BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037529
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 32/46 (69%)
Query: 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCR 116
G ECAVCL E+E + AR +P C HGFH +C D WL HS CP+CR
Sbjct: 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA 117
T C VC+ + ES Q R++P CNH FH +C D WL + CP+CRA
Sbjct: 24 TLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRA 68
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 64 SGKELVMGT--ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL 119
SG E +G+ EC VC ++ + R +P CNH FH C WL +H CPVCR L
Sbjct: 6 SGTEEHVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF 123
+C +CL +E + R +P C H FH C D WL + CP+CR +++
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 66 KELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVC 115
KEL + CAVCL++ + + P C H FH +C WL VCP+C
Sbjct: 10 KELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 66 KELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFN 125
K+L EC +C+D A L+ C H F +C D W +H CP+CR ++
Sbjct: 10 KQLTDEEECCICMDGR-----ADLILPCAHSFCQKCIDKWSDRHRNCPICRLQM----TG 60
Query: 126 ALESDNP 132
A ES P
Sbjct: 61 ANESSGP 67
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 53 SASELDKLPKI--SGKELVMGTE--CAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK 108
S +D LP+I + +G E C +C E A +P C+H FH C WL K
Sbjct: 18 SKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQK 76
Query: 109 HSVCPVCR 116
CPVCR
Sbjct: 77 SGTCPVCR 84
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Query: 31 SNDNDNNGDVRLPVKAAAEGGLSASEL--DKLPKISGKELVMGTECAVCLDEVESEQPAR 88
S N G R VK L A ++ D + + EC SE+
Sbjct: 11 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 70
Query: 89 LVPGCNHGFHLQCADSWLSKHSVCPV 114
CNH FH C WL VCP+
Sbjct: 71 AWGVCNHAFHFHCISRWLKTRQVCPL 96
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Query: 31 SNDNDNNGDVRLPVKAAAEGGLSASEL--DKLPKISGKELVMGTECAVCLDEVESEQPAR 88
S N G R VK L A ++ D + + EC SE+
Sbjct: 9 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 68
Query: 89 LVPGCNHGFHLQCADSWLSKHSVCPV 114
CNH FH C WL VCP+
Sbjct: 69 AWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 34 NDNNGDVRLPVKAAAEGGLSASEL--DKLPKISGKELVMGTECAVCLDEVESEQPARLVP 91
N G R VK L A ++ D + + EC SE+
Sbjct: 4 NSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG 63
Query: 92 GCNHGFHLQCADSWLSKHSVCPV 114
CNH FH C WL VCP+
Sbjct: 64 VCNHAFHFHCISRWLKTRQVCPL 86
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 41 RLPVKAAAEGGLSASEL--DKLPKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFH 98
R VK + SA ++ D + + EC SE+ CNH FH
Sbjct: 13 RFEVKKSNASAQSAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 72
Query: 99 LQCADSWLSKHSVCPV 114
C WL VCP+
Sbjct: 73 FHCISRWLKTRQVCPL 88
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 34 NDNNGDVRLPVKAAAEGGLSASEL--DKLPKISGKELVMGTECAVCLDEVESEQPARLVP 91
N G R VK L A ++ D + + EC SE+
Sbjct: 23 NSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG 82
Query: 92 GCNHGFHLQCADSWLSKHSVCPV 114
CNH FH C WL VCP+
Sbjct: 83 VCNHAFHFHCISRWLKTRQVCPL 105
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Query: 31 SNDNDNNGDVRLPVKAAAEGGLSASEL--DKLPKISGKELVMGTECAVCLDEVESEQPAR 88
S N G R VK L A ++ D + EC SE+
Sbjct: 9 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIXDLCIECQANQASATSEECTV 68
Query: 89 LVPGCNHGFHLQCADSWLSKHSVCPV 114
CNH FH C WL VCP+
Sbjct: 69 AWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 33.1 bits (74), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPV 114
EC SE+ CNH FH C WL VCP+
Sbjct: 37 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 78
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 74 CAVCLDEV-ESEQPARLV--PGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNAL 127
C +C+D E Q RL+ C H F QC L + CP CR K++ ++ +
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 69
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 32.3 bits (72), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNALE 128
+ C +CL++ + A C H F C W+ ++ CP+C+ ++S + +E
Sbjct: 3 TVAERCPICLEDPSNYSMAL---PCLHAFCYVCITRWIRQNPTCPLCKVPVES-VVHTIE 58
Query: 129 SDN 131
SD+
Sbjct: 59 SDS 61
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 74 CAVCLDEV-ESEQPARLVPG--CNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNAL 127
C +C+D E Q RL+ C H F QC L + CP CR K++ ++ +
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 66
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 74 CAVCLDEV-ESEQPARLVPG--CNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNAL 127
C +C+D E Q RL+ C H F QC L + CP CR K++ ++ +
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 131
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 74 CAVCLDEV-ESEQPARLVPG--CNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNAL 127
C +C+D E Q RL+ C H F QC L + CP CR K++ ++ +
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 62
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 92 GCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF 124
C H F C + W+ + CP+CR + S +
Sbjct: 70 NCAHSFCSYCINEWMKRKIECPICRKDIKSKTY 102
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 92 GCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF 124
