Query 037528
Match_columns 158
No_of_seqs 268 out of 1247
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 13:09:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0031 Myosin regulatory ligh 99.7 1.4E-17 3E-22 121.4 8.2 102 6-119 17-119 (171)
2 COG5126 FRQ1 Ca2+-binding prot 99.6 1.5E-15 3.3E-20 112.5 9.3 101 10-119 9-110 (160)
3 KOG0027 Calmodulin and related 99.6 3E-15 6.6E-20 110.1 9.3 101 15-119 2-103 (151)
4 KOG0030 Myosin essential light 99.6 1.4E-15 3.1E-20 109.2 6.5 103 14-122 4-109 (152)
5 cd05022 S-100A13 S-100A13: S-1 99.5 3.3E-13 7.2E-18 91.3 8.0 70 17-86 4-77 (89)
6 PF13499 EF-hand_7: EF-hand do 99.4 1.3E-12 2.8E-17 82.8 8.6 61 22-82 1-66 (66)
7 cd05027 S-100B S-100B: S-100B 99.4 1.6E-12 3.5E-17 87.7 8.8 69 18-86 5-81 (88)
8 smart00027 EH Eps15 homology d 99.4 3E-12 6.6E-17 87.4 9.3 73 14-87 3-75 (96)
9 PTZ00183 centrin; Provisional 99.4 8E-12 1.7E-16 91.1 11.0 98 13-118 9-107 (158)
10 COG5126 FRQ1 Ca2+-binding prot 99.3 1.1E-11 2.3E-16 92.0 9.3 65 20-84 91-156 (160)
11 KOG0027 Calmodulin and related 99.3 9.2E-12 2E-16 91.5 8.5 66 19-84 83-149 (151)
12 cd05026 S-100Z S-100Z: S-100Z 99.3 1.3E-11 2.9E-16 84.0 8.6 68 18-85 7-82 (93)
13 KOG0028 Ca2+-binding protein ( 99.3 2.2E-11 4.8E-16 89.6 9.7 95 14-116 26-121 (172)
14 cd05025 S-100A1 S-100A1: S-100 99.3 2.5E-11 5.3E-16 82.2 8.8 68 19-86 7-82 (92)
15 cd05031 S-100A10_like S-100A10 99.3 2.8E-11 6.1E-16 82.3 8.5 67 19-85 6-80 (94)
16 PTZ00184 calmodulin; Provision 99.3 5E-11 1.1E-15 85.7 10.0 97 14-118 4-101 (149)
17 cd05029 S-100A6 S-100A6: S-100 99.3 3.9E-11 8.4E-16 81.0 8.7 70 17-86 6-81 (88)
18 cd00052 EH Eps15 homology doma 99.3 2.2E-11 4.9E-16 76.8 7.0 62 24-86 2-63 (67)
19 cd00213 S-100 S-100: S-100 dom 99.3 3.3E-11 7.2E-16 80.7 7.8 70 17-86 4-81 (88)
20 KOG0041 Predicted Ca2+-binding 99.1 1.9E-10 4.2E-15 87.6 7.5 81 13-93 91-172 (244)
21 cd05023 S-100A11 S-100A11: S-1 99.1 5.1E-10 1.1E-14 75.6 8.6 70 17-86 5-82 (89)
22 PLN02964 phosphatidylserine de 99.1 1E-09 2.2E-14 96.9 9.9 94 13-119 135-233 (644)
23 cd00051 EFh EF-hand, calcium b 99.0 1.7E-09 3.8E-14 65.6 7.5 60 23-82 2-62 (63)
24 PTZ00183 centrin; Provisional 99.0 5.4E-09 1.2E-13 76.0 9.5 63 21-83 90-153 (158)
25 PTZ00184 calmodulin; Provision 99.0 6.4E-09 1.4E-13 74.6 9.7 63 21-83 84-147 (149)
26 PF13833 EF-hand_8: EF-hand do 99.0 4.4E-09 9.5E-14 64.0 7.5 51 34-84 1-53 (54)
27 PF14658 EF-hand_9: EF-hand do 99.0 4.4E-09 9.5E-14 66.9 7.2 59 26-84 3-64 (66)
28 cd05030 calgranulins Calgranul 98.9 6.2E-09 1.4E-13 70.1 7.5 68 18-85 5-80 (88)
29 cd00252 SPARC_EC SPARC_EC; ext 98.9 5.4E-09 1.2E-13 74.0 7.4 64 16-82 43-106 (116)
30 KOG0028 Ca2+-binding protein ( 98.9 1E-08 2.2E-13 75.6 8.7 66 19-84 104-170 (172)
31 KOG0034 Ca2+/calmodulin-depend 98.9 1.3E-08 2.9E-13 77.5 9.0 79 3-83 88-174 (187)
32 KOG0037 Ca2+-binding protein, 98.9 1.3E-08 2.8E-13 78.4 8.3 68 19-86 122-190 (221)
33 KOG0044 Ca2+ sensor (EF-Hand s 98.7 4.7E-08 1E-12 74.8 7.8 84 2-87 47-131 (193)
34 PLN02964 phosphatidylserine de 98.7 8.6E-08 1.9E-12 84.9 10.2 74 14-87 172-246 (644)
35 PF12763 EF-hand_4: Cytoskelet 98.7 8.8E-08 1.9E-12 66.5 8.1 71 13-85 2-72 (104)
36 KOG0037 Ca2+-binding protein, 98.7 5E-08 1.1E-12 75.2 7.1 88 20-122 56-145 (221)
37 KOG0044 Ca2+ sensor (EF-Hand s 98.6 1.2E-07 2.7E-12 72.5 7.1 96 13-119 21-118 (193)
38 cd05024 S-100A10 S-100A10: A s 98.6 3.4E-07 7.3E-12 62.0 8.4 68 18-86 5-78 (91)
39 PF00036 EF-hand_1: EF hand; 98.5 1.5E-07 3.2E-12 50.5 3.9 27 23-49 2-28 (29)
40 KOG0030 Myosin essential light 98.4 1.5E-06 3.2E-11 62.9 7.7 66 16-82 83-149 (152)
41 KOG0031 Myosin regulatory ligh 98.4 1.5E-06 3.2E-11 64.0 7.7 63 21-83 101-164 (171)
42 PF13405 EF-hand_6: EF-hand do 98.4 5.8E-07 1.3E-11 48.7 3.9 30 22-51 1-31 (31)
43 KOG0046 Ca2+-binding actin-bun 98.4 1.6E-06 3.4E-11 74.4 8.3 77 11-88 9-89 (627)
44 PF00036 EF-hand_1: EF hand; 98.4 8.1E-07 1.7E-11 47.6 4.2 28 57-84 1-28 (29)
45 KOG0036 Predicted mitochondria 98.3 4.4E-06 9.5E-11 70.0 8.2 65 19-83 80-145 (463)
46 KOG0036 Predicted mitochondria 98.2 6.8E-06 1.5E-10 68.9 8.6 72 14-85 7-80 (463)
47 KOG0038 Ca2+-binding kinase in 98.2 7.4E-06 1.6E-10 60.0 7.3 61 24-84 111-177 (189)
48 PRK12309 transaldolase/EF-hand 98.1 1.1E-05 2.5E-10 67.9 8.2 57 17-85 330-386 (391)
49 KOG0040 Ca2+-binding actin-bun 98.1 1.5E-05 3.3E-10 75.2 9.4 88 13-103 2245-2340(2399)
50 KOG0377 Protein serine/threoni 98.1 1.1E-05 2.4E-10 68.3 6.7 68 20-87 546-618 (631)
51 PF14788 EF-hand_10: EF hand; 98.0 2.8E-05 6E-10 47.0 6.4 49 37-85 1-50 (51)
52 KOG0034 Ca2+/calmodulin-depend 98.0 3E-05 6.6E-10 59.2 8.2 96 14-120 26-123 (187)
53 PF13202 EF-hand_5: EF hand; P 98.0 7.8E-06 1.7E-10 42.2 3.4 23 24-46 2-24 (25)
54 PF13202 EF-hand_5: EF hand; P 97.7 8E-05 1.7E-09 38.4 3.7 25 58-82 1-25 (25)
55 PF13499 EF-hand_7: EF-hand do 97.7 9.8E-05 2.1E-09 46.2 4.8 56 58-118 2-57 (66)
56 PF10591 SPARC_Ca_bdg: Secrete 97.7 2.8E-05 6.2E-10 54.7 2.4 61 19-80 52-112 (113)
57 KOG4223 Reticulocalbin, calume 97.7 0.00011 2.4E-09 59.8 5.9 67 20-86 162-230 (325)
58 KOG4223 Reticulocalbin, calume 97.5 0.00024 5.1E-09 58.0 6.1 70 16-85 72-142 (325)
59 PF13833 EF-hand_8: EF-hand do 97.5 0.00044 9.4E-09 41.6 5.4 45 2-49 8-53 (54)
60 KOG4065 Uncharacterized conser 97.5 0.00046 1E-08 48.7 6.0 67 13-81 61-142 (144)
61 PF13405 EF-hand_6: EF-hand do 97.3 0.00048 1E-08 37.0 4.1 27 57-83 1-27 (31)
62 KOG4251 Calcium binding protei 97.1 0.00054 1.2E-08 54.4 3.9 68 19-86 99-170 (362)
63 smart00054 EFh EF-hand, calciu 97.1 0.00074 1.6E-08 33.9 3.0 27 23-49 2-28 (29)
64 KOG0042 Glycerol-3-phosphate d 96.8 0.0041 8.8E-08 54.5 6.6 77 14-90 586-663 (680)
65 smart00054 EFh EF-hand, calciu 96.7 0.003 6.4E-08 31.5 3.3 27 58-84 2-28 (29)
66 cd05022 S-100A13 S-100A13: S-1 96.5 0.0065 1.4E-07 40.9 4.8 47 3-51 30-77 (89)
67 PF09279 EF-hand_like: Phospho 96.4 0.018 3.9E-07 37.7 6.3 62 22-84 1-69 (83)
68 KOG0377 Protein serine/threoni 96.3 0.065 1.4E-06 46.0 10.5 68 20-87 463-578 (631)
69 cd02249 ZZ Zinc finger, ZZ typ 96.2 0.0011 2.4E-08 39.0 -0.0 37 91-133 2-38 (46)
70 KOG2562 Protein phosphatase 2 96.2 0.015 3.3E-07 49.7 6.6 83 25-118 282-368 (493)
71 KOG1029 Endocytic adaptor prot 96.2 0.0087 1.9E-07 54.2 5.1 74 15-89 189-265 (1118)
72 KOG4236 Serine/threonine prote 96.2 0.0027 5.8E-08 55.7 1.9 38 90-127 279-321 (888)
73 KOG4236 Serine/threonine prote 96.2 0.0029 6.3E-08 55.5 2.1 34 89-122 156-189 (888)
74 cd02340 ZZ_NBR1_like Zinc fing 96.0 0.0017 3.6E-08 37.9 -0.1 32 91-127 2-33 (43)
75 cd05029 S-100A6 S-100A6: S-100 95.9 0.014 3.1E-07 39.1 4.2 47 2-51 32-81 (88)
76 cd00051 EFh EF-hand, calcium b 95.8 0.029 6.2E-07 32.9 4.8 51 58-117 2-52 (63)
77 KOG1955 Ral-GTPase effector RA 95.6 0.038 8.2E-07 48.0 6.4 75 14-89 224-298 (737)
78 KOG2643 Ca2+ binding protein, 95.5 0.0082 1.8E-07 51.1 2.2 58 30-88 208-265 (489)
79 cd05026 S-100Z S-100Z: S-100Z 95.5 0.027 5.9E-07 37.9 4.2 32 21-52 53-84 (93)
80 cd05023 S-100A11 S-100A11: S-1 95.5 0.019 4.2E-07 38.5 3.4 31 21-51 52-82 (89)
81 PF14788 EF-hand_10: EF hand; 95.5 0.052 1.1E-06 32.8 4.9 30 21-50 21-50 (51)
82 KOG2643 Ca2+ binding protein, 95.3 0.036 7.8E-07 47.3 5.3 29 59-87 428-456 (489)
83 KOG2243 Ca2+ release channel ( 95.2 0.029 6.2E-07 53.9 4.8 59 26-84 4062-4120(5019)
84 cd05031 S-100A10_like S-100A10 95.2 0.034 7.3E-07 37.3 4.0 32 21-52 51-82 (94)
85 PF00569 ZZ: Zinc finger, ZZ t 95.1 0.00097 2.1E-08 39.4 -3.4 39 90-134 5-44 (46)
86 cd02343 ZZ_EF Zinc finger, ZZ 95.0 0.0063 1.4E-07 36.3 -0.1 32 91-127 2-33 (48)
87 cd00052 EH Eps15 homology doma 94.9 0.071 1.5E-06 32.7 4.6 48 59-117 2-49 (67)
88 cd05027 S-100B S-100B: S-100B 94.9 0.085 1.8E-06 35.2 5.2 30 21-50 51-80 (88)
89 smart00291 ZnF_ZZ Zinc-binding 94.8 0.0061 1.3E-07 35.5 -0.5 39 90-134 5-43 (44)
90 PF05517 p25-alpha: p25-alpha 94.6 0.43 9.3E-06 35.2 8.8 66 23-88 4-73 (154)
91 cd05030 calgranulins Calgranul 94.5 0.098 2.1E-06 34.8 4.9 31 20-50 50-80 (88)
92 KOG0751 Mitochondrial aspartat 94.4 0.29 6.4E-06 42.7 8.5 97 15-122 30-129 (694)
93 smart00027 EH Eps15 homology d 94.3 0.17 3.7E-06 33.9 5.7 71 57-139 11-91 (96)
94 KOG3555 Ca2+-binding proteogly 94.2 0.048 1E-06 45.3 3.2 67 15-84 244-310 (434)
95 cd02339 ZZ_Mind_bomb Zinc fing 94.1 0.017 3.6E-07 34.0 0.3 32 91-127 2-34 (45)
96 KOG4666 Predicted phosphate ac 94.0 0.077 1.7E-06 43.9 4.0 60 23-83 298-358 (412)
97 cd02341 ZZ_ZZZ3 Zinc finger, Z 93.9 0.017 3.8E-07 34.4 0.2 38 92-134 3-41 (48)
98 cd05024 S-100A10 S-100A10: A s 93.5 0.11 2.4E-06 35.1 3.5 32 21-52 48-79 (91)
99 cd00213 S-100 S-100: S-100 dom 93.2 0.26 5.6E-06 32.3 5.0 59 56-118 8-68 (88)
100 KOG4578 Uncharacterized conser 93.2 0.11 2.3E-06 43.1 3.5 65 21-86 333-400 (421)
101 cd00252 SPARC_EC SPARC_EC; ext 92.9 0.25 5.4E-06 34.8 4.7 29 54-82 46-74 (116)
102 KOG0038 Ca2+-binding kinase in 92.8 0.23 5.1E-06 36.7 4.6 62 28-89 78-141 (189)
103 cd05025 S-100A1 S-100A1: S-100 92.8 0.15 3.2E-06 34.0 3.4 31 21-51 52-82 (92)
104 KOG0751 Mitochondrial aspartat 92.7 0.24 5.1E-06 43.2 5.2 93 29-122 82-200 (694)
105 KOG0169 Phosphoinositide-speci 92.0 0.43 9.3E-06 43.3 6.1 71 17-87 132-203 (746)
106 KOG0035 Ca2+-binding actin-bun 91.6 0.81 1.8E-05 42.5 7.5 76 12-87 738-819 (890)
107 cd02337 ZZ_CBP Zinc finger, ZZ 91.5 0.062 1.3E-06 30.9 0.2 35 91-134 2-36 (41)
108 cd02335 ZZ_ADA2 Zinc finger, Z 91.5 0.056 1.2E-06 32.2 -0.0 32 91-127 2-34 (49)
109 cd02345 ZZ_dah Zinc finger, ZZ 91.4 0.045 9.8E-07 32.7 -0.5 32 91-127 2-34 (49)
110 KOG0998 Synaptic vesicle prote 91.2 0.11 2.4E-06 48.2 1.6 74 14-88 276-349 (847)
111 cd02338 ZZ_PCMF_like Zinc fing 91.1 0.042 9.1E-07 32.8 -0.8 32 91-127 2-34 (49)
112 KOG4251 Calcium binding protei 90.8 0.6 1.3E-05 37.4 5.2 60 22-81 282-342 (362)
113 PF05042 Caleosin: Caleosin re 90.7 0.84 1.8E-05 34.5 5.7 62 23-84 9-124 (174)
114 cd02336 ZZ_RSC8 Zinc finger, Z 90.7 0.058 1.3E-06 31.7 -0.4 41 91-137 2-42 (45)
115 PF14658 EF-hand_9: EF-hand do 90.6 0.98 2.1E-05 28.7 5.1 28 22-49 36-64 (66)
116 KOG0696 Serine/threonine prote 89.9 0.2 4.3E-06 43.2 2.0 37 89-125 121-157 (683)
117 KOG3866 DNA-binding protein of 89.9 0.29 6.2E-06 40.4 2.8 62 26-87 249-327 (442)
118 PRK12309 transaldolase/EF-hand 89.4 0.57 1.2E-05 39.8 4.3 35 15-49 351-385 (391)
119 KOG2996 Rho guanine nucleotide 88.6 0.36 7.8E-06 42.9 2.7 42 90-131 535-576 (865)
120 PF00046 Homeobox: Homeobox do 88.5 2.5 5.4E-05 25.1 5.7 45 14-64 6-50 (57)
121 cd02344 ZZ_HERC2 Zinc finger, 88.3 0.14 3E-06 30.1 -0.0 41 91-140 2-43 (45)
122 cd00086 homeodomain Homeodomai 88.2 2.8 6.1E-05 24.8 5.8 45 14-64 6-50 (59)
123 KOG1029 Endocytic adaptor prot 88.1 2.6 5.6E-05 38.9 7.6 70 15-86 10-79 (1118)
124 KOG4666 Predicted phosphate ac 88.0 1.2 2.6E-05 37.0 5.2 66 21-86 259-326 (412)
125 KOG4582 Uncharacterized conser 87.9 0.18 4E-06 40.8 0.4 43 90-141 153-196 (278)
126 PF00130 C1_1: Phorbol esters/ 86.7 0.066 1.4E-06 31.9 -2.2 34 88-121 10-43 (53)
127 cd02334 ZZ_dystrophin Zinc fin 86.5 0.16 3.5E-06 30.3 -0.5 32 91-127 2-34 (49)
128 PF08726 EFhand_Ca_insen: Ca2+ 86.4 0.77 1.7E-05 29.4 2.6 52 22-80 7-65 (69)
129 KOG1707 Predicted Ras related/ 86.1 1.3 2.9E-05 39.3 4.7 67 14-84 308-377 (625)
130 PF12763 EF-hand_4: Cytoskelet 85.6 1.6 3.4E-05 30.1 4.1 34 13-49 38-71 (104)
131 cd00029 C1 Protein kinase C co 85.5 0.41 8.9E-06 27.7 0.9 33 89-121 11-43 (50)
132 PF05042 Caleosin: Caleosin re 83.2 5.4 0.00012 30.1 6.2 61 21-82 96-164 (174)
133 smart00109 C1 Protein kinase C 83.2 0.44 9.5E-06 27.3 0.3 34 88-122 10-43 (49)
134 KOG1011 Neurotransmitter relea 82.3 0.83 1.8E-05 41.3 1.8 44 90-134 184-235 (1283)
135 KOG2562 Protein phosphatase 2 82.0 3.5 7.6E-05 35.7 5.4 66 24-89 142-207 (493)
136 PF09069 EF-hand_3: EF-hand; 81.3 14 0.0003 24.9 7.6 60 21-83 3-74 (90)
137 KOG3555 Ca2+-binding proteogly 80.1 0.79 1.7E-05 38.3 0.9 79 21-99 211-295 (434)
138 KOG0696 Serine/threonine prote 78.2 0.63 1.4E-05 40.2 -0.2 36 87-122 54-89 (683)
139 KOG1707 Predicted Ras related/ 78.1 9.2 0.0002 34.2 6.9 33 14-46 188-220 (625)
140 smart00389 HOX Homeodomain. DN 74.9 14 0.00031 21.5 5.6 45 14-64 6-50 (56)
141 PF07499 RuvA_C: RuvA, C-termi 74.7 8.5 0.00019 22.3 4.1 39 40-81 3-41 (47)
142 KOG0041 Predicted Ca2+-binding 72.8 5.4 0.00012 31.1 3.6 32 57-88 100-131 (244)
143 KOG4239 Ras GTPase effector RA 72.2 2.2 4.8E-05 35.1 1.5 38 90-127 63-105 (348)
144 KOG4347 GTPase-activating prot 72.2 5.2 0.00011 36.1 3.8 56 22-78 556-612 (671)
145 KOG2871 Uncharacterized conser 71.5 4.3 9.3E-05 34.4 3.0 63 21-83 309-373 (449)
146 KOG0040 Ca2+-binding actin-bun 71.4 10 0.00022 37.8 5.7 56 22-78 2297-2355(2399)
147 KOG1280 Uncharacterized conser 70.6 2 4.4E-05 35.8 0.9 43 90-136 9-52 (381)
148 PF00404 Dockerin_1: Dockerin 69.4 5.3 0.00011 19.5 1.9 15 31-45 1-15 (21)
149 TIGR01565 homeo_ZF_HD homeobox 68.2 7.4 0.00016 24.0 2.9 45 13-63 6-54 (58)
150 PF10591 SPARC_Ca_bdg: Secrete 68.1 6.5 0.00014 27.4 3.0 23 23-45 90-112 (113)
151 KOG4286 Dystrophin-like protei 68.0 7.1 0.00015 36.0 3.8 32 90-126 604-636 (966)
152 cd02342 ZZ_UBA_plant Zinc fing 67.6 1.4 3E-05 25.6 -0.4 34 91-129 2-36 (43)
153 PF08976 DUF1880: Domain of un 66.3 6.7 0.00015 27.7 2.7 32 53-84 4-35 (118)
154 KOG2301 Voltage-gated Ca2+ cha 65.7 3.4 7.4E-05 41.0 1.6 71 14-85 1410-1485(1592)
155 PF09068 EF-hand_2: EF hand; 63.6 33 0.00071 24.4 6.0 66 18-83 38-124 (127)
156 PF14513 DAG_kinase_N: Diacylg 63.2 14 0.00031 26.8 4.1 53 36-89 6-65 (138)
157 KOG0694 Serine/threonine prote 61.9 3.9 8.4E-05 37.1 1.1 35 88-122 240-274 (694)
158 KOG0843 Transcription factor E 61.7 23 0.00049 27.1 5.0 46 13-64 107-152 (197)
159 PF07308 DUF1456: Protein of u 61.0 32 0.00069 21.8 4.9 27 39-65 15-42 (68)
160 PF08414 NADPH_Ox: Respiratory 60.0 35 0.00076 23.4 5.2 66 19-88 28-96 (100)
161 PF01023 S_100: S-100/ICaBP ty 59.2 32 0.00069 19.7 4.4 30 20-49 5-36 (44)
162 cd07313 terB_like_2 tellurium 59.0 20 0.00043 23.8 4.1 50 34-84 12-65 (104)
163 PF09279 EF-hand_like: Phospho 58.8 37 0.00081 21.6 5.2 43 57-100 1-44 (83)
164 KOG0457 Histone acetyltransfer 58.5 6 0.00013 33.9 1.6 35 88-127 13-48 (438)
165 PF10955 DUF2757: Protein of u 58.3 5.7 0.00012 25.9 1.1 47 36-100 15-63 (76)
166 PF03672 UPF0154: Uncharacteri 56.4 23 0.00049 22.4 3.6 30 36-65 30-60 (64)
167 KOG3449 60S acidic ribosomal p 55.9 53 0.0011 23.0 5.6 54 24-82 4-58 (112)
168 PLN02952 phosphoinositide phos 55.4 61 0.0013 29.3 7.4 54 34-88 13-69 (599)
169 PF02207 zf-UBR: Putative zinc 54.3 8.1 0.00018 24.5 1.4 25 105-132 12-37 (71)
170 PLN02228 Phosphoinositide phos 53.7 58 0.0013 29.2 7.0 61 22-84 25-92 (567)
171 PLN02222 phosphoinositide phos 53.5 48 0.001 29.8 6.4 61 22-84 26-90 (581)
172 PRK00523 hypothetical protein; 52.1 28 0.00061 22.5 3.5 30 36-65 38-68 (72)
173 KOG0998 Synaptic vesicle prote 52.0 9.4 0.0002 35.7 1.9 63 21-84 11-73 (847)
174 cd08028 LARP_3 La RNA-binding 49.9 60 0.0013 21.4 5.0 63 1-64 1-65 (82)
175 PF13551 HTH_29: Winged helix- 49.1 75 0.0016 20.9 6.3 50 15-64 58-110 (112)
176 PLN02230 phosphoinositide phos 47.9 81 0.0018 28.5 7.0 63 21-84 29-102 (598)
177 KOG0169 Phosphoinositide-speci 47.4 1.6E+02 0.0035 27.4 8.7 78 21-101 172-250 (746)
178 KOG1954 Endocytosis/signaling 46.6 27 0.00059 30.0 3.6 57 23-81 446-502 (532)
179 TIGR03826 YvyF flagellar opero 46.3 46 0.001 24.1 4.4 80 18-108 27-113 (137)
180 KOG3866 DNA-binding protein of 46.0 59 0.0013 27.2 5.4 74 10-85 190-273 (442)
181 COG3763 Uncharacterized protei 45.2 39 0.00085 21.7 3.4 31 36-66 37-68 (71)
182 COG4103 Uncharacterized protei 45.1 85 0.0019 23.0 5.5 63 20-85 29-95 (148)
183 PF09373 PMBR: Pseudomurein-bi 44.9 26 0.00057 18.7 2.3 18 70-87 2-19 (33)
184 PLN02952 phosphoinositide phos 44.5 1E+02 0.0022 27.9 7.1 62 21-83 38-109 (599)
185 PF03979 Sigma70_r1_1: Sigma-7 44.4 25 0.00054 22.8 2.6 35 34-69 18-52 (82)
186 PTZ00373 60S Acidic ribosomal 44.1 1.1E+02 0.0024 21.4 6.0 50 26-80 8-58 (112)
187 PRK01844 hypothetical protein; 43.9 43 0.00093 21.6 3.5 29 37-65 38-67 (72)
188 KOG4347 GTPase-activating prot 43.6 43 0.00094 30.4 4.6 36 54-89 553-588 (671)
189 KOG0488 Transcription factor B 42.8 50 0.0011 27.2 4.6 46 13-64 177-222 (309)
190 PF09068 EF-hand_2: EF hand; 41.9 38 0.00081 24.1 3.3 28 23-50 99-126 (127)
191 PF01885 PTS_2-RNA: RNA 2'-pho 41.3 54 0.0012 24.8 4.3 37 31-67 26-63 (186)
192 KOG4065 Uncharacterized conser 41.3 35 0.00075 24.4 3.0 31 16-46 111-142 (144)
193 PF12419 DUF3670: SNF2 Helicas 40.6 70 0.0015 22.9 4.7 48 34-81 80-138 (141)
194 PRK09430 djlA Dna-J like membr 38.6 1.4E+02 0.0031 23.9 6.5 62 24-89 56-125 (267)
195 PF08461 HTH_12: Ribonuclease 38.6 46 0.00099 20.7 3.0 36 34-69 10-46 (66)
196 TIGR01848 PHA_reg_PhaR polyhyd 37.6 1.4E+02 0.003 20.8 5.4 47 28-74 10-67 (107)
197 KOG0129 Predicted RNA-binding 37.3 14 0.0003 32.5 0.6 20 69-88 414-433 (520)
198 PF07879 PHB_acc_N: PHB/PHA ac 36.6 88 0.0019 19.7 4.0 22 28-49 10-31 (64)
199 PF05256 UPF0223: Uncharacteri 36.3 55 0.0012 21.9 3.2 58 14-72 10-69 (88)
200 PRK00819 RNA 2'-phosphotransfe 36.2 81 0.0018 23.8 4.5 36 31-66 27-63 (179)
201 PF05099 TerB: Tellurite resis 36.0 16 0.00035 25.6 0.7 48 34-82 36-87 (140)
202 smart00396 ZnF_UBR1 Putative z 35.9 24 0.00052 22.4 1.4 21 107-127 14-35 (71)
203 KOG1955 Ral-GTPase effector RA 34.9 38 0.00082 30.1 2.8 29 20-48 264-292 (737)
204 PRK04387 hypothetical protein; 34.7 57 0.0012 22.0 3.1 58 15-73 11-70 (90)
205 TIGR01639 P_fal_TIGR01639 Plas 34.4 83 0.0018 19.3 3.6 29 37-65 9-38 (61)
206 KOG1265 Phospholipase C [Lipid 33.1 1.4E+02 0.0031 28.5 6.3 63 22-84 222-299 (1189)
207 PF01325 Fe_dep_repress: Iron 32.8 1.1E+02 0.0024 18.5 4.0 53 15-75 2-54 (60)
208 PF05294 Toxin_5: Scorpion sho 31.7 28 0.00061 18.7 1.0 25 106-130 1-25 (32)
209 TIGR02675 tape_meas_nterm tape 31.5 53 0.0011 21.0 2.5 33 15-49 10-42 (75)
210 PRK14606 ruvA Holliday junctio 31.1 1.7E+02 0.0038 22.1 5.7 41 40-84 143-183 (188)
211 PF02758 PYRIN: PAAD/DAPIN/Pyr 30.8 93 0.002 20.1 3.7 40 7-46 4-43 (83)
212 cd05833 Ribosomal_P2 Ribosomal 30.3 1.5E+02 0.0033 20.5 4.8 55 26-85 6-61 (109)
213 PF09862 DUF2089: Protein of u 30.3 1.9E+02 0.0042 20.2 6.3 18 11-28 30-47 (113)
214 cd07316 terB_like_DjlA N-termi 29.9 1.4E+02 0.0031 19.5 4.6 12 73-84 53-64 (106)
215 PLN02223 phosphoinositide phos 29.2 2E+02 0.0043 25.8 6.3 62 22-84 17-92 (537)
216 KOG0694 Serine/threonine prote 28.9 19 0.00042 32.8 0.1 31 90-120 170-200 (694)
217 COG4476 Uncharacterized protei 28.9 74 0.0016 21.2 2.8 54 15-68 11-66 (90)
218 PF12174 RST: RCD1-SRO-TAF4 (R 28.8 67 0.0014 20.5 2.6 15 70-84 39-53 (70)
219 PF12588 PSDC: Phophatidylseri 28.7 1.3E+02 0.0027 22.0 4.3 27 23-49 22-51 (141)
220 PF12486 DUF3702: ImpA domain 27.7 93 0.002 22.8 3.5 32 18-49 66-97 (148)
221 PF13624 SurA_N_3: SurA N-term 27.3 76 0.0017 22.4 3.0 27 38-64 84-111 (154)
222 KOG4004 Matricellular protein 26.8 29 0.00063 27.1 0.7 56 27-84 193-250 (259)
223 TIGR03830 CxxCG_CxxCG_HTH puta 26.8 1.8E+02 0.0038 19.8 4.8 46 16-62 43-88 (127)
224 PF01316 Arg_repressor: Argini 26.8 1.2E+02 0.0026 19.2 3.5 30 37-66 19-49 (70)
225 KOG2419 Phosphatidylserine dec 26.7 85 0.0018 28.9 3.6 65 19-83 435-532 (975)
226 PF13834 DUF4193: Domain of un 26.6 18 0.00038 24.8 -0.4 20 104-123 71-98 (99)
227 COG5114 Histone acetyltransfer 26.6 30 0.00064 28.9 0.8 52 90-147 6-70 (432)
228 COG5347 GTPase-activating prot 26.5 20 0.00044 29.7 -0.2 44 108-152 22-77 (319)
229 PF07848 PaaX: PaaX-like prote 26.5 1.7E+02 0.0036 18.5 4.1 43 23-66 6-48 (70)
230 PF08006 DUF1700: Protein of u 25.9 2.4E+02 0.0053 20.7 5.7 58 3-65 5-64 (181)
231 TIGR03573 WbuX N-acetyl sugar 25.9 1.5E+02 0.0032 24.6 4.8 14 71-84 301-314 (343)
232 KOG0039 Ferric reductase, NADH 25.8 1.2E+02 0.0027 27.5 4.6 64 20-84 17-89 (646)
233 PF06569 DUF1128: Protein of u 25.2 1.9E+02 0.0042 18.5 4.2 37 14-52 32-68 (71)
234 PF09851 SHOCT: Short C-termin 25.0 1.2E+02 0.0025 15.9 3.5 25 18-48 3-27 (31)
235 PRK14602 ruvA Holliday junctio 24.5 2.7E+02 0.0059 21.3 5.8 42 40-83 155-196 (203)
236 PF05823 Gp-FAR-1: Nematode fa 24.4 56 0.0012 24.0 1.9 39 7-49 13-51 (154)
237 PF11116 DUF2624: Protein of u 23.9 2.3E+02 0.0049 18.9 5.9 50 38-87 15-65 (85)
238 TIGR02787 codY_Gpos GTP-sensin 23.7 3.7E+02 0.0081 21.6 6.4 50 12-66 174-223 (251)
239 KOG4403 Cell surface glycoprot 23.6 1.8E+02 0.0039 25.5 4.9 60 20-83 67-128 (575)
240 KOG4578 Uncharacterized conser 23.4 93 0.002 26.2 3.1 30 21-50 370-399 (421)
241 PF10437 Lip_prot_lig_C: Bacte 22.8 1.6E+02 0.0035 18.8 3.7 42 40-82 44-86 (86)
242 TIGR00269 conserved hypothetic 22.4 1.9E+02 0.0042 19.4 4.2 12 114-125 89-100 (104)
243 KOG0493 Transcription factor E 22.1 1.8E+02 0.004 23.6 4.4 46 13-64 251-296 (342)
244 COG5069 SAC6 Ca2+-binding acti 21.5 62 0.0013 28.6 1.8 58 23-80 26-83 (612)
245 cd02977 ArsC_family Arsenate R 21.3 2.1E+02 0.0046 18.8 4.2 56 27-84 26-85 (105)
246 cd08321 Pyrin_ASC-like Pyrin D 20.9 1.5E+02 0.0033 19.2 3.2 39 7-45 3-41 (82)
247 TIGR03849 arch_ComA phosphosul 20.8 2.7E+02 0.0059 22.1 5.2 49 34-82 167-223 (237)
248 KOG0483 Transcription factor H 20.8 2.3E+02 0.005 21.8 4.6 45 14-64 56-100 (198)
249 cd00171 Sec7 Sec7 domain; Doma 20.7 3.7E+02 0.008 20.1 10.2 32 70-104 147-178 (185)
250 COG3877 Uncharacterized protei 20.6 2.2E+02 0.0048 19.9 4.0 38 42-82 77-120 (122)
251 KOG0695 Serine/threonine prote 20.4 50 0.0011 28.2 1.0 34 87-120 139-172 (593)
252 PF08273 Prim_Zn_Ribbon: Zinc- 20.3 22 0.00049 20.1 -0.8 18 106-123 14-32 (40)
253 PF06014 DUF910: Bacterial pro 20.1 2.4E+02 0.0051 17.6 3.8 49 39-87 3-57 (62)
No 1
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.73 E-value=1.4e-17 Score=121.42 Aligned_cols=102 Identities=10% Similarity=0.207 Sum_probs=90.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 6 KVALAYYNSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 6 k~~~~~~~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
++..+++..+++.|+++++++|..+|+|+||.|+.++|+.++.++|. ++++++..|+++ ..|+|+|.-|++++..
