTFSMDGGLVVG 148
P+EFL SVSG+ P + +PV+RSLTFK+NK RTFGP+G EEGT F ++ GL+VG
Sbjct: 72 PDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVG 131
Query: 149 FKGRSGWYVDAIGFYLS 165
FKGR+G +DAIG ++S
Sbjct: 132 FKGRTGDLLDAIGIHMS 148
>pdb|4AK4|A Chain A, High Resolution Structure Of Galactose Binding Lectin From
Champedak (cgb)
pdb|4AK4|C Chain C, High Resolution Structure Of Galactose Binding Lectin From
Champedak (cgb)
pdb|4AK4|E Chain E, High Resolution Structure Of Galactose Binding Lectin From
Champedak (cgb)
pdb|4AK4|G Chain G, High Resolution Structure Of Galactose Binding Lectin From
Champedak (cgb)
pdb|4AK4|I Chain I, High Resolution Structure Of Galactose Binding Lectin From
Champedak (cgb)
pdb|4AK4|K Chain K, High Resolution Structure Of Galactose Binding Lectin From
Champedak (cgb)
pdb|4AK4|M Chain M, High Resolution Structure Of Galactose Binding Lectin From
Champedak (cgb)
pdb|4AK4|O Chain O, High Resolution Structure Of Galactose Binding Lectin From
Champedak (cgb)
Length = 133
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 86/144 (59%), Gaps = 14/144 (9%)
Query: 24 GTSWDDGIYHGVREITLAYDR--CIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPT 81
G ++DDG++ G+REI L+Y++ I +VVYD G+P E H I
Sbjct: 1 GKAFDDGVFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGENHKSF----------ITG 50
Query: 82 LLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSM 141
I L FP E+++ VSG+ V G V+RSLTFK+NK+T+GP+GV GTPF+ +
Sbjct: 51 FTPVKISLDFPSEYIMEVSGYTGKV--SGYVVVRSLTFKTNKKTYGPYGVTSGTPFSLPI 108
Query: 142 DGGLVVGFKGRSGWYVDAIGFYLS 165
+ GL+VGFKG G+++D YLS
Sbjct: 109 ENGLIVGFKGSIGYWLDYFSMYLS 132
>pdb|1JOT|A Chain A, Structure Of The Lectin Mpa Complexed With T-Antigen
Disaccharide
pdb|3LLY|A Chain A, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
pdb|3LLZ|A Chain A, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With Gal-Beta-1,3-Galnac
pdb|3LM1|A Chain A, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|C Chain C, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|E Chain E, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|G Chain G, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|I Chain I, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|K Chain K, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|M Chain M, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|O Chain O, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
Length = 133
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 82/144 (56%), Gaps = 14/144 (9%)
Query: 24 GTSWDDGIYHGVREITLAYDR--CIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPT 81
G ++DDG Y G+REI Y+ I +RV YD G P AE H I
Sbjct: 1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSF----------ITG 50
Query: 82 LLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSM 141
I L FP E+++ VSG+ V G VIRSLTFK+NK+T+GP+GV GTPF+ +
Sbjct: 51 FKPVKISLEFPSEYIVEVSGYVGKV--EGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPI 108
Query: 142 DGGLVVGFKGRSGWYVDAIGFYLS 165
+ GL+VGFKG G+++D YLS
Sbjct: 109 ENGLIVGFKGSIGYWLDYFSIYLS 132
>pdb|1UGW|A Chain A, Crystal Structure Of Jacalin- Gal Complex
pdb|1UGW|G Chain G, Crystal Structure Of Jacalin- Gal Complex
pdb|1UGX|A Chain A, Crystal Structure Of Jacalin- Me-Alpha-T-Antigen
(Gal-Beta(1-3)- Galnac-Alpha-O-Me) Complex
pdb|1UGY|A Chain A, Crystal Structure Of Jacalin- Mellibiose (Gal-Alpha(1-6)-
Glc) Complex
pdb|1UGY|G Chain G, Crystal Structure Of Jacalin- Mellibiose (Gal-Alpha(1-6)-
Glc) Complex
pdb|1WS4|A Chain A, Crystal Structure Of Jacalin- Me-alpha-mannose Complex:
Promiscuity Vs Specificity
pdb|1WS4|G Chain G, Crystal Structure Of Jacalin- Me-alpha-mannose Complex:
Promiscuity Vs Specificity
