Query 037531
Match_columns 106
No_of_seqs 124 out of 1039
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 13:12:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 99.9 7.1E-27 1.5E-31 176.4 10.1 84 1-85 216-299 (300)
2 KOG1252 Cystathionine beta-syn 99.9 4.8E-25 1E-29 167.9 5.3 98 2-99 263-360 (362)
3 PLN02565 cysteine synthase 99.9 7.2E-23 1.6E-27 156.0 11.6 102 1-102 220-321 (322)
4 PLN02556 cysteine synthase/L-3 99.9 2E-22 4.4E-27 156.1 11.3 102 2-103 265-366 (368)
5 PLN02356 phosphateglycerate ki 99.9 1.7E-22 3.6E-27 158.9 9.9 97 2-100 316-412 (423)
6 PRK10717 cysteine synthase A; 99.9 7.1E-21 1.5E-25 144.8 11.1 99 2-102 231-329 (330)
7 KOG1481 Cysteine synthase [Ami 99.8 1.5E-21 3.2E-26 146.7 7.0 97 3-101 281-379 (391)
8 PLN00011 cysteine synthase 99.8 1.7E-20 3.8E-25 142.7 11.7 100 2-101 223-322 (323)
9 TIGR01137 cysta_beta cystathio 99.8 3.2E-20 6.9E-25 145.7 10.6 97 2-100 224-321 (454)
10 TIGR01139 cysK cysteine syntha 99.8 5.5E-19 1.2E-23 132.7 10.3 87 2-89 212-298 (298)
11 TIGR01138 cysM cysteine syntha 99.8 4.8E-19 1E-23 133.1 9.9 84 4-89 207-290 (290)
12 TIGR01136 cysKM cysteine synth 99.8 9E-19 2E-23 131.6 10.5 88 2-89 212-299 (299)
13 PLN03013 cysteine synthase 99.8 4.8E-19 1E-23 139.5 8.4 87 1-87 328-415 (429)
14 PRK11761 cysM cysteine synthas 99.8 1.1E-18 2.5E-23 131.4 9.8 83 6-90 213-295 (296)
15 cd01561 CBS_like CBS_like: Thi 99.7 5.9E-17 1.3E-21 121.2 10.3 83 2-85 209-291 (291)
16 PLN02618 tryptophan synthase, 99.6 3.2E-15 7E-20 117.5 7.2 72 14-86 330-401 (410)
17 cd06446 Trp-synth_B Tryptophan 99.6 4.8E-15 1E-19 114.6 8.0 70 16-86 295-364 (365)
18 PRK06721 threonine synthase; R 99.5 4.3E-14 9.3E-19 108.8 7.2 78 19-97 255-333 (352)
19 PRK13802 bifunctional indole-3 99.5 8.2E-14 1.8E-18 115.3 8.4 66 21-86 598-668 (695)
20 PRK06608 threonine dehydratase 99.5 4.6E-14 9.9E-19 108.3 6.4 75 19-94 249-325 (338)
21 TIGR00263 trpB tryptophan synt 99.5 1.1E-13 2.5E-18 107.7 7.8 68 18-86 313-380 (385)
22 PRK13028 tryptophan synthase s 99.5 1.3E-13 2.8E-18 108.2 7.5 67 19-86 326-392 (402)
23 PRK07334 threonine dehydratase 99.5 5.8E-14 1.3E-18 109.7 5.4 83 2-86 227-314 (403)
24 TIGR01415 trpB_rel pyridoxal-p 99.4 6.2E-13 1.3E-17 104.8 9.3 91 3-93 309-416 (419)
25 PRK12391 tryptophan synthase s 99.4 5E-13 1.1E-17 105.6 8.8 91 3-93 318-425 (427)
26 PRK04346 tryptophan synthase s 99.4 2E-13 4.4E-18 107.0 6.5 69 17-86 320-388 (397)
27 PRK06352 threonine synthase; V 99.4 3.3E-13 7.2E-18 103.9 6.1 64 24-87 260-324 (351)
28 PRK07409 threonine synthase; V 99.4 1E-12 2.2E-17 101.1 7.8 66 21-86 261-327 (353)
29 PRK06815 hypothetical protein; 99.4 8E-13 1.7E-17 100.4 7.0 78 3-82 227-308 (317)
30 PLN02569 threonine synthase 99.4 1.8E-12 3.9E-17 103.8 7.5 81 4-86 357-444 (484)
31 PRK08197 threonine synthase; V 99.4 2.3E-12 4.9E-17 100.5 7.8 67 20-86 319-386 (394)
32 PRK13803 bifunctional phosphor 99.3 2.2E-12 4.7E-17 105.7 7.1 67 19-86 534-600 (610)
33 cd01563 Thr-synth_1 Threonine 99.3 3.3E-12 7.1E-17 96.8 7.5 64 19-82 259-323 (324)
34 cd06448 L-Ser-dehyd Serine deh 99.3 4E-12 8.7E-17 96.7 6.8 82 4-85 217-307 (316)
35 PRK08329 threonine synthase; V 99.3 1.4E-11 3E-16 94.8 7.8 81 3-84 261-347 (347)
36 TIGR00260 thrC threonine synth 99.3 1.9E-11 4.2E-16 92.7 8.2 66 19-84 261-327 (328)
37 TIGR02079 THD1 threonine dehyd 99.3 1.8E-11 4E-16 96.1 7.4 80 4-86 228-310 (409)
38 PRK08638 threonine dehydratase 99.2 2E-11 4.3E-16 93.6 7.2 80 11-93 241-324 (333)
39 PRK06110 hypothetical protein; 99.2 2.9E-11 6.3E-16 92.0 7.4 71 18-93 246-316 (322)
40 PRK07048 serine/threonine dehy 99.2 1E-11 2.2E-16 94.3 4.8 66 18-86 249-314 (321)
41 cd01562 Thr-dehyd Threonine de 99.2 2.5E-11 5.4E-16 90.9 6.8 64 16-81 240-303 (304)
42 PRK08246 threonine dehydratase 99.2 2.2E-11 4.7E-16 92.4 6.3 65 16-81 240-304 (310)
43 PRK06260 threonine synthase; V 99.2 5.2E-11 1.1E-15 93.0 8.1 66 21-86 307-373 (397)
44 PLN02970 serine racemase 99.2 2.1E-11 4.6E-16 93.1 5.6 70 16-86 249-321 (328)
45 PRK07591 threonine synthase; V 99.2 7.5E-11 1.6E-15 92.9 7.8 67 20-86 329-396 (421)
46 PF00291 PALP: Pyridoxal-phosp 99.2 5.2E-11 1.1E-15 88.5 5.8 76 3-78 223-306 (306)
47 PRK08206 diaminopropionate amm 99.1 7.7E-11 1.7E-15 92.3 6.3 71 15-86 304-388 (399)
48 PRK06382 threonine dehydratase 99.1 6.9E-11 1.5E-15 92.6 5.9 83 4-89 233-321 (406)
49 PRK08813 threonine dehydratase 99.1 1.1E-10 2.5E-15 90.2 6.6 72 4-81 236-310 (349)
50 PRK08639 threonine dehydratase 99.1 1.7E-10 3.6E-15 90.8 7.0 80 4-86 239-321 (420)
51 TIGR03844 cysteate_syn cysteat 99.1 1.9E-10 4.2E-15 90.2 7.1 68 19-86 317-385 (398)
52 TIGR02991 ectoine_eutB ectoine 99.1 7.3E-11 1.6E-15 89.8 4.5 69 10-81 238-306 (317)
53 PRK08198 threonine dehydratase 99.1 1.5E-10 3.2E-15 90.4 6.1 68 16-86 245-312 (404)
54 cd00640 Trp-synth-beta_II Tryp 99.1 5.1E-10 1.1E-14 81.5 7.9 56 23-79 189-244 (244)
55 TIGR01127 ilvA_1Cterm threonin 99.1 1.9E-10 4.2E-15 89.0 4.9 67 16-85 223-289 (380)
56 TIGR01124 ilvA_2Cterm threonin 99.0 6.4E-10 1.4E-14 89.5 7.4 66 17-82 242-307 (499)
57 cd06449 ACCD Aminocyclopropane 99.0 5.4E-10 1.2E-14 84.3 6.4 70 10-79 236-307 (307)
58 PRK02991 D-serine dehydratase; 99.0 6.8E-10 1.5E-14 88.2 7.2 74 18-93 351-434 (441)
59 PRK07476 eutB threonine dehydr 99.0 4.5E-10 9.8E-15 85.5 5.8 69 11-81 239-307 (322)
60 PRK09224 threonine dehydratase 99.0 8.5E-10 1.8E-14 88.8 7.4 65 18-82 246-310 (504)
61 PRK06381 threonine synthase; V 99.0 1.5E-09 3.4E-14 82.2 7.3 59 20-79 259-317 (319)
62 PRK14045 1-aminocyclopropane-1 99.0 6.5E-10 1.4E-14 84.9 5.1 74 3-79 239-314 (329)
63 PRK06450 threonine synthase; V 99.0 1.4E-09 3.1E-14 83.6 7.0 56 22-84 283-338 (338)
64 PRK08526 threonine dehydratase 99.0 1.1E-09 2.3E-14 86.1 6.1 72 13-86 238-311 (403)
65 PRK12483 threonine dehydratase 99.0 1.7E-09 3.6E-14 87.5 6.6 66 16-81 261-326 (521)
66 TIGR01275 ACC_deam_rel pyridox 98.9 2E-09 4.3E-14 81.3 6.1 62 18-79 238-300 (311)
67 PRK05638 threonine synthase; V 98.9 4.6E-09 1E-13 83.1 8.4 62 22-84 297-359 (442)
68 TIGR02035 D_Ser_am_lyase D-ser 98.9 5.2E-09 1.1E-13 83.0 7.8 61 4-64 329-392 (431)
69 PRK03910 D-cysteine desulfhydr 98.9 3.4E-09 7.4E-14 80.9 6.5 64 16-79 253-318 (331)
70 cd06447 D-Ser-dehyd D-Serine d 98.9 1.2E-09 2.6E-14 86.0 4.0 48 18-65 328-375 (404)
71 PLN02550 threonine dehydratase 98.9 7.2E-09 1.6E-13 84.9 7.7 65 18-82 335-399 (591)
72 PRK12390 1-aminocyclopropane-1 98.8 7.6E-09 1.7E-13 79.1 6.3 64 16-79 259-324 (337)
73 COG0498 ThrC Threonine synthas 98.8 2.4E-08 5.2E-13 78.8 7.6 65 22-86 314-378 (411)
74 COG0133 TrpB Tryptophan syntha 98.8 1.8E-08 3.8E-13 77.5 6.0 65 21-86 321-385 (396)
75 COG1171 IlvA Threonine dehydra 98.7 3.9E-08 8.4E-13 76.1 5.5 71 10-81 245-315 (347)
76 TIGR01274 ACC_deam 1-aminocycl 98.7 6.2E-08 1.4E-12 74.2 6.4 68 14-82 256-325 (337)
77 TIGR03528 2_3_DAP_am_ly diamin 98.6 8.3E-08 1.8E-12 75.3 6.0 62 18-79 307-382 (396)
78 KOG1395 Tryptophan synthase be 98.5 2.6E-07 5.6E-12 72.0 6.2 66 20-86 388-453 (477)
79 TIGR01747 diampropi_NH3ly diam 98.4 9.9E-07 2.2E-11 68.9 7.2 64 16-79 286-363 (376)
80 PRK09225 threonine synthase; V 98.1 8.3E-06 1.8E-10 65.4 7.0 60 23-86 358-417 (462)
81 KOG1251 Serine racemase [Signa 98.1 4.4E-06 9.6E-11 62.7 5.0 68 12-81 244-311 (323)
82 cd01560 Thr-synth_2 Threonine 98.1 9.8E-06 2.1E-10 65.0 7.1 61 23-86 361-421 (460)
83 KOG1250 Threonine/serine dehyd 98.1 7.6E-06 1.7E-10 64.6 6.0 67 16-83 290-356 (457)
84 COG1350 Predicted alternative 97.7 0.00021 4.6E-09 55.6 7.7 73 19-93 352-426 (432)
85 COG3048 DsdA D-serine dehydrat 94.6 0.012 2.6E-07 45.8 0.6 57 6-62 339-398 (443)
86 KOG2616 Pyridoxalphosphate-dep 84.9 3.5 7.5E-05 30.8 5.7 57 25-82 149-205 (266)
87 PRK05253 sulfate adenylyltrans 82.5 7.1 0.00015 29.9 6.8 73 29-101 13-87 (301)
88 TIGR02039 CysD sulfate adenyly 81.5 8.4 0.00018 29.5 6.9 73 29-101 5-79 (294)
89 PRK13794 hypothetical protein; 75.5 15 0.00032 29.9 6.9 71 29-101 232-304 (479)
90 TIGR02113 coaC_strep phosphopa 68.5 6.1 0.00013 27.8 2.9 42 45-86 3-44 (177)
91 PF04229 GrpB: GrpB protein; 66.5 1.7 3.6E-05 30.3 -0.3 45 3-47 34-78 (167)
92 TIGR00421 ubiX_pad polyprenyl 66.3 6.4 0.00014 27.8 2.7 41 45-85 2-42 (181)
93 PF03959 FSH1: Serine hydrolas 64.4 37 0.00079 24.0 6.4 54 29-82 86-147 (212)
94 COG2320 GrpB Uncharacterized c 63.9 8 0.00017 27.8 2.8 91 3-97 48-143 (185)
95 cd01455 vWA_F11C1-5a_type Von 63.3 12 0.00027 26.9 3.7 51 31-84 75-127 (191)
96 PRK12563 sulfate adenylyltrans 61.6 56 0.0012 25.3 7.2 73 29-101 23-97 (312)
97 PRK03333 coaE dephospho-CoA ki 61.2 12 0.00025 29.6 3.5 46 3-48 242-287 (395)
98 PRK02090 phosphoadenosine phos 60.9 27 0.00059 25.4 5.3 66 31-99 27-94 (241)
99 PRK00919 GMP synthase subunit 60.9 23 0.00049 27.3 5.0 51 30-82 9-59 (307)
100 cd01713 PAPS_reductase This do 60.5 24 0.00051 23.1 4.5 56 45-100 2-57 (173)
101 PRK07313 phosphopantothenoylcy 60.4 11 0.00023 26.7 2.9 43 44-86 3-45 (182)
102 cd01477 vWA_F09G8-8_type VWA F 59.4 60 0.0013 22.9 7.7 37 48-84 106-146 (193)
103 PRK13795 hypothetical protein; 56.9 40 0.00086 28.4 6.1 69 30-101 229-299 (636)
104 PRK08557 hypothetical protein; 54.9 42 0.00091 27.0 5.7 70 29-101 163-237 (417)
105 PF09967 DUF2201: VWA-like dom 51.6 12 0.00026 24.7 1.9 36 45-81 59-94 (126)
106 PF03283 PAE: Pectinacetyleste 50.6 39 0.00084 26.5 4.8 52 29-82 137-196 (361)
107 TIGR02852 spore_dpaB dipicolin 50.2 22 0.00048 25.4 3.2 38 45-82 3-41 (187)
108 PRK06029 3-octaprenyl-4-hydrox 49.8 13 0.00028 26.5 1.9 43 44-86 3-46 (185)
109 PRK08305 spoVFB dipicolinate s 49.4 23 0.00049 25.6 3.2 43 43-85 6-49 (196)
110 TIGR00884 guaA_Cterm GMP synth 48.9 42 0.00091 25.7 4.7 52 30-83 4-55 (311)
111 PF00175 NAD_binding_1: Oxidor 48.8 60 0.0013 19.7 5.0 47 45-95 1-47 (109)
112 PF05116 S6PP: Sucrose-6F-phos 48.4 9.2 0.0002 28.0 1.0 62 19-82 7-71 (247)
113 cd06359 PBP1_Nba_like Type I p 47.8 56 0.0012 24.2 5.2 37 28-64 49-87 (333)
114 PRK05920 aromatic acid decarbo 47.4 23 0.0005 25.6 2.9 41 44-84 5-45 (204)
115 PF07859 Abhydrolase_3: alpha/ 46.9 60 0.0013 22.1 5.0 49 29-77 49-108 (211)
116 PRK06850 hypothetical protein; 46.7 1.5E+02 0.0032 24.6 7.7 61 29-89 19-87 (507)
117 PF13768 VWA_3: von Willebrand 45.3 58 0.0013 21.3 4.6 47 31-81 59-108 (155)
118 cd06344 PBP1_ABC_ligand_bindin 45.3 47 0.001 24.6 4.5 37 28-64 50-88 (332)
119 PF05728 UPF0227: Uncharacteri 43.8 1.1E+02 0.0024 21.6 5.9 46 27-77 40-89 (187)
120 COG0519 GuaA GMP synthase, PP- 43.6 40 0.00087 26.1 3.8 54 30-85 9-62 (315)
121 PF00448 SRP54: SRP54-type pro 42.4 19 0.00041 25.6 1.9 35 45-79 5-39 (196)
122 PF02441 Flavoprotein: Flavopr 42.1 4.3 9.4E-05 26.7 -1.4 42 45-86 3-44 (129)
123 TIGR00434 cysH phosophoadenyly 41.8 79 0.0017 22.3 5.0 50 44-96 15-64 (212)
124 cd01456 vWA_ywmD_type VWA ywmD 40.8 32 0.00068 24.0 2.8 35 49-83 113-148 (206)
125 PF09892 DUF2119: Uncharacteri 40.7 32 0.00069 24.9 2.7 56 44-101 9-68 (193)
126 cd06327 PBP1_SBP_like_1 Peripl 39.4 1.1E+02 0.0023 22.6 5.6 37 28-64 50-88 (334)
127 PF09176 Mpt_N: Methylene-tetr 38.9 58 0.0013 20.4 3.4 25 40-64 42-66 (81)
128 TIGR01769 GGGP geranylgeranylg 38.4 38 0.00083 24.5 2.9 52 30-81 11-64 (205)
129 COG3836 HpcH 2,4-dihydroxyhept 37.7 27 0.00059 26.3 2.1 51 1-51 115-178 (255)
130 PF02829 3H: 3H domain; Inter 37.5 49 0.0011 21.2 3.1 25 23-47 74-98 (98)
131 PF00106 adh_short: short chai 37.4 53 0.0012 21.4 3.4 20 45-64 4-23 (167)
132 TIGR01500 sepiapter_red sepiap 37.3 48 0.001 23.6 3.3 11 70-80 55-65 (256)
133 PRK13982 bifunctional SbtC-lik 36.2 50 0.0011 27.0 3.6 45 42-86 70-114 (475)
134 PF11072 DUF2859: Protein of u 35.7 40 0.00086 23.2 2.5 40 20-61 90-129 (142)
135 cd06357 PBP1_AmiC Periplasmic 35.6 1.7E+02 0.0037 22.0 6.3 37 28-64 51-89 (360)
136 PF10307 DUF2410: Hypothetical 35.5 56 0.0012 23.7 3.4 33 68-102 69-101 (197)
137 TIGR00521 coaBC_dfp phosphopan 35.3 31 0.00067 27.4 2.2 43 44-86 5-47 (390)
138 PRK08576 hypothetical protein; 35.1 2.5E+02 0.0053 22.8 7.4 55 44-101 236-290 (438)
139 cd03129 GAT1_Peptidase_E_like 34.9 45 0.00097 23.5 2.8 25 34-58 105-129 (210)
140 PLN02496 probable phosphopanto 34.9 78 0.0017 23.1 4.1 43 43-86 20-62 (209)
141 PF00975 Thioesterase: Thioest 34.6 50 0.0011 22.8 3.0 33 45-79 69-102 (229)
142 PRK05579 bifunctional phosphop 34.6 36 0.00078 27.0 2.5 44 43-86 7-50 (399)
143 TIGR02700 flavo_MJ0208 archaeo 33.5 45 0.00098 24.3 2.7 42 45-86 2-46 (234)
144 cd01470 vWA_complement_factors 33.4 55 0.0012 22.6 3.0 34 50-83 82-126 (198)
145 TIGR01133 murG undecaprenyldip 32.8 78 0.0017 23.3 3.9 34 45-79 5-38 (348)
146 PF09954 DUF2188: Uncharacteri 32.1 54 0.0012 18.7 2.4 17 27-43 26-42 (62)
147 PF03575 Peptidase_S51: Peptid 32.1 38 0.00083 22.7 2.0 22 34-55 60-81 (154)
148 TIGR02057 PAPS_reductase phosp 31.7 1.2E+02 0.0027 21.9 4.7 68 28-98 12-79 (226)
149 COG3140 Uncharacterized protei 31.0 1.1E+02 0.0025 17.8 4.3 43 30-78 14-57 (60)
150 PRK15126 thiamin pyrimidine py 30.4 1.1E+02 0.0023 22.2 4.2 47 18-66 11-57 (272)
151 TIGR03765 ICE_PFL_4695 integra 30.2 51 0.0011 21.6 2.2 38 20-59 52-89 (105)
152 PF10340 DUF2424: Protein of u 29.8 1.6E+02 0.0036 23.4 5.4 30 30-59 179-212 (374)
153 PRK06765 homoserine O-acetyltr 29.5 1.8E+02 0.0039 22.8 5.6 49 27-77 141-194 (389)
154 PRK13011 formyltetrahydrofolat 29.4 2.2E+02 0.0047 21.6 5.9 51 29-80 63-127 (286)
155 TIGR03863 PQQ_ABC_bind ABC tra 29.2 2.2E+02 0.0048 21.8 6.0 36 28-64 44-81 (347)
156 TIGR03056 bchO_mg_che_rel puta 29.1 2E+02 0.0043 19.9 6.8 19 45-65 98-116 (278)
157 PRK07952 DNA replication prote 29.0 1.1E+02 0.0024 22.5 4.2 33 10-42 60-94 (244)
158 cd01450 vWFA_subfamily_ECM Von 29.0 1.6E+02 0.0034 18.7 4.8 16 68-83 102-117 (161)
159 cd01480 vWA_collagen_alpha_1-V 28.9 1.8E+02 0.0038 19.9 5.0 30 52-81 91-121 (186)
160 cd06338 PBP1_ABC_ligand_bindin 28.7 1.4E+02 0.0031 21.9 4.8 37 28-64 55-93 (345)
161 PRK08452 flagellar protein Fla 28.7 66 0.0014 21.6 2.6 26 22-47 94-120 (124)
162 COG2515 Acd 1-aminocyclopropan 28.6 2.2E+02 0.0047 22.3 5.7 57 23-79 254-312 (323)
163 cd06366 PBP1_GABAb_receptor Li 28.5 1.9E+02 0.0041 21.4 5.4 38 27-64 49-88 (350)
164 PLN03172 chalcone synthase fam 28.2 1.7E+02 0.0036 23.1 5.2 66 16-81 119-195 (393)
165 PF08282 Hydrolase_3: haloacid 28.0 47 0.001 22.9 1.9 45 20-66 9-53 (254)
166 PRK05114 hypothetical protein; 27.8 1.3E+02 0.0029 17.6 4.3 43 30-79 14-57 (59)
167 PRK10976 putative hydrolase; P 27.7 1.4E+02 0.003 21.4 4.4 48 17-66 10-57 (266)
168 PRK10162 acetyl esterase; Prov 27.4 1.5E+02 0.0033 22.2 4.7 33 29-61 132-173 (318)
169 TIGR01768 GGGP-family geranylg 27.2 60 0.0013 23.9 2.4 46 35-81 19-66 (223)
170 PRK07738 flagellar protein Fla 27.2 83 0.0018 20.9 2.9 26 22-47 87-113 (117)
171 cd02651 nuc_hydro_IU_UC_XIUA n 27.0 2E+02 0.0043 21.6 5.3 48 28-75 97-147 (302)
172 cd06337 PBP1_ABC_ligand_bindin 27.0 1.1E+02 0.0023 23.1 3.9 36 28-64 53-91 (357)
173 cd06331 PBP1_AmiC_like Type I 26.8 1.5E+02 0.0034 21.7 4.7 37 28-64 51-89 (333)
174 cd06343 PBP1_ABC_ligand_bindin 26.8 1.4E+02 0.0029 22.3 4.4 37 28-64 58-96 (362)
175 PF14401 RLAN: RimK-like ATPgr 26.5 46 0.001 22.9 1.6 28 70-98 16-43 (153)
176 cd03145 GAT1_cyanophycinase Ty 26.3 74 0.0016 22.8 2.8 25 34-58 108-132 (217)
177 PF02995 DUF229: Protein of un 26.2 92 0.002 25.4 3.5 17 69-85 332-348 (497)
178 PF03861 ANTAR: ANTAR domain; 26.2 86 0.0019 17.5 2.5 22 26-47 27-48 (56)
179 PLN02347 GMP synthetase 26.0 1.4E+02 0.0031 24.7 4.6 51 31-83 217-268 (536)
180 COG1899 DYS1 Deoxyhypusine syn 26.0 2.1E+02 0.0044 22.4 5.2 71 30-100 41-123 (318)
181 TIGR00424 APS_reduc 5'-adenyly 25.5 1.8E+02 0.0038 23.9 5.0 53 45-101 118-170 (463)
182 TIGR03183 DNA_S_dndC putative 25.2 3.1E+02 0.0067 22.3 6.3 58 34-91 3-68 (447)
183 PF03646 FlaG: FlaG protein; 24.9 68 0.0015 20.2 2.1 26 22-47 78-104 (107)
184 TIGR03407 urea_ABC_UrtA urea A 24.5 1.6E+02 0.0035 22.1 4.5 37 28-64 52-90 (359)
185 cd02812 PcrB_like PcrB_like pr 24.4 96 0.0021 22.7 3.0 38 41-80 25-64 (219)
186 cd06355 PBP1_FmdD_like Peripla 24.3 1.7E+02 0.0037 21.9 4.5 37 28-64 51-89 (348)
187 PF05762 VWA_CoxE: VWA domain 24.0 1.2E+02 0.0026 21.7 3.5 31 49-79 126-159 (222)
188 TIGR03576 pyridox_MJ0158 pyrid 23.8 1.6E+02 0.0036 22.5 4.4 35 43-80 72-106 (346)
189 COG2021 MET2 Homoserine acetyl 23.7 1.1E+02 0.0025 24.3 3.5 50 26-77 126-180 (368)
190 cd06188 NADH_quinone_reductase 23.6 1.9E+02 0.0041 21.2 4.6 45 45-92 155-199 (283)
191 PF06245 DUF1015: Protein of u 23.5 3.3E+02 0.0072 21.6 6.1 66 19-85 177-255 (416)
192 cd01482 vWA_collagen_alphaI-XI 23.4 1.2E+02 0.0025 20.2 3.2 30 52-81 78-115 (164)
193 TIGR03669 urea_ABC_arch urea A 23.4 2E+02 0.0043 22.2 4.8 37 28-64 52-90 (374)
194 cd06335 PBP1_ABC_ligand_bindin 23.2 1.5E+02 0.0032 22.1 4.0 37 28-64 51-89 (347)
195 COG0657 Aes Esterase/lipase [L 23.0 1.3E+02 0.0027 22.3 3.6 40 25-64 126-174 (312)
196 PRK12829 short chain dehydroge 23.0 67 0.0014 22.6 2.0 39 34-76 4-42 (264)
197 KOG1198 Zinc-binding oxidoredu 22.8 1.2E+02 0.0025 23.7 3.4 35 45-82 162-196 (347)
198 cd06332 PBP1_aromatic_compound 22.6 3E+02 0.0065 19.9 5.5 35 28-63 49-86 (333)
199 TIGR00696 wecB_tagA_cpsF bacte 22.5 2.8E+02 0.006 19.4 5.8 50 24-75 28-80 (177)
200 COG1606 ATP-utilizing enzymes 22.5 2.9E+02 0.0063 21.1 5.3 47 33-81 7-54 (269)
201 COG0299 PurN Folate-dependent 22.4 88 0.0019 22.8 2.5 32 51-83 10-41 (200)
202 PLN03173 chalcone synthase; Pr 22.2 1.8E+02 0.0038 23.0 4.4 66 16-81 119-195 (391)
203 PRK08862 short chain dehydroge 22.1 1.3E+02 0.0027 21.3 3.3 22 43-64 7-28 (227)
204 PRK13685 hypothetical protein; 22.1 3.4E+02 0.0075 20.5 5.8 37 47-83 164-207 (326)
205 COG0163 UbiX 3-polyprenyl-4-hy 22.0 61 0.0013 23.5 1.6 40 43-82 3-42 (191)
206 PLN02331 phosphoribosylglycina 22.0 1.7E+02 0.0038 21.0 4.0 33 48-81 6-38 (207)
207 PF01650 Peptidase_C13: Peptid 21.9 1.5E+02 0.0032 22.1 3.7 27 53-79 19-45 (256)
208 cd06210 MMO_FAD_NAD_binding Me 21.8 2.2E+02 0.0047 20.0 4.5 20 45-64 113-132 (236)
209 COG2388 Predicted acetyltransf 21.6 2.1E+02 0.0045 18.4 3.9 31 30-62 58-88 (99)