T Consensus 17 rasSnvFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGe 92 (171)
T KOG0031|consen 17 RASSNVFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGE 92 (171)
T ss_pred cccchHHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHH
Confidence 34456778899999999999999999999999999999999999999 899999999998 7899999999999999
Q ss_pred hhcCCCcchhhHHHHHhhhhhcccccccCCcchhh
Q 037528 85 LKSRRPICGRCRIFITNEYFACMRCFETGSAAYSI 119 (158)
Q Consensus 85 ~~~~~~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~ 119 (158)
..+|..- +.+++.+|+|||.+++|.+-
T Consensus 93 kL~gtdp--------e~~I~~AF~~FD~~~~G~I~ 119 (171)
T KOG0031|consen 93 KLNGTDP--------EEVILNAFKTFDDEGSGKID 119 (171)
T ss_pred HhcCCCH--------HHHHHHHHHhcCccCCCccC
Confidence 9888721 55555667999999988764
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.64 E-value=1.5e-15 Score=112.51 Aligned_cols=101 Identities=19% Similarity=0.342 Sum_probs=88.4
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcC
Q 037528 10 AYYNSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSR 88 (158)
Q Consensus 10 ~~~~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~ 88 (158)
....+++++++++++++|..+|+|++|.|+..||..+|+.+|. |+..++.+++..+|. +.|.|+|.+|+.++.....+
T Consensus 9 ~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~ 87 (160)
T COG5126 9 LTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKR 87 (160)
T ss_pred hhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhcc
Confidence 3446899999999999999999999999999999999999999 999999999999999 89999999999999988764
Q ss_pred CCcchhhHHHHHhhhhhcccccccCCcchhh
Q 037528 89 RPICGRCRIFITNEYFACMRCFETGSAAYSI 119 (158)
Q Consensus 89 ~~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~ 119 (158)
..- ..-+..+|+.||++++|++.
T Consensus 88 ~~~--------~Eel~~aF~~fD~d~dG~Is 110 (160)
T COG5126 88 GDK--------EEELREAFKLFDKDHDGYIS 110 (160)
T ss_pred CCc--------HHHHHHHHHHhCCCCCceec
Confidence 421 33344456999999999874
No 3
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.62 E-value=3e-15 Score=110.08 Aligned_cols=101 Identities=24% Similarity=0.410 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcCCCcch
Q 037528 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSRRPICG 93 (158)
Q Consensus 15 ~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~~~c~ 93 (158)
++..+..+++++|+.+|++++|+|+..|+..+++.+|. |++.++..+++..|.+++|.|+|+||+.++........-
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~-- 79 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTD-- 79 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccc--
Confidence 46788899999999999999999999999999999999 999999999999999999999999999999877654310
Q ss_pred hhHHHHHhhhhhcccccccCCcchhh
Q 037528 94 RCRIFITNEYFACMRCFETGSAAYSI 119 (158)
Q Consensus 94 ~c~~~l~~~~~~~~~cfd~~~~~~~~ 119 (158)
...-...++.+|+.||.+++||+.
T Consensus 80 --~~~~~~el~eaF~~fD~d~~G~Is 103 (151)
T KOG0027|consen 80 --EEASSEELKEAFRVFDKDGDGFIS 103 (151)
T ss_pred --ccccHHHHHHHHHHHccCCCCcCc
Confidence 000122445557999999999875
No 4
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.61 E-value=1.4e-15 Score=109.22 Aligned_cols=103 Identities=19% Similarity=0.314 Sum_probs=87.4
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCC--CCCceeHHHHHHHHHHhhcCCC
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDID--GSGRLDFKEVLTLYYILKSRRP 90 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d--~dG~IsfeEFl~l~~~~~~~~~ 90 (158)
..+++++.+++++|..||..+||+|+..+..++|+.+|. ||+.++.+.+...+++ +-.+|+|++|++++..+.+.+.
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 456788899999999999999999999999999999999 9999999999988877 4578999999999999887663
Q ss_pred cchhhHHHHHhhhhhcccccccCCcchhhhHh
Q 037528 91 ICGRCRIFITNEYFACMRCFETGSAAYSICLE 122 (158)
Q Consensus 91 ~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~~ 122 (158)
.| .-++|++| +|+||++|||++.-.+
T Consensus 84 q~-t~edfveg-----LrvFDkeg~G~i~~ae 109 (152)
T KOG0030|consen 84 QG-TYEDFVEG-----LRVFDKEGNGTIMGAE 109 (152)
T ss_pred cC-cHHHHHHH-----HHhhcccCCcceeHHH
Confidence 22 12445555 4999999999987543
No 5
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.46 E-value=3.3e-13 Score=91.26 Aligned_cols=70 Identities=17% Similarity=0.315 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhhhcC-CCCcceeHHHHHHHHHh-cCC-CCH-HHHHHHHHHhCCCCCCceeHHHHHHHHHHhh
Q 037528 17 DEERRLFNQFFQSMDK-DGNRRVSYREFSDFMSL-QAH-DEN-MRTRDFFNQLDIDGSGRLDFKEVLTLYYILK 86 (158)
Q Consensus 17 ~~~~~~~~~~F~~~D~-d~dG~Is~~El~~~l~~-lg~-~~~-~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~ 86 (158)
+..+..+..+|+.||+ +++|+|+..||+.+|++ +|. ++. .+++++++.+|.|+||.|+|+||+.++..+.
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3456789999999999 99999999999999999 887 677 8999999999999999999999999987653
No 6
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.43 E-value=1.3e-12 Score=82.82 Aligned_cols=61 Identities=26% Similarity=0.512 Sum_probs=53.8
Q ss_pred HHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHH----HHHHHHHhCCCCCCceeHHHHHHHH
Q 037528 22 LFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMR----TRDFFNQLDIDGSGRLDFKEVLTLY 82 (158)
Q Consensus 22 ~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~----~~~~~~~lD~d~dG~IsfeEFl~l~ 82 (158)
+++++|+.+|+|++|+|+.+|+..+++.++. .++.+ ++.+|+.+|.+++|.|+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3688999999999999999999999999987 54544 5556999999999999999999875
No 7
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.41 E-value=1.6e-12 Score=87.74 Aligned_cols=69 Identities=17% Similarity=0.413 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhhc-CCCCc-ceeHHHHHHHHHh-----cCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhh
Q 037528 18 EERRLFNQFFQSMD-KDGNR-RVSYREFSDFMSL-----QAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILK 86 (158)
Q Consensus 18 ~~~~~~~~~F~~~D-~d~dG-~Is~~El~~~l~~-----lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~ 86 (158)
..+..++++|+.|| ++|+| .|+..||+.+|+. +|. +++.+++.+++.+|.|++|.|+|+||+.++..+.
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 44677999999998 79999 6999999999999 888 8999999999999999999999999999887553
No 8
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.40 E-value=3e-12 Score=87.36 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=67.1
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhc
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKS 87 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~ 87 (158)
.++++++..++++|..+|++++|.|+.+|++.+++..|. ++.++..++..+|.+++|.|+|+||+.++..+..
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~-~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGL-PQTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999999886 8889999999999999999999999998876543
No 9
>PTZ00183 centrin; Provisional
Probab=99.37 E-value=8e-12 Score=91.05 Aligned_cols=98 Identities=21% Similarity=0.349 Sum_probs=83.1
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcCCCc
Q 037528 13 NSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSRRPI 91 (158)
Q Consensus 13 ~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~~~ 91 (158)
.++++.+++++..+|..+|.+++|.|+..||..+++.+|. ++...+..++..+|.+++|.|+|+||+.++.......+.
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 88 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP 88 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc
Confidence 5688999999999999999999999999999999999998 788899999999999999999999999988765433321
Q ss_pred chhhHHHHHhhhhhcccccccCCcchh
Q 037528 92 CGRCRIFITNEYFACMRCFETGSAAYS 118 (158)
Q Consensus 92 c~~c~~~l~~~~~~~~~cfd~~~~~~~ 118 (158)
+.-+..+ |+.+|.+++|+.
T Consensus 89 ----~~~l~~~----F~~~D~~~~G~i 107 (158)
T PTZ00183 89 ----REEILKA----FRLFDDDKTGKI 107 (158)
T ss_pred ----HHHHHHH----HHHhCCCCCCcC
Confidence 3344444 588999988853
No 10
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.33 E-value=1.1e-11 Score=92.04 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=61.2
Q ss_pred HHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 20 RRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 20 ~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
.++++.+|+.||+|++|+|+..||..+++.+|. .++++++.+++.+|.+++|.|+|++|..++..
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 457889999999999999999999999999999 89999999999999999999999999998753
No 11
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.32 E-value=9.2e-12 Score=91.51 Aligned_cols=66 Identities=20% Similarity=0.443 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 19 ERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 19 ~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
..++++++|+.||+|++|+|+..||+.+|..+|. .+..++..+++..|.|+||.|+|++|+.++..
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 3568999999999999999999999999999999 89999999999999999999999999998853
No 12
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.32 E-value=1.3e-11 Score=83.96 Aligned_cols=68 Identities=22% Similarity=0.420 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhhc-CCCCc-ceeHHHHHHHHHh-c----CC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHh
Q 037528 18 EERRLFNQFFQSMD-KDGNR-RVSYREFSDFMSL-Q----AH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYIL 85 (158)
Q Consensus 18 ~~~~~~~~~F~~~D-~d~dG-~Is~~El~~~l~~-l----g~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~ 85 (158)
.-+..+.++|+.|| +|++| +|+..||+.+++. + +. +++.++.++++.+|.|++|.|+|+||+.++..+
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 44677889999999 78998 5999999999976 2 23 577899999999999999999999999998765
No 13
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=2.2e-11 Score=89.55 Aligned_cols=95 Identities=17% Similarity=0.307 Sum_probs=83.3
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcCCCcc
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSRRPIC 92 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~~~c 92 (158)
.+++++.++++..|..||.+++|+|+.+||..+++.+|. |+..++.+++...|+++.|.|+|++|+..+..+...+..
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt- 104 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDT- 104 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCc-
Confidence 467888999999999999999999999999999999999 999999999999999999999999999999887765521
Q ss_pred hhhHHHHHhhhhhcccccccCCcc
Q 037528 93 GRCRIFITNEYFACMRCFETGSAA 116 (158)
Q Consensus 93 ~~c~~~l~~~~~~~~~cfd~~~~~ 116 (158)
.+-+..+ |+-||.+.+|
T Consensus 105 ---~eEi~~a----frl~D~D~~G 121 (172)
T KOG0028|consen 105 ---KEEIKKA----FRLFDDDKTG 121 (172)
T ss_pred ---HHHHHHH----HHcccccCCC
Confidence 4445555 5999888777
No 14
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.29 E-value=2.5e-11 Score=82.24 Aligned_cols=68 Identities=22% Similarity=0.459 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhhc-CCCCc-ceeHHHHHHHHHh-c----CC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhh
Q 037528 19 ERRLFNQFFQSMD-KDGNR-RVSYREFSDFMSL-Q----AH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILK 86 (158)
Q Consensus 19 ~~~~~~~~F~~~D-~d~dG-~Is~~El~~~l~~-l----g~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~ 86 (158)
-+..++++|+.|| ++++| .|+..|++.+|+. + +. +++.+++.+++.+|.+++|.|+|+||+.++..+.
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 3467899999997 99999 5999999999986 4 34 5889999999999999999999999999887553
No 15
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.28 E-value=2.8e-11 Score=82.32 Aligned_cols=67 Identities=21% Similarity=0.364 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhhcC-CC-CcceeHHHHHHHHHh-----cCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHh
Q 037528 19 ERRLFNQFFQSMDK-DG-NRRVSYREFSDFMSL-----QAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYIL 85 (158)
Q Consensus 19 ~~~~~~~~F~~~D~-d~-dG~Is~~El~~~l~~-----lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~ 85 (158)
....++++|..||. |+ +|.|+..|++.+|+. +|. ++..+++.+++.+|.+++|.|+|+||+.++..+
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 35678999999997 97 699999999999986 466 789999999999999999999999999888643
No 16
>PTZ00184 calmodulin; Provisional
Probab=99.27 E-value=5e-11 Score=85.66 Aligned_cols=97 Identities=25% Similarity=0.396 Sum_probs=80.5
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcCCCcc
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSRRPIC 92 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~~~c 92 (158)
++++++++.++..|..+|.+++|.|+.+||..++..++. ++...+..+++.+|.+++|.|+|++|+.++.........
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~- 82 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDS- 82 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcH-
Confidence 578889999999999999999999999999999999988 788899999999999999999999999988765432211
Q ss_pred hhhHHHHHhhhhhcccccccCCcchh
Q 037528 93 GRCRIFITNEYFACMRCFETGSAAYS 118 (158)
Q Consensus 93 ~~c~~~l~~~~~~~~~cfd~~~~~~~ 118 (158)
...+ ..+|+-+|.+++|+.
T Consensus 83 ---~~~~----~~~F~~~D~~~~g~i 101 (149)
T PTZ00184 83 ---EEEI----KEAFKVFDRDGNGFI 101 (149)
T ss_pred ---HHHH----HHHHHhhCCCCCCeE
Confidence 2233 344688898888754
No 17
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.27 E-value=3.9e-11 Score=80.96 Aligned_cols=70 Identities=17% Similarity=0.339 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhhcC-CC-CcceeHHHHHHHHHh---cCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhh
Q 037528 17 DEERRLFNQFFQSMDK-DG-NRRVSYREFSDFMSL---QAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILK 86 (158)
Q Consensus 17 ~~~~~~~~~~F~~~D~-d~-dG~Is~~El~~~l~~---lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~ 86 (158)
++.+..+-.+|..||. +| +|+|+.+||+.++++ +|. ++++++.++++.+|.|++|.|+|+||+.++..+.
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 4456678899999998 77 899999999999973 687 8999999999999999999999999999987654
No 18
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.26 E-value=2.2e-11 Score=76.80 Aligned_cols=62 Identities=24% Similarity=0.373 Sum_probs=57.5
Q ss_pred HHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhh
Q 037528 24 NQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILK 86 (158)
Q Consensus 24 ~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~ 86 (158)
+++|+.+|++++|.|+.+|+..+++.+|. +..+++.+++.+|.+++|.|+|+||+.++..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~-~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL-PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 57899999999999999999999999987 888999999999999999999999999887653
No 19
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.25 E-value=3.3e-11 Score=80.73 Aligned_cols=70 Identities=17% Similarity=0.336 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhhhcC--CCCcceeHHHHHHHHHh-cCC-C----CHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhh
Q 037528 17 DEERRLFNQFFQSMDK--DGNRRVSYREFSDFMSL-QAH-D----ENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILK 86 (158)
Q Consensus 17 ~~~~~~~~~~F~~~D~--d~dG~Is~~El~~~l~~-lg~-~----~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~ 86 (158)
+++++.++++|..||+ +++|.|+.+|+..+++. +|. + +..++..++..+|.+++|.|+|++|+.++....
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 5678889999999999 89999999999999986 554 3 588999999999999999999999999887653
No 20
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=99.13 E-value=1.9e-10 Score=87.59 Aligned_cols=81 Identities=15% Similarity=0.259 Sum_probs=74.5
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCC-CHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcCCCc
Q 037528 13 NSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHD-ENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSRRPI 91 (158)
Q Consensus 13 ~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~-~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~~~ 91 (158)
+.++..+++.+..+|+.||.+.||+|+..||+.+|.++|.| |.--++.|++..|.|.+|+|+|-||+-++....+|...
T Consensus 91 ~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~ 170 (244)
T KOG0041|consen 91 SEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQ 170 (244)
T ss_pred hHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccc
Confidence 35677899999999999999999999999999999999994 77788999999999999999999999999999988876
Q ss_pred ch
Q 037528 92 CG 93 (158)
Q Consensus 92 c~ 93 (158)
|+
T Consensus 171 ~d 172 (244)
T KOG0041|consen 171 ED 172 (244)
T ss_pred cc
Confidence 65
No 21
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.12 E-value=5.1e-10 Score=75.64 Aligned_cols=70 Identities=29% Similarity=0.445 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhh-hcCCCCc-ceeHHHHHHHHHhc-----CC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhh
Q 037528 17 DEERRLFNQFFQS-MDKDGNR-RVSYREFSDFMSLQ-----AH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILK 86 (158)
Q Consensus 17 ~~~~~~~~~~F~~-~D~d~dG-~Is~~El~~~l~~l-----g~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~ 86 (158)
+..+..+..+|+. +|++|+| +|+.+||+.++... +. .++.++..+++.+|.|+||.|+|+||+.++..+.
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 3456778899999 7788986 99999999999875 22 3678899999999999999999999999887653
No 22
>PLN02964 phosphatidylserine decarboxylase
Probab=99.05 E-value=1e-09 Score=96.92 Aligned_cols=94 Identities=13% Similarity=0.127 Sum_probs=76.8
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcC-C-CCHHH---HHHHHHHhCCCCCCceeHHHHHHHHHHhhc
Q 037528 13 NSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQA-H-DENMR---TRDFFNQLDIDGSGRLDFKEVLTLYYILKS 87 (158)
Q Consensus 13 ~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg-~-~~~~~---~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~ 87 (158)
..++..|+++++++|..+|+|++|.| +..+++.+| . |++.+ ++.+|+.+|.+++|.|+|+||+.++..+..
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~ 210 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGN 210 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc
Confidence 45778899999999999999999996 889999999 5 77776 799999999999999999999999986543
Q ss_pred CCCcchhhHHHHHhhhhhcccccccCCcchhh
Q 037528 88 RRPICGRCRIFITNEYFACMRCFETGSAAYSI 119 (158)
Q Consensus 88 ~~~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~ 119 (158)
..+ ++-+..+ |+.||.+++|++.
T Consensus 211 ~~s-----eEEL~ea----Fk~fDkDgdG~Is 233 (644)
T PLN02964 211 LVA-----ANKKEEL----FKAADLNGDGVVT 233 (644)
T ss_pred CCC-----HHHHHHH----HHHhCCCCCCcCC
Confidence 222 3334444 5999998887653
No 23
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.03 E-value=1.7e-09 Score=65.57 Aligned_cols=60 Identities=27% Similarity=0.503 Sum_probs=55.6
Q ss_pred HHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 037528 23 FNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLY 82 (158)
Q Consensus 23 ~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~ 82 (158)
+..+|..+|.+++|.|+.+|+..+++.++. ++...+..++..+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 567899999999999999999999999988 788999999999999999999999998764
No 24
>PTZ00183 centrin; Provisional
Probab=98.97 E-value=5.4e-09 Score=76.00 Aligned_cols=63 Identities=13% Similarity=0.259 Sum_probs=53.7
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYY 83 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~ 83 (158)
..++.+|+.+|++++|.|+..||..++..+|. ++..++..++..+|.+++|.|+|++|+.++.
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 45778888899999999999999988888877 6888888889888888888999999988775
No 25
>PTZ00184 calmodulin; Provisional
Probab=98.97 E-value=6.4e-09 Score=74.62 Aligned_cols=63 Identities=21% Similarity=0.456 Sum_probs=55.5
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYY 83 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~ 83 (158)
..+..+|+.+|.+++|.|+..|+..++...|. ++..++..++..+|.+++|.|+|+||+.++.