pdb|1WS5|A Chain A, Crystal Structure Of Jacalin-Me-Alpha-Mannose Complex:
Promiscuity Vs Specificity
pdb|1WS5|G Chain G, Crystal Structure Of Jacalin-Me-Alpha-Mannose Complex:
Promiscuity Vs Specificity
Length = 133
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 85/144 (59%), Gaps = 14/144 (9%)
Query: 24 GTSWDDGIYHGVREITLAYDR--CIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPT 81
G ++DDG + G+REI L+Y++ I +VVYD G+P + H + I
Sbjct: 1 GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNH----------VSFITG 50
Query: 82 LLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSM 141
I L FP E+++ VSG+ V G V+RSLTFK+NK+T+GP+GV GTPF +
Sbjct: 51 FTPVKISLDFPSEYIMEVSGYTGNV--SGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPI 108
Query: 142 DGGLVVGFKGRSGWYVDAIGFYLS 165
+ GL+VGFKG G+++D YLS
Sbjct: 109 ENGLIVGFKGSIGYWLDYFSMYLS 132
>pdb|4AKB|A Chain A, Structure Of Galactose Binding Lectin From Champedak (cgb)
With Galactose
pdb|4AKB|C Chain C, Structure Of Galactose Binding Lectin From Champedak (cgb)
With Galactose
pdb|4AKB|E Chain E, Structure Of Galactose Binding Lectin From Champedak (cgb)
With Galactose
pdb|4AKB|G Chain G, Structure Of Galactose Binding Lectin From Champedak (cgb)
With Galactose
pdb|4AKC|A Chain A, Structure Of Galactose Binding Lectin From Champedak (cgb)
With Gal(beta)1,3-galnac
pdb|4AKC|C Chain C, Structure Of Galactose Binding Lectin From Champedak (cgb)
With Gal(beta)1,3-galnac
pdb|4AKC|E Chain E, Structure Of Galactose Binding Lectin From Champedak (cgb)
With Gal(beta)1,3-galnac
pdb|4AKC|G Chain G, Structure Of Galactose Binding Lectin From Champedak (cgb)
With Gal(beta)1,3-galnac
Length = 133
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 85/144 (59%), Gaps = 14/144 (9%)
Query: 24 GTSWDDGIYHGVREITLAYDR--CIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPT 81
G ++DDG + G+REI L+Y++ I +VVYD G+P E H I
Sbjct: 1 GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGENHKSF----------ITG 50
Query: 82 LLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSM 141
I L FP E+++ VSG+ V G V+RSLTFK+NK+T+GP+GV GTPF+ +
Sbjct: 51 FTPVKISLDFPSEYIMEVSGYTGKV--SGYVVVRSLTFKTNKKTYGPYGVTSGTPFSLPI 108
Query: 142 DGGLVVGFKGRSGWYVDAIGFYLS 165
+ GL+VGFKG G+++D YLS
Sbjct: 109 ENGLIVGFKGSIGYWLDYFSMYLS 132
>pdb|1JAC|A Chain A, A Novel Mode Of Carbohydrate Recognition In Jacalin, A
Moraceae Plant Lectin With A Beta-Prism
pdb|1JAC|C Chain C, A Novel Mode Of Carbohydrate Recognition In Jacalin, A
Moraceae Plant Lectin With A Beta-Prism
pdb|1JAC|E Chain E, A Novel Mode Of Carbohydrate Recognition In Jacalin, A
Moraceae Plant Lectin With A Beta-Prism
pdb|1JAC|G Chain G, A Novel Mode Of Carbohydrate Recognition In Jacalin, A
Moraceae Plant Lectin With A Beta-Prism
pdb|1KU8|A Chain A, Crystal Structure Of Jacalin
pdb|1KU8|C Chain C, Crystal Structure Of Jacalin
pdb|1KU8|E Chain E, Crystal Structure Of Jacalin
pdb|1KU8|G Chain G, Crystal Structure Of Jacalin
pdb|1KUJ|A Chain A, Crystal Structure Of Jacalin Complexed With 1-o-methyl-
Alpha-d-mannose
pdb|1KUJ|C Chain C, Crystal Structure Of Jacalin Complexed With 1-o-methyl-
Alpha-d-mannose
pdb|1KUJ|E Chain E, Crystal Structure Of Jacalin Complexed With 1-o-methyl-
Alpha-d-mannose
pdb|1KUJ|G Chain G, Crystal Structure Of Jacalin Complexed With 1-o-methyl-
Alpha-d-mannose
pdb|1M26|A Chain A, Crystal Structure Of Jacalin-T-Antigen Complex
pdb|1M26|C Chain C, Crystal Structure Of Jacalin-T-Antigen Complex
pdb|1M26|E Chain E, Crystal Structure Of Jacalin-T-Antigen Complex
pdb|1M26|G Chain G, Crystal Structure Of Jacalin-T-Antigen Complex
pdb|1UGW|C Chain C, Crystal Structure Of Jacalin- Gal Complex