210 PRK08303 short chain dehydroge 21.4 1.2E+02 0.0027 22.6 3.2 30 42-75 9-38 (305)
211 cd03146 GAT1_Peptidase_E Type 21.4 92 0.002 22.1 2.5 22 37-58 108-129 (212)
212 PF00883 Peptidase_M17: Cytoso 21.4 1.5E+02 0.0033 23.0 3.7 28 50-78 110-137 (311)
213 PRK05854 short chain dehydroge 21.3 1.3E+02 0.0028 22.4 3.3 21 43-63 16-36 (313)
214 cd06356 PBP1_Amide_Urea_BP_lik 21.3 2.5E+02 0.0053 20.8 4.8 37 28-64 51-89 (334)
215 cd00458 SugarP_isomerase Sugar 21.2 2.3E+02 0.005 19.3 4.4 39 41-79 18-58 (169)
216 COG1334 FlaG Uncharacterized f 21.2 95 0.0021 20.8 2.3 24 24-47 93-116 (120)
217 PRK05282 (alpha)-aspartyl dipe 21.1 1E+02 0.0023 22.6 2.7 32 24-55 82-125 (233)
218 PRK00074 guaA GMP synthase; Re 21.0 1.4E+02 0.003 24.5 3.6 50 30-81 203-252 (511)
219 cd01454 vWA_norD_type norD typ 20.9 1.7E+02 0.0037 19.6 3.6 15 68-82 102-116 (174)
220 cd01453 vWA_transcription_fact 20.9 1.3E+02 0.0028 20.8 3.0 34 48-81 81-119 (183)
221 TIGR01487 SPP-like sucrose-pho 20.9 2.4E+02 0.0051 19.5 4.5 47 18-66 10-56 (215)
222 PRK08275 putative oxidoreducta 20.8 1.5E+02 0.0032 24.3 3.8 30 44-75 11-40 (554)
223 PRK12481 2-deoxy-D-gluconate 3 20.7 1.3E+02 0.0029 21.3 3.2 22 43-64 10-31 (251)
224 PLN03170 chalcone synthase; Pr 20.6 2.1E+02 0.0045 22.6 4.5 69 16-84 123-202 (401)
225 PRK10513 sugar phosphate phosp 20.6 2.1E+02 0.0045 20.5 4.2 48 17-66 11-58 (270)
226 cd01494 AAT_I Aspartate aminot 20.6 2.4E+02 0.0051 17.8 4.5 30 31-60 4-35 (170)
227 PRK13940 glutamyl-tRNA reducta 20.6 3E+02 0.0065 22.0 5.4 47 30-78 142-190 (414)
228 cd06408 PB1_NoxR The PB1 domai 20.6 1E+02 0.0022 19.4 2.2 27 22-48 49-79 (86)
229 COG3967 DltE Short-chain dehyd 20.6 98 0.0021 23.2 2.4 49 45-94 9-73 (245)
230 PRK04452 acetyl-CoA decarbonyl 20.5 3E+02 0.0064 21.4 5.2 48 29-79 138-185 (319)
231 PF00656 Peptidase_C14: Caspas 20.4 3.1E+02 0.0066 19.1 5.7 54 28-82 20-78 (248)
232 PRK13978 ribose-5-phosphate is 20.3 3.1E+02 0.0067 20.3 5.0 37 38-75 17-54 (228)
233 PF00890 FAD_binding_2: FAD bi 20.3 1.4E+02 0.003 23.0 3.4 29 46-78 3-31 (417)
234 TIGR00099 Cof-subfamily Cof su 20.2 1.7E+02 0.0036 20.9 3.6 48 17-66 7-54 (256)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=99.94 E-value=7.1e-27 Score=176.37 Aligned_cols=84 Identities=65% Similarity=0.976 Sum_probs=81.6
Q ss_pred CCCcccCCCCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Q 037531 1 HHKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSG 80 (106)
Q Consensus 1 ~~~i~GiG~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g 80 (106)
||.|||||.+|+|.+++.+++|++++|+|+||++++|+|+++||+++|+||||+++||+++++++. ++++||+|+||+|
T Consensus 216 ~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~~~-~g~~IVti~pD~G 294 (300)
T COG0031 216 PHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELP-AGKTIVTILPDSG 294 (300)
T ss_pred CcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHhcC-CCCeEEEEECCCc
Confidence 688999999999999999999999999999999999999999999999999999999999999985 6899999999999
Q ss_pred ccccC
Q 037531 81 ERYLS 85 (106)
Q Consensus 81 ~kY~s 85 (106)
+||+|
T Consensus 295 ~RYls 299 (300)
T COG0031 295 ERYLS 299 (300)
T ss_pred ccccC
Confidence 99998
No 2
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=99.91 E-value=4.8e-25 Score=167.87 Aligned_cols=98 Identities=63% Similarity=0.973 Sum_probs=89.9
Q ss_pred CCcccCCCCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 2 ~~i~GiG~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
|.|+|||+|++|.++|..++|+++.++++||+.++|+|+.+||+++|+|||+|+++|++++++.+..++-||+++||.|+
T Consensus 263 ~~I~GIGyg~~p~~ld~~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~a~~~en~~kliV~~~pd~ge 342 (362)
T KOG1252|consen 263 HKIQGIGYGFIPTTLDTKLVDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKLAKRPENAGKLIVVTFPDFGE 342 (362)
T ss_pred cceeccccCcCccccchHHHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHHHhccccCCcEEEEECCCcch
Confidence 89999999999999999999999999999999999999999999999999999999999999876455666666699999
Q ss_pred cccChhhcHHHHHHHhcC
Q 037531 82 RYLSSEMFDAERQAAENM 99 (106)
Q Consensus 82 kY~s~~~~~~~~~~~~~~ 99 (106)
+|++|++|++|+..+..+
T Consensus 343 ~Y~st~L~d~w~~e~~~~ 360 (362)
T KOG1252|consen 343 RYLSTFLFDEWREEAEKL 360 (362)
T ss_pred hhhhhhhHHHHHHHHhhh
Confidence 999999888888777665
No 3
>PLN02565 cysteine synthase
Probab=99.89 E-value=7.2e-23 Score=156.00 Aligned_cols=102 Identities=75% Similarity=1.075 Sum_probs=93.4
Q ss_pred CCCcccCCCCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Q 037531 1 HHKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSG 80 (106)
Q Consensus 1 ~~~i~GiG~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g 80 (106)
++.++|+|.+++|..++.+.+|+++.|+|+|++++++.|++++|+++|+|||++++++++++++...++++||+++||+|
T Consensus 220 ~~~~~glg~~~~~~~~~~~~vd~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~~~~~~~vV~v~~d~G 299 (322)
T PLN02565 220 PHKIQGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIVVIFPSFG 299 (322)
T ss_pred CccCCCCCCCCCCCcCCHhHCCEEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhcCCCCCeEEEEECCCc
Confidence 36689999999999999999999999999999999999999999999999999999999999876445789999999999
Q ss_pred ccccChhhcHHHHHHHhcCccc
Q 037531 81 ERYLSSEMFDAERQAAENMAYV 102 (106)
Q Consensus 81 ~kY~s~~~~~~~~~~~~~~~~~ 102 (106)
+||+++.+|+++...+++|.+.
T Consensus 300 ~ky~~~~~~~~~~~~~~~~~~~ 321 (322)
T PLN02565 300 ERYLSSVLFESVKKEAENMVFE 321 (322)
T ss_pred cccCCchhhHHHHHHHhcCccC
Confidence 9999999999888888888763
No 4
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=99.88 E-value=2e-22 Score=156.06 Aligned_cols=102 Identities=53% Similarity=0.844 Sum_probs=93.5
Q ss_pred CCcccCCCCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 2 ~~i~GiG~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
|.++|+|.++.|.+++.+.+|+++.|+|+|++++++.|++++|+++|+|||++++++++++++...++++||+|+||+|+
T Consensus 265 ~~i~g~g~~~~p~~~~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~~~~~~~IV~v~~d~g~ 344 (368)
T PLN02556 265 HHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENKGKLIVTVHPSFGE 344 (368)
T ss_pred eeeeeccCCCCccccchhhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCcCEEEEEECCCCc
Confidence 56789999988999999999999999999999999999999999999999999999999998764457899999999999
Q ss_pred cccChhhcHHHHHHHhcCcccc
Q 037531 82 RYLSSEMFDAERQAAENMAYVS 103 (106)
Q Consensus 82 kY~s~~~~~~~~~~~~~~~~~~ 103 (106)
||+++.+|++|...++.|-+++
T Consensus 345 kY~~~~~~~~~~~~~~~~~~~~ 366 (368)
T PLN02556 345 RYLSSVLFQELRKEAENMQPVS 366 (368)
T ss_pred ccCChhhhHHHHHHHHhcCCcC
Confidence 9999989999998888887654
No 5
>PLN02356 phosphateglycerate kinase
Probab=99.88 E-value=1.7e-22 Score=158.89 Aligned_cols=97 Identities=30% Similarity=0.437 Sum_probs=89.0
Q ss_pred CCcccCCCCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 2 ~~i~GiG~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
+.++|||.+++|.+++.+.+|+++.|+|+|+++++|+|++++|+++|+|||++++++++++++.. ++++||+|+||+|.
T Consensus 316 tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~~la~~~~-~g~~VV~Il~d~G~ 394 (423)
T PLN02356 316 TITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSLG-PGHTIVTILCDSGM 394 (423)
T ss_pred eecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHHHHHHHHHHHHHHhC-CCCeEEEEECCCCc
Confidence 56899999999999999999999999999999999999999999999999999999999998753 57899999999999
Q ss_pred cccChhhcHHHHHHHhcCc
Q 037531 82 RYLSSEMFDAERQAAENMA 100 (106)
Q Consensus 82 kY~s~~~~~~~~~~~~~~~ 100 (106)
||+|+ +|++.|+..+++.
T Consensus 395 kyl~~-~~~~~w~~~~~~~ 412 (423)
T PLN02356 395 RHLSK-FHDPQYLSQHGLT 412 (423)
T ss_pred chhhh-hcCHHHHHhcCCC
Confidence 99999 6777777877765
No 6
>PRK10717 cysteine synthase A; Provisional
Probab=99.85 E-value=7.1e-21 Score=144.81 Aligned_cols=99 Identities=34% Similarity=0.524 Sum_probs=87.9
Q ss_pred CCcccCCCCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 2 ~~i~GiG~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
+.++|+|.+.+|.+++...+|+++.|+|+|++++++.|++++|+++|||||++++++++++++. .++++||+|+||+|.
T Consensus 231 ~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~laa~~~l~~~~-~~~~~Vv~v~~g~g~ 309 (330)
T PRK10717 231 SITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRLAREL-GPGHTIVTILCDSGE 309 (330)
T ss_pred cccCcCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHHHHHHHHHHhc-CCCCEEEEEECCCch
Confidence 5678999888888888888999999999999999999999999999999999999999998875 367899999999999
Q ss_pred cccChhhcHHHHHHHhcCccc
Q 037531 82 RYLSSEMFDAERQAAENMAYV 102 (106)
Q Consensus 82 kY~s~~~~~~~~~~~~~~~~~ 102 (106)
||+++ +|+|.|+..++++..
T Consensus 310 ky~~~-~~~d~~~~~~~~~~~ 329 (330)
T PRK10717 310 RYQSK-LFNPDFLREKGLPVP 329 (330)
T ss_pred hhccc-ccCHHHHHhcCCCCC
Confidence 99999 566667777776543
No 7
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=99.85 E-value=1.5e-21 Score=146.73 Aligned_cols=97 Identities=32% Similarity=0.522 Sum_probs=90.4
Q ss_pred CcccCCCCCCCcCccc--CccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Q 037531 3 KIQGIGIGFVPSVLDV--SILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSG 80 (106)
Q Consensus 3 ~i~GiG~~~~p~~~~~--~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g 80 (106)
..||||.++++.||.. .++|+.++|+|++|++|.|.|..++|+|+|+||+.|..||.++|+.+. ++.+||+|+||+|
T Consensus 281 i~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGsSsa~N~VaAv~vAk~Lg-pG~~iVtilCDsG 359 (391)
T KOG1481|consen 281 ITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGSSSALNCVAAVRVAKTLG-PGHTIVTILCDSG 359 (391)
T ss_pred hhhcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEecchhhHHHHHHHHHHHhcC-CCceEEEEEeCCc
Confidence 5799999999999985 679999999999999999999999999999999999999999999995 7999999999999
Q ss_pred ccccChhhcHHHHHHHhcCcc
Q 037531 81 ERYLSSEMFDAERQAAENMAY 101 (106)
Q Consensus 81 ~kY~s~~~~~~~~~~~~~~~~ 101 (106)
.||+|+ +|++..+..+++-.
T Consensus 360 ~rh~sk-~~~~~~l~~~~l~p 379 (391)
T KOG1481|consen 360 SRHLSK-LFSESFLESKKLSP 379 (391)
T ss_pred chHHHH-hcCHHHHhhcCCCc
Confidence 999999 78887888887763
No 8
>PLN00011 cysteine synthase
Probab=99.84 E-value=1.7e-20 Score=142.71 Aligned_cols=100 Identities=68% Similarity=1.006 Sum_probs=89.9
Q ss_pred CCcccCCCCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 2 ~~i~GiG~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
+.++|+|.+.+|..++...+|+++.|+|+|++++++.|++++|+++|+|||++++++++++++...++++||+|+||+|.
T Consensus 223 ~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~~~~~~~vv~i~~d~G~ 302 (323)
T PLN00011 223 HLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENAGKLIVVIFPSGGE 302 (323)
T ss_pred CCCCCCCCCCCCcccChhhCCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhccCCCCeEEEEECCCcc
Confidence 56789998888988888999999999999999999999999999999999999999999987653357899999999999
Q ss_pred cccChhhcHHHHHHHhcCcc
Q 037531 82 RYLSSEMFDAERQAAENMAY 101 (106)
Q Consensus 82 kY~s~~~~~~~~~~~~~~~~ 101 (106)
||+||.+|+.+...++++++
T Consensus 303 ky~~~~~~~~~~~~~~~~~~ 322 (323)
T PLN00011 303 RYLSTKLFESVRYEAENLPI 322 (323)
T ss_pred ccCChhhhHHHHHhhhcCCC
Confidence 99999999987766688765
No 9
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.83 E-value=3.2e-20 Score=145.68 Aligned_cols=97 Identities=37% Similarity=0.586 Sum_probs=84.9
Q ss_pred CCcccCCCCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHH-hCCCCCEEEEEeCCCC
Q 037531 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKR-AENAGKLIVVIFPSSG 80 (106)
Q Consensus 2 ~~i~GiG~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~-~~~~~~~Vv~i~~D~g 80 (106)
+.++|+|.+.+|..++++.+|+++.|+|+|++++++.|++++|+++|||||++++++++++++ . .++++||+++||+|
T Consensus 224 ~~~~g~~~~~~~~~~~~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~~~~~~-~~~~~vv~~~~d~g 302 (454)
T TIGR01137 224 YKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAEDEL-TEDQVIVVLLPDSI 302 (454)
T ss_pred ccCCCCCCCCCCCcCCchhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHHHHhhc-CCCCEEEEEECCCC
Confidence 467899888889999999999999999999999999999999999999999999999999884 4 35789999999999
Q ss_pred ccccChhhcHHHHHHHhcCc
Q 037531 81 ERYLSSEMFDAERQAAENMA 100 (106)
Q Consensus 81 ~kY~s~~~~~~~~~~~~~~~ 100 (106)
+||+++.+++ .|+.++++.
T Consensus 303 ~~y~~~~~~~-~w~~~~~~~ 321 (454)
T TIGR01137 303 RNYMTKFLND-EWMKDNGFL 321 (454)
T ss_pred ccccCcccCh-HHHHhcCCc
Confidence 9999995454 466665553
No 10
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=99.79 E-value=5.5e-19 Score=132.66 Aligned_cols=87 Identities=66% Similarity=1.016 Sum_probs=79.8
Q ss_pred CCcccCCCCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 2 ~~i~GiG~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
+.++|+|.+.+|..++...+|+++.|+|+|++++++.|++++|+++|||||++++++++++++.. ++++||+++||+|+
T Consensus 212 ~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~~~-~~~~vv~v~~d~G~ 290 (298)
T TIGR01139 212 HKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKRPE-PDKLIVVILPSTGE 290 (298)
T ss_pred CCCCCCCCCCCCCccChhhCCEEEEECHHHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHhcC-CCCEEEEEECCCCc
Confidence 45789998889999999999999999999999999999999999999999999999999998763 67899999999999
Q ss_pred cccChhhc
Q 037531 82 RYLSSEMF 89 (106)
Q Consensus 82 kY~s~~~~ 89 (106)
||+++..|
T Consensus 291 ky~~~~~~ 298 (298)
T TIGR01139 291 RYLSTPLF 298 (298)
T ss_pred cccCcccC
Confidence 99998543
No 11
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=99.79 E-value=4.8e-19 Score=133.10 Aligned_cols=84 Identities=33% Similarity=0.648 Sum_probs=76.4
Q ss_pred cccCCCCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccc
Q 037531 4 IQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERY 83 (106)
Q Consensus 4 i~GiG~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY 83 (106)
+++++.++.|.+++...+|+++.|+|+|+++++++|++++|+++|+|||+++++++++++++ ++++||+|+||+|+||
T Consensus 207 ~~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~~--~~~~vv~v~~d~g~ky 284 (290)
T TIGR01138 207 IRRWPTEYLPGIFDASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAREL--PDAVVVAIICDRGDRY 284 (290)
T ss_pred CCCCCCCcCCcccChhhCcEEEEECHHHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHHC--CCCeEEEEECCCCccc
Confidence 45566788899999889999999999999999999999999999999999999999998875 4689999999999999
Q ss_pred cChhhc
Q 037531 84 LSSEMF 89 (106)
Q Consensus 84 ~s~~~~ 89 (106)
+|+.+|
T Consensus 285 ~~~~~~ 290 (290)
T TIGR01138 285 LSTGVF 290 (290)
T ss_pred cCcccC
Confidence 998544
No 12
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=99.79 E-value=9e-19 Score=131.64 Aligned_cols=88 Identities=63% Similarity=1.021 Sum_probs=80.0
Q ss_pred CCcccCCCCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 2 ~~i~GiG~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
+.+++|+.+.+|..++.+.+|+++.|+|+|++++++.|++++|+++|||||++++++++++++...++++||+|+||+|.
T Consensus 212 ~~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~~~~~~~vv~i~~d~g~ 291 (299)
T TIGR01136 212 HKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRLENADKVIVAILPDTGE 291 (299)
T ss_pred ccCCCCCCCCCCccCChhhCCEEEEECHHHHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 45788998889999999999999999999999999999999999999999999999999998753357899999999999
Q ss_pred cccChhhc
Q 037531 82 RYLSSEMF 89 (106)
Q Consensus 82 kY~s~~~~ 89 (106)
||++++.|
T Consensus 292 ky~~~~~~ 299 (299)
T TIGR01136 292 RYLSTGLF 299 (299)
T ss_pred cccCcccC
Confidence 99998544
No 13
>PLN03013 cysteine synthase
Probab=99.78 E-value=4.8e-19 Score=139.55 Aligned_cols=87 Identities=63% Similarity=0.890 Sum_probs=78.6
Q ss_pred CCCcccCCCCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCE-EEEEeCCC
Q 037531 1 HHKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKL-IVVIFPSS 79 (106)
Q Consensus 1 ~~~i~GiG~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~-Vv~i~~D~ 79 (106)
+|.++|+|.+++|.+++.+.+|+++.|+|+|+++++++|++++|+++|+|||++++++++++++...++++ ||++++|+
T Consensus 328 ~~~i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~~~~g~~IVv~i~~d~ 407 (429)
T PLN03013 328 PHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVSLFASG 407 (429)
T ss_pred CcccCcccCCcCCHhHHHHhccEEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCCCEEEEEEcCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999865434565 47888999
Q ss_pred CccccChh
Q 037531 80 GERYLSSE 87 (106)
Q Consensus 80 g~kY~s~~ 87 (106)
|+||.++.
T Consensus 408 g~~Y~~~~ 415 (429)
T PLN03013 408 RDIYTPRC 415 (429)
T ss_pred chhchhhh
Confidence 99999984
No 14
>PRK11761 cysM cysteine synthase B; Provisional
Probab=99.78 E-value=1.1e-18 Score=131.43 Aligned_cols=83 Identities=37% Similarity=0.620 Sum_probs=74.1
Q ss_pred cCCCCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccC
Q 037531 6 GIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLS 85 (106)
Q Consensus 6 GiG~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s 85 (106)
+++....|.++++..+|+++.|+|+|++++++.|++++|+++|+|||++++++++++++. ++++||+|+||+|+||+|
T Consensus 213 ~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~~--~~~~vV~v~~d~g~ky~~ 290 (296)
T PRK11761 213 RWPEEYLPKIFDASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIAREN--PNAVIVAIICDRGDRYLS 290 (296)
T ss_pred CCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHHC--CCCeEEEEECCCCcccCC
Confidence 333556778888899999999999999999999999999999999999999999998874 578999999999999999
Q ss_pred hhhcH
Q 037531 86 SEMFD 90 (106)
Q Consensus 86 ~~~~~ 90 (106)
|.+|+
T Consensus 291 ~~~~~ 295 (296)
T PRK11761 291 TGVFP 295 (296)
T ss_pred hhccc
Confidence 96554
No 15
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=99.72 E-value=5.9e-17 Score=121.18 Aligned_cols=83 Identities=64% Similarity=0.938 Sum_probs=77.1
Q ss_pred CCcccCCCCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 2 ~~i~GiG~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
+.++|||.+.+|..++...+|+++.|+|+|++++++.|++++|+++|||||+++++++++++++. ++++||+|+||+|.