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 45778899999999999999999999998887 7888899999999999999999999988764
No 26
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.97 E-value=4.4e-09 Score=64.02 Aligned_cols=51 Identities=20% Similarity=0.389 Sum_probs=46.5
Q ss_pred CCcceeHHHHHHHHHhcCC--CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 34 GNRRVSYREFSDFMSLQAH--DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 34 ~dG~Is~~El~~~l~~lg~--~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
.+|.|+.+||+.+|..+|. +++.++..+|..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 3799999999999988875 58999999999999999999999999998864
No 27
>PF14658 EF-hand_9: EF-hand domain
Probab=98.95 E-value=4.4e-09 Score=66.91 Aligned_cols=59 Identities=22% Similarity=0.440 Sum_probs=55.7
Q ss_pred HHhhhcCCCCcceeHHHHHHHHHhcCC--CCHHHHHHHHHHhCCCCC-CceeHHHHHHHHHH
Q 037528 26 FFQSMDKDGNRRVSYREFSDFMSLQAH--DENMRTRDFFNQLDIDGS-GRLDFKEVLTLYYI 84 (158)
Q Consensus 26 ~F~~~D~d~dG~Is~~El~~~l~~lg~--~~~~~~~~~~~~lD~d~d-G~IsfeEFl~l~~~ 84 (158)
+|..+|.++.|.|...++..+|+..+. |++.+++.+.+++|+++. |.|+|+.|+.+|..
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 699999999999999999999999976 899999999999999988 99999999999875
No 28
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.92 E-value=6.2e-09 Score=70.06 Aligned_cols=68 Identities=18% Similarity=0.292 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhhcCC--CCcceeHHHHHHHHH-hcCC-CC----HHHHHHHHHHhCCCCCCceeHHHHHHHHHHh
Q 037528 18 EERRLFNQFFQSMDKD--GNRRVSYREFSDFMS-LQAH-DE----NMRTRDFFNQLDIDGSGRLDFKEVLTLYYIL 85 (158)
Q Consensus 18 ~~~~~~~~~F~~~D~d--~dG~Is~~El~~~l~-~lg~-~~----~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~ 85 (158)
..+..+..+|+.|+.. .+|.|+.+||+.+|. .+|. ++ +.++..+|+.+|.+++|.|+|+||+.++..+
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4456788899999965 479999999999997 5565 56 8999999999999999999999999998765
No 29
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.92 E-value=5.4e-09 Score=73.99 Aligned_cols=64 Identities=16% Similarity=0.271 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 037528 16 TDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLY 82 (158)
Q Consensus 16 s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~ 82 (158)
.+..+..+..+|..+|.|+||.|+.+|+..+. ++ +.+..+..+|..+|.|+||.||++||...+
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~-~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD-PNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc-chHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 35567789999999999999999999999876 22 467788999999999999999999999988
No 30
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=1e-08 Score=75.61 Aligned_cols=66 Identities=15% Similarity=0.277 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 19 ERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 19 ~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
...+++.+|+.+|.|++|.|++.+|+.+...+|- ++.++++.|+.++|.+++|.|+-+||+.++..
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 5667899999999999999999999999999998 89999999999999999999999999998753
No 31
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.88 E-value=1.3e-08 Score=77.53 Aligned_cols=79 Identities=18% Similarity=0.384 Sum_probs=60.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhc-CC-CC--HHH----HHHHHHHhCCCCCCcee
Q 037528 3 ALRKVALAYYNSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQ-AH-DE--NMR----TRDFFNQLDIDGSGRLD 74 (158)
Q Consensus 3 el~k~~~~~~~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~l-g~-~~--~~~----~~~~~~~lD~d~dG~Is 74 (158)
+|.+....+.+..+.+ .+++-+|+.||.+++|.|+.+|+..++..+ |. .+ .+. ++.++.++|.++||.|+
T Consensus 88 ~Fv~~ls~f~~~~~~~--~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~Is 165 (187)
T KOG0034|consen 88 EFVRLLSVFSPKASKR--EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKIS 165 (187)
T ss_pred HHHHHHhhhcCCccHH--HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCc
Confidence 4445444444444444 456679999999999999999999999987 33 34 333 46688999999999999
Q ss_pred HHHHHHHHH
Q 037528 75 FKEVLTLYY 83 (158)
Q Consensus 75 feEFl~l~~ 83 (158)
|+||..++.
T Consensus 166 feEf~~~v~ 174 (187)
T KOG0034|consen 166 FEEFCKVVE 174 (187)
T ss_pred HHHHHHHHH
Confidence 999998875
No 32
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.86 E-value=1.3e-08 Score=78.43 Aligned_cols=68 Identities=16% Similarity=0.273 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhh
Q 037528 19 ERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILK 86 (158)
Q Consensus 19 ~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~ 86 (158)
-++.|+.+|+.+|+|+.|.|+..||+.+|..+|+ ++++-++.+++.+|..++|.|.|++|+.....+.
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH
Confidence 3677899999999999999999999999999999 9999999999999998899999999999877654
No 33
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.74 E-value=4.7e-08 Score=74.80 Aligned_cols=84 Identities=20% Similarity=0.404 Sum_probs=68.2
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHH
Q 037528 2 EALRKVALAYYNSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLT 80 (158)
Q Consensus 2 ~el~k~~~~~~~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~ 80 (158)
++++.+....++..++.... ..+|+.+|.|+||.|+..||..++...-. ..++.+++.|+.+|.|++|.|+++|++.
T Consensus 47 ~~F~~i~~~~fp~gd~~~y~--~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~ 124 (193)
T KOG0044|consen 47 EEFREIYASFFPDGDASKYA--ELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLK 124 (193)
T ss_pred HHHHHHHHHHCCCCCHHHHH--HHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHH
Confidence 45677766666666666554 44999999999999999999888877644 4677788999999999999999999999
Q ss_pred HHHHhhc
Q 037528 81 LYYILKS 87 (158)
Q Consensus 81 l~~~~~~ 87 (158)
++..+..
T Consensus 125 iv~~i~~ 131 (193)
T KOG0044|consen 125 IVQAIYQ 131 (193)
T ss_pred HHHHHHH
Confidence 8877653
No 34
>PLN02964 phosphatidylserine decarboxylase
Probab=98.73 E-value=8.6e-08 Score=84.87 Aligned_cols=74 Identities=20% Similarity=0.429 Sum_probs=65.9
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhc
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKS 87 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~ 87 (158)
..++.+...+.++|+.+|.|++|.|+.+||..++..++. .+++++.++|+.+|.|++|.|+++||..++.....
T Consensus 172 ~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~ 246 (644)
T PLN02964 172 DPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQQE 246 (644)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhccc
Confidence 345566667899999999999999999999999999887 78999999999999999999999999999887543
No 35
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.72 E-value=8.8e-08 Score=66.53 Aligned_cols=71 Identities=25% Similarity=0.415 Sum_probs=61.9
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHh
Q 037528 13 NSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYIL 85 (158)
Q Consensus 13 ~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~ 85 (158)
+.+++++++.+..+|+..|. ++|.|+-++...++...|+ +.+.+..++...|.+++|.++++||+..+.-+
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L-~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGL-PRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTS-SHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCC-CHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 45678899999999999995 6899999999999999998 88999999999999999999999999977654
No 36
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.71 E-value=5e-08 Score=75.23 Aligned_cols=88 Identities=24% Similarity=0.321 Sum_probs=75.8
Q ss_pred HHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC--CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcCCCcchhhHH
Q 037528 20 RRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH--DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSRRPICGRCRI 97 (158)
Q Consensus 20 ~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~--~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~~~c~~c~~ 97 (158)
...+...|...|+|+.|.|+.+|++.+|.+... ...+.++-|+..+|.+.+|+|+|+||..++..++.++
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr-------- 127 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWR-------- 127 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHH--------
Confidence 446888999999999999999999999997766 4888999999999999999999999999999888775
Q ss_pred HHHhhhhhcccccccCCcchhhhHh
Q 037528 98 FITNEYFACMRCFETGSAAYSICLE 122 (158)
Q Consensus 98 ~l~~~~~~~~~cfd~~~~~~~~c~~ 122 (158)
.+ |+=||+|+||.+.-.+
T Consensus 128 ---~v----F~~~D~D~SG~I~~sE 145 (221)
T KOG0037|consen 128 ---NV----FRTYDRDRSGTIDSSE 145 (221)
T ss_pred ---HH----HHhcccCCCCcccHHH
Confidence 22 4778999887765443
No 37
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.62 E-value=1.2e-07 Score=72.48 Aligned_cols=96 Identities=14% Similarity=0.204 Sum_probs=78.2
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-C-CHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcCCC
Q 037528 13 NSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-D-ENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSRRP 90 (158)
Q Consensus 13 ~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~-~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~~ 90 (158)
+.+++.++..+.+-|.. .-..|.++.++++.+++.+.- . +....+.+|+.+|.|++|.|+|.||+..+.....|++
T Consensus 21 t~f~~~ei~~~Yr~Fk~--~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~ 98 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKN--ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTL 98 (193)
T ss_pred cCCCHHHHHHHHHHhcc--cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcH
Confidence 46677777666666665 334789999999999999864 3 5566788999999999999999999999999999986
Q ss_pred cchhhHHHHHhhhhhcccccccCCcchhh
Q 037528 91 ICGRCRIFITNEYFACMRCFETGSAAYSI 119 (158)
Q Consensus 91 ~c~~c~~~l~~~~~~~~~cfd~~~~~~~~ 119 (158)
++-+..+ |+.+|.+++|++.
T Consensus 99 -----eekl~w~----F~lyD~dgdG~It 118 (193)
T KOG0044|consen 99 -----EEKLKWA----FRLYDLDGDGYIT 118 (193)
T ss_pred -----HHHhhhh----heeecCCCCceEc
Confidence 6667766 5999999999753
No 38
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.62 E-value=3.4e-07 Score=61.99 Aligned_cols=68 Identities=13% Similarity=0.224 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhhcCCCCcceeHHHHHHHHHh-cC----C-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhh
Q 037528 18 EERRLFNQFFQSMDKDGNRRVSYREFSDFMSL-QA----H-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILK 86 (158)
Q Consensus 18 ~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~-lg----~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~ 86 (158)
..+..+..+|..|-. ..+.++..||+.+|.+ ++ . -.+..++++++.+|.|+||.|+|+||+.++..+.
T Consensus 5 ~ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 5 HSMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 345667789999984 4569999999999964 32 1 2577899999999999999999999999997663
No 39
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.53 E-value=1.5e-07 Score=50.52 Aligned_cols=27 Identities=30% Similarity=0.765 Sum_probs=18.2
Q ss_pred HHHHHhhhcCCCCcceeHHHHHHHHHh
Q 037528 23 FNQFFQSMDKDGNRRVSYREFSDFMSL 49 (158)
Q Consensus 23 ~~~~F~~~D~d~dG~Is~~El~~~l~~ 49 (158)
++++|+.+|+|+||+|+.+||..++++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 456677777777777777777666654
No 40
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.41 E-value=1.5e-06 Score=62.92 Aligned_cols=66 Identities=12% Similarity=0.231 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 037528 16 TDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLY 82 (158)
Q Consensus 16 s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~ 82 (158)
..-..+.+-+..+.||++++|.|...||+.+|..+|. ++++++..++.. -.|.+|.|+|+.|+..+
T Consensus 83 ~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag-~eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 83 DQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAG-QEDSNGCINYEAFVKHI 149 (152)
T ss_pred ccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcc-ccccCCcCcHHHHHHHH
Confidence 3334566888899999999999999999999999999 999999999865 34678999999998755
No 41
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.41 E-value=1.5e-06 Score=63.96 Aligned_cols=63 Identities=13% Similarity=0.353 Sum_probs=59.5
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYY 83 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~ 83 (158)
+.+..+|+.||.+++|.|..+.++++|...|- .++++++.+++..-.+..|.|+|.+|..++.
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 45788999999999999999999999999998 8999999999999999999999999998876
No 42
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.38 E-value=5.8e-07 Score=48.68 Aligned_cols=30 Identities=20% Similarity=0.445 Sum_probs=25.9
Q ss_pred HHHHHHhhhcCCCCcceeHHHHHHHHH-hcC
Q 037528 22 LFNQFFQSMDKDGNRRVSYREFSDFMS-LQA 51 (158)
Q Consensus 22 ~~~~~F~~~D~d~dG~Is~~El~~~l~-~lg 51 (158)
+++.+|+.+|+|++|+|+.+||..+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467899999999999999999999998 676
No 43
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.38 E-value=1.6e-06 Score=74.44 Aligned_cols=77 Identities=23% Similarity=0.405 Sum_probs=69.1
Q ss_pred HhccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCC----CHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhh
Q 037528 11 YYNSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHD----ENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILK 86 (158)
Q Consensus 11 ~~~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~----~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~ 86 (158)
..++++.+++..+++.|...| |++|+|+..|+..++.+.+.+ ..++++.++...+.|.+|+|+|++|+.++..++
T Consensus 9 ~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 9 LQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred hcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 346789999999999999999 999999999999999988774 478899999999999999999999999887766
Q ss_pred cC
Q 037528 87 SR 88 (158)
Q Consensus 87 ~~ 88 (158)
+.
T Consensus 88 s~ 89 (627)
T KOG0046|consen 88 SK 89 (627)
T ss_pred hh
Confidence 53
No 44
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.37 E-value=8.1e-07 Score=47.64 Aligned_cols=28 Identities=29% Similarity=0.625 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 57 RTRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 57 ~~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
+++++|+.+|+|+||.|+++||..++..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5788999999999999999999999875
No 45
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.26 E-value=4.4e-06 Score=69.97 Aligned_cols=65 Identities=18% Similarity=0.334 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 037528 19 ERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYY 83 (158)
Q Consensus 19 ~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~ 83 (158)
...++.++|+.+|.+.||.|+.+|+...++.+|. .+.+++.++++.+|+++++.|+++|+...+.
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 3456788999999999999999999999999999 8999999999999999999999999987654
No 46
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.23 E-value=6.8e-06 Score=68.85 Aligned_cols=72 Identities=15% Similarity=0.283 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC--CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHh
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH--DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYIL 85 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~--~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~ 85 (158)
...++...+++..|+.+|.+++|.|+..++.+.+.++.. +.....+.++...|.|.||+++|+||..++...
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~ 80 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK 80 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh
Confidence 345666678999999999999999999999999999987 455667889999999999999999999988754
No 47
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.20 E-value=7.4e-06 Score=59.97 Aligned_cols=61 Identities=18% Similarity=0.333 Sum_probs=52.4
Q ss_pred HHHHhhhcCCCCcceeHHHHHHHHHhcCC--CCHHHH----HHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 24 NQFFQSMDKDGNRRVSYREFSDFMSLQAH--DENMRT----RDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 24 ~~~F~~~D~d~dG~Is~~El~~~l~~lg~--~~~~~~----~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
.=+|+.||-|+|+.|...++...+.++.. ++++++ ++++.+.|.|+||+|+|.||-.++.+
T Consensus 111 ~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 111 KYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred hheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 34899999999999999999999998844 566664 66788999999999999999988763
No 48
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.13 E-value=1.1e-05 Score=67.92 Aligned_cols=57 Identities=18% Similarity=0.300 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHh
Q 037528 17 DEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYIL 85 (158)
Q Consensus 17 ~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~ 85 (158)
+.....+..+|+.+|.++||.|+.+||.. ++.+|..+|.|+||.|+++||...+...
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 34456788999999999999999999842 3679999999999999999999988654
No 49
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.12 E-value=1.5e-05 Score=75.22 Aligned_cols=88 Identities=15% Similarity=0.301 Sum_probs=74.2
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC--C------CHHHHHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 13 NSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH--D------ENMRTRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 13 ~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~--~------~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
+-.+++++.++.-+|+.||++.+|.++-.+|+.+|+++|+ | ++.+.+.++..+|++.+|.|+..+|+.+|..
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 4578999999999999999999999999999999999998 4 3347899999999999999999999999977
Q ss_pred hhcCCCcchhhHHHHHhhh
Q 037528 85 LKSRRPICGRCRIFITNEY 103 (158)
Q Consensus 85 ~~~~~~~c~~c~~~l~~~~ 103 (158)
..+..+.- .+-|+++|
T Consensus 2325 ~ETeNI~s---~~eIE~Af 2340 (2399)
T KOG0040|consen 2325 KETENILS---SEEIEDAF 2340 (2399)
T ss_pred cccccccc---hHHHHHHH
Confidence 66554332 33566665
No 50
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.06 E-value=1.1e-05 Score=68.25 Aligned_cols=68 Identities=18% Similarity=0.394 Sum_probs=58.8
Q ss_pred HHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-----CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhc
Q 037528 20 RRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-----DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKS 87 (158)
Q Consensus 20 ~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-----~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~ 87 (158)
...+..+|+.+|.|+.|.|+.+||+.+...++- .+.+++.++-..+|.|+||.|++.||+..+.-.-.
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDR 618 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcc
Confidence 345677999999999999999999999886632 48899999999999999999999999999876543
No 51
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.04 E-value=2.8e-05 Score=46.95 Aligned_cols=49 Identities=24% Similarity=0.446 Sum_probs=41.2
Q ss_pred ceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHh
Q 037528 37 RVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYIL 85 (158)
Q Consensus 37 ~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~ 85 (158)
+++..|++.+|+.+.+ +++..+..+|+..|.+++|+++.+||...+..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 3688999999999999 899999999999999999999999999988654
No 52
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.04 E-value=3e-05 Score=59.16 Aligned_cols=96 Identities=18% Similarity=0.352 Sum_probs=74.3
Q ss_pred cCCHHHHHHHHHHHhhhcCC-CCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCc-eeHHHHHHHHHHhhcCCCc
Q 037528 14 SGTDEERRLFNQFFQSMDKD-GNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGR-LDFKEVLTLYYILKSRRPI 91 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d-~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~-IsfeEFl~l~~~~~~~~~~ 91 (158)
.++..++..+...|..+|.+ ++|.|+.+||..+....-. .....++..++.+++|. |+|++|+..+.........
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~N---p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~ 102 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALN---PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASK 102 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcC---cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccH
Confidence 38889999999999999999 9999999999999843222 23466888888888887 9999999999887765421
Q ss_pred chhhHHHHHhhhhhcccccccCCcchhhh
Q 037528 92 CGRCRIFITNEYFACMRCFETGSAAYSIC 120 (158)
Q Consensus 92 c~~c~~~l~~~~~~~~~cfd~~~~~~~~c 120 (158)
..=+.= +|+.+|.+++|++..
T Consensus 103 ----~~Kl~f----aF~vYD~~~~G~I~r 123 (187)
T KOG0034|consen 103 ----REKLRF----AFRVYDLDGDGFISR 123 (187)
T ss_pred ----HHHHHH----HHHHhcCCCCCcCcH
Confidence 111222 469999999998654
No 53
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.03 E-value=7.8e-06 Score=42.23 Aligned_cols=23 Identities=35% Similarity=0.785 Sum_probs=16.7
Q ss_pred HHHHhhhcCCCCcceeHHHHHHH
Q 037528 24 NQFFQSMDKDGNRRVSYREFSDF 46 (158)
Q Consensus 24 ~~~F~~~D~d~dG~Is~~El~~~ 46 (158)
+++|+.+|.|+||.|+.+|+.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45677777777777777777764
No 54
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.69 E-value=8e-05 Score=38.39 Aligned_cols=25 Identities=40% Similarity=0.769 Sum_probs=22.1
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHH
Q 037528 58 TRDFFNQLDIDGSGRLDFKEVLTLY 82 (158)
Q Consensus 58 ~~~~~~~lD~d~dG~IsfeEFl~l~ 82 (158)
++++|..+|.|+||.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998753
No 55
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.68 E-value=9.8e-05 Score=46.17 Aligned_cols=56 Identities=18% Similarity=0.171 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHHHhhcCCCcchhhHHHHHhhhhhcccccccCCcchh
Q 037528 58 TRDFFNQLDIDGSGRLDFKEVLTLYYILKSRRPICGRCRIFITNEYFACMRCFETGSAAYS 118 (158)
Q Consensus 58 ~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~~~c~~c~~~l~~~~~~~~~cfd~~~~~~~ 118 (158)
++++|+.+|.+++|.|+.+||..++..+....+ ...+.......++.+|.+++|.+
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~-----~~~~~~~~~~~~~~~D~d~dG~i 57 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMS-----DEESDEMIDQIFREFDTDGDGRI 57 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST-----HHHHHHHHHHHHHHHTTTSSSSE
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHhCCCCcCCC
Confidence 678999999999999999999999988765432 33344444444699999988764
No 56
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.67 E-value=2.8e-05 Score=54.68 Aligned_cols=61 Identities=16% Similarity=0.304 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q 037528 19 ERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLT 80 (158)
Q Consensus 19 ~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~ 80 (158)
....+.-.|..+|.|+||.|+..|+..+...+ .+.+.=+..+++..|.|+||.|+..|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 45566778999999999999999999886644 23555578899999999999999999864
No 57
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.00011 Score=59.84 Aligned_cols=67 Identities=19% Similarity=0.443 Sum_probs=53.4
Q ss_pred HHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC--CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhh
Q 037528 20 RRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH--DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILK 86 (158)
Q Consensus 20 ~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~--~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~ 86 (158)
+..-++.|+..|.|+||.++++||..+|-=--. ...--+...+...|+|+||.|+++||+.=++...
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 445678999999999999999999998642212 2344567788899999999999999999776654
No 58
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.00024 Score=57.98 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHh
Q 037528 16 TDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYIL 85 (158)
Q Consensus 16 s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~ 85 (158)
+.+....+..++..+|.++||.|+..|++.++...-. ....++.+-+...|.+.||.|+|+|++..++..
T Consensus 72 ~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~ 142 (325)
T KOG4223|consen 72 PEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGR 142 (325)
T ss_pred cchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhc
Confidence 3445677889999999999999999999999876544 345556677888999999999999999988864
No 59
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.47 E-value=0.00044 Score=41.60 Aligned_cols=45 Identities=27% Similarity=0.479 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhcc-CCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHh
Q 037528 2 EALRKVALAYYNS-GTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSL 49 (158)
Q Consensus 2 ~el~k~~~~~~~~-~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~ 49 (158)
++|+.+....-.. +++++ +..+|..+|.+++|.|+.+||..++..
T Consensus 8 ~~~~~~l~~~g~~~~s~~e---~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 8 EEFRRALSKLGIKDLSEEE---VDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHTTSSSSCHHH---HHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHH---HHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4666666333234 66666 677899999999999999999998864
No 60
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.00046 Score=48.66 Aligned_cols=67 Identities=21% Similarity=0.328 Sum_probs=51.6
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHh------cCC-----CCHHHHHH----HHHHhCCCCCCceeHHH
Q 037528 13 NSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSL------QAH-----DENMRTRD----FFNQLDIDGSGRLDFKE 77 (158)
Q Consensus 13 ~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~------lg~-----~~~~~~~~----~~~~lD~d~dG~IsfeE 77 (158)
.+++++|.+-- .|++.|.|++|.|+--|+.+++.- .|. +++.++.. +++..|.|+||.|+|-|
T Consensus 61 a~mtpeqlqfH--YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgE 138 (144)
T KOG4065|consen 61 AKMTPEQLQFH--YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGE 138 (144)
T ss_pred hhCCHHHHhhh--hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHH
Confidence 46778776544 899999999999999999988873 233 25666544 56667899999999999
Q ss_pred HHHH
Q 037528 78 VLTL 81 (158)
Q Consensus 78 Fl~l 81 (158)
|+..
T Consensus 139 flK~ 142 (144)
T KOG4065|consen 139 FLKR 142 (144)
T ss_pred HHhh
Confidence 9863
No 61
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.34 E-value=0.00048 Score=36.97 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHH
Q 037528 57 RTRDFFNQLDIDGSGRLDFKEVLTLYY 83 (158)
Q Consensus 57 ~~~~~~~~lD~d~dG~IsfeEFl~l~~ 83 (158)
+++.+|+.+|.|++|.|+++||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 367899999999999999999999887
No 62
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.12 E-value=0.00054 Score=54.35 Aligned_cols=68 Identities=21% Similarity=0.390 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC--C--CHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhh
Q 037528 19 ERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH--D--ENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILK 86 (158)
Q Consensus 19 ~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~--~--~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~ 86 (158)
..+.++.+|...|.+.||+|+..|+++.++.--- . ...+-+-.|...|+|+||.|+|+||..-+....
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlask 170 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASK 170 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhc
Confidence 3567899999999999999999999998765311 1 233445578889999999999999988766543
No 63
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.09 E-value=0.00074 Score=33.87 Aligned_cols=27 Identities=30% Similarity=0.759 Sum_probs=16.6
Q ss_pred HHHHHhhhcCCCCcceeHHHHHHHHHh
Q 037528 23 FNQFFQSMDKDGNRRVSYREFSDFMSL 49 (158)
Q Consensus 23 ~~~~F~~~D~d~dG~Is~~El~~~l~~ 49 (158)
++.+|+.+|.+++|.|+..|+..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 345666666666666666666666543
No 64
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.78 E-value=0.0041 Score=54.51 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=71.3
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcCCC
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSRRP 90 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~~ 90 (158)
.++++++...+..|..+|.|..|+++..++..+|+..+. .+++.+.+++.+.|.+-+|.++..||..++..++.|.+
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~~ 663 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGCT 663 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCCh
Confidence 467889999999999999999999999999999999885 78999999999999999999999999999999998874
No 65
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.67 E-value=0.003 Score=31.52 Aligned_cols=27 Identities=33% Similarity=0.637 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 58 TRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 58 ~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
++.+|+.+|.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567999999999999999999988754
No 66
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.50 E-value=0.0065 Score=40.90 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=34.2
Q ss_pred HHHHHHHH-HhccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcC
Q 037528 3 ALRKVALA-YYNSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQA 51 (158)
Q Consensus 3 el~k~~~~-~~~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg 51 (158)
+|+..... +-+.+++. ..+.++++.+|.|+||.|+.+||..++..+.