pdb|1UGW|E Chain E, Crystal Structure Of Jacalin- Gal Complex
pdb|1UGY|C Chain C, Crystal Structure Of Jacalin- Mellibiose (Gal-Alpha(1-6)-
Glc) Complex
pdb|1UGY|E Chain E, Crystal Structure Of Jacalin- Mellibiose (Gal-Alpha(1-6)-
Glc) Complex
pdb|1UH0|A Chain A, Crystal Structure Of Jacalin- Me-Alpha-Galnac Complex
pdb|1UH0|C Chain C, Crystal Structure Of Jacalin- Me-Alpha-Galnac Complex
pdb|1UH0|E Chain E, Crystal Structure Of Jacalin- Me-Alpha-Galnac Complex
pdb|1UH0|G Chain G, Crystal Structure Of Jacalin- Me-Alpha-Galnac Complex
pdb|1UH1|A Chain A, Crystal Structure Of Jacalin-
Galnac-Beta(1-3)-Gal-Alpha-O-Me Complex
pdb|1UH1|C Chain C, Crystal Structure Of Jacalin-
Galnac-Beta(1-3)-Gal-Alpha-O-Me Complex
pdb|1UH1|E Chain E, Crystal Structure Of Jacalin-
Galnac-Beta(1-3)-Gal-Alpha-O-Me Complex
pdb|1UH1|G Chain G, Crystal Structure Of Jacalin-
Galnac-Beta(1-3)-Gal-Alpha-O-Me Complex
pdb|1PXD|A Chain A, Crystal Structure Of The Complex Of Jacalin With Meso-
Tetrasulphonatophenylporphyrin.
pdb|1WS4|C Chain C, Crystal Structure Of Jacalin- Me-alpha-mannose Complex:
Promiscuity Vs Specificity
pdb|1WS4|E Chain E, Crystal Structure Of Jacalin- Me-alpha-mannose Complex:
Promiscuity Vs Specificity
pdb|1WS5|C Chain C, Crystal Structure Of Jacalin-Me-Alpha-Mannose Complex:
Promiscuity Vs Specificity
pdb|1WS5|E Chain E, Crystal Structure Of Jacalin-Me-Alpha-Mannose Complex:
Promiscuity Vs Specificity
Length = 133
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 84/144 (58%), Gaps = 14/144 (9%)
Query: 24 GTSWDDGIYHGVREITLAYDR--CIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPT 81
G ++DDG + G+REI L+Y++ I +VVYD G+P + H I
Sbjct: 1 GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSF----------ITG 50
Query: 82 LLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSM 141
I L FP E+++ VSG+ V G V+RSLTFK+NK+T+GP+GV GTPF +
Sbjct: 51 FTPVKISLDFPSEYIMEVSGYTGNV--SGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPI 108
Query: 142 DGGLVVGFKGRSGWYVDAIGFYLS 165
+ GL+VGFKG G+++D YLS
Sbjct: 109 ENGLIVGFKGSIGYWLDYFSMYLS 132
>pdb|1TOQ|A Chain A, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-a-d-galactose
pdb|1TOQ|C Chain C, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-a-d-galactose
pdb|1TOQ|E Chain E, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-a-d-galactose
pdb|1TOQ|G Chain G, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-a-d-galactose
pdb|1TP8|A Chain A, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-A-D-Galactose
pdb|1TP8|C Chain C, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-A-D-Galactose
pdb|1TP8|E Chain E, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-A-D-Galactose
pdb|1TP8|G Chain G, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-A-D-Galactose
Length = 133
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 83/144 (57%), Gaps = 14/144 (9%)
Query: 24 GTSWDDGIYHGVREITLAYDR--CIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPT 81
G ++DDG + G+REI L+Y++ I +VVYD G+P + H I
Sbjct: 1 GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHSSF----------ISG 50
Query: 82 LLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSM 141
I L FP E++ VSG+ V G V+RSLTFK+NK+T+GP+GV GTPF +
Sbjct: 51 FTPVKISLDFPSEYITEVSGYTGNV--SGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPI 108
Query: 142 DGGLVVGFKGRSGWYVDAIGFYLS 165
+ GL+VGFKG G+++D YLS
Sbjct: 109 ENGLIVGFKGSIGYWMDYFSMYLS 132
>pdb|4AKD|A Chain A, High Resolution Structure Of Mannose Binding Lectin From
Champedak (cmb)
pdb|4AKD|B Chain B, High Resolution Structure Of Mannose Binding Lectin From
Champedak (cmb)
pdb|4AKD|C Chain C, High Resolution Structure Of Mannose Binding Lectin From
Champedak (cmb)
