Query 037529
Match_columns 133
No_of_seqs 139 out of 1710
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 22:50:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.9 8.6E-22 3E-26 118.6 6.5 78 43-121 8-89 (91)
2 1x4j_A Ring finger protein 38; 99.8 4E-21 1.4E-25 111.7 0.8 53 69-122 21-73 (75)
3 2ep4_A Ring finger protein 24; 99.8 8.5E-20 2.9E-24 105.8 5.6 58 67-125 11-68 (74)
4 2kiz_A E3 ubiquitin-protein li 99.8 1.1E-19 3.7E-24 103.9 5.4 57 67-124 10-66 (69)
5 1iym_A EL5; ring-H2 finger, ub 99.8 3.1E-20 1E-24 101.7 2.9 52 69-120 3-54 (55)
6 2ect_A Ring finger protein 126 99.8 9.8E-20 3.4E-24 106.5 4.8 59 68-127 12-70 (78)
7 2ecl_A Ring-box protein 2; RNF 99.8 2.1E-19 7.3E-24 105.9 4.4 55 69-123 13-78 (81)
8 1v87_A Deltex protein 2; ring- 99.7 3.7E-18 1.3E-22 106.5 5.2 58 70-128 24-101 (114)
9 2ecm_A Ring finger and CHY zin 99.7 2.2E-18 7.6E-23 94.2 2.7 50 70-120 4-54 (55)
10 3ng2_A RNF4, snurf, ring finge 99.7 3E-18 1E-22 98.3 3.4 55 69-124 8-66 (71)
11 2ea6_A Ring finger protein 4; 99.7 4.9E-18 1.7E-22 96.8 3.4 53 68-121 12-68 (69)
12 2d8t_A Dactylidin, ring finger 99.7 9.6E-18 3.3E-22 96.3 3.7 56 69-128 13-68 (71)
13 2xeu_A Ring finger protein 4; 99.7 5.7E-18 1.9E-22 95.2 2.5 54 70-124 2-59 (64)
14 3dpl_R Ring-box protein 1; ubi 99.7 1.6E-17 5.6E-22 102.3 4.1 52 69-121 35-101 (106)
15 2ecn_A Ring finger protein 141 99.7 1.8E-17 6E-22 94.9 3.3 51 69-124 13-63 (70)
16 2djb_A Polycomb group ring fin 99.7 6.9E-17 2.4E-21 93.0 5.4 57 67-126 11-67 (72)
17 2d8s_A Cellular modulator of i 99.7 3.4E-17 1.2E-21 96.0 3.9 56 69-126 13-75 (80)
18 2ct2_A Tripartite motif protei 99.7 8.5E-17 2.9E-21 95.8 5.2 56 67-123 11-70 (88)
19 1chc_A Equine herpes virus-1 r 99.7 4.2E-17 1.4E-21 92.8 2.8 50 70-122 4-53 (68)
20 4a0k_B E3 ubiquitin-protein li 99.6 3.2E-17 1.1E-21 102.4 0.2 52 69-121 46-112 (117)
21 2ecy_A TNF receptor-associated 99.6 8.3E-16 2.8E-20 86.9 5.2 50 69-122 13-63 (66)
22 2csy_A Zinc finger protein 183 99.6 6.4E-16 2.2E-20 90.8 4.6 48 69-120 13-60 (81)
23 2ysl_A Tripartite motif-contai 99.6 9.3E-16 3.2E-20 88.3 4.8 51 68-122 17-70 (73)
24 4ayc_A E3 ubiquitin-protein li 99.6 2.9E-16 1E-20 101.1 2.7 48 71-122 53-100 (138)
25 4ap4_A E3 ubiquitin ligase RNF 99.6 6.2E-16 2.1E-20 98.4 3.4 55 69-124 5-63 (133)
26 2yur_A Retinoblastoma-binding 99.6 1.2E-15 4.2E-20 88.1 4.2 52 67-121 11-64 (74)
27 2ct0_A Non-SMC element 1 homol 99.6 5E-15 1.7E-19 85.1 5.5 53 70-125 14-68 (74)
28 2egp_A Tripartite motif-contai 99.6 1.1E-15 3.8E-20 89.2 2.6 53 67-123 8-67 (79)
29 2ecw_A Tripartite motif-contai 99.6 4.9E-15 1.7E-19 87.4 5.1 52 68-123 16-73 (85)
30 1t1h_A Gspef-atpub14, armadill 99.6 4E-15 1.4E-19 86.7 4.6 50 69-122 6-56 (78)
31 3lrq_A E3 ubiquitin-protein li 99.5 1.8E-15 6.1E-20 92.4 2.8 51 69-123 20-72 (100)
32 1g25_A CDK-activating kinase a 99.5 4.5E-15 1.5E-19 83.6 4.2 55 70-125 2-59 (65)
33 2ecv_A Tripartite motif-contai 99.5 4.9E-15 1.7E-19 87.4 4.5 53 67-123 15-73 (85)
34 2y43_A E3 ubiquitin-protein li 99.5 4.8E-15 1.6E-19 90.2 3.4 50 70-122 21-70 (99)
35 2ysj_A Tripartite motif-contai 99.5 1.4E-14 4.6E-19 81.1 5.0 44 68-115 17-63 (63)
36 2ckl_A Polycomb group ring fin 99.5 4.1E-15 1.4E-19 91.9 2.5 51 69-122 13-63 (108)
37 4ap4_A E3 ubiquitin ligase RNF 99.5 5.8E-15 2E-19 93.9 2.9 55 69-124 70-128 (133)
38 2ecj_A Tripartite motif-contai 99.5 1.8E-14 6.2E-19 79.2 4.4 44 68-115 12-58 (58)
39 1e4u_A Transcriptional repress 99.5 4.9E-14 1.7E-18 82.1 6.3 56 68-124 8-65 (78)
40 3fl2_A E3 ubiquitin-protein li 99.5 1.4E-14 5E-19 91.5 3.3 48 70-121 51-99 (124)
41 2ckl_B Ubiquitin ligase protei 99.5 6E-14 2.1E-18 92.7 5.8 70 49-121 22-102 (165)
42 3hct_A TNF receptor-associated 99.5 2.3E-14 7.7E-19 89.9 3.5 52 67-122 14-66 (118)
43 3ztg_A E3 ubiquitin-protein li 99.5 5.2E-14 1.8E-18 84.4 4.0 50 68-120 10-61 (92)
44 1jm7_A BRCA1, breast cancer ty 99.4 5.1E-14 1.7E-18 87.2 3.8 51 70-124 20-73 (112)
45 2vje_A E3 ubiquitin-protein li 99.4 4.4E-14 1.5E-18 79.4 2.7 48 70-121 7-57 (64)
46 1rmd_A RAG1; V(D)J recombinati 99.4 3.3E-14 1.1E-18 88.8 2.4 51 70-124 22-73 (116)
47 1z6u_A NP95-like ring finger p 99.4 9.8E-14 3.3E-18 90.4 3.4 49 70-122 77-126 (150)
48 2vje_B MDM4 protein; proto-onc 99.4 1E-13 3.6E-18 77.6 2.8 51 69-121 5-56 (63)
49 3l11_A E3 ubiquitin-protein li 99.4 3E-14 1E-18 88.9 0.6 49 69-121 13-62 (115)
50 2kr4_A Ubiquitin conjugation f 99.4 6.1E-13 2.1E-17 78.7 4.4 50 69-122 12-61 (85)
51 2y1n_A E3 ubiquitin-protein li 99.4 4.6E-13 1.6E-17 98.5 4.3 49 71-123 332-381 (389)
52 1bor_A Transcription factor PM 99.3 1.7E-13 5.9E-18 74.9 1.5 47 69-122 4-50 (56)
53 2kre_A Ubiquitin conjugation f 99.3 7.8E-13 2.7E-17 80.5 4.2 50 69-122 27-76 (100)
54 3knv_A TNF receptor-associated 99.3 3.8E-13 1.3E-17 86.7 2.4 49 68-120 28-77 (141)
55 1wgm_A Ubiquitin conjugation f 99.3 1.5E-12 5.3E-17 78.9 4.8 50 69-122 20-70 (98)
56 4ic3_A E3 ubiquitin-protein li 99.3 3.7E-13 1.3E-17 77.6 1.1 45 70-122 23-68 (74)
57 1jm7_B BARD1, BRCA1-associated 99.3 4.5E-13 1.6E-17 83.8 0.7 46 70-121 21-67 (117)
58 3k1l_B Fancl; UBC, ring, RWD, 99.3 1E-12 3.5E-17 94.8 1.4 55 69-124 306-376 (381)
59 3hcs_A TNF receptor-associated 99.2 2.7E-12 9.1E-17 85.1 2.9 52 67-122 14-66 (170)
60 2ecg_A Baculoviral IAP repeat- 99.2 5.8E-12 2E-16 72.7 2.2 45 70-122 24-69 (75)
61 2ea5_A Cell growth regulator w 99.2 1.4E-11 4.9E-16 69.8 3.7 47 69-123 13-60 (68)
62 2yu4_A E3 SUMO-protein ligase 99.2 9.5E-12 3.2E-16 74.9 2.6 50 69-121 5-63 (94)
63 1wim_A KIAA0161 protein; ring 99.2 1.1E-11 3.9E-16 74.5 2.7 51 70-121 4-66 (94)
64 1vyx_A ORF K3, K3RING; zinc-bi 99.2 2.6E-11 8.8E-16 67.0 3.8 48 69-120 4-58 (60)
65 2yho_A E3 ubiquitin-protein li 99.2 7.9E-12 2.7E-16 72.9 1.7 47 70-124 17-64 (79)
66 2c2l_A CHIP, carboxy terminus 99.1 3.3E-11 1.1E-15 85.2 3.6 51 69-123 206-257 (281)
67 2f42_A STIP1 homology and U-bo 99.1 1.1E-10 3.7E-15 77.8 3.9 53 67-123 102-155 (179)
68 2bay_A PRE-mRNA splicing facto 98.9 6.9E-10 2.4E-14 61.4 2.4 51 72-126 4-55 (61)
69 3t6p_A Baculoviral IAP repeat- 98.9 2.2E-10 7.7E-15 83.5 0.1 45 70-122 294-339 (345)
70 3htk_C E3 SUMO-protein ligase 98.8 1.3E-09 4.4E-14 76.2 3.0 52 70-124 180-235 (267)
71 3vk6_A E3 ubiquitin-protein li 98.6 2.1E-08 7.3E-13 59.9 3.0 46 73-121 3-49 (101)
72 3nw0_A Non-structural maintena 98.5 1.6E-07 5.6E-12 65.2 4.5 51 71-124 180-232 (238)
73 2ko5_A Ring finger protein Z; 97.4 0.00011 3.8E-09 43.2 2.9 49 69-123 26-75 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 97.0 0.0004 1.4E-08 41.5 2.9 34 71-105 3-36 (101)
75 2lri_C Autoimmune regulator; Z 96.3 0.0031 1.1E-07 34.9 2.8 46 70-119 11-60 (66)
76 1wil_A KIAA1045 protein; ring 95.6 0.02 6.8E-07 32.9 4.2 35 69-105 13-47 (89)
77 2l5u_A Chromodomain-helicase-D 94.3 0.024 8.2E-07 30.6 2.1 47 68-118 8-58 (61)
78 2k16_A Transcription initiatio 93.6 0.017 5.8E-07 32.5 0.6 52 69-121 16-71 (75)
79 1f62_A Transcription factor WS 93.3 0.035 1.2E-06 28.7 1.4 44 73-117 2-49 (51)
80 1we9_A PHD finger family prote 92.8 0.016 5.4E-07 31.6 -0.4 49 69-118 4-58 (64)
81 3lqh_A Histone-lysine N-methyl 92.5 0.02 6.7E-07 38.0 -0.3 50 71-121 2-66 (183)
82 1wep_A PHF8; structural genomi 92.4 0.2 6.7E-06 28.4 3.9 55 70-126 11-71 (79)
83 2yql_A PHD finger protein 21A; 92.4 0.011 3.7E-07 31.5 -1.4 45 69-117 7-55 (56)
84 2ysm_A Myeloid/lymphoid or mix 92.4 0.024 8.2E-07 34.4 -0.0 38 69-107 5-42 (111)
85 1xwh_A Autoimmune regulator; P 92.3 0.022 7.5E-07 31.3 -0.2 49 69-121 6-58 (66)
86 1mm2_A MI2-beta; PHD, zinc fin 92.2 0.026 9.1E-07 30.5 0.1 47 69-119 7-57 (61)
87 3m62_A Ubiquitin conjugation f 90.9 0.26 8.7E-06 40.5 4.4 51 69-123 889-940 (968)
88 2ku3_A Bromodomain-containing 90.6 0.075 2.6E-06 29.6 0.8 50 69-118 14-66 (71)
89 3o36_A Transcription intermedi 90.5 0.059 2E-06 35.6 0.4 47 70-120 3-53 (184)
90 2lbm_A Transcriptional regulat 90.3 0.36 1.2E-05 30.6 3.9 48 66-117 58-116 (142)
91 2l43_A N-teminal domain from h 90.1 0.062 2.1E-06 31.3 0.2 55 69-123 23-80 (88)
92 2co8_A NEDD9 interacting prote 89.9 0.52 1.8E-05 26.5 4.1 46 69-125 13-58 (82)
93 2yw8_A RUN and FYVE domain-con 89.8 0.15 5.3E-06 29.1 1.7 52 69-120 17-74 (82)
94 3u5n_A E3 ubiquitin-protein li 89.6 0.03 1E-06 37.7 -1.7 47 69-119 5-55 (207)
95 2puy_A PHD finger protein 21A; 89.4 0.021 7.1E-07 30.7 -2.1 47 70-120 4-54 (60)
96 1fp0_A KAP-1 corepressor; PHD 89.2 0.19 6.4E-06 29.2 1.8 47 68-118 22-72 (88)
97 3v43_A Histone acetyltransfera 89.0 0.62 2.1E-05 28.1 4.2 32 71-103 5-42 (112)
98 2lv9_A Histone-lysine N-methyl 89.0 0.098 3.3E-06 31.0 0.5 45 71-117 28-75 (98)
99 2vpb_A Hpygo1, pygopus homolog 87.9 0.43 1.5E-05 26.0 2.6 33 71-103 8-41 (65)
100 3v43_A Histone acetyltransfera 87.6 0.082 2.8E-06 32.1 -0.5 46 72-117 62-111 (112)
101 2e6r_A Jumonji/ARID domain-con 87.2 0.051 1.7E-06 31.9 -1.6 49 69-118 14-66 (92)
102 1z2q_A LM5-1; membrane protein 87.0 0.55 1.9E-05 26.8 2.9 52 69-120 19-78 (84)
103 3ql9_A Transcriptional regulat 86.4 0.83 2.8E-05 28.4 3.6 50 65-118 51-111 (129)
104 2knc_A Integrin alpha-IIB; tra 85.7 2.6 8.8E-05 22.0 6.1 16 4-19 14-29 (54)
105 1z60_A TFIIH basal transcripti 85.7 0.41 1.4E-05 25.6 1.7 43 72-115 16-58 (59)
106 3o70_A PHD finger protein 13; 85.6 0.093 3.2E-06 29.0 -0.9 49 67-117 15-66 (68)
107 2ro1_A Transcription intermedi 85.6 0.13 4.4E-06 34.2 -0.4 45 71-119 2-50 (189)
108 2xb1_A Pygopus homolog 2, B-ce 84.8 0.08 2.7E-06 31.8 -1.6 50 72-121 4-64 (105)
109 3t7l_A Zinc finger FYVE domain 84.5 0.69 2.4E-05 26.8 2.4 52 70-121 19-76 (90)
110 2l8s_A Integrin alpha-1; trans 84.3 3 0.0001 21.7 5.4 20 3-22 10-29 (54)
111 1wev_A Riken cDNA 1110020M19; 83.6 0.14 4.8E-06 29.7 -0.8 52 71-122 16-76 (88)
112 1g47_A Pinch protein; LIM doma 83.4 0.73 2.5E-05 25.3 2.2 43 71-123 11-53 (77)
113 2ri7_A Nucleosome-remodeling f 83.2 0.25 8.4E-06 32.1 0.1 47 70-118 7-59 (174)
114 1weo_A Cellulose synthase, cat 83.0 4.8 0.00016 23.3 5.5 51 70-120 15-69 (93)
115 1vfy_A Phosphatidylinositol-3- 83.0 0.71 2.4E-05 25.6 2.0 34 71-104 11-44 (73)
116 2gmg_A Hypothetical protein PF 82.3 0.19 6.6E-06 30.1 -0.6 21 93-118 73-93 (105)
117 1joc_A EEA1, early endosomal a 82.2 0.75 2.6E-05 28.4 2.1 33 70-105 68-103 (125)
118 1wyh_A SLIM 2, skeletal muscle 82.0 0.69 2.3E-05 25.1 1.7 42 72-123 6-47 (72)
119 2cu8_A Cysteine-rich protein 2 81.7 0.51 1.8E-05 26.0 1.1 43 71-124 9-51 (76)
120 3mjh_B Early endosome antigen 80.9 0.44 1.5E-05 22.5 0.5 16 70-85 4-19 (34)
121 2yt5_A Metal-response element- 80.8 0.43 1.5E-05 25.8 0.5 51 69-119 4-62 (66)
122 1x4u_A Zinc finger, FYVE domai 80.6 1 3.5E-05 25.6 2.1 32 70-104 13-47 (84)
123 1y02_A CARP2, FYVE-ring finger 80.4 0.15 5.3E-06 31.4 -1.5 48 71-118 19-66 (120)
124 1x4l_A Skeletal muscle LIM-pro 80.4 1.1 3.9E-05 24.2 2.3 44 71-124 5-50 (72)
125 1wfk_A Zinc finger, FYVE domai 80.3 0.96 3.3E-05 26.1 2.0 54 70-123 8-68 (88)
126 3shb_A E3 ubiquitin-protein li 80.1 0.12 4.1E-06 29.3 -1.9 44 73-117 28-76 (77)
127 1x61_A Thyroid receptor intera 80.0 1.4 4.7E-05 23.8 2.5 41 72-122 6-46 (72)
128 2kgg_A Histone demethylase jar 80.0 0.32 1.1E-05 25.1 -0.2 44 73-116 4-52 (52)
129 1x4k_A Skeletal muscle LIM-pro 79.6 0.71 2.4E-05 25.0 1.2 42 72-123 6-47 (72)
130 3zyq_A Hepatocyte growth facto 79.4 1.2 4.1E-05 30.3 2.5 51 70-120 163-221 (226)
131 2dj7_A Actin-binding LIM prote 79.3 1.4 4.8E-05 24.6 2.4 41 70-121 14-54 (80)
132 1dvp_A HRS, hepatocyte growth 79.2 1.2 4.1E-05 30.1 2.4 32 70-104 160-194 (220)
133 2d8y_A Eplin protein; LIM doma 77.4 4 0.00014 23.1 4.1 42 71-123 15-56 (91)
134 1wew_A DNA-binding family prot 76.9 0.75 2.6E-05 25.9 0.8 46 71-118 16-72 (78)
135 2e6s_A E3 ubiquitin-protein li 76.9 0.26 8.8E-06 27.9 -1.2 45 72-117 27-76 (77)
136 4gne_A Histone-lysine N-methyl 76.3 0.86 2.9E-05 27.4 0.9 46 69-119 13-63 (107)
137 1x63_A Skeletal muscle LIM-pro 76.1 1.3 4.4E-05 24.6 1.6 42 72-123 16-57 (82)
138 3asl_A E3 ubiquitin-protein li 75.0 0.27 9.2E-06 27.2 -1.4 44 73-117 20-68 (70)
139 1iml_A CRIP, cysteine rich int 73.9 0.87 3E-05 25.0 0.5 12 72-83 28-39 (76)
140 1x68_A FHL5 protein; four-and- 73.8 1.5 5E-05 24.1 1.5 41 72-122 6-48 (76)
141 2jvx_A NF-kappa-B essential mo 73.5 0.78 2.7E-05 20.6 0.2 13 109-121 3-15 (28)
142 1a7i_A QCRP2 (LIM1); LIM domai 73.1 0.65 2.2E-05 25.9 -0.2 42 71-123 7-48 (81)
143 1weu_A Inhibitor of growth fam 72.8 1.5 5.1E-05 25.5 1.3 45 70-119 35-86 (91)
144 2cor_A Pinch protein; LIM doma 72.8 3.6 0.00012 22.7 3.0 41 71-123 15-55 (79)
145 2o35_A Hypothetical protein DU 72.7 1.7 5.8E-05 25.7 1.6 11 97-107 43-53 (105)
146 3fyb_A Protein of unknown func 72.6 1.7 5.9E-05 25.6 1.6 11 97-107 42-52 (104)
147 2d8v_A Zinc finger FYVE domain 72.6 1.9 6.4E-05 23.5 1.6 31 70-105 7-38 (67)
148 1nyp_A Pinch protein; LIM doma 72.2 1.4 4.9E-05 23.3 1.1 41 72-124 6-46 (66)
149 1zfo_A LAsp-1; LIM domain, zin 71.5 1.6 5.4E-05 19.8 1.0 27 72-101 4-30 (31)
150 1wen_A Inhibitor of growth fam 71.4 1.4 4.8E-05 24.3 1.0 45 70-119 15-66 (71)
151 1wem_A Death associated transc 70.9 2.3 7.7E-05 23.6 1.8 46 71-118 16-70 (76)
152 2kwj_A Zinc finger protein DPF 70.5 0.19 6.5E-06 30.5 -3.0 47 72-119 59-109 (114)
153 2l3k_A Rhombotin-2, linker, LI 70.5 1.9 6.6E-05 26.1 1.6 11 73-83 10-20 (123)
154 2d8z_A Four and A half LIM dom 69.9 2.3 8E-05 22.7 1.7 41 72-124 6-46 (70)
155 3ask_A E3 ubiquitin-protein li 69.9 0.68 2.3E-05 31.6 -0.6 45 72-117 175-224 (226)
156 2dlo_A Thyroid receptor-intera 69.8 3.1 0.00011 23.0 2.2 42 71-124 15-56 (81)
157 3mpx_A FYVE, rhogef and PH dom 69.4 0.97 3.3E-05 33.4 0.0 50 70-119 374-430 (434)
158 3f6q_B LIM and senescent cell 69.4 1.8 6E-05 23.2 1.1 44 70-123 10-53 (72)
159 3a1b_A DNA (cytosine-5)-methyl 69.3 4 0.00014 26.3 2.9 48 66-117 74-133 (159)
160 2ehe_A Four and A half LIM dom 69.0 2.9 9.8E-05 23.2 2.0 43 72-124 16-58 (82)
161 1wee_A PHD finger family prote 68.4 0.61 2.1E-05 25.8 -1.0 46 71-118 16-66 (72)
162 2cs3_A Protein C14ORF4, MY039 68.4 14 0.00048 21.0 5.1 39 70-108 14-52 (93)
163 3i2d_A E3 SUMO-protein ligase 67.3 3.2 0.00011 30.5 2.3 48 72-122 250-301 (371)
164 1x6a_A LIMK-2, LIM domain kina 67.2 3.5 0.00012 22.7 2.1 38 72-121 16-53 (81)
165 2zet_C Melanophilin; complex, 66.5 2.5 8.4E-05 27.1 1.5 47 70-118 67-117 (153)
166 1zbd_B Rabphilin-3A; G protein 66.3 1.8 6.3E-05 27.0 0.8 49 69-118 53-107 (134)
167 2vnf_A ING 4, P29ING4, inhibit 65.8 0.81 2.8E-05 24.4 -0.8 42 71-117 10-58 (60)
168 4fo9_A E3 SUMO-protein ligase 65.7 3.5 0.00012 30.1 2.3 48 72-122 216-267 (360)
169 1x62_A C-terminal LIM domain p 64.6 4.4 0.00015 22.3 2.2 40 71-122 15-54 (79)
170 2dar_A PDZ and LIM domain prot 64.4 3.5 0.00012 23.4 1.8 42 71-124 25-66 (90)