T Consensus 30 ELk~ll~~elg~~ls~~--~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 30 EFQELLTQQLPHLLKDV--EGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHhhhhccCH--HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 55555544 22223332 5688899999999999999999999988764
No 67
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.35 E-value=0.018 Score=37.70 Aligned_cols=62 Identities=11% Similarity=0.334 Sum_probs=50.4
Q ss_pred HHHHHHhhhcCCCCcceeHHHHHHHHHhcCC---CCHHHHHHHHHHhCCC----CCCceeHHHHHHHHHH
Q 037528 22 LFNQFFQSMDKDGNRRVSYREFSDFMSLQAH---DENMRTRDFFNQLDID----GSGRLDFKEVLTLYYI 84 (158)
Q Consensus 22 ~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~---~~~~~~~~~~~~lD~d----~dG~IsfeEFl~l~~~ 84 (158)
++..+|..+-. +.+.|+.++|..+|+.-.- .+..++..++..+.++ ..+.+++++|..++..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 36778999955 7899999999999986533 3888999999887654 4689999999998853
No 68
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.27 E-value=0.065 Score=45.99 Aligned_cols=68 Identities=22% Similarity=0.338 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhcCCCCcceeHHHHHHHHHhc---CCC-----------C-------------------------------
Q 037528 20 RRLFNQFFQSMDKDGNRRVSYREFSDFMSLQ---AHD-----------E------------------------------- 54 (158)
Q Consensus 20 ~~~~~~~F~~~D~d~dG~Is~~El~~~l~~l---g~~-----------~------------------------------- 54 (158)
...+...|+.+|.+..|+|+......++.+. |+| +
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 3457889999999999999999998888743 221 0
Q ss_pred ---HHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhc
Q 037528 55 ---NMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKS 87 (158)
Q Consensus 55 ---~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~ 87 (158)
...++.+|+.+|.|..|.|+.+||.+++.-+.+
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~s 578 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSS 578 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHh
Confidence 001245788999999999999999998877665
No 69
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=96.25 E-value=0.0011 Score=39.02 Aligned_cols=37 Identities=22% Similarity=0.674 Sum_probs=30.5
Q ss_pred cchhhHHHHHhhhhhcccccccCCcchhhhHhhhCCCCCcccc
Q 037528 91 ICGRCRIFITNEYFACMRCFETGSAAYSICLECFGDKGSLNHN 133 (158)
Q Consensus 91 ~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~~c~~~~~~~~h~ 133 (158)
.|++|+..+.|+.+.|.+|. .|++|..||... ...|+
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~-----d~dLC~~Cf~~~-~~~H~ 38 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCE-----DFDLCSSCYAKG-KKGHP 38 (46)
T ss_pred CCcCCCCCCcCCEEECCCCC-----CCcCHHHHHCcC-cCCCC
Confidence 48899999999887888777 599999999977 55563
No 70
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.21 E-value=0.015 Score=49.73 Aligned_cols=83 Identities=12% Similarity=0.255 Sum_probs=60.7
Q ss_pred HHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHH----HhCCCCCCceeHHHHHHHHHHhhcCCCcchhhHHHHH
Q 037528 25 QFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFN----QLDIDGSGRLDFKEVLTLYYILKSRRPICGRCRIFIT 100 (158)
Q Consensus 25 ~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~----~lD~d~dG~IsfeEFl~l~~~~~~~~~~c~~c~~~l~ 100 (158)
--|-.+|+|+||.|+.++|...-... .+..-++.+|. ..-...+|+++|++|+-.+.......+ ..-|+
T Consensus 282 ~kFweLD~Dhd~lidk~~L~ry~d~t--lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t-----~~Sle 354 (493)
T KOG2562|consen 282 CKFWELDTDHDGLIDKEDLKRYGDHT--LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDT-----PASLE 354 (493)
T ss_pred HHHhhhccccccccCHHHHHHHhccc--hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCC-----ccchh
Confidence 34788999999999999998763221 46777889998 344457899999999998887765431 11223
Q ss_pred hhhhhcccccccCCcchh
Q 037528 101 NEYFACMRCFETGSAAYS 118 (158)
Q Consensus 101 ~~~~~~~~cfd~~~~~~~ 118 (158)
=. |||-|-+|+|+.
T Consensus 355 Yw----FrclDld~~G~L 368 (493)
T KOG2562|consen 355 YW----FRCLDLDGDGIL 368 (493)
T ss_pred hh----eeeeeccCCCcc
Confidence 33 599999998864
No 71
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.0087 Score=54.15 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHh---hcCC
Q 037528 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYIL---KSRR 89 (158)
Q Consensus 15 ~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~---~~~~ 89 (158)
.+..+...++.+|+.+|+...|+++-..-+.+|...++ +...+..|+..-|.|+||+++-+||+-.|.-+ ++|.
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~L-pq~~LA~IW~LsDvd~DGkL~~dEfilam~liema~sGq 265 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGL-PQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEMAKSGQ 265 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCC-chhhHhhheeeeccCCCCcccHHHHHHHHHHHHHHhcCC
Confidence 34566778999999999999999999999999998888 77778889988999999999999999866543 4454
No 72
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=96.17 E-value=0.0027 Score=55.74 Aligned_cols=38 Identities=16% Similarity=0.586 Sum_probs=34.8
Q ss_pred CcchhhHHHHHhhhhhcccccccCCcchhhhH-----hhhCCC
Q 037528 90 PICGRCRIFITNEYFACMRCFETGSAAYSICL-----ECFGDK 127 (158)
Q Consensus 90 ~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~-----~c~~~~ 127 (158)
+.|+.|+.+|+|+|+||++|.|+.-|||+.|. +|-++.
T Consensus 279 TVCq~CkkLLkGL~rQGlqCkDCk~NcHkrCa~~v~~dClge~ 321 (888)
T KOG4236|consen 279 TVCQYCKKLLKGLFRQGLQCKDCKFNCHKRCAMKVPNDCLGEV 321 (888)
T ss_pred hHHHHHHHHHHHHHhcCcccccCCcchhhhhhhhcccccccce
Confidence 89999999999999999999999999999995 576655
No 73
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=96.16 E-value=0.0029 Score=55.53 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=32.1
Q ss_pred CCcchhhHHHHHhhhhhcccccccCCcchhhhHh
Q 037528 89 RPICGRCRIFITNEYFACMRCFETGSAAYSICLE 122 (158)
Q Consensus 89 ~~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~~ 122 (158)
.+|||.|+++|+|+.+||+||+.++.|-|+.|.-
T Consensus 156 PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~ 189 (888)
T KOG4236|consen 156 PTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAF 189 (888)
T ss_pred chHHHHHHHHHHHHHHccccccCCCCcHhhhhhh
Confidence 3899999999999999999999999999999964
No 74
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=95.99 E-value=0.0017 Score=37.86 Aligned_cols=32 Identities=28% Similarity=0.749 Sum_probs=27.9
Q ss_pred cchhhHHHHHhhhhhcccccccCCcchhhhHhhhCCC
Q 037528 91 ICGRCRIFITNEYFACMRCFETGSAAYSICLECFGDK 127 (158)
Q Consensus 91 ~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~~c~~~~ 127 (158)
.|++|+.-+.|.-+.|..|. .|++|..||...
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~-----d~dLC~~C~~~~ 33 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCP-----DYDLCESCEAKG 33 (43)
T ss_pred CCCCCCCcCcCCeEECCCCC-----CccchHHhhCcC
Confidence 58899998999988888877 399999999987
No 75
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=95.94 E-value=0.014 Score=39.05 Aligned_cols=47 Identities=15% Similarity=0.368 Sum_probs=33.2
Q ss_pred hHHHHHHHHH---hccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcC
Q 037528 2 EALRKVALAY---YNSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQA 51 (158)
Q Consensus 2 ~el~k~~~~~---~~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg 51 (158)
++|++..... -...+++ ++.++++.+|.|++|.|+.+||..++..+.
T Consensus 32 ~EL~~~l~~~~~lg~k~t~~---ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 32 KELKELIQKELTIGSKLQDA---EIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHhcCCCCCHH---HHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 3566655332 2334554 466678899999999999999998887654
No 76
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=95.77 E-value=0.029 Score=32.93 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=35.8
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHHHhhcCCCcchhhHHHHHhhhhhcccccccCCcch
Q 037528 58 TRDFFNQLDIDGSGRLDFKEVLTLYYILKSRRPICGRCRIFITNEYFACMRCFETGSAAY 117 (158)
Q Consensus 58 ~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~~~c~~c~~~l~~~~~~~~~cfd~~~~~~ 117 (158)
+..+|..+|.+++|.|++++|..++.......+ ...+..+ ++-+|.++++.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~-----~~~~~~~----~~~~~~~~~~~ 52 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLS-----EEEIDEM----IREVDKDGDGK 52 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCC-----HHHHHHH----HHHhCCCCCCe
Confidence 467899999999999999999999876543322 3334444 46677666554
No 77
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=0.038 Score=47.97 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=67.2
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcCC
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSRR 89 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~ 89 (158)
+++++|.+.+-.-|+..-.|-.|.|+-.--+.++.+..+ +-.++..|+..-|.+.||.++..||...|.-+..++
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSkl-pi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRk 298 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKL-PIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARK 298 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccC-chHHHHHHHhhcccCccccccHHHHHhhHhheeecc
Confidence 578999999999999999999999999999999988877 778899999999999999999999999887765543
No 78
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=95.54 E-value=0.0082 Score=51.06 Aligned_cols=58 Identities=21% Similarity=0.372 Sum_probs=49.3
Q ss_pred hcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcC
Q 037528 30 MDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSR 88 (158)
Q Consensus 30 ~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~ 88 (158)
++.+.+|.|+..|+.-++.-+.. ++...+-.|+.+|.|+||.|+.+||......+.+.
T Consensus 208 ~~lg~~GLIsfSdYiFLlTlLS~-p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ 265 (489)
T KOG2643|consen 208 YKLGESGLISFSDYIFLLTLLSI-PERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQ 265 (489)
T ss_pred EEcCCCCeeeHHHHHHHHHHHcc-CcccceeeeeeeecCCCCcccHHHHHHHHHHHHhc
Confidence 45567999999999999888877 66667778999999999999999999998776653
No 79
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=95.47 E-value=0.027 Score=37.91 Aligned_cols=32 Identities=16% Similarity=0.397 Sum_probs=27.7
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH 52 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~ 52 (158)
..+.++++.+|.|++|.|+.+||..++..+..
T Consensus 53 ~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~ 84 (93)
T cd05026 53 MLVDKIMNDLDSNKDNEVDFNEFVVLVAALTV 84 (93)
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 46788899999999999999999999887643
No 80
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=95.47 E-value=0.019 Score=38.51 Aligned_cols=31 Identities=13% Similarity=0.462 Sum_probs=26.8
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhcC
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQA 51 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg 51 (158)
..+.++++.+|.|+||.|+.+||..++..+.
T Consensus 52 ~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 52 GVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4577789999999999999999999887653
No 81
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.46 E-value=0.052 Score=32.76 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=25.3
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhc
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQ 50 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~l 50 (158)
..+..+|+..|++++|++..+|+..+++.+
T Consensus 21 ~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 21 EYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 446779999999999999999999998764
No 82
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=95.31 E-value=0.036 Score=47.27 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=24.6
Q ss_pred HHHHHHhCCCCCCceeHHHHHHHHHHhhc
Q 037528 59 RDFFNQLDIDGSGRLDFKEVLTLYYILKS 87 (158)
Q Consensus 59 ~~~~~~lD~d~dG~IsfeEFl~l~~~~~~ 87 (158)
+-+|..+|.|+||.|+.+||+.++...+.
T Consensus 428 dvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmh 456 (489)
T KOG2643|consen 428 DVVFTIFDENNDGTLSHKEFLAVMKRRMH 456 (489)
T ss_pred eeEEEEEccCCCCcccHHHHHHHHHHHhh
Confidence 44677789999999999999999987654
No 83
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.25 E-value=0.029 Score=53.90 Aligned_cols=59 Identities=17% Similarity=0.301 Sum_probs=52.6
Q ss_pred HHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 26 FFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 26 ~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
.|+.||+||.|.|+..+|.++|......+..+++-++.....|.+..++|++|+.-+..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 57889999999999999999998766579999999999999999999999999987654
No 84
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.17 E-value=0.034 Score=37.31 Aligned_cols=32 Identities=13% Similarity=0.388 Sum_probs=28.0
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH 52 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~ 52 (158)
+.+..+++.+|.+++|.|+.+||..++..+++
T Consensus 51 ~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 51 MAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 35777889999999999999999999987766
No 85
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=95.07 E-value=0.00097 Score=39.35 Aligned_cols=39 Identities=31% Similarity=0.790 Sum_probs=25.6
Q ss_pred CcchhhHH-HHHhhhhhcccccccCCcchhhhHhhhCCCCCccccC
Q 037528 90 PICGRCRI-FITNEYFACMRCFETGSAAYSICLECFGDKGSLNHNH 134 (158)
Q Consensus 90 ~~c~~c~~-~l~~~~~~~~~cfd~~~~~~~~c~~c~~~~~~~~h~~ 134 (158)
..|++|+. -+.|+-+.|..|. .|++|..||... +..|+|
T Consensus 5 ~~C~~C~~~~i~g~Ry~C~~C~-----d~dLC~~C~~~g-~~~~~H 44 (46)
T PF00569_consen 5 YTCDGCGTDPIIGVRYHCLVCP-----DYDLCEDCFSKG-RHSHNH 44 (46)
T ss_dssp CE-SSS-SSSEESSEEEESSSS-----S-EEEHHHHHH---H-SSS
T ss_pred eECcCCCCCcCcCCeEECCCCC-----CCchhhHHHhCc-CCCCCc
Confidence 46888887 6778877777775 499999999976 666655
No 86
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=94.96 E-value=0.0063 Score=36.28 Aligned_cols=32 Identities=22% Similarity=0.733 Sum_probs=26.7
Q ss_pred cchhhHHHHHhhhhhcccccccCCcchhhhHhhhCCC
Q 037528 91 ICGRCRIFITNEYFACMRCFETGSAAYSICLECFGDK 127 (158)
Q Consensus 91 ~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~~c~~~~ 127 (158)
.|++|+..+.+.-..|.+|+| |++|..||...
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d-----~DlC~~Cf~~g 33 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTD-----MDLCKTCFLGG 33 (48)
T ss_pred CCCCCCCcCCCceEECCCCCC-----chhHHHHHhCC
Confidence 489999888887777777773 99999999966
No 87
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=94.91 E-value=0.071 Score=32.67 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=34.6
Q ss_pred HHHHHHhCCCCCCceeHHHHHHHHHHhhcCCCcchhhHHHHHhhhhhcccccccCCcch
Q 037528 59 RDFFNQLDIDGSGRLDFKEVLTLYYILKSRRPICGRCRIFITNEYFACMRCFETGSAAY 117 (158)
Q Consensus 59 ~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~~~c~~c~~~l~~~~~~~~~cfd~~~~~~ 117 (158)
+++|+.+|.+++|.|+.+|+..++... +-+ .+.+..++ +.+|.++++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~--g~~-----~~~~~~i~----~~~d~~~~g~ 49 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS--GLP-----RSVLAQIW----DLADTDKDGK 49 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc--CCC-----HHHHHHHH----HHhcCCCCCc
Confidence 468899999999999999999988754 221 34455553 6677766554
No 88
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=94.89 E-value=0.085 Score=35.23 Aligned_cols=30 Identities=20% Similarity=0.649 Sum_probs=25.4
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhc
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQ 50 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~l 50 (158)
.++.++++.+|.|++|.|+.+||..++..+
T Consensus 51 ~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 51 EVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 347777889999999999999999887654
No 89
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=94.81 E-value=0.0061 Score=35.52 Aligned_cols=39 Identities=28% Similarity=0.703 Sum_probs=29.3
Q ss_pred CcchhhHHHHHhhhhhcccccccCCcchhhhHhhhCCCCCccccC
Q 037528 90 PICGRCRIFITNEYFACMRCFETGSAAYSICLECFGDKGSLNHNH 134 (158)
Q Consensus 90 ~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~~c~~~~~~~~h~~ 134 (158)
..|+.|+.-+.|+-+.|..|. .|++|..||... +..++|
T Consensus 5 ~~C~~C~~~i~g~ry~C~~C~-----d~dlC~~Cf~~~-~~~~~h 43 (44)
T smart00291 5 YSCDTCGKPIVGVRYHCLVCP-----DYDLCQSCFAKG-SAGGEH 43 (44)
T ss_pred cCCCCCCCCCcCCEEECCCCC-----CccchHHHHhCc-CcCCCC
Confidence 468889987788876666664 499999999977 444443
No 90
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.60 E-value=0.43 Score=35.21 Aligned_cols=66 Identities=14% Similarity=0.243 Sum_probs=50.2
Q ss_pred HHHHHhhhcCCCCcceeHHHHHHHHHhcCC----CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcC
Q 037528 23 FNQFFQSMDKDGNRRVSYREFSDFMSLQAH----DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSR 88 (158)
Q Consensus 23 ~~~~F~~~D~d~dG~Is~~El~~~l~~lg~----~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~ 88 (158)
+...|..|...+...++...|..+++..++ ++...+.-+|..+-..+..+|+|++|+..+..+...
T Consensus 4 ~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~ 73 (154)
T PF05517_consen 4 VFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEK 73 (154)
T ss_dssp HHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHH
Confidence 344555556667778999999999999877 378889999999766667789999999998876653
No 91
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=94.54 E-value=0.098 Score=34.79 Aligned_cols=31 Identities=16% Similarity=0.460 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhcCCCCcceeHHHHHHHHHhc
Q 037528 20 RRLFNQFFQSMDKDGNRRVSYREFSDFMSLQ 50 (158)
Q Consensus 20 ~~~~~~~F~~~D~d~dG~Is~~El~~~l~~l 50 (158)
...+..+|+.+|.+++|.|+.+||..++..+
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3457788999999999999999999988765
No 92
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=94.42 E-value=0.29 Score=42.67 Aligned_cols=97 Identities=14% Similarity=0.185 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhc-CC-CCHHHHHHHH-HHhCCCCCCceeHHHHHHHHHHhhcCCCc
Q 037528 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQ-AH-DENMRTRDFF-NQLDIDGSGRLDFKEVLTLYYILKSRRPI 91 (158)
Q Consensus 15 ~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~l-g~-~~~~~~~~~~-~~lD~d~dG~IsfeEFl~l~~~~~~~~~~ 91 (158)
-.++++..+..-|...++++.-..+.++|..-.-.+ +. -.+.++..++ ...|...||-|+|+||..+=..+
T Consensus 30 a~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~l------ 103 (694)
T KOG0751|consen 30 ADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVL------ 103 (694)
T ss_pred CChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhc------
Confidence 344455555455566788999999999987654433 33 2334444444 44577789999999998754322
Q ss_pred chhhHHHHHhhhhhcccccccCCcchhhhHh
Q 037528 92 CGRCRIFITNEYFACMRCFETGSAAYSICLE 122 (158)
Q Consensus 92 c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~~ 122 (158)
|- ..-.|..+|+-||+.+|+...|..
T Consensus 104 C~-----pDal~~~aFqlFDr~~~~~vs~~~ 129 (694)
T KOG0751|consen 104 CA-----PDALFEVAFQLFDRLGNGEVSFED 129 (694)
T ss_pred cC-----chHHHHHHHHHhcccCCCceehHH
Confidence 21 134566678999999998888743
No 93
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=94.29 E-value=0.17 Score=33.92 Aligned_cols=71 Identities=8% Similarity=0.105 Sum_probs=47.4
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHHHhhcCCCcchhhHHHHHhhhhhcccccccCCcchhh----------hHhhhCC
Q 037528 57 RTRDFFNQLDIDGSGRLDFKEVLTLYYILKSRRPICGRCRIFITNEYFACMRCFETGSAAYSI----------CLECFGD 126 (158)
Q Consensus 57 ~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~----------c~~c~~~ 126 (158)
.+..+|..+|.+++|.|+++|+..++... +-+ ...+..++ +-+|.++++++. ...|..+
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~--~~~-----~~ev~~i~----~~~d~~~~g~I~~~eF~~~~~~~~~~~~g 79 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKS--GLP-----QTLLAKIW----NLADIDNDGELDKDEFALAMHLIYRKLNG 79 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHHc--CCC-----HHHHHHHH----HHhcCCCCCCcCHHHHHHHHHHHHHHHcC
Confidence 45778999999999999999999998763 221 34455553 556766655432 2344456
Q ss_pred CCCccccCCccee
Q 037528 127 KGSLNHNHVRSYF 139 (158)
Q Consensus 127 ~~~~~h~~~~~~f 139 (158)
+ ++.|...++++
T Consensus 80 ~-~~~~~~~~~~~ 91 (96)
T smart00027 80 Y-PIPASLPPSLI 91 (96)
T ss_pred C-CCCccCCHhhc
Confidence 6 77776666655
No 94
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.20 E-value=0.048 Score=45.33 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 15 ~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
+.+.=+..+.-+|..+|.+.||.++..||..+... . .+.=++.+|...|...||.|+-.|+..-+..
T Consensus 244 ~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld--k-nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 244 ILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD--K-NEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred cCcchhhhhhhhhhccccccccccCHHHhhhhhcc--C-chhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 34455667888999999999999999999887432 2 4555788999999999999999999876643
No 95
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=94.06 E-value=0.017 Score=33.97 Aligned_cols=32 Identities=31% Similarity=0.860 Sum_probs=25.4
Q ss_pred cchhhH-HHHHhhhhhcccccccCCcchhhhHhhhCCC
Q 037528 91 ICGRCR-IFITNEYFACMRCFETGSAAYSICLECFGDK 127 (158)
Q Consensus 91 ~c~~c~-~~l~~~~~~~~~cfd~~~~~~~~c~~c~~~~ 127 (158)
.|++|+ .-+.|.=..|..|. .|++|..|+..+
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~-----dyDLC~~C~~~~ 34 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECP-----NYDLCTTCYHGD 34 (45)
T ss_pred CCCCCCCCCcccCeEECCCCC-----CccchHHHhCCC
Confidence 588898 56778876666665 399999999977
No 96
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=93.97 E-value=0.077 Score=43.88 Aligned_cols=60 Identities=8% Similarity=0.087 Sum_probs=37.2
Q ss_pred HHHHHhhhcCCCCcceeHHHHHHHHHhc-CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 037528 23 FNQFFQSMDKDGNRRVSYREFSDFMSLQ-AHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYY 83 (158)
Q Consensus 23 ~~~~F~~~D~d~dG~Is~~El~~~l~~l-g~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~ 83 (158)
++-+|++|+.+.||.++..+|.-+++.. |. ..-.+..+|+..+...+|+|++++|..++.
T Consensus 298 iq~afk~f~v~eDg~~ge~~ls~ilq~~lgv-~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 298 IQYAFKRFSVAEDGISGEHILSLILQVVLGV-EVLRVPVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhcCc-ceeeccccchhhhcccCcceeHHHHHHHHH
Confidence 4456667777777777766666666542 43 334445566666666677777777766543
No 97
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=93.95 E-value=0.017 Score=34.39 Aligned_cols=38 Identities=24% Similarity=0.757 Sum_probs=28.4
Q ss_pred chhhHH-HHHhhhhhcccccccCCcchhhhHhhhCCCCCccccC
Q 037528 92 CGRCRI-FITNEYFACMRCFETGSAAYSICLECFGDKGSLNHNH 134 (158)
Q Consensus 92 c~~c~~-~l~~~~~~~~~cfd~~~~~~~~c~~c~~~~~~~~h~~ 134 (158)
|++|+. -+.|+=+.|..|.| -.|++|..||... . .|+.
T Consensus 3 Cd~C~~~pI~G~R~~C~~C~~---~d~DlC~~C~~~~-~-~H~~ 41 (48)
T cd02341 3 CDSCGIEPIPGTRYHCSECDD---GDFDLCQDCVVKG-E-SHQE 41 (48)
T ss_pred CCCCCCCccccceEECCCCCC---CCCccCHHHHhCc-C-CCCC
Confidence 778887 67788766666665 3599999999977 4 6644
No 98
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=93.52 E-value=0.11 Score=35.15 Aligned_cols=32 Identities=9% Similarity=0.259 Sum_probs=27.4
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH 52 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~ 52 (158)
..+.++++.+|.|+||.|+.+||..++..+..
T Consensus 48 ~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 48 MAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLI 79 (91)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 45778899999999999999999998877643
No 99
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=93.22 E-value=0.26 Score=32.32 Aligned_cols=59 Identities=10% Similarity=-0.022 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCC--CCCCceeHHHHHHHHHHhhcCCCcchhhHHHHHhhhhhcccccccCCcchh
Q 037528 56 MRTRDFFNQLDI--DGSGRLDFKEVLTLYYILKSRRPICGRCRIFITNEYFACMRCFETGSAAYS 118 (158)
Q Consensus 56 ~~~~~~~~~lD~--d~dG~IsfeEFl~l~~~~~~~~~~c~~c~~~l~~~~~~~~~cfd~~~~~~~ 118 (158)
..+..+|..+|. +++|.|+.+|+..++........-..--...+..++ +-+|.++++.+
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~----~~~d~~~~g~I 68 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIM----KDLDVNKDGKV 68 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHH----HHhccCCCCcC
Confidence 346778999999 899999999999998752211100000133455553 55676665543
No 100
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=93.15 E-value=0.11 Score=43.06 Aligned_cols=65 Identities=20% Similarity=0.396 Sum_probs=50.5
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHH---HHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhh
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFS---DFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILK 86 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~---~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~ 86 (158)
+.+.-.|..+|+|+++.|...|++ .++.+-.. ...=.+++++..|.|+|..|++.|++.-+..-.
T Consensus 333 Rvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~-~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~ 400 (421)
T KOG4578|consen 333 RVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSK-PRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEK 400 (421)
T ss_pred heeeeeeeeecccccCccchhhcchHHHHHHhhcc-HHHHhhhcchhcccCCCceecHHHHhhhhcccc
Confidence 345568999999999999999854 44444333 344467899999999999999999998776543
No 101
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=92.88 E-value=0.25 Score=34.81 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 037528 54 ENMRTRDFFNQLDIDGSGRLDFKEVLTLY 82 (158)
Q Consensus 54 ~~~~~~~~~~~lD~d~dG~IsfeEFl~l~ 82 (158)
-...+.++|..+|.|+||.|+.+|+..+.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 45668999999999999999999999876
No 102
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=92.84 E-value=0.23 Score=36.65 Aligned_cols=62 Identities=18% Similarity=0.384 Sum_probs=48.9
Q ss_pred hhhcCCCCcceeHHHHHHHHHhcCC--CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcCC
Q 037528 28 QSMDKDGNRRVSYREFSDFMSLQAH--DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSRR 89 (158)
Q Consensus 28 ~~~D~d~dG~Is~~El~~~l~~lg~--~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~ 89 (158)
..|-.||+|.++.++|.+++..+.. |-+-.+.-.|+.+|-|+|+.|--++....+..+..+.
T Consensus 78 e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~e 141 (189)
T KOG0038|consen 78 EVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDE 141 (189)
T ss_pred HHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhcc
Confidence 3445799999999999999987755 3333445568889999999999999998888877654
No 103
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=92.82 E-value=0.15 Score=33.99 Aligned_cols=31 Identities=16% Similarity=0.489 Sum_probs=26.7
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhcC
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQA 51 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg 51 (158)
..+.++|+.+|.+++|.|+.+||..++..+.
T Consensus 52 ~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 52 DAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 3577889999999999999999999887653
No 104
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=92.75 E-value=0.24 Score=43.24 Aligned_cols=93 Identities=16% Similarity=0.222 Sum_probs=63.2
Q ss_pred hhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhc--C------------------
Q 037528 29 SMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKS--R------------------ 88 (158)
Q Consensus 29 ~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~--~------------------ 88 (158)
.-|..+||.|+.+||..+=.-+.. ++......|.-+|+.++|.++++++..++....- .
T Consensus 82 iaD~tKDglisf~eF~afe~~lC~-pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~ 160 (694)
T KOG0751|consen 82 IADQTKDGLISFQEFRAFESVLCA-PDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIR 160 (694)
T ss_pred hhhhcccccccHHHHHHHHhhccC-chHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHH
Confidence 456778888999998776433333 4555666888889999999999988887765321 0
Q ss_pred ------CCcchhhHHHHHhhhhhcccccccCCcchhhhHh
Q 037528 89 ------RPICGRCRIFITNEYFACMRCFETGSAAYSICLE 122 (158)
Q Consensus 89 ------~~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~~ 122 (158)
..||+--.++..+-=.|+|+-.|+.+|+++.-++
T Consensus 161 ~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ld 200 (694)
T KOG0751|consen 161 KRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLD 200 (694)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeec
Confidence 0344434444444556778888999998876544
No 105
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.01 E-value=0.43 Score=43.33 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhc
Q 037528 17 DEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKS 87 (158)
Q Consensus 17 ~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~ 87 (158)
......+..+|+..|++.+|.++..+...++..+.. .....+..+|++.+..+++++..++|.........