pdb|4AKD|D Chain D, High Resolution Structure Of Mannose Binding Lectin From
Champedak (cmb)
Length = 150
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 84/137 (61%), Gaps = 14/137 (10%)
Query: 32 YHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPTLLSFPIKLRF 91
Y G+R+I L+Y I S V+YD G KH + + I+L+F
Sbjct: 24 YTGIRQIELSYKEAIGSFCVIYDLNGESFPGPKHTSKLPYKNVK-----------IELQF 72
Query: 92 PEEFLISVSGHYCP--VVYGGSPVIRSLTFKSNK-RTFGPFGVEEGTPFTFSMDGGLVVG 148
PEEFL+SVSG+ P + +PV+RSLTFK+NK RTFGP+G EEGT F ++ GL+VG
Sbjct: 73 PEEFLVSVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVG 132
Query: 149 FKGRSGWYVDAIGFYLS 165
FKGR+G +DAIG +++
Sbjct: 133 FKGRTGDLLDAIGVHMA 149
>pdb|2JZ4|A Chain A, Putative 32 Kda Myrosinase Binding Protein At3g16450.1
From Arabidopsis Thaliana
Length = 299
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 14/147 (9%)
Query: 20 GGNGGTSWDDGIYHGVREITLAYDRC-IDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICS 78
GG+ GT+WDDG Y GV+++ + + I +++ Y+K + +HG
Sbjct: 160 GGDEGTAWDDGAYDGVKKVYVGQGQDGISAVKFEYNKGAENIVGGEHGK----------- 208
Query: 79 IPTLLSFP-IKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPF 137
PTLL F ++ +P E++ +V G Y + +I L FK+NK+T PFG+E GT F
Sbjct: 209 -PTLLGFEEFEIDYPSEYITAVEGTYDKIFGSDGLIITMLRFKTNKQTSAPFGLEAGTAF 267
Query: 138 TFSMDGGLVVGFKGRSGWYVDAIGFYL 164
+G +VGF G++ + G ++
Sbjct: 268 ELKEEGHKIVGFHGKASELLHQFGVHV 294
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 26 SWDDGIYHGVREITLAYDRC-IDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPTLLS 84
SWDDG++ GVR++ + + + SI VVY K V +HG TLL
Sbjct: 14 SWDDGVHDGVRKVHVGQGQDGVSSINVVYAKDSQDVEGGEHGK------------KTLLG 61
Query: 85 FPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNK-RTFGPFGVEEGTPFTF-SMD 142
F ++++++V Y V S +I S+TF + K +T P+G+E F +
Sbjct: 62 FETFEVDADDYIVAVQVTYDNVFGQDSDIITSITFNTFKGKTSPPYGLETQKKFVLKDKN 121
Query: 143 GGLVVGFKGRSGWYVDAIGFYL 164
GG +VGF GR+G + A+G Y
Sbjct: 122 GGKLVGFHGRAGEALYALGAYF 143
>pdb|1ZGR|A Chain A, Crystal Structure Of The Parkia Platycephala Seed Lectin
pdb|1ZGR|B Chain B, Crystal Structure Of The Parkia Platycephala Seed Lectin
pdb|1ZGS|A Chain A, Parkia Platycephala Seed Lectin In Complex With 5-Bromo-4-
Chloro-3-Indolyl-A-D-Mannose
pdb|1ZGS|B Chain B, Parkia Platycephala Seed Lectin In Complex With 5-Bromo-4-
Chloro-3-Indolyl-A-D-Mannose
Length = 447
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 78/155 (50%), Gaps = 12/155 (7%)
Query: 11 KKSIVIGPWGGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGG 70
K I +GPWGG+GG W H + EI + I SI + + G GG
Sbjct: 3 KGMISVGPWGGSGGNYWSFKANHAITEIVIHVKDNIKSISF------KDASGDISGTFGG 56
Query: 71 NRTAEICSIPTLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFG 130
E IK+ +P E+L S+SG Y Y G VIRSL+F +N T+GPFG
Sbjct: 57 KDPRENEKGDEK---KIKIHWPTEYLKSISGSYGD--YNGVLVIRSLSFITNLTTYGPFG 111
Query: 131 VEE-GTPFTFSMDGGLVVGFKGRSGWYVDAIGFYL 164
G F+ + +VVGF GR+G+Y+DA+G ++
Sbjct: 112 STSGGESFSIPIADSVVVGFHGRAGYYLDALGIFV 146
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 12/153 (7%)
Query: 13 SIVIGPWGGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGNR 72
SI IGPWGG+GG W G+ +I + I S+ K + + + GGV
Sbjct: 300 SISIGPWGGSGGDPWSYTANEGINQIIIYAGSNIKSVAF---KDTSGLDSATFGGVNPKD 356
Query: 73 TAEICSIPTLLSFPIKLRFPEEFLISVSGHYCPVVYGGS-PVIRSLTFKSNKRTFGPFGV 131
T E ++ + +P E+L S+SG Y + I SL+F +N T+GPFG
Sbjct: 357 TGEKNTV--------SINWPSEYLTSISGTYGQYKFKDVFTTITSLSFTTNLATYGPFGK 408
Query: 132 EEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYL 164
T F+ + +VVGF GR+G Y+DAIG ++
Sbjct: 409 ASATSFSIPIHNNMVVGFHGRAGDYLDAIGIFV 441
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 14/157 (8%)