171 2d8x_A Protein pinch; LIM doma 64.2 3.8 0.00013 21.9 1.8 40 72-123 6-45 (70)
172 3c6w_A P28ING5, inhibitor of g 64.1 0.96 3.3E-05 24.0 -0.7 42 71-117 9-57 (59)
173 2egq_A FHL1 protein; LIM domai 63.6 3.1 0.00011 22.6 1.4 43 72-124 16-61 (77)
174 2cur_A Skeletal muscle LIM-pro 63.0 3.8 0.00013 21.8 1.6 40 72-123 6-45 (69)
175 2pv0_B DNA (cytosine-5)-methyl 62.5 7.8 0.00027 28.6 3.6 48 67-118 89-148 (386)
176 3kqi_A GRC5, PHD finger protei 62.5 3.6 0.00012 22.7 1.5 52 72-124 10-67 (75)
177 2l4z_A DNA endonuclease RBBP8, 61.3 9.3 0.00032 23.1 3.4 39 71-120 61-99 (123)
178 2iyb_E Testin, TESS, TES; LIM 61.2 3 0.0001 22.1 1.0 43 72-124 3-47 (65)
179 2g6q_A Inhibitor of growth pro 59.9 1.3 4.4E-05 23.8 -0.7 42 71-117 11-59 (62)
180 2cup_A Skeletal muscle LIM-pro 59.9 5.2 0.00018 23.0 2.0 45 72-121 34-78 (101)
181 1x64_A Alpha-actinin-2 associa 59.9 8 0.00028 21.7 2.8 42 70-123 24-65 (89)
182 1m3v_A FLIN4, fusion of the LI 58.6 7.4 0.00025 23.4 2.6 50 72-123 33-83 (122)
183 2k1a_A Integrin alpha-IIB; sin 58.4 15 0.00052 18.0 3.7 7 5-11 13-19 (42)
184 1v6g_A Actin binding LIM prote 58.1 5.1 0.00017 22.1 1.6 39 72-122 16-54 (81)
185 2cuq_A Four and A half LIM dom 58.0 5.3 0.00018 21.8 1.7 39 72-122 16-54 (80)
186 2xjy_A Rhombotin-2; oncoprotei 57.7 7.7 0.00026 23.4 2.6 47 72-120 30-77 (131)
187 2rsd_A E3 SUMO-protein ligase 57.0 0.59 2E-05 25.5 -2.4 45 72-117 11-64 (68)
188 1wig_A KIAA1808 protein; LIM d 57.0 4.2 0.00014 22.1 1.2 37 72-120 6-42 (73)
189 3o7a_A PHD finger protein 13 v 56.2 1 3.6E-05 23.1 -1.4 41 76-117 8-51 (52)
190 1x3h_A Leupaxin; paxillin fami 54.0 7.6 0.00026 21.2 2.0 40 72-123 16-55 (80)
191 1b8t_A Protein (CRP1); LIM dom 53.9 6.2 0.00021 25.7 1.8 42 71-123 115-156 (192)
192 2jmo_A Parkin; IBR, E3 ligase, 52.4 0.69 2.3E-05 26.2 -2.7 14 92-105 55-68 (80)
193 3kv5_D JMJC domain-containing 51.6 3.3 0.00011 31.5 0.2 48 71-120 37-90 (488)
194 2lk9_A Bone marrow stromal ant 51.5 18 0.00061 16.8 3.9 18 4-21 8-25 (35)
195 2lcq_A Putative toxin VAPC6; P 48.5 2.6 9E-05 26.9 -0.7 21 93-119 138-158 (165)
196 2jne_A Hypothetical protein YF 48.3 4.8 0.00016 23.7 0.4 42 71-121 32-73 (101)
197 3vhs_A ATPase wrnip1; zinc fin 45.8 3.8 0.00013 17.8 -0.2 10 111-120 8-17 (29)
198 4ayb_P DNA-directed RNA polyme 45.6 21 0.00073 17.9 2.5 15 109-123 23-37 (48)
199 1j2o_A FLIN2, fusion of rhombo 45.2 13 0.00044 22.0 2.1 37 71-109 30-67 (114)
200 2akl_A PHNA-like protein PA012 44.3 12 0.00041 23.2 1.8 31 67-97 23-54 (138)
201 1l8d_A DNA double-strand break 44.1 5.2 0.00018 23.7 0.2 13 109-121 47-59 (112)
202 3c5k_A HD6, histone deacetylas 43.0 21 0.00073 21.2 2.8 24 71-98 24-47 (109)
203 2kpi_A Uncharacterized protein 40.9 9.1 0.00031 19.9 0.8 13 71-83 10-22 (56)
204 2jrp_A Putative cytoplasmic pr 40.5 10 0.00036 21.4 1.1 12 72-83 3-14 (81)
205 2fiy_A Protein FDHE homolog; F 40.2 4.5 0.00015 28.9 -0.6 47 70-118 181-231 (309)
206 2xqn_T Testin, TESS; metal-bin 39.0 12 0.0004 22.4 1.2 26 93-120 49-74 (126)
207 1rut_X Flinc4, fusion protein 38.9 15 0.00052 23.7 1.9 27 94-120 54-80 (188)
208 1loi_A Cyclic 3',5'-AMP specif 38.5 0.97 3.3E-05 19.1 -2.6 11 96-106 6-16 (26)
209 4esj_A Type-2 restriction enzy 38.4 7.6 0.00026 26.7 0.3 15 103-117 28-42 (257)
210 2jtn_A LIM domain-binding prot 37.8 11 0.00036 24.4 0.9 45 71-121 87-131 (182)
211 2das_A Zinc finger MYM-type pr 36.3 36 0.0012 18.0 2.6 36 70-105 19-55 (62)
212 2pk7_A Uncharacterized protein 36.3 5.8 0.0002 21.7 -0.5 17 105-121 4-20 (69)
213 2ffw_A Midline-1; B-BOX, ring 36.3 55 0.0019 17.9 3.8 34 70-104 29-62 (78)
214 2jny_A Uncharacterized BCR; st 35.4 5.5 0.00019 21.7 -0.6 18 104-121 5-22 (67)
215 2csz_A Synaptotagmin-like prot 34.7 20 0.00068 20.0 1.6 33 69-101 23-56 (76)
216 3pwf_A Rubrerythrin; non heme 34.4 15 0.00053 23.6 1.3 20 92-118 143-162 (170)
217 2lq6_A Bromodomain-containing 32.1 26 0.00087 19.9 1.8 33 72-105 18-51 (87)
218 2l6w_A Beta-type platelet-deri 36.9 10 0.00036 18.2 0.0 21 10-30 14-34 (39)
219 1r79_A Diacylglycerol kinase, 30.6 76 0.0026 17.9 4.1 42 69-114 36-80 (84)
220 2ct7_A Ring finger protein 31; 30.3 2 6.8E-05 24.5 -3.2 27 90-116 46-74 (86)
221 3mkr_B Coatomer subunit alpha; 29.7 52 0.0018 23.6 3.4 42 70-117 261-302 (320)
222 1lv3_A Hypothetical protein YA 29.3 13 0.00044 20.3 0.2 11 110-120 10-20 (68)
223 2hf1_A Tetraacyldisaccharide-1 28.4 16 0.00056 19.8 0.5 13 110-122 9-21 (68)
224 1lko_A Rubrerythrin all-iron(I 28.2 11 0.00037 24.8 -0.3 21 92-118 160-180 (191)
225 1wvk_A AT2G23090/F21P24.15; st 26.4 17 0.00059 20.8 0.4 11 71-81 45-55 (86)
226 2js4_A UPF0434 protein BB2007; 26.2 18 0.00061 19.8 0.4 15 108-122 7-21 (70)
227 3kv4_A PHD finger protein 8; e 25.6 14 0.00048 27.8 -0.1 50 72-122 5-60 (447)
228 3mv2_A Coatomer subunit alpha; 24.6 51 0.0018 23.7 2.6 41 71-117 271-311 (325)
229 2jz8_A Uncharacterized protein 24.5 36 0.0012 19.5 1.5 13 111-123 50-62 (87)
230 1yuz_A Nigerythrin; rubrythrin 24.2 23 0.00077 23.5 0.7 20 92-118 176-195 (202)
231 3i1m_R 30S ribosomal protein S 23.2 23 0.00078 19.7 0.5 18 107-124 6-23 (75)
232 1q90_G Cytochrome B6F complex 23.1 71 0.0024 15.0 3.6 23 8-30 8-30 (37)
233 2jr6_A UPF0434 protein NMA0874 22.1 9.8 0.00033 20.7 -1.2 13 109-121 8-20 (68)
234 2a20_A Regulating synaptic mem 21.9 51 0.0018 17.4 1.7 16 68-83 6-22 (62)
235 3ihp_A Ubiquitin carboxyl-term 20.9 49 0.0017 27.0 2.1 28 89-119 173-200 (854)
236 2i5o_A DNA polymerase ETA; zin 20.8 23 0.00078 17.0 0.2 12 110-121 10-21 (39)
237 2apo_B Ribosome biogenesis pro 20.6 75 0.0026 16.7 2.2 15 109-123 18-32 (60)
238 3ph0_C ASCG; type III secretio 20.3 70 0.0024 16.8 1.9 18 93-110 17-36 (61)
239 1wd2_A Ariadne-1 protein homol 20.2 10 0.00034 20.0 -1.4 35 72-106 7-45 (60)
240 2js3_A Uncharacterized protein 20.2 30 0.001 19.4 0.6 9 72-80 54-62 (96)
241 4gut_A Lysine-specific histone 20.1 95 0.0032 25.0 3.6 39 69-108 11-56 (776)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.85 E-value=8.6e-22 Score=118.65 Aligned_cols=78 Identities=32% Similarity=0.618 Sum_probs=66.5
Q ss_pred CcccccCCCCCHHHHhhCCCcccCC----CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccc
Q 037529 43 PVKAAAEGGLSASELDKLPKISGKE----LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAK 118 (133)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 118 (133)
........+++++.++.+|...... ..++.+|+||+++|..++.++.+| |||.||..||..|+..+.+||+||+.
T Consensus 8 ~~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 8 HSHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp SCCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred CCCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 3455567899999999999765433 245678999999999999899999 99999999999999999999999998
Q ss_pred ccc
Q 037529 119 LDS 121 (133)
Q Consensus 119 v~~ 121 (133)
+..
T Consensus 87 ~~~ 89 (91)
T 2l0b_A 87 FPP 89 (91)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4e-21 Score=111.71 Aligned_cols=53 Identities=43% Similarity=0.971 Sum_probs=48.5
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH 122 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 122 (133)
.++.+|+||+++|..++.++.+| |||.||.+||..|+..+.+||+||+.+.+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 45678999999999999889999 999999999999999999999999988654
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.5e-20 Score=105.76 Aligned_cols=58 Identities=33% Similarity=0.752 Sum_probs=50.6
Q ss_pred CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccccc
Q 037529 67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFN 125 (133)
Q Consensus 67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~~ 125 (133)
+...+.+|+||++++..++.+..++ |||.||.+||.+|++.+.+||+||+.+......
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccccc
Confidence 3345688999999999999888999 999999999999999999999999998764443
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=103.93 Aligned_cols=57 Identities=33% Similarity=0.832 Sum_probs=50.1
Q ss_pred CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529 67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~ 124 (133)
+...+.+|+||++.|..++.++.++ |||.||.+||..|+..+.+||+||+.+.....
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 3345678999999999888888999 99999999999999999999999998876543
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.79 E-value=3.1e-20 Score=101.70 Aligned_cols=52 Identities=52% Similarity=1.145 Sum_probs=46.8
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 120 (133)
.++.+|+||++++.+++....++.|||.||.+|+.+|++++.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3567899999999998888888669999999999999999999999998764
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=9.8e-20 Score=106.51 Aligned_cols=59 Identities=37% Similarity=0.804 Sum_probs=51.7
Q ss_pred CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccccccC
Q 037529 68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNAL 127 (133)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~~~~ 127 (133)
..++.+|+||++.|..++.+..++ |||.||.+||..|+..+.+||+||+.+........
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 345689999999999988888898 99999999999999999999999999977655443
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-19 Score=105.89 Aligned_cols=55 Identities=29% Similarity=0.645 Sum_probs=44.1
Q ss_pred CCccccccccccccc-----------CCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529 69 VMGTECAVCLDEVES-----------EQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
.++++|+||+++|.+ ++.++.++.|||.||.+||++|+.++.+||+||+++....
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 346778888888854 3445555559999999999999999999999999886554
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.73 E-value=3.7e-18 Score=106.53 Aligned_cols=58 Identities=22% Similarity=0.538 Sum_probs=45.8
Q ss_pred CcccccccccccccCC---------------CccccCCCCccccHHHHHHHH-----hCCCccccccccccccccccCC
Q 037529 70 MGTECAVCLDEVESEQ---------------PARLVPGCNHGFHLQCADSWL-----SKHSVCPVCRAKLDSHFFNALE 128 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~v~~~~~~~~~ 128 (133)
.+.+|+||+++|.++. .+..++ |||.||.+||..|+ ..+.+||+||+.+.....+.+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~ 101 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW 101 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTT
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCC
Confidence 3568999999997653 233677 99999999999999 4567999999988776555444
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.72 E-value=2.2e-18 Score=94.16 Aligned_cols=50 Identities=26% Similarity=0.757 Sum_probs=43.4
Q ss_pred CcccccccccccccCC-CccccCCCCccccHHHHHHHHhCCCcccccccccc
Q 037529 70 MGTECAVCLDEVESEQ-PARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 120 (133)
++.+|+||++++.+++ ....++ |||.||.+|+.+|+..+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4578999999996544 566787 9999999999999999999999998764
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.71 E-value=3e-18 Score=98.31 Aligned_cols=55 Identities=25% Similarity=0.586 Sum_probs=46.6
Q ss_pred CCcccccccccccccC----CCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529 69 VMGTECAVCLDEVESE----QPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~ 124 (133)
.++.+|+||++.+.+. +....++ |||.||.+|+.+|+..+.+||+||+.+.....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 4568899999998763 4456777 99999999999999999999999999876544
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.9e-18 Score=96.80 Aligned_cols=53 Identities=26% Similarity=0.578 Sum_probs=44.9
Q ss_pred CCCcccccccccccccC----CCccccCCCCccccHHHHHHHHhCCCccccccccccc
Q 037529 68 LVMGTECAVCLDEVESE----QPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS 121 (133)
Q Consensus 68 ~~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 121 (133)
..++.+|+||++.+.+. ..+..++ |||.||.+||..|+..+.+||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34568899999999864 3346777 99999999999999999999999998764
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=9.6e-18 Score=96.34 Aligned_cols=56 Identities=25% Similarity=0.575 Sum_probs=47.3
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccccccCC
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNALE 128 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~~~~~ 128 (133)
.++.+|+||++.+.+ ...++ |||.||.+||..|+..+..||+||+.+.......+.
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p~ 68 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSGP 68 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCSC
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCCC
Confidence 456789999999876 45678 999999999999999999999999999876555443
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.69 E-value=5.7e-18 Score=95.17 Aligned_cols=54 Identities=26% Similarity=0.605 Sum_probs=45.7
Q ss_pred CcccccccccccccC----CCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529 70 MGTECAVCLDEVESE----QPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~ 124 (133)
++.+|+||++.+.++ +....++ |||.||.+|+.+|+.++.+||+||+.+.....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 357899999999763 4456777 99999999999999999999999999876543
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.69 E-value=1.6e-17 Score=102.27 Aligned_cols=52 Identities=27% Similarity=0.710 Sum_probs=43.8
Q ss_pred CCcccccccccccccCC---------------CccccCCCCccccHHHHHHHHhCCCccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQ---------------PARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS 121 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 121 (133)
.+++.|+||++.|.+.- .++.++ |||.||..||.+||..+.+||+||+.+..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 35688999999998641 355677 99999999999999999999999998643
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-17 Score=94.90 Aligned_cols=51 Identities=31% Similarity=0.870 Sum_probs=44.5
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~ 124 (133)
.++..|+||++.+.+ ..++ |||.||.+|+..|+..+.+||+||+.+.....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 456889999999876 6788 99999999999999999999999999876543
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=6.9e-17 Score=92.95 Aligned_cols=57 Identities=19% Similarity=0.376 Sum_probs=46.2
Q ss_pred CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccccc
Q 037529 67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNA 126 (133)
Q Consensus 67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~~~ 126 (133)
+..+...|+||++.+.+ .+..++ |||.||.+||..|+..+..||+||+.+.......