T Consensus 132 ~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~ 203 (746)
T KOG0169|consen 132 SRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK 203 (746)
T ss_pred chHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc
Confidence 344566888999999999999999999999998877 78888888999998889999999999887766544
No 106
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=91.58 E-value=0.81 Score=42.48 Aligned_cols=76 Identities=11% Similarity=-0.076 Sum_probs=59.2
Q ss_pred hccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCH-H----HHHHHHHHhCCCCCCceeHHHHHHHHHHh
Q 037528 12 YNSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DEN-M----RTRDFFNQLDIDGSGRLDFKEVLTLYYIL 85 (158)
Q Consensus 12 ~~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~-~----~~~~~~~~lD~d~dG~IsfeEFl~l~~~~ 85 (158)
....++.+..+++..|+.+|+...|.++.+++..+|..+|. ..+ . ++..++...|.+..|.++|.+|...+.+-
T Consensus 738 sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 738 SKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred ccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 34456778899999999999999999999999999999998 322 1 23334555566677999999999988765
Q ss_pred hc
Q 037528 86 KS 87 (158)
Q Consensus 86 ~~ 87 (158)
.+
T Consensus 818 ~e 819 (890)
T KOG0035|consen 818 YE 819 (890)
T ss_pred hh
Confidence 44
No 107
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=91.52 E-value=0.062 Score=30.89 Aligned_cols=35 Identities=29% Similarity=0.871 Sum_probs=24.9
Q ss_pred cchhhHHHHHhhhhhcccccccCCcchhhhHhhhCCCCCccccC
Q 037528 91 ICGRCRIFITNEYFACMRCFETGSAAYSICLECFGDKGSLNHNH 134 (158)
Q Consensus 91 ~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~~c~~~~~~~~h~~ 134 (158)
.|+.|..++ |.- ++|-.+. .|++|..|+... .|+|
T Consensus 2 ~C~~C~~~~-~~r---~~C~~C~--dfDLC~~C~~~~---~H~H 36 (41)
T cd02337 2 TCNECKHHV-ETR---WHCTVCE--DYDLCITCYNTK---NHPH 36 (41)
T ss_pred cCCCCCCcC-CCc---eECCCCc--chhhHHHHhCCC---CCCc
Confidence 377787744 343 4555554 599999999988 6777
No 108
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=91.45 E-value=0.056 Score=32.18 Aligned_cols=32 Identities=34% Similarity=0.821 Sum_probs=23.4
Q ss_pred cchhhHHHHHh-hhhhcccccccCCcchhhhHhhhCCC
Q 037528 91 ICGRCRIFITN-EYFACMRCFETGSAAYSICLECFGDK 127 (158)
Q Consensus 91 ~c~~c~~~l~~-~~~~~~~cfd~~~~~~~~c~~c~~~~ 127 (158)
.|++|..-+.+ ..+.|..|. .|++|..||..+
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~-----d~dLC~~Cf~~g 34 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECP-----DFDLCLECFSAG 34 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCC-----CcchhHHhhhCc
Confidence 47788865544 766666665 499999999966
No 109
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=91.35 E-value=0.045 Score=32.66 Aligned_cols=32 Identities=38% Similarity=0.902 Sum_probs=25.5
Q ss_pred cchhhHH-HHHhhhhhcccccccCCcchhhhHhhhCCC
Q 037528 91 ICGRCRI-FITNEYFACMRCFETGSAAYSICLECFGDK 127 (158)
Q Consensus 91 ~c~~c~~-~l~~~~~~~~~cfd~~~~~~~~c~~c~~~~ 127 (158)
.|++|.. -+.|+-+.|.+|. .|++|..||...
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~-----dydLC~~Cf~~~ 34 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCR-----DYSLCLGCYTKG 34 (49)
T ss_pred cCCCCCCCCceEeeEECCCCC-----CcCchHHHHhCC
Confidence 4778887 6668877777775 599999999966
No 110
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.16 E-value=0.11 Score=48.21 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=64.6
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcC
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSR 88 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~ 88 (158)
.+++..+..+.++|...|.+.+|.|+..+....+...|+ +...+..++...|.+..|.|++.+|...+..+...
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl-~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~~ 349 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGL-SKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQK 349 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCcccccccccccccCCC-ChhhhhhhhhhcchhccCcccccccchhhhhhhhh
Confidence 456778888999999999999999999999999988887 77788889999999999999999998877765543
No 111
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=91.15 E-value=0.042 Score=32.77 Aligned_cols=32 Identities=25% Similarity=0.937 Sum_probs=25.6
Q ss_pred cchhhH-HHHHhhhhhcccccccCCcchhhhHhhhCCC
Q 037528 91 ICGRCR-IFITNEYFACMRCFETGSAAYSICLECFGDK 127 (158)
Q Consensus 91 ~c~~c~-~~l~~~~~~~~~cfd~~~~~~~~c~~c~~~~ 127 (158)
.|++|+ .-+.|.-+.|.+|. .|++|..||..+
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~-----d~dlC~~Cf~~~ 34 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICY-----DYDLCADCYDSG 34 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCC-----CCccchhHHhCC
Confidence 478888 66778877777775 599999999966
No 112
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=90.77 E-value=0.6 Score=37.39 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=48.0
Q ss_pred HHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHH
Q 037528 22 LFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTL 81 (158)
Q Consensus 22 ~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l 81 (158)
..+++=..+|.+.||.++.+|+..++--+.. .+-.++..++..-|.+++.+++.+|.+..
T Consensus 282 RkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 282 RKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred HHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 3455556889999999999999998654444 46667788888889999999999998763
No 113
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=90.74 E-value=0.84 Score=34.46 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=44.8
Q ss_pred HHHHHhhhcCCCCcceeHHHHHHHHHhcCC-C------------------------------------------------
Q 037528 23 FNQFFQSMDKDGNRRVSYREFSDFMSLQAH-D------------------------------------------------ 53 (158)
Q Consensus 23 ~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~------------------------------------------------ 53 (158)
+++=-.-||.|+||.|.+.|--.-++.+|. +
T Consensus 9 LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD 88 (174)
T PF05042_consen 9 LQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYD 88 (174)
T ss_pred HhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccc
Confidence 334445689999999999997666665444 1
Q ss_pred -----CHHHHHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 54 -----ENMRTRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 54 -----~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
.++..+++|..+++.+.+.+++.|...++..
T Consensus 89 ~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 89 TEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred cCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 1222377888888877788999998888765
No 114
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=90.65 E-value=0.058 Score=31.68 Aligned_cols=41 Identities=20% Similarity=0.428 Sum_probs=30.0
Q ss_pred cchhhHHHHHhhhhhcccccccCCcchhhhHhhhCCCCCccccCCcc
Q 037528 91 ICGRCRIFITNEYFACMRCFETGSAAYSICLECFGDKGSLNHNHVRS 137 (158)
Q Consensus 91 ~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~~c~~~~~~~~h~~~~~ 137 (158)
.|+.|+.-+..+...+.++- .+++|+.||.+. +|..+|.-.
T Consensus 2 ~C~~Cg~D~t~vryh~~~~~-----~~dLC~~CF~~G-~f~~~~~s~ 42 (45)
T cd02336 2 HCFTCGNDCTRVRYHNLKAK-----KYDLCPSCYQEG-RFPSNFQSS 42 (45)
T ss_pred cccCCCCccCceEEEecCCC-----ccccChHHHhCc-CCCCCCccc
Confidence 36667776666766665554 699999999998 898777443
No 115
>PF14658 EF-hand_9: EF-hand domain
Probab=90.55 E-value=0.98 Score=28.69 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=25.1
Q ss_pred HHHHHHhhhcCCCC-cceeHHHHHHHHHh
Q 037528 22 LFNQFFQSMDKDGN-RRVSYREFSDFMSL 49 (158)
Q Consensus 22 ~~~~~F~~~D~d~d-G~Is~~El~~~l~~ 49 (158)
+++.+-+.+|+++. |.|+.+.|..+|+.
T Consensus 36 ~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 36 ELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 68888999999998 99999999999874
No 116
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.92 E-value=0.2 Score=43.20 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=33.1
Q ss_pred CCcchhhHHHHHhhhhhcccccccCCcchhhhHhhhC
Q 037528 89 RPICGRCRIFITNEYFACMRCFETGSAAYSICLECFG 125 (158)
Q Consensus 89 ~~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~~c~~ 125 (158)
.+|||+|+.+|.|++-|+++|=.++-|-+..|..=-+
T Consensus 121 PTFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~nVP 157 (683)
T KOG0696|consen 121 PTFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVENVP 157 (683)
T ss_pred CchhhhHHHHHHHHHhcccccccccchHHHHHhhcCC
Confidence 4899999999999999999999999999999865443
No 117
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=89.90 E-value=0.29 Score=40.37 Aligned_cols=62 Identities=13% Similarity=0.158 Sum_probs=46.1
Q ss_pred HHhhhcCCCCcceeHHHHHHHHHhc----CCCC--HHHH-----------HHHHHHhCCCCCCceeHHHHHHHHHHhhc
Q 037528 26 FFQSMDKDGNRRVSYREFSDFMSLQ----AHDE--NMRT-----------RDFFNQLDIDGSGRLDFKEVLTLYYILKS 87 (158)
Q Consensus 26 ~F~~~D~d~dG~Is~~El~~~l~~l----g~~~--~~~~-----------~~~~~~lD~d~dG~IsfeEFl~l~~~~~~ 87 (158)
+|...|.|+||.++-.|+.+++..- -.|+ +++. +.+++..|.|.|--|+.+||+..-.....
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~kef 327 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKEF 327 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhccc
Confidence 7889999999999999998887632 1131 1221 33688899999999999999987654433
No 118
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=89.39 E-value=0.57 Score=39.79 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHh
Q 037528 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSL 49 (158)
Q Consensus 15 ~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~ 49 (158)
++.++......+|..+|.|+||.|+.+||..++..
T Consensus 351 Is~~E~~~~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 351 ITREEWLGSDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred CcHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 45566555688999999999999999999998865
No 119
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=88.64 E-value=0.36 Score=42.90 Aligned_cols=42 Identities=19% Similarity=0.491 Sum_probs=36.0
Q ss_pred CcchhhHHHHHhhhhhcccccccCCcchhhhHhhhCCCCCcc
Q 037528 90 PICGRCRIFITNEYFACMRCFETGSAAYSICLECFGDKGSLN 131 (158)
Q Consensus 90 ~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~~c~~~~~~~~ 131 (158)
+.|+.|+-+|+|.|.||++|+-+++.-++.|+.=.+.-|++.
T Consensus 535 tsCkvC~mllrGtfYQGY~C~~c~~~ahkecl~~vp~cgr~~ 576 (865)
T KOG2996|consen 535 TSCKVCQMLLRGTFYQGYKCEKCGADAHKECLGRVPPCGRYL 576 (865)
T ss_pred cchHHHHHHhhhhhhcceeeeeccccHHHHhccCCCCccccc
Confidence 789999999999999999999999999999976555444444
No 120
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=88.54 E-value=2.5 Score=25.14 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHH
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQ 64 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~ 64 (158)
.++++++..+...|.. +.+++..+...+...+|+ +...|..+|..
T Consensus 6 ~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l-~~~~V~~WF~n 50 (57)
T PF00046_consen 6 RFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELGL-TERQVKNWFQN 50 (57)
T ss_dssp SSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHTS-SHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----hccccccccccccccccc-cccccccCHHH
Confidence 5788999999999983 677999999999999998 88889888864
No 121
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=88.33 E-value=0.14 Score=30.09 Aligned_cols=41 Identities=27% Similarity=0.734 Sum_probs=27.6
Q ss_pred cchhhHH-HHHhhhhhcccccccCCcchhhhHhhhCCCCCccccCCcceee
Q 037528 91 ICGRCRI-FITNEYFACMRCFETGSAAYSICLECFGDKGSLNHNHVRSYFV 140 (158)
Q Consensus 91 ~c~~c~~-~l~~~~~~~~~cfd~~~~~~~~c~~c~~~~~~~~h~~~~~~f~ 140 (158)
.|++|+. -+.|.= ++|-.+. .|++|..||..+ .|+ ..+.|+
T Consensus 2 ~Cd~C~~~pI~G~R---ykC~~C~--dyDLC~~Cf~~~---~H~-~~H~F~ 43 (45)
T cd02344 2 TCDGCQMFPINGPR---FKCRNCD--DFDFCENCFKTR---KHN-TRHTFG 43 (45)
T ss_pred CCCCCCCCCCccCe---EECCCCC--CccchHHhhCCC---CcC-CCCcee
Confidence 4778874 467765 4555554 699999999988 573 345553
No 122
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=88.18 E-value=2.8 Score=24.78 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHH
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQ 64 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~ 64 (158)
.+++.++..+..+|.. +.+.+..++..+...+|+ +...|..+|..
T Consensus 6 ~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~l-~~~qV~~WF~n 50 (59)
T cd00086 6 RFTPEQLEELEKEFEK-----NPYPSREEREELAKELGL-TERQVKIWFQN 50 (59)
T ss_pred cCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHCc-CHHHHHHHHHH
Confidence 4678889999999986 568999999999999998 88999988864
No 123
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.12 E-value=2.6 Score=38.90 Aligned_cols=70 Identities=21% Similarity=0.322 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhh
Q 037528 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILK 86 (158)
Q Consensus 15 ~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~ 86 (158)
+++++.......|..+- -+.|+|+-..-+.++-..|+ +..-+.+|+...|.|.||+++..||--.|.-+.
T Consensus 10 vT~~Er~K~~~qF~~Lk-p~~gfitg~qArnfflqS~L-P~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~ 79 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLK-PGQGFITGDQARNFFLQSGL-PTPVLAQIWALSDLDKDGRMDIREFSIAMKLIK 79 (1118)
T ss_pred cchHHHHHHHHHHhccC-CCCCccchHhhhhhHHhcCC-ChHHHHHHHHhhhcCccccchHHHHHHHHHHHH
Confidence 46777777777777664 46799999999999999898 566677899999999999999999988776543
No 124
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=88.03 E-value=1.2 Score=37.01 Aligned_cols=66 Identities=11% Similarity=0.116 Sum_probs=55.0
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC--CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhh
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH--DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILK 86 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~--~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~ 86 (158)
..+...|..||.+++|.++..|....+.-+.. .++.-++-.|+.++.+.||.+.-.+|-.+++...
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l 326 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL 326 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc
Confidence 56788999999999999999988888777644 3778888899999999999998877777766543
No 125
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=87.95 E-value=0.18 Score=40.78 Aligned_cols=43 Identities=23% Similarity=0.617 Sum_probs=34.1
Q ss_pred CcchhhHH-HHHhhhhhcccccccCCcchhhhHhhhCCCCCccccCCcceeeh
Q 037528 90 PICGRCRI-FITNEYFACMRCFETGSAAYSICLECFGDKGSLNHNHVRSYFVD 141 (158)
Q Consensus 90 ~~c~~c~~-~l~~~~~~~~~cfd~~~~~~~~c~~c~~~~~~~~h~~~~~~f~~ 141 (158)
.-||.|+. -|.|.=+.|..|-| |++|..|+... -| |..+.||.
T Consensus 153 v~CD~C~~~~IvG~RyKC~~C~d-----YDLCe~Ce~~~---~~-h~~H~~lR 196 (278)
T KOG4582|consen 153 VPCDNCGKPGIVGARYKCTVCPD-----YDLCERCEAGN---EH-HAAHAMLR 196 (278)
T ss_pred ccCCCccCCccccceeeecCCCc-----cchhHHhhcCC---CC-Ccccceee
Confidence 47999999 99999777777766 99999999974 23 55577766
No 126
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=86.74 E-value=0.066 Score=31.95 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=28.4
Q ss_pred CCCcchhhHHHHHhhhhhcccccccCCcchhhhH
Q 037528 88 RRPICGRCRIFITNEYFACMRCFETGSAAYSICL 121 (158)
Q Consensus 88 ~~~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~ 121 (158)
....|+.|+++|+|...++++|-+++-..+..|.
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~ 43 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCL 43 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGG
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhh
Confidence 3478999999999999999999999998888874
No 127
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=86.45 E-value=0.16 Score=30.31 Aligned_cols=32 Identities=34% Similarity=0.936 Sum_probs=23.9
Q ss_pred cchhhHH-HHHhhhhhcccccccCCcchhhhHhhhCCC
Q 037528 91 ICGRCRI-FITNEYFACMRCFETGSAAYSICLECFGDK 127 (158)
Q Consensus 91 ~c~~c~~-~l~~~~~~~~~cfd~~~~~~~~c~~c~~~~ 127 (158)
.|+.|+. -+.|.=+.|.+|. .|++|..||..+
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~-----d~DLC~~Cf~~g 34 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCF-----NYDLCQSCFFSG 34 (49)
T ss_pred CCCCCCCCCceeeeEECCCCC-----CcCchHHHHhCC
Confidence 4778885 3677766666665 499999999855
No 128
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=86.35 E-value=0.77 Score=29.41 Aligned_cols=52 Identities=10% Similarity=0.226 Sum_probs=33.4
Q ss_pred HHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCC-------CCCCceeHHHHHH
Q 037528 22 LFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDI-------DGSGRLDFKEVLT 80 (158)
Q Consensus 22 ~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~-------d~dG~IsfeEFl~ 80 (158)
++.+.|+.+ .++.++|+..||+..|. +++++-+...+.. ...|.++|..|+.
T Consensus 7 qv~~aFr~l-A~~KpyVT~~dLr~~l~------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 7 QVEEAFRAL-AGGKPYVTEEDLRRSLT------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHH-CTSSSCEEHHHHHHHS-------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHH-HcCCCcccHHHHHHHcC------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 477889988 78889999999998743 2222333333222 1236799998875
No 129
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=86.08 E-value=1.3 Score=39.32 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=48.7
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-C-CH-HHHHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-D-EN-MRTRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~-~~-~~~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
.+++.-++-+..+|..||.|+||.++..|+..+....+- | +. .+.... -.+..|.+++.-|+..+.-
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t----~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST----VKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc----eecccceeehhhHHHHHHH
Confidence 466777888999999999999999999999999998866 3 10 001101 1125688888888876543
No 130
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=85.63 E-value=1.6 Score=30.13 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=26.4
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHh
Q 037528 13 NSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSL 49 (158)
Q Consensus 13 ~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~ 49 (158)
+.++.+. +..++...|.+++|+++.+||.-+|.-
T Consensus 38 S~L~~~~---L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 38 SGLPRDV---LAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp TTSSHHH---HHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred cCCCHHH---HHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 3566654 666788999999999999999988764
No 131
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=85.51 E-value=0.41 Score=27.73 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=29.0
Q ss_pred CCcchhhHHHHHhhhhhcccccccCCcchhhhH
Q 037528 89 RPICGRCRIFITNEYFACMRCFETGSAAYSICL 121 (158)
Q Consensus 89 ~~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~ 121 (158)
.++|..|+..|+++..++++|-+.+-..+..|.
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~ 43 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCA 43 (50)
T ss_pred CCChhhcchhhhccccceeEcCCCCCchhhhhh
Confidence 468999999999988899999999888888774
No 132
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=83.22 E-value=5.4 Score=30.13 Aligned_cols=61 Identities=18% Similarity=0.321 Sum_probs=42.6
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC---C-----CHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH---D-----ENMRTRDFFNQLDIDGSGRLDFKEVLTLY 82 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~---~-----~~~~~~~~~~~lD~d~dG~IsfeEFl~l~ 82 (158)
+.+.++|..+++.+.+.++..|+.++++.--. | ..-|...++ .+-.+.+|.+..|+...++
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y-~L~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALY-ILAKDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHH-HHHcCcCCcEeHHHHhhhc
Confidence 45888999999999999999999999987422 1 222223233 2345678888888776555
No 133
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=83.15 E-value=0.44 Score=27.32 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=28.7
Q ss_pred CCCcchhhHHHHHhhhhhcccccccCCcchhhhHh
Q 037528 88 RRPICGRCRIFITNEYFACMRCFETGSAAYSICLE 122 (158)
Q Consensus 88 ~~~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~~ 122 (158)
+..+|..|...+++.+ ++++|-+.+...+..|..
T Consensus 10 ~~~~C~~C~~~i~~~~-~~~~C~~C~~~~H~~C~~ 43 (49)
T smart00109 10 KPTKCCVCRKSIWGSF-QGLRCSWCKVKCHKKCAE 43 (49)
T ss_pred CCCCccccccccCcCC-CCcCCCCCCchHHHHHHh
Confidence 3478999999999876 899999999888888753
No 134
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.32 E-value=0.83 Score=41.35 Aligned_cols=44 Identities=20% Similarity=0.444 Sum_probs=36.8
Q ss_pred CcchhhHHHHHhhhhhcccccccCCcchhhhH-----hhhC---CCCCccccC
Q 037528 90 PICGRCRIFITNEYFACMRCFETGSAAYSICL-----ECFG---DKGSLNHNH 134 (158)
Q Consensus 90 ~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~-----~c~~---~~~~~~h~~ 134 (158)
+||-.|+++|||+-.+|.||-.+...+++-|. +|-. +| ..-|+.
T Consensus 184 t~cyecegllwglarqglrctqc~vk~hdkc~ell~adclqraaek-s~khg~ 235 (1283)
T KOG1011|consen 184 TFCYECEGLLWGLARQGLRCTQCQVKVHDKCRELLSADCLQRAAEK-STKHGE 235 (1283)
T ss_pred chhhhhhhHHHHHhhcccchhhccccHHHHHHHHhhhHHHHHHHHh-hccccc
Confidence 89999999999999999999999999999884 4654 45 444554
No 135
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=81.95 E-value=3.5 Score=35.73 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=53.7
Q ss_pred HHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcCC
Q 037528 24 NQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSRR 89 (158)
Q Consensus 24 ~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~ 89 (158)
-..|..++.+.+|.|+...|..+....-..+...+.+++..++..+.+.|.-.+|..++..+....
T Consensus 142 ~~~f~k~~~d~~g~it~~~Fi~~~~~~~~l~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Th 207 (493)
T KOG2562|consen 142 ASTFRKIDGDDTGHITRDKFINYWMRGLMLTHTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATH 207 (493)
T ss_pred hhhhhhhccCcCCceeHHHHHHHHHhhhhHHHHHHHHHHHHHhccCccceeccccHHHHHHHHhcC
Confidence 357899999999999999999887654335777888899999999999998888888777765543
No 136
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=81.25 E-value=14 Score=24.86 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=38.3
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHh-------cCC-C----CHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSL-------QAH-D----ENMRTRDFFNQLDIDGSGRLDFKEVLTLYY 83 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~-------lg~-~----~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~ 83 (158)
++++-+|+.+ .|++|.++..-|..+|.. +|. + .+..++..|... ...-.|+-++|+..+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 4577788888 688999998888877763 222 1 666778888764 2455799999998775
No 137
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=80.14 E-value=0.79 Score=38.32 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=54.8
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhcC--C--CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcC--CCcchh
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQA--H--DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSR--RPICGR 94 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg--~--~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~--~~~c~~ 94 (158)
..++.+|+.+-.++.+......+..+-..+. + +=..++.+||..+|.|.||.++-.|...+....... +||-+.
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfns 290 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFNS 290 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccCchhHHHHHHhh
Confidence 3578899988888777777666655544432 2 245789999999999999999999998877543322 244455
Q ss_pred hHHHH
Q 037528 95 CRIFI 99 (158)
Q Consensus 95 c~~~l 99 (158)
|..+-
T Consensus 291 CD~~k 295 (434)
T KOG3555|consen 291 CDTYK 295 (434)
T ss_pred hcccc
Confidence 54443
No 138
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=78.23 E-value=0.63 Score=40.24 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=30.2
Q ss_pred cCCCcchhhHHHHHhhhhhcccccccCCcchhhhHh
Q 037528 87 SRRPICGRCRIFITNEYFACMRCFETGSAAYSICLE 122 (158)
Q Consensus 87 ~~~~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~~ 122 (158)
+..+||.+|.+||||.=+|+|+|=-+.-.-+..|.+
T Consensus 54 KqPTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChe 89 (683)
T KOG0696|consen 54 KQPTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHE 89 (683)
T ss_pred cCCchhhhhhhheeccccCceeeeEEeehhhhhhcc
Confidence 345899999999999999999998877777777753
No 139
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=78.12 E-value=9.2 Score=34.24 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=27.1
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHH
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDF 46 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~ 46 (158)
.+.+.-+..+.++|+.-|.|.||.++-.|+..+
T Consensus 188 elkp~~v~al~RIFki~D~d~D~~Lsd~Eln~f 220 (625)
T KOG1707|consen 188 ELKPRCVKALKRIFKISDSDNDGALSDAELNDF 220 (625)
T ss_pred cccHHHHHHHHHHHhhhccccccccchhhhhHH
Confidence 355667888999999999999999998876543
No 140
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=74.86 E-value=14 Score=21.46 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHH
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQ 64 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~ 64 (158)
.++++++..+..+|.. +-+.+..+...+...+|+ +...|..+|..
T Consensus 6 ~~~~~~~~~L~~~f~~-----~~~P~~~~~~~la~~~~l-~~~qV~~WF~n 50 (56)
T smart00389 6 SFTPEQLEELEKEFQK-----NPYPSREEREELAAKLGL-SERQVKVWFQN 50 (56)
T ss_pred cCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHCc-CHHHHHHhHHH
Confidence 3678888999999973 227889999999999998 88888888864
No 141
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=74.66 E-value=8.5 Score=22.34 Aligned_cols=39 Identities=8% Similarity=0.075 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHH
Q 037528 40 YREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTL 81 (158)
Q Consensus 40 ~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l 81 (158)
.+|...+|.++|+ ++.++...++.+.. ...++.++.+..
T Consensus 3 ~~d~~~AL~~LGy-~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 3 LEDALEALISLGY-SKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHTTS--HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 3678899999999 89999999888865 334667776543
No 142
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=72.84 E-value=5.4 Score=31.10 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHHHhhcC
Q 037528 57 RTRDFFNQLDIDGSGRLDFKEVLTLYYILKSR 88 (158)
Q Consensus 57 ~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~ 88 (158)
....+|+.+|.+.||.|++.|...+|-++-..
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap 131 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAP 131 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCc
Confidence 34669999999999999999999998877543
No 143
>KOG4239 consensus Ras GTPase effector RASSF2 [Signal transduction mechanisms]
Probab=72.24 E-value=2.2 Score=35.12 Aligned_cols=38 Identities=21% Similarity=0.435 Sum_probs=33.5
Q ss_pred CcchhhHHHHHhhhhhcccccccCCcchhhh-----HhhhCCC
Q 037528 90 PICGRCRIFITNEYFACMRCFETGSAAYSIC-----LECFGDK 127 (158)
Q Consensus 90 ~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c-----~~c~~~~ 127 (158)
+-|+-|.+++||+..+|++|-.++-.|+..| .+|.+..
T Consensus 63 ~~~~~c~~~~~~vl~egL~c~~c~~tch~rcr~lv~ldc~~p~ 105 (348)
T KOG4239|consen 63 TWCDKCGDFIWGVLREGLLCIHCKFTCHIRCRMLVDLDCRSPP 105 (348)
T ss_pred ccchhhhHHHHHHHHHHHhhhhcCCccCHHHHhhhhhhhcCCC
Confidence 6689999999999999999999999999987 5676644
No 144
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=72.21 E-value=5.2 Score=36.06 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=42.6
Q ss_pred HHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHH
Q 037528 22 LFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEV 78 (158)
Q Consensus 22 ~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEF 78 (158)
-+..+|+.+|.+++|.|+..++...|..+-. ...+.+.-+|+.+|.+++ ..+.++-
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 4677899999999999999988888877644 234445667888888888 7777766
No 145
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.51 E-value=4.3 Score=34.38 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=48.3
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-C-CHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-D-ENMRTRDFFNQLDIDGSGRLDFKEVLTLYY 83 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~-~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~ 83 (158)
..++++|+.+|+.+.|+|+.+-++.++..+.. . .++.+.-+=+.+|+..-|-|-.++|+.-+.