T Consensus 209 ~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~a~~~~~~~~~~-~~~~vv~v~~~~g~ 287 (291)
T cd01561 209 HKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAKRLG-PGKTIVTILPDSGE 287 (291)
T ss_pred CcCCCCCCCCCCCccCchhCceeEEECHHHHHHHHHHHHHHhCeeEcccHHHHHHHHHHHHHhcC-CCCeEEEEECCCcc
Confidence 45789998888999988899999999999999999999999999999999999999999998764 67899999999999
Q ss_pred cccC
Q 037531 82 RYLS 85 (106)
Q Consensus 82 kY~s 85 (106)
||+|
T Consensus 288 ky~~ 291 (291)
T cd01561 288 RYLS 291 (291)
T ss_pred ccCC
Confidence 9986
No 16
>PLN02618 tryptophan synthase, beta chain
Probab=99.59 E-value=3.2e-15 Score=117.45 Aligned_cols=72 Identities=24% Similarity=0.286 Sum_probs=66.4
Q ss_pred cCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 14 SVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 14 ~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
..++...+|+++.|+|+||+++++.|+++|||++|+|||+++++++++++++. ++++||+++||+|+||+++
T Consensus 330 ~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~a~a~a~~~a~~l~-~~~~iVv~lsgrG~Kd~~~ 401 (410)
T PLN02618 330 SFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETSHALAYLEKLCPTLP-DGTKVVVNCSGRGDKDVNT 401 (410)
T ss_pred HHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHhHhcC-CCCEEEEEeCCCCcCCHHH
Confidence 34555688999999999999999999999999999999999999999998864 6889999999999999998
No 17
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=99.58 E-value=4.8e-15 Score=114.59 Aligned_cols=70 Identities=39% Similarity=0.463 Sum_probs=64.5
Q ss_pred cccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 16 LDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 16 ~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
+..+.+|+++.|+|+|++++++.|++++||++|+|||++++++++++++. .++++||+|+||+|.||++|
T Consensus 295 ~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa~~~~~~~~-~~~~~Vv~i~~g~G~k~~~~ 364 (365)
T cd06446 295 LKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKL-GKEKVIVVNLSGRGDKDLQT 364 (365)
T ss_pred HHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHHHHHHHHhc-CCCCeEEEEeCCCCcccccc
Confidence 44567899999999999999999999999999999999999999999876 35789999999999999987
No 18
>PRK06721 threonine synthase; Reviewed
Probab=99.51 E-value=4.3e-14 Score=108.82 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=66.3
Q ss_pred CccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhC-CCCCEEEEEeCCCCccccChhhcHHHHHHHh
Q 037531 19 SILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE-NAGKLIVVIFPSSGERYLSSEMFDAERQAAE 97 (106)
Q Consensus 19 ~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~-~~~~~Vv~i~~D~g~kY~s~~~~~~~~~~~~ 97 (106)
..+|+++.|+|+|++++++.|+++||+++|||||++++++++++++.. .++++||+++||+|+||+.+ ++++.|.+.+
T Consensus 255 ~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~~-~~~~~~~~~~ 333 (352)
T PRK06721 255 QSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPDI-AISSNTLDIA 333 (352)
T ss_pred hcCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCcCchHH-HhhhccCCcc
Confidence 478999999999999999999999999999999999999999987531 35789999999999999988 4544443333
No 19
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=99.49 E-value=8.2e-14 Score=115.29 Aligned_cols=66 Identities=26% Similarity=0.356 Sum_probs=60.3
Q ss_pred cCeE--EEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCC---CCCEEEEEeCCCCccccCh
Q 037531 21 LDEV--VRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAEN---AGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 21 vD~~--i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~---~~~~Vv~i~~D~g~kY~s~ 86 (106)
++++ +.|+|+||+++++.|+++|||++|+|||+++++++++++++.. .+++||+++||+|+||+++
T Consensus 598 ~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~ 668 (695)
T PRK13802 598 IGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNT 668 (695)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHH
Confidence 5666 8999999999999999999999999999999999999987742 2459999999999999998
No 20
>PRK06608 threonine dehydratase; Provisional
Probab=99.49 E-value=4.6e-14 Score=108.34 Aligned_cols=75 Identities=15% Similarity=0.061 Sum_probs=63.6
Q ss_pred CccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCC--ccccChhhcHHHHH
Q 037531 19 SILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSG--ERYLSSEMFDAERQ 94 (106)
Q Consensus 19 ~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g--~kY~s~~~~~~~~~ 94 (106)
..+|+++.|+|+|++++++.|++++|+++|||||++++++++++++.. ++++||+++||++ .+|+++.+..+|+.
T Consensus 249 ~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~~~~~~~-~~~~Vv~v~tgg~~d~~~~~~~~~~~~~~ 325 (338)
T PRK06608 249 KKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNWLKTQS-KPQKLLVILSGGNIDPILYNELWKEDYLT 325 (338)
T ss_pred HhCCCEEEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHhhchhhc-CCCeEEEEeCCCccCHHHHHHHHHHhhhc
Confidence 457999999999999999999999999999999999999999887653 5789999999966 77888843334443
No 21
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=99.48 E-value=1.1e-13 Score=107.74 Aligned_cols=68 Identities=25% Similarity=0.332 Sum_probs=62.6
Q ss_pred cCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 18 VSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 18 ~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
...+|+++.|+|+|+++++++|+++|||++|+|||+++++++++++++. ++++||+++||+|.||+++
T Consensus 313 ~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~~~~l~-~~~~Vv~i~~g~G~~d~~~ 380 (385)
T TIGR00263 313 ETGRATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAPTLP-KDQIVVVNLSGRGDKDIFT 380 (385)
T ss_pred hcCCeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHHHHhCC-CCCeEEEEeCCCCcCCHHH
Confidence 3457899999999999999999999999999999999999999988763 6889999999999999987
No 22
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=99.47 E-value=1.3e-13 Score=108.25 Aligned_cols=67 Identities=28% Similarity=0.328 Sum_probs=62.6
Q ss_pred CccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 19 SILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 19 ~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
...|+++.|+|+||+++++.|+++|||++|+|||+++++++++++++. ++++||+++||+|+||+++
T Consensus 326 ~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~~l~-~~~~VVv~lsG~G~kd~~~ 392 (402)
T PRK13028 326 IGRVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAPELS-KDETILVNLSGRGDKDIDY 392 (402)
T ss_pred hcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhhhcC-CCCeEEEEECCCCccCHHH
Confidence 456899999999999999999999999999999999999999998863 6889999999999999997
No 23
>PRK07334 threonine dehydratase; Provisional
Probab=99.47 E-value=5.8e-14 Score=109.71 Aligned_cols=83 Identities=20% Similarity=0.282 Sum_probs=70.7
Q ss_pred CCcccCC---CCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCC
Q 037531 2 HKIQGIG---IGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPS 78 (106)
Q Consensus 2 ~~i~GiG---~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D 78 (106)
+..+||| .+.+|..++++.+|+++.|+|+|++++++.|++++|+++|+|||+++++++++.++. ++++||+++||
T Consensus 227 ~~~~gi~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~~~~~--~~~~vv~i~~g 304 (403)
T PRK07334 227 TIAEGIAVKQPGQLTLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAYPERF--RGRKVGLVLSG 304 (403)
T ss_pred CccceecCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhCchhc--CCCeEEEEECC
Confidence 4567887 457788888899999999999999999999999999999999999999999877653 57899999999
Q ss_pred CC--ccccCh
Q 037531 79 SG--ERYLSS 86 (106)
Q Consensus 79 ~g--~kY~s~ 86 (106)
+. .+++++
T Consensus 305 gn~d~~~l~~ 314 (403)
T PRK07334 305 GNIDTRLLAN 314 (403)
T ss_pred CCCCHHHHHH
Confidence 64 344554
No 24
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=99.44 E-value=6.2e-13 Score=104.84 Aligned_cols=91 Identities=25% Similarity=0.358 Sum_probs=68.9
Q ss_pred CcccCCCCCCCcCcc-----------------cCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHh
Q 037531 3 KIQGIGIGFVPSVLD-----------------VSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRA 65 (106)
Q Consensus 3 ~i~GiG~~~~p~~~~-----------------~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~ 65 (106)
.+.++|.+++|+... ...+++++.|+|+|++++++.|+++|||++|||||++++++++++++.
T Consensus 309 ~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~ 388 (419)
T TIGR01415 309 KMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKC 388 (419)
T ss_pred eeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhc
Confidence 356788888887642 234567899999999999999999999999999999999999999876
Q ss_pred CCCCCEEEEEeCCCCccccChhhcHHHH
Q 037531 66 ENAGKLIVVIFPSSGERYLSSEMFDAER 93 (106)
Q Consensus 66 ~~~~~~Vv~i~~D~g~kY~s~~~~~~~~ 93 (106)
...++..+++++++|..|++...|++++
T Consensus 389 ~~~~~~~vvv~~lsG~G~~d~~~y~~~~ 416 (419)
T TIGR01415 389 RETGEEKVILFNLSGHGLLDLKAYAKYL 416 (419)
T ss_pred CcCCCCeEEEEEcCCCCcCCHHHHHHHh
Confidence 4335555555555555555554566643
No 25
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=99.44 E-value=5e-13 Score=105.58 Aligned_cols=91 Identities=31% Similarity=0.385 Sum_probs=67.5
Q ss_pred CcccCCCCCCCcCccc-----------------CccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHh
Q 037531 3 KIQGIGIGFVPSVLDV-----------------SILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRA 65 (106)
Q Consensus 3 ~i~GiG~~~~p~~~~~-----------------~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~ 65 (106)
.+.++|.+++|+.... ..+++++.|+|+|++++++.|+++|||++|||||++++++++++++.
T Consensus 318 ~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~ 397 (427)
T PRK12391 318 KMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKA 397 (427)
T ss_pred eeEecCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhc
Confidence 3568888888876521 23358899999999999999999999999999999999999998764
Q ss_pred CCCCCEEEEEeCCCCccccChhhcHHHH
Q 037531 66 ENAGKLIVVIFPSSGERYLSSEMFDAER 93 (106)
Q Consensus 66 ~~~~~~Vv~i~~D~g~kY~s~~~~~~~~ 93 (106)
...+...+++++++|..|++...|++++
T Consensus 398 ~~~~~~~~iv~~lsG~G~~d~~~y~~~l 425 (427)
T PRK12391 398 KEEGEEKVILFNLSGHGLLDLAAYDAYL 425 (427)
T ss_pred cccCCCCEEEEEeCCCCCCCHHHHHHHh
Confidence 2222333455555555566665666643
No 26
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=99.44 E-value=2e-13 Score=106.96 Aligned_cols=69 Identities=28% Similarity=0.362 Sum_probs=63.7
Q ss_pred ccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 17 DVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 17 ~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
.....|+++.|+|+||+++++.|+++|||++|++|++++++++++++++. ++++||+++||+|+||+++
T Consensus 320 ~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~~l~-~~~~Vvv~lsGrG~kd~~~ 388 (397)
T PRK04346 320 KDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAPTLG-KDQIIVVNLSGRGDKDVFT 388 (397)
T ss_pred HhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhhhcC-CCCeEEEEeCCCCccCHHH
Confidence 44667899999999999999999999999999999999999999988763 6789999999999999998
No 27
>PRK06352 threonine synthase; Validated
Probab=99.41 E-value=3.3e-13 Score=103.94 Aligned_cols=64 Identities=22% Similarity=0.384 Sum_probs=58.2
Q ss_pred EEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHh-CCCCCEEEEEeCCCCccccChh
Q 037531 24 VVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRA-ENAGKLIVVIFPSSGERYLSSE 87 (106)
Q Consensus 24 ~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~-~~~~~~Vv~i~~D~g~kY~s~~ 87 (106)
++.|+|+|++++++.|++++|+++|||||++++++++++++. ..++++||+++||+|.||+++.
T Consensus 260 ~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~ 324 (351)
T PRK06352 260 IHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTA 324 (351)
T ss_pred EEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCChHHH
Confidence 899999999999999999999999999999999999988742 1357899999999999999884
No 28
>PRK07409 threonine synthase; Validated
Probab=99.40 E-value=1e-12 Score=101.11 Aligned_cols=66 Identities=23% Similarity=0.307 Sum_probs=59.6
Q ss_pred cCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHh-CCCCCEEEEEeCCCCccccCh
Q 037531 21 LDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRA-ENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 21 vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~-~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
.++++.|+|+|++++++.|++++|+++|||||++++++++++++. ..++++||+++||+|.||+++
T Consensus 261 ~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~ 327 (353)
T PRK07409 261 GGLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDT 327 (353)
T ss_pred CCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEecCccccchHH
Confidence 357899999999999999999999999999999999999988762 135789999999999999998
No 29
>PRK06815 hypothetical protein; Provisional
Probab=99.39 E-value=8e-13 Score=100.36 Aligned_cols=78 Identities=27% Similarity=0.372 Sum_probs=65.3
Q ss_pred CcccCCCCCCCcC----cccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCC
Q 037531 3 KIQGIGIGFVPSV----LDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPS 78 (106)
Q Consensus 3 ~i~GiG~~~~p~~----~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D 78 (106)
..+|++.+..|.. +..+.+|+++.|+|+|++++++.|++++|+++|||||++++++++++++. ++++||+|+||
T Consensus 227 ~~~gl~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~~--~~~~vv~i~tG 304 (317)
T PRK06815 227 LSDGTAGGVEPGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPRY--QGKKVAVVLCG 304 (317)
T ss_pred hhhhhccCCcccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchhc--CCCcEEEEECC
Confidence 3445544433333 44678999999999999999999999999999999999999999988764 57899999999
Q ss_pred CCcc
Q 037531 79 SGER 82 (106)
Q Consensus 79 ~g~k 82 (106)
++.+
T Consensus 305 ~~~~ 308 (317)
T PRK06815 305 KNIV 308 (317)
T ss_pred CCCC
Confidence 9876
No 30
>PLN02569 threonine synthase
Probab=99.36 E-value=1.8e-12 Score=103.82 Aligned_cols=81 Identities=23% Similarity=0.327 Sum_probs=66.0
Q ss_pred cccCCCCCCCcCcccCcc-----Ce-EEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHh-CCCCCEEEEEe
Q 037531 4 IQGIGIGFVPSVLDVSIL-----DE-VVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRA-ENAGKLIVVIF 76 (106)
Q Consensus 4 i~GiG~~~~p~~~~~~~v-----D~-~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~-~~~~~~Vv~i~ 76 (106)
.+||+.+ .|.+++..+. |+ ++.|+|+|++++++. ++++|+++|||||+++++++++.++. ..++++||+++
T Consensus 357 A~gi~i~-~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssAaalAal~kl~~~g~i~~~~~VV~i~ 434 (484)
T PLN02569 357 ASAIQIG-DPVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCPHTGVALAALKKLRASGVIGPTDRTVVVS 434 (484)
T ss_pred chhhccC-CCccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECchHHHHHHHHHHHHHcCCCCCCCcEEEEe
Confidence 3455554 4666554333 55 699999999999999 89999999999999999999998864 23578999999
Q ss_pred CCCCccccCh
Q 037531 77 PSSGERYLSS 86 (106)
Q Consensus 77 ~D~g~kY~s~ 86 (106)
+|+|.||...
T Consensus 435 Tg~GlK~~~~ 444 (484)
T PLN02569 435 TAHGLKFTQS 444 (484)
T ss_pred CCCcccChhH
Confidence 9999999875
No 31
>PRK08197 threonine synthase; Validated
Probab=99.36 E-value=2.3e-12 Score=100.52 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=60.2
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhC-CCCCEEEEEeCCCCccccCh
Q 037531 20 ILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE-NAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 20 ~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~-~~~~~Vv~i~~D~g~kY~s~ 86 (106)
..+.++.|+|+|++++++.|++++||++|||||+++++++++.++.. .++++||+++||+|.||+++
T Consensus 319 ~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k~~~~ 386 (394)
T PRK08197 319 TGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLKYPDT 386 (394)
T ss_pred hCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcCchhh
Confidence 34567999999999999999999999999999999999999988642 35789999999999999887
No 32
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=99.34 E-value=2.2e-12 Score=105.71 Aligned_cols=67 Identities=22% Similarity=0.292 Sum_probs=61.3
Q ss_pred CccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 19 SILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 19 ~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
...++++.|+|+||+++++.|+++|||++|+|||+++++++++++++. ++++||+++||+|+||+++
T Consensus 534 ~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~~~~~-~~~~Vvv~lsG~G~kd~~~ 600 (610)
T PRK13803 534 TGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRKKFK-KKDIVIVNLSGRGDKDIPT 600 (610)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhchhcC-CCCeEEEEeCCCCcCCHHH
Confidence 334589999999999999999999999999999999999999987764 5789999999999999997
No 33
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=99.34 E-value=3.3e-12 Score=96.79 Aligned_cols=64 Identities=27% Similarity=0.401 Sum_probs=57.8
Q ss_pred CccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhC-CCCCEEEEEeCCCCcc
Q 037531 19 SILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE-NAGKLIVVIFPSSGER 82 (106)
Q Consensus 19 ~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~-~~~~~Vv~i~~D~g~k 82 (106)
+..|+++.|+|+|++++++.|++++|+++|||||++++++++++++.. .++++||+++||+|.|
T Consensus 259 ~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~v~tg~g~~ 323 (324)
T cd01563 259 ESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGHGLK 323 (324)
T ss_pred HhCCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCccC
Confidence 456899999999999999999999999999999999999999987631 3578999999999987
No 34
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=99.32 E-value=4e-12 Score=96.68 Aligned_cols=82 Identities=21% Similarity=0.139 Sum_probs=64.7
Q ss_pred cccCCCCCCCcC-cc--cCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHH------hCCCCCEEEE
Q 037531 4 IQGIGIGFVPSV-LD--VSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKR------AENAGKLIVV 74 (106)
Q Consensus 4 i~GiG~~~~p~~-~~--~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~------~~~~~~~Vv~ 74 (106)
..|+|.+++++. ++ +..+|+++.|+|+|+++++++|++++|+++|+|||++++++++..+. ...++++||+
T Consensus 217 a~glg~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~ 296 (316)
T cd06448 217 ATSLGAKTVSSQALEYAQEHNIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVV 296 (316)
T ss_pred hhccCCCCcCHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHhCcchhhhcccccCCCCeEEE
Confidence 348887777653 44 35689999999999999999999999999999999999999863211 1136889999
Q ss_pred EeCCCCccccC
Q 037531 75 IFPSSGERYLS 85 (106)
Q Consensus 75 i~~D~g~kY~s 85 (106)
++||+....+.
T Consensus 297 iltg~n~~~~~ 307 (316)
T cd06448 297 VVCGGSNITLE 307 (316)
T ss_pred EECCCCCCCHH
Confidence 99998764333
No 35
>PRK08329 threonine synthase; Validated
Probab=99.28 E-value=1.4e-11 Score=94.82 Aligned_cols=81 Identities=23% Similarity=0.232 Sum_probs=65.0
Q ss_pred CcccCCCCCCCcCcc-----cCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhC-CCCCEEEEEe
Q 037531 3 KIQGIGIGFVPSVLD-----VSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE-NAGKLIVVIF 76 (106)
Q Consensus 3 ~i~GiG~~~~p~~~~-----~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~-~~~~~Vv~i~ 76 (106)
..+|++.+..|.... .+..+.++.|+|+|++++++.|++ +||++|||||+++++++++.++.. .++++||+++
T Consensus 261 ~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l~~~g~i~~~~~Vv~~~ 339 (347)
T PRK08329 261 LADGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWKLLEEGLIEGGSKVLLPL 339 (347)
T ss_pred eeeeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHHHHHHHHHHHHhCCCCCCCeEEEEe
Confidence 345666555443321 244566899999999999999986 899999999999999999998742 3678999999
Q ss_pred CCCCcccc
Q 037531 77 PSSGERYL 84 (106)
Q Consensus 77 ~D~g~kY~ 84 (106)
|++|.|++
T Consensus 340 TG~glK~~ 347 (347)
T PRK08329 340 SGSGLKNL 347 (347)
T ss_pred CCCCccCC
Confidence 99999985
No 36
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=99.27 E-value=1.9e-11 Score=92.70 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=59.5
Q ss_pred CccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhC-CCCCEEEEEeCCCCcccc
Q 037531 19 SILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE-NAGKLIVVIFPSSGERYL 84 (106)
Q Consensus 19 ~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~-~~~~~Vv~i~~D~g~kY~ 84 (106)
..+|+++.|+|+|++++++.|++++|+++|||||++++++++++++.. .++++||+++|++|.|+.
T Consensus 261 ~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~i~tG~~~k~~ 327 (328)
T TIGR00260 261 RSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADPAERVVCALTGNGLKDP 327 (328)
T ss_pred hcCCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCCCCCcEEEEecCCCCCCC
Confidence 568999999999999999999999999999999999999999987531 256899999999999975
No 37
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=99.25 E-value=1.8e-11 Score=96.06 Aligned_cols=80 Identities=20% Similarity=0.252 Sum_probs=64.8
Q ss_pred cccCCCCCCCcC---cccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Q 037531 4 IQGIGIGFVPSV---LDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSG 80 (106)
Q Consensus 4 i~GiG~~~~p~~---~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g 80 (106)
.+|++...++.. +.++.+|+++.|+|+|++++++.|++++|+++|||||+++++++++.++. ++++||+|+|+ |
T Consensus 228 a~g~~v~~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~~--~~~~Vv~ilsG-g 304 (409)
T TIGR02079 228 VDGAAVKRVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERLGEEI--KGKTVVCVVSG-G 304 (409)
T ss_pred eccccCCCCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhhc--CCCeEEEEECC-C
Confidence 456665554432 23678999999999999999999999999999999999999999887653 57899999997 5
Q ss_pred ccccCh
Q 037531 81 ERYLSS 86 (106)
Q Consensus 81 ~kY~s~ 86 (106)
.-+++.
T Consensus 305 n~d~~~ 310 (409)
T TIGR02079 305 NNDIER 310 (409)
T ss_pred CCCHHH
Confidence 555554
No 38
>PRK08638 threonine dehydratase; Validated
Probab=99.25 E-value=2e-11 Score=93.62 Aligned_cols=80 Identities=21% Similarity=0.187 Sum_probs=61.8
Q ss_pred CCCcCcc----cCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 11 FVPSVLD----VSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 11 ~~p~~~~----~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
..|.+++ ++.+|+++.|+|+|+++++++|++++|+++|+|+|+++++++........++++||+|+|+ |..++++
T Consensus 241 ~~p~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~v~~G-gn~~~~~ 319 (333)
T PRK08638 241 SRPGNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVAIISG-GNVDLSR 319 (333)
T ss_pred CCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhCCcccccCCCcEEEEECC-CCCCHHH
Confidence 4677666 3789999999999999999999999999999987777766554221111257899999996 8888886
Q ss_pred hhcHHHH
Q 037531 87 EMFDAER 93 (106)
Q Consensus 87 ~~~~~~~ 93 (106)
+.+++
T Consensus 320 --~~~~~ 324 (333)
T PRK08638 320 --VSQIT 324 (333)
T ss_pred --HHHHH
Confidence 45544
No 39
>PRK06110 hypothetical protein; Provisional
Probab=99.23 E-value=2.9e-11 Score=91.98 Aligned_cols=71 Identities=24% Similarity=0.230 Sum_probs=62.2
Q ss_pred cCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccChhhcHHHH
Q 037531 18 VSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSSEMFDAER 93 (106)
Q Consensus 18 ~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~~~~~~~~ 93 (106)
++.+|+++.|+|+|++++++.|++++|+++|+|||+++++++++.+.. ++++||+|+|+ |..+++. +.+++
T Consensus 246 ~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~~~~--~~~~Vv~i~tG-gn~d~~~--~~~~~ 316 (322)
T PRK06110 246 RAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQERERL--AGKRVGLVLSG-GNIDRAV--FARVL 316 (322)
T ss_pred HHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhChhhh--CCCcEEEEECC-CCCCHHH--HHHHH
Confidence 478999999999999999999999999999999999999999987764 57899999999 7777765 55544
No 40
>PRK07048 serine/threonine dehydratase; Validated
Probab=99.23 E-value=1e-11 Score=94.33 Aligned_cols=66 Identities=23% Similarity=0.346 Sum_probs=58.5
Q ss_pred cCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 18 VSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 18 ~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
.+.+|+++.|+|+|++++++.|++++|+++|||||+++++++++.++. ++++||+|+|+ |...++.
T Consensus 249 ~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~~~~~--~~~~vv~i~tG-Gn~~~~~ 314 (321)
T PRK07048 249 RRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRGKVPL--KGKRVGVIISG-GNVDLAR 314 (321)
T ss_pred HHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhCchhc--CCCeEEEEeCC-CCCCHHH
Confidence 478999999999999999999999999999999999999999987663 57899999997 6666554
No 41
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=99.23 E-value=2.5e-11 Score=90.89 Aligned_cols=64 Identities=25% Similarity=0.284 Sum_probs=58.3
Q ss_pred cccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 16 LDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 16 ~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
++.+.+|+++.|+|+|++++++.|++++|+++|||||+++++++++.++. ++++||+++||+..
T Consensus 240 ~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~~~~~--~~~~vv~i~tGG~~ 303 (304)
T cd01562 240 IIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGKLDL--KGKKVVVVLSGGNI 303 (304)
T ss_pred HHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhCcccc--CCCeEEEEecCCCC
Confidence 45678999999999999999999999999999999999999999998775 57899999999753
No 42
>PRK08246 threonine dehydratase; Provisional
Probab=99.22 E-value=2.2e-11 Score=92.39 Aligned_cols=65 Identities=20% Similarity=0.161 Sum_probs=56.5
Q ss_pred cccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 16 LDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 16 ~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
+.++.+|+++.|+|+|++++++.|++++|+++|+|||++++++++..++. .++++||+|+|+++-
T Consensus 240 ~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~~~~~-~~~~~vv~i~~g~n~ 304 (310)
T PRK08246 240 LARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATALAALLSGAYVP-APGERVAVVLCGANT 304 (310)
T ss_pred HHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhCCccc-cCCCeEEEEECCCCC
Confidence 66788999999999999999999999999999999999999987654432 257899999999754
No 43
>PRK06260 threonine synthase; Validated
Probab=99.21 E-value=5.2e-11 Score=92.99 Aligned_cols=66 Identities=24% Similarity=0.255 Sum_probs=59.3
Q ss_pred cCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhC-CCCCEEEEEeCCCCccccCh
Q 037531 21 LDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE-NAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 21 vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~-~~~~~Vv~i~~D~g~kY~s~ 86 (106)
.++++.|+|+|++++++.|++++|+++|||||++++++++++++.. .++++||+++|++|.|+...
T Consensus 307 ~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~i~tG~glK~~~~ 373 (397)
T PRK06260 307 GGTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKLVEEGVIDKDERVVCITTGHLLKDPDA 373 (397)
T ss_pred CCEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccCchHH
Confidence 3679999999999999999999999999999999999999987642 35789999999999998665
No 44
>PLN02970 serine racemase
Probab=99.21 E-value=2.1e-11 Score=93.06 Aligned_cols=70 Identities=23% Similarity=0.273 Sum_probs=57.0
Q ss_pred cccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHH-hC--CCCCEEEEEeCCCCccccCh
Q 037531 16 LDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKR-AE--NAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 16 ~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~-~~--~~~~~Vv~i~~D~g~kY~s~ 86 (106)
..++.+|+++.|+|+|++++++.|++++|+++|||||++++++++...+ .. ..+++||+++|+ |...++.