T Consensus 11 ~~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 11 ELTPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CCCGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred hcCCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 34556889999999876 233347 9999999999999999999999999987655443
No 17
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-17 Score=95.96 Aligned_cols=56 Identities=23% Similarity=0.597 Sum_probs=45.9
Q ss_pred CCcccccccccccccCCCccccCCCC-----ccccHHHHHHHHhCC--Ccccccccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCN-----HGFHLQCADSWLSKH--SVCPVCRAKLDSHFFNA 126 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~-----H~fh~~Ci~~wl~~~--~~CP~Cr~~v~~~~~~~ 126 (133)
.++..|.||++++.+++.+ ++| |+ |.||.+||++|+..+ .+||+||+.+.......
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~ 75 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLS 75 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccC
Confidence 4567899999999877766 688 96 999999999999865 59999999886554333
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=8.5e-17 Score=95.81 Aligned_cols=56 Identities=27% Similarity=0.571 Sum_probs=46.9
Q ss_pred CCCCcccccccccccccCCC-ccccCCCCccccHHHHHHHHhCC---Cccccccccccccc
Q 037529 67 ELVMGTECAVCLDEVESEQP-ARLVPGCNHGFHLQCADSWLSKH---SVCPVCRAKLDSHF 123 (133)
Q Consensus 67 ~~~~~~~C~ICl~~~~~~~~-~~~lp~C~H~fh~~Ci~~wl~~~---~~CP~Cr~~v~~~~ 123 (133)
...+..+|+||++.|.+++. ...++ |||.||.+|+..|+..+ ..||+||+.+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 44556889999999998764 66777 99999999999999875 79999999876543
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.65 E-value=4.2e-17 Score=92.78 Aligned_cols=50 Identities=26% Similarity=0.872 Sum_probs=43.1
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH 122 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 122 (133)
.+.+|+||++.+.+ ....++ |||.||.+|+..|+..+.+||+||+.+...
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 45789999999864 346778 999999999999999999999999998754
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.62 E-value=3.2e-17 Score=102.36 Aligned_cols=52 Identities=27% Similarity=0.737 Sum_probs=1.6
Q ss_pred CCcccccccccccccC-------------C--CccccCCCCccccHHHHHHHHhCCCccccccccccc
Q 037529 69 VMGTECAVCLDEVESE-------------Q--PARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS 121 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~-------------~--~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 121 (133)
..++.|+||+++|.+. + .+..++ |+|.||.+||.+|+..+.+||+||+++..
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CCC-----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 3568999999999752 2 233356 99999999999999999999999998654
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.3e-16 Score=86.92 Aligned_cols=50 Identities=22% Similarity=0.452 Sum_probs=41.8
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHh-CCCcccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS-KHSVCPVCRAKLDSH 122 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~v~~~ 122 (133)
.+...|+||++.+.++. .++ |||.||.+|+..|+. .+..||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 45688999999988643 367 999999999999995 567899999988764
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=6.4e-16 Score=90.79 Aligned_cols=48 Identities=19% Similarity=0.475 Sum_probs=42.1
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 120 (133)
.....|+||++.+.+ ..+++ |||.||..|+..|+.....||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 446789999999976 34677 9999999999999999999999999885
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=9.3e-16 Score=88.26 Aligned_cols=51 Identities=25% Similarity=0.652 Sum_probs=42.3
Q ss_pred CCCcccccccccccccCCCccccCCCCccccHHHHHHHHh---CCCcccccccccccc
Q 037529 68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS---KHSVCPVCRAKLDSH 122 (133)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~---~~~~CP~Cr~~v~~~ 122 (133)
..++..|+||++.+.+ ...++ |||.||.+|+..|+. .+..||+||+.+...
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 3456889999999885 44567 999999999999997 355899999988654
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.60 E-value=2.9e-16 Score=101.09 Aligned_cols=48 Identities=27% Similarity=0.794 Sum_probs=42.4
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH 122 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 122 (133)
+..|+||++.|.+ ...+| |||.||..||..|+..+.+||+||+.+...
T Consensus 53 ~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 4679999999876 45778 999999999999999999999999988654
No 25
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.58 E-value=6.2e-16 Score=98.44 Aligned_cols=55 Identities=25% Similarity=0.586 Sum_probs=46.8
Q ss_pred CCcccccccccccccC----CCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529 69 VMGTECAVCLDEVESE----QPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~ 124 (133)
.++.+|+||++.|.++ +....++ |||.||.+||.+|++.+.+||+||+.+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 3467899999999764 4457788 99999999999999999999999999876544
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=88.14 Aligned_cols=52 Identities=21% Similarity=0.520 Sum_probs=41.8
Q ss_pred CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC--Cccccccccccc
Q 037529 67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH--SVCPVCRAKLDS 121 (133)
Q Consensus 67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~v~~ 121 (133)
...++..|+||++.|.++ ..++.|||.||..||..|+..+ ..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 345568899999999863 3455599999999999999865 689999997543
No 27
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=5e-15 Score=85.15 Aligned_cols=53 Identities=19% Similarity=0.494 Sum_probs=44.0
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHhCC--Cccccccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH--SVCPVCRAKLDSHFFN 125 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~v~~~~~~ 125 (133)
...+|+||.+.+..++... . |+|.||..||.+||+++ .+||+||+........
T Consensus 14 ~i~~C~IC~~~i~~g~~C~--~-C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE--T-CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS--S-SCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCC
T ss_pred CCCcCcchhhHcccCCccC--C-CCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCC
Confidence 4578999999998776554 4 99999999999999987 7999999887644433
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-15 Score=89.18 Aligned_cols=53 Identities=21% Similarity=0.505 Sum_probs=43.7
Q ss_pred CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhC-------CCccccccccccccc
Q 037529 67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-------HSVCPVCRAKLDSHF 123 (133)
Q Consensus 67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-------~~~CP~Cr~~v~~~~ 123 (133)
...++.+|+||++.+.+. ..++ |||.||.+|+..|+.. ...||+||+.+....
T Consensus 8 ~~~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred hcccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 345568899999998763 4577 9999999999999986 568999999987643
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=4.9e-15 Score=87.40 Aligned_cols=52 Identities=25% Similarity=0.551 Sum_probs=43.5
Q ss_pred CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhC------CCccccccccccccc
Q 037529 68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK------HSVCPVCRAKLDSHF 123 (133)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~v~~~~ 123 (133)
..++..|+||++.+.++ ..++ |||.||.+|+..|+.. ...||+||+.+....
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 34568899999998763 3677 9999999999999987 668999999987643
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.55 E-value=4e-15 Score=86.68 Aligned_cols=50 Identities=18% Similarity=0.426 Sum_probs=42.9
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC-CCcccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSH 122 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~ 122 (133)
.++..|+||++.|.+ ...++ |||.||..||..|+.. +.+||+||+.+...
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 456889999999876 34567 9999999999999987 77999999988654
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.55 E-value=1.8e-15 Score=92.35 Aligned_cols=51 Identities=29% Similarity=0.716 Sum_probs=42.7
Q ss_pred CCcccccccccccccCCCccc-cCCCCccccHHHHHHHHhCC-Cccccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARL-VPGCNHGFHLQCADSWLSKH-SVCPVCRAKLDSHF 123 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~-lp~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~v~~~~ 123 (133)
.++..|+||++.+.+ .+. ++ |||.||..||..|+..+ ..||+||+.+....
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 346789999999875 334 77 99999999999999987 69999999986543
No 32
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.54 E-value=4.5e-15 Score=83.59 Aligned_cols=55 Identities=20% Similarity=0.455 Sum_probs=43.3
Q ss_pred Cccccccccc-ccccCCCc-cccCCCCccccHHHHHHHHhC-CCccccccccccccccc
Q 037529 70 MGTECAVCLD-EVESEQPA-RLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSHFFN 125 (133)
Q Consensus 70 ~~~~C~ICl~-~~~~~~~~-~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~~~~ 125 (133)
++..|+||++ .+.++... ..++ |||.||.+|+..|+.+ +..||+||+.+......
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 3578999999 77765543 3467 9999999999999765 46899999998765543
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.9e-15 Score=87.40 Aligned_cols=53 Identities=26% Similarity=0.611 Sum_probs=43.9
Q ss_pred CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhC------CCccccccccccccc
Q 037529 67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK------HSVCPVCRAKLDSHF 123 (133)
Q Consensus 67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~v~~~~ 123 (133)
...+..+|+||++.+.+ ...++ |||.||.+|+..|+.. ...||+||+.+....
T Consensus 15 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred HccCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 33456889999999876 34567 9999999999999987 679999999987643
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.52 E-value=4.8e-15 Score=90.17 Aligned_cols=50 Identities=20% Similarity=0.563 Sum_probs=42.1
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH 122 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 122 (133)
+...|+||++.+.++ +..++ |||.||..|+..|+..+..||+||+.+...
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 357899999998862 22347 999999999999999999999999988753
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=81.10 Aligned_cols=44 Identities=30% Similarity=0.708 Sum_probs=36.9
Q ss_pred CCCcccccccccccccCCCccccCCCCccccHHHHHHHHh---CCCccccc
Q 037529 68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS---KHSVCPVC 115 (133)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~---~~~~CP~C 115 (133)
..++..|+||++.+.+ ...++ |||.||..||..|++ .+..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456889999999886 44567 999999999999998 45689998
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.51 E-value=4.1e-15 Score=91.85 Aligned_cols=51 Identities=20% Similarity=0.542 Sum_probs=43.0
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH 122 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 122 (133)
.++..|+||++.+.+ .+..++ |||.||..||..|+..+..||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 456889999999875 233347 999999999999999999999999988754
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.51 E-value=5.8e-15 Score=93.87 Aligned_cols=55 Identities=25% Similarity=0.586 Sum_probs=46.1
Q ss_pred CCcccccccccccccC----CCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529 69 VMGTECAVCLDEVESE----QPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~ 124 (133)
.+...|+||++.+.+. .....++ |||.||..||++|++.+.+||+||+++.....
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 3467899999998763 3346777 99999999999999999999999999876543
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.8e-14 Score=79.15 Aligned_cols=44 Identities=32% Similarity=0.909 Sum_probs=36.4
Q ss_pred CCCcccccccccccccCCCccccCCCCccccHHHHHHHHh---CCCccccc
Q 037529 68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS---KHSVCPVC 115 (133)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~---~~~~CP~C 115 (133)
..++..|+||++.+.++ ..++ |||.||.+||..|+. .+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34568899999999874 4577 999999999999954 46789998
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.50 E-value=4.9e-14 Score=82.13 Aligned_cols=56 Identities=18% Similarity=0.378 Sum_probs=43.4
Q ss_pred CCCcccccccccccccCCC-ccccCCCCccccHHHHHHHHhC-CCcccccccccccccc
Q 037529 68 LVMGTECAVCLDEVESEQP-ARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSHFF 124 (133)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~-~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~~~ 124 (133)
..++.+|+||++.+..++. +..++ |||.||..|+..++.. +..||.||+.+.....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 4556889999999875442 33356 9999999999999854 5689999999876543
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.48 E-value=1.4e-14 Score=91.46 Aligned_cols=48 Identities=25% Similarity=0.535 Sum_probs=41.1
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCC-ccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS-VCPVCRAKLDS 121 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~v~~ 121 (133)
++..|+||++.+.+ ...++ |||.||..||..|+..+. .||+||+.+..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45789999999986 44567 999999999999998654 99999999866
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.47 E-value=6e-14 Score=92.69 Aligned_cols=70 Identities=31% Similarity=0.532 Sum_probs=50.2
Q ss_pred CCCCCHHHHhhCCCcccCC----------CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhC-CCccccccc
Q 037529 49 EGGLSASELDKLPKISGKE----------LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRA 117 (133)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~----------~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~ 117 (133)
..+++...+.+.+...... ..+...|+||++.+.+ .+..++ |||.||..||..|+.. +..||+||.
T Consensus 22 ~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 98 (165)
T 2ckl_B 22 TWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRK 98 (165)
T ss_dssp CCCCCHHHHHCCCCCCCCSCCEEC----CCHHHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCC
T ss_pred cccCCHHHHhcCchhhhccccccccchhhCCCCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCC
Confidence 3455666666554432111 1234689999999886 233347 9999999999999997 779999999
Q ss_pred cccc
Q 037529 118 KLDS 121 (133)
Q Consensus 118 ~v~~ 121 (133)
.+..
T Consensus 99 ~~~~ 102 (165)
T 2ckl_B 99 KLVS 102 (165)
T ss_dssp BCCS
T ss_pred cCCC
Confidence 8854
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.47 E-value=2.3e-14 Score=89.87 Aligned_cols=52 Identities=27% Similarity=0.504 Sum_probs=43.7
Q ss_pred CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCC-cccccccccccc
Q 037529 67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS-VCPVCRAKLDSH 122 (133)
Q Consensus 67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~v~~~ 122 (133)
...++..|+||++.+.++ ..++ |||.||..||..|+..+. +||+||+.+...
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 445568999999998863 4577 999999999999998765 999999988764
No 43
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.45 E-value=5.2e-14 Score=84.40 Aligned_cols=50 Identities=20% Similarity=0.529 Sum_probs=40.5
Q ss_pred CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC--Ccccccccccc
Q 037529 68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH--SVCPVCRAKLD 120 (133)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~v~ 120 (133)
..++..|+||++.|.++ ..++.|||.||..||..|+..+ ..||+||+.+.
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 35568899999999863 3454499999999999999743 58999999873
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.44 E-value=5.1e-14 Score=87.25 Aligned_cols=51 Identities=24% Similarity=0.602 Sum_probs=42.0
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCC---cccccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS---VCPVCRAKLDSHFF 124 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~---~CP~Cr~~v~~~~~ 124 (133)
+...|+||++.+.++ ..++ |||.||..|+..|+..+. .||+||+.+.....
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 356899999998763 3467 999999999999998754 89999998876443
No 45
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.43 E-value=4.4e-14 Score=79.35 Aligned_cols=48 Identities=23% Similarity=0.540 Sum_probs=40.8
Q ss_pred CcccccccccccccCCCcccc--CCCCcc-ccHHHHHHHHhCCCccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLV--PGCNHG-FHLQCADSWLSKHSVCPVCRAKLDS 121 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l--p~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~ 121 (133)
++.+|+||++...+ ...+ | |||. |+.+|+..|...+..||+||+.+..
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 45789999998665 3344 8 9999 8999999999988999999998864
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.43 E-value=3.3e-14 Score=88.80 Aligned_cols=51 Identities=24% Similarity=0.418 Sum_probs=42.9
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHhC-CCcccccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSHFF 124 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~~~ 124 (133)
++..|+||++.+.+ ...++ |||.||..||..|+.. +.+||+||+.+.....
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 35789999999876 34477 9999999999999987 7799999999876543
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.41 E-value=9.8e-14 Score=90.41 Aligned_cols=49 Identities=22% Similarity=0.515 Sum_probs=41.8
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCC-cccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS-VCPVCRAKLDSH 122 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~v~~~ 122 (133)
+...|+||++.+.+ ...++ |||.||..||..|+..+. .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 34689999999876 34578 999999999999999765 899999998765
No 48
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.40 E-value=1e-13 Score=77.56 Aligned_cols=51 Identities=16% Similarity=0.384 Sum_probs=41.0
Q ss_pred CCcccccccccccccCCCccccCCCCcc-ccHHHHHHHHhCCCccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHG-FHLQCADSWLSKHSVCPVCRAKLDS 121 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~ 121 (133)
..+.+|+||++...+.. +..+| |||. |+.+|+..|...+..||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 34578999999865522 22348 9998 9999999999888999999998864
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.40 E-value=3e-14 Score=88.85 Aligned_cols=49 Identities=29% Similarity=0.742 Sum_probs=41.4
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC-CCccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDS 121 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~ 121 (133)
.++..|+||++.+.+ ...++ |||.||..||..|+.. +..||+||+.+..
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 345789999999876 44567 9999999999999976 6689999998864
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.36 E-value=6.1e-13 Score=78.71 Aligned_cols=50 Identities=10% Similarity=-0.037 Sum_probs=44.1
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH 122 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 122 (133)
.+...|+||++-|++ ..+++ |||.|+..||..|+..+.+||+||..+...
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 456889999999987 55778 999999999999999889999999988654
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.35 E-value=4.6e-13 Score=98.53 Aligned_cols=49 Identities=24% Similarity=0.691 Sum_probs=42.7
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHh-CCCccccccccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS-KHSVCPVCRAKLDSHF 123 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~v~~~~ 123 (133)
..+|+||++.+.+ ...+| |||.||..|+..|+. .+.+||+||+.+....
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 4689999999865 56788 999999999999999 7889999999887643
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.35 E-value=1.7e-13 Score=74.89 Aligned_cols=47 Identities=26% Similarity=0.592 Sum_probs=39.1
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH 122 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 122 (133)
.+...|+||++.|.+ ...++ |||.||..|+..| ...||+||+.+...
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 456789999999986 35788 9999999999884 67899999987653
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.34 E-value=7.8e-13 Score=80.51 Aligned_cols=50 Identities=10% Similarity=-0.035 Sum_probs=44.2
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH 122 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 122 (133)
.+...|+||++-|.+ ..+++ |||.|+..||..|+..+.+||+||..+...
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 456889999999987 55778 999999999999999889999999988754
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.33 E-value=3.8e-13 Score=86.74 Aligned_cols=49 Identities=22% Similarity=0.393 Sum_probs=41.2
Q ss_pred CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCC-cccccccccc
Q 037529 68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS-VCPVCRAKLD 120 (133)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~v~ 120 (133)
..+...|+||++.+.++ ..++ |||.||..||..|+..+. .||+||..+.
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 34568899999999874 4567 999999999999998664 8999999763
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.32 E-value=1.5e-12 Score=78.92 Aligned_cols=50 Identities=10% Similarity=0.012 Sum_probs=43.8
Q ss_pred CCcccccccccccccCCCccccCCCC-ccccHHHHHHHHhCCCcccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCN-HGFHLQCADSWLSKHSVCPVCRAKLDSH 122 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 122 (133)
.++..|+||++-|++ .++++ || |.|+..||..|+..+.+||+||..+...
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 456889999999987 45677 99 9999999999999888999999988754
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.30 E-value=3.7e-13 Score=77.62 Aligned_cols=45 Identities=29% Similarity=0.659 Sum_probs=38.8
Q ss_pred CcccccccccccccCCCccccCCCCcc-ccHHHHHHHHhCCCcccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHG-FHLQCADSWLSKHSVCPVCRAKLDSH 122 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 122 (133)
++..|+||++.+.+ ...+| |||. ||.+|+..| ..||+||+.+...
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 45789999998765 56778 9999 999999998 8899999988654
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=4.5e-13 Score=83.75 Aligned_cols=46 Identities=22% Similarity=0.495 Sum_probs=39.2
Q ss_pred CcccccccccccccCCCcccc-CCCCccccHHHHHHHHhCCCccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLV-PGCNHGFHLQCADSWLSKHSVCPVCRAKLDS 121 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 121 (133)
+...|+||++.|.+ ...+ + |||.||..||..|+. ..||+||+.+..
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 45789999999876 3455 7 999999999999987 889999998854
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.25 E-value=1e-12 Score=94.77 Aligned_cols=55 Identities=24% Similarity=0.564 Sum_probs=42.6
Q ss_pred CCcccccccccccccCCCcc-----ccCCCCccccHHHHHHHHhCC-----------Ccccccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPAR-----LVPGCNHGFHLQCADSWLSKH-----------SVCPVCRAKLDSHFF 124 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~-----~lp~C~H~fh~~Ci~~wl~~~-----------~~CP~Cr~~v~~~~~ 124 (133)
....+|+||++.+.++..+. -.+ |||.||..|+.+|++.. .+||+||++++.+..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~-C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAK-CVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTT-CCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCc-cCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 45678999999998744332 234 99999999999999742 369999999876543
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.24 E-value=2.7e-12 Score=85.10 Aligned_cols=52 Identities=27% Similarity=0.500 Sum_probs=43.4
Q ss_pred CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC-Ccccccccccccc
Q 037529 67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH-SVCPVCRAKLDSH 122 (133)
Q Consensus 67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~v~~~ 122 (133)
...+...|+||++.+.++ ..++ |||.||..|+..|+..+ .+||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 345568999999998874 4577 99999999999999864 4999999988764
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=5.8e-12 Score=72.70 Aligned_cols=45 Identities=29% Similarity=0.663 Sum_probs=37.3
Q ss_pred CcccccccccccccCCCccccCCCCcc-ccHHHHHHHHhCCCcccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHG-FHLQCADSWLSKHSVCPVCRAKLDSH 122 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 122 (133)
++.+|+||++.+.+ ...+| |||. ||.+|+.. ...||+||+.+...