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 45889999999999999999999999998885 3 444555555567877778777777665443
No 146
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=71.41 E-value=10 Score=37.82 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=45.7
Q ss_pred HHHHHHhhhcCCCCcceeHHHHHHHHHhcC---CCCHHHHHHHHHHhCCCCCCceeHHHH
Q 037528 22 LFNQFFQSMDKDGNRRVSYREFSDFMSLQA---HDENMRTRDFFNQLDIDGSGRLDFKEV 78 (158)
Q Consensus 22 ~~~~~F~~~D~d~dG~Is~~El~~~l~~lg---~~~~~~~~~~~~~lD~d~dG~IsfeEF 78 (158)
.++++....|++.+|+|+..|+.++|-+-. +.+..+|+..|+.++. +.-.|+-++.
T Consensus 2297 ~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~ 2355 (2399)
T KOG0040|consen 2297 EFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEEL 2355 (2399)
T ss_pred hHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHH
Confidence 578888999999999999999999987653 2467799999999998 5555666655
No 147
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=70.56 E-value=2 Score=35.82 Aligned_cols=43 Identities=19% Similarity=0.553 Sum_probs=27.6
Q ss_pred CcchhhHHHHHhhhhhcccccccCCcchhhhHhhhCCC-CCccccCCc
Q 037528 90 PICGRCRIFITNEYFACMRCFETGSAAYSICLECFGDK-GSLNHNHVR 136 (158)
Q Consensus 90 ~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~~c~~~~-~~~~h~~~~ 136 (158)
.-||+|..- ..-+-++||.-+ ..|++|..||..+ .+-.|+|+|
T Consensus 9 v~CdgC~k~--~~t~rrYkCL~C--~DyDlC~sCyen~~tt~~H~~dH 52 (381)
T KOG1280|consen 9 VSCDGCGKT--AFTFRRYKCLRC--SDYDLCFSCYENGATTPIHDEDH 52 (381)
T ss_pred ceecccccc--ceeeeeeEeeee--cchhHHHHHhhcCCCCcccCCCC
Confidence 568888652 112345566644 4699999999943 344588877
No 148
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=69.45 E-value=5.3 Score=19.50 Aligned_cols=15 Identities=20% Similarity=0.384 Sum_probs=9.4
Q ss_pred cCCCCcceeHHHHHH
Q 037528 31 DKDGNRRVSYREFSD 45 (158)
Q Consensus 31 D~d~dG~Is~~El~~ 45 (158)
|.|+||.|+.-++..
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 567777777666543
No 149
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=68.15 E-value=7.4 Score=23.97 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=34.4
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCcc----eeHHHHHHHHHhcCCCCHHHHHHHHH
Q 037528 13 NSGTDEERRLFNQFFQSMDKDGNRR----VSYREFSDFMSLQAHDENMRTRDFFN 63 (158)
Q Consensus 13 ~~~s~~~~~~~~~~F~~~D~d~dG~----Is~~El~~~l~~lg~~~~~~~~~~~~ 63 (158)
+.++++|+..+...|.. .|+ ++..+..++-..+|+ ++..++-+|.
T Consensus 6 T~Ft~~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lgl-~~~vvKVWfq 54 (58)
T TIGR01565 6 TKFTAEQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIGV-TRKVFKVWMH 54 (58)
T ss_pred CCCCHHHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhCC-CHHHeeeecc
Confidence 46789999999999984 456 788888888888888 6666555543
No 150
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=68.09 E-value=6.5 Score=27.36 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=18.2
Q ss_pred HHHHHhhhcCCCCcceeHHHHHH
Q 037528 23 FNQFFQSMDKDGNRRVSYREFSD 45 (158)
Q Consensus 23 ~~~~F~~~D~d~dG~Is~~El~~ 45 (158)
++.+|+.-|.|+||.||..|...
T Consensus 90 ~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 90 ARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHH-TT-SSSEEHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHcc
Confidence 56789999999999999999764
No 151
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=68.02 E-value=7.1 Score=35.97 Aligned_cols=32 Identities=28% Similarity=0.723 Sum_probs=25.9
Q ss_pred CcchhhHHH-HHhhhhhcccccccCCcchhhhHhhhCC
Q 037528 90 PICGRCRIF-ITNEYFACMRCFETGSAAYSICLECFGD 126 (158)
Q Consensus 90 ~~c~~c~~~-l~~~~~~~~~cfd~~~~~~~~c~~c~~~ 126 (158)
.-|..|..+ |.|+=+-|.+||| +++|.-||-.
T Consensus 604 ~kCniCk~~pIvG~RyR~l~~fn-----~dlCq~CF~s 636 (966)
T KOG4286|consen 604 AKCNICKECPIIGFRYRSLKHFN-----YDICQSCFFS 636 (966)
T ss_pred hhcchhhhCccceeeeeehhhcC-----hhHHhhHhhh
Confidence 668888886 7788889999995 6789999863
No 152
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=67.62 E-value=1.4 Score=25.58 Aligned_cols=34 Identities=26% Similarity=0.680 Sum_probs=22.6
Q ss_pred cchhhHHH-HHhhhhhcccccccCCcchhhhHhhhCCCCC
Q 037528 91 ICGRCRIF-ITNEYFACMRCFETGSAAYSICLECFGDKGS 129 (158)
Q Consensus 91 ~c~~c~~~-l~~~~~~~~~cfd~~~~~~~~c~~c~~~~~~ 129 (158)
.||+|+.. +.|.= ++|-.+ ..|++|..||...||
T Consensus 2 ~CDgCg~~PI~G~R---ykC~~C--~dyDLC~~C~~~~~n 36 (43)
T cd02342 2 QCDGCGVLPITGPR---YKSKVK--EDYDLCTICFSRMGN 36 (43)
T ss_pred CCCCCCCCcccccc---eEeCCC--CCCccHHHHhhhhcC
Confidence 47777753 44543 455554 369999999986643
No 153
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=66.27 E-value=6.7 Score=27.70 Aligned_cols=32 Identities=19% Similarity=0.468 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 53 DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 53 ~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
+++++.+.++.++-.|..|+|.|.||+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 58888999999999999999999999987763
No 154
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=65.72 E-value=3.4 Score=41.03 Aligned_cols=71 Identities=14% Similarity=0.252 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCC-----CHHHHHHHHHHhCCCCCCceeHHHHHHHHHHh
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHD-----ENMRTRDFFNQLDIDGSGRLDFKEVLTLYYIL 85 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~-----~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~ 85 (158)
.+++...+++.++...+|++..|+|...++..+++.+.-| +... +-+--.+....+|+|+|.+-+-++...
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 4677889999999999999999999999999999987321 1111 222234455678899998888776653
No 155
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=63.62 E-value=33 Score=24.40 Aligned_cols=66 Identities=9% Similarity=0.103 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhhcCCC--CcceeHHHHHHHHHhcC--------C-CC-H---------HHHHHHHHHhCCCCCCceeHH
Q 037528 18 EERRLFNQFFQSMDKDG--NRRVSYREFSDFMSLQA--------H-DE-N---------MRTRDFFNQLDIDGSGRLDFK 76 (158)
Q Consensus 18 ~~~~~~~~~F~~~D~d~--dG~Is~~El~~~l~~lg--------~-~~-~---------~~~~~~~~~lD~d~dG~Isfe 76 (158)
-.+..+.++|+....+. |..|+..|+..++..+- . .. + --+.+++..+|++++|+|+.-
T Consensus 38 v~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vl 117 (127)
T PF09068_consen 38 VDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVL 117 (127)
T ss_dssp --HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHH
T ss_pred eeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehh
Confidence 34556677888776543 57799999988887542 2 11 0 124678899999999999998
Q ss_pred HHHHHHH
Q 037528 77 EVLTLYY 83 (158)
Q Consensus 77 EFl~l~~ 83 (158)
+|...+.
T Consensus 118 s~KvaL~ 124 (127)
T PF09068_consen 118 SFKVALI 124 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876654
No 156
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=63.23 E-value=14 Score=26.77 Aligned_cols=53 Identities=9% Similarity=0.160 Sum_probs=27.0
Q ss_pred cceeHHHHHHHHHhcCCCCHHHHHHHHHHhCC-------CCCCceeHHHHHHHHHHhhcCC
Q 037528 36 RRVSYREFSDFMSLQAHDENMRTRDFFNQLDI-------DGSGRLDFKEVLTLYYILKSRR 89 (158)
Q Consensus 36 G~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~-------d~dG~IsfeEFl~l~~~~~~~~ 89 (158)
+.|++.||.++=+-+.+ +...++++++++.. +..+.|+|+.|...|.....-.
T Consensus 6 ~~lsp~eF~qLq~y~ey-s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d 65 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEY-STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVD 65 (138)
T ss_dssp S-S-HHHHHHHHHHHHH-----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S
T ss_pred eccCHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCC
Confidence 45666666554332222 33455566665532 2346899999999888766543
No 157
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.93 E-value=3.9 Score=37.07 Aligned_cols=35 Identities=20% Similarity=0.484 Sum_probs=31.9
Q ss_pred CCCcchhhHHHHHhhhhhcccccccCCcchhhhHh
Q 037528 88 RRPICGRCRIFITNEYFACMRCFETGSAAYSICLE 122 (158)
Q Consensus 88 ~~~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c~~ 122 (158)
+.+||++|+.++++...+|++|=.+..|.|..|..
T Consensus 240 ~ptFc~hCGs~L~r~~qqGlkCs~Cg~n~H~~c~~ 274 (694)
T KOG0694|consen 240 RPTFCDHCGSVLYRLRQQGLKCSTCGRNVHNRCVE 274 (694)
T ss_pred CccHHHhcchhhhhhcccCeeehhhhccccHHHHH
Confidence 55999999999999999999999999999988753
No 158
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=61.66 E-value=23 Score=27.08 Aligned_cols=46 Identities=17% Similarity=0.202 Sum_probs=39.8
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHH
Q 037528 13 NSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQ 64 (158)
Q Consensus 13 ~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~ 64 (158)
+.++.+|+..+..+|. ++++|.-.|=..+-+.+++ ++.+++-+|..
T Consensus 107 T~ft~~Ql~~LE~~F~-----~~~Yvvg~eR~~LA~~L~L-setQVkvWFQN 152 (197)
T KOG0843|consen 107 TAFTPEQLLKLEHAFE-----GNQYVVGAERKQLAQSLSL-SETQVKVWFQN 152 (197)
T ss_pred cccCHHHHHHHHHHHh-----cCCeeechHHHHHHHHcCC-ChhHhhhhhhh
Confidence 4578999999999997 7899999999999999998 88888888764
No 159
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=60.98 E-value=32 Score=21.80 Aligned_cols=27 Identities=4% Similarity=0.134 Sum_probs=15.3
Q ss_pred eHHHHHHHHHhcCC-CCHHHHHHHHHHh
Q 037528 39 SYREFSDFMSLQAH-DENMRTRDFFNQL 65 (158)
Q Consensus 39 s~~El~~~l~~lg~-~~~~~~~~~~~~l 65 (158)
+-+++.++++..|. +++.++..+++.-
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke 42 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKE 42 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCC
Confidence 33455566655555 5666666666553
No 160
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=59.95 E-value=35 Score=23.44 Aligned_cols=66 Identities=11% Similarity=0.257 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCC---CCCceeHHHHHHHHHHhhcC
Q 037528 19 ERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDID---GSGRLDFKEVLTLYYILKSR 88 (158)
Q Consensus 19 ~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d---~dG~IsfeEFl~l~~~~~~~ 88 (158)
.-..+..-|..+-+ ||.++.++|..++.. + -+.+...++|..+-.- ..+.|+.+|+..++..+...
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CIGM-~-dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD~ 96 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECIGM-K-DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISDQ 96 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHHT----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhcCC-c-ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhcc
Confidence 35566677777766 899999999988742 2 3677777777766322 24679999999988776543
No 161
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=59.25 E-value=32 Score=19.74 Aligned_cols=30 Identities=10% Similarity=0.213 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhcC--CCCcceeHHHHHHHHHh
Q 037528 20 RRLFNQFFQSMDK--DGNRRVSYREFSDFMSL 49 (158)
Q Consensus 20 ~~~~~~~F~~~D~--d~dG~Is~~El~~~l~~ 49 (158)
+..+..+|..|-. ....+++..||+.++..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4556677777752 23567888888888764
No 162
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=59.02 E-value=20 Score=23.83 Aligned_cols=50 Identities=8% Similarity=0.001 Sum_probs=27.7
Q ss_pred CCcceeHHHHHHHHH---h-cCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 34 GNRRVSYREFSDFMS---L-QAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 34 ~dG~Is~~El~~~l~---~-lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
.||.|+..|...+-. . +++ ++.+...++..+........++.+|...+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGL-DAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 356677666544432 2 344 5555555555554444445667777766554
No 163
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=58.76 E-value=37 Score=21.58 Aligned_cols=43 Identities=7% Similarity=0.073 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHHHhhcCC-CcchhhHHHHH
Q 037528 57 RTRDFFNQLDIDGSGRLDFKEVLTLYYILKSRR-PICGRCRIFIT 100 (158)
Q Consensus 57 ~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~-~~c~~c~~~l~ 100 (158)
+|..+|..+.. +.+.|+.++|...+...+... ..-..|..++.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~ 44 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIE 44 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence 46788888865 678899999999998777653 22344455444
No 164
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=58.51 E-value=6 Score=33.95 Aligned_cols=35 Identities=29% Similarity=0.784 Sum_probs=28.5
Q ss_pred CCCcchhhHHHHHhhh-hhcccccccCCcchhhhHhhhCCC
Q 037528 88 RRPICGRCRIFITNEY-FACMRCFETGSAAYSICLECFGDK 127 (158)
Q Consensus 88 ~~~~c~~c~~~l~~~~-~~~~~cfd~~~~~~~~c~~c~~~~ 127 (158)
+.+-|+.|...+.|.+ +.|+-| --|++|..|+...
T Consensus 13 ~ky~C~~C~~dit~~i~ikCaeC-----p~fdLCl~CFs~G 48 (438)
T KOG0457|consen 13 GKYNCDYCSLDITGLIRIKCAEC-----PDFDLCLQCFSVG 48 (438)
T ss_pred CCCCCccHhHHhccceEEEeecC-----CCcchhHHHHhcc
Confidence 5689999999999987 555555 4699999999954
No 165
>PF10955 DUF2757: Protein of unknown function (DUF2757); InterPro: IPR020115 This entry contains proteins with no known function.
Probab=58.25 E-value=5.7 Score=25.93 Aligned_cols=47 Identities=13% Similarity=0.300 Sum_probs=29.7
Q ss_pred cceeHHHHHHHHHhcCC--CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcCCCcchhhHHHHH
Q 037528 36 RRVSYREFSDFMSLQAH--DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSRRPICGRCRIFIT 100 (158)
Q Consensus 36 G~Is~~El~~~l~~lg~--~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~~~c~~c~~~l~ 100 (158)
|.|+.+.... ..+|+ +|+++-.+|+. .|.+|+ |. -+..|+.|++.|.
T Consensus 15 G~i~~~~v~~--~~LGf~~Lt~eEr~dmI~-~~~~G~--i~-------------V~~iCe~C~eaL~ 63 (76)
T PF10955_consen 15 GTIDASAVDE--EQLGFHHLTPEERQDMIS-YDENGD--IH-------------VKVICEDCQEALE 63 (76)
T ss_pred EEeeccccCH--hhcCcccCCHHHHhhheE-EcCCCC--EE-------------EEEecHHHHHHHH
Confidence 4455444333 56777 78888888875 444443 43 2467888888776
No 166
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=56.36 E-value=23 Score=22.36 Aligned_cols=30 Identities=3% Similarity=0.154 Sum_probs=26.2
Q ss_pred cceeHHHHHHHHHhcCC-CCHHHHHHHHHHh
Q 037528 36 RRVSYREFSDFMSLQAH-DENMRTRDFFNQL 65 (158)
Q Consensus 36 G~Is~~El~~~l~~lg~-~~~~~~~~~~~~l 65 (158)
--|+.+-++.++..+|. |++..++++++..
T Consensus 30 Ppine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 35899999999999999 9999999988764
No 167
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=55.92 E-value=53 Score=22.97 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=42.8
Q ss_pred HHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 037528 24 NQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLY 82 (158)
Q Consensus 24 ~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~ 82 (158)
...|-+++.-|+...+..+++.+|.+.|. ...+.++.++..+ +|+ +.+|.+.-=
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA~G 58 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIAAG 58 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHHHh
Confidence 34566777788888999999999999999 8888899999886 344 778876643
No 168
>PLN02952 phosphoinositide phospholipase C
Probab=55.37 E-value=61 Score=29.30 Aligned_cols=54 Identities=13% Similarity=0.294 Sum_probs=41.4
Q ss_pred CCcceeHHHHHHHHHhcCC---CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcC
Q 037528 34 GNRRVSYREFSDFMSLQAH---DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSR 88 (158)
Q Consensus 34 ~dG~Is~~El~~~l~~lg~---~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~ 88 (158)
+.|.++..++..+.+.+.. .+..++..+|..+-.++ +.++.++|...+...+..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e 69 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDE 69 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCC
Confidence 3578999999888777643 36788999998886543 679999999988877754
No 169
>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The N-end rule-based degradation signal, which targets a protein for ubiquitin-dependent proteolysis, comprises a destabilising amino-terminal residue and a specific internal lysine residue. This entry describes a putative zinc finger in N-recognin, a recognition component of the N-end rule pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0004842 ubiquitin-protein ligase activity, 0008270 zinc ion binding; PDB: 3NY1_B 3NIS_F 3NIM_A 3NIK_A 3NII_A 3NIH_A 3NIL_D 3NIN_B 3NIJ_A 3NIT_A ....
Probab=54.33 E-value=8.1 Score=24.47 Aligned_cols=25 Identities=32% Similarity=0.775 Sum_probs=18.8
Q ss_pred hcccccccC-CcchhhhHhhhCCCCCccc
Q 037528 105 ACMRCFETG-SAAYSICLECFGDKGSLNH 132 (158)
Q Consensus 105 ~~~~cfd~~-~~~~~~c~~c~~~~~~~~h 132 (158)
..|+|+++. +.+..+|.+||... .|
T Consensus 12 ~~y~C~tC~~~~~~~iC~~CF~~~---~H 37 (71)
T PF02207_consen 12 IFYRCLTCSLDESSGICEECFANS---CH 37 (71)
T ss_dssp EEEEETTTBSSTT-BBEHHHHCTS---GG
T ss_pred EEEECccCCCCCCEEEchhhCCCC---Cc
Confidence 346888875 47899999999877 66
No 170
>PLN02228 Phosphoinositide phospholipase C
Probab=53.70 E-value=58 Score=29.23 Aligned_cols=61 Identities=15% Similarity=0.310 Sum_probs=43.9
Q ss_pred HHHHHHhhhcCCCCcceeHHHHHHHHHhcCC---CCHHHHHHHHHHhCCC----CCCceeHHHHHHHHHH
Q 037528 22 LFNQFFQSMDKDGNRRVSYREFSDFMSLQAH---DENMRTRDFFNQLDID----GSGRLDFKEVLTLYYI 84 (158)
Q Consensus 22 ~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~---~~~~~~~~~~~~lD~d----~dG~IsfeEFl~l~~~ 84 (158)
++..+|..+-. ++.++.++|..+|....- .+.+.+..++..+... ..|.++.+.|..++..
T Consensus 25 ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 25 SIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 35566766643 357999999999987632 3566678888877543 3467999999998854
No 171
>PLN02222 phosphoinositide phospholipase C 2
Probab=53.54 E-value=48 Score=29.85 Aligned_cols=61 Identities=8% Similarity=0.138 Sum_probs=44.0
Q ss_pred HHHHHHhhhcCCCCcceeHHHHHHHHHhcCC---CCHHHHHHHHHHhCC-CCCCceeHHHHHHHHHH
Q 037528 22 LFNQFFQSMDKDGNRRVSYREFSDFMSLQAH---DENMRTRDFFNQLDI-DGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 22 ~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~---~~~~~~~~~~~~lD~-d~dG~IsfeEFl~l~~~ 84 (158)
++..+|..+-. ++.++.++|..+|....- .+.+.+..++..+.. ...+.++++.|..++..
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 46666776643 468999999999987643 266777888876532 23566999999998864
No 172
>PRK00523 hypothetical protein; Provisional
Probab=52.11 E-value=28 Score=22.45 Aligned_cols=30 Identities=0% Similarity=0.057 Sum_probs=26.4
Q ss_pred cceeHHHHHHHHHhcCC-CCHHHHHHHHHHh
Q 037528 36 RRVSYREFSDFMSLQAH-DENMRTRDFFNQL 65 (158)
Q Consensus 36 G~Is~~El~~~l~~lg~-~~~~~~~~~~~~l 65 (158)
=.|+.+-++.++..+|. |++..++++++..
T Consensus 38 Ppine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 38 PPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred cCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 35888999999999999 9999999998775
No 173
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.98 E-value=9.4 Score=35.74 Aligned_cols=63 Identities=24% Similarity=0.393 Sum_probs=54.2
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
..+...|+..|..++|.|+..+-..++...|+ ....+-+++...|..+-|.++..+|...+..
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L-~~qvl~qiws~~d~~~~g~l~~q~f~~~lrl 73 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSGL-PDQVLGQIWSLADSSGKGFLNRQGFYAALRL 73 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhcccc-chhhhhccccccccccCCccccccccccchH
Confidence 55778899999999999999999999999888 7777777888889888899999998875543
No 174
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=49.94 E-value=60 Score=21.36 Aligned_cols=63 Identities=13% Similarity=0.079 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHhc-cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHH
Q 037528 1 MEALRKVALAYYN-SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQ 64 (158)
Q Consensus 1 m~el~k~~~~~~~-~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~ 64 (158)
|++++.....-++ -++++.+..=.-+.+.++.+ +|.|+...+..+=+--.+ .+...+.+.++.
T Consensus 1 ~~~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~~~-~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~ 65 (82)
T cd08028 1 MDDLEKKIIRQIEYYFGDFNLPRDKFLKEQIKED-DGWVPMEVMLKFNRLKSLSSDPEVIAKALKK 65 (82)
T ss_pred ChHHHHHHHHHHHhhcCHhhhccCHHHHHHHhcc-CCCEEhHHHhCChhHHHhcCCHHHHHHHHHh
Confidence 5666665543221 24555544333345566655 899998887665332222 255555555554
No 175
>PF13551 HTH_29: Winged helix-turn helix
Probab=49.06 E-value=75 Score=20.89 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHH-H-hcCC-CCHHHHHHHHHH
Q 037528 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFSDFM-S-LQAH-DENMRTRDFFNQ 64 (158)
Q Consensus 15 ~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l-~-~lg~-~~~~~~~~~~~~ 64 (158)
+++++.+.+.+.+.....++.+..+..++...+ . ..|. ++...+..+++.
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~ 110 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKR 110 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHH
Confidence 556666666666665444433456666666644 3 2344 566666666654
No 176
>PLN02230 phosphoinositide phospholipase C 4
Probab=47.86 E-value=81 Score=28.53 Aligned_cols=63 Identities=6% Similarity=0.104 Sum_probs=43.6
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-C---CHHHHHHHHHHhCC-------CCCCceeHHHHHHHHHH
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-D---ENMRTRDFFNQLDI-------DGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~---~~~~~~~~~~~lD~-------d~dG~IsfeEFl~l~~~ 84 (158)
.++..+|..|-.++ +.++.++|..+|..-.- + +.+++..++..+-. -..+.++.+.|..++..
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 45777888885444 79999999999988652 2 55666666654321 12346999999997754
No 177
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=47.41 E-value=1.6e+02 Score=27.38 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=56.5
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcCC-CcchhhHHHH
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSRR-PICGRCRIFI 99 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~-~~c~~c~~~l 99 (158)
..+...|+..|..+++++...++..+...++. .+ ++..+|..+-.+ .+.++.++++.++...+... .--+.|++++
T Consensus 172 ~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~-rp-ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii 248 (746)
T KOG0169|consen 172 SKARRLFKESDNSQTGKLEEEEFVKFRKELTK-RP-EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEII 248 (746)
T ss_pred HHHHHHHHHHHhhccceehHHHHHHHHHhhcc-Cc-hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHH
Confidence 34566777778899999999999999988887 33 778888776554 78889988888887775422 2234556665
Q ss_pred Hh
Q 037528 100 TN 101 (158)
Q Consensus 100 ~~ 101 (158)
..
T Consensus 249 ~~ 250 (746)
T KOG0169|consen 249 ER 250 (746)
T ss_pred HH
Confidence 43
No 178
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.63 E-value=27 Score=30.02 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=42.6
Q ss_pred HHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHH
Q 037528 23 FNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTL 81 (158)
Q Consensus 23 ~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l 81 (158)
+-++|-.+-+ -+|+|+-..-+..|-...+ ++.-+-++++..|.|.||.++=+||.-.
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv~skl-pnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMVKSKL-PNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHHhccC-chhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 3345544433 3578887777777666555 7788899999999999999999999754
No 179
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=46.26 E-value=46 Score=24.11 Aligned_cols=80 Identities=24% Similarity=0.385 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHh-------hcCCC
Q 037528 18 EERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYIL-------KSRRP 90 (158)
Q Consensus 18 ~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~-------~~~~~ 90 (158)
++.+.+..+-+.+..+.....+..|+.+. .|. +...|..+++ .|+|.+.+|-.+...- .+|+
T Consensus 27 ~~e~~f~kV~~yLr~~p~~~ati~eV~e~---tgV-s~~~I~~~Ir------eGRL~~~~~~nl~~~CE~CG~~I~~Gr- 95 (137)
T TIGR03826 27 EEEREFEKVYKFLRKHENRQATVSEIVEE---TGV-SEKLILKFIR------EGRLQLKHFPNLGYPCERCGTSIREGR- 95 (137)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHH---HCc-CHHHHHHHHH------cCCeeccCCCCCcCcccccCCcCCCCC-
Confidence 34455555666555555545666666554 455 7788888875 4788887776655443 3354
Q ss_pred cchhhHHHHHhhhhhccc
Q 037528 91 ICGRCRIFITNEYFACMR 108 (158)
Q Consensus 91 ~c~~c~~~l~~~~~~~~~ 108 (158)
+|+.|..-|..-+.++.+
T Consensus 96 ~C~~C~~~l~~~l~~~~~ 113 (137)
T TIGR03826 96 LCDSCAGELKRQLSAGEQ 113 (137)
T ss_pred ccHHHHHHHHHHHHHHhc
Confidence 899999988777655554
No 180
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=45.96 E-value=59 Score=27.17 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=50.4
Q ss_pred HHhccCCHHHHHHHHHHHhh----hc----CCCCcceeHHHHHHHHHhc-CC-CCHHHHHHHHHHhCCCCCCceeHHHHH
Q 037528 10 AYYNSGTDEERRLFNQFFQS----MD----KDGNRRVSYREFSDFMSLQ-AH-DENMRTRDFFNQLDIDGSGRLDFKEVL 79 (158)
Q Consensus 10 ~~~~~~s~~~~~~~~~~F~~----~D----~d~dG~Is~~El~~~l~~l-g~-~~~~~~~~~~~~lD~d~dG~IsfeEFl 79 (158)
.+...+++++..+...-|.. .. .+.-| |...++.+.... |+ |..-.-+.+|...|.|+||.++-.|.-
T Consensus 190 ~yL~~l~eE~Rkeaesk~EE~~krH~~HpKvnhPG--SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELE 267 (442)
T KOG3866|consen 190 HYLAQLTEEERKEAESKHEESLKRHNDHPKVNHPG--SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELE 267 (442)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhhccCccCCCCC--cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHH
Confidence 35567777776655544432 22 12333 577888888766 56 655556778888999999999998888
Q ss_pred HHHHHh
Q 037528 80 TLYYIL 85 (158)
Q Consensus 80 ~l~~~~ 85 (158)
.++..-
T Consensus 268 aLFtkE 273 (442)
T KOG3866|consen 268 ALFTKE 273 (442)
T ss_pred HHHHHH
Confidence 887653
No 181
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.16 E-value=39 Score=21.67 Aligned_cols=31 Identities=3% Similarity=0.059 Sum_probs=26.6
Q ss_pred cceeHHHHHHHHHhcCC-CCHHHHHHHHHHhC
Q 037528 36 RRVSYREFSDFMSLQAH-DENMRTRDFFNQLD 66 (158)
Q Consensus 36 G~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD 66 (158)
=.|+.+-++.++..+|. |++..++++++...