T Consensus 249 ~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~v~~G-gn~~~~~ 321 (328)
T PLN02970 249 VVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGIVLSG-GNVDLGV 321 (328)
T ss_pred HHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCcccccccccCCCeEEEEECC-CCCCHHH
Confidence 3357889999999999999999999999999999999999998865432 11 124789999999 5665554
No 45
>PRK07591 threonine synthase; Validated
Probab=99.18 E-value=7.5e-11 Score=92.92 Aligned_cols=67 Identities=24% Similarity=0.350 Sum_probs=60.0
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhC-CCCCEEEEEeCCCCccccCh
Q 037531 20 ILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE-NAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 20 ~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~-~~~~~Vv~i~~D~g~kY~s~ 86 (106)
..+.++.|+|+|++++++.|++++|+++|||||++++++++++++.. .++++||+++||+|.||+..
T Consensus 329 ~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd~~~ 396 (421)
T PRK07591 329 TGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKTLEA 396 (421)
T ss_pred hCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCCHHH
Confidence 34579999999999999999999999999999999999999988542 36789999999999999875
No 46
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=99.16 E-value=5.2e-11 Score=88.55 Aligned_cols=76 Identities=41% Similarity=0.651 Sum_probs=59.8
Q ss_pred CcccCCCCC-CCcCccc----CccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhC---CCCCEEEE
Q 037531 3 KIQGIGIGF-VPSVLDV----SILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE---NAGKLIVV 74 (106)
Q Consensus 3 ~i~GiG~~~-~p~~~~~----~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~---~~~~~Vv~ 74 (106)
.++|++.+. .+..... +.+++++.|+|+|++++++.|++++|++++|++|++++++++++++.. .++++||+
T Consensus 223 ~~~gl~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~ 302 (306)
T PF00291_consen 223 TIAGLGVPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVV 302 (306)
T ss_dssp SSTGGTSSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEE
T ss_pred eeecccCCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEE
Confidence 456887766 4555443 344566899999999999999999999999999999999999998763 26899999
Q ss_pred EeCC
Q 037531 75 IFPS 78 (106)
Q Consensus 75 i~~D 78 (106)
|+||
T Consensus 303 v~tG 306 (306)
T PF00291_consen 303 VLTG 306 (306)
T ss_dssp EE-B
T ss_pred EcCC
Confidence 9986
No 47
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=99.15 E-value=7.7e-11 Score=92.34 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=58.4
Q ss_pred CcccCccCeEEEeCHHHHHHHHHHHHH----HhCceeeechHHHHHHHHHHHHH---------h-CCCCCEEEEEeCCCC
Q 037531 15 VLDVSILDEVVRVTSNEAIQTAKLLGA----KEGLLVGISSGAAAAAAIKIAKR---------A-ENAGKLIVVIFPSSG 80 (106)
Q Consensus 15 ~~~~~~vD~~i~V~d~ea~~~~r~l~~----~eGi~~G~Ssga~l~aa~~~a~~---------~-~~~~~~Vv~i~~D~g 80 (106)
.+.++.+|+++.|+|+|++++++.|++ ++|+++|||||+++++++++.++ . ..++++||+|+| +|
T Consensus 304 ~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~ilt-gG 382 (399)
T PRK08206 304 EILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAALMTDPDYQELREKLGLDEDSRVLLIST-EG 382 (399)
T ss_pred HHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHHHHhcchhhHHHHhcCCCCCCEEEEEEC-CC
Confidence 344678999999999999999999996 78999999999999999987522 1 124789999999 57
Q ss_pred ccccCh
Q 037531 81 ERYLSS 86 (106)
Q Consensus 81 ~kY~s~ 86 (106)
.+..++
T Consensus 383 ~~d~~~ 388 (399)
T PRK08206 383 DTDPDR 388 (399)
T ss_pred CCCHHH
Confidence 666654
No 48
>PRK06382 threonine dehydratase; Provisional
Probab=99.14 E-value=6.9e-11 Score=92.59 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=61.9
Q ss_pred cccCCCCC---CCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Q 037531 4 IQGIGIGF---VPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSG 80 (106)
Q Consensus 4 i~GiG~~~---~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g 80 (106)
.+|++.+. .+..+.++.+|+++.|+|+|++++++.|++++|+++|||||++++++++. +. ..++++||+|+|+ |
T Consensus 233 a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~-~~-~~~~~~Vv~i~sG-G 309 (406)
T PRK06382 233 CDGISVKYPGDLTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEG-KV-DVKGKKVAIVVSG-G 309 (406)
T ss_pred cccccCCCccHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhc-cc-cCCCCEEEEEeCC-C
Confidence 45666543 23334468899999999999999999999999999999998888766432 21 1246799999997 5
Q ss_pred c---cccChhhc
Q 037531 81 E---RYLSSEMF 89 (106)
Q Consensus 81 ~---kY~s~~~~ 89 (106)
. +|+++.+.
T Consensus 310 n~d~~~~~~~~~ 321 (406)
T PRK06382 310 NINPLLMSKIIY 321 (406)
T ss_pred CCCHHHHHHHHH
Confidence 5 46666433
No 49
>PRK08813 threonine dehydratase; Provisional
Probab=99.13 E-value=1.1e-10 Score=90.20 Aligned_cols=72 Identities=26% Similarity=0.342 Sum_probs=59.4
Q ss_pred cccCCC---CCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Q 037531 4 IQGIGI---GFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSG 80 (106)
Q Consensus 4 i~GiG~---~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g 80 (106)
.+|++. +..|..+..+.+|+++.|+|+|++++++.|++++|+++|+|||+++++++++ ++++|++|+|++.
T Consensus 236 adgl~~~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~~------~~~~v~~vlsGgN 309 (349)
T PRK08813 236 ADGVKVKIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRRV------SGKRKCAVVSGGN 309 (349)
T ss_pred ecccccCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHHh------CCCCEEEEECCCC
Confidence 345553 3455556678899999999999999999999999999999999999998652 3678999999975
Q ss_pred c
Q 037531 81 E 81 (106)
Q Consensus 81 ~ 81 (106)
.
T Consensus 310 ~ 310 (349)
T PRK08813 310 I 310 (349)
T ss_pred C
Confidence 5
No 50
>PRK08639 threonine dehydratase; Validated
Probab=99.12 E-value=1.7e-10 Score=90.85 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=64.9
Q ss_pred cccCCCCCCCc---CcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Q 037531 4 IQGIGIGFVPS---VLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSG 80 (106)
Q Consensus 4 i~GiG~~~~p~---~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g 80 (106)
.+|++...++. .+.++.+|+++.|+|+|++++++.|++++|+++|||||++++++++++++. ++++||+++|+ |
T Consensus 239 a~gi~v~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~~--~~~~vv~v~sG-g 315 (420)
T PRK08639 239 VDGAAVARVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELYKDEI--KGKTVVCVISG-G 315 (420)
T ss_pred ecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhhc--CCCeEEEEeCC-C
Confidence 45666544432 234678999999999999999999999999999999999999998877654 57899999997 5
Q ss_pred ccccCh
Q 037531 81 ERYLSS 86 (106)
Q Consensus 81 ~kY~s~ 86 (106)
..++++
T Consensus 316 n~d~~~ 321 (420)
T PRK08639 316 NNDIER 321 (420)
T ss_pred CCCHHH
Confidence 666654
No 51
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=99.11 E-value=1.9e-10 Score=90.22 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=61.2
Q ss_pred CccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhC-CCCCEEEEEeCCCCccccCh
Q 037531 19 SILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE-NAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 19 ~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~-~~~~~Vv~i~~D~g~kY~s~ 86 (106)
+..++++.|+|+|++++++.|++++|++++|+||+++++++++.++.. .++++||+++|++|.|++-.
T Consensus 317 ~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~~~~Vv~vlTG~glK~~~~ 385 (398)
T TIGR03844 317 ATGGQMYGVSNKEAVSAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGPDDDILLNITGGGYKRLRE 385 (398)
T ss_pred HhCCEEEEECHHHHHHHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCCCCeEEEEECCcchhhHHh
Confidence 567899999999999999999999999999999999999999987642 36789999999999998764
No 52
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=99.11 E-value=7.3e-11 Score=89.81 Aligned_cols=69 Identities=20% Similarity=0.115 Sum_probs=58.7
Q ss_pred CCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 10 GFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 10 ~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
+.+|..+.++.+|+++.|+|+|++++++.|++++|++++|||++++++.++.. . ..+++||+++|+++.
T Consensus 238 ~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~~~--~-~~~~~vvvvltG~n~ 306 (317)
T TIGR02991 238 NRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLAGK--I-KNPGPCAVIVSGRNI 306 (317)
T ss_pred CHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHcCc--c-ccCCcEEEEeCCCCC
Confidence 45667777889999999999999999999999999999999999998887422 2 136789999999875
No 53
>PRK08198 threonine dehydratase; Provisional
Probab=99.10 E-value=1.5e-10 Score=90.39 Aligned_cols=68 Identities=22% Similarity=0.259 Sum_probs=58.2
Q ss_pred cccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 16 LDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 16 ~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
+.++.+|+++.|+|+|++.+++.|++++|+++|||||+++++++++.+. .++++||+++|+ |...+..
T Consensus 245 ~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~~~~--~~~~~vv~vl~g-gn~~~~~ 312 (404)
T PRK08198 245 IIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGKLD--VKGKKVVAVLSG-GNIDVLL 312 (404)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhchhh--cCCCeEEEEECC-CCCCHHH
Confidence 4468899999999999999999999999999999999999999887643 257899999998 5555443
No 54
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=99.08 E-value=5.1e-10 Score=81.54 Aligned_cols=56 Identities=48% Similarity=0.670 Sum_probs=52.3
Q ss_pred eEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Q 037531 23 EVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSS 79 (106)
Q Consensus 23 ~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~ 79 (106)
+++.|+|+|+++++++|++++|+++|||||++++++.+++++. .++++||+++||+
T Consensus 189 ~~~~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~~-~~~~~vv~v~tg~ 244 (244)
T cd00640 189 EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKL-GKGKTVVVILTGG 244 (244)
T ss_pred eEEEECHHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence 7899999999999999999999999999999999999999886 3678999999985
No 55
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=99.06 E-value=1.9e-10 Score=89.03 Aligned_cols=67 Identities=25% Similarity=0.294 Sum_probs=56.6
Q ss_pred cccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccC
Q 037531 16 LDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLS 85 (106)
Q Consensus 16 ~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s 85 (106)
+..+.+|+++.|+|+|+.++++.|++++|+++|||||++++++++.... .++++||+++|+ |....+
T Consensus 223 ~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~~~~--~~~~~vv~i~sG-Gn~d~d 289 (380)
T TIGR01127 223 IIKEYVDDVVTVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKVD--VKGKKIAVVLSG-GNIDLN 289 (380)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhCccc--cCCCeEEEEeCC-CCCCHH
Confidence 4457899999999999999999999999999999999999999875433 257899999998 554433
No 56
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=99.04 E-value=6.4e-10 Score=89.47 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=59.0
Q ss_pred ccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCcc
Q 037531 17 DVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGER 82 (106)
Q Consensus 17 ~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~k 82 (106)
.++.+|+++.|+|+|+.++++.|++++|+++|||||++++++++++++...++++||+|+|+++..
T Consensus 242 ~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~i~sG~n~~ 307 (499)
T TIGR01124 242 CQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGIRGQTLVAILSGANMN 307 (499)
T ss_pred HHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEEEECCCCCC
Confidence 347899999999999999999999999999999999999999999876533578999999997754
No 57
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=99.03 E-value=5.4e-10 Score=84.34 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=61.0
Q ss_pred CCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeee-chHHHHHHHHHHHHHhC-CCCCEEEEEeCCC
Q 037531 10 GFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGI-SSGAAAAAAIKIAKRAE-NAGKLIVVIFPSS 79 (106)
Q Consensus 10 ~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~-Ssga~l~aa~~~a~~~~-~~~~~Vv~i~~D~ 79 (106)
+..+..++.+.+|+.+.|+|+|+++++++|++++|+++|| |||++++++++++++.. +++++||++.+++
T Consensus 236 ~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~TGG 307 (307)
T cd06449 236 KEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIHLGG 307 (307)
T ss_pred CcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence 3456678888999999999999999999999999999999 79999999999998641 3578999998874
No 58
>PRK02991 D-serine dehydratase; Provisional
Probab=99.03 E-value=6.8e-10 Score=88.20 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=61.4
Q ss_pred cCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHh------C-C---CCCEEEEEeCCCCccccChh
Q 037531 18 VSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRA------E-N---AGKLIVVIFPSSGERYLSSE 87 (106)
Q Consensus 18 ~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~------~-~---~~~~Vv~i~~D~g~kY~s~~ 87 (106)
++.+|+++.|+|+|++++++.|++++|+++|+|||++++++++++++. . . ++++||++.|++...+...
T Consensus 351 ~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~~gg~~~~~~~- 429 (441)
T PRK02991 351 ERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWATGGSMVPEEE- 429 (441)
T ss_pred HHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEECCCCCCCHHH-
Confidence 478999999999999999999999999999999999999998776521 0 1 4689999999998886653
Q ss_pred hcHHHH
Q 037531 88 MFDAER 93 (106)
Q Consensus 88 ~~~~~~ 93 (106)
..++.
T Consensus 430 -~~~~~ 434 (441)
T PRK02991 430 -MEQYL 434 (441)
T ss_pred -HHHHH
Confidence 44443
No 59
>PRK07476 eutB threonine dehydratase; Provisional
Probab=99.03 E-value=4.5e-10 Score=85.47 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=57.3
Q ss_pred CCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 11 FVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 11 ~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
..|..+.+..+|+++.|+|+|++++++.|++++|+++|+|+++++++.++. .....+++||+++|+++.
T Consensus 239 ~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~~~--~~~~~~~~Vvvi~tGg~~ 307 (322)
T PRK07476 239 RYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALLAG--KIAARDGPIVVVVSGANI 307 (322)
T ss_pred HHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHHhC--CcccCCCcEEEEECCCCC
Confidence 345556678999999999999999999999999999999999999988732 222234799999998776
No 60
>PRK09224 threonine dehydratase; Reviewed
Probab=99.02 E-value=8.5e-10 Score=88.80 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=58.6
Q ss_pred cCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCcc
Q 037531 18 VSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGER 82 (106)
Q Consensus 18 ~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~k 82 (106)
++.+|+++.|+|+|+.++++.|++++|++++||||+++++++++.++...++++||+|+|+++-.
T Consensus 246 ~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~g~~vv~i~sG~n~~ 310 (504)
T PRK09224 246 QEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIEGETLVAILSGANMN 310 (504)
T ss_pred HhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCCCCeEEEEECCCCCC
Confidence 68899999999999999999999999999999999999999998876533478999999997754
No 61
>PRK06381 threonine synthase; Validated
Probab=98.99 E-value=1.5e-09 Score=82.18 Aligned_cols=59 Identities=24% Similarity=0.248 Sum_probs=52.8
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Q 037531 20 ILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSS 79 (106)
Q Consensus 20 ~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~ 79 (106)
..++++.|+|+|++++++.|+++|||++|||||++++++++++++.. .+++||+++|++
T Consensus 259 ~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~-~~~~vv~i~tGg 317 (319)
T PRK06381 259 SHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNG-VNDNVVAVITGR 317 (319)
T ss_pred cCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCC-CCCcEEEEecCC
Confidence 34489999999999999999999999999999999999999998763 247999999985
No 62
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=98.98 E-value=6.5e-10 Score=84.89 Aligned_cols=74 Identities=26% Similarity=0.448 Sum_probs=64.2
Q ss_pred CcccCCCCC-CCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeee-chHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Q 037531 3 KIQGIGIGF-VPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGI-SSGAAAAAAIKIAKRAENAGKLIVVIFPSS 79 (106)
Q Consensus 3 ~i~GiG~~~-~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~-Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~ 79 (106)
.++|++.++ .|.++|... |++..++ +|+++++++++++|||++|| |||.+++++++++++.. .+.+||+|.+++
T Consensus 239 ~~~g~~~~~~~~~~~d~~~-~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~~-~~~~iv~ihtGG 314 (329)
T PRK14045 239 ELLGVKVKVQEPELYDYSF-GEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKKGE-LGEKILFIHTGG 314 (329)
T ss_pred HHhCCCCCccceEeccccc-CCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHcCC-CCCCEEEEECCC
Confidence 466777766 777777776 9988998 69999999999999999998 99999999999998763 367999999986
No 63
>PRK06450 threonine synthase; Validated
Probab=98.98 E-value=1.4e-09 Score=83.60 Aligned_cols=56 Identities=34% Similarity=0.373 Sum_probs=50.6
Q ss_pred CeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCcccc
Q 037531 22 DEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYL 84 (106)
Q Consensus 22 D~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~ 84 (106)
++++.|+|+|+++++++|++ +|+++|||||+++++++++ ++++||+++|++|.|-+
T Consensus 283 g~~v~V~d~ei~~a~~~La~-~Gi~vepssaaalAa~~~l------~~~~vv~vltG~glK~~ 338 (338)
T PRK06450 283 GECIVVSDNEIVEAWKELAK-KGLLVEYSSATVYAAYKKY------SVNDSVLVLTGSGLKVL 338 (338)
T ss_pred CcEEEECHHHHHHHHHHHHH-cCCEEChhHHHHHHHHHHC------CCCCEEEEeCCCCccCC
Confidence 79999999999999999987 6999999999999999885 24689999999999853
No 64
>PRK08526 threonine dehydratase; Provisional
Probab=98.97 E-value=1.1e-09 Score=86.13 Aligned_cols=72 Identities=24% Similarity=0.295 Sum_probs=58.6
Q ss_pred CcCcc--cCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 13 PSVLD--VSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 13 p~~~~--~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
|..++ ++.+|+++.|+|+|+.++++.|++++|+++|||++++++++++..... .++++||+++|+ |...+++
T Consensus 238 ~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~~~~~~-~~~~~Vv~ilsG-Gnid~~~ 311 (403)
T PRK08526 238 PINLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKIDL-KKGKKIGVVLSG-GNIDVQM 311 (403)
T ss_pred HHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhCcccc-ccCCeEEEEECC-CCCCHHH
Confidence 44444 478999999999999999999999999999999999999987543332 257899999999 5655554
No 65
>PRK12483 threonine dehydratase; Reviewed
Probab=98.95 E-value=1.7e-09 Score=87.52 Aligned_cols=66 Identities=24% Similarity=0.214 Sum_probs=58.5
Q ss_pred cccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 16 LDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 16 ~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
+.++.+|+++.|+|+|+.++++.|++++|+++|||||+++++++++.++...++++||+|+|+++-
T Consensus 261 ~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~~g~~VV~IlsGgNi 326 (521)
T PRK12483 261 LCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGIEGQTLVAIDSGANV 326 (521)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Confidence 336789999999999999999999999999999999999999999876653357899999999764
No 66
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=98.93 E-value=2e-09 Score=81.28 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=54.0
Q ss_pred cCccCeEEEeCHHHHHHHHHHHHHHhCceeee-chHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Q 037531 18 VSILDEVVRVTSNEAIQTAKLLGAKEGLLVGI-SSGAAAAAAIKIAKRAENAGKLIVVIFPSS 79 (106)
Q Consensus 18 ~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~-Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~ 79 (106)
.+..++.+.|+|+|+++++++|++++|+++|| |||++++++++++++...++++||+++|+.
T Consensus 238 ~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~i~tGG 300 (311)
T TIGR01275 238 DDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDLIRKGELGEKGILFIHTGG 300 (311)
T ss_pred CCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHHHHhCCCCCCCEEEEECCC
Confidence 45678889999999999999999999999999 599999999998876532467899999996
No 67
>PRK05638 threonine synthase; Validated
Probab=98.93 E-value=4.6e-09 Score=83.13 Aligned_cols=62 Identities=27% Similarity=0.427 Sum_probs=51.5
Q ss_pred CeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHh-CCCCCEEEEEeCCCCcccc
Q 037531 22 DEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRA-ENAGKLIVVIFPSSGERYL 84 (106)
Q Consensus 22 D~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~-~~~~~~Vv~i~~D~g~kY~ 84 (106)
+.++.|+|+++.++++.++ ++||++|||||++++++++++++. ..++++||+++||+|.|+.
T Consensus 297 g~~~~v~d~~i~~a~~~l~-~eGi~~epssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~ 359 (442)
T PRK05638 297 GTAVVVNEEEIMAGEKLLA-KEGIFAELSSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGY 359 (442)
T ss_pred CEEEEECHHHHHHHHHHHH-hcCceecchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Confidence 4567788877777666665 589999999999999999998864 2367899999999999995
No 68
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=98.91 E-value=5.2e-09 Score=83.01 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=51.2
Q ss_pred cccCCCCCCCcCcc---cCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHH
Q 037531 4 IQGIGIGFVPSVLD---VSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 4 i~GiG~~~~p~~~~---~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~ 64 (106)
.+||+.+..+.+.. +..+|+++.|+|+|++++++.|++++|+++|||||++++++.++.+.
T Consensus 329 AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~laa~~~l~~~ 392 (431)
T TIGR02035 329 ADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGMEGPVRLLKY 392 (431)
T ss_pred eccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHHHHHHHHHhh
Confidence 35666555554433 35899999999999999999999999999999999999999988875
No 69
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=98.90 E-value=3.4e-09 Score=80.87 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=56.0
Q ss_pred cccCccCeEEEeCHHHHHHHHHHHHHHhCceeeec-hHHHHHHHHHHHHHhC-CCCCEEEEEeCCC
Q 037531 16 LDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGIS-SGAAAAAAIKIAKRAE-NAGKLIVVIFPSS 79 (106)
Q Consensus 16 ~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~S-sga~l~aa~~~a~~~~-~~~~~Vv~i~~D~ 79 (106)
+..+.+|+.+.|+|+|+++++++|++++||++||+ ||+++++++++.++.. .++++||+|.|++
T Consensus 253 ~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i~tGG 318 (331)
T PRK03910 253 LWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFIHTGG 318 (331)
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEEEECCC
Confidence 56688999999999999999999999999999996 9999999999887542 2467999998886
No 70
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=98.90 E-value=1.2e-09 Score=86.00 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=45.7
Q ss_pred cCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHh
Q 037531 18 VSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRA 65 (106)
Q Consensus 18 ~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~ 65 (106)
++.+|+++.|+|+|++++++.|++++|+++|+|||++++++++++++.
T Consensus 328 ~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lAAl~~~~~~~ 375 (404)
T cd06447 328 EPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFTGPAQVLSEA 375 (404)
T ss_pred HHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999999999999999999999999875
No 71
>PLN02550 threonine dehydratase
Probab=98.87 E-value=7.2e-09 Score=84.93 Aligned_cols=65 Identities=17% Similarity=0.107 Sum_probs=58.3
Q ss_pred cCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCcc
Q 037531 18 VSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGER 82 (106)
Q Consensus 18 ~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~k 82 (106)
++.+|+++.|+|+|+.++++.|++++|++++||||++++|++++.++...++++||+++|+++..
T Consensus 335 ~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~~g~~Vv~vlsGgNid 399 (591)
T PLN02550 335 RELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKDENVVAITSGANMN 399 (591)
T ss_pred HhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCCC
Confidence 67899999999999999999999999999999999999999998875433578999999997653
No 72
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=98.84 E-value=7.6e-09 Score=79.14 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=57.0
Q ss_pred cccCccCeEEEeCHHHHHHHHHHHHHHhCceeeec-hHHHHHHHHHHHHHhC-CCCCEEEEEeCCC
Q 037531 16 LDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGIS-SGAAAAAAIKIAKRAE-NAGKLIVVIFPSS 79 (106)
Q Consensus 16 ~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~S-sga~l~aa~~~a~~~~-~~~~~Vv~i~~D~ 79 (106)
++.+.+|+.+.|+|+|++++++++++++|+++||+ ||.+++++++++++.. +++.+||++=+++
T Consensus 259 ~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~~htgg 324 (337)
T PRK12390 259 LDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLYAHLGG 324 (337)
T ss_pred EecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence 56688999999999999999999999999999997 9999999999998642 3577999998886
No 73
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=98.78 E-value=2.4e-08 Score=78.83 Aligned_cols=65 Identities=25% Similarity=0.460 Sum_probs=59.1
Q ss_pred CeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 22 DEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 22 D~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
.....|||+|++++.+.|++++|++++|+|++++++++++.++...++.++|++++++|.|+.++
T Consensus 314 g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~ 378 (411)
T COG0498 314 GLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDT 378 (411)
T ss_pred CceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhH
Confidence 44899999999999999999999999999999999999999863346789999999999998887
No 74
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=98.76 E-value=1.8e-08 Score=77.52 Aligned_cols=65 Identities=29% Similarity=0.436 Sum_probs=59.9
Q ss_pred cCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 21 LDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 21 vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
--+.+.|+|+||+++.+.|+|.|||++...|+++++.+.++++++. +++.||+.++++|+|.+.+
T Consensus 321 Ra~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~~~~-~~~~ivvnlSGRGDKDv~t 385 (396)
T COG0133 321 RAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPKLP-KDEIIVVNLSGRGDKDVFT 385 (396)
T ss_pred ceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhchhcC-CCcEEEEEccCCCcccHHH
Confidence 3467889999999999999999999999999999999999999885 5669999999999999888
No 75
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=98.66 E-value=3.9e-08 Score=76.12 Aligned_cols=71 Identities=20% Similarity=0.203 Sum_probs=61.4
Q ss_pred CCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 10 GFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 10 ~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
|..++.+-++++|+++.|+|+|+.++|+.|++++++.++||++++++++++...+. .++++|++|+|+.-.
T Consensus 245 g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~-~~g~~v~~ilSGgN~ 315 (347)
T COG1171 245 GDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEP-LQGKTVVVILSGGNI 315 (347)
T ss_pred CHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhhhhhh-cCCCeEEEEecCCCC
Confidence 34556667899999999999999999999999999999999999999999888763 357779999998643
No 76
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=98.66 E-value=6.2e-08 Score=74.18 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=56.9
Q ss_pred cCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeec-hHHHHHHHHHHHHHhC-CCCCEEEEEeCCCCcc
Q 037531 14 SVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGIS-SGAAAAAAIKIAKRAE-NAGKLIVVIFPSSGER 82 (106)
Q Consensus 14 ~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~S-sga~l~aa~~~a~~~~-~~~~~Vv~i~~D~g~k 82 (106)
..++...+|+.+.|+|+|++++++.|++++|++++|+ ||.+++++++++++.. .++++||+ +.++|..