Query: 13 SIVIGPWGGNGGT-SWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGN 71
+I GPWGG G +++ + +++I + D I+SI K N +G GG
Sbjct: 153 TISFGPWGGPAGDDAFNFKVGSWIKDIIIYADAAINSIAF---KDAN---GHCYGKFGGQ 206
Query: 72 RTAEICSIPTLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGV 131
+I + +++ E L S+SG Y Y G V+ SL+F +N GPFG+
Sbjct: 207 DPNDIG-----VEKKVEIDGNLEHLKSISGTYGN--YKGFEVVTSLSFITNVTKHGPFGI 259
Query: 132 EEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQ 168
GT F+ ++G LV GF G+SG+Y+D+IG Y+ +
Sbjct: 260 ASGTSFSIPIEGSLVTGFHGKSGYYLDSIGIYVKPRD 296
>pdb|3R50|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|C Chain C, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|D Chain D, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|E Chain E, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R51|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R51|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|C Chain C, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|D Chain D, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|C Chain C, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|D Chain D, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
Length = 160
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 78/156 (50%), Gaps = 20/156 (12%)
Query: 17 GPWGGNGGTSWDDGIYHGVREITLAY----DRCIDSIRVVYDKKGNPVTAEKHGGVGGNR 72
GP G NGG W + +I L++ D+ ++ I + + NP GGVG
Sbjct: 20 GPVGSNGGQFWSFRPVRPLNKIVLSFSGSPDQTLNLISITFSS--NPTDIITVGGVG--- 74
Query: 73 TAEICSIPTLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVE 132
P L++ + + +I +SG Y G VIRS+ F +NK+ +GP+G
Sbjct: 75 -------PEPLTYTETVNIDGD-IIEISGMIAN--YKGYNVIRSIKFTTNKKEYGPYGAN 124
Query: 133 EGTPFTFSM-DGGLVVGFKGRSGWYVDAIGFYLSKK 167
GTPF + DG +VGF G SGWYVDAIG Y + K
Sbjct: 125 AGTPFNIKIPDGNKIVGFFGNSGWYVDAIGAYYTAK 160
>pdb|2BMY|A Chain A, Banana Lectin
pdb|2BMY|B Chain B, Banana Lectin
pdb|2BMZ|A Chain A, Banana Lectin Bound To Xyl-B1,3 Man-A-O-Methyl (Xm)
pdb|2BMZ|B Chain B, Banana Lectin Bound To Xyl-B1,3 Man-A-O-Methyl (Xm)
pdb|2BN0|A Chain A, Banana Lectin Bound To Laminaribiose
pdb|2BN0|B Chain B, Banana Lectin Bound To Laminaribiose
Length = 141
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 18/153 (11%)
Query: 13 SIVIGPWGGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGNR 72
+I +G WGGNGG+++D G + + + + +D + V + G T +GG GG
Sbjct: 4 AIKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDGVDVTFTYYGKTET-RHYGGSGGT- 61
Query: 73 TAEICSIPTLLSFPIKLRFPE-EFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGV 131
P ++ E E+L+ ++G Y G+ V+ L F +NK+ +GPFG
Sbjct: 62 -------------PHEIVLQEGEYLVGMAGEVAN--YHGAVVLGKLGFSTNKKAYGPFGN 106
Query: 132 EEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYL 164
GTPF+ + G + GF GR G ++DAIG YL
Sbjct: 107 TGGTPFSLPIAAGKISGFFGRGGKFLDAIGVYL 139
>pdb|1X1V|A Chain A, Structure Of Banana Lectin- Methyl-Alpha-Mannose Complex
pdb|1X1V|B Chain B, Structure Of Banana Lectin- Methyl-Alpha-Mannose Complex
pdb|3MIT|A Chain A, Structure Of Banana Lectin-Alpha-D-Mannose Complex
pdb|3MIT|B Chain B, Structure Of Banana Lectin-Alpha-D-Mannose Complex
pdb|3MIU|A Chain A, Structure Of Banana Lectin-Pentamannose Complex
pdb|3MIU|B Chain B, Structure Of Banana Lectin-Pentamannose Complex
pdb|3MIV|A Chain A, Structure Of Banana Lectin - Glc-Alpha(1,2)-Glc Complex
pdb|3MIV|B Chain B, Structure Of Banana Lectin - Glc-Alpha(1,2)-Glc Complex
Length = 141
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 20/154 (12%)
Query: 13 SIVIGPWGGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKH-GGVGGN 71
+I +G WGGNGG+++D G + + + + +D++ V + G T +H GG GG
Sbjct: 4 AIKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDAVDVTFTYYGK--TETRHFGGSGGT 61