T Consensus 37 Ppine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 37 PPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred CCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 35899999999999999 99999999887653
No 182
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.08 E-value=85 Score=23.04 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhcCCCCcceeHHHHHHHHH---h-cCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHh
Q 037528 20 RRLFNQFFQSMDKDGNRRVSYREFSDFMS---L-QAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYIL 85 (158)
Q Consensus 20 ~~~~~~~F~~~D~d~dG~Is~~El~~~l~---~-lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~ 85 (158)
+...--.|+.++.| |.++..|..++.. . +|+ +..++..++.....-+...|++..|...+..-
T Consensus 29 lAa~~Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i-~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~ 95 (148)
T COG4103 29 LAAAALLFHVMEAD--GTVSESEREAFRAILKENFGI-DGEELDALIEAGEEAGYEAIDLYSFTSVLKRH 95 (148)
T ss_pred HHHHHHHHHHHhcc--cCcCHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 33334688888766 4588887655433 2 355 88889998888777777889999998877643
No 183
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=44.93 E-value=26 Score=18.72 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=13.7
Q ss_pred CCceeHHHHHHHHHHhhc
Q 037528 70 SGRLDFKEVLTLYYILKS 87 (158)
Q Consensus 70 dG~IsfeEFl~l~~~~~~ 87 (158)
.|+|+++|++.+..+..+
T Consensus 2 ~~~i~~~~~~d~a~rv~~ 19 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNN 19 (33)
T ss_pred CceecHHHHHHHHHHHHH
Confidence 578888998888776543
No 184
>PLN02952 phosphoinositide phospholipase C
Probab=44.51 E-value=1e+02 Score=27.92 Aligned_cols=62 Identities=8% Similarity=0.158 Sum_probs=42.1
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC---CCHHHHHHHHHHhC-------CCCCCceeHHHHHHHHH
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH---DENMRTRDFFNQLD-------IDGSGRLDFKEVLTLYY 83 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~---~~~~~~~~~~~~lD-------~d~dG~IsfeEFl~l~~ 83 (158)
.++..+|..+-.++ +.++.++|..+|....- .+.+++..++..+- ..+.+.++++.|..++.
T Consensus 38 ~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 38 DDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 45777788775443 68999999999987633 35666666655431 11234589999998875
No 185
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=44.36 E-value=25 Score=22.81 Aligned_cols=35 Identities=14% Similarity=0.366 Sum_probs=22.3
Q ss_pred CCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCC
Q 037528 34 GNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDG 69 (158)
Q Consensus 34 ~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~ 69 (158)
..|+||..|+..+|..... +...+..++..+...+
T Consensus 18 ~~G~lT~~eI~~~L~~~~~-~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDDL-DPEQIDEIYDTLEDEG 52 (82)
T ss_dssp HHSS-BHHHHHHH-S-S----HHHHHHHHHHHHTT-
T ss_pred hcCcCCHHHHHHHcCccCC-CHHHHHHHHHHHHHCC
Confidence 4688999999999876555 7788888888775443
No 186
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=44.11 E-value=1.1e+02 Score=21.41 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=37.9
Q ss_pred HHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHH
Q 037528 26 FFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLT 80 (158)
Q Consensus 26 ~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~ 80 (158)
.+-+.-.-|+..+|.+++..+|...|. +.+..+..+++.+.. .+.+|.+.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 344444567777999999999999999 788888888888742 47777765
No 187
>PRK01844 hypothetical protein; Provisional
Probab=43.94 E-value=43 Score=21.59 Aligned_cols=29 Identities=3% Similarity=0.133 Sum_probs=26.0
Q ss_pred ceeHHHHHHHHHhcCC-CCHHHHHHHHHHh
Q 037528 37 RVSYREFSDFMSLQAH-DENMRTRDFFNQL 65 (158)
Q Consensus 37 ~Is~~El~~~l~~lg~-~~~~~~~~~~~~l 65 (158)
.|+.+-++..+..+|. |++..++++++..
T Consensus 38 pine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 38 PINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 5889999999999999 9999999988776
No 188
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=43.63 E-value=43 Score=30.41 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhcCC
Q 037528 54 ENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKSRR 89 (158)
Q Consensus 54 ~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~ 89 (158)
+..-+..+|..+|.+.+|.|+|.+++.-+..+..+.
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~ 588 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGD 588 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhh
Confidence 344467899999999999999999999998887764
No 189
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=42.78 E-value=50 Score=27.21 Aligned_cols=46 Identities=9% Similarity=0.179 Sum_probs=39.2
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHH
Q 037528 13 NSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQ 64 (158)
Q Consensus 13 ~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~ 64 (158)
+.+++.|+.+++..|. ..-+|+..|=.++-..+|+ |+.+|+-+|..
T Consensus 177 TaFT~~Ql~~LEkrF~-----~QKYLS~~DR~~LA~~LgL-TdaQVKtWfQN 222 (309)
T KOG0488|consen 177 TAFSDHQLFELEKRFE-----KQKYLSVADRIELAASLGL-TDAQVKTWFQN 222 (309)
T ss_pred hhhhHHHHHHHHHHHH-----HhhcccHHHHHHHHHHcCC-chhhHHHHHhh
Confidence 3578999999999997 3468999999999999998 99999988875
No 190
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=41.94 E-value=38 Score=24.10 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=20.6
Q ss_pred HHHHHhhhcCCCCcceeHHHHHHHHHhc
Q 037528 23 FNQFFQSMDKDGNRRVSYREFSDFMSLQ 50 (158)
Q Consensus 23 ~~~~F~~~D~d~dG~Is~~El~~~l~~l 50 (158)
+.-+...||++++|.|+.-.++.++..+
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 4557789999999999999999887653
No 191
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=41.29 E-value=54 Score=24.85 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=23.6
Q ss_pred cCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCC
Q 037528 31 DKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDI 67 (158)
Q Consensus 31 D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~ 67 (158)
..|.+|.++.+|+.+.+..-+. .+.+++.++...-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 4578999999999999888766 688889888876443
No 192
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.28 E-value=35 Score=24.35 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=22.8
Q ss_pred CHHHH-HHHHHHHhhhcCCCCcceeHHHHHHH
Q 037528 16 TDEER-RLFNQFFQSMDKDGNRRVSYREFSDF 46 (158)
Q Consensus 16 s~~~~-~~~~~~F~~~D~d~dG~Is~~El~~~ 46 (158)
++.++ ..+-.+.+--|.|+||+|+..||.+.
T Consensus 111 sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 111 SEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 34443 44566778889999999999888654
No 193
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=40.64 E-value=70 Score=22.94 Aligned_cols=48 Identities=21% Similarity=0.334 Sum_probs=36.7
Q ss_pred CCcceeHHHHHHHHHhc-------CC---CCHHHHHHHHHHhCCCCCC-ceeHHHHHHH
Q 037528 34 GNRRVSYREFSDFMSLQ-------AH---DENMRTRDFFNQLDIDGSG-RLDFKEVLTL 81 (158)
Q Consensus 34 ~dG~Is~~El~~~l~~l-------g~---~~~~~~~~~~~~lD~d~dG-~IsfeEFl~l 81 (158)
||-.||.+||.+++..- |. .++++++++.+.+...+.+ .++..|-+.+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 67889999999998854 21 2888899988888876655 4888887664
No 194
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=38.65 E-value=1.4e+02 Score=23.89 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=36.6
Q ss_pred HHHHhhhc--CCCCcceeHHHHHH---HHHhcCCCCHHH---HHHHHHHhCCCCCCceeHHHHHHHHHHhhcCC
Q 037528 24 NQFFQSMD--KDGNRRVSYREFSD---FMSLQAHDENMR---TRDFFNQLDIDGSGRLDFKEVLTLYYILKSRR 89 (158)
Q Consensus 24 ~~~F~~~D--~d~dG~Is~~El~~---~l~~lg~~~~~~---~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~~~ 89 (158)
..+|..+- ...||.|+..|+.. ++..+++ +.++ +..+|+.- .....++++|+..+.....++
T Consensus 56 ~a~~aLl~~vAkADG~Vse~Ei~~~~~l~~~~~l-~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~~r 125 (267)
T PRK09430 56 NTTFAVMGHLAKAKGRVTEADIRIASQLMDRMNL-HGEARRAAQQAFREG---KEPDFPLREKLRQFRSVCGGR 125 (267)
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHhccc
Confidence 34444443 25689999999862 2334465 5554 55666553 233477888888776544443
No 195
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=38.62 E-value=46 Score=20.73 Aligned_cols=36 Identities=11% Similarity=0.303 Sum_probs=30.3
Q ss_pred CCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCC
Q 037528 34 GNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDG 69 (158)
Q Consensus 34 ~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~ 69 (158)
.++-++..++.+.|...|. .++..++..++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4567899999999988888 78899999999988765
No 196
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=37.60 E-value=1.4e+02 Score=20.81 Aligned_cols=47 Identities=11% Similarity=0.127 Sum_probs=30.7
Q ss_pred hhhcCCCCcceeHHHHHHHHHhc----------CC-CCHHHHHHHHHHhCCCCCCcee
Q 037528 28 QSMDKDGNRRVSYREFSDFMSLQ----------AH-DENMRTRDFFNQLDIDGSGRLD 74 (158)
Q Consensus 28 ~~~D~d~dG~Is~~El~~~l~~l----------g~-~~~~~~~~~~~~lD~d~dG~Is 74 (158)
+.||....-+|+.+++..+++.- |. .|..-+-+++-+....+...++
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp 67 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLS 67 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence 46899999999999999998852 22 3444455555555444444444
No 197
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=37.29 E-value=14 Score=32.45 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=16.7
Q ss_pred CCCceeHHHHHHHHHHhhcC
Q 037528 69 GSGRLDFKEVLTLYYILKSR 88 (158)
Q Consensus 69 ~dG~IsfeEFl~l~~~~~~~ 88 (158)
|.|+|+|...-.++..+..+
T Consensus 414 GaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred CcceeeecccHHHHHHHhhh
Confidence 77999999998888887764
No 198
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=36.59 E-value=88 Score=19.68 Aligned_cols=22 Identities=5% Similarity=0.241 Sum_probs=19.6
Q ss_pred hhhcCCCCcceeHHHHHHHHHh
Q 037528 28 QSMDKDGNRRVSYREFSDFMSL 49 (158)
Q Consensus 28 ~~~D~d~dG~Is~~El~~~l~~ 49 (158)
+.||.....+|+.+++.++++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4689999999999999999875
No 199
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=36.34 E-value=55 Score=21.95 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC--CCHHHHHHHHHHhCCCCCCc
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH--DENMRTRDFFNQLDIDGSGR 72 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~--~~~~~~~~~~~~lD~d~dG~ 72 (158)
..+.+++..+..+|+....--.+.|+.++|....+.+.. |+..+=+++.+.+... .|.
T Consensus 10 dWsteEii~Vi~F~~~VE~AYE~gV~r~~ll~~Y~~FK~VVpsK~EEKql~r~Fe~~-SGY 69 (88)
T PF05256_consen 10 DWSTEEIIDVINFFNAVEKAYEKGVDREELLDAYRRFKKVVPSKSEEKQLDREFEEQ-SGY 69 (88)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTT-EEHHHHHHHHHHHHHH---HHHHHHHHHHHHCC-SS-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-hCC
Confidence 346677777777787766655566999999999999865 7888888888888764 343
No 200
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=36.21 E-value=81 Score=23.85 Aligned_cols=36 Identities=8% Similarity=-0.020 Sum_probs=28.4
Q ss_pred cCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhC
Q 037528 31 DKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLD 66 (158)
Q Consensus 31 D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD 66 (158)
-.|.+|.++.+++.+.++..+. .+.+.+.++...-|
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 3478899999999999876544 68888888877644
No 201
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=35.99 E-value=16 Score=25.57 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=27.6
Q ss_pred CCcceeHHHHHHHHHhc----CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 037528 34 GNRRVSYREFSDFMSLQ----AHDENMRTRDFFNQLDIDGSGRLDFKEVLTLY 82 (158)
Q Consensus 34 ~dG~Is~~El~~~l~~l----g~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~ 82 (158)
-||.|+.+|...+...+ +. +..+...++..++.-....+++.+++..+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 87 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGL-SPEEAEELIELADELKQEPIDLEELLREL 87 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCG-SCHHHHHHHHHHCHHHHHCCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 57889999887766655 43 45555555555544444456777776544
No 202
>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway. Domain is involved in recognition of N-end rule substrates in yeast Ubr1p
Probab=35.95 E-value=24 Score=22.42 Aligned_cols=21 Identities=29% Similarity=0.830 Sum_probs=17.1
Q ss_pred ccccccC-CcchhhhHhhhCCC
Q 037528 107 MRCFETG-SAAYSICLECFGDK 127 (158)
Q Consensus 107 ~~cfd~~-~~~~~~c~~c~~~~ 127 (158)
++|+++. .....+|.+|+...
T Consensus 14 y~C~tC~~~~~~~iC~~Cf~~~ 35 (71)
T smart00396 14 YRCKTCGLDPTCVLCSDCFRSN 35 (71)
T ss_pred EECcCCCCCCCEeEChHHCCCC
Confidence 7899886 55677999999966
No 203
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.92 E-value=38 Score=30.07 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhcCCCCcceeHHHHHHHHH
Q 037528 20 RRLFNQFFQSMDKDGNRRVSYREFSDFMS 48 (158)
Q Consensus 20 ~~~~~~~F~~~D~d~dG~Is~~El~~~l~ 48 (158)
+.++.-++.+-|.|.||.++..||-+++-
T Consensus 264 i~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 264 IEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred hHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 45577778889999999999999998875
No 204
>PRK04387 hypothetical protein; Provisional
Probab=34.65 E-value=57 Score=21.98 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC--CCHHHHHHHHHHhCCCCCCce
Q 037528 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH--DENMRTRDFFNQLDIDGSGRL 73 (158)
Q Consensus 15 ~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~--~~~~~~~~~~~~lD~d~dG~I 73 (158)
.|.+++-.+..+|+....--..-|+.++|....+.+.. |+..+=+++++++... +|.-
T Consensus 11 WsteEii~Vi~F~~~VE~aYE~gv~re~ll~~Y~~FK~VVpsK~EEKql~reFe~~-SGYS 70 (90)
T PRK04387 11 WSTEEMISVLHFFNAVEKAYEKGVDAEELLDAYRRFKEIVPSKAEEKQIDREFEKV-SGYS 70 (90)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-cCCc
Confidence 45667777777777766555556999999999999865 7888888888887653 4433
No 205
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=34.42 E-value=83 Score=19.29 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=20.6
Q ss_pred ceeHHHHHHHHHhcCC-CCHHHHHHHHHHh
Q 037528 37 RVSYREFSDFMSLQAH-DENMRTRDFFNQL 65 (158)
Q Consensus 37 ~Is~~El~~~l~~lg~-~~~~~~~~~~~~l 65 (158)
.+|.+|+.+.+.+++- |+..++-.++...
T Consensus 9 ~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 9 KLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4677788888888876 7777766666543
No 206
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=33.12 E-value=1.4e+02 Score=28.53 Aligned_cols=63 Identities=8% Similarity=0.262 Sum_probs=49.1
Q ss_pred HHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-----------CCHHHHHHHHHHhCCCC----CCceeHHHHHHHHHH
Q 037528 22 LFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-----------DENMRTRDFFNQLDIDG----SGRLDFKEVLTLYYI 84 (158)
Q Consensus 22 ~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-----------~~~~~~~~~~~~lD~d~----dG~IsfeEFl~l~~~ 84 (158)
++.++|..+-.++.-+++.++|.++|+.-.. ..+..+..++..+..+. .|.++-+-|+.++..
T Consensus 222 eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 222 EIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 4677899998888899999999999985321 26677888888887764 488888888876654
No 207
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=32.76 E-value=1.1e+02 Score=18.55 Aligned_cols=53 Identities=9% Similarity=0.265 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeH
Q 037528 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDF 75 (158)
Q Consensus 15 ~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~Isf 75 (158)
+++.....++.+|..-. +.+.|+..++.+.| +. ++..+-++++.+.. .|-|.+
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L---~v-s~~tvt~ml~~L~~--~GlV~~ 54 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERL---GV-SPPTVTEMLKRLAE--KGLVEY 54 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHH---TS--HHHHHHHHHHHHH--TTSEEE
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHH---CC-ChHHHHHHHHHHHH--CCCEEe
Confidence 45556667888888776 66779988887665 45 77777888887764 344443
No 208
>PF05294 Toxin_5: Scorpion short toxin; InterPro: IPR007958 This family contains various secreted scorpion short toxins which seem to be unrelated to those described in IPR001947 from INTERPRO.; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1SIS_A 1CHL_A.
Probab=31.70 E-value=28 Score=18.69 Aligned_cols=25 Identities=36% Similarity=0.911 Sum_probs=19.7
Q ss_pred cccccccCCcchhhhHhhhCCCCCc
Q 037528 106 CMRCFETGSAAYSICLECFGDKGSL 130 (158)
Q Consensus 106 ~~~cfd~~~~~~~~c~~c~~~~~~~ 130 (158)
|.-||-.+.+.-..|.+|-+++|+.
T Consensus 1 C~pCFTT~p~m~~kC~~CCgg~GkC 25 (32)
T PF05294_consen 1 CMPCFTTDPNMAKKCRDCCGGRGKC 25 (32)
T ss_dssp BCES-TTSTTCHHHHHHHCTTSEEE
T ss_pred CCCcccCChhHHHHHHHHhCCCCeE
Confidence 3468989999999999999988654
No 209
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=31.53 E-value=53 Score=20.99 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHh
Q 037528 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSL 49 (158)
Q Consensus 15 ~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~ 49 (158)
.+.++...+...|... -..|++..+|+..++..
T Consensus 10 ~s~e~~~~~~~ql~Q~--~~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 10 ASAEEADGALIQLSQM--LASGKLRGEEINSLLEA 42 (75)
T ss_pred CCHHHHHHHHHHHHHH--HHcCcccHHHHHHHHHH
Confidence 3455544444444332 25688998888888765
No 210
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=31.15 E-value=1.7e+02 Score=22.14 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 40 YREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 40 ~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
.+|...+|.++|+ ++.+++..++....+ ..+.++.+.....
T Consensus 143 ~~e~~~AL~~LGy-~~~ea~~av~~~~~~---~~~~e~lik~ALk 183 (188)
T PRK14606 143 YHESLEALVSLGY-PEKQAREAVKHVYRE---GMKTSELIKEALK 183 (188)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHhhC---CCCHHHHHHHHHH
Confidence 5788899999999 888888888887543 3577777665443
No 211
>PF02758 PYRIN: PAAD/DAPIN/Pyrin domain; InterPro: IPR004020 Pyrin domain was identified as putative protein-protein interaction domain at the N-terminal region of several proteins thought to function in apoptotic and inflammatory signalling pathways. Using secondary structure prediction and potential-based fold recognition methods, the PYRIN domain is predicted to be a member of the six-helix bundle death domain-fold superfamily that includes death domains (DDs), death effector domains (DEDs), and caspase recruitment domains (CARDs). Members of the death domain-fold superfamily are well established mediators of protein-protein interactions found in many proteins involved in apoptosis and inflammation, indicating further that the PYRIN domains serve a similar function. Comparison of a circular dichroism spectrum of the PYRIN domain of CARD7/DEFCAP/NAC/NALP1 with spectra of several proteins known to adopt the death domain-fold provides experimental support for the structure prediction [] It is found in interferon-inducible proteins, pyrin and myeloid cell nuclear differentiation antigen.; PDB: 2DO9_A 2YU0_A 2KN6_A 1UCP_A 2L6A_A 2KM6_A 1PN5_A 2DBG_A 3QF2_B 2HM2_Q.
Probab=30.80 E-value=93 Score=20.07 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=29.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHH
Q 037528 7 VALAYYNSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDF 46 (158)
Q Consensus 7 ~~~~~~~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~ 46 (158)
....+.+++++++.+.++.....-...+...|+..++..+
T Consensus 4 ~Ll~~Le~L~~~efk~FK~~L~~~~~~~~~~Ip~~~le~a 43 (83)
T PF02758_consen 4 LLLWYLEELSEEEFKRFKWLLKEPVKEGFPPIPRGELEKA 43 (83)
T ss_dssp HHHHHHHTS-HHHHHHHHHHHHSTSSTTTCSSSHCHHHHS
T ss_pred HHHHHHHhCCHHHHHHHHHHhcchhhcCCCCCCHHHHhhC
Confidence 3456778999999999988887556678888887776653
No 212
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=30.31 E-value=1.5e+02 Score=20.52 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=40.2
Q ss_pred HHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHh
Q 037528 26 FFQSMDKDGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYIL 85 (158)
Q Consensus 26 ~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~ 85 (158)
+|-+.-..|+..||.+++..+|...|. +.+..+..+++.+.. .+.+|.+.--...
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g~~k 61 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAGKEK 61 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHhHhh
Confidence 344444567778999999999999999 777777777777632 5778877755443
No 213
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=30.29 E-value=1.9e+02 Score=20.21 Aligned_cols=18 Identities=11% Similarity=0.377 Sum_probs=11.1
Q ss_pred HhccCCHHHHHHHHHHHh
Q 037528 11 YYNSGTDEERRLFNQFFQ 28 (158)
Q Consensus 11 ~~~~~s~~~~~~~~~~F~ 28 (158)
.+..+++++..-++.+.+
T Consensus 30 ~~~~L~~E~~~Fi~~Fi~ 47 (113)
T PF09862_consen 30 WFARLSPEQLEFIKLFIK 47 (113)
T ss_pred hhhcCCHHHHHHHHHHHH
Confidence 345678888666654444
No 214
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=29.93 E-value=1.4e+02 Score=19.49 Aligned_cols=12 Identities=8% Similarity=0.160 Sum_probs=6.4
Q ss_pred eeHHHHHHHHHH
Q 037528 73 LDFKEVLTLYYI 84 (158)
Q Consensus 73 IsfeEFl~l~~~ 84 (158)
.++.+|...+..
T Consensus 53 ~~~~~~~~~l~~ 64 (106)
T cd07316 53 FGLEEYARQFRR 64 (106)
T ss_pred CCHHHHHHHHHH
Confidence 455555555544
No 215
>PLN02223 phosphoinositide phospholipase C
Probab=29.18 E-value=2e+02 Score=25.77 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=41.4
Q ss_pred HHHHHHhhhcCCCCcceeHHHHHHHH---Hhc-CC--CCHHHHHHHHHHhCCCC--------CCceeHHHHHHHHHH
Q 037528 22 LFNQFFQSMDKDGNRRVSYREFSDFM---SLQ-AH--DENMRTRDFFNQLDIDG--------SGRLDFKEVLTLYYI 84 (158)
Q Consensus 22 ~~~~~F~~~D~d~dG~Is~~El~~~l---~~l-g~--~~~~~~~~~~~~lD~d~--------dG~IsfeEFl~l~~~ 84 (158)
.++++|..+- ++.|.++.+.+.++| ... |. .+.++.+.++..+-... .+.++.+.|..++..
T Consensus 17 ~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 17 LILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4667788773 677889999999988 332 22 36666666666543221 256899999987754
No 216
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.92 E-value=19 Score=32.77 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=28.2
Q ss_pred CcchhhHHHHHhhhhhcccccccCCcchhhh
Q 037528 90 PICGRCRIFITNEYFACMRCFETGSAAYSIC 120 (158)
Q Consensus 90 ~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c 120 (158)
++|-.|++|+||+=.++++|=.+.--.++.|
T Consensus 170 t~Cs~C~kFi~gL~kqGyQCqvC~~vvHKkC 200 (694)
T KOG0694|consen 170 TFCSWCQKFIWGLRKQGYQCQVCWRVVHKKC 200 (694)
T ss_pred chhhhhhhheeccCCCceEEeeeeehHhhhh
Confidence 8899999999999778999999888888888
No 217
>COG4476 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.88 E-value=74 Score=21.23 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC--CCHHHHHHHHHHhCCC
Q 037528 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH--DENMRTRDFFNQLDID 68 (158)
Q Consensus 15 ~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~--~~~~~~~~~~~~lD~d 68 (158)
.+.+++.....+|+....--++.|+..+|....+.+.. |+..+=++++..+...
T Consensus 11 WsTEE~~~Vl~Ffn~VE~aYE~gv~~~~ll~~Yr~FK~IVPsK~eEKql~r~FE~~ 66 (90)
T COG4476 11 WSTEEMISVLHFFNAVELAYEKGVDAEDLLGSYRRFKEIVPSKAEEKQLGRDFEKS 66 (90)
T ss_pred ccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcCchHHHHHHhHHHHHh
Confidence 35566666667787776666677999999999998854 7788878888877654
No 218
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=28.77 E-value=67 Score=20.46 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=6.8
Q ss_pred CCceeHHHHHHHHHH
Q 037528 70 SGRLDFKEVLTLYYI 84 (158)
Q Consensus 70 dG~IsfeEFl~l~~~ 84 (158)
.++|+-+||+..+..
T Consensus 39 ~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 39 KKKISREEFVRKLRQ 53 (70)
T ss_pred HCCCCHHHHHHHHHH
Confidence 334555555444433
No 219
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=28.66 E-value=1.3e+02 Score=21.95 Aligned_cols=27 Identities=22% Similarity=0.573 Sum_probs=10.6
Q ss_pred HHHHHhh--hcCCCCcce-eHHHHHHHHHh
Q 037528 23 FNQFFQS--MDKDGNRRV-SYREFSDFMSL 49 (158)
Q Consensus 23 ~~~~F~~--~D~d~dG~I-s~~El~~~l~~ 49 (158)
+.++|.. ++.+..|.- .+.++..+|..
T Consensus 22 ~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ 51 (141)
T PF12588_consen 22 FTQMFDQPPYNADPTGNPPQIRDYDEMLQL 51 (141)
T ss_pred HHHHHhCcccccCCCCCccccccHHHHHHH
Confidence 4444444 223333333 33344444443
No 220
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=27.68 E-value=93 Score=22.85 Aligned_cols=32 Identities=3% Similarity=0.140 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhcCCCCcceeHHHHHHHHHh
Q 037528 18 EERRLFNQFFQSMDKDGNRRVSYREFSDFMSL 49 (158)
Q Consensus 18 ~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~ 49 (158)
.++..+.+-....|..+.++||.+|++.++-.