T Consensus 256 ~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv~-~htGG~~ 325 (337)
T TIGR01274 256 VVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVLY-AHLGGAP 325 (337)
T ss_pred eEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEEE-EeCCChh
Confidence 3567788899999999999999999999999999995 9999999999998652 35678884 4555665
No 77
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=98.61 E-value=8.3e-08 Score=75.35 Aligned_cols=62 Identities=10% Similarity=0.221 Sum_probs=49.6
Q ss_pred cCccCeEEEeCHHHHHHHHHHHHH----HhCceeeechHHHHHHH---HH------HHHHhC-CCCCEEEEEeCCC
Q 037531 18 VSILDEVVRVTSNEAIQTAKLLGA----KEGLLVGISSGAAAAAA---IK------IAKRAE-NAGKLIVVIFPSS 79 (106)
Q Consensus 18 ~~~vD~~i~V~d~ea~~~~r~l~~----~eGi~~G~Ssga~l~aa---~~------~a~~~~-~~~~~Vv~i~~D~ 79 (106)
++.+|+++.|+|+|+++++|.|++ +++++++||++++++++ +. +.++.. .++++||+|+|++
T Consensus 307 ~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aalaa~~~~~~~~~~~~~~~~~~~~~vv~i~tgg 382 (396)
T TIGR03528 307 RDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLLAAVMTNPDYKELREKLQLDKNSRVLLISTEG 382 (396)
T ss_pred HHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHHHHHHhCchhHHHHHhcCCCCCCEEEEEECCC
Confidence 478999999999999999999998 67999999999998444 32 232221 2478999999995
No 78
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=98.51 E-value=2.6e-07 Score=72.04 Aligned_cols=66 Identities=24% Similarity=0.362 Sum_probs=61.5
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 20 ILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 20 ~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
-.-+.|.|+|.|++.+.+.|++.|||+..+.+.+++++..+++++++ +++.||+-+|++|+|.+.+
T Consensus 388 grae~isitd~eclegfk~~srlEGIIPAlEssHAva~~~~lck~l~-~~k~ivi~~sGrGdkDvqS 453 (477)
T KOG1395|consen 388 GRAEFISITDAECLEGFKQLSRLEGIIPALESSHAVAGEAELCKTLP-EDKVIVINISGRGDKDVQS 453 (477)
T ss_pred CceeEEecChHHHHHHHHHHHHhcccccCCchhhHHHHHHHhccccC-CCcEEEEEecCCCCchHHH
Confidence 44588999999999999999999999999999999999999999985 7899999999999998876
No 79
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=98.41 E-value=9.9e-07 Score=68.90 Aligned_cols=64 Identities=13% Similarity=0.226 Sum_probs=50.9
Q ss_pred cccCccCeEEEeCHHHHHHHHHHHHHHh----CceeeechHHHHHHHH---------HHHHHhC-CCCCEEEEEeCCC
Q 037531 16 LDVSILDEVVRVTSNEAIQTAKLLGAKE----GLLVGISSGAAAAAAI---------KIAKRAE-NAGKLIVVIFPSS 79 (106)
Q Consensus 16 ~~~~~vD~~i~V~d~ea~~~~r~l~~~e----Gi~~G~Ssga~l~aa~---------~~a~~~~-~~~~~Vv~i~~D~ 79 (106)
+-++..|.++.|+|+|+.++++.|++.. ++++|||++++++++. ++.+++. .++++||+++|.+
T Consensus 286 ~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~t~g 363 (376)
T TIGR01747 286 ILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVISTEG 363 (376)
T ss_pred HHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEeCCC
Confidence 3357789999999999999999999965 5999999999987776 3333332 2467899888876
No 80
>PRK09225 threonine synthase; Validated
Probab=98.13 E-value=8.3e-06 Score=65.43 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=53.3
Q ss_pred eEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 23 EVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 23 ~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
....|+|+|+.++++++++++|+++.|+||++++++.++. .++.++|++.+.+|.|+...
T Consensus 358 ~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~aa~~~~~----~~~~~~V~l~Ta~p~Kf~~~ 417 (462)
T PRK09225 358 SAGSVSDEETLATIREVYEEYGYLIDPHTAVAYKAAREYL----DPGEPGVVLSTAHPAKFPEV 417 (462)
T ss_pred eEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHHHHhh----CCCCCEEEEecCCccCCHHH
Confidence 5688999999999999999999999999999999998762 24678999999999998665
No 81
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=98.13 E-value=4.4e-06 Score=62.65 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=60.1
Q ss_pred CCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 12 VPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 12 ~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
.++.+-++++|++++|+|+|...+++.++++..+.++|+++..+++++....+. ..+++.+|+|++..
T Consensus 244 ~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~~--~~K~igIiLsGGNV 311 (323)
T KOG1251|consen 244 LTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFAL--NIKRIGIILSGGNV 311 (323)
T ss_pred cchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhHHh--ccCceEEEEeCCcc
Confidence 566677788999999999999999999999999999999999999998877665 36899999998754
No 82
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=98.11 E-value=9.8e-06 Score=64.96 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=54.1
Q ss_pred eEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 23 EVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 23 ~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
....|+|+|+.++++.+++++|+++.|.||++++++.++.++ ++..+|++.+.+|.|+...
T Consensus 361 ~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAva~aa~~~~~~~---~~~~~V~l~Ta~p~Kf~~~ 421 (460)
T cd01560 361 SSGSVSDEETLETIREVYEETGYLIDPHTAVGVRAAERVRKS---PGTPGVVLSTAHPAKFPEA 421 (460)
T ss_pred eEEEECHHHHHHHHHHHHHhcCEEECchHHHHHHHHHHHHhc---cCCCEEEEecCCcccCHHH
Confidence 468899999999999999999999999999999999887654 3468899999999997655
No 83
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=98.09 E-value=7.6e-06 Score=64.55 Aligned_cols=67 Identities=27% Similarity=0.258 Sum_probs=57.8
Q ss_pred cccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccc
Q 037531 16 LDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERY 83 (106)
Q Consensus 16 ~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY 83 (106)
+-+.++|+++.|+|+|+.+++.++.++|..+++|++|+++++.... +....++++||.++++.+-..
T Consensus 290 ~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~-~~~~lk~~~vv~ilsG~n~~~ 356 (457)
T KOG1250|consen 290 LAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSG-KLNHLKGKKVVSILSGGNIDF 356 (457)
T ss_pred HHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhc-cccccCCceEEeecccCCCCc
Confidence 3457899999999999999999999999999999999999999888 333346889999999876553
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=97.70 E-value=0.00021 Score=55.61 Aligned_cols=73 Identities=26% Similarity=0.268 Sum_probs=60.5
Q ss_pred CccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCC--CCEEEEEeCCCCccccChhhcHHHH
Q 037531 19 SILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENA--GKLIVVIFPSSGERYLSSEMFDAER 93 (106)
Q Consensus 19 ~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~--~~~Vv~i~~D~g~kY~s~~~~~~~~ 93 (106)
.-+-+....+.+|++++++.+++.|||+..|.|++++.++...|.+.+.. .++|++-++++|.-.++. |++++
T Consensus 352 ~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsaHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL~~--Y~~yl 426 (432)
T COG1350 352 EGIVEARAYDQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDLSA--YDKYL 426 (432)
T ss_pred cCcccceecChHHHHHHHHHHHHhcCCccCCcchhhHHHHHHHHHhccccCceeEEEEeccCccccchhh--HHHHh
Confidence 34567889999999999999999999999999999999999999876433 357888888888877775 56543
No 85
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=94.62 E-value=0.012 Score=45.77 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=46.6
Q ss_pred cCCCCCCCcCccc---CccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHH
Q 037531 6 GIGIGFVPSVLDV---SILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIA 62 (106)
Q Consensus 6 GiG~~~~p~~~~~---~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a 62 (106)
|+..++.+.++-+ .++|..++|+|+..+...+.|++.||+.++||+-|.+.+-.++.
T Consensus 339 GLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalAgm~Gp~~~~ 398 (443)
T COG3048 339 GLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALAGMAGPQRVC 398 (443)
T ss_pred ceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchhhhcccCcceee
Confidence 4555665555554 68999999999999999999999999999999888877665544
No 86
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=84.86 E-value=3.5 Score=30.84 Aligned_cols=57 Identities=12% Similarity=0.153 Sum_probs=46.0
Q ss_pred EEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCcc
Q 037531 25 VRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGER 82 (106)
Q Consensus 25 i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~k 82 (106)
.+||++|..+++...+...+.++-|-++.+.-...+...+-. +.-.+.++.+-+..|
T Consensus 149 e~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~-ps~~~i~lstAh~aK 205 (266)
T KOG2616|consen 149 ERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQ-PSIPYICLSTAHPAK 205 (266)
T ss_pred hhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccC-CCCceEEecccChhh
Confidence 579999999999999999999999999999888877765542 444566666666666
No 87
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=82.47 E-value=7.1 Score=29.89 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHH-hCceeeechHHHHHHHHHHHHHhCCC-CCEEEEEeCCCCccccChhhcHHHHHHHhcCcc
Q 037531 29 SNEAIQTAKLLGAK-EGLLVGISSGAAAAAAIKIAKRAENA-GKLIVVIFPSSGERYLSSEMFDAERQAAENMAY 101 (106)
Q Consensus 29 d~ea~~~~r~l~~~-eGi~~G~Ssga~l~aa~~~a~~~~~~-~~~Vv~i~~D~g~kY~s~~~~~~~~~~~~~~~~ 101 (106)
..+++..+++.+++ +.+.++.|+|-==.+.+.++.+...+ ...+-++..|+|.++..+.-|-+.....-|+++
T Consensus 13 e~esi~iLrea~~~f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l 87 (301)
T PRK05253 13 EAESIHILREVAAEFENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFPEMIEFRDRRAKELGLEL 87 (301)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCE
Confidence 35677777777665 57889999988777777777654212 346778899999988776556666655555554
No 88
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=81.54 E-value=8.4 Score=29.48 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHH-hCceeeechHHHHHHHHHHHHHhCCC-CCEEEEEeCCCCccccChhhcHHHHHHHhcCcc
Q 037531 29 SNEAIQTAKLLGAK-EGLLVGISSGAAAAAAIKIAKRAENA-GKLIVVIFPSSGERYLSSEMFDAERQAAENMAY 101 (106)
Q Consensus 29 d~ea~~~~r~l~~~-eGi~~G~Ssga~l~aa~~~a~~~~~~-~~~Vv~i~~D~g~kY~s~~~~~~~~~~~~~~~~ 101 (106)
..|++.-+|+.+.+ +...+..|+|-==.+.+.++.+...+ ...+-++..|.|.+|..++-|-+.+...-|+++
T Consensus 5 e~esi~ilRe~~~~f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl~l 79 (294)
T TIGR02039 5 ESEAIHIIREVAAEFERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFREMIAFRDHMVAKYGLRL 79 (294)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCE
Confidence 45777788887665 45778888887777777777665222 346788999999999888666666655555543
No 89
>PRK13794 hypothetical protein; Provisional
Probab=75.46 E-value=15 Score=29.95 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHh--CceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccChhhcHHHHHHHhcCcc
Q 037531 29 SNEAIQTAKLLGAKE--GLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAENMAY 101 (106)
Q Consensus 29 d~ea~~~~r~l~~~e--Gi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~~~~~~~~~~~~~~~~ 101 (106)
..+|++.++..+++. .+.++.|+|-==.+.+.++.+.. +.++.+++.|+|.-+..|.-|-+.+...-++++
T Consensus 232 ~~~a~~~i~~~~~~~~~~v~vs~SGGKDS~v~L~L~~~~~--~~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i 304 (479)
T PRK13794 232 ERNSIGFIRNTAEKINKPVTVAYSGGKDSLATLLLALKAL--GINFPVLFNDTGLEFPETLENVEDVEKHYGLEI 304 (479)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecchHHHHHHHHHHHHHh--CCCeEEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence 366777777777643 47899999887777777765531 346778999999888777555555555555554
No 90
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=68.49 E-value=6.1 Score=27.84 Aligned_cols=42 Identities=14% Similarity=0.365 Sum_probs=32.9
Q ss_pred ceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 45 LLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 45 i~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
|++|.|++.+..-+.++.+.+...+..|-+++++++.+.++.
T Consensus 3 I~lgvtGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~~ 44 (177)
T TIGR02113 3 ILLAVTGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFITP 44 (177)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhccH
Confidence 678888887777777888777545678999999999887763
No 91
>PF04229 GrpB: GrpB protein; InterPro: IPR007344 This family of uncharacterised proteins is also known as GrpB.; PDB: 2NRK_A.
Probab=66.49 E-value=1.7 Score=30.27 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=32.1
Q ss_pred CcccCCCCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCcee
Q 037531 3 KIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLV 47 (106)
Q Consensus 3 ~i~GiG~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~ 47 (106)
.|+.||...||+..-+..+|=.+.|++.+.+.......+..|+..
T Consensus 34 ~IeHIGSTsVpgl~AKpiIDI~v~V~~~~~~~~~~~~L~~~Gy~~ 78 (167)
T PF04229_consen 34 RIEHIGSTSVPGLAAKPIIDILVGVEDLEDLDAYIEALEALGYVY 78 (167)
T ss_dssp EEEEESGGGSTT--B-S-EEEEEEES-SGGGGGGHHHHHHTT-EE
T ss_pred EEEEeccceeCCcccCCeeeEEeccCChHHHHHHHHHHHHcCCEe
Confidence 378999999999999999999999999887765555556678865
No 92
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=66.31 E-value=6.4 Score=27.84 Aligned_cols=41 Identities=10% Similarity=0.272 Sum_probs=33.2
Q ss_pred ceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccC
Q 037531 45 LLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLS 85 (106)
Q Consensus 45 i~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s 85 (106)
|++|-||+.+..-+.++.+.+...+..|-+++++++.+.++
T Consensus 2 illgvtGsiaa~ka~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 2 IVVAMTGASGVIYGIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred EEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 67888888777778888877754577899999999999764
No 93
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=64.44 E-value=37 Score=24.03 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhCc---eeeechHHHHHHHHHHHHHh-C----CCCCEEEEEeCCCCcc
Q 037531 29 SNEAIQTAKLLGAKEGL---LVGISSGAAAAAAIKIAKRA-E----NAGKLIVVIFPSSGER 82 (106)
Q Consensus 29 d~ea~~~~r~l~~~eGi---~~G~Ssga~l~aa~~~a~~~-~----~~~~~Vv~i~~D~g~k 82 (106)
-+++++..++..+++|= ++|-|-||++++.+-...+. . .+.-+.++++|+..-.
T Consensus 86 ~~~sl~~l~~~i~~~GPfdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~ 147 (212)
T PF03959_consen 86 LDESLDYLRDYIEENGPFDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPP 147 (212)
T ss_dssp -HHHHHHHHHHHHHH---SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----E
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCC
Confidence 37899999999999994 78999999998876543322 1 1223566666665443
No 94
>COG2320 GrpB Uncharacterized conserved protein [Function unknown]
Probab=63.87 E-value=8 Score=27.84 Aligned_cols=91 Identities=19% Similarity=0.083 Sum_probs=54.0
Q ss_pred CcccCCCCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCce----eeechHHHHHHHHHHHHHhCCCC-CEEEEEeC
Q 037531 3 KIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLL----VGISSGAAAAAAIKIAKRAENAG-KLIVVIFP 77 (106)
Q Consensus 3 ~i~GiG~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~----~G~Ssga~l~aa~~~a~~~~~~~-~~Vv~i~~ 77 (106)
.+|.||..-||.+-.+..+|=.+.|.+-++......-....|+. .|.+.-.-++..+..+ .++ .+.|=+++
T Consensus 48 ~veHIGSTAVpgl~aKpiiDILv~v~~l~~a~~~~~~l~~~Gy~h~~~~~~~~~~r~~~~r~~~----~~~~p~~~hv~~ 123 (185)
T COG2320 48 RVEHIGSTAVPGLPAKPIIDILVVVESLDAADELAEPLSAAGYPHVTNDGRTLRFRLWLKRVHA----SAREPTHVHVVT 123 (185)
T ss_pred ceeeecccCcCCcccccceeEEEeecchhhHHHHhhHHHhcCCCcccccCcccccchheeeccc----cCCCCeeEEEEe
Confidence 47899999999999999999888886555555433223345665 2222111122222211 122 25555666
Q ss_pred CCCccccChhhcHHHHHHHh
Q 037531 78 SSGERYLSSEMFDAERQAAE 97 (106)
Q Consensus 78 D~g~kY~s~~~~~~~~~~~~ 97 (106)
=++.-+.--..|.||+.+..
T Consensus 124 ~G~~~~~~~l~FrD~Lra~P 143 (185)
T COG2320 124 RGSPEIEFALLFRDWLRANP 143 (185)
T ss_pred CCChHHHHHHHHHHHHHhCH
Confidence 66656777778888776543
No 95
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=63.35 E-value=12 Score=26.90 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCceeeechHHHHHHHHHHHH-HhCCCCCEEEEEeCCCCc-ccc
Q 037531 31 EAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAK-RAENAGKLIVVIFPSSGE-RYL 84 (106)
Q Consensus 31 ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~-~~~~~~~~Vv~i~~D~g~-kY~ 84 (106)
+++..+..-.+ -| +.|.+++-++.-+.+..+ +.+ ...+||++++|+-. .|-
T Consensus 75 ~~l~~~l~~~q-~g-~ag~~TadAi~~av~rl~~~~~-a~~kvvILLTDG~n~~~~ 127 (191)
T cd01455 75 ETLKMMHAHSQ-FC-WSGDHTVEATEFAIKELAAKED-FDEAIVIVLSDANLERYG 127 (191)
T ss_pred HHHHHHHHhcc-cC-ccCccHHHHHHHHHHHHHhcCc-CCCcEEEEEeCCCcCCCC
Confidence 56655555433 24 477788877877777765 543 56799999999874 554
No 96
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=61.64 E-value=56 Score=25.31 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHH-hCceeeechHHHHHHHHHHHHHhC-CCCCEEEEEeCCCCccccChhhcHHHHHHHhcCcc
Q 037531 29 SNEAIQTAKLLGAK-EGLLVGISSGAAAAAAIKIAKRAE-NAGKLIVVIFPSSGERYLSSEMFDAERQAAENMAY 101 (106)
Q Consensus 29 d~ea~~~~r~l~~~-eGi~~G~Ssga~l~aa~~~a~~~~-~~~~~Vv~i~~D~g~kY~s~~~~~~~~~~~~~~~~ 101 (106)
..+++..++..+.+ +.+.+..|+|.-=.+.+.++.+.. +..-.+-+++-|+|.++..|+-|-+.+...-|+++
T Consensus 23 e~esi~ilrea~~~f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~L 97 (312)
T PRK12563 23 EAESIHILREVVAECSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFREMIDFRDRRAKELGLDL 97 (312)
T ss_pred HHHHHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCcE
Confidence 46777777776553 567788888877777888886641 11234667888999999998777776666656554
No 97
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=61.19 E-value=12 Score=29.60 Aligned_cols=46 Identities=22% Similarity=0.157 Sum_probs=39.6
Q ss_pred CcccCCCCCCCcCcccCccCeEEEeCHHHHHHHHHHHHHHhCceee
Q 037531 3 KIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVG 48 (106)
Q Consensus 3 ~i~GiG~~~~p~~~~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G 48 (106)
.|++||..-||+.--+..||=.+.|++.+.+..+....+..|+..-
T Consensus 242 ~IeHIGSTsVpGl~AKPiIDI~v~V~~~~~~~~~~~~l~~~Gy~~~ 287 (395)
T PRK03333 242 RVDHIGSTAVPGLDAKDVIDIQVTVESLAVADELAEPLAAAGFPRL 287 (395)
T ss_pred EEEEeccCCCCCCccCCeeeEEEeeCChHHHHHHHHHHHHCCCccc
Confidence 3789999999999999999999999999887777777777888753
No 98
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=60.91 E-value=27 Score=25.44 Aligned_cols=66 Identities=20% Similarity=0.123 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHH--hCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccChhhcHHHHHHHhcC
Q 037531 31 EAIQTAKLLGAK--EGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAENM 99 (106)
Q Consensus 31 ea~~~~r~l~~~--eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~~~~~~~~~~~~~~ 99 (106)
++++.++...++ ..+.+..|+|-==.+.+.++.+. +..+.+++.|.|.-+..|.-|-+.+...=++
T Consensus 27 ~~~e~i~~a~~~~~~~i~vs~SGGKDS~vlL~L~~~~---~~~i~vvfiDTG~~~pet~e~~~~~~~~~gl 94 (241)
T PRK02090 27 SAQERLAWALENFGGRLALVSSFGAEDAVLLHLVAQV---DPDIPVIFLDTGYLFPETYRFIDELTERLLL 94 (241)
T ss_pred CHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhc---CCCCcEEEecCCCCCHHHHHHHHHHHHHhCC
Confidence 344444444443 35899999998888888888774 3468999999998766675555544333333
No 99
>PRK00919 GMP synthase subunit B; Validated
Probab=60.89 E-value=23 Score=27.27 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCcc
Q 037531 30 NEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGER 82 (106)
Q Consensus 30 ~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~k 82 (106)
++.++..+.......++++.|||.==..+..++.+. -+.++.+++.|+|.+
T Consensus 9 ~~~~~~l~~~~~~~kVlVa~SGGVDSsvla~la~~~--lG~~v~aV~vD~G~~ 59 (307)
T PRK00919 9 EEAIEEIREEIGDGKAIIALSGGVDSSVAAVLAHRA--IGDRLTPVFVDTGLM 59 (307)
T ss_pred HHHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHH--hCCeEEEEEEECCCC
Confidence 456667777777789999999997655556666553 256899999999986
No 100
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=60.46 E-value=24 Score=23.09 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=34.1
Q ss_pred ceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccChhhcHHHHHHHhcCc
Q 037531 45 LLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAENMA 100 (106)
Q Consensus 45 i~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~~~~~~~~~~~~~~~ 100 (106)
++++.|+|-==.+++.++.+...+...+.+++.|.|..+..+.-+-+.+...-+++
T Consensus 2 i~v~~SGGkDS~~ll~l~~~~~~~~~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~ 57 (173)
T cd01713 2 VVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDRVAERYGLP 57 (173)
T ss_pred eEEEecCChHHHHHHHHHHHhcccccCceEEEeCCCCCCHHHHHHHHHHHHHhCCC
Confidence 46777777766666666665421113788999999987655544444444444444
No 101
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=60.35 E-value=11 Score=26.68 Aligned_cols=43 Identities=16% Similarity=0.397 Sum_probs=33.3
Q ss_pred CceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 44 GLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 44 Gi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
.|++|.|++.+..-+.++.+.+...+..|-++++.++.+.++.
T Consensus 3 ~Ill~vtGsiaa~~~~~li~~L~~~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 3 NILLAVSGSIAAYKAADLTSQLTKRGYQVTVLMTKAATKFITP 45 (182)
T ss_pred EEEEEEeChHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHcCH
Confidence 3677888877777777777777545778999999999998774
No 102
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=59.38 E-value=60 Score=22.91 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=21.1
Q ss_pred eechHHHHHHHHHHHHHh----CCCCCEEEEEeCCCCcccc
Q 037531 48 GISSGAAAAAAIKIAKRA----ENAGKLIVVIFPSSGERYL 84 (106)
Q Consensus 48 G~Ssga~l~aa~~~a~~~----~~~~~~Vv~i~~D~g~kY~ 84 (106)
|...+.+|..|.++.... .+.-.+++++++|++....