T Consensus 24 ~~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 35689999999765 55688 9999 99999965 47899999988764
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.4e-11 Score=69.77 Aligned_cols=47 Identities=28% Similarity=0.685 Sum_probs=38.8
Q ss_pred CCcccccccccccccCCCccccCCCCcc-ccHHHHHHHHhCCCccccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHG-FHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
.+...|.||++...+ +..+| |||. |+.+|+.. ...||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQESF 60 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCEE
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhceE
Confidence 346789999998654 77888 9999 99999984 478999999987643
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=9.5e-12 Score=74.87 Aligned_cols=50 Identities=16% Similarity=0.428 Sum_probs=39.5
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC------Ccccc--cccc-ccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH------SVCPV--CRAK-LDS 121 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~------~~CP~--Cr~~-v~~ 121 (133)
.....|+||++.|.+ .++++.|||+|+..||..|+..+ .+||+ |++. +..
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 456789999999986 33452399999999999999753 48999 9866 543
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=1.1e-11 Score=74.48 Aligned_cols=51 Identities=25% Similarity=0.574 Sum_probs=41.6
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHhC--------CCcccc--cccc--ccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK--------HSVCPV--CRAK--LDS 121 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~--------~~~CP~--Cr~~--v~~ 121 (133)
+..+|+||++++..++.+...+ |||.||.+|+..++.. ...||. |+.. +.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 3578999999998776666567 9999999999999863 237999 9988 654
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.16 E-value=2.6e-11 Score=66.99 Aligned_cols=48 Identities=21% Similarity=0.625 Sum_probs=37.6
Q ss_pred CCcccccccccccccCCCccccCCCC--c---cccHHHHHHHHhC--CCcccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCN--H---GFHLQCADSWLSK--HSVCPVCRAKLD 120 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~--H---~fh~~Ci~~wl~~--~~~CP~Cr~~v~ 120 (133)
.++..|.||+++. ++.+ ++| |. | .||.+|+++|+.. +.+||+||..+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567899999983 3334 577 76 4 8999999999974 578999998764
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.16 E-value=7.9e-12 Score=72.88 Aligned_cols=47 Identities=30% Similarity=0.702 Sum_probs=39.1
Q ss_pred CcccccccccccccCCCccccCCCCcc-ccHHHHHHHHhCCCcccccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHG-FHLQCADSWLSKHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~ 124 (133)
++..|+||++.+.+ ...+| |||. |+.+|+..| ..||+||+.+.....
T Consensus 17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~ 64 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHVQH 64 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEEEE
T ss_pred CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCeEE
Confidence 35789999998765 67788 9999 999999987 499999999876543
No 66
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.11 E-value=3.3e-11 Score=85.15 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=42.8
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC-CCccccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSHF 123 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~~ 123 (133)
.....|+||++-|.+ .+++| |||+|+..||..|+.. +.+||+||.++....
T Consensus 206 ~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 206 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 456889999999987 45678 9999999999999986 446999999886543
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.05 E-value=1.1e-10 Score=77.79 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=43.7
Q ss_pred CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC-Cccccccccccccc
Q 037529 67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH-SVCPVCRAKLDSHF 123 (133)
Q Consensus 67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~v~~~~ 123 (133)
...+...||||++-|.+ ..++| |||.|+..||..|+..+ .+||+||..+....
T Consensus 102 ~ip~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 102 EIPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCcHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 33566889999999987 45667 99999999999999863 57999999886543
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.89 E-value=6.9e-10 Score=61.41 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=43.4
Q ss_pred ccccccccccccCCCcccc-CCCCccccHHHHHHHHhCCCcccccccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLV-PGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNA 126 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l-p~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~~~ 126 (133)
..|+|+++-++++ .++ + +||+|.+.||.+|+..+.+||+.+..+......+
T Consensus 4 ~~CpIs~~~m~dP---V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp CCCTTTCSCCSSE---EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred EEecCCCCCCCCC---EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEE
Confidence 5799999999863 455 6 9999999999999998888999999987765544
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.87 E-value=2.2e-10 Score=83.54 Aligned_cols=45 Identities=33% Similarity=0.787 Sum_probs=38.8
Q ss_pred CcccccccccccccCCCccccCCCCcc-ccHHHHHHHHhCCCcccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHG-FHLQCADSWLSKHSVCPVCRAKLDSH 122 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 122 (133)
++..|+||++.+.+ ...+| |||. ||..|+..| ..||+||..+...
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 45789999999875 66778 9999 999999988 7899999988654
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.84 E-value=1.3e-09 Score=76.18 Aligned_cols=52 Identities=21% Similarity=0.411 Sum_probs=41.0
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHhCC--Ccccc--cccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH--SVCPV--CRAKLDSHFF 124 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~--Cr~~v~~~~~ 124 (133)
....||||++.|+++ ++.+. |||.|+..||..|+..+ ..||+ ||+.+....+
T Consensus 180 ~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred eeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 346799999999763 33345 99999999999999864 47999 9998765443
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.61 E-value=2.1e-08 Score=59.87 Aligned_cols=46 Identities=28% Similarity=0.629 Sum_probs=36.7
Q ss_pred cccccccccccCCCccccCCCCccccHHHHHHHHhC-CCccccccccccc
Q 037529 73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDS 121 (133)
Q Consensus 73 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~ 121 (133)
-|++|--.+. ...+..| |+|+||.+|+..|.++ .++||.|+..|..
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 3677766654 3456788 9999999999999865 6899999998754
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.45 E-value=1.6e-07 Score=65.19 Aligned_cols=51 Identities=20% Similarity=0.509 Sum_probs=41.0
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhCCC--cccccccccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS--VCPVCRAKLDSHFF 124 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~--~CP~Cr~~v~~~~~ 124 (133)
..+|+||.+-...+.... +|+|.||..|+..|++.+. .||.|++..+...+
T Consensus 180 i~~C~iC~~iv~~g~~C~---~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CCBCTTTCSBCSSCEECS---SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCcCcchhhHHhCCcccC---ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 578999999988765443 3999999999999998754 89999987655533
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.40 E-value=0.00011 Score=43.17 Aligned_cols=49 Identities=29% Similarity=0.559 Sum_probs=38.9
Q ss_pred CCcccccccccccccCCCccccCCCC-ccccHHHHHHHHhCCCccccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCN-HGFHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
..-..|-.|+-+.+. ++. |+ |.+|..|+...|..+..||+|...+....
T Consensus 26 ~G~~nCKsCWf~~k~---LV~---C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG---LVE---CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCCCCSSCSCCSS---EEE---CSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred cCcccChhhccccCC---eee---ecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 345679999987543 332 65 99999999999999999999999886543
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.05 E-value=0.0004 Score=41.52 Aligned_cols=34 Identities=15% Similarity=0.391 Sum_probs=27.0
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHH
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSW 105 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w 105 (133)
+..|+||++++..+....-++ |+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 467999998765545455577 9999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.30 E-value=0.0031 Score=34.87 Aligned_cols=46 Identities=26% Similarity=0.572 Sum_probs=33.2
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCC----ccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS----VCPVCRAKL 119 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~----~CP~Cr~~v 119 (133)
.+..|.||.+. ++.+.-- .|...||..|+...+.... .||.|+...
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd-~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCT-HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECS-SSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECC-CCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45679999753 4444444 4889999999998876532 799998654
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.65 E-value=0.02 Score=32.95 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=24.1
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHH
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSW 105 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w 105 (133)
..++.|.||-.- ..++....-- |+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~~-t~~~l~pCRv-C~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVW-TAESLFPCRV-CTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCC-CSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred CCCcccCccccc-cccceecccc-ccccccHhhcccc
Confidence 467889999732 2333333222 8999999999996
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=94.33 E-value=0.024 Score=30.65 Aligned_cols=47 Identities=23% Similarity=0.512 Sum_probs=32.0
Q ss_pred CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhC----CCcccccccc
Q 037529 68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK----HSVCPVCRAK 118 (133)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 118 (133)
...+..|.+|.+. ++.+.-- .|.-.||..|+..=+.. +=.||.|++.
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCD-TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECS-SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEECC-CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456789999873 3433333 48889999999975432 2269999753
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=93.59 E-value=0.017 Score=32.49 Aligned_cols=52 Identities=17% Similarity=0.360 Sum_probs=34.5
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC----CCccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK----HSVCPVCRAKLDS 121 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~v~~ 121 (133)
.+...|.+|......+..+.-- .|.--||..|+..-... .-.||.|+..+..
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD-~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCD-DCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECS-SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCCCCCEEEcC-CCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 3446799998875432334333 48888999999765432 3369999876643
No 79
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=93.31 E-value=0.035 Score=28.72 Aligned_cols=44 Identities=32% Similarity=0.659 Sum_probs=28.7
Q ss_pred cccccccccccCCCccccCCCCccccHHHHHHHHhCC----Cccccccc
Q 037529 73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH----SVCPVCRA 117 (133)
Q Consensus 73 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~Cr~ 117 (133)
.|.||...-..++.+.-- .|...||..|+.+=+... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd-~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD-ECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECT-TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECC-CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488888764444444444 488899999997643321 25999975
No 80
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.80 E-value=0.016 Score=31.59 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=32.9
Q ss_pred CCcccccccccccccCC-CccccCCCCccccHHHHHHHHh-----CCCcccccccc
Q 037529 69 VMGTECAVCLDEVESEQ-PARLVPGCNHGFHLQCADSWLS-----KHSVCPVCRAK 118 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~-~~~~lp~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~ 118 (133)
.++..|++|...+.++. .+.--. |..=||..|+..--. .+-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~-C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDL-CEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSS-SCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccC-CCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 34577999999886544 343333 777899999765321 23479999763
No 81
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.54 E-value=0.02 Score=38.03 Aligned_cols=50 Identities=20% Similarity=0.450 Sum_probs=34.8
Q ss_pred cccccccccccccCC----CccccCCCCccccHHHHHH------HHh-----CCCccccccccccc
Q 037529 71 GTECAVCLDEVESEQ----PARLVPGCNHGFHLQCADS------WLS-----KHSVCPVCRAKLDS 121 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~----~~~~lp~C~H~fh~~Ci~~------wl~-----~~~~CP~Cr~~v~~ 121 (133)
+..|+||...|.+++ .+..- .|..=||..|+.- -+. ..-.||.|+..-..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd-~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCG-KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECT-TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCcCCCCcCccCCcccCCCeEECC-CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 467999999998876 33333 3888999999642 111 15689999986443
No 82
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.41 E-value=0.2 Score=28.36 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=35.0
Q ss_pred Cccccccccccccc-CCCccccCCCCccccHHHHHHHHh-----CCCcccccccccccccccc
Q 037529 70 MGTECAVCLDEVES-EQPARLVPGCNHGFHLQCADSWLS-----KHSVCPVCRAKLDSHFFNA 126 (133)
Q Consensus 70 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~v~~~~~~~ 126 (133)
....| ||...+.+ +..+.--. |..=||..|+.---. ..-.||.|+..-.+.....
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~-C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~~K~ 71 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGL-CQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSIMKN 71 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTT-TCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSCBCCC
T ss_pred CccEE-EcCCccCCCCceEEcCC-CCCcEEeeecCcccccccCCCeEECCCcccccCCCceee
Confidence 34556 99988753 33444443 887899999853211 3457999998765544433
No 83
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.39 E-value=0.011 Score=31.45 Aligned_cols=45 Identities=29% Similarity=0.561 Sum_probs=30.5
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC----Cccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH----SVCPVCRA 117 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~Cr~ 117 (133)
.++..|.+|.+. ++.+.-- .|...||..|+.+=+... -.||.|++
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd-~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECS-SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcC-CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456789999874 4444433 488899999998644332 25888864
No 84
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=92.37 E-value=0.024 Score=34.36 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=26.6
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHh
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS 107 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~ 107 (133)
.+++.|.+|.+.=...+.+.--. |+..||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~-C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTT-CGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSS-SCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCC-CCCCcChHHhCCccc
Confidence 45788999987632222344444 899999999988754
No 85
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=92.31 E-value=0.022 Score=31.30 Aligned_cols=49 Identities=31% Similarity=0.524 Sum_probs=32.7
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC----CCccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK----HSVCPVCRAKLDS 121 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~v~~ 121 (133)
.++..|.||.+. ++.+.-- .|.-.||..|+.+=+.. .-.||.|...-..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 58 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCD-GCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ 58 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECS-SCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCC
T ss_pred CCCCCCccCCCC---CCEEEcC-CCChhhcccccCCCcCcCCCCCeECccccCcccc
Confidence 356789999864 4444333 48889999999864432 2269999865433
No 86
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=92.24 E-value=0.026 Score=30.48 Aligned_cols=47 Identities=23% Similarity=0.492 Sum_probs=31.4
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC----Cccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH----SVCPVCRAKL 119 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~v 119 (133)
.++..|.+|.+. ++.+.-- .|...||..|+..-+... =.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCD-TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCS-SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcC-CCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456789999863 3433333 378899999998644332 2699998643
No 87
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.91 E-value=0.26 Score=40.50 Aligned_cols=51 Identities=12% Similarity=0.047 Sum_probs=42.9
Q ss_pred CCcccccccccccccCCCccccCCCC-ccccHHHHHHHHhCCCccccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCN-HGFHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
.+...|||=++-+.+ ..++| -| +.|-+..|..|+..+.+||.=|.+++...
T Consensus 889 P~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred cHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 456779999999887 55777 77 68999999999999999999999887543
No 88
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=90.60 E-value=0.075 Score=29.64 Aligned_cols=50 Identities=18% Similarity=0.408 Sum_probs=32.3
Q ss_pred CCccccccccccc-ccCCCccccCCCCccccHHHHHHHHhC--CCcccccccc
Q 037529 69 VMGTECAVCLDEV-ESEQPARLVPGCNHGFHLQCADSWLSK--HSVCPVCRAK 118 (133)
Q Consensus 69 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~ 118 (133)
.++..|.||.+.- .+++.+..-..|.-.||..|+..-... .=.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4568899998764 233334443348889999998753221 2269999753
No 89
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=90.54 E-value=0.059 Score=35.56 Aligned_cols=47 Identities=28% Similarity=0.509 Sum_probs=32.6
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHhCC----Ccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH----SVCPVCRAKLD 120 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~v~ 120 (133)
+++.|.+|.+. |+.+..- .|.-.||..|+.+-+... -.||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd-~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCE-KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SSCEECS-SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---CeeeecC-CCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 45779999854 4434333 388899999987765532 26999997543
No 90
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=90.28 E-value=0.36 Score=30.58 Aligned_cols=48 Identities=19% Similarity=0.400 Sum_probs=33.0
Q ss_pred CCCCCcccccccccccccCCCccccCCCCccccHHHHHHHHh---------C--CCccccccc
Q 037529 66 KELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS---------K--HSVCPVCRA 117 (133)
Q Consensus 66 ~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~---------~--~~~CP~Cr~ 117 (133)
.+...++.|.+|-+. ++ +..-..|--+||..|+.+=+. . .=.||.|+.
T Consensus 58 d~Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CTTSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred cCCCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 334567889999975 44 333234888999999997652 1 227999974
No 91
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=90.09 E-value=0.062 Score=31.28 Aligned_cols=55 Identities=16% Similarity=0.334 Sum_probs=34.5
Q ss_pred CCccccccccccc-ccCCCccccCCCCccccHHHHHHHHhC--CCccccccccccccc
Q 037529 69 VMGTECAVCLDEV-ESEQPARLVPGCNHGFHLQCADSWLSK--HSVCPVCRAKLDSHF 123 (133)
Q Consensus 69 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~v~~~~ 123 (133)
.++..|.||.+.- .+++.+..-..|.-.||..|+..-... .=.||.|........
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence 4567899999763 122233333347788999999863322 226999987654433
No 92
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=89.89 E-value=0.52 Score=26.55 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=33.5
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFN 125 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~~ 125 (133)
.....|+-|-..+...+.+.. -+..||.+| ..|-.|++.|....+.
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~~~~~ 58 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWPGGYE 58 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCTTSEE
T ss_pred CCCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCCCcee
Confidence 345789999999876655542 678899777 5688888888765544
No 93
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=89.83 E-value=0.15 Score=29.07 Aligned_cols=52 Identities=25% Similarity=0.448 Sum_probs=31.8
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHh------CCCcccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS------KHSVCPVCRAKLD 120 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~------~~~~CP~Cr~~v~ 120 (133)
.+...|.+|...|.....-.--..||.+|+..|....+. ....|-.|...+.
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 345679999999874321111113999999999765421 1125777765544
No 94
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=89.59 E-value=0.03 Score=37.72 Aligned_cols=47 Identities=28% Similarity=0.465 Sum_probs=32.5
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC----Cccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH----SVCPVCRAKL 119 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~v 119 (133)
.++..|.+|... ++ +..-..|...||..|+.+-+... -.||.|+..-
T Consensus 5 ~~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 456789999854 33 33333488899999998765432 2699998753
No 95
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=89.45 E-value=0.021 Score=30.74 Aligned_cols=47 Identities=28% Similarity=0.569 Sum_probs=32.1
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHhC----CCcccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK----HSVCPVCRAKLD 120 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~v~ 120 (133)
++..|.+|... ++.+.-- .|.-.||..|+.+=+.. .-.||.|+....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCEECS-SSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcC-CCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45789999874 4444444 48889999999864433 226999976543
No 96
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.20 E-value=0.19 Score=29.24 Aligned_cols=47 Identities=26% Similarity=0.438 Sum_probs=32.2
Q ss_pred CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC----Ccccccccc
Q 037529 68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH----SVCPVCRAK 118 (133)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~ 118 (133)
..++..|.+|... ++.+.-- .|.-.||..|+.+=+... -.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD-~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECT-TSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECC-CCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3456789999975 4434333 377889999997755432 269999854
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=89.04 E-value=0.62 Score=28.07 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=22.0
Q ss_pred ccccccccccc------ccCCCccccCCCCccccHHHHH
Q 037529 71 GTECAVCLDEV------ESEQPARLVPGCNHGFHLQCAD 103 (133)
Q Consensus 71 ~~~C~ICl~~~------~~~~~~~~lp~C~H~fh~~Ci~ 103 (133)
...|.+|+..- ..++.+.-.. |+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~-C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCAD-CGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTT-TCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhh-cCCCCCCchhc
Confidence 46799998753 1223444444 99999999995
No 98
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=89.00 E-value=0.098 Score=31.01 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=31.2
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhC---CCccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK---HSVCPVCRA 117 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~---~~~CP~Cr~ 117 (133)
...| ||-.....+..+.--. |.--||..|+..=... .-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~-C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDK-CSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTT-TCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCC-CCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3557 8987766666555554 8899999998653222 237999974
No 99
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=87.87 E-value=0.43 Score=26.00 Aligned_cols=33 Identities=33% Similarity=0.694 Sum_probs=24.4
Q ss_pred cccccccccccccCCCccccC-CCCccccHHHHH
Q 037529 71 GTECAVCLDEVESEQPARLVP-GCNHGFHLQCAD 103 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp-~C~H~fh~~Ci~ 103 (133)
...|++|...+.+++..+.-. .|.--||..|+.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 467999999988766554433 488789999964
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=87.61 E-value=0.082 Score=32.09 Aligned_cols=46 Identities=28% Similarity=0.819 Sum_probs=29.5
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCC----Cccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH----SVCPVCRA 117 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~Cr~ 117 (133)
..|.+|.+.-.+++.+..-..|...||..|+++-+... =.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 46888886522323333333488999999987654432 26999975
No 101
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.21 E-value=0.051 Score=31.91 Aligned_cols=49 Identities=24% Similarity=0.479 Sum_probs=32.6
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC----CCcccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK----HSVCPVCRAK 118 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 118 (133)
.++..|.||...-..+..+..- .|...||..|+.+=+.. .=.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD-~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCD-GCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECT-TTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcC-CCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3456799999875433344333 48889999999753332 2269999864
No 102
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=87.05 E-value=0.55 Score=26.82 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=31.7
Q ss_pred CCcccccccccccccCCCccccCCCCccccHHHHHHHHh--------CCCcccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS--------KHSVCPVCRAKLD 120 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~--------~~~~CP~Cr~~v~ 120 (133)
.+...|.+|...|..-..-.--..||++|+.+|...... ....|-.|...+.