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 34666777778888888889999999987654
No 221
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=27.35 E-value=76 Score=22.42 Aligned_cols=27 Identities=7% Similarity=-0.016 Sum_probs=12.5
Q ss_pred eeHHHHHHHHHhcCC-CCHHHHHHHHHH
Q 037528 38 VSYREFSDFMSLQAH-DENMRTRDFFNQ 64 (158)
Q Consensus 38 Is~~El~~~l~~lg~-~~~~~~~~~~~~ 64 (158)
|...-+....+..|+ +++.++...+..
T Consensus 84 I~~~ll~q~A~~~gi~vsd~ev~~~i~~ 111 (154)
T PF13624_consen 84 IDQKLLLQEAKKLGISVSDAEVDDAIKQ 111 (154)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 444445555555566 556555555444
No 222
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=26.82 E-value=29 Score=27.09 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=40.2
Q ss_pred HhhhcC-CCCcceeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 27 FQSMDK-DGNRRVSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 27 F~~~D~-d~dG~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
|-.+|+ -.||++|-.|+.-+ ++ .+ |-+.=+..+|...|.|+||.|+.+|+-.-+..
T Consensus 193 f~qld~~p~d~~~sh~el~pl-~a-p~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gi 250 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPL-RA-PLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGI 250 (259)
T ss_pred eccccCCCccccccccccccc-cC-CcccHHhhchhhhhcccCCCCCceeHHHhhcccCc
Confidence 445554 35899998888654 22 22 44555677999999999999999999766643
No 223
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=26.80 E-value=1.8e+02 Score=19.78 Aligned_cols=46 Identities=7% Similarity=0.047 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHH
Q 037528 16 TDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFF 62 (158)
Q Consensus 16 s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~ 62 (158)
+.+......+....+=...+|.++..+++.+....|+ +..++..++
T Consensus 43 ~~e~~~~~~~~i~~~~~~~~~~~~~~~i~~~r~~~gl-tq~~lA~~l 88 (127)
T TIGR03830 43 DPEESKRNSAALADFYRKVDGLLTPPEIRRIRKKLGL-SQREAAELL 88 (127)
T ss_pred cHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHcCC-CHHHHHHHh
Confidence 3344333333333333456778888889888888887 666665544
No 224
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=26.75 E-value=1.2e+02 Score=19.22 Aligned_cols=30 Identities=10% Similarity=0.078 Sum_probs=21.3
Q ss_pred ceeHHHHHHHHHhcCC-CCHHHHHHHHHHhC
Q 037528 37 RVSYREFSDFMSLQAH-DENMRTRDFFNQLD 66 (158)
Q Consensus 37 ~Is~~El~~~l~~lg~-~~~~~~~~~~~~lD 66 (158)
.-+.+|+...|...|+ .|...+..-++++.
T Consensus 19 i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp --SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 4468899999999999 88888888887764
No 225
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=26.75 E-value=85 Score=28.93 Aligned_cols=65 Identities=22% Similarity=0.425 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC-CCHHH---------HHHHHHHhCCCCC------------------
Q 037528 19 ERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH-DENMR---------TRDFFNQLDIDGS------------------ 70 (158)
Q Consensus 19 ~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~---------~~~~~~~lD~d~d------------------ 70 (158)
+.--.++++..+|.+-++..+..++.+...+++. +...+ -..++..+|.+++
T Consensus 435 ~~c~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~ 514 (975)
T KOG2419|consen 435 EECFAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPF 514 (975)
T ss_pred hhhhhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccc
Confidence 3334567888999999999999998888777765 32221 3457888898888
Q ss_pred -----CceeHHHHHHHHH
Q 037528 71 -----GRLDFKEVLTLYY 83 (158)
Q Consensus 71 -----G~IsfeEFl~l~~ 83 (158)
|.++.+|.+.++.
T Consensus 515 ~~~s~~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 515 LKKSFGVVTVDELVALLA 532 (975)
T ss_pred cccccCeeEHHHHHHHHH
Confidence 9999999988766
No 226
>PF13834 DUF4193: Domain of unknown function (DUF4193)
Probab=26.61 E-value=18 Score=24.83 Aligned_cols=20 Identities=35% Similarity=0.977 Sum_probs=13.8
Q ss_pred hhcccccc--------cCCcchhhhHhh
Q 037528 104 FACMRCFE--------TGSAAYSICLEC 123 (158)
Q Consensus 104 ~~~~~cfd--------~~~~~~~~c~~c 123 (158)
|+|..||- .+.+|...|.+|
T Consensus 71 FTCssCFLV~HRSqLa~~~~g~~iC~DC 98 (99)
T PF13834_consen 71 FTCSSCFLVHHRSQLAREKDGQPICRDC 98 (99)
T ss_pred eeeeeeeeEechhhhccccCCCEecccc
Confidence 46778872 345678888877
No 227
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=26.60 E-value=30 Score=28.90 Aligned_cols=52 Identities=23% Similarity=0.429 Sum_probs=31.9
Q ss_pred CcchhhHHHHH-hhhhhcccccccCCcchhhhHhhhCCCCCccccCCc------------ceeehhhHhhH
Q 037528 90 PICGRCRIFIT-NEYFACMRCFETGSAAYSICLECFGDKGSLNHNHVR------------SYFVDNFSLLE 147 (158)
Q Consensus 90 ~~c~~c~~~l~-~~~~~~~~cfd~~~~~~~~c~~c~~~~~~~~h~~~~------------~~f~~~~~~~~ 147 (158)
.-|+.|-..+. .++..|..|- .+++|.-|+.+. .+.-.|++ .+|..||+..+
T Consensus 6 ~hCdvC~~d~T~~~~i~C~eC~-----~~DLC~pCF~~g-~~tg~H~pyH~YRiietnsypI~~e~WgadE 70 (432)
T COG5114 6 IHCDVCFLDMTDLTFIKCNECP-----AVDLCLPCFVNG-IETGVHSPYHGYRIIETNSYPIGEEGWGADE 70 (432)
T ss_pred eeehHHHHhhhcceeeeeeccc-----ccceehhhhhcc-ccccccCCCCCeeEeeccCccccCCCcCchH
Confidence 45777766554 4455555554 588999999865 44322222 56777776655
No 228
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=26.54 E-value=20 Score=29.68 Aligned_cols=44 Identities=27% Similarity=0.559 Sum_probs=29.8
Q ss_pred cccccCCc---------chhhhHhhhC---CCCCccccCCcceeehhhHhhHhhhcC
Q 037528 108 RCFETGSA---------AYSICLECFG---DKGSLNHNHVRSYFVDNFSLLESLRKK 152 (158)
Q Consensus 108 ~cfd~~~~---------~~~~c~~c~~---~~~~~~h~~~~~~f~~~~~~~~~~~~~ 152 (158)
+||||+.. |.-+|..|-+ +-|.-+- ....+=||||+..+=.|..
T Consensus 22 ~CaDCga~~P~W~S~nlGvfiCi~CagvHRsLGvhiS-~VKSitLD~wt~~~l~~m~ 77 (319)
T COG5347 22 KCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHIS-KVKSLTLDNWTEEELRRME 77 (319)
T ss_pred ccccCCCCCCceEecccCeEEEeecchhhhcccccee-eeeeeecccCCHHHHHHHH
Confidence 78888744 6778888876 3332222 4558889999987766654
No 229
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=26.53 E-value=1.7e+02 Score=18.50 Aligned_cols=43 Identities=5% Similarity=0.023 Sum_probs=29.2
Q ss_pred HHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhC
Q 037528 23 FNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLD 66 (158)
Q Consensus 23 ~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD 66 (158)
+..+|-.+=....+.|...++.+++..+|+ ++.-++.-+..+-
T Consensus 6 i~tl~Gdy~~~~g~~i~~~~Li~ll~~~Gv-~e~avR~alsRl~ 48 (70)
T PF07848_consen 6 IVTLLGDYLRPRGGWIWVASLIRLLAAFGV-SESAVRTALSRLV 48 (70)
T ss_dssp HHHHHHHHCCTTTS-EEHHHHHHHHCCTT---HHHHHHHHHHHH
T ss_pred hHHHHHHHhccCCCceeHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 334555555677799999999999999998 7777666555543
No 230
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=25.92 E-value=2.4e+02 Score=20.74 Aligned_cols=58 Identities=12% Similarity=0.211 Sum_probs=32.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhh-cC-CCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHh
Q 037528 3 ALRKVALAYYNSGTDEERRLFNQFFQSM-DK-DGNRRVSYREFSDFMSLQAHDENMRTRDFFNQL 65 (158)
Q Consensus 3 el~k~~~~~~~~~s~~~~~~~~~~F~~~-D~-d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~l 65 (158)
|+.+........+++++.+++.+.|+.+ |. ..+| .+. .++...+|. |.+-.+++..+.
T Consensus 5 efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G-~sE---eeii~~LG~-P~~iA~~i~~~~ 64 (181)
T PF08006_consen 5 EFLNELEKYLKKLPEEEREEILEYYEEYFDDAGEEG-KSE---EEIIAELGS-PKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCC-CCH---HHHHHHcCC-HHHHHHHHHHhh
Confidence 5666666666778888877765555532 21 1222 233 455677776 444455555443
No 231
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=25.88 E-value=1.5e+02 Score=24.59 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=7.0
Q ss_pred CceeHHHHHHHHHH
Q 037528 71 GRLDFKEVLTLYYI 84 (158)
Q Consensus 71 G~IsfeEFl~l~~~ 84 (158)
|.|+.+|=+.++..
T Consensus 301 G~itReeal~~v~~ 314 (343)
T TIGR03573 301 GRITREEAIELVKE 314 (343)
T ss_pred CCCCHHHHHHHHHH
Confidence 45555555554444
No 232
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.75 E-value=1.2e+02 Score=27.53 Aligned_cols=64 Identities=17% Similarity=0.296 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC---------CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 20 RRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH---------DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 20 ~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~---------~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
...++-+|...|. ++|.++.+++..++...-. ++.+....++.+.|.+..|.+.++++..++..
T Consensus 17 d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 17 DDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred hHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHh
Confidence 3457778999998 9999999999988875411 24444566888899998898888888777653
No 233
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=25.19 E-value=1.9e+02 Score=18.55 Aligned_cols=37 Identities=8% Similarity=0.091 Sum_probs=22.3
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCC
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAH 52 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~ 52 (158)
.++...-+.+++++...-. .+..|+.|+.++...+|.
T Consensus 32 ~f~~~~yedl~diy~~V~~--K~~fS~sEm~aI~~ELG~ 68 (71)
T PF06569_consen 32 DFSEEKYEDLKDIYEMVMS--KDSFSPSEMQAIAEELGQ 68 (71)
T ss_pred hCChhhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHh
Confidence 3555555666666665443 445777777777666654
No 234
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=25.00 E-value=1.2e+02 Score=15.89 Aligned_cols=25 Identities=8% Similarity=0.283 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhhcCCCCcceeHHHHHHHHH
Q 037528 18 EERRLFNQFFQSMDKDGNRRVSYREFSDFMS 48 (158)
Q Consensus 18 ~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~ 48 (158)
++++.+++.+. .|.||.+||...-.
T Consensus 3 ~~L~~L~~l~~------~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 3 DRLEKLKELYD------KGEISEEEYEQKKA 27 (31)
T ss_pred HHHHHHHHHHH------cCCCCHHHHHHHHH
Confidence 34455555554 37788888876543
No 235
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=24.52 E-value=2.7e+02 Score=21.31 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 037528 40 YREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLTLYY 83 (158)
Q Consensus 40 ~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~ 83 (158)
.+|...+|.++|+ ++.++...+...... +..++.++.+....
T Consensus 155 ~~ea~~AL~~LGy-~~~ea~~av~~~~~~-~~~~~~e~lir~AL 196 (203)
T PRK14602 155 FRDALAGLANLGY-GEEEARPVLKEVLEE-EPDLDVGGALRAAL 196 (203)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHhhc-CCCCCHHHHHHHHH
Confidence 4688899999999 888888888887432 23467787766443
No 236
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=24.43 E-value=56 Score=23.98 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=23.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHh
Q 037528 7 VALAYYNSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSL 49 (158)
Q Consensus 7 ~~~~~~~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~ 49 (158)
.+..++.+++++++..++++++.+..- =+.+|+.++|+.
T Consensus 13 ev~~~~~~Lt~eeK~~lkev~~~~~~~----~~~de~i~~LK~ 51 (154)
T PF05823_consen 13 EVVEFYKNLTPEEKAELKEVAKNYAKF----KNEDEMIAALKE 51 (154)
T ss_dssp HHHHHHHH--TTTHHHHHHHHTT-----------TTHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcccc----CCHHHHHHHHHH
Confidence 446677889999999999999987532 245566666654
No 237
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=23.87 E-value=2.3e+02 Score=18.85 Aligned_cols=50 Identities=10% Similarity=0.042 Sum_probs=27.7
Q ss_pred eeHHHHHHHHHhcCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHHhhc
Q 037528 38 VSYREFSDFMSLQAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYYILKS 87 (158)
Q Consensus 38 Is~~El~~~l~~lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~~~~~ 87 (158)
||..||..+-+..+. .+..+++.++..+-.+.-.-.+-++=..++..+.+
T Consensus 15 iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~ 65 (85)
T PF11116_consen 15 ITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAK 65 (85)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 566666666666666 56666666666554443333444444445554443
No 238
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=23.65 E-value=3.7e+02 Score=21.56 Aligned_cols=50 Identities=12% Similarity=0.160 Sum_probs=34.8
Q ss_pred hccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhC
Q 037528 12 YNSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLD 66 (158)
Q Consensus 12 ~~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD 66 (158)
+..+|=.+++.++.+++.++.+ +|.++..++.+ .+|. +..-+.+.++.+.
T Consensus 174 i~tLSySEleAv~~IL~~L~~~-egrlse~eLAe---rlGV-SRs~ireAlrkLE 223 (251)
T TIGR02787 174 INTLSYSELEAVEHIFEELDGN-EGLLVASKIAD---RVGI-TRSVIVNALRKLE 223 (251)
T ss_pred HHhccHhHHHHHHHHHHHhccc-cccccHHHHHH---HHCC-CHHHHHHHHHHHH
Confidence 3567778888888888888642 57888777764 4465 6666666666654
No 239
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=23.56 E-value=1.8e+02 Score=25.45 Aligned_cols=60 Identities=13% Similarity=0.274 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhcCCCCcceeHHHHHHHHHh-cCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 037528 20 RRLFNQFFQSMDKDGNRRVSYREFSDFMSL-QAH-DENMRTRDFFNQLDIDGSGRLDFKEVLTLYY 83 (158)
Q Consensus 20 ~~~~~~~F~~~D~d~dG~Is~~El~~~l~~-lg~-~~~~~~~~~~~~lD~d~dG~IsfeEFl~l~~ 83 (158)
.+.++.+-+.+|-|.+|.|+.+|=..+|+. +.+ -+...-.+-|.. .|..|+.++.-..+.
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~ 128 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWK 128 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHH
Confidence 456788889999999999999998888875 333 222222223432 456788888766554
No 240
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=23.42 E-value=93 Score=26.21 Aligned_cols=30 Identities=17% Similarity=0.470 Sum_probs=25.2
Q ss_pred HHHHHHHhhhcCCCCcceeHHHHHHHHHhc
Q 037528 21 RLFNQFFQSMDKDGNRRVSYREFSDFMSLQ 50 (158)
Q Consensus 21 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~l 50 (158)
+-.+.+|+.-|.|+|-.|+..|+...|..-
T Consensus 370 kC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 370 KCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred HHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 346778999999999999999999887643
No 241
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=22.83 E-value=1.6e+02 Score=18.82 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCC-CCCceeHHHHHHHH
Q 037528 40 YREFSDFMSLQAHDENMRTRDFFNQLDID-GSGRLDFKEVLTLY 82 (158)
Q Consensus 40 ~~El~~~l~~lg~~~~~~~~~~~~~lD~d-~dG~IsfeEFl~l~ 82 (158)
..++...|.... .+.+.+.+.+..++.+ --|.++-+|++.++
T Consensus 44 i~~le~~L~G~~-~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEALIGCP-YDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHHTTCB-SSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 667777764433 4888899888887554 34678888888764
No 242
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=22.40 E-value=1.9e+02 Score=19.45 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=8.3
Q ss_pred CcchhhhHhhhC
Q 037528 114 SAAYSICLECFG 125 (158)
Q Consensus 114 ~~~~~~c~~c~~ 125 (158)
.++.+.|+.|.-
T Consensus 89 pss~~iC~~C~l 100 (104)
T TIGR00269 89 PTSGRICKACKF 100 (104)
T ss_pred cCCccccHhhhh
Confidence 456678888853
No 243
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=22.15 E-value=1.8e+02 Score=23.63 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=35.5
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHH
Q 037528 13 NSGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQ 64 (158)
Q Consensus 13 ~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~ 64 (158)
..++.+|++.++.-|+ .+-+|+..--+.+-..+|+ .+.+|+-+|..
T Consensus 251 TAFtaeQL~RLK~EF~-----enRYlTEqRRQ~La~ELgL-NEsQIKIWFQN 296 (342)
T KOG0493|consen 251 TAFTAEQLQRLKAEFQ-----ENRYLTEQRRQELAQELGL-NESQIKIWFQN 296 (342)
T ss_pred ccccHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHhCc-CHHHhhHHhhh
Confidence 3578899999999887 4567887666677777887 88888888864
No 244
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=21.46 E-value=62 Score=28.64 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=37.8
Q ss_pred HHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q 037528 23 FNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQLDIDGSGRLDFKEVLT 80 (158)
Q Consensus 23 ~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~lD~d~dG~IsfeEFl~ 80 (158)
...-|..+|+|..|.|...++..++..-+..+-.+.+.+....-.|.+|.++|..+..
T Consensus 26 ~~~~~~dL~~Dl~dgv~l~qlLe~~~kd~~g~yn~~p~tr~h~~envs~~le~ik~kg 83 (612)
T COG5069 26 GQKEFGDLDTDLKDGVKLAQLLEALQKDNAGEYNETPETRIHVMENVSGRLEFIKGKG 83 (612)
T ss_pred ccHHHhhhccccccHHHHHHHHHHhhhccccccCCCHHHHHHHhhccccceeeeccCC
Confidence 4556677899999999998888888765331111222333333445778888887765
No 245
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=21.35 E-value=2.1e+02 Score=18.83 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=34.6
Q ss_pred HhhhcCCCCcceeHHHHHHHHHhcCCCCHHH-HH---HHHHHhCCCCCCceeHHHHHHHHHH
Q 037528 27 FQSMDKDGNRRVSYREFSDFMSLQAHDENMR-TR---DFFNQLDIDGSGRLDFKEVLTLYYI 84 (158)
Q Consensus 27 F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~-~~---~~~~~lD~d~dG~IsfeEFl~l~~~ 84 (158)
|...|... ...+.+++.+++..++. +..+ +. ..++.++.+....++-+|.+.++..
T Consensus 26 ~~~idi~~-~~~~~~~l~~~~~~~~~-~~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~ 85 (105)
T cd02977 26 YEFIDYLK-EPPTKEELKELLAKLGL-GVEDLFNTRGTPYRKLGLADKDELSDEEALELMAE 85 (105)
T ss_pred cEEEeecc-CCCCHHHHHHHHHhcCC-CHHHHHhcCCchHHHcCCccccCCCHHHHHHHHHh
Confidence 33444433 44778899999988875 2222 21 3455555443456888999888864
No 246
>cd08321 Pyrin_ASC-like Pyrin Death Domain found in ASC. Pyrin Death Domain found in ASC (Apoptosis-associated speck-like protein containing a CARD) and similar proteins. ASC is an adaptor molecule that functions in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. ASC contains two domains from the Death Domain (DD) superfamily, an N-terminal pyrin-like domain and a C-terminal Caspase activation and recruitment domain (CARD). Through these 2 domains, ASC serves as an adaptor for inflammasome integrity and oligomerizes to form supramolecular assemblies. Other members of this subfamily are associated with ATPase domains and their function remains unknown. In general, Pyrin is a subfamily of the DD superfamily and functions in several signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=20.90 E-value=1.5e+02 Score=19.25 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=25.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCCCcceeHHHHHH
Q 037528 7 VALAYYNSGTDEERRLFNQFFQSMDKDGNRRVSYREFSD 45 (158)
Q Consensus 7 ~~~~~~~~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~ 45 (158)
....+.+.+++++...++......-..|-..|+..++..
T Consensus 3 ~Ll~~Le~L~~~ElkkFK~~L~~~~~~g~~~Ip~~~le~ 41 (82)
T cd08321 3 LLLDALEDLEEDELKKFKWKLRDIPLEGFPRIPRGELEN 41 (82)
T ss_pred HHHHHHHHhCHHHHHHHHHHHhhhhhccCCCCChHhhcc
Confidence 345666788999988887766643333555677666543
No 247
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=20.80 E-value=2.7e+02 Score=22.09 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=37.1
Q ss_pred CCcceeHHHHHHHHHhcCC-------CCHHHHHHHHHHhCCCCC-CceeHHHHHHHH
Q 037528 34 GNRRVSYREFSDFMSLQAH-------DENMRTRDFFNQLDIDGS-GRLDFKEVLTLY 82 (158)
Q Consensus 34 ~dG~Is~~El~~~l~~lg~-------~~~~~~~~~~~~lD~d~d-G~IsfeEFl~l~ 82 (158)
++|.+-.+.+.+++..++. |.+....++++.+.++-+ |.|+++|-+.+=
T Consensus 167 ~~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~VNL~NI~~~evi~LE 223 (237)
T TIGR03849 167 EKGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVISLE 223 (237)
T ss_pred CCCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCcccccCCHHHHHHHH
Confidence 3456777778888887754 356667778898999988 899999987753
No 248
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=20.77 E-value=2.3e+02 Score=21.84 Aligned_cols=45 Identities=9% Similarity=0.188 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCcceeHHHHHHHHHhcCCCCHHHHHHHHHH
Q 037528 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFSDFMSLQAHDENMRTRDFFNQ 64 (158)
Q Consensus 14 ~~s~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~~~~ 64 (158)
.++.+|...+...|. ..-++.+.+-..+.+.+|+ .+.+|.-+|..
T Consensus 56 Rlt~eQ~~~LE~~F~-----~~~~L~p~~K~~LAk~LgL-~pRQVavWFQN 100 (198)
T KOG0483|consen 56 RLTSEQVKFLEKSFE-----SEKKLEPERKKKLAKELGL-QPRQVAVWFQN 100 (198)
T ss_pred cccHHHHHHhHHhhc-----cccccChHHHHHHHHhhCC-ChhHHHHHHhh
Confidence 467888888888887 4567888998888899998 77777777754
No 249
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=20.66 E-value=3.7e+02 Score=20.09 Aligned_cols=32 Identities=9% Similarity=0.190 Sum_probs=19.7
Q ss_pred CCceeHHHHHHHHHHhhcCCCcchhhHHHHHhhhh
Q 037528 70 SGRLDFKEVLTLYYILKSRRPICGRCRIFITNEYF 104 (158)
Q Consensus 70 dG~IsfeEFl~l~~~~~~~~~~c~~c~~~l~~~~~ 104 (158)
..++++++|+........+..+- .++|.++|-
T Consensus 147 ~~kmt~~~Fi~~~~~~~~~~~~~---~~~L~~iY~ 178 (185)
T cd00171 147 KKKMTLEDFIKNLRGINDGEDFP---REFLKELYD 178 (185)
T ss_pred CCCCCHHHHHHHHhcccCCCCCC---HHHHHHHHH
Confidence 44677777777776665554332 566666653
No 250
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.61 E-value=2.2e+02 Score=19.88 Aligned_cols=38 Identities=11% Similarity=0.336 Sum_probs=21.6
Q ss_pred HHHHHHHhcCC-C---CHHHH--HHHHHHhCCCCCCceeHHHHHHHH
Q 037528 42 EFSDFMSLQAH-D---ENMRT--RDFFNQLDIDGSGRLDFKEVLTLY 82 (158)
Q Consensus 42 El~~~l~~lg~-~---~~~~~--~~~~~~lD~d~dG~IsfeEFl~l~ 82 (158)
-|.++++++|+ | ...++ +++++.+ ..|.|+-+|-+.++
T Consensus 77 kld~vlramgy~p~~e~~~~i~~~~i~~ql---e~Gei~peeA~~~L 120 (122)
T COG3877 77 KLDEVLRAMGYNPDSENSVNIGKKKIIDQL---EKGEISPEEAIKML 120 (122)
T ss_pred HHHHHHHHcCCCCCCCChhhhhHHHHHHHH---HcCCCCHHHHHHHh
Confidence 46667777777 4 12222 3355555 34667777766554
No 251
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.42 E-value=50 Score=28.20 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=27.3
Q ss_pred cCCCcchhhHHHHHhhhhhcccccccCCcchhhh
Q 037528 87 SRRPICGRCRIFITNEYFACMRCFETGSAAYSIC 120 (158)
Q Consensus 87 ~~~~~c~~c~~~l~~~~~~~~~cfd~~~~~~~~c 120 (158)
++|..|.-|.+-+||+=.++++|.|+.---++-|
T Consensus 139 nrr~~c~ic~d~iwglgrqgyrcinckl~vhkkc 172 (593)
T KOG0695|consen 139 NRRAYCGICSDRIWGLGRQGYRCINCKLLVHKKC 172 (593)
T ss_pred ccceeeeechhhhhhcccccceeecceeehhhhh
Confidence 3568899999999999999999998765444443
No 252
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=20.25 E-value=22 Score=20.14 Aligned_cols=18 Identities=28% Similarity=0.639 Sum_probs=10.1
Q ss_pred ccccc-ccCCcchhhhHhh
Q 037528 106 CMRCF-ETGSAAYSICLEC 123 (158)
Q Consensus 106 ~~~cf-d~~~~~~~~c~~c 123 (158)
.|+.| |+++++.-.|..|
T Consensus 14 rFri~~d~~~~G~~~C~~C 32 (40)
T PF08273_consen 14 RFRIFDDKDGRGTWICRQC 32 (40)
T ss_dssp TEEEETT----S-EEETTT
T ss_pred ccccCcCcccCCCEECCCC
Confidence 35866 6688899999888
No 253
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=20.10 E-value=2.4e+02 Score=17.62 Aligned_cols=49 Identities=20% Similarity=0.141 Sum_probs=26.4
Q ss_pred eHHHHHHHHHhcCC-C----CHHHHHHHHHHhC-CCCCCceeHHHHHHHHHHhhc
Q 037528 39 SYREFSDFMSLQAH-D----ENMRTRDFFNQLD-IDGSGRLDFKEVLTLYYILKS 87 (158)
Q Consensus 39 s~~El~~~l~~lg~-~----~~~~~~~~~~~lD-~d~dG~IsfeEFl~l~~~~~~ 87 (158)
|.-+++.+|++.|. . ...+++-|-.+++ .-..|-|+-++|+.....+..
T Consensus 3 tlyDVqQLLK~fG~~IY~gdr~~DielM~~El~~Ly~~~lidk~~y~~A~liL~~ 57 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYVGDRLWDIELMEIELKELYKSGLIDKKEYLTAKLILRR 57 (62)
T ss_dssp SHHHHHHHHHTTS-----S-HHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCEEEEeCChHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34578888888887 2 1122222211111 013578999999998877654
Done!