T Consensus 106 gT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~ 146 (193)
T cd01477 106 ASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEG 146 (193)
T ss_pred cchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCC
Confidence 455566666665555421 0112589999998654433
No 103
>PRK13795 hypothetical protein; Provisional
Probab=56.91 E-value=40 Score=28.42 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHH--hCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccChhhcHHHHHHHhcCcc
Q 037531 30 NEAIQTAKLLGAK--EGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAENMAY 101 (106)
Q Consensus 30 ~ea~~~~r~l~~~--eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~~~~~~~~~~~~~~~~ 101 (106)
++|++.++..+++ +.+.++.|+|-==.+.+.++.+.. ..+.+++.|+|..+..|.-|-+.+...-++++
T Consensus 229 ~~ai~~Ir~~~~~~~~~v~Va~SGGKDS~vll~L~~~a~---~~~~vvfiDTg~efpet~e~v~~~~~~~gi~i 299 (636)
T PRK13795 229 KEAVNFIRGVAEKYNLPVSVSFSGGKDSLVVLDLAREAL---KDFKAFFNNTGLEFPETVENVKEVAEEYGIEL 299 (636)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHhC---CCcEEEEEeCCCCCHHHHHHHHHHHHHcCCcE
Confidence 5677777777764 358999999876666667766542 23677888999887776555555555445554
No 104
>PRK08557 hypothetical protein; Provisional
Probab=54.93 E-value=42 Score=26.95 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHh-----CceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccChhhcHHHHHHHhcCcc
Q 037531 29 SNEAIQTAKLLGAKE-----GLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAENMAY 101 (106)
Q Consensus 29 d~ea~~~~r~l~~~e-----Gi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~~~~~~~~~~~~~~~~ 101 (106)
..+|++.++..+++- -+.++.|+|-=-.+++.++.+.. ..+-+++.|+|..+..|.-|-+.+...-++++
T Consensus 163 e~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~~~~~---~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i 237 (417)
T PRK08557 163 EENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAKEVI---PDLEVIFIDTGLEYPETINYVKDFAKKYDLNL 237 (417)
T ss_pred HHHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHHHHhC---CCCEEEEEECCCCCHHHHHHHHHHHHHhCCCE
Confidence 345666667766543 25688888877777777776642 24566788999888777555555555445554
No 105
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=51.57 E-value=12 Score=24.71 Aligned_cols=36 Identities=8% Similarity=0.150 Sum_probs=27.7
Q ss_pred ceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 45 LLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 45 i~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
+-..+-+|+.+..+.+++++.. +...++++|+|.--
T Consensus 59 ~~~~GgGGTdf~pvf~~~~~~~-~~~~~vi~fTDg~~ 94 (126)
T PF09967_consen 59 IKLKGGGGTDFRPVFEYLEENR-PRPSVVIYFTDGEG 94 (126)
T ss_pred cccCCCCCCcchHHHHHHHhcC-CCCCEEEEEeCCCC
Confidence 4456778889999999988764 55688889999433
No 106
>PF03283 PAE: Pectinacetylesterase
Probab=50.59 E-value=39 Score=26.51 Aligned_cols=52 Identities=15% Similarity=0.074 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHH-----hCceeeechHHHHHHHHH---HHHHhCCCCCEEEEEeCCCCcc
Q 037531 29 SNEAIQTAKLLGAK-----EGLLVGISSGAAAAAAIK---IAKRAENAGKLIVVIFPSSGER 82 (106)
Q Consensus 29 d~ea~~~~r~l~~~-----eGi~~G~Ssga~l~aa~~---~a~~~~~~~~~Vv~i~~D~g~k 82 (106)
..-..+.+..|.++ +-+++.++||..+++.+. +++.+ +...-|..++|+|.-
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d~~~~~l--p~~~~v~~~~DsG~f 196 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHADYVRDRL--PSSVKVKCLSDSGFF 196 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHHHHHHHh--ccCceEEEecccccc
Confidence 33334445556665 557888888888877653 33333 346777899998865
No 107
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=50.21 E-value=22 Score=25.40 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=29.5
Q ss_pred ceeeechHHHHHHHH-HHHHHhCCCCCEEEEEeCCCCcc
Q 037531 45 LLVGISSGAAAAAAI-KIAKRAENAGKLIVVIFPSSGER 82 (106)
Q Consensus 45 i~~G~Ssga~l~aa~-~~a~~~~~~~~~Vv~i~~D~g~k 82 (106)
+++|.|++.+..-+. ++.+.+...+..|-++++.++.+
T Consensus 3 I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 3 IGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred EEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 677778777777774 88887755577898999999975
No 108
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=49.84 E-value=13 Score=26.50 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=34.0
Q ss_pred CceeeechHHHHHHHHHHHHHhCC-CCCEEEEEeCCCCccccCh
Q 037531 44 GLLVGISSGAAAAAAIKIAKRAEN-AGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 44 Gi~~G~Ssga~l~aa~~~a~~~~~-~~~~Vv~i~~D~g~kY~s~ 86 (106)
.|++|.||+.+..-+.++.+.+.. .+..|=++++.++.+.++.
T Consensus 3 ~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 3 RLIVGISGASGAIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred EEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 478888988877788888887753 3678999999999986654
No 109
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=49.44 E-value=23 Score=25.57 Aligned_cols=43 Identities=7% Similarity=0.098 Sum_probs=33.9
Q ss_pred hCceeeechHHHHHH-HHHHHHHhCCCCCEEEEEeCCCCccccC
Q 037531 43 EGLLVGISSGAAAAA-AIKIAKRAENAGKLIVVIFPSSGERYLS 85 (106)
Q Consensus 43 eGi~~G~Ssga~l~a-a~~~a~~~~~~~~~Vv~i~~D~g~kY~s 85 (106)
..|++|.||+.+..- +.++.+++...+..|-++++.++.+..+
T Consensus 6 k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~~ 49 (196)
T PRK08305 6 KRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDT 49 (196)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHhh
Confidence 348899999888887 6888888755677888999999987543
No 110
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=48.91 E-value=42 Score=25.73 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccc
Q 037531 30 NEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERY 83 (106)
Q Consensus 30 ~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY 83 (106)
++.++..+.......++++.|||.==..+..++.+. -+.++.++..|+|.+-
T Consensus 4 ~~~~~~l~~~v~~~kVvValSGGVDSsvla~ll~~~--~G~~v~av~vd~G~~~ 55 (311)
T TIGR00884 4 EEAVEEIREQVGDAKVIIALSGGVDSSVAAVLAHRA--IGDRLTCVFVDHGLLR 55 (311)
T ss_pred HHHHHHHHHHhCCCcEEEEecCChHHHHHHHHHHHH--hCCCEEEEEEeCCCCC
Confidence 356667777777789999999996545555555442 1468999999999863
No 111
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=48.80 E-value=60 Score=19.72 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=30.3
Q ss_pred ceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccChhhcHHHHHH
Q 037531 45 LLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSSEMFDAERQA 95 (106)
Q Consensus 45 i~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~~~~~~~~~~ 95 (106)
++.|+++-+.+.+.++...+.. ...+|.++.+ .|+.+..+|.+.+..
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~-~~~~v~l~~~---~r~~~~~~~~~~l~~ 47 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN-DNRKVTLFYG---ARTPEDLLFRDELEA 47 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT-CTSEEEEEEE---ESSGGGSTTHHHHHH
T ss_pred CeecceeHHHHHHHHHHHHHhC-CCCCEEEEEE---EcccccccchhHHHH
Confidence 4678888888888887776542 4556666654 355555566654433
No 112
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=48.38 E-value=9.2 Score=28.02 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=42.1
Q ss_pred CccCeEEEeCHHHHHHHHHHHHH---HhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCcc
Q 037531 19 SILDEVVRVTSNEAIQTAKLLGA---KEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGER 82 (106)
Q Consensus 19 ~~vD~~i~V~d~ea~~~~r~l~~---~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~k 82 (106)
+.+|+.+.-.+..+++....+.+ +.++..+++||-.+..++++.++...+ .=-.++||.|..
T Consensus 7 sDlD~Tl~~~~~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l~--~Pd~~I~svGt~ 71 (247)
T PF05116_consen 7 SDLDGTLIDGDDEALARLEELLEQQARPEILFVYVTGRSLESVLRLLREYNLP--QPDYIITSVGTE 71 (247)
T ss_dssp EETBTTTBHCHHHHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT-E--E-SEEEETTTTE
T ss_pred EECCCCCcCCCHHHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhCCCC--CCCEEEecCCeE
Confidence 34455444577888888888887 788999999999999999998764210 112566776655
No 113
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=47.85 E-value=56 Score=24.19 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHHhCc--eeeechHHHHHHHHHHHHH
Q 037531 28 TSNEAIQTAKLLGAKEGL--LVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eGi--~~G~Ssga~l~aa~~~a~~ 64 (106)
+.+.+.+.+++|..++|+ ++|+++.....++...+++
T Consensus 49 ~p~~a~~~~~~lv~~~~v~~viG~~~s~~~~a~~~~~~~ 87 (333)
T cd06359 49 KPDVAKQAAERLIKRDKVDFVTGVVFSNVLLAVVPPVLE 87 (333)
T ss_pred ChHHHHHHHHHHHhhcCCcEEEccCCcHHHHHHHHHHHH
Confidence 467899999999988787 6687554444455555544
No 114
>PRK05920 aromatic acid decarboxylase; Validated
Probab=47.42 E-value=23 Score=25.65 Aligned_cols=41 Identities=10% Similarity=0.245 Sum_probs=31.7
Q ss_pred CceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCcccc
Q 037531 44 GLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYL 84 (106)
Q Consensus 44 Gi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~ 84 (106)
.|++|.|++.+..-+.++.+.+...+..|-++++.++.+..
T Consensus 5 rIllgITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 5 RIVLAITGASGAIYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred EEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 47788888887778888888775457788899999888843
No 115
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=46.91 E-value=60 Score=22.11 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHH---hC------ceeeechHHHHHHHHHHHHHhC--CCCCEEEEEeC
Q 037531 29 SNEAIQTAKLLGAK---EG------LLVGISSGAAAAAAIKIAKRAE--NAGKLIVVIFP 77 (106)
Q Consensus 29 d~ea~~~~r~l~~~---eG------i~~G~Ssga~l~aa~~~a~~~~--~~~~~Vv~i~~ 77 (106)
-+|+.++.+.+.++ .| +++|-|+|+.++..+-+..... ..-+.++.+.+
T Consensus 49 ~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p 108 (211)
T PF07859_consen 49 LEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISP 108 (211)
T ss_dssp HHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESC
T ss_pred ccccccceeeeccccccccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccc
Confidence 35667777777665 23 5889999999877654432221 11245555555
No 116
>PRK06850 hypothetical protein; Provisional
Probab=46.65 E-value=1.5e+02 Score=24.64 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhC--ceeeechHHHHHHHHHHH----HHhCC--CCCEEEEEeCCCCccccChhhc
Q 037531 29 SNEAIQTAKLLGAKEG--LLVGISSGAAAAAAIKIA----KRAEN--AGKLIVVIFPSSGERYLSSEMF 89 (106)
Q Consensus 29 d~ea~~~~r~l~~~eG--i~~G~Ssga~l~aa~~~a----~~~~~--~~~~Vv~i~~D~g~kY~s~~~~ 89 (106)
-++++..+++++.... ..+|.|||=-=.+++.++ ..++. ..+.|.++++|+|.-...+..|
T Consensus 19 ~~~~i~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~Pe~~~~ 87 (507)
T PRK06850 19 IEELIEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENPVVVDW 87 (507)
T ss_pred HHHHHHHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccHHHHHH
Confidence 3456777788776545 489999774333333332 22221 2357999999999877665444
No 117
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=45.33 E-value=58 Score=21.33 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCceeee-chHHHHHHHHHHHHHh--CCCCCEEEEEeCCCCc
Q 037531 31 EAIQTAKLLGAKEGLLVGI-SSGAAAAAAIKIAKRA--ENAGKLIVVIFPSSGE 81 (106)
Q Consensus 31 ea~~~~r~l~~~eGi~~G~-Ssga~l~aa~~~a~~~--~~~~~~Vv~i~~D~g~ 81 (106)
+.+..+....+. ..+ .+++++..+++.+-+. .....+.+++++|+..
T Consensus 59 ~~~~~a~~~I~~----~~~~~G~t~l~~aL~~a~~~~~~~~~~~~IilltDG~~ 108 (155)
T PF13768_consen 59 ENRQEALQWIKS----LEANSGGTDLLAALRAALALLQRPGCVRAIILLTDGQP 108 (155)
T ss_pred HHHHHHHHHHHH----hcccCCCccHHHHHHHHHHhcccCCCccEEEEEEeccC
Confidence 444444444444 344 6777888888877554 2234578888888873
No 118
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=45.26 E-value=47 Score=24.59 Aligned_cols=37 Identities=27% Similarity=0.260 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHhCc--eeeechHHHHHHHHHHHHH
Q 037531 28 TSNEAIQTAKLLGAKEGL--LVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eGi--~~G~Ssga~l~aa~~~a~~ 64 (106)
+.+.+.+.+++|.+++|+ ++|+++.....++..++++
T Consensus 50 ~p~~a~~~a~~li~~~~v~aiiG~~~s~~~~a~~~~~~~ 88 (332)
T cd06344 50 DPEIAKKVADELVKDPEILGVVGHYSSDATLAALDIYQK 88 (332)
T ss_pred ChHHHHHHHHHHhcccCceEEEcCCCcHHHHHHHHHHhh
Confidence 567899999999988775 7777654443455555554
No 119
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=43.78 E-value=1.1e+02 Score=21.61 Aligned_cols=46 Identities=30% Similarity=0.255 Sum_probs=31.3
Q ss_pred eCHHHHHHHHHHHHHHhC----ceeeechHHHHHHHHHHHHHhCCCCCEEEEEeC
Q 037531 27 VTSNEAIQTAKLLGAKEG----LLVGISSGAAAAAAIKIAKRAENAGKLIVVIFP 77 (106)
Q Consensus 27 V~d~ea~~~~r~l~~~eG----i~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~ 77 (106)
-+.+++++.+..+.++.+ .++|.|=|.-++ .+++++.. .+.|+|.|
T Consensus 40 ~~p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A--~~La~~~~---~~avLiNP 89 (187)
T PF05728_consen 40 PFPEEAIAQLEQLIEELKPENVVLIGSSLGGFYA--TYLAERYG---LPAVLINP 89 (187)
T ss_pred cCHHHHHHHHHHHHHhCCCCCeEEEEEChHHHHH--HHHHHHhC---CCEEEEcC
Confidence 456889999989888755 788988888553 35666652 23355554
No 120
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=43.64 E-value=40 Score=26.11 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccC
Q 037531 30 NEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLS 85 (106)
Q Consensus 30 ~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s 85 (106)
++++...|+-.-+...+++.|+|.--..+--++.+. -+++..++|-|+|.-=..
T Consensus 9 e~~i~~ir~~vg~~kvi~alSGGVDSsv~a~L~~~A--iGd~l~cvfVD~GLlR~~ 62 (315)
T COG0519 9 EEAIEEIREQVGDGKVILALSGGVDSSVAAVLAHRA--IGDQLTCVFVDHGLLRKG 62 (315)
T ss_pred HHHHHHHHHHhCCceEEEEecCCCcHHHHHHHHHHH--hhcceEEEEecCCcccCC
Confidence 456666666666677899999886555554455543 367899999999975433
No 121
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=42.41 E-value=19 Score=25.56 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=20.4
Q ss_pred ceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Q 037531 45 LLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSS 79 (106)
Q Consensus 45 i~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~ 79 (106)
+++||++..=---+.|+|......+.+|.++.+|.
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~ 39 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT 39 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred EEECCCCCchHhHHHHHHHHHhhccccceeecCCC
Confidence 46787765444444555544422377899999985
No 122
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=42.12 E-value=4.3 Score=26.66 Aligned_cols=42 Identities=29% Similarity=0.513 Sum_probs=28.6
Q ss_pred ceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 45 LLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 45 i~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
+++|.|++.+..-+.++.+++...+..|-++++.++.++++.
T Consensus 3 i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 3 ILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp EEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEESHHHHHHSHH
T ss_pred EEEEEECHHHHHHHHHHHHHHhhCCCEEEEEECCcHHHHhhh
Confidence 455555555545577777766545678999999999887665
No 123
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=41.80 E-value=79 Score=22.29 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=37.4
Q ss_pred CceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccChhhcHHHHHHH
Q 037531 44 GLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAA 96 (106)
Q Consensus 44 Gi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~~~~~~~~~~~ 96 (106)
.+.+..|+|.-=.+.+.++.+.. ..+-+++.|.|..|..|.-|-++....
T Consensus 15 ~~~~s~SgGKDS~Vll~L~~~~~---~~~~v~f~DTg~efpeT~efv~~~~~~ 64 (212)
T TIGR00434 15 HLVYSTSFGIQGAVLLDLVSKIS---PDIPVIFLDTGYHFPETYELIDELTER 64 (212)
T ss_pred CEEEEecCCHHHHHHHHHHHhcC---CCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 57788888888888888887653 246677999999999996666655443
No 124
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=40.80 E-value=32 Score=24.03 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=24.8
Q ss_pred echHHHHHHHHHHHHHhCCCCC-EEEEEeCCCCccc
Q 037531 49 ISSGAAAAAAIKIAKRAENAGK-LIVVIFPSSGERY 83 (106)
Q Consensus 49 ~Ssga~l~aa~~~a~~~~~~~~-~Vv~i~~D~g~kY 83 (106)
+.+++++..+++.+.+...++. +.+++++|+....
T Consensus 113 ~~G~T~l~~aL~~a~~~l~~~~~~~iillTDG~~~~ 148 (206)
T cd01456 113 PTGWTPLAAALAEAAAYVDPGRVNVVVLITDGEDTC 148 (206)
T ss_pred CCCcChHHHHHHHHHHHhCCCCcceEEEEcCCCccC
Confidence 4556788888888765432455 8999999987654
No 125
>PF09892 DUF2119: Uncharacterized protein conserved in archaea (DUF2119); InterPro: IPR019218 This entry represents a family of hypothetical archaeal proteins of unknown function.
Probab=40.68 E-value=32 Score=24.94 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=32.4
Q ss_pred CceeeechHHHHHHHHHHHHHhCC----CCCEEEEEeCCCCccccChhhcHHHHHHHhcCcc
Q 037531 44 GLLVGISSGAAAAAAIKIAKRAEN----AGKLIVVIFPSSGERYLSSEMFDAERQAAENMAY 101 (106)
Q Consensus 44 Gi~~G~Ssga~l~aa~~~a~~~~~----~~~~Vv~i~~D~g~kY~s~~~~~~~~~~~~~~~~ 101 (106)
.+|+|+=.|-=--....+.+++.+ .|.-++.-++++ .+|.|| +..++....+|..+
T Consensus 9 rLFvgGlHG~Egk~t~~iL~~l~~~~~~~G~l~i~plv~~-~kYiST-L~~~YY~s~~Gk~i 68 (193)
T PF09892_consen 9 RLFVGGLHGDEGKDTSPILKRLKPNDFNNGNLIIIPLVEN-SKYIST-LDPEYYKSEMGKKI 68 (193)
T ss_pred EEEEeeccCcchhhHHHHHHHhCcccccCceEEEEeCCCC-CCceee-cCHHHhcchhhhHH
Confidence 366766655444444444444421 233444455888 799999 67776665555443
No 126
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=39.42 E-value=1.1e+02 Score=22.64 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHhCc--eeeechHHHHHHHHHHHHH
Q 037531 28 TSNEAIQTAKLLGAKEGL--LVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eGi--~~G~Ssga~l~aa~~~a~~ 64 (106)
+...+.+.+++|..++++ ++|+.+.....++...+++
T Consensus 50 ~p~~a~~~~~~l~~~~~V~aviG~~~s~~~~a~~~~~~~ 88 (334)
T cd06327 50 KADVAAAKAREWIDRDGVDMIVGGPNSAVALAVQEVARE 88 (334)
T ss_pred CchHHHHHHHHHHhhcCceEEECCccHHHHHHHHHHHHH
Confidence 456899999999987775 7787544444444455544
No 127
>PF09176 Mpt_N: Methylene-tetrahydromethanopterin dehydrogenase, N-terminal; InterPro: IPR015259 Prokaryotic methylene-tetrahydromethanopterin dehydrogenase catalyses the dehydrogenation of methylene-tetrahydromethanopterin during growth on one-carbon compounds such as methanol. It can also catalyse the reversible dehydrogenation of methylene-tetrahydrofolate, though at much lower efficiency []. The pterin domain of this protein is composed of two alpha-beta segments found at the N- and C-terminal ends of the polypeptide respectivly. This entry represents the N-terminal segment of the pterin domain, with a core comprising three alpha/beta/alpha layers in which each sheet contains four strands. ; PDB: 1LUA_A 1LU9_C.
Probab=38.93 E-value=58 Score=20.36 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=16.6
Q ss_pred HHHhCceeeechHHHHHHHHHHHHH
Q 037531 40 GAKEGLLVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 40 ~~~eGi~~G~Ssga~l~aa~~~a~~ 64 (106)
.+++|||+|++-...-...++.+++
T Consensus 42 ~~~TaiFIGG~d~~~a~dml~~ak~ 66 (81)
T PF09176_consen 42 LKRTAIFIGGRDVALAEDMLEAAKK 66 (81)
T ss_dssp GGGEEEEEE-S-HHHHHHHHHHHHH
T ss_pred CceeEEEECCccHHHHHHHHHHHHH
Confidence 4678999999987766666666654
No 128
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=38.44 E-value=38 Score=24.53 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHH--hCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 30 NEAIQTAKLLGAK--EGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 30 ~ea~~~~r~l~~~--eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
++..+.++.+++. .+|++|+|.|...--..++.+..+...+.=|++++.+..
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~ 64 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGNVN 64 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCcc
Confidence 4444445555554 889999997664444433332221111222344666544
No 129
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=37.70 E-value=27 Score=26.30 Aligned_cols=51 Identities=18% Similarity=0.353 Sum_probs=33.9
Q ss_pred CCCcccCCC--------CCCCcCcccC--ccCeEEEeCHHHHHHHHHHHHHHhC---ceeeech
Q 037531 1 HHKIQGIGI--------GFVPSVLDVS--ILDEVVRVTSNEAIQTAKLLGAKEG---LLVGISS 51 (106)
Q Consensus 1 ~~~i~GiG~--------~~~p~~~~~~--~vD~~i~V~d~ea~~~~r~l~~~eG---i~~G~Ss 51 (106)
|++++|.|. +.++.-+... .+=-.+.|.+.++++..-.++.-+| +|+||+=
T Consensus 115 P~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~gl~nLDaIaaveGVDgvFiGPaD 178 (255)
T COG3836 115 PLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRAGLDNLDAIAAVEGVDGVFIGPAD 178 (255)
T ss_pred CCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHHHHHHHHHHHccCCCCeEEECHHH
Confidence 677888873 2233333322 1222367899999999999999887 5999874
No 130
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=37.50 E-value=49 Score=21.20 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=20.8
Q ss_pred eEEEeCHHHHHHHHHHHHHHhCcee
Q 037531 23 EVVRVTSNEAIQTAKLLGAKEGLLV 47 (106)
Q Consensus 23 ~~i~V~d~ea~~~~r~l~~~eGi~~ 47 (106)
+.+.+++++.+..+.+-.+++|+++
T Consensus 74 HtI~a~~~e~l~~I~~~L~~~G~L~ 98 (98)
T PF02829_consen 74 HTIEAPDEEDLDKIEEALKKKGFLY 98 (98)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT-B-
T ss_pred EEEEECCHHHHHHHHHHHHHCCCcC
Confidence 5688999999999999999999874
No 131
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=37.43 E-value=53 Score=21.36 Aligned_cols=20 Identities=45% Similarity=0.602 Sum_probs=10.6
Q ss_pred ceeeechHHHHHHHHHHHHH
Q 037531 45 LLVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 45 i~~G~Ssga~l~aa~~~a~~ 64 (106)
++.|.|+|.....+..++++
T Consensus 4 lItGa~~giG~~~a~~l~~~ 23 (167)
T PF00106_consen 4 LITGASSGIGRALARALARR 23 (167)
T ss_dssp EEETTTSHHHHHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHHHHhc
Confidence 34555555555555555543
No 132
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=37.25 E-value=48 Score=23.57 Aligned_cols=11 Identities=18% Similarity=0.099 Sum_probs=5.8
Q ss_pred CEEEEEeCCCC
Q 037531 70 KLIVVIFPSSG 80 (106)
Q Consensus 70 ~~Vv~i~~D~g 80 (106)
..+.++.+|-.
T Consensus 55 ~~v~~~~~Dl~ 65 (256)
T TIGR01500 55 LRVVRVSLDLG 65 (256)
T ss_pred ceEEEEEeccC
Confidence 34555556643
No 133
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=36.18 E-value=50 Score=27.04 Aligned_cols=45 Identities=16% Similarity=0.376 Sum_probs=37.8
Q ss_pred HhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 42 KEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 42 ~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
...|++|.|+|.+..-+.++.+.+...+..|-++++.++.++.+.
T Consensus 70 ~k~IllgVtGsIAayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p 114 (475)
T PRK13982 70 SKRVTLIIGGGIAAYKALDLIRRLKERGAHVRCVLTKAAQQFVTP 114 (475)
T ss_pred CCEEEEEEccHHHHHHHHHHHHHHHhCcCEEEEEECcCHHHHhhH
Confidence 446899999999988998888887656788999999999987765
No 134
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=35.75 E-value=40 Score=23.23 Aligned_cols=40 Identities=28% Similarity=0.320 Sum_probs=29.8
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHH
Q 037531 20 ILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61 (106)
Q Consensus 20 ~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~ 61 (106)
.+--++.|.+.++++..|.++ .|+.+-|.||--++..+.+
T Consensus 90 AvGlVVNV~t~~~L~~Lr~la--pgl~l~P~sgddLA~rL~l 129 (142)
T PF11072_consen 90 AVGLVVNVATEAALQRLRQLA--PGLPLLPVSGDDLARRLGL 129 (142)
T ss_pred CeEEEEecCCHHHHHHHHHHc--CCCeecCCCHHHHHHHhCC
Confidence 444567888888888888886 5888888888877655543
No 135
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=35.60 E-value=1.7e+02 Score=22.05 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHHhCc--eeeechHHHHHHHHHHHHH
Q 037531 28 TSNEAIQTAKLLGAKEGL--LVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eGi--~~G~Ssga~l~aa~~~a~~ 64 (106)
+.+.+...+++|..++++ ++|+++.....+...++++
T Consensus 51 ~p~~a~~~a~~li~~~~V~aiiG~~~s~~~~a~~~~~~~ 89 (360)
T cd06357 51 DPDAYRALAERLLREDGVRVIFGCYTSSSRKAVLPVVER 89 (360)
T ss_pred CHHHHHHHHHHHHhhCCCcEEEeCccHHHHHHHHHHHHh
Confidence 567899999999988876 7787666555566666654
No 136
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=35.52 E-value=56 Score=23.65 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=23.5
Q ss_pred CCCEEEEEeCCCCccccChhhcHHHHHHHhcCccc
Q 037531 68 AGKLIVVIFPSSGERYLSSEMFDAERQAAENMAYV 102 (106)
Q Consensus 68 ~~~~Vv~i~~D~g~kY~s~~~~~~~~~~~~~~~~~ 102 (106)
...++.++++++.+..++. +... ++..++|+++
T Consensus 69 ~~dtltVLLTGR~e~~F~~-lI~~-ml~s~~L~Fd 101 (197)
T PF10307_consen 69 DPDTLTVLLTGRRESKFSS-LIER-MLASKGLEFD 101 (197)
T ss_pred CCCeeEEEEeCCCchhHHH-HHHH-HHhcCCCCcc
Confidence 4568899999999865555 3333 5777888765
No 137
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=35.25 E-value=31 Score=27.37 Aligned_cols=43 Identities=19% Similarity=0.500 Sum_probs=33.2
Q ss_pred CceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 44 GLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 44 Gi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
.|++|.|++.+..-+.++.+.+...+..|-++++.++.+.++.