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 345789999999875321111113999999999765421 1225666655443
No 103
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=86.44 E-value=0.83 Score=28.43 Aligned_cols=50 Identities=18% Similarity=0.390 Sum_probs=32.5
Q ss_pred cCCCCCcccccccccccccCCCccccCCCCccccHHHHHHHH------h-----CCCcccccccc
Q 037529 65 GKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWL------S-----KHSVCPVCRAK 118 (133)
Q Consensus 65 ~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl------~-----~~~~CP~Cr~~ 118 (133)
.++...++.|.+|-+. ++ +..-..|-..||.+|+.+-+ + ..=.|+.|+..
T Consensus 51 ~d~Dg~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 51 RDSDGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp BCTTSCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred cCCCCCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3344556789999975 33 32323488999999999742 1 12279999653
No 104
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=85.68 E-value=2.6 Score=22.04 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 037529 4 SVILALFLPCAGMSLV 19 (133)
Q Consensus 4 ~~~l~~~~~~~~~~~~ 19 (133)
.++++++...+.++++
T Consensus 14 iIi~svl~GLllL~li 29 (54)
T 2knc_A 14 WVLVGVLGGLLLLTIL 29 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 105
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=85.67 E-value=0.41 Score=25.62 Aligned_cols=43 Identities=21% Similarity=0.477 Sum_probs=28.6
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVC 115 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~C 115 (133)
..|--|...+.+... ..-++|++.|+.+|=.--=++=.+||.|
T Consensus 16 ~~C~~C~~~~~~~~~-y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHV-YVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEE-ECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCcc-EECCccCcCcccchhHHHHhhccCCcCC
Confidence 459999999864332 3344599999999943322233579987
No 106
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=85.63 E-value=0.093 Score=28.96 Aligned_cols=49 Identities=24% Similarity=0.446 Sum_probs=31.4
Q ss_pred CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHh---CCCccccccc
Q 037529 67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS---KHSVCPVCRA 117 (133)
Q Consensus 67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~---~~~~CP~Cr~ 117 (133)
...+...| ||-..+..+..+.--. |..=||..|+..--. ..-.||.|+.
T Consensus 15 ~~~~~~~C-iC~~~~~~~~MIqCd~-C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFAGRPMIECNE-CHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTTCCCS-TTCCCCTTCCEEECTT-TCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCceEe-ECCCcCCCCCEEECCC-CCccccccccCcCcccCCCcEECCCCCC
Confidence 33455678 9988765434454444 888899999864221 2347999875
No 107
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=85.57 E-value=0.13 Score=34.19 Aligned_cols=45 Identities=27% Similarity=0.519 Sum_probs=30.8
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhC----CCccccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK----HSVCPVCRAKL 119 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~v 119 (133)
++.|.+|.+. ++.+..- .|.-.||..|+.+=+.. .-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~ll~Cd-~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCCT-TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeECC-CCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4679999864 4444444 38889999999764432 22699998753
No 108
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=84.80 E-value=0.08 Score=31.83 Aligned_cols=50 Identities=28% Similarity=0.576 Sum_probs=32.9
Q ss_pred ccccccccccccCCCccccC-CCCccccHHHHHHH------H--h--CCCccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVP-GCNHGFHLQCADSW------L--S--KHSVCPVCRAKLDS 121 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp-~C~H~fh~~Ci~~w------l--~--~~~~CP~Cr~~v~~ 121 (133)
..|.||...+.++.....-. .|.-=||.+|+.-= + + .+-.||.|+..-..
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 56999999987655443321 37777999996432 1 0 23479999976543
No 109
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=84.45 E-value=0.69 Score=26.80 Aligned_cols=52 Identities=17% Similarity=0.384 Sum_probs=33.3
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHh------CCCccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS------KHSVCPVCRAKLDS 121 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~------~~~~CP~Cr~~v~~ 121 (133)
+...|.+|...|..-..-..-..||++|+..|...... ....|-.|...+..
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 76 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISK 76 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHH
Confidence 34679999999874321111224999999999776531 12357777766544
No 110
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=84.30 E-value=3 Score=21.74 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037529 3 VSVILALFLPCAGMSLVFIV 22 (133)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~ 22 (133)
+++++|++...+.++++.++
T Consensus 10 WiIi~svl~GLLLL~Lii~~ 29 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILA 29 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555444444433333
No 111
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.59 E-value=0.14 Score=29.70 Aligned_cols=52 Identities=17% Similarity=0.436 Sum_probs=34.4
Q ss_pred ccccccccccccc-CCCccccCCCCccccHHHHHHHHh--------CCCcccccccccccc
Q 037529 71 GTECAVCLDEVES-EQPARLVPGCNHGFHLQCADSWLS--------KHSVCPVCRAKLDSH 122 (133)
Q Consensus 71 ~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~--------~~~~CP~Cr~~v~~~ 122 (133)
+..|.+|...-.. +..+..-..|...||..|+.+=+. ..=.||.|+......
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 5679999986442 233444334888999999986543 123799998765443
No 112
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=83.39 E-value=0.73 Score=25.32 Aligned_cols=43 Identities=19% Similarity=0.417 Sum_probs=30.8
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
...|+-|-+.+..++.+... -|..||.+| ..|-.|++.+....
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~~ 53 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEGL 53 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGGGC
T ss_pred CCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCCCC
Confidence 46799999998765544322 678899776 56888888887654
No 113
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=83.25 E-value=0.25 Score=32.13 Aligned_cols=47 Identities=19% Similarity=0.482 Sum_probs=31.2
Q ss_pred CcccccccccccccCC-CccccCCCCccccHHHHHHHH-----hCCCcccccccc
Q 037529 70 MGTECAVCLDEVESEQ-PARLVPGCNHGFHLQCADSWL-----SKHSVCPVCRAK 118 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~ 118 (133)
+...| +|...+.++. .+..- .|.--||..|+..-- ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd-~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCD-RCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECT-TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECC-CCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45678 9998875443 34333 388889999985321 124479999864
No 114
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=83.03 E-value=4.8 Score=23.31 Aligned_cols=51 Identities=18% Similarity=0.417 Sum_probs=35.5
Q ss_pred CcccccccccccccCC--Ccccc-CCCCccccHHHHHHHHhC-CCcccccccccc
Q 037529 70 MGTECAVCLDEVESEQ--PARLV-PGCNHGFHLQCADSWLSK-HSVCPVCRAKLD 120 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~--~~~~l-p~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~ 120 (133)
....|.||-+++.... .+.+. -.|+--.|+.|++-=.+. ++.||-|++...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4578999999975433 22221 125566899999876655 568999999875
No 115
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=83.02 E-value=0.71 Score=25.58 Aligned_cols=34 Identities=12% Similarity=0.321 Sum_probs=22.7
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHH
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADS 104 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~ 104 (133)
+..|.+|...|..-..-.--..||.+|+.+|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3589999999874321111113999999999653
No 116
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=82.26 E-value=0.19 Score=30.09 Aligned_cols=21 Identities=29% Similarity=0.754 Sum_probs=14.6
Q ss_pred CCccccHHHHHHHHhCCCcccccccc
Q 037529 93 CNHGFHLQCADSWLSKHSVCPVCRAK 118 (133)
Q Consensus 93 C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 118 (133)
||+.|. .=+.....||.|++.
T Consensus 73 CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 73 CGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp TCCBCC-----CCSSCCSSCSSSCCC
T ss_pred CcCeec-----ccCCCCCCCcCCCCC
Confidence 999991 112345689999985
No 117
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=82.24 E-value=0.75 Score=28.37 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=23.9
Q ss_pred CcccccccccccccCC---CccccCCCCccccHHHHHHH
Q 037529 70 MGTECAVCLDEVESEQ---PARLVPGCNHGFHLQCADSW 105 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~---~~~~lp~C~H~fh~~Ci~~w 105 (133)
+...|.+|...|.... +.+ .||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR---~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCR---QCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECT---TTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCC---CCCeEEChHHhCCc
Confidence 3467999999987532 233 39999999996543
No 118
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.00 E-value=0.69 Score=25.07 Aligned_cols=42 Identities=21% Similarity=0.443 Sum_probs=29.0
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
..|+-|-+.+..++.+.. . -|..||.+| ..|-.|++.|....
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~~~ 47 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLE-Y-GGQTWHEHC--------FLCSGCEQPLGSRS 47 (72)
T ss_dssp CBCSSSCCBCCSSSCEEC-S-TTCCEETTT--------CBCTTTCCBTTTSC
T ss_pred CCCccCCCccccCccEEE-E-CccccCccc--------CeECCCCCcCCCCc
Confidence 568889888876543322 2 678888766 46888888876543
No 119
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=81.70 E-value=0.51 Score=26.01 Aligned_cols=43 Identities=19% Similarity=0.392 Sum_probs=31.8
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~ 124 (133)
...|+-|-+.+..++.+. . -+..||.+| ..|..|++.|....+
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~~~~ 51 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--S-LGKDWHKFC--------LKCERCSKTLTPGGH 51 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--E-TTEEEETTT--------CBCSSSCCBCCTTSC
T ss_pred CCCCcCCCCEeECCeEEE--E-CCeEeeCCC--------CCCCCCCCccCCCce
Confidence 467999999988666543 2 678899776 568999988876533
No 120
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=80.88 E-value=0.44 Score=22.50 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=11.1
Q ss_pred CcccccccccccccCC
Q 037529 70 MGTECAVCLDEVESEQ 85 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~ 85 (133)
++..||+|+.++...+
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3577888888776543
No 121
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=80.77 E-value=0.43 Score=25.81 Aligned_cols=51 Identities=18% Similarity=0.507 Sum_probs=33.0
Q ss_pred CCccccccccccccc-CCCccccCCCCccccHHHHHHHHh-------CCCccccccccc
Q 037529 69 VMGTECAVCLDEVES-EQPARLVPGCNHGFHLQCADSWLS-------KHSVCPVCRAKL 119 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~v 119 (133)
.++..|.+|...... +..+..-..|.-.||..|+..=+. ..=.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 456789999987532 233333334888999999886321 223799997643
No 122
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.56 E-value=1 Score=25.63 Aligned_cols=32 Identities=16% Similarity=0.393 Sum_probs=23.3
Q ss_pred CcccccccccccccCC---CccccCCCCccccHHHHHH
Q 037529 70 MGTECAVCLDEVESEQ---PARLVPGCNHGFHLQCADS 104 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~---~~~~lp~C~H~fh~~Ci~~ 104 (133)
+...|.+|...|..-. +.+ .||.+|+..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR---~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCS---NCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECS---SSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhc---CCCcEEChhhcCC
Confidence 3468999999986432 232 3999999999654
No 123
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=80.43 E-value=0.15 Score=31.38 Aligned_cols=48 Identities=15% Similarity=0.436 Sum_probs=30.1
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAK 118 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 118 (133)
...|..|-..|..-..-..-.+||.+||..|..........|-.|...
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 467999999987432111112499999999977665556678888654
No 124
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=80.40 E-value=1.1 Score=24.20 Aligned_cols=44 Identities=20% Similarity=0.390 Sum_probs=29.7
Q ss_pred ccccccccccccc--CCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529 71 GTECAVCLDEVES--EQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 71 ~~~C~ICl~~~~~--~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~ 124 (133)
...|+-|-+.+.. ++.+. .. -+..||.+| ..|-.|++.|....+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~-~a-~~~~wH~~C--------F~C~~C~~~L~~~~f 50 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYI-SF-EERQWHNDC--------FNCKKCSLSLVGRGF 50 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCE-EC-SSCEECTTT--------CBCSSSCCBCTTSCC
T ss_pred CCCCcCCCccccCCCCcceE-EE-CCcccCccc--------CEeccCCCcCCCCcc
Confidence 3568999988875 33332 22 678899776 468888888865443
No 125
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=80.35 E-value=0.96 Score=26.11 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=34.7
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHh-------CCCccccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS-------KHSVCPVCRAKLDSHF 123 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~v~~~~ 123 (133)
+...|.+|...|..-..-.--..||++|+..|....+. ....|-.|...+....
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~~ 68 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGS 68 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHCC
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhcc
Confidence 34689999999875321111113999999999765321 1236888887765543
No 126
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=80.11 E-value=0.12 Score=29.27 Aligned_cols=44 Identities=30% Similarity=0.747 Sum_probs=27.0
Q ss_pred cccccccccccCCCccccCCCCccccHHHHHHHHhC----C-Cccccccc
Q 037529 73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK----H-SVCPVCRA 117 (133)
Q Consensus 73 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~-~~CP~Cr~ 117 (133)
.|.+|...-..+..+ .-..|...||..|+.+-|.. . =.||.|++
T Consensus 28 ~C~vC~~~~d~~~ll-~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEE-ECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCccee-EeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466776653333333 32247889999999865543 1 36998875
No 127
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=80.02 E-value=1.4 Score=23.83 Aligned_cols=41 Identities=32% Similarity=0.725 Sum_probs=23.8
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH 122 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 122 (133)
..|+-|-+.+..++... .. -+..||.+| ..|-.|++.|...
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a-~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGV-VA-LDRVFHVGC--------FVCSTCRAQLRGQ 46 (72)
T ss_dssp CCCSSSCSCCCSSSCCE-EC-SSSEECTTT--------CBCSSSCCBCTTS
T ss_pred CCCccCCCccCCCceEE-EE-CCCeEcccC--------CcccccCCcCCcC
Confidence 45777777766533222 22 566777655 4577777776543
No 128
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=80.02 E-value=0.32 Score=25.15 Aligned_cols=44 Identities=18% Similarity=0.399 Sum_probs=27.8
Q ss_pred cccccccccccCCCccccC-CCCccccHHHHHHH----HhCCCcccccc
Q 037529 73 ECAVCLDEVESEQPARLVP-GCNHGFHLQCADSW----LSKHSVCPVCR 116 (133)
Q Consensus 73 ~C~ICl~~~~~~~~~~~lp-~C~H~fh~~Ci~~w----l~~~~~CP~Cr 116 (133)
.|.+|...+.+++..+.-. .|.-=||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778988886555443322 27777999996532 12456788885
No 129
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.60 E-value=0.71 Score=25.02 Aligned_cols=42 Identities=14% Similarity=0.421 Sum_probs=28.6
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
..|+-|-+.+..++.+... -|..||.+| ..|-.|++.|....
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~~ 47 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGTKS 47 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCSSS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCCCc
Confidence 5688888888765433322 567888666 45888888776553
No 130
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=79.44 E-value=1.2 Score=30.28 Aligned_cols=51 Identities=20% Similarity=0.447 Sum_probs=31.3
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHh--------CCCcccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS--------KHSVCPVCRAKLD 120 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~--------~~~~CP~Cr~~v~ 120 (133)
++..|.+|...|..-..-.--..||++||..|...... ....|-.|...+.
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 35689999999874321111124999999999765421 1225666665543
No 131
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.27 E-value=1.4 Score=24.61 Aligned_cols=41 Identities=24% Similarity=0.560 Sum_probs=30.8
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS 121 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 121 (133)
....|+-|-+.+.+++.+.. -+..||.+| ..|-.|++.|..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 54 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILTG 54 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcCC
Confidence 34679999999877665543 578899776 568899988864
No 132
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=79.17 E-value=1.2 Score=30.06 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=23.8
Q ss_pred CcccccccccccccCC---CccccCCCCccccHHHHHH
Q 037529 70 MGTECAVCLDEVESEQ---PARLVPGCNHGFHLQCADS 104 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~---~~~~lp~C~H~fh~~Ci~~ 104 (133)
++..|.+|...|..-. +.+ .||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr---~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCR---NCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECT---TTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccC---CcCCEEChHHhCC
Confidence 4579999999987432 333 3999999999654
No 133
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.41 E-value=4 Score=23.14 Aligned_cols=42 Identities=24% Similarity=0.504 Sum_probs=27.3
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
...|+-|-+.+...+.+ .. -+..||.+| ..|-.|++.|....
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~~~ 56 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LA-NQQVFHISC--------FRCSYCNNKLSLGT 56 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--EC-SSSEEETTT--------CBCTTTCCBCCTTT
T ss_pred CCcCccCCCccCCceeE--EE-CCCEECCCC--------CeeCCCCCCCCCCC
Confidence 45688888887765543 22 667788666 45777777776543
No 134
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.94 E-value=0.75 Score=25.85 Aligned_cols=46 Identities=22% Similarity=0.447 Sum_probs=30.3
Q ss_pred cccccccccccccCCCcccc--CCCCccccHHHHHHHHh---------CCCcccccccc
Q 037529 71 GTECAVCLDEVESEQPARLV--PGCNHGFHLQCADSWLS---------KHSVCPVCRAK 118 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l--p~C~H~fh~~Ci~~wl~---------~~~~CP~Cr~~ 118 (133)
...| ||-.....+..+.-- . |..=||..|+.---. .+..||.|+..
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~-C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPR-CHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTT-TCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CEEe-ECCCcCCCCCEEEECCcc-CCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 4567 798875555444433 3 888899999864211 24579999864
No 135
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.88 E-value=0.26 Score=27.86 Aligned_cols=45 Identities=29% Similarity=0.618 Sum_probs=28.6
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhC-----CCccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-----HSVCPVCRA 117 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 117 (133)
..|.+|...-..++.+.-- .|...||..|+.+=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD-~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCD-ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECS-SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcC-CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 4788998653333333333 48889999998854332 126888864
No 136
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=76.31 E-value=0.86 Score=27.40 Aligned_cols=46 Identities=22% Similarity=0.478 Sum_probs=27.9
Q ss_pred CCcccccccccccccCCCcccc-CCCCccccHHHHHHHHhCCC----ccccccccc
Q 037529 69 VMGTECAVCLDEVESEQPARLV-PGCNHGFHLQCADSWLSKHS----VCPVCRAKL 119 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l-p~C~H~fh~~Ci~~wl~~~~----~CP~Cr~~v 119 (133)
.+++.|.+|.+ .++.+.-- +.|...||..|+. |.... .||.|+-.+
T Consensus 13 ~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 13 MHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 45678999984 23333222 0277899999987 44321 577665433
No 137
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.13 E-value=1.3 Score=24.64 Aligned_cols=42 Identities=14% Similarity=0.401 Sum_probs=30.2
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
..|+.|-+.+..++.+.. . -+..||.+| ..|-.|++.|....
T Consensus 16 ~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~~~ 57 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVE-Y-KGTVWHKDC--------FTCSNCKQVIGTGS 57 (82)
T ss_dssp CBCSSSCCBCCSSSCEEE-C-SSCEEETTT--------CCCSSSCCCCTTSC
T ss_pred CcCccCCcccccCceEEE-E-Ccccccccc--------CchhhCCCccCCCc
Confidence 579999998886665432 2 678899776 46888888886653
No 138
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=75.01 E-value=0.27 Score=27.19 Aligned_cols=44 Identities=30% Similarity=0.747 Sum_probs=26.9
Q ss_pred cccccccccccCCCccccCCCCccccHHHHHHHHhC-----CCccccccc
Q 037529 73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-----HSVCPVCRA 117 (133)
Q Consensus 73 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 117 (133)
.|.+|...-..++.+ .-..|...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll-~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEE-ECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEE-EcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 567777543333333 32348889999999854432 226888874
No 139
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=73.89 E-value=0.87 Score=25.02 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=5.6
Q ss_pred cccccccccccc
Q 037529 72 TECAVCLDEVES 83 (133)
Q Consensus 72 ~~C~ICl~~~~~ 83 (133)
..|..|-..+..
T Consensus 28 F~C~~C~~~L~~ 39 (76)
T 1iml_A 28 LKCEKCGKTLTS 39 (76)
T ss_dssp CBCTTTCCBCCT
T ss_pred CCccccCccCCC
Confidence 345555544443
No 140
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.78 E-value=1.5 Score=24.09 Aligned_cols=41 Identities=17% Similarity=0.420 Sum_probs=28.4
Q ss_pred cccccccccccc--CCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529 72 TECAVCLDEVES--EQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH 122 (133)
Q Consensus 72 ~~C~ICl~~~~~--~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 122 (133)
..|+-|-+.+.. ++... .. -+..||.+| ..|-.|+++|...