C H F C + W+ + CP+CR + S +
Sbjct: 70 NCAHSFCSYCINEWMKRKIECPICRKDIKSKTY 102
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 92 GCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF 124
C H F C + W+ + CP+CR + S +
Sbjct: 81 NCAHSFCSYCINEWMKRKIECPICRKDIKSKTY 113
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 74 CAVCLDEV-ESEQPARLV--PGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120
C +C+D E Q RL+ C H F QC L + CP CR K++
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 74 CAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCR 116
C C E + E + CNH FH C W+ +++ CP+C+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVC 115
E V C +CL+++ + + V C H H C + L + CP+C
Sbjct: 1 ENVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 74 CAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS----VCPVCRAK 118
C+ C D+ ++ C+ GFH++C D L++ +C +CR +
Sbjct: 62 CSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRPR 110
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 29.3 bits (64), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 74 CAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS----VCPVCRAK 118
C+ C D+ ++ C+ GFH++C D L++ +C +CR +
Sbjct: 64 CSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRPR 112
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVC 115
C +C E A ++P C+H + C +LS + CP C
Sbjct: 24 RCGICF---EYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 28.9 bits (63), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 74 CAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVC 115
C +CL+++ + + V C H H C + L + CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2AKJ|A Chain A, Structure Of Spinach Nitrite Reductase
Length = 608
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 103 DSWLSKHSVCPVCRAKLDS 121
D+W+S V PVC+A L++
Sbjct: 323 DAWVSAEDVVPVCKAMLEA 341
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 74 CAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSV-CPVCRAKLD 120
C +C +++ + ARL P C+ C WL++ CP CRA L
Sbjct: 25 CFICXEKL---RDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69
>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
pdb|1A4I|B Chain B, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
Length = 301
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 20 FIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKLPKISGKELVM 70
F L++L + D D+N + + +KAA E G+ A+ + KLP+ + + VM
Sbjct: 34 FTPRLAILQVGNRD-DSNLYINVKLKAAEEIGIKATHI-KLPRTTTESEVM 82
>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIA|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIB|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIB|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIG|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
pdb|1DIG|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
Length = 306
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 20 FIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKLPKISGKELVM 70
F L++L + D D+N + + +KAA E G+ A+ + KLP+ + + VM
Sbjct: 34 FTPRLAILQVGNRD-DSNLYINVKLKAAEEIGIKATHI-KLPRTTTESEVM 82
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 44 VKAAAEGGLSASELDKLPKISGKELVMGT-----ECA 75
+ A E G+++ +L LP GK LV+G ECA
Sbjct: 266 IPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECA 302
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 44 VKAAAEGGLSASELDKLPKISGKELVMGT-----ECA 75
+ A E G+++ +L LP GK LV+G ECA
Sbjct: 266 IPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECA 302
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 44 VKAAAEGGLSASELDKLPKISGKELVMGT-----ECA 75
+ A E G+++ +L LP GK LV+G ECA
Sbjct: 266 IPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECA 302
>pdb|3AMU|A Chain A, Crystal Structure Of The Tias-Trna(Ile2)-Ampcpp-Agmatine
Complex
Length = 440
Score = 26.2 bits (56), Expect = 5.8, Method: Composition-based stats.
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 99 LQCADSWLSKHSVCPVCRAKLDS 121
++ A+ W+ K+ +CP C +++S
Sbjct: 359 VELAEIWVEKNPICPSCGRRMES 381
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 52 LSASELDKLPKISGKELVMGTECAVCLDEVESEQPA 87
L +DK+ S ++V+ +CA LD+++ + PA
Sbjct: 43 LGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPA 78
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 52 LSASELDKLPKISGKELVMGTECAVCLDEVESEQPA 87
L +DK+ S ++V+ +CA LD+++ + PA
Sbjct: 43 LGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPA 78
>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase
Complex From E.coli
pdb|4FZW|D Chain D, Crystal Structure Of The Paaf-paag Hydratase-isomerase
Complex From E.coli
Length = 274
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 49 EGGLSASELDKLPKISGKELVMGTECAVCLDEVESEQPAR--LVPGCNHGFHLQCADSWL 106
E G+ L++ +++ M + A CL +VE + R L+ G GF CA L
Sbjct: 22 EKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGF---CAGQDL 78
Query: 107 SKHSVCPV 114
+ +V P
Sbjct: 79 NDRNVDPT 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,900,917
Number of Sequences: 62578
Number of extensions: 145755
Number of successful extensions: 331
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 48
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)