Query: 72 RTAEICSIPTLLSFPIKLRFPE-EFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFG 130
P ++ E E+L+ + G + Y G V+ L F +NK+++GPFG
Sbjct: 62 --------------PHEIVLQEGEYLVGMKGEFGN--YHGVVVVGKLGFSTNKKSYGPFG 105
Query: 131 VEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYL 164
GTPF+ + G + GF GR G ++DAIG YL
Sbjct: 106 NTGGTPFSLPIAAGKISGFFGRGGDFIDAIGVYL 139
>pdb|1C3K|A Chain A, Crystal Structure Of Helianthus Tuberosus Lectin
pdb|1C3M|A Chain A, Crystal Structure Of Heltuba Complexed To Man(1-3)man
pdb|1C3N|A Chain A, Crystal Structure Of Helianthus Tuberosus Lectin Complexed
To Man(1- 2)man
Length = 147
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 13 SIVIGPWGGNGGTSWDDGIYHG-VREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGN 71
++ GPWGGNGG W + G + I + CI SI+ VY K N GV G+
Sbjct: 7 AVQAGPWGGNGGKRWLQTAHGGKITSIIIKGGTCIFSIQFVYKDKDNIEYHSGKFGVLGD 66
Query: 72 RTAEICSIPTLLSFPIKLRFPE-EFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFG 130
+ I F E E + ++SG + Y V+ SLTF++NK+ +GPFG
Sbjct: 67 KAETIT-------------FAEDEDITAISGTFGA--YYHMTVVTSLTFQTNKKVYGPFG 111
Query: 131 VEEGTPFTFSMDGGLVVGFKGRSGWYVDAIG 161
+ F+ + G GF G SG +D+IG
Sbjct: 112 TVASSSFSLPLTKGKFAGFFGNSGDVLDSIG 142
>pdb|1OUW|A Chain A, Crystal Structure Of Calystegia Sepium Agglutinin
pdb|1OUW|B Chain B, Crystal Structure Of Calystegia Sepium Agglutinin
pdb|1OUW|C Chain C, Crystal Structure Of Calystegia Sepium Agglutinin
pdb|1OUW|D Chain D, Crystal Structure Of Calystegia Sepium Agglutinin
Length = 152
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 19/159 (11%)
Query: 15 VIGPWGGNGGTSWDDGIYHGVREITLAY----DRCIDSIRVVYDKKGNPVTAEKHGGVGG 70
+ GPWG NGG W + + +I ++Y + I G+ T GG
Sbjct: 7 ISGPWGNNGGNFWSFRPVNKINQIVISYGGGGNNPIALTFSSTKADGSKDTITVGGGGPD 66
Query: 71 NRT-AEICSIPTLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPF 129
+ T E+ +I T +E+L +SG + +Y + V+RS+TF +N + GP+
Sbjct: 67 SITGTEMVNIGT-----------DEYLTGISGTFG--IYLDNNVLRSITFTTNLKAHGPY 113
Query: 130 GVEEGTPF-TFSMDGGLVVGFKGRSGWYVDAIGFYLSKK 167
G + GTPF + ++ G +VGF GRSG+YVDAIG Y K
Sbjct: 114 GQKVGTPFSSANVVGNEIVGFLGRSGYYVDAIGTYNRHK 152
>pdb|3APA|A Chain A, Crystal Structure Of Human Pancreatic Secretory Protein
Zg16p
Length = 141
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 92 PEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFT-FSMDGGLVVGF- 149
P E +I VSG Y ++ L F ++K + FG + GT F + V+ F
Sbjct: 72 PGESVIQVSGKY-------KWYLKKLVFVTDKGRYLSFGKDSGTSFNAVPLHPNTVLRFI 124
Query: 150 KGRSGWYVDAIGFY 163
GRSG +DAIG +
Sbjct: 125 SGRSGSLIDAIGLH 138
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 9 GQKKSIVIGPWGGNGG-TSWDDGIYHGVREIT------LAYDRCIDSIRVVY 53
G+ +++ P GN G D G G+REIT L +D I R+ Y
Sbjct: 198 GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAY 249
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 9 GQKKSIVIGPWGGNGG-TSWDDGIYHGVREIT------LAYDRCIDSIRVVY 53
G+ +++ P GN G D G G+REIT L +D I R+ Y
Sbjct: 198 GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAY 249
>pdb|4FR5|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s
Mutant From Helicobacter Pylori In Complex With
Shikimate
pdb|4FR5|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 82 LLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRS-----------LTFKSNKRTFGPFG 130
L+F +LRF GHY P++ I+S +T +R F
Sbjct: 26 FLTFQKELRF--------LGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVCD 77
Query: 131 VEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQSS 170
+G LV+ G+ DA+GFYLS KQ +
Sbjct: 78 KIKGIALECGAVNTLVLENDELVGYNTDALGFYLSLKQKN 117
>pdb|4FQ8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a
Mutant From Helicobacter Pylori In Complex With
Shikimate