T Consensus 6 ~~C~~C~~~I~~~g~~~~~-~a-~~~~wH~~C--------F~C~~C~~~L~~~ 48 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFI-CF-QDSQWHSEC--------FNCGKCSVSLVGK 48 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEE-EE-TTEEEEGGG--------CBCTTTCCBCSSS
T ss_pred CCCccCCCcccCCCCceeE-EE-CCcccCccc--------CChhhCCCcCCCC
Confidence 569999988875 33332 22 678899877 4688888887644
No 141
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=73.48 E-value=0.78 Score=20.64 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=9.0
Q ss_pred CCccccccccccc
Q 037529 109 HSVCPVCRAKLDS 121 (133)
Q Consensus 109 ~~~CP~Cr~~v~~ 121 (133)
+..||+|+..+..
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 4478999876643
No 142
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=73.09 E-value=0.65 Score=25.92 Aligned_cols=42 Identities=33% Similarity=0.663 Sum_probs=27.9
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
...|+.|-+.+.+++.+.. -+..||.+| ..|-.|+++|....
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~~~ 48 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDSTT 48 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECSSC
T ss_pred CCcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCCCC
Confidence 3568888888776554322 667888665 45778888776553
No 143
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.85 E-value=1.5 Score=25.54 Aligned_cols=45 Identities=24% Similarity=0.566 Sum_probs=27.4
Q ss_pred CcccccccccccccCCCccccCC--CC-ccccHHHHHHHHhC----CCccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPG--CN-HGFHLQCADSWLSK----HSVCPVCRAKL 119 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~~v 119 (133)
+...| ||-.... ++.+. -.+ |. .-||..|+. |.. +-.||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g~MI~-CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIG-CDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCC-CSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEeE-ecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34557 9988643 44332 223 44 569999987 332 23799998643
No 144
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.76 E-value=3.6 Score=22.70 Aligned_cols=41 Identities=24% Similarity=0.453 Sum_probs=28.6
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
...|+-|-+.+. +..+ .. -|..||.+| ..|-.|++.|....
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~~~ 55 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IF-KNDPYHPDH--------FNCANCGKELTADA 55 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CC-SSSCCCTTT--------SBCSSSCCBCCTTC
T ss_pred CCCCccCCCEec-ceEE--EE-CcceeCCCC--------CEeCCCCCccCCCC
Confidence 467999998877 3332 22 677888766 56888888887653
No 145
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=72.74 E-value=1.7 Score=25.68 Aligned_cols=11 Identities=27% Similarity=0.905 Sum_probs=10.2
Q ss_pred ccHHHHHHHHh
Q 037529 97 FHLQCADSWLS 107 (133)
Q Consensus 97 fh~~Ci~~wl~ 107 (133)
||.+|+..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 146
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=72.57 E-value=1.7 Score=25.60 Aligned_cols=11 Identities=36% Similarity=0.942 Sum_probs=10.2
Q ss_pred ccHHHHHHHHh
Q 037529 97 FHLQCADSWLS 107 (133)
Q Consensus 97 fh~~Ci~~wl~ 107 (133)
||.+|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 147
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=72.56 E-value=1.9 Score=23.52 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=24.8
Q ss_pred CcccccccccccccCCCccccCCC-CccccHHHHHHH
Q 037529 70 MGTECAVCLDEVESEQPARLVPGC-NHGFHLQCADSW 105 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C-~H~fh~~Ci~~w 105 (133)
+..-|.||.++ ..++.+. | |-+||..|..+-
T Consensus 7 e~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 34669999998 5588887 9 689999998774
No 148
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=72.20 E-value=1.4 Score=23.33 Aligned_cols=41 Identities=20% Similarity=0.465 Sum_probs=28.4
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~ 124 (133)
..|+-|-+.+. ++. +.. -|..||.+| ..|-.|++.+....+
T Consensus 6 ~~C~~C~~~I~-~~~--~~a-~~~~~H~~C--------F~C~~C~~~L~~~~~ 46 (66)
T 1nyp_A 6 PICGACRRPIE-GRV--VNA-MGKQWHVEH--------FVCAKCEKPFLGHRH 46 (66)
T ss_dssp CEETTTTEECC-SCE--ECC-TTSBEETTT--------CBCTTTCCBCSSSCC
T ss_pred CCCcccCCEec-ceE--EEE-CccccccCc--------CEECCCCCCCCCCce
Confidence 56899988887 332 232 678889766 568888888865433
No 149
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=71.49 E-value=1.6 Score=19.85 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=18.0
Q ss_pred ccccccccccccCCCccccCCCCccccHHH
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQC 101 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~C 101 (133)
..|+.|-...-..+.+.. -|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGG
T ss_pred CcCCccCCEEecceeEEE---CCeEecccC
Confidence 468888877655444432 577888877
No 150
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=71.40 E-value=1.4 Score=24.30 Aligned_cols=45 Identities=24% Similarity=0.541 Sum_probs=27.2
Q ss_pred CcccccccccccccCCCccccCC--CC-ccccHHHHHHHHhC----CCccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPG--CN-HGFHLQCADSWLSK----HSVCPVCRAKL 119 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~~v 119 (133)
+...| ||-.... +..+ .-.+ |. .-||..|+. |.. +-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~MI-~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEE-CCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEe-EeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34567 8987532 4333 2223 44 579999987 332 23799998643
No 151
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.94 E-value=2.3 Score=23.58 Aligned_cols=46 Identities=20% Similarity=0.422 Sum_probs=31.0
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHH---------HhCCCcccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSW---------LSKHSVCPVCRAK 118 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w---------l~~~~~CP~Cr~~ 118 (133)
...| ||...+..+..+.--. |..=||..|+.-- ...+..||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~-C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDR-CEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSS-SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCC-CCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3457 8988876445554444 8888999998421 1246689999864
No 152
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=70.47 E-value=0.19 Score=30.54 Aligned_cols=47 Identities=21% Similarity=0.552 Sum_probs=30.5
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCC----Cccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH----SVCPVCRAKL 119 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~v 119 (133)
..|.||...-..++.+.-- .|...||..|+.+=+... =.||.|+..+
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd-~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCD-DCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCCTTTTCCTTTTTEEECS-SSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CccCcccccCCCCceEEcC-CCCccccccccCCCccCCCCCCeECccccchh
Confidence 3588888764444444434 388999999988643331 2599997654
No 153
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=70.46 E-value=1.9 Score=26.10 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=5.4
Q ss_pred ccccccccccc
Q 037529 73 ECAVCLDEVES 83 (133)
Q Consensus 73 ~C~ICl~~~~~ 83 (133)
.|+-|-..+..
T Consensus 10 ~C~~C~~~I~~ 20 (123)
T 2l3k_A 10 LCASCDKRIRA 20 (123)
T ss_dssp CCSSSSCCCCT
T ss_pred cccCCCCeecC
Confidence 35555555443
No 154
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.91 E-value=2.3 Score=22.70 Aligned_cols=41 Identities=24% Similarity=0.645 Sum_probs=26.6
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~ 124 (133)
..|+-|-+.+.. +. +.. -+..||.+| ..|-.|++.|....+
T Consensus 6 ~~C~~C~~~I~~-~~--~~a-~~~~~H~~C--------F~C~~C~~~L~~~~~ 46 (70)
T 2d8z_A 6 SGCVQCKKPITT-GG--VTY-REQPWHKEC--------FVCTACRKQLSGQRF 46 (70)
T ss_dssp CBCSSSCCBCCS-SE--EES-SSSEEETTT--------SBCSSSCCBCTTSCC
T ss_pred CCCcccCCeecc-ce--EEE-CccccCCCC--------CccCCCCCcCCcCce
Confidence 568888887764 22 222 677888666 467888887765443
No 155
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=69.91 E-value=0.68 Score=31.62 Aligned_cols=45 Identities=29% Similarity=0.666 Sum_probs=26.0
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhC-----CCccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-----HSVCPVCRA 117 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 117 (133)
..|.+|...-..++.+..- .|...||..|+.+=|.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD-~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCD-ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECS-SSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcC-CCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3688887653333434333 48889999999864432 126999975
No 156
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.82 E-value=3.1 Score=22.99 Aligned_cols=42 Identities=29% Similarity=0.581 Sum_probs=28.8
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~ 124 (133)
...|+-|-+.+.+ .. +.. -+..||.+| ..|..|++.|....+
T Consensus 15 ~~~C~~C~~~I~~-~~--~~a-~~~~~H~~C--------F~C~~C~~~L~~~~f 56 (81)
T 2dlo_A 15 LEKCATCSQPILD-RI--LRA-MGKAYHPGC--------FTCVVCHRGLDGIPF 56 (81)
T ss_dssp CCBCTTTCCBCCS-CC--EEE-TTEEECTTT--------CBCSSSCCBCTTSCE
T ss_pred CCccccCCCeecc-ee--EEE-CCccccHHh--------cCcccCCCccCCCee
Confidence 4678899888773 22 222 678888766 568899888875433
No 157
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=69.37 E-value=0.97 Score=33.38 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=0.0
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHh-------CCCccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS-------KHSVCPVCRAKL 119 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~v 119 (133)
+...|.+|-..|.....-..-..||++||..|....+. ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 35679999999864321111113999999999877642 123577776554
No 158
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=69.36 E-value=1.8 Score=23.18 Aligned_cols=44 Identities=18% Similarity=0.416 Sum_probs=31.8
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
....|+-|-..+..++.+.. . -|..||.+|. .|-.|++.+....
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~-~~~~~H~~CF--------~C~~C~~~L~~~~ 53 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-S-NGELYHEQCF--------VCAQCFQQFPEGL 53 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-E-TTEEEETTTS--------SCTTTCCCCGGGC
T ss_pred CCccchhcCccccCCceEEE-e-CcCeeCcCCC--------cccCCCCCCCCCC
Confidence 34679999999887665433 2 6778997773 6888988887653
No 159
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=69.30 E-value=4 Score=26.28 Aligned_cols=48 Identities=17% Similarity=0.475 Sum_probs=31.3
Q ss_pred CCCCCcccccccccccccCCCccccC--CCCccccHHHHHHHHhCCC----------ccccccc
Q 037529 66 KELVMGTECAVCLDEVESEQPARLVP--GCNHGFHLQCADSWLSKHS----------VCPVCRA 117 (133)
Q Consensus 66 ~~~~~~~~C~ICl~~~~~~~~~~~lp--~C~H~fh~~Ci~~wl~~~~----------~CP~Cr~ 117 (133)
++...+..|.||-+. ..+..-. .|...|+.+||+..+.... .|=+|.-
T Consensus 74 DeDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp CTTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 344456779998864 2233322 3788999999999975421 5777764
No 160
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.03 E-value=2.9 Score=23.16 Aligned_cols=43 Identities=23% Similarity=0.483 Sum_probs=29.3
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~ 124 (133)
..|+-|-..+..++.+.. . =+..||.+| ..|-.|+++|....+
T Consensus 16 ~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~~~f 58 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF-Y-EDRHFHEGC--------FRCCRCQRSLADEPF 58 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC-C-SSCCCBTTT--------SBCTTTCCBCSSCCE
T ss_pred CcCccCCCccccCcEEEE-e-CCccccccC--------CeecCCCCccCCCcc
Confidence 479999998874333322 1 578899766 568888888865433
No 161
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=68.42 E-value=0.61 Score=25.76 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=30.1
Q ss_pred cccccccccccccCC-CccccCCCCccccHHHHHHHH----hCCCcccccccc
Q 037529 71 GTECAVCLDEVESEQ-PARLVPGCNHGFHLQCADSWL----SKHSVCPVCRAK 118 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~-~~~~lp~C~H~fh~~Ci~~wl----~~~~~CP~Cr~~ 118 (133)
...| ||-..+.++. .+.--. |..=||..|+.--- ..+..||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~-C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDG-CGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSS-SCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCC-CCCccCCeeeccCccccCCCcEECCCccCC
Confidence 4568 7988766554 444343 87779999976431 123479999864
No 162
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=68.39 E-value=14 Score=20.96 Aligned_cols=39 Identities=15% Similarity=0.335 Sum_probs=28.2
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHhC
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK 108 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~ 108 (133)
....|.+|.+.+++.--+..-..=+|.||--|-...++.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 346799999999876544321123699999999998864
No 163
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=67.33 E-value=3.2 Score=30.47 Aligned_cols=48 Identities=19% Similarity=0.449 Sum_probs=30.7
Q ss_pred ccccccccccccCCCccccCCCCcc--ccHHHHHHHHhC--CCcccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHG--FHLQCADSWLSK--HSVCPVCRAKLDSH 122 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~--fh~~Ci~~wl~~--~~~CP~Cr~~v~~~ 122 (133)
..||+=...++. .++-.. |.|. |-.+=+...-.+ .-.||+|.+.+...
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred ecCCCccccccc--cCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 458877777654 344555 9998 665544444333 33799999877543
No 164
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.16 E-value=3.5 Score=22.70 Aligned_cols=38 Identities=18% Similarity=0.431 Sum_probs=25.8
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS 121 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 121 (133)
..|+-|-+.+. +..+ .. -+..||.+| ..|-.|++.|..
T Consensus 16 ~~C~~C~~~I~-~~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFM--VA-GEFKYHPEC--------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCCB--CC-TTCCBCTTS--------CBCTTTCCBCCT
T ss_pred CcCccCCCCcC-ceEE--EE-CCceecccc--------CCccCCCCccCC
Confidence 46888888877 2322 22 677888666 568888888854
No 165
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=66.53 E-value=2.5 Score=27.06 Aligned_cols=47 Identities=19% Similarity=0.419 Sum_probs=31.0
Q ss_pred Ccccccccccccc--cCCCccccCCCCccccHHHHHHHHhCCC--cccccccc
Q 037529 70 MGTECAVCLDEVE--SEQPARLVPGCNHGFHLQCADSWLSKHS--VCPVCRAK 118 (133)
Q Consensus 70 ~~~~C~ICl~~~~--~~~~~~~lp~C~H~fh~~Ci~~wl~~~~--~CP~Cr~~ 118 (133)
++..|++|...|. .+....... |+|.+|..|-. |..... .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~-C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLE-CSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTT-TCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCC-CCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 5789999999864 333444454 99999999962 332222 47777653
No 166
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=66.30 E-value=1.8 Score=26.99 Aligned_cols=49 Identities=12% Similarity=0.369 Sum_probs=30.1
Q ss_pred CCcccccccccccc--cCCCccccCCCCccccHHHHHHHHhC-CC---cccccccc
Q 037529 69 VMGTECAVCLDEVE--SEQPARLVPGCNHGFHLQCADSWLSK-HS---VCPVCRAK 118 (133)
Q Consensus 69 ~~~~~C~ICl~~~~--~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~---~CP~Cr~~ 118 (133)
.++..|.+|...|. .+....... |.|.+|..|-..--.. +. .|-+|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~-C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCED-CKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTT-TCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCC-CCcccccccCCccCCCCCccceechhhHHH
Confidence 35688999999984 222333443 9999998885431111 11 47777763
No 167
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=65.79 E-value=0.81 Score=24.36 Aligned_cols=42 Identities=26% Similarity=0.603 Sum_probs=25.1
Q ss_pred cccccccccccccCCCccccCC--CC-ccccHHHHHHHHhC----CCccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPG--CN-HGFHLQCADSWLSK----HSVCPVCRA 117 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 117 (133)
..-| ||..... +..+ .-.+ |. .-||..|+. +.. +-.||.|++
T Consensus 10 ~~~C-~C~~~~~-g~mi-~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEE-EeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4556 8987632 3322 2223 43 579999998 333 236999975
No 168
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=65.72 E-value=3.5 Score=30.09 Aligned_cols=48 Identities=27% Similarity=0.439 Sum_probs=31.1
Q ss_pred ccccccccccccCCCccccCCCCcc--ccHHHHHHHHhC--CCcccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHG--FHLQCADSWLSK--HSVCPVCRAKLDSH 122 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~--fh~~Ci~~wl~~--~~~CP~Cr~~v~~~ 122 (133)
..||+=...++. .++-.. |.|. |-.+=+.....+ .-.||+|.+.+...
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 458877777654 344454 9998 775555444333 33799999987543
No 169
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.58 E-value=4.4 Score=22.25 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=28.6
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH 122 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 122 (133)
...|+-|-+.+.. .. +.. -+..||.+| ..|-.|++.|...
T Consensus 15 ~~~C~~C~~~I~~-~~--~~a-~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VF--VKL-RDRHRHPEC--------YVCTDCGTNLKQK 54 (79)
T ss_dssp CCCCSSSCCCCCS-SC--EEC-SSCEECTTT--------TSCSSSCCCHHHH
T ss_pred CCccccCCCCccC-cE--EEE-CcceeCcCc--------CeeCCCCCCCCCC
Confidence 4679999998875 22 232 678899777 4688888887643
No 170
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.44 E-value=3.5 Score=23.35 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=29.6
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~ 124 (133)
...|+-|-+.+. ++.+ .. -|..||.+| ..|-.|++.|....+
T Consensus 25 ~~~C~~C~~~I~-~~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~~~f 66 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFL--VA-LGKSWHPEE--------FNCAHCKNTMAYIGF 66 (90)
T ss_dssp CCBBSSSCCBCC-SCEE--EE-TTEEECTTT--------CBCSSSCCBCSSSCB
T ss_pred CCCCccCCCEec-ceEE--EE-CCccccccC--------CccCCCCCCCCCCEe
Confidence 467999999885 3322 22 678899776 568889988875543
No 171
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.19 E-value=3.8 Score=21.87 Aligned_cols=40 Identities=20% Similarity=0.459 Sum_probs=25.6
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
..|+-|-+.+.. ..+ .. -+..||.+| ..|-.|++.|....
T Consensus 6 ~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~~~ 45 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVI--KA-MNNSWHPEC--------FRCDLCQEVLADIG 45 (70)
T ss_dssp SBCSSSCCBCCS-CCE--EE-TTEEECTTT--------SBCSSSCCBCSSSC
T ss_pred CcCccCCCEecc-eEE--EE-CcccccccC--------CEeCCCCCcCCCCc
Confidence 568888887763 222 22 567788666 46777877776553
No 172
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=64.10 E-value=0.96 Score=24.02 Aligned_cols=42 Identities=29% Similarity=0.617 Sum_probs=25.8
Q ss_pred cccccccccccccCCCccccCC--CC-ccccHHHHHHHHhC----CCccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPG--CN-HGFHLQCADSWLSK----HSVCPVCRA 117 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 117 (133)
..-| ||-... .++.+ .-.+ |. .-||..|+. +.. +-.||.|++
T Consensus 9 ~~yC-~C~~~~-~g~mi-~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMI-GCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCee-EeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4556 898764 24333 3223 54 589999988 332 236999975
No 173
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=63.58 E-value=3.1 Score=22.64 Aligned_cols=43 Identities=21% Similarity=0.466 Sum_probs=29.9
Q ss_pred cccccccccccc---CCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529 72 TECAVCLDEVES---EQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 72 ~~C~ICl~~~~~---~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~ 124 (133)
..|+-|-+.+.. ++.... . -+..||.+| ..|-.|+++|....+
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~~~f 61 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVA-Y-EGQSWHDYC--------FHCKKCSVNLANKRF 61 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEE-E-TTEEEETTT--------CBCSSSCCBCTTSCC
T ss_pred ccCcccCCcccCCCCCceeEE-E-CcceeCccc--------CEehhcCCCCCCCcc
Confidence 579999998875 233322 2 678899776 568999998875533
No 174
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.95 E-value=3.8 Score=21.79 Aligned_cols=40 Identities=25% Similarity=0.542 Sum_probs=25.3
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
..|+-|-+.+.. +.+ .. -+..||.+| ..|-.|++.|....
T Consensus 6 ~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~~~ 45 (69)
T 2cur_A 6 SGCVKCNKAITS-GGI--TY-QDQPWHADC--------FVCVTCSKKLAGQR 45 (69)
T ss_dssp CCCSSSCCCCCT-TCE--EE-TTEEECTTT--------TBCTTTCCBCTTSC
T ss_pred CCCcccCCEeCc-ceE--EE-CccccccCc--------CEECCCCCCCCCCc
Confidence 568888877753 222 22 567788666 45778887776433
No 175
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=62.50 E-value=7.8 Score=28.59 Aligned_cols=48 Identities=21% Similarity=0.528 Sum_probs=31.0
Q ss_pred CCCCcccccccccccccCCCccccC--CCCccccHHHHHHHHhCC----------Ccccccccc
Q 037529 67 ELVMGTECAVCLDEVESEQPARLVP--GCNHGFHLQCADSWLSKH----------SVCPVCRAK 118 (133)
Q Consensus 67 ~~~~~~~C~ICl~~~~~~~~~~~lp--~C~H~fh~~Ci~~wl~~~----------~~CP~Cr~~ 118 (133)
+...+..|.+|-+. ++ +..-. .|...||.+||...+... =.|=+|.-.