T Consensus 5 ~IllgiTGSiaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 5 KILLGVTGGIAAYKTVELVRELVRQGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred EEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHHH
Confidence 4778888887777788888777545678889999999887653
No 138
>PRK08576 hypothetical protein; Provisional
Probab=35.06 E-value=2.5e+02 Score=22.83 Aligned_cols=55 Identities=18% Similarity=0.272 Sum_probs=35.7
Q ss_pred CceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccChhhcHHHHHHHhcCcc
Q 037531 44 GLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAENMAY 101 (106)
Q Consensus 44 Gi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~~~~~~~~~~~~~~~~ 101 (106)
.+.++.|+|-==.+++.++.+.. + .+.+++.|+|..+..+.-+-+.+...-++++
T Consensus 236 rVvVafSGGKDStvLL~La~k~~--~-~V~aV~iDTG~e~pet~e~~~~lae~LGI~l 290 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAF--G-DVTAVYVDTGYEMPLTDEYVEKVAEKLGVDL 290 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhC--C-CCEEEEeCCCCCChHHHHHHHHHHHHcCCCE
Confidence 58999999987777777776642 2 3788888999765544333344444444443
No 139
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=34.91 E-value=45 Score=23.54 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=15.1
Q ss_pred HHHHHHHHHhCceeeechHHHHHHH
Q 037531 34 QTAKLLGAKEGLLVGISSGAAAAAA 58 (106)
Q Consensus 34 ~~~r~l~~~eGi~~G~Ssga~l~aa 58 (106)
+..++.+++-++++|.|.||.+++-
T Consensus 105 ~~i~~~~~~G~v~~G~SAGA~~~~~ 129 (210)
T cd03129 105 DAILKRVARGVVIGGTSAGAAVMGE 129 (210)
T ss_pred HHHHHHHHcCCeEEEcCHHHHHhhh
Confidence 3344455544577777777766554
No 140
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=34.88 E-value=78 Score=23.10 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=36.2
Q ss_pred hCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 43 EGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 43 eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
..|++|-+++-+..-+..+.+.+. ++..|-++++.++.|.++.
T Consensus 20 k~IllgVtGSIAAyk~~~lvr~L~-~g~~V~VvmT~~A~~FI~p 62 (209)
T PLN02496 20 PRILLAASGSVAAIKFGNLCHCFS-EWAEVRAVVTKASLHFIDR 62 (209)
T ss_pred CEEEEEEeCHHHHHHHHHHHHHhc-CCCeEEEEEChhHhhhcCH
Confidence 358999999988888888888875 5778999999999998874
No 141
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=34.62 E-value=50 Score=22.79 Aligned_cols=33 Identities=33% Similarity=0.492 Sum_probs=19.1
Q ss_pred ceeeechHHHHHHHHHHHHHhCCCCCEE-EEEeCCC
Q 037531 45 LLVGISSGAAAAAAIKIAKRAENAGKLI-VVIFPSS 79 (106)
Q Consensus 45 i~~G~Ssga~l~aa~~~a~~~~~~~~~V-v~i~~D~ 79 (106)
.++|.|.|+.+ |..+|+++...+..| .+++.|+
T Consensus 69 ~L~G~S~Gg~l--A~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 69 VLAGWSFGGIL--AFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp EEEEETHHHHH--HHHHHHHHHHTT-SESEEEEESC
T ss_pred eehccCccHHH--HHHHHHHHHHhhhccCceEEecC
Confidence 79999999976 444555443334433 3445553
No 142
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=34.59 E-value=36 Score=27.04 Aligned_cols=44 Identities=23% Similarity=0.546 Sum_probs=35.1
Q ss_pred hCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccCh
Q 037531 43 EGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 43 eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~ 86 (106)
..|++|.|++.+..-+.++.+.+...+..|-++++.++.+.++.
T Consensus 7 k~IllgvTGsiaa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 7 KRIVLGVSGGIAAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CeEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 45888888888877888888777556778999999999887764
No 143
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=33.47 E-value=45 Score=24.27 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=30.0
Q ss_pred ceeeech-HHHHHHHHHHHHHhCCC--CCEEEEEeCCCCccccCh
Q 037531 45 LLVGISS-GAAAAAAIKIAKRAENA--GKLIVVIFPSSGERYLSS 86 (106)
Q Consensus 45 i~~G~Ss-ga~l~aa~~~a~~~~~~--~~~Vv~i~~D~g~kY~s~ 86 (106)
|.+|.|| +.++..+.++.+.+... +..|-+++++++.+..+.
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 5677777 34545777777776433 567999999999887664
No 144
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=33.36 E-value=55 Score=22.60 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHHHHh------C-----CCCCEEEEEeCCCCccc
Q 037531 50 SSGAAAAAAIKIAKRA------E-----NAGKLIVVIFPSSGERY 83 (106)
Q Consensus 50 Ssga~l~aa~~~a~~~------~-----~~~~~Vv~i~~D~g~kY 83 (106)
.+|+++..|++.+.+. . ...++++++++|+-...
T Consensus 82 ~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~ 126 (198)
T cd01470 82 KTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNM 126 (198)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCC
Confidence 3567777777665321 0 11357899999986553
No 145
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=32.84 E-value=78 Score=23.29 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=21.3
Q ss_pred ceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Q 037531 45 LLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSS 79 (106)
Q Consensus 45 i~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~ 79 (106)
|.+|+++|... .+..+++.+...+-.|.++..+.
T Consensus 5 ~~~g~~~g~~~-~~~~La~~L~~~g~eV~vv~~~~ 38 (348)
T TIGR01133 5 LAAGGTGGHIF-PALAVAEELIKRGVEVLWLGTKR 38 (348)
T ss_pred EEeCccHHHHh-HHHHHHHHHHhCCCEEEEEeCCC
Confidence 56788877766 66677777643455555555444
No 146
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=32.11 E-value=54 Score=18.66 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=14.0
Q ss_pred eCHHHHHHHHHHHHHHh
Q 037531 27 VTSNEAIQTAKLLGAKE 43 (106)
Q Consensus 27 V~d~ea~~~~r~l~~~e 43 (106)
=+-+||++.++.++++.
T Consensus 26 ~Tk~eAi~~Ar~~a~~~ 42 (62)
T PF09954_consen 26 DTKAEAIEAARELAKNQ 42 (62)
T ss_pred CcHHHHHHHHHHHHHhC
Confidence 36789999999998875
No 147
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=32.09 E-value=38 Score=22.73 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=13.0
Q ss_pred HHHHHHHHHhCceeeechHHHH
Q 037531 34 QTAKLLGAKEGLLVGISSGAAA 55 (106)
Q Consensus 34 ~~~r~l~~~eGi~~G~Ssga~l 55 (106)
+..++..++-++++|.|+||.+
T Consensus 60 ~~i~~~~~~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 60 EAIREAYRKGGVIIGTSAGAMI 81 (154)
T ss_dssp HHHHHHHHTTSEEEEETHHHHC
T ss_pred HHHHHHHHCCCEEEEEChHHhh
Confidence 3444555443477777777755
No 148
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=31.70 E-value=1.2e+02 Score=21.93 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccChhhcHHHHHHHhc
Q 037531 28 TSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAEN 98 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~~~~~~~~~~~~~ 98 (106)
+..+.++.+...+ -..+.+..|.|.-=++.+.++.+.. ...+-+++.|+|..+..|.-|-+.+...=+
T Consensus 12 ~~~~~l~~~~~~~-~~~~~~s~S~Gkds~VlL~l~~~~~--~~~i~vv~vDTg~~fpET~e~~d~~~~~~~ 79 (226)
T TIGR02057 12 TPQEIIAWSIVTF-PHGLVQTSAFGIQALVTLHLLSSIS--EPMIPVIFIDTLYHFPQTLTLKDELTKKYY 79 (226)
T ss_pred CHHHHHHHHHHHc-CCCEEEEecCCHHHHHHHHHHHHhh--CCCCCEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 4445544443322 2357888887877778888887652 135778999999999999767666655445
No 149
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.04 E-value=1.1e+02 Score=17.77 Aligned_cols=43 Identities=30% Similarity=0.399 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhCceeeechHHHHH-HHHHHHHHhCCCCCEEEEEeCC
Q 037531 30 NEAIQTAKLLGAKEGLLVGISSGAAAA-AAIKIAKRAENAGKLIVVIFPS 78 (106)
Q Consensus 30 ~ea~~~~r~l~~~eGi~~G~Ssga~l~-aa~~~a~~~~~~~~~Vv~i~~D 78 (106)
.+|+.....|..+ |-|||-+++ .|..+.+... ...+.+..|-|
T Consensus 14 Q~AVE~Iq~lMae-----GmSsGEAIa~VA~elRe~hk-~~~~~~~~fed 57 (60)
T COG3140 14 QKAVERIQELMAE-----GMSSGEAIALVAQELRENHK-GENRIVARFED 57 (60)
T ss_pred HHHHHHHHHHHHc-----cccchhHHHHHHHHHHHHhc-ccccccccccc
Confidence 4577777777764 556766654 3444444432 23355555554
No 150
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=30.39 E-value=1.1e+02 Score=22.22 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=33.8
Q ss_pred cCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhC
Q 037531 18 VSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE 66 (106)
Q Consensus 18 ~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~ 66 (106)
-.+++.--.+++. ..++.+++ ++.|+.+..+||-.+..+.++.+++.
T Consensus 11 GTLl~~~~~i~~~-~~~ai~~l-~~~G~~~~iaTGR~~~~~~~~~~~l~ 57 (272)
T PRK15126 11 GTLLMPDHHLGEK-TLSTLARL-RERDITLTFATGRHVLEMQHILGALS 57 (272)
T ss_pred CcCcCCCCcCCHH-HHHHHHHH-HHCCCEEEEECCCCHHHHHHHHHHcC
Confidence 3444433345554 56677776 56799999999999999998888764
No 151
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=30.24 E-value=51 Score=21.58 Aligned_cols=38 Identities=29% Similarity=0.314 Sum_probs=25.0
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHH
Q 037531 20 ILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAI 59 (106)
Q Consensus 20 ~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~ 59 (106)
.+--++.|.+.++++..|.++ .|+-.-|.||--++..+
T Consensus 52 AvGlVVnV~t~~~l~~Lr~la--pgl~l~P~sgddLa~rL 89 (105)
T TIGR03765 52 AVGLVVNVETAAALQRLRALA--PGLPLLPVSGDDLAERL 89 (105)
T ss_pred CeEEEEecCCHHHHHHHHHHc--CCCcccCCCHHHHHHHh
Confidence 344456777777777777776 46777777777665544
No 152
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=29.79 E-value=1.6e+02 Score=23.38 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhC----ceeeechHHHHHHHH
Q 037531 30 NEAIQTAKLLGAKEG----LLVGISSGAAAAAAI 59 (106)
Q Consensus 30 ~ea~~~~r~l~~~eG----i~~G~Ssga~l~aa~ 59 (106)
.|+++.-+.|.+.+| +++|=|+|++|+..+
T Consensus 179 ~qlv~~Y~~Lv~~~G~~nI~LmGDSAGGnL~Ls~ 212 (374)
T PF10340_consen 179 RQLVATYDYLVESEGNKNIILMGDSAGGNLALSF 212 (374)
T ss_pred HHHHHHHHHHHhccCCCeEEEEecCccHHHHHHH
Confidence 588888899998888 699999999987664
No 153
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=29.51 E-value=1.8e+02 Score=22.84 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=32.7
Q ss_pred eCHHHHHHHHHHHHHHhCc-----eeeechHHHHHHHHHHHHHhCCCCCEEEEEeC
Q 037531 27 VTSNEAIQTAKLLGAKEGL-----LVGISSGAAAAAAIKIAKRAENAGKLIVVIFP 77 (106)
Q Consensus 27 V~d~ea~~~~r~l~~~eGi-----~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~ 77 (106)
++-++..+....+.++.|+ ++|.|=|+.. ++.++.+.+..=+.+|++.+
T Consensus 141 ~t~~d~~~~~~~ll~~lgi~~~~~vvG~SmGG~i--al~~a~~~P~~v~~lv~ia~ 194 (389)
T PRK06765 141 VTILDFVRVQKELIKSLGIARLHAVMGPSMGGMQ--AQEWAVHYPHMVERMIGVIG 194 (389)
T ss_pred CcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHH--HHHHHHHChHhhheEEEEec
Confidence 6777777888888888775 6899998844 55566554322345555544
No 154
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=29.36 E-value=2.2e+02 Score=21.57 Aligned_cols=51 Identities=10% Similarity=-0.014 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhCc--------------eeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Q 037531 29 SNEAIQTAKLLGAKEGL--------------LVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSG 80 (106)
Q Consensus 29 d~ea~~~~r~l~~~eGi--------------~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g 80 (106)
-++.-+....++++.++ +.+..+|.|+.+.++..+... -+..|+.++||..
T Consensus 63 ~~~L~~~L~~l~~~l~l~i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~-~~~~i~~visn~~ 127 (286)
T PRK13011 63 EDALRAGFAPIAARFGMQWELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGE-LPMDIVGVVSNHP 127 (286)
T ss_pred HHHHHHHHHHHHHHhCcEEEEeecccCceEEEEEcCCcccHHHHHHHHHcCC-CCcEEEEEEECCc
Confidence 45555566777777663 445667999999988877653 2568999999864
No 155
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=29.18 E-value=2.2e+02 Score=21.79 Aligned_cols=36 Identities=31% Similarity=0.235 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHhCc--eeeechHHHHHHHHHHHHH
Q 037531 28 TSNEAIQTAKLLGAKEGL--LVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eGi--~~G~Ssga~l~aa~~~a~~ 64 (106)
+.+++.+.+++|.+ +|+ ++|+.+.....+...++++
T Consensus 44 ~p~~a~~~a~~Li~-~~V~~vvG~~~S~~~~Av~~~a~~ 81 (347)
T TIGR03863 44 TPEDLVAALKALLA-QGVRFFVLDLPAAALLALADAAKA 81 (347)
T ss_pred CHHHHHHHHHHHHH-CCCCEEEecCChHHHHHHHHHHHh
Confidence 68889999999985 664 4454433444455566654
No 156
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=29.09 E-value=2e+02 Score=19.94 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=13.2
Q ss_pred ceeeechHHHHHHHHHHHHHh
Q 037531 45 LLVGISSGAAAAAAIKIAKRA 65 (106)
Q Consensus 45 i~~G~Ssga~l~aa~~~a~~~ 65 (106)
+++|.|-|+.++. .++...
T Consensus 98 ~lvG~S~Gg~~a~--~~a~~~ 116 (278)
T TIGR03056 98 GVIGHSAGAAIAL--RLALDG 116 (278)
T ss_pred eEEEECccHHHHH--HHHHhC
Confidence 7899999986544 445544
No 157
>PRK07952 DNA replication protein DnaC; Validated
Probab=29.03 E-value=1.1e+02 Score=22.53 Aligned_cols=33 Identities=6% Similarity=0.015 Sum_probs=21.0
Q ss_pred CCCCcCcccCccCeEEEeCHH--HHHHHHHHHHHH
Q 037531 10 GFVPSVLDVSILDEVVRVTSN--EAIQTAKLLGAK 42 (106)
Q Consensus 10 ~~~p~~~~~~~vD~~i~V~d~--ea~~~~r~l~~~ 42 (106)
+-+|+.+-..-+|....-++. .|+..++.+++.
T Consensus 60 s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~ 94 (244)
T PRK07952 60 SGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE 94 (244)
T ss_pred cCCCccccCCccccccCCCchHHHHHHHHHHHHHh
Confidence 345666555566666554544 488888888864
No 158
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=28.96 E-value=1.6e+02 Score=18.74 Aligned_cols=16 Identities=0% Similarity=0.111 Sum_probs=11.7
Q ss_pred CCCEEEEEeCCCCccc
Q 037531 68 AGKLIVVIFPSSGERY 83 (106)
Q Consensus 68 ~~~~Vv~i~~D~g~kY 83 (106)
...+++++++|+-...
T Consensus 102 ~~~~~iiliTDG~~~~ 117 (161)
T cd01450 102 NVPKVIIVLTDGRSDD 117 (161)
T ss_pred CCCeEEEEECCCCCCC
Confidence 3467999999986554
No 159
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=28.94 E-value=1.8e+02 Score=19.89 Aligned_cols=30 Identities=7% Similarity=0.058 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHh-CCCCCEEEEEeCCCCc
Q 037531 52 GAAAAAAIKIAKRA-ENAGKLIVVIFPSSGE 81 (106)
Q Consensus 52 ga~l~aa~~~a~~~-~~~~~~Vv~i~~D~g~ 81 (106)
+.++..+.+..... .....+++++++|+-.
T Consensus 91 ~~AL~~a~~~l~~~~~~~~~~~iillTDG~~ 121 (186)
T cd01480 91 DCALKYATEQLLEGSHQKENKFLLVITDGHS 121 (186)
T ss_pred HHHHHHHHHHHhccCCCCCceEEEEEeCCCc
Confidence 44444444444321 1234689999999854
No 160
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=28.75 E-value=1.4e+02 Score=21.91 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHHhCc--eeeechHHHHHHHHHHHHH
Q 037531 28 TSNEAIQTAKLLGAKEGL--LVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eGi--~~G~Ssga~l~aa~~~a~~ 64 (106)
+.+.+.+.+++|..++|+ ++|+.+.....++...+++
T Consensus 55 ~~~~a~~~~~~li~~~~v~aviG~~~s~~~~a~~~~~~~ 93 (345)
T cd06338 55 NPARAARAYERLITQDKVDFLLGPYSSGLTLAAAPVAEK 93 (345)
T ss_pred CHHHHHHHHHHHHhhcCccEEecCCcchhHHHHHHHHHH
Confidence 566889999999988774 6787654444455555554
No 161
>PRK08452 flagellar protein FlaG; Provisional
Probab=28.71 E-value=66 Score=21.59 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=21.1
Q ss_pred CeEE-EeCHHHHHHHHHHHHHHhCcee
Q 037531 22 DEVV-RVTSNEAIQTAKLLGAKEGLLV 47 (106)
Q Consensus 22 D~~i-~V~d~ea~~~~r~l~~~eGi~~ 47 (106)
+++| .+|.+++++.+..+.+--|+++
T Consensus 94 ~eVIRqIP~Ee~L~l~~~m~e~~GlL~ 120 (124)
T PRK08452 94 GKVIREIPSKEAIELMEYMRDVIGIIF 120 (124)
T ss_pred CceeeeCCCHHHHHHHHHHHHhhhhee
Confidence 3444 4899999999999999888764
No 162
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=28.60 E-value=2.2e+02 Score=22.33 Aligned_cols=57 Identities=26% Similarity=0.375 Sum_probs=43.7
Q ss_pred eEEEeCHHHHHHHHHHHHHHhCceeeec-hHHHHHHHHHHHHHhCC-CCCEEEEEeCCC
Q 037531 23 EVVRVTSNEAIQTAKLLGAKEGLLVGIS-SGAAAAAAIKIAKRAEN-AGKLIVVIFPSS 79 (106)
Q Consensus 23 ~~i~V~d~ea~~~~r~l~~~eGi~~G~S-sga~l~aa~~~a~~~~~-~~~~Vv~i~~D~ 79 (106)
.-..++.+|-++..+.+++.|||..=|= +|-++.+.+.++++... ++..|+.|=.++
T Consensus 254 ~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~f~~~~~vLfiHtGG 312 (323)
T COG2515 254 PGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGEFPDGSPVLFIHTGG 312 (323)
T ss_pred CccCCcCHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHhcccCCCCCceEEEEcCC
Confidence 3356788999999999999999988774 67789999999976542 345577666554
No 163
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=28.52 E-value=1.9e+02 Score=21.39 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=26.9
Q ss_pred eCHHHHHHHHHHHHHHhCc--eeeechHHHHHHHHHHHHH
Q 037531 27 VTSNEAIQTAKLLGAKEGL--LVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 27 V~d~ea~~~~r~l~~~eGi--~~G~Ssga~l~aa~~~a~~ 64 (106)
-+...+.+.+++|..++++ ++|+.+.....++..++++
T Consensus 49 ~~~~~a~~~a~~l~~~~~v~~viG~~~s~~~~a~~~~~~~ 88 (350)
T cd06366 49 CDPVQAASAALDLLENKPVVAIIGPQCSSVAEFVAEVANE 88 (350)
T ss_pred CCHHHHHHHHHHHhccCCceEEECCCcHHHHHHHHHHhhc
Confidence 4667899999999987775 7787655554455566654
No 164
>PLN03172 chalcone synthase family protein; Provisional
Probab=28.24 E-value=1.7e+02 Score=23.13 Aligned_cols=66 Identities=20% Similarity=0.202 Sum_probs=39.7
Q ss_pred cccCccCeEEEeCHH--HHHHHHHHHHHHhCc-------eeeechHHHHHHHHHHHHHhC--CCCCEEEEEeCCCCc
Q 037531 16 LDVSILDEVVRVTSN--EAIQTAKLLGAKEGL-------LVGISSGAAAAAAIKIAKRAE--NAGKLIVVIFPSSGE 81 (106)
Q Consensus 16 ~~~~~vD~~i~V~d~--ea~~~~r~l~~~eGi-------~~G~Ssga~l~aa~~~a~~~~--~~~~~Vv~i~~D~g~ 81 (106)
++.+.||.++.+|.- +.=.....++++.|+ +....+.++...+++.+..+- .+.++|++|.++.-.
T Consensus 119 ~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S 195 (393)
T PLN03172 119 QPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKPSVKRFMMYQQGCFAGGTVLRLAKDLAENNAGSRVLVVCSEITA 195 (393)
T ss_pred CCHHHCCEEEEEccCCCcCchHHHHHHHHhCCCCCceEEeeeCCchHHHHHHHHHHHHHHHcCCCCeEEEEEEehhh
Confidence 345677877666422 233444455555554 444566666667777776542 246789999888755
No 165
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=27.97 E-value=47 Score=22.87 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=34.4
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhC
Q 037531 20 ILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE 66 (106)
Q Consensus 20 ~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~ 66 (106)
+++.--.++ ++..++++.|. +.|+.+..+||-....+.++.++..
T Consensus 9 Ll~~~~~i~-~~~~~al~~l~-~~g~~~~i~TGR~~~~~~~~~~~~~ 53 (254)
T PF08282_consen 9 LLNSDGKIS-PETIEALKELQ-EKGIKLVIATGRSYSSIKRLLKELG 53 (254)
T ss_dssp TCSTTSSSC-HHHHHHHHHHH-HTTCEEEEECSSTHHHHHHHHHHTT
T ss_pred eecCCCeeC-HHHHHHHHhhc-ccceEEEEEccCccccccccccccc
Confidence 444333455 67778888775 4799999999999999999998763
No 166
>PRK05114 hypothetical protein; Provisional
Probab=27.81 E-value=1.3e+02 Score=17.57 Aligned_cols=43 Identities=33% Similarity=0.430 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhCceeeechHHHHH-HHHHHHHHhCCCCCEEEEEeCCC
Q 037531 30 NEAIQTAKLLGAKEGLLVGISSGAAAA-AAIKIAKRAENAGKLIVVIFPSS 79 (106)
Q Consensus 30 ~ea~~~~r~l~~~eGi~~G~Ssga~l~-aa~~~a~~~~~~~~~Vv~i~~D~ 79 (106)
.+|+.....|..+ |-|||-+++ .|.++.++. .+..++..|-|.
T Consensus 14 Q~AVErIq~LMaq-----GmSsgEAI~~VA~eiRe~~--~~~~~~~~f~de 57 (59)
T PRK05114 14 QKAVERIQELMAQ-----GMSSGEAIALVAEELRANH--QGERIVARFEDE 57 (59)
T ss_pred HHHHHHHHHHHHc-----cccHHHHHHHHHHHHHHHH--hccccccccccc
Confidence 4677778888775 667777654 445555554 234666665543
No 167
>PRK10976 putative hydrolase; Provisional
Probab=27.75 E-value=1.4e+02 Score=21.44 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=35.2
Q ss_pred ccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhC
Q 037531 17 DVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE 66 (106)
Q Consensus 17 ~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~ 66 (106)
|-.+++.--.+++. ..++.+++ ++.|+.+..+||-.+..+.++.+++.
T Consensus 10 DGTLl~~~~~is~~-~~~ai~~l-~~~G~~~~iaTGR~~~~~~~~~~~l~ 57 (266)
T PRK10976 10 DGTLLSPDHTLSPY-AKETLKLL-TARGIHFVFATGRHHVDVGQIRDNLE 57 (266)
T ss_pred CCCCcCCCCcCCHH-HHHHHHHH-HHCCCEEEEEcCCChHHHHHHHHhcC
Confidence 44455544456654 56777776 56799999999999999988888763
No 168
>PRK10162 acetyl esterase; Provisional
Probab=27.37 E-value=1.5e+02 Score=22.20 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHH---HHhC------ceeeechHHHHHHHHHH
Q 037531 29 SNEAIQTAKLLG---AKEG------LLVGISSGAAAAAAIKI 61 (106)
Q Consensus 29 d~ea~~~~r~l~---~~eG------i~~G~Ssga~l~aa~~~ 61 (106)
-+|+.++.+.+. ++.| +++|-|.|++++++.-+
T Consensus 132 ~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~ 173 (318)
T PRK10162 132 IEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASAL 173 (318)
T ss_pred HHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHH
Confidence 455665555553 3334 57899999998877544
No 169
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=27.17 E-value=60 Score=23.90 Aligned_cols=46 Identities=24% Similarity=0.402 Sum_probs=26.9
Q ss_pred HHHHHHHH--hCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 35 TAKLLGAK--EGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 35 ~~r~l~~~--eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
.+..+++. .+|++|+|.+...-...++.+..+... .=+++++.+..