pdb|4FQ8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 82 LLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRS-----------LTFKSNKRTFGPFG 130
L+F +LRF GHY P++ I+S +T +R F
Sbjct: 26 FLTFQKELRF--------LGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVCD 77
Query: 131 VEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQSS 170
+G LV+ G+ DA+GFYLS KQ +
Sbjct: 78 KIKGIALECGAVNTLVLENDELVGYNTDALGFYLSLKQKN 117
>pdb|4FPX|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n
Mutant From Helicobacter Pylori
pdb|4FPX|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n
Mutant From Helicobacter Pylori
Length = 271
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 82 LLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRS-----------LTFKSNKRTFGPFG 130
L+F +LRF GHY P++ I+S +T +R F
Sbjct: 26 FLTFQKELRF--------LGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVCD 77
Query: 131 VEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQSS 170
+G LV+ G+ DA+GFYLS KQ +
Sbjct: 78 KIKGIALECGAVNTLVLENDELVGYNTDALGFYLSLKQKN 117
>pdb|4FOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k
Mutant From Helicobacter Pylori
pdb|4FOO|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k
Mutant From Helicobacter Pylori
Length = 271
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 19/101 (18%)
Query: 81 TLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRS-----------LTFKSNKRTFGPF 129
L+F +LRF GHY P++ I+S +T +R F
Sbjct: 25 CFLTFQKELRF--------LGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVC 76
Query: 130 GVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQSS 170
+G LV+ G+ DA+GFYLS KQ +
Sbjct: 77 DKIKGIALECGAVNTLVLENDELVGYNTDALGFYLSLKQKN 117
>pdb|4FOS|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237a
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 19/101 (18%)
Query: 81 TLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRS-----------LTFKSNKRTFGPF 129
L+F +LRF GHY P++ I+S +T +R F
Sbjct: 25 CFLTFQKELRF--------LGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVC 76
Query: 130 GVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQSS 170
+G LV+ G+ DA+GFYLS KQ +
Sbjct: 77 DKIKGIALECGAVNTLVLENDELVGYNTDALGFYLSLKQKN 117
>pdb|3PHG|A Chain A, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe)
From Helicobacter Pylori
pdb|3PHG|B Chain B, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe)
From Helicobacter Pylori
pdb|3PHH|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate
pdb|3PHI|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate And Nadph
pdb|3PHI|B Chain B, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate And Nadph
pdb|3PHJ|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With 3-Dehydroshikimate
pdb|3PHJ|B Chain B, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With 3-Dehydroshikimate
Length = 269
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 19/101 (18%)
Query: 81 TLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRS-----------LTFKSNKRTFGPF 129
L+F +LRF GHY P++ I+S +T +R F
Sbjct: 25 CFLTFQKELRF--------LGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVC 76
Query: 130 GVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQSS 170
+G LV+ G+ DA+GFYLS KQ +
Sbjct: 77 DKIKGIALECGAVNTLVLENDELVGYNTDALGFYLSLKQKN 117
>pdb|3U28|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
pdb|3UAI|A Chain A, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 400
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 84 SFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSL 117
+P+ L+ ++ L+ SGHY P+ G SP+ R L
Sbjct: 21 EWPLLLKNFDKLLVR-SGHYTPIPAGSSPLKRDL 53
>pdb|3ZV0|C Chain C, Structure Of The Shq1p-Cbf5p Complex