T Consensus 89 ~DG~~~yCr~C~~G---g~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 89 DDGYQSYCSICCSG---ET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSSBCSCTTTCCC---SS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCCcccceEcCCC---Ce-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 33446678888864 22 33222 388999999999997432 258777643
No 176
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=62.48 E-value=3.6 Score=22.74 Aligned_cols=52 Identities=17% Similarity=0.255 Sum_probs=32.1
Q ss_pred ccccccccccccC-CCccccCCCCccccHHHHHHHHh-----CCCcccccccccccccc
Q 037529 72 TECAVCLDEVESE-QPARLVPGCNHGFHLQCADSWLS-----KHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 72 ~~C~ICl~~~~~~-~~~~~lp~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~v~~~~~ 124 (133)
..-.||-..+..+ ..+.--. |.-=||..|+.---. ..-.||.|+..-.....
T Consensus 10 ~~yCiC~~~~~~~~~MI~Cd~-C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~~~~ 67 (75)
T 3kqi_A 10 PVYCVCRLPYDVTRFMIECDA-CKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKSTL 67 (75)
T ss_dssp CEETTTTEECCTTSCEEECTT-TCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCCCCB
T ss_pred eeEEECCCcCCCCCCEEEcCC-CCCCEecccccccccccCCCCEEECCCCcccCCCCeE
Confidence 3344898876533 3444343 887799999864321 23479999876544433
No 177
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=61.28 E-value=9.3 Score=23.12 Aligned_cols=39 Identities=23% Similarity=0.480 Sum_probs=29.4
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 120 (133)
...|+-|-..+.....+.. -|..||.+| ..|-.|++.|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 3679999998875432332 678899777 67999999986
No 178
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=61.18 E-value=3 Score=22.06 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=29.3
Q ss_pred ccccccccccccCCCccccCCCCcccc--HHHHHHHHhCCCcccccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFH--LQCADSWLSKHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh--~~Ci~~wl~~~~~CP~Cr~~v~~~~~ 124 (133)
..|+-|-+.+..++.... . -|..|| .+| ..|-.|+++|....+
T Consensus 3 ~~C~~C~~~I~~~~~~v~-a-~~~~wH~~~~C--------F~C~~C~~~L~~~~f 47 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVT-Y-NNFSWHASTEC--------FLCSCCSKCLIGQKF 47 (65)
T ss_dssp EECTTTSSEECTTSCEEE-E-TTEEEETTTTT--------SBCTTTCCBCTTSCC
T ss_pred CCCcCCCCeeccCceEEE-E-CCCccCCCCCC--------EECCCCCCcCCCCce
Confidence 458888888876433322 2 678899 877 568888888865443
No 179
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=59.94 E-value=1.3 Score=23.76 Aligned_cols=42 Identities=26% Similarity=0.564 Sum_probs=25.5
Q ss_pred cccccccccccccCCCccccCC--CC-ccccHHHHHHHHhC----CCccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPG--CN-HGFHLQCADSWLSK----HSVCPVCRA 117 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 117 (133)
..-| +|-... .++.+ .-.+ |. .-||..|+.. .. +-.||.|++
T Consensus 11 ~~yC-~C~~~~-~g~MI-~CD~c~C~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMI-GCDNEQCPIEWFHFSCVSL--TYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGTC--SSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCCee-eeeCCCCCcccEecccCCc--CcCCCCCEECcCccc
Confidence 4556 898753 24333 2223 33 6899999873 22 236999975
No 180
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=59.93 E-value=5.2 Score=22.97 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=29.2
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS 121 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 121 (133)
..|..|-..+..+ ... .. =|..|+..|..+ .....|..|.+.|.+
T Consensus 34 F~C~~C~~~L~~~-~~~-~~-~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 34 FRCAKCLHPLANE-TFV-AK-DNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp CCCSSSCCCTTSS-CCE-EE-TTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred CcccccCCCCCcC-eeE-Cc-CCEEEChhHhhh--hcCCccccCCCcccc
Confidence 5677777776432 222 22 567788888754 235689999988874
No 181
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=59.87 E-value=8 Score=21.69 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=29.9
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
....|+-|-+.+.. .. +.. -+..||.+| ..|-.|++.|....
T Consensus 24 ~~~~C~~C~~~I~~-~~--~~a-~~~~~H~~C--------F~C~~C~~~L~~~~ 65 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV--VKA-RDKYRHPEC--------FVCADCNLNLKQKG 65 (89)
T ss_dssp SCCBCTTTCCBCCS-CC--EES-SSCEECTTT--------CCCSSSCCCTTTSC
T ss_pred cCCCcccCCCEecc-cE--EEE-CCceECccC--------CEecCCCCCCCCCC
Confidence 34679999998875 22 222 678899777 56888988886543
No 182
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=58.62 E-value=7.4 Score=23.37 Aligned_cols=50 Identities=4% Similarity=-0.047 Sum_probs=35.4
Q ss_pred cccccccccccc-CCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529 72 TECAVCLDEVES-EQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 72 ~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
..|..|-..+.+ +... ... =|..||..|...-+..+..|-.|.+.|....
T Consensus 33 F~C~~C~~~L~~~~~~~-~~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSS-YTK-SGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HCCSSSCCCTTTSEECC-EEE-TTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCcCCCCCcccccCCeE-EEE-CCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 568888777753 2222 222 6778999999887766668999999887643
No 183
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=58.37 E-value=15 Score=17.98 Aligned_cols=7 Identities=14% Similarity=0.377 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 037529 5 VILALFL 11 (133)
Q Consensus 5 ~~l~~~~ 11 (133)
++++++.
T Consensus 13 Ii~s~l~ 19 (42)
T 2k1a_A 13 VLVGVLG 19 (42)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344433
No 184
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.06 E-value=5.1 Score=22.06 Aligned_cols=39 Identities=28% Similarity=0.623 Sum_probs=26.6
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH 122 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 122 (133)
..|+-|-+.+.. ..+. . -+..||.+| ..|-.|++.|...
T Consensus 16 ~~C~~C~~~I~~-~~v~--a-~~~~wH~~C--------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVS--A-LGKTYHPDC--------FVCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCCS-CCEE--E-TTEEECTTT--------SSCSSSCCCCCSS
T ss_pred CcCccccCEecc-ceEE--E-CCceeCccC--------CccccCCCCCCCC
Confidence 479999998773 3222 2 678899776 4577787777543
No 185
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.02 E-value=5.3 Score=21.84 Aligned_cols=39 Identities=23% Similarity=0.586 Sum_probs=26.3
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH 122 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 122 (133)
..|+-|-+.+..+ . +.. -+..||.+| ..|-.|++.|...
T Consensus 16 ~~C~~C~~~I~~~-~--v~a-~~~~~H~~C--------F~C~~C~~~L~~~ 54 (80)
T 2cuq_A 16 PRCARCSKTLTQG-G--VTY-RDQPWHREC--------LVCTGCQTPLAGQ 54 (80)
T ss_dssp CCCTTTCCCCCSC-C--EES-SSSEECTTT--------CBCSSSCCBCTTC
T ss_pred CcCCCCCCEecCc-E--EEE-CCchhhhhh--------CCcccCCCcCCCC
Confidence 5688888887643 2 222 677888766 4688888887644
No 186
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=57.70 E-value=7.7 Score=23.41 Aligned_cols=47 Identities=9% Similarity=0.242 Sum_probs=23.1
Q ss_pred cccccccccccc-CCCccccCCCCccccHHHHHHHHhCCCcccccccccc
Q 037529 72 TECAVCLDEVES-EQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120 (133)
Q Consensus 72 ~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 120 (133)
..|..|-..+.. +.... .. =|..||..|...-+..+..|..|.+.|.
T Consensus 30 F~C~~C~~~L~~~~~~~~-~~-~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLY-YK-LGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp CBCTTTCCBCSSTTCCEE-EE-TTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred cccCcCCCccccCCCeEE-EE-CCEEeecCchhhhCCCccChhhcCCccC
Confidence 455556555542 12221 11 4555666666554433335666666554
No 187
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=56.98 E-value=0.59 Score=25.55 Aligned_cols=45 Identities=20% Similarity=0.405 Sum_probs=27.0
Q ss_pred ccccccccccccCCCcccc-CCCCccccHHHHHHHH---h-----CCCccccccc
Q 037529 72 TECAVCLDEVESEQPARLV-PGCNHGFHLQCADSWL---S-----KHSVCPVCRA 117 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l-p~C~H~fh~~Ci~~wl---~-----~~~~CP~Cr~ 117 (133)
..| ||-.....+..+.-- +.|..=||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 446 797665555544432 1277679999973210 0 1346999985
No 188
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.96 E-value=4.2 Score=22.05 Aligned_cols=37 Identities=16% Similarity=0.521 Sum_probs=21.6
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 120 (133)
..|+-|-..+.. ..+ . .-+..||.+| ..|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~-~~v--~-a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RVL--E-AGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CCB--C-CSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-eeE--E-eCCCCCCCCc--------CEeCCCCCCCC
Confidence 457777776654 212 2 2567777665 44666666665
No 189
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=56.25 E-value=1 Score=23.08 Aligned_cols=41 Identities=24% Similarity=0.507 Sum_probs=24.9
Q ss_pred ccccccccCCCccccCCCCccccHHHHHHHH---hCCCccccccc
Q 037529 76 VCLDEVESEQPARLVPGCNHGFHLQCADSWL---SKHSVCPVCRA 117 (133)
Q Consensus 76 ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl---~~~~~CP~Cr~ 117 (133)
||-.....+..+.--. |+.=||..|+.--- ..+-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~-C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNE-CHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTT-TCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCC-CCccccccccCCCcccCCCcEECcCCCC
Confidence 6766554334444443 87779999976422 12347999875
No 190
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.98 E-value=7.6 Score=21.16 Aligned_cols=40 Identities=20% Similarity=0.408 Sum_probs=27.4
Q ss_pred ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529 72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
..|+-|-+.+.+ +.+ .. -+..||.+| ..|-.|++.|....
T Consensus 16 ~~C~~C~~~I~~-~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~~~ 55 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYL--SA-MDTVWHPEC--------FVCGDCFTSFSTGS 55 (80)
T ss_dssp CBCTTTCCBCCS-SCE--EE-TTEEECTTT--------CBCSSSCCBSCSSC
T ss_pred CccccCCCeecc-eeE--EE-CCCeEecCc--------CChhhCCCCCCCCc
Confidence 568888888775 323 22 567888666 56888888886643
No 191
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=53.88 E-value=6.2 Score=25.72 Aligned_cols=42 Identities=21% Similarity=0.450 Sum_probs=28.0
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF 123 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 123 (133)
...|+.|-+.+.+++.+.. -+..||.+| ..|-.|++.|....
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~~ 156 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSC--------FRCAKCGKSLESTT 156 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTT--------CBCTTTCCBCCSSS
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhc--------CCccccCCCCCCCc
Confidence 4568888888876555432 567788665 55777777775543
No 192
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=52.37 E-value=0.69 Score=26.16 Aligned_cols=14 Identities=29% Similarity=1.025 Sum_probs=12.4
Q ss_pred CCCccccHHHHHHH
Q 037529 92 GCNHGFHLQCADSW 105 (133)
Q Consensus 92 ~C~H~fh~~Ci~~w 105 (133)
.|||.|+..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 49999999998887
No 193
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=51.62 E-value=3.3 Score=31.50 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=30.6
Q ss_pred ccccccccccccc-CCCccccCCCCccccHHHHHHHHh-----CCCcccccccccc
Q 037529 71 GTECAVCLDEVES-EQPARLVPGCNHGFHLQCADSWLS-----KHSVCPVCRAKLD 120 (133)
Q Consensus 71 ~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~v~ 120 (133)
...| ||-..+.. +..+..-. |.-=||..|+.---. .+-.||.|+..-.
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~-C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDI-CKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTT-TCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred CeEE-eCCCcCCCCCCeEEccC-CCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 3446 99988753 33444443 887899999854211 1247999986543
No 194
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=51.55 E-value=18 Score=16.76 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037529 4 SVILALFLPCAGMSLVFI 21 (133)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~ 21 (133)
++-+.++++.+++.+.++
T Consensus 8 g~Gvl~LLviV~LgV~LI 25 (35)
T 2lk9_A 8 GIGILVLLIIVILGVPLI 25 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcchhe
Confidence 333444444444333333
No 195
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=48.54 E-value=2.6 Score=26.93 Aligned_cols=21 Identities=33% Similarity=0.798 Sum_probs=14.3
Q ss_pred CCccccHHHHHHHHhCCCccccccccc
Q 037529 93 CNHGFHLQCADSWLSKHSVCPVCRAKL 119 (133)
Q Consensus 93 C~H~fh~~Ci~~wl~~~~~CP~Cr~~v 119 (133)
|||.|-.. .....||.|..++
T Consensus 138 Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 138 CGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp SCCEESSC------CGGGBCTTTCCBE
T ss_pred CCCcccCC------CCCCcCCCCCCcc
Confidence 88888632 1234799998775
No 196
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=48.28 E-value=4.8 Score=23.69 Aligned_cols=42 Identities=19% Similarity=0.587 Sum_probs=24.7
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS 121 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 121 (133)
+..||.|..+++-.. ++.+|..|-.. +.....||-|.++|..
T Consensus 32 ~~~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBCEE
T ss_pred cccCccCCCcceecC--------CEEECccccch-hhccccCcchhhHHHH
Confidence 378999998865322 23334444221 1234579999887754
No 197
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=45.84 E-value=3.8 Score=17.79 Aligned_cols=10 Identities=40% Similarity=1.148 Sum_probs=6.2
Q ss_pred cccccccccc
Q 037529 111 VCPVCRAKLD 120 (133)
Q Consensus 111 ~CP~Cr~~v~ 120 (133)
.||+|.+.+.
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 5777765444
No 198
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=45.59 E-value=21 Score=17.92 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=10.4
Q ss_pred CCccccccccccccc
Q 037529 109 HSVCPVCRAKLDSHF 123 (133)
Q Consensus 109 ~~~CP~Cr~~v~~~~ 123 (133)
.-.||.|--.+....
T Consensus 23 ~IrCpyCGyrii~Kv 37 (48)
T 4ayb_P 23 GVRCPYCGYKIIFMV 37 (48)
T ss_dssp SSCCTTTCCSCEECC
T ss_pred CcccCccCcEEEEEe
Confidence 457999987765443
No 199
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=45.22 E-value=13 Score=21.98 Aligned_cols=37 Identities=5% Similarity=-0.058 Sum_probs=19.4
Q ss_pred ccccccccccccc-CCCccccCCCCccccHHHHHHHHhCC
Q 037529 71 GTECAVCLDEVES-EQPARLVPGCNHGFHLQCADSWLSKH 109 (133)
Q Consensus 71 ~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~~~ 109 (133)
-..|..|-..+.+ +.... .. =|..||..|...-+..+
T Consensus 30 CF~C~~C~~~L~~~g~~~~-~~-~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 30 CLSCDLCGCRLGEVGRRLY-YK-LGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp TCCCSSSCSCCCCSSSCCC-CB-TTBCCCHHHHHHHHTSC
T ss_pred cCcccccCCchhcCCCeeE-EE-CCeeechHHHHHHhCcc
Confidence 3566666666653 22221 22 45667777766654443
No 200
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=44.29 E-value=12 Score=23.23 Aligned_cols=31 Identities=23% Similarity=0.465 Sum_probs=19.3
Q ss_pred CCCCcccccccccccccCC-CccccCCCCccc
Q 037529 67 ELVMGTECAVCLDEVESEQ-PARLVPGCNHGF 97 (133)
Q Consensus 67 ~~~~~~~C~ICl~~~~~~~-~~~~lp~C~H~f 97 (133)
.+++-..||-|-.+|.-.+ ...+-|.|+|-+
T Consensus 23 ~M~~lP~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 23 MVSTLPPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CCCCSCCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred ccccCCCCCCCCCcceEecCCeEECCcccccc
Confidence 3344577999999986333 334445577765
No 201
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=44.05 E-value=5.2 Score=23.70 Aligned_cols=13 Identities=38% Similarity=0.958 Sum_probs=9.7
Q ss_pred CCccccccccccc
Q 037529 109 HSVCPVCRAKLDS 121 (133)
Q Consensus 109 ~~~CP~Cr~~v~~ 121 (133)
+..||+|.+.+++
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4568888887765
No 202
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=42.97 E-value=21 Score=21.23 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=17.6
Q ss_pred cccccccccccccCCCccccCCCCcccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFH 98 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh 98 (133)
...|..|... +..-.-|. |||++|
T Consensus 24 ~~~C~~C~~~---~~~W~CL~-CG~vgC 47 (109)
T 3c5k_A 24 TQPCGDCGTI---QENWVCLS-CYQVYC 47 (109)
T ss_dssp TCCCTTTCCC---SSEEEETT-TCCEEE
T ss_pred CCcCccccCC---CCeeeeee-cCcccc
Confidence 4569999875 33355787 999997
No 203
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=40.93 E-value=9.1 Score=19.95 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=9.3
Q ss_pred ccccccccccccc
Q 037529 71 GTECAVCLDEVES 83 (133)
Q Consensus 71 ~~~C~ICl~~~~~ 83 (133)
--.||.|...+..
T Consensus 10 iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 10 ILACPACHAPLEE 22 (56)
T ss_dssp SCCCSSSCSCEEE
T ss_pred heeCCCCCCccee
Confidence 3579999887653
No 204
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=40.54 E-value=10 Score=21.44 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=6.7
Q ss_pred cccccccccccc
Q 037529 72 TECAVCLDEVES 83 (133)
Q Consensus 72 ~~C~ICl~~~~~ 83 (133)
..||.|-.++..
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 346666665543
No 205
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=40.23 E-value=4.5 Score=28.89 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=30.4
Q ss_pred CcccccccccccccCCCccc--cCCCC--ccccHHHHHHHHhCCCcccccccc
Q 037529 70 MGTECAVCLDEVESEQPARL--VPGCN--HGFHLQCADSWLSKHSVCPVCRAK 118 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~--lp~C~--H~fh~~Ci~~wl~~~~~CP~Cr~~ 118 (133)
....||+|-..-..+ .++. .. =| |.+|.-|-..|--....||.|-.+
T Consensus 181 ~~~~CPvCGs~P~~s-~l~~~g~~-~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG-MIRQGGKE-TGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEE-EEEC-----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCcee-EEeecCCC-CCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 457899999875432 1111 01 23 456777777776677899999886
No 206
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=38.97 E-value=12 Score=22.42 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=12.9
Q ss_pred CCccccHHHHHHHHhCCCcccccccccc
Q 037529 93 CNHGFHLQCADSWLSKHSVCPVCRAKLD 120 (133)
Q Consensus 93 C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 120 (133)
=|..||..|..+- ....|+.|.+.|.
T Consensus 49 ~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 49 NDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp TTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CCEEechHHhCcC--cCccCcccCCcCC
Confidence 3445555555442 3344555555554
No 207
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=38.91 E-value=15 Score=23.74 Aligned_cols=27 Identities=7% Similarity=0.146 Sum_probs=12.4
Q ss_pred CccccHHHHHHHHhCCCcccccccccc
Q 037529 94 NHGFHLQCADSWLSKHSVCPVCRAKLD 120 (133)
Q Consensus 94 ~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 120 (133)
|..||..|...-+..+..|+.|.+.|.
T Consensus 54 g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 54 GMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp TEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred CccccccccccccccCCccccCCCccc
Confidence 444555555443332224555555443
No 208
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=38.52 E-value=0.97 Score=19.13 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=7.6
Q ss_pred cccHHHHHHHH
Q 037529 96 GFHLQCADSWL 106 (133)
Q Consensus 96 ~fh~~Ci~~wl 106 (133)
.||+.|-.+|+
T Consensus 6 ffcetcskpwl 16 (26)
T 1loi_A 6 FFCETCSKPWL 16 (26)
T ss_dssp HHHHTSSCTTG
T ss_pred HHHHhcCCchh
Confidence 47777777775
No 209
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=38.39 E-value=7.6 Score=26.74 Aligned_cols=15 Identities=33% Similarity=1.097 Sum_probs=11.5
Q ss_pred HHHHhCCCccccccc
Q 037529 103 DSWLSKHSVCPVCRA 117 (133)
Q Consensus 103 ~~wl~~~~~CP~Cr~ 117 (133)
+.|+..+..||.|-.