T Consensus 19 ~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~-lPvilfp~~~~ 66 (223)
T TIGR01768 19 IAKAAAESGTDAILIGGSQGVTYEKTDTLIEALRRYG-LPIILFPSNPT 66 (223)
T ss_pred HHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHhccC-CCEEEeCCCcc
Confidence 34445444 789999999886655555544442112 33444776554
No 170
>PRK07738 flagellar protein FlaG; Provisional
Probab=27.16 E-value=83 Score=20.91 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=21.7
Q ss_pred CeEE-EeCHHHHHHHHHHHHHHhCcee
Q 037531 22 DEVV-RVTSNEAIQTAKLLGAKEGLLV 47 (106)
Q Consensus 22 D~~i-~V~d~ea~~~~r~l~~~eGi~~ 47 (106)
+++| .++.+++++.+..+.+--|+++
T Consensus 87 ~EVIRQIPpEe~L~l~~~m~e~~GlLv 113 (117)
T PRK07738 87 NEVIREIPPKKLLDMYAAMMEFVGLLV 113 (117)
T ss_pred CeeeeeCCCHHHHHHHHHHHHHhccee
Confidence 3444 5999999999999999988875
No 171
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=27.05 E-value=2e+02 Score=21.57 Aligned_cols=48 Identities=15% Similarity=-0.000 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHhC---ceeeechHHHHHHHHHHHHHhCCCCCEEEEE
Q 037531 28 TSNEAIQTAKLLGAKEG---LLVGISSGAAAAAAIKIAKRAENAGKLIVVI 75 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eG---i~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i 75 (106)
.+.+|...+++++++.. .++..-.=+|++.|++...+....=+.|+++
T Consensus 97 ~~~~a~~~i~~~~~~~~~evtiva~GPLTNlA~al~~~P~~~~~ik~iviM 147 (302)
T cd02651 97 EDIHAVDAIIDTLRASPEPITLVATGPLTNIALLLRKYPELAERIKEIVLM 147 (302)
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHChhhHhhcCEEEEe
Confidence 45678888888888754 3555555678888887755442223456655
No 172
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=26.98 E-value=1.1e+02 Score=23.08 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHhCc--eeeec-hHHHHHHHHHHHHH
Q 037531 28 TSNEAIQTAKLLGAKEGL--LVGIS-SGAAAAAAIKIAKR 64 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eGi--~~G~S-sga~l~aa~~~a~~ 64 (106)
+.+.+.+.+++|..++++ ++|+. |+.++ ++...+++
T Consensus 53 ~p~~a~~~a~~li~~d~v~~iiG~~~s~~~~-a~~~~~~~ 91 (357)
T cd06337 53 NPNRAGLVAQELILTDKVDLLLAGGTPDTTN-PVSDQCEA 91 (357)
T ss_pred CHHHHHHHHHHHHhccCccEEEecCCcchhh-HHHHHHHH
Confidence 668899999999988775 56654 44444 44455544
No 173
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=26.76 E-value=1.5e+02 Score=21.74 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHHhCc--eeeechHHHHHHHHHHHHH
Q 037531 28 TSNEAIQTAKLLGAKEGL--LVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eGi--~~G~Ssga~l~aa~~~a~~ 64 (106)
+.+.+.+++++|.+.+|+ ++|+.+.....++..++++
T Consensus 51 ~p~~a~~~a~~Li~~~~V~aiiG~~~s~~~~a~~~~~~~ 89 (333)
T cd06331 51 DPAFAAKAARRLIRDDKVDAVFGCYTSASRKAVLPVVER 89 (333)
T ss_pred CHHHHHHHHHHHHhccCCcEEEecccHHHHHHHHHHHHh
Confidence 567899999999987775 6787666655556666654
No 174
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=26.75 E-value=1.4e+02 Score=22.31 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHHhCc--eeeechHHHHHHHHHHHHH
Q 037531 28 TSNEAIQTAKLLGAKEGL--LVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eGi--~~G~Ssga~l~aa~~~a~~ 64 (106)
+.+.+...+++|.+.+++ ++|+.+.....++...+++
T Consensus 58 ~~~~a~~~a~~li~~~~v~avvG~~~s~~~~~~~~~~~~ 96 (362)
T cd06343 58 SPPKTVEQTRKLVESDEVFAMVGGLGTPTNLAVQKYLNE 96 (362)
T ss_pred ChHHHHHHHHHHHhhcCeEEEEecCCcHHHHHhHHHHHh
Confidence 456788899999988885 5576544444455555543
No 175
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=26.51 E-value=46 Score=22.95 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=20.9
Q ss_pred CEEEEEeCCCCccccChhhcHHHHHHHhc
Q 037531 70 KLIVVIFPSSGERYLSSEMFDAERQAAEN 98 (106)
Q Consensus 70 ~~Vv~i~~D~g~kY~s~~~~~~~~~~~~~ 98 (106)
+.=|+-+|++ .+|+|+.||-.-+..++|
T Consensus 16 ~~rViNLcrs-y~Yls~GYY~SLLAEARg 43 (153)
T PF14401_consen 16 RTRVINLCRS-YRYLSEGYYCSLLAEARG 43 (153)
T ss_pred CceEEEecCC-ccccCcceeeeHHHHHcC
Confidence 3556668988 999999999765555544
No 176
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=26.30 E-value=74 Score=22.78 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=14.9
Q ss_pred HHHHHHHHHhCceeeechHHHHHHH
Q 037531 34 QTAKLLGAKEGLLVGISSGAAAAAA 58 (106)
Q Consensus 34 ~~~r~l~~~eGi~~G~Ssga~l~aa 58 (106)
+..+...++-++.+|.|.||++++-
T Consensus 108 ~~l~~~~~~G~v~~G~SAGA~i~~~ 132 (217)
T cd03145 108 DALRKVYRGGVVIGGTSAGAAVMSD 132 (217)
T ss_pred HHHHHHHHcCCEEEEccHHHHhhhh
Confidence 3445555554567777777766543
No 177
>PF02995 DUF229: Protein of unknown function (DUF229); InterPro: IPR004245 Members of this family are uncharacterised with a long conserved region that may contain several domains.
Probab=26.20 E-value=92 Score=25.41 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=15.0
Q ss_pred CCEEEEEeCCCCccccC
Q 037531 69 GKLIVVIFPSSGERYLS 85 (106)
Q Consensus 69 ~~~Vv~i~~D~g~kY~s 85 (106)
+.++|++++|+|.||-+
T Consensus 332 ~nT~vi~~SDHG~R~g~ 348 (497)
T PF02995_consen 332 DNTFVIFMSDHGLRFGS 348 (497)
T ss_pred cccEEEEEcCCCcccCc
Confidence 46999999999999865
No 178
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=26.19 E-value=86 Score=17.50 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=15.6
Q ss_pred EeCHHHHHHHHHHHHHHhCcee
Q 037531 26 RVTSNEAIQTAKLLGAKEGLLV 47 (106)
Q Consensus 26 ~V~d~ea~~~~r~l~~~eGi~~ 47 (106)
.++.++|+...+..+.+.|.-+
T Consensus 27 g~~e~~A~~~Lr~~Am~~~~~l 48 (56)
T PF03861_consen 27 GLSEDEAYRLLRRQAMRRRRSL 48 (56)
T ss_dssp T--HHHHHHHHHHHHHHCTS-H
T ss_pred CcCHHHHHHHHHHHHHHcCCCH
Confidence 3688899999999888877654
No 179
>PLN02347 GMP synthetase
Probab=26.03 E-value=1.4e+02 Score=24.74 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH-HhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccc
Q 037531 31 EAIQTAKLLGA-KEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERY 83 (106)
Q Consensus 31 ea~~~~r~l~~-~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY 83 (106)
+.++..+.... +..++++.|+|.==..+..++.+. -+.++.+++.|+|..=
T Consensus 217 ~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~a--lG~~v~av~id~g~~~ 268 (536)
T PLN02347 217 EQIELIKATVGPDEHVICALSGGVDSTVAATLVHKA--IGDRLHCVFVDNGLLR 268 (536)
T ss_pred HHHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHH--hCCcEEEEEEeCCCCC
Confidence 45566666666 344999999997655555566552 1468999999998753
No 180
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=25.99 E-value=2.1e+02 Score=22.43 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHH-hCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCC-----------CCccccChhhcHHHHHHHh
Q 037531 30 NEAIQTAKLLGAK-EGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPS-----------SGERYLSSEMFDAERQAAE 97 (106)
Q Consensus 30 ~ea~~~~r~l~~~-eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D-----------~g~kY~s~~~~~~~~~~~~ 97 (106)
.+|.+-.+...++ .-+|+|.+|...-.+.+++...+.+.+-.=|+|-++ .+..|......+|..+..+
T Consensus 41 ~eA~~I~~~m~~~~~tvfl~~tg~~vssGlR~iia~LIr~~~idvvVTTgg~l~hDi~~~lg~~~~~G~~~~dD~~Lr~~ 120 (318)
T COG1899 41 AEAVEILREMLESRVTVFLGLTGNLVSSGLREIIADLIRNGLIDVVVTTGGNLDHDIIKALGGPHYCGSFEVDDVELREE 120 (318)
T ss_pred HHHHHHHHHHHhhcCEEEEeccccccchhHHHHHHHHHHcCCeEEEEecCCchhHHHHHHcCCCeeccCcCCCHHHHHHh
Confidence 4666666666555 458999999888888888887775333333333333 2244555555567777777
Q ss_pred cCc
Q 037531 98 NMA 100 (106)
Q Consensus 98 ~~~ 100 (106)
++.
T Consensus 121 gi~ 123 (318)
T COG1899 121 GIN 123 (318)
T ss_pred ccc
Confidence 765
No 181
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=25.48 E-value=1.8e+02 Score=23.85 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=35.0
Q ss_pred ceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccChhhcHHHHHHHhcCcc
Q 037531 45 LLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAENMAY 101 (106)
Q Consensus 45 i~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~~~~~~~~~~~~~~~~ 101 (106)
+.+..| |+-=++.+.++.+.. ..+-+++.|+|..+..|+-|-+.+...=++++
T Consensus 118 iavasS-G~edsvLlhl~~~~~---~~ipV~flDTG~lFpETy~~~d~v~~~ygl~l 170 (463)
T TIGR00424 118 IAIAFS-GAEDVALIEYAHLTG---RPFRVFSLDTGRLNPETYRFFDAVEKQYGIRI 170 (463)
T ss_pred EEEEec-cHHHHHHHHHHHHhC---CCCcEEEecCCCCCHHHHHHHHHHHHHhCCce
Confidence 566666 443345677776642 24678889999999999777676655444443
No 182
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=25.15 E-value=3.1e+02 Score=22.35 Aligned_cols=58 Identities=17% Similarity=0.134 Sum_probs=35.1
Q ss_pred HHHHHHHHHhC--ceeeechHHHHHHHHHHH----HHhCC--CCCEEEEEeCCCCccccChhhcHH
Q 037531 34 QTAKLLGAKEG--LLVGISSGAAAAAAIKIA----KRAEN--AGKLIVVIFPSSGERYLSSEMFDA 91 (106)
Q Consensus 34 ~~~r~l~~~eG--i~~G~Ssga~l~aa~~~a----~~~~~--~~~~Vv~i~~D~g~kY~s~~~~~~ 91 (106)
+.+++++...+ ..+|-|+|=-=.+++.++ ..++. ..+.|.+|++|+|.-...+.-|-+
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v~ 68 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWVN 68 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHHH
Confidence 45566665445 488988874433333333 22321 235799999999988776644543
No 183
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=24.91 E-value=68 Score=20.25 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=19.5
Q ss_pred CeE-EEeCHHHHHHHHHHHHHHhCcee
Q 037531 22 DEV-VRVTSNEAIQTAKLLGAKEGLLV 47 (106)
Q Consensus 22 D~~-i~V~d~ea~~~~r~l~~~eGi~~ 47 (106)
+++ -.++.++++..++.|.+-.|+++
T Consensus 78 ~eVIRqIP~Ee~l~l~~~l~e~~Gll~ 104 (107)
T PF03646_consen 78 GEVIRQIPPEELLDLAKRLRELVGLLV 104 (107)
T ss_dssp -SEEEEE-HHHHHHHHHHHHHHHHHHS
T ss_pred CcEEEeCCcHHHHHHHHHHHHHhceee
Confidence 344 56999999999999988777654
No 184
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=24.49 E-value=1.6e+02 Score=22.14 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHhCc--eeeechHHHHHHHHHHHHH
Q 037531 28 TSNEAIQTAKLLGAKEGL--LVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eGi--~~G~Ssga~l~aa~~~a~~ 64 (106)
+.+.+.+.+++|..++|+ ++|+.+.....++...+++
T Consensus 52 ~p~~a~~~a~~Lv~~~~V~~iiG~~~S~~~~a~~~~~~~ 90 (359)
T TIGR03407 52 DWPTFAEKARKLITQDKVAAVFGCWTSASRKAVLPVFEE 90 (359)
T ss_pred CHHHHHHHHHHHHhhCCCcEEEcCCcHHHHHHHHHHHhc
Confidence 567899999999988775 6786544444455555543
No 185
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=24.35 E-value=96 Score=22.72 Aligned_cols=38 Identities=26% Similarity=0.544 Sum_probs=22.3
Q ss_pred HHhCceeeechHH--HHHHHHHHHHHhCCCCCEEEEEeCCCC
Q 037531 41 AKEGLLVGISSGA--AAAAAIKIAKRAENAGKLIVVIFPSSG 80 (106)
Q Consensus 41 ~~eGi~~G~Ssga--~l~aa~~~a~~~~~~~~~Vv~i~~D~g 80 (106)
-...|++|+|.+. .+--..++.++.. + ..-++++|.+-
T Consensus 25 gtdai~vGGS~~v~~~~~~~~~~ik~~~-~-~~Pvilfp~~~ 64 (219)
T cd02812 25 GTDAIMVGGSDGVSSTLDNVVRLIKRIR-R-PVPVILFPSNP 64 (219)
T ss_pred CCCEEEECCccchhhhHHHHHHHHHHhc-C-CCCEEEeCCCc
Confidence 3578999999998 4444444444432 1 24455566543
No 186
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=24.26 E-value=1.7e+02 Score=21.91 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHhCc--eeeechHHHHHHHHHHHHH
Q 037531 28 TSNEAIQTAKLLGAKEGL--LVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eGi--~~G~Ssga~l~aa~~~a~~ 64 (106)
+.+++.+.+++|..++++ ++|+.+.....++..++++
T Consensus 51 ~p~~a~~~a~~Li~~~~V~~iiG~~~S~~~~a~~~~~~~ 89 (348)
T cd06355 51 DWPTFAEKARKLLTQDKVAAVFGCWTSASRKAVLPVFER 89 (348)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeccchhhHHHHHHHHhc
Confidence 557899999999987775 6676544444455555554
No 187
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=24.03 E-value=1.2e+02 Score=21.71 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=19.1
Q ss_pred echHHHHHHHHHHHHHhCC-C--CCEEEEEeCCC
Q 037531 49 ISSGAAAAAAIKIAKRAEN-A--GKLIVVIFPSS 79 (106)
Q Consensus 49 ~Ssga~l~aa~~~a~~~~~-~--~~~Vv~i~~D~ 79 (106)
..+|+.+..+++.+.+... + ..+.|+|++|.
T Consensus 126 ~~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg 159 (222)
T PF05762_consen 126 FGGGTDIGQALREFLRQYARPDLRRTTVVIISDG 159 (222)
T ss_pred CCCccHHHHHHHHHHHHhhcccccCcEEEEEecc
Confidence 4455666666655543311 2 36899999996
No 188
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=23.77 E-value=1.6e+02 Score=22.48 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=22.5
Q ss_pred hCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Q 037531 43 EGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSG 80 (106)
Q Consensus 43 eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g 80 (106)
+.++++++|-.++.+++.... .+++.|++..+|..
T Consensus 72 e~ilv~~gg~~a~~~~~~al~---~~gd~Vli~~~d~p 106 (346)
T TIGR03576 72 EKILVFNRTSSAILATILALE---PPGRKVVHYLPEKP 106 (346)
T ss_pred ceEEEECCHHHHHHHHHHHhC---CCCCEEEECCCCCC
Confidence 456778877776666665432 25778877667754
No 189
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=23.66 E-value=1.1e+02 Score=24.28 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=34.3
Q ss_pred EeCHHHHHHHHHHHHHHhCc-----eeeechHHHHHHHHHHHHHhCCCCCEEEEEeC
Q 037531 26 RVTSNEAIQTAKLLGAKEGL-----LVGISSGAAAAAAIKIAKRAENAGKLIVVIFP 77 (106)
Q Consensus 26 ~V~d~ea~~~~r~l~~~eGi-----~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~ 77 (106)
.++=+|.+++.+.|.++.|| ++|+|=|. .-+++++...+..=++++.|.+
T Consensus 126 ~~ti~D~V~aq~~ll~~LGI~~l~avvGgSmGG--MqaleWa~~yPd~V~~~i~ia~ 180 (368)
T COG2021 126 VITIRDMVRAQRLLLDALGIKKLAAVVGGSMGG--MQALEWAIRYPDRVRRAIPIAT 180 (368)
T ss_pred cccHHHHHHHHHHHHHhcCcceEeeeeccChHH--HHHHHHHHhChHHHhhhheecc
Confidence 35667888888999999997 89999887 4556666554322235555555
No 190
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=23.61 E-value=1.9e+02 Score=21.20 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=23.1
Q ss_pred ceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccccChhhcHHH
Q 037531 45 LLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSSEMFDAE 92 (106)
Q Consensus 45 i~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY~s~~~~~~~ 92 (106)
+++|+++-+.+.+.++.+......+..|.++.+ .|+.+..+|.++
T Consensus 155 lIAgGtGItP~~s~l~~~~~~~~~~~~v~l~~g---~r~~~d~~~~~e 199 (283)
T cd06188 155 FIGGGAGMAPLRSHIFHLLKTLKSKRKISFWYG---ARSLKELFYQEE 199 (283)
T ss_pred EEEecccHhHHHHHHHHHHhcCCCCceEEEEEe---cCCHHHhhHHHH
Confidence 456677667777776654332112345655553 333444455443
No 191
>PF06245 DUF1015: Protein of unknown function (DUF1015); InterPro: IPR008323 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.45 E-value=3.3e+02 Score=21.64 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=40.9
Q ss_pred CccCeEEEeCHHHHHHHHHHHH-HHhCceeeechHHHHHHHHHHHHHhCCC----------CCEEEEE--eCCCCccccC
Q 037531 19 SILDEVVRVTSNEAIQTAKLLG-AKEGLLVGISSGAAAAAAIKIAKRAENA----------GKLIVVI--FPSSGERYLS 85 (106)
Q Consensus 19 ~~vD~~i~V~d~ea~~~~r~l~-~~eGi~~G~Ssga~l~aa~~~a~~~~~~----------~~~Vv~i--~~D~g~kY~s 85 (106)
........|+|.+.++....+. +...+++. =|=+-+++|+.+.++.... +-..+.+ ++|.|.+=+.
T Consensus 177 G~~H~lW~v~d~~~i~~i~~~~~~~~~lyIA-DGHHR~atA~~~~~~~~~~~~~~~~~~p~~y~l~~l~~~~d~gL~I~p 255 (416)
T PF06245_consen 177 GVRHRLWRVTDPAVIAKIQEAFEADKPLYIA-DGHHRYATALAYREERKEQNPEHTGDEPYNYFLMYLVNFPDPGLRILP 255 (416)
T ss_pred CCEEEEEEeCCHHHHHHHHHHHhhcCceEEe-cCcHHHHHHHHHHHHHHhhCCCCCCCcCccEEEEEEeccCCCCCEEEe
Confidence 3455667799999999999888 76677765 2234455555555443211 1234445 7888877543
No 192
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=23.43 E-value=1.2e+02 Score=20.23 Aligned_cols=30 Identities=7% Similarity=0.117 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHH-hC-------CCCCEEEEEeCCCCc
Q 037531 52 GAAAAAAIKIAKR-AE-------NAGKLIVVIFPSSGE 81 (106)
Q Consensus 52 ga~l~aa~~~a~~-~~-------~~~~~Vv~i~~D~g~ 81 (106)
++++..|++.+.+ +. +...+++++++|+-.
T Consensus 78 ~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~ 115 (164)
T cd01482 78 NTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKS 115 (164)
T ss_pred CChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCC
Confidence 3466677765432 21 123578999999853
No 193
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=23.36 E-value=2e+02 Score=22.17 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHhCc--eeeechHHHHHHHHHHHHH
Q 037531 28 TSNEAIQTAKLLGAKEGL--LVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eGi--~~G~Ssga~l~aa~~~a~~ 64 (106)
+.+.+...+++|..++|+ ++|+.+.....++...+++
T Consensus 52 ~p~~a~~~a~~li~~d~v~~viG~~~S~~~~A~~~~~~~ 90 (374)
T TIGR03669 52 DNERYQELTRRLLNRDKVDALWAGYSSATREAIRPIIDR 90 (374)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEcCCchHHHHHHHHHHHh
Confidence 466799999999988775 4566444444455555554
No 194
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.20 E-value=1.5e+02 Score=22.11 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHHhCc--eeeechHHHHHHHHHHHHH
Q 037531 28 TSNEAIQTAKLLGAKEGL--LVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eGi--~~G~Ssga~l~aa~~~a~~ 64 (106)
+.+.+.+.+++|.+++++ ++|+.+.....+...++++
T Consensus 51 ~p~~a~~~a~~Li~~~~V~aiiG~~~s~~~~a~~~~~~~ 89 (347)
T cd06335 51 NPARGLQNAQELAADEKVVAVLGGLHTPVALANLEFIQQ 89 (347)
T ss_pred CcHHHHHHHHHHhccCCeEEEEcCCCCHHHHhhhHHHHh
Confidence 566899999999998886 5577544444455566654
No 195
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=23.03 E-value=1.3e+02 Score=22.26 Aligned_cols=40 Identities=28% Similarity=0.364 Sum_probs=27.9
Q ss_pred EEeCHHHHHHHHHHHHHHh---C------ceeeechHHHHHHHHHHHHH
Q 037531 25 VRVTSNEAIQTAKLLGAKE---G------LLVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 25 i~V~d~ea~~~~r~l~~~e---G------i~~G~Ssga~l~aa~~~a~~ 64 (106)
+...-+|+.++.+.+.++- | .++|-|+|.+|++++-+..+
T Consensus 126 ~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~ 174 (312)
T COG0657 126 FPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAAR 174 (312)
T ss_pred CCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHH
Confidence 4445566777777777552 2 47899999999888766544
No 196
>PRK12829 short chain dehydrogenase; Provisional
Probab=23.03 E-value=67 Score=22.60 Aligned_cols=39 Identities=28% Similarity=0.204 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEe
Q 037531 34 QTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIF 76 (106)
Q Consensus 34 ~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~ 76 (106)
+++..+-.+.-++.|++++.....+.+++++ +.+|+++.
T Consensus 4 ~~~~~~~~~~vlItGa~g~iG~~~a~~L~~~----g~~V~~~~ 42 (264)
T PRK12829 4 DLLKPLDGLRVLVTGGASGIGRAIAEAFAEA----GARVHVCD 42 (264)
T ss_pred hHhhccCCCEEEEeCCCCcHHHHHHHHHHHC----CCEEEEEe
Confidence 3444454456678899999998888888764 34554444
No 197
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=22.79 E-value=1.2e+02 Score=23.66 Aligned_cols=35 Identities=31% Similarity=0.377 Sum_probs=22.9
Q ss_pred ceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCcc
Q 037531 45 LLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGER 82 (106)
Q Consensus 45 i~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~k 82 (106)
++.|+|||... +++++|+... -.+|++.+++...+
T Consensus 162 Lv~ggsggVG~-~aiQlAk~~~--~~~v~t~~s~e~~~ 196 (347)
T KOG1198|consen 162 LVLGGSGGVGT-AAIQLAKHAG--AIKVVTACSKEKLE 196 (347)
T ss_pred EEEeCCcHHHH-HHHHHHHhcC--CcEEEEEcccchHH
Confidence 56666666655 7778887642 26788888775443
No 198
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=22.63 E-value=3e+02 Score=19.86 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHhCc--eeee-chHHHHHHHHHHHH
Q 037531 28 TSNEAIQTAKLLGAKEGL--LVGI-SSGAAAAAAIKIAK 63 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eGi--~~G~-Ssga~l~aa~~~a~ 63 (106)
+.+.+.+.+++|..++++ ++|+ +|..+. ++...++
T Consensus 49 ~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~-~~~~~~~ 86 (333)
T cd06332 49 KPDVAVQAARKLIEQDKVDVVVGPVFSNVAL-AVVPSLT 86 (333)
T ss_pred CHHHHHHHHHHHHHHcCCcEEEcCCccHHHH-HHHHHHh
Confidence 466788889999876554 6675 344433 4444444
No 199
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=22.52 E-value=2.8e+02 Score=19.38 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=37.5
Q ss_pred EEEeCHHHHHHHHHHHHHHhC---ceeeechHHHHHHHHHHHHHhCCCCCEEEEE
Q 037531 24 VVRVTSNEAIQTAKLLGAKEG---LLVGISSGAAAAAAIKIAKRAENAGKLIVVI 75 (106)
Q Consensus 24 ~i~V~d~ea~~~~r~l~~~eG---i~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i 75 (106)
.-+|+.-|-+......+.++| +++|++-+.+-.++.++.++. ++-+|+..
T Consensus 28 ~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~y--P~l~i~g~ 80 (177)
T TIGR00696 28 QSRVAGPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEY--PKLKIVGA 80 (177)
T ss_pred CCccChHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHC--CCCEEEEE
Confidence 346777788877777777777 788999888888888887775 56676654
No 200
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=22.46 E-value=2.9e+02 Score=21.11 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=33.2
Q ss_pred HHHHHHHHHHh-CceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 33 IQTAKLLGAKE-GLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 33 ~~~~r~l~~~e-Gi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
+...+...+.. ++.++-|+|.==....+++.+- -|+++|.+..|++.
T Consensus 7 l~~l~~~ik~~~kv~vAfSGGvDSslLa~la~~~--lG~~v~AvTv~sP~ 54 (269)
T COG1606 7 LERLKKAIKEKKKVVVAFSGGVDSSLLAKLAKEA--LGDNVVAVTVDSPY 54 (269)
T ss_pred HHHHHHHHhhcCeEEEEecCCccHHHHHHHHHHH--hccceEEEEEecCC
Confidence 45556666665 8999999997665666666543 35789999888843
No 201
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=22.38 E-value=88 Score=22.82 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCEEEEEeCCCCccc
Q 037531 51 SGAAAAAAIKIAKRAENAGKLIVVIFPSSGERY 83 (106)
Q Consensus 51 sga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~kY 83 (106)
+|.|+.+..+..+... -+..|+.++||..+-|
T Consensus 10 ~GSNlqaiida~~~~~-~~a~i~~Visd~~~A~ 41 (200)
T COG0299 10 NGSNLQAIIDAIKGGK-LDAEIVAVISDKADAY 