pdb|3ZV0|D Chain D, Structure Of The Shq1p-Cbf5p Complex
Length = 195
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 84 SFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSL 117
+P+ L+ ++ L+ SGHY P+ G SP+ R L
Sbjct: 27 EWPLLLKNFDKLLVR-SGHYTPIPAGSSPLKRDL 59
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 9 GQKKSIVIGPWGGNGG-TSWDDGIYHGVREITLAYDRCI 46
G+ +++ P GN G D G G+REITL +D +
Sbjct: 203 GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALL 241
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 9 GQKKSIVIGPWGGNGG-TSWDDGIYHGVREITLAYDRCI 46
G+ +++ P GN G D G G+REITL +D +
Sbjct: 203 GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALL 241
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 9 GQKKSIVIGPWGGNGG-TSWDDGIYHGVREITLAYDRCI 46
G+ +++ P GN G D G G+REITL +D +
Sbjct: 198 GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALL 236
>pdb|2VZA|A Chain A, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|B Chain B, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|C Chain C, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|D Chain D, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|E Chain E, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|F Chain F, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|G Chain G, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|H Chain H, Type Iv Secretion System Effector Protein Bepa
Length = 298
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 123 KRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQSSKLLQRVQKGLQR 182
K TF G PFTF+ + R+GW K + + +Q+GLQR
Sbjct: 69 KNTFEWAGYLRHIPFTFADGTTAAMPEMKRTGW-----------KNAFAIGDEIQEGLQR 117
Query: 183 LASTTAKSS 191
L T A+ +
Sbjct: 118 LDQTLAEKN 126
>pdb|3SLU|A Chain A, Crystal Structure Of Nmb0315
pdb|3SLU|B Chain B, Crystal Structure Of Nmb0315
Length = 371
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 129 FGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAI 160
+ +GTP S DG V+ FKGR G Y +A+
Sbjct: 251 YAAPQGTPVRASADG--VITFKGRKGGYGNAV 280
>pdb|2JK8|A Chain A, Type Iv Secretion System Effector Protein Bepa Complexed
With A Pyrophosphate Moiety
pdb|2JK8|B Chain B, Type Iv Secretion System Effector Protein Bepa Complexed
With A Pyrophosphate Moiety
Length = 302
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 123 KRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQSSKLLQRVQKGLQR 182
K TF G PFTF+ + R+GW K + + +Q+GLQR
Sbjct: 77 KNTFEWAGYLRHIPFTFADGTTAAMPEMKRTGW-----------KNAFAIGDEIQEGLQR 125
Query: 183 LASTTAKSS 191
L T A+ +
Sbjct: 126 LDQTLAEKN 134
>pdb|3MB8|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
From Toxoplasma Gondii In Complex With Immucillin-H
pdb|3MB8|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
From Toxoplasma Gondii In Complex With Immucillin-H
Length = 279
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 40 LAYDRCIDSIRVVYDKKGNPVTAEKHG 66
LAY+R S RVVYD + P+T HG
Sbjct: 46 LAYNREYRSFRVVYDSQ--PITVISHG 70
>pdb|2VY3|A Chain A, Type Iv Secretion System Effector Protein Bepa
pdb|2VY3|B Chain B, Type Iv Secretion System Effector Protein Bepa
Length = 302
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 123 KRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQSSKLLQRVQKGLQR 182
K TF G PFTF+ R+GW K + + +Q+GLQR
Sbjct: 77 KNTFEWAGYLRHIPFTFADGTTAAXPEXKRTGW-----------KNAFAIGDEIQEGLQR 125
Query: 183 LASTTAKSS 191
L T A+ +
Sbjct: 126 LDQTLAEKN 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,725,954
Number of Sequences: 62578
Number of extensions: 297156
Number of successful extensions: 895
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 47
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)