T Consensus 28 E~Wv~~n~yCPnCG~ 42 (257)
T 4esj_A 28 EDWVYRQSYCPNCGN 42 (257)
T ss_dssp HHHHHHHCCCTTTCC
T ss_pred HHHHHHCCcCCCCCC
Confidence 677777777888876
No 210
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=37.78 E-value=11 Score=24.36 Aligned_cols=45 Identities=9% Similarity=0.123 Sum_probs=25.2
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS 121 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 121 (133)
-..|..|-..+.... . .. =|..||..|..+- ....|..|+..|..
T Consensus 87 CF~C~~C~~~L~~~~-f--~~-~g~~yC~~~y~~~--f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 87 CLKCSDCHVPLAERC-F--SR-GESVYCKDDFFKR--FGTKCAACQLGIPP 131 (182)
T ss_dssp TTSCTTTCCCCSSCC-E--EE-TTEEECHHHHHHT--TSCCCTTTCCCCCS
T ss_pred cCccCCCCCccCCCc-e--eE-CCEeeecCccccc--cccccccCCCccCC
Confidence 456777777665432 1 22 4666777776552 33456666665543
No 211
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=36.32 E-value=36 Score=18.04 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=28.9
Q ss_pred CcccccccccccccCCCccccCCCCccccH-HHHHHH
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHL-QCADSW 105 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~-~Ci~~w 105 (133)
-+..|+-|-..+..++....-...-|.||. .||..+
T Consensus 19 ~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 19 AKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred cccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 357899999999999977776657799985 488775
No 212
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=36.32 E-value=5.8 Score=21.74 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=10.7
Q ss_pred HHhCCCccccccccccc
Q 037529 105 WLSKHSVCPVCRAKLDS 121 (133)
Q Consensus 105 wl~~~~~CP~Cr~~v~~ 121 (133)
|+..--.||.|+.++..
T Consensus 4 ~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 4 KLLDILACPICKGPLKL 20 (69)
T ss_dssp CGGGTCCCTTTCCCCEE
T ss_pred HHHhheeCCCCCCcCeE
Confidence 33444568888877654
No 213
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=36.25 E-value=55 Score=17.92 Aligned_cols=34 Identities=15% Similarity=0.406 Sum_probs=24.5
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHH
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADS 104 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~ 104 (133)
.+..|-.|.+.-.....-..+. |.-.||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~-C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETT-TTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccC-ccchhhhhhhHh
Confidence 4577999986532334445666 999999999987
No 214
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=35.39 E-value=5.5 Score=21.70 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=11.3
Q ss_pred HHHhCCCccccccccccc
Q 037529 104 SWLSKHSVCPVCRAKLDS 121 (133)
Q Consensus 104 ~wl~~~~~CP~Cr~~v~~ 121 (133)
+|+..--.||.|+.++..
T Consensus 5 ~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp GGGTCCCBCTTTCCBCEE
T ss_pred HHHHHHhCCCCCCCcCeE
Confidence 344445578888876654
No 215
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.73 E-value=20 Score=20.03 Aligned_cols=33 Identities=24% Similarity=0.540 Sum_probs=19.4
Q ss_pred CCccccccccccccc-CCCccccCCCCccccHHH
Q 037529 69 VMGTECAVCLDEVES-EQPARLVPGCNHGFHLQC 101 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~C 101 (133)
..+..|+.|.+.+.- .+.-..-+.|.|..+.+|
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 456889999999752 111111123667666655
No 216
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=34.44 E-value=15 Score=23.64 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=12.9
Q ss_pred CCCccccHHHHHHHHhCCCcccccccc
Q 037529 92 GCNHGFHLQCADSWLSKHSVCPVCRAK 118 (133)
Q Consensus 92 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 118 (133)
.|||++-. .....||+|..+
T Consensus 143 ~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 143 ICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp TTCCEEES-------CCCSBCTTTCCB
T ss_pred CCCCeeCC-------CCCCCCCCCCCC
Confidence 38888752 123489999853
No 217
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=32.13 E-value=26 Score=19.91 Aligned_cols=33 Identities=21% Similarity=0.540 Sum_probs=20.7
Q ss_pred ccccccccccccCCCccc-cCCCCccccHHHHHHH
Q 037529 72 TECAVCLDEVESEQPARL-VPGCNHGFHLQCADSW 105 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~-lp~C~H~fh~~Ci~~w 105 (133)
..|.||-+. ..|..+.- .++|.-.||..|...-
T Consensus 18 l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 18 LTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHHH
T ss_pred CCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHHC
Confidence 569999653 12332221 1238889999998764
No 218
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=36.91 E-value=10 Score=18.21 Aligned_cols=21 Identities=19% Similarity=0.534 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 037529 10 FLPCAGMSLVFIVYLSLLWCA 30 (133)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (133)
++..+.+.++.++...+.|..
T Consensus 14 vlal~vi~iisLIiLi~~w~q 34 (39)
T 2l6w_A 14 ILALVVLTIISLIILIMLWQK 34 (39)
Confidence 333333333334444444443
No 219
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=30.58 E-value=76 Score=17.85 Aligned_cols=42 Identities=26% Similarity=0.462 Sum_probs=29.7
Q ss_pred CCcccccccccccccC---CCccccCCCCccccHHHHHHHHhCCCcccc
Q 037529 69 VMGTECAVCLDEVESE---QPARLVPGCNHGFHLQCADSWLSKHSVCPV 114 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~---~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~ 114 (133)
.....|.+|-+..... ...+-.- |+=..|..|.+.. ...|++
T Consensus 36 ~~~s~C~vC~k~c~s~~~L~g~rC~W-Cq~~VH~~C~~~~---~~eC~l 80 (84)
T 1r79_A 36 PVSAKCTVCDKTCGSVLRLQDWRCLW-CKAMVHTSCKESL---LTKCSG 80 (84)
T ss_dssp CTTCBCSSSCCBCCCTTTCCCEEESS-SCCEECHHHHHHC---CSCBCC
T ss_pred CCCCEeCCCCCEeCCccCCCCCCCcc-cChhHHHHHHHhc---cCcCCC
Confidence 3356899998875432 2455666 9999999999885 555764
No 220
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=30.33 E-value=2 Score=24.50 Aligned_cols=27 Identities=22% Similarity=0.725 Sum_probs=17.4
Q ss_pred cCCCCccccHHHHHHHHhC--CCcccccc
Q 037529 90 VPGCNHGFHLQCADSWLSK--HSVCPVCR 116 (133)
Q Consensus 90 lp~C~H~fh~~Ci~~wl~~--~~~CP~Cr 116 (133)
-|.||+.||..|-.+|=+. ..+|..-+
T Consensus 46 C~~C~~~FC~~C~~~w~~~H~~~sC~~~~ 74 (86)
T 2ct7_A 46 CPQCHQTFCVRCKRQWEEQHRGRSCEDFQ 74 (86)
T ss_dssp CTTTCCEECSSSCSBCCTTTTTSCHHHHH
T ss_pred eCCCCCccccccCCchhhcCCCCChHHHH
Confidence 3349999999998887222 23565443
No 221
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=29.69 E-value=52 Score=23.59 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=29.1
Q ss_pred CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccc
Q 037529 70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA 117 (133)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 117 (133)
.-..|+.=+..+-.|.....-|.||=.||.+. .+..||+|.-
T Consensus 261 ~f~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~l 302 (320)
T 3mkr_B 261 PFDICAASYRPIYRGKPVEKCPLSGACYSPEF------KGQICKVTTV 302 (320)
T ss_dssp CCCBBTTTCCBCCTTSCCEECTTTCCEECGGG------TTSBCTTTSS
T ss_pred ccceecCCCccccCCCCCccCCCCCCeechhh------CCCCCCCCcC
Confidence 34567777776555665666666999999654 5678999963
No 222
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=29.27 E-value=13 Score=20.32 Aligned_cols=11 Identities=27% Similarity=0.757 Sum_probs=8.9
Q ss_pred Ccccccccccc
Q 037529 110 SVCPVCRAKLD 120 (133)
Q Consensus 110 ~~CP~Cr~~v~ 120 (133)
..||+|.+.+.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 36999999875
No 223
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=28.41 E-value=16 Score=19.81 Aligned_cols=13 Identities=38% Similarity=0.897 Sum_probs=9.7
Q ss_pred Ccccccccccccc
Q 037529 110 SVCPVCRAKLDSH 122 (133)
Q Consensus 110 ~~CP~Cr~~v~~~ 122 (133)
-.||.|+.++...
T Consensus 9 L~CP~ck~~L~~~ 21 (68)
T 2hf1_A 9 LVCPLCKGPLVFD 21 (68)
T ss_dssp CBCTTTCCBCEEE
T ss_pred eECCCCCCcCeEe
Confidence 3699999877543
No 224
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=28.20 E-value=11 Score=24.78 Aligned_cols=21 Identities=19% Similarity=0.513 Sum_probs=13.0
Q ss_pred CCCccccHHHHHHHHhCCCcccccccc
Q 037529 92 GCNHGFHLQCADSWLSKHSVCPVCRAK 118 (133)
Q Consensus 92 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 118 (133)
.|||++-.+ .....||.|..+
T Consensus 160 ~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 160 NCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp TTCCEEEEE------ECCSBCTTTCCB
T ss_pred CCCCEeeCC------CCCCCCCCCcCC
Confidence 388886521 122389999864
No 225
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=26.39 E-value=17 Score=20.78 Aligned_cols=11 Identities=27% Similarity=0.945 Sum_probs=7.5
Q ss_pred ccccccccccc
Q 037529 71 GTECAVCLDEV 81 (133)
Q Consensus 71 ~~~C~ICl~~~ 81 (133)
...|+||+..|
T Consensus 45 ~i~C~VCr~tF 55 (86)
T 1wvk_A 45 SIQCKVCMQTF 55 (86)
T ss_dssp CEEETTTTEEE
T ss_pred CCCChHhHhhH
Confidence 46777777665
No 226
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=26.23 E-value=18 Score=19.77 Aligned_cols=15 Identities=40% Similarity=0.990 Sum_probs=10.7
Q ss_pred CCCcccccccccccc
Q 037529 108 KHSVCPVCRAKLDSH 122 (133)
Q Consensus 108 ~~~~CP~Cr~~v~~~ 122 (133)
.--.||.|+.++...
T Consensus 7 ~iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 7 DILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCCBCTTTCCBEEEE
T ss_pred hheECCCCCCcCEEe
Confidence 344799999977543
No 227
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=25.57 E-value=14 Score=27.77 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=31.2
Q ss_pred cccccccccccc-CCCccccCCCCccccHHHHHHHH---h--CCCcccccccccccc
Q 037529 72 TECAVCLDEVES-EQPARLVPGCNHGFHLQCADSWL---S--KHSVCPVCRAKLDSH 122 (133)
Q Consensus 72 ~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl---~--~~~~CP~Cr~~v~~~ 122 (133)
....+|-..+.+ +..+..- .|.-=||..|+.--- . .+-.||.|+..-.+.
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD-~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~ 60 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECD-MCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPS 60 (447)
T ss_dssp CEETTTTEECCTTSCEEECT-TTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCC
T ss_pred CeEEeCCCcCCCCCCeEEcC-CCCcccccccCCcCcccccCCCEEECCCCccccCCc
Confidence 345589887653 3344444 388779999984321 1 234799998765443
No 228
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=24.55 E-value=51 Score=23.69 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=28.2
Q ss_pred cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccc
Q 037529 71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA 117 (133)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 117 (133)
-..|+.=+..+-.|.....-|.||=.||.+. .+..||+|.-
T Consensus 271 F~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~l 311 (325)
T 3mv2_A 271 FDICAATYKPIYEDTPSVSDPLTGSKYVITE------KDKIDRIAMI 311 (325)
T ss_dssp EEECTTTCCEEESSSCEEECTTTCCEEEGGG------TTSBCSSSSC
T ss_pred ceeecCCcccccCCCCCccCCCCCCeechhh------CCCCCCCCcC
Confidence 4557766666544665666666998898654 5678999963
No 229
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=24.55 E-value=36 Score=19.45 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=8.9
Q ss_pred ccccccccccccc
Q 037529 111 VCPVCRAKLDSHF 123 (133)
Q Consensus 111 ~CP~Cr~~v~~~~ 123 (133)
.||+|.+.+....
T Consensus 50 ~CpYCg~~y~~~~ 62 (87)
T 2jz8_A 50 ICPYCSTLYRYDP 62 (87)
T ss_dssp CCTTTCCEEECCT
T ss_pred ECCCCCCEeEcCC
Confidence 6888888764433
No 230
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=24.22 E-value=23 Score=23.51 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=13.1
Q ss_pred CCCccccHHHHHHHHhCCCcccccccc
Q 037529 92 GCNHGFHLQCADSWLSKHSVCPVCRAK 118 (133)
Q Consensus 92 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 118 (133)
.|||++-. .....||+|..+
T Consensus 176 ~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 176 ICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp SSCCEEES-------SCCSBCTTTCCB
T ss_pred CCCCEEcC-------cCCCCCCCCCCC
Confidence 38888652 122489999864
No 231
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=23.21 E-value=23 Score=19.67 Aligned_cols=18 Identities=6% Similarity=0.244 Sum_probs=1.6
Q ss_pred hCCCcccccccccccccc
Q 037529 107 SKHSVCPVCRAKLDSHFF 124 (133)
Q Consensus 107 ~~~~~CP~Cr~~v~~~~~ 124 (133)
..+..||+|+..+..-.+
T Consensus 6 ~r~k~C~fc~~~~~~iDY 23 (75)
T 3i1m_R 6 RRRKFCRFTAEGVQEIDY 23 (75)
T ss_dssp --------------CCST
T ss_pred CCCCCCCcccCCCCcCCc
Confidence 456789999887654333
No 232
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=23.13 E-value=71 Score=15.02 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 037529 8 ALFLPCAGMSLVFIVYLSLLWCA 30 (133)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~ 30 (133)
.+++.++.+.+.-++...+..++
T Consensus 8 GIVlGlipvtlaGLfv~Ay~Qyr 30 (37)
T 1q90_G 8 GIVLGLVPVTIAGLFVTAYLQYL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHhhHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333
No 233
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=22.08 E-value=9.8 Score=20.73 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=8.5
Q ss_pred CCccccccccccc
Q 037529 109 HSVCPVCRAKLDS 121 (133)
Q Consensus 109 ~~~CP~Cr~~v~~ 121 (133)
--.||.|+.++..
T Consensus 8 iL~CP~ck~~L~~ 20 (68)
T 2jr6_A 8 ILVCPVTKGRLEY 20 (68)
T ss_dssp CCBCSSSCCBCEE
T ss_pred heECCCCCCcCeE
Confidence 3468888876644
No 234
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=21.93 E-value=51 Score=17.41 Aligned_cols=16 Identities=13% Similarity=0.399 Sum_probs=10.9
Q ss_pred CCCccccccccc-cccc
Q 037529 68 LVMGTECAVCLD-EVES 83 (133)
Q Consensus 68 ~~~~~~C~ICl~-~~~~ 83 (133)
..+...|.||+. .|.+
T Consensus 6 ~~d~~~C~iC~KTKFAD 22 (62)
T 2a20_A 6 KGDAPTCGICHKTKFAD 22 (62)
T ss_dssp SSCCCCCSSSSCSCCCS
T ss_pred cCCcchhhhhccceecc
Confidence 345688999985 3444
No 235
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=20.86 E-value=49 Score=26.98 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=7.9
Q ss_pred ccCCCCccccHHHHHHHHhCCCccccccccc
Q 037529 89 LVPGCNHGFHLQCADSWLSKHSVCPVCRAKL 119 (133)
Q Consensus 89 ~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v 119 (133)
++. ..+.++.+++..| ....||.|+...
T Consensus 173 i~~-~~~~~~~~~~~~w--~~~~~~~c~h~~ 200 (854)
T 3ihp_A 173 LLS-ADSASRKQEVQAW--DGEVRQVSKHAF 200 (854)
T ss_dssp HTC-------------------CCCBCTTTT
T ss_pred HHh-cCCHHHHHHHHhh--cCccCCCCcCcc
Confidence 344 7889999999999 445688888754
No 236
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=20.81 E-value=23 Score=16.98 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=9.1
Q ss_pred Cccccccccccc
Q 037529 110 SVCPVCRAKLDS 121 (133)
Q Consensus 110 ~~CP~Cr~~v~~ 121 (133)
..||.|++.+..
T Consensus 10 ~~C~~C~~~i~~ 21 (39)
T 2i5o_A 10 VPCEKCGSLVPV 21 (39)
T ss_dssp EECTTTCCEEEG
T ss_pred cccccccCcCCc
Confidence 369999887765
No 237
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=20.60 E-value=75 Score=16.75 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=9.5
Q ss_pred CCccccccccccccc
Q 037529 109 HSVCPVCRAKLDSHF 123 (133)
Q Consensus 109 ~~~CP~Cr~~v~~~~ 123 (133)
+..||.|........
T Consensus 18 k~~CP~CG~~T~~~h 32 (60)
T 2apo_B 18 KEICPKCGEKTVIPK 32 (60)
T ss_dssp SSBCSSSCSBCBCCC
T ss_pred cccCcCCCCcCCCCC
Confidence 456888877654433
No 238
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=20.25 E-value=70 Score=16.79 Aligned_cols=18 Identities=22% Similarity=0.569 Sum_probs=12.8
Q ss_pred CCccccHH--HHHHHHhCCC
Q 037529 93 CNHGFHLQ--CADSWLSKHS 110 (133)
Q Consensus 93 C~H~fh~~--Ci~~wl~~~~ 110 (133)
=||.-|.+ ||..||..+.
T Consensus 17 TG~HcH~EA~tIA~~L~~~~ 36 (61)
T 3ph0_C 17 TGHHCHQEAASIADWLAQEE 36 (61)
T ss_dssp HTTTCHHHHHHHHHHHHTSS
T ss_pred ccchHHHHHHHHHHHHHhCC
Confidence 36666654 8999998654
No 239
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.16 E-value=10 Score=20.03 Aligned_cols=35 Identities=23% Similarity=0.599 Sum_probs=21.6
Q ss_pred ccccccccccccCCCccccC--C--CCccccHHHHHHHH
Q 037529 72 TECAVCLDEVESEQPARLVP--G--CNHGFHLQCADSWL 106 (133)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~lp--~--C~H~fh~~Ci~~wl 106 (133)
..||-|...++..+....+. . |+|.|+..|..+|-
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 56888888877655332222 2 56777777766664
No 240
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=20.16 E-value=30 Score=19.41 Aligned_cols=9 Identities=22% Similarity=0.818 Sum_probs=4.4
Q ss_pred ccccccccc
Q 037529 72 TECAVCLDE 80 (133)
Q Consensus 72 ~~C~ICl~~ 80 (133)
..|.+|-..
T Consensus 54 NqCklC~AS 62 (96)
T 2js3_A 54 NQCKLCGAS 62 (96)
T ss_dssp EEETTSSCE
T ss_pred ccCcccCcc
Confidence 355555443
No 241
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=20.05 E-value=95 Score=24.96 Aligned_cols=39 Identities=18% Similarity=0.445 Sum_probs=27.8
Q ss_pred CCcccccccccccccC-------CCccccCCCCccccHHHHHHHHhC
Q 037529 69 VMGTECAVCLDEVESE-------QPARLVPGCNHGFHLQCADSWLSK 108 (133)
Q Consensus 69 ~~~~~C~ICl~~~~~~-------~~~~~lp~C~H~fh~~Ci~~wl~~ 108 (133)
....+||+|.....+. ....-+. ||-.||.+|.+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 11 GCTATCPVCFASASERCAKNGYTSRWYHLS-CGEHFCNECFDHYYRS 56 (776)
T ss_dssp TCCCSSCCBSCCCSTTCCTTSCBSCEEEEE-TTEEEEHHHHHHHHST
T ss_pred CCcccccHHHHHHHHHHHhCCCCcceeEec-cccchhHHHHHHHhcc
Confidence 3457899998775321 2345576 9999999999987655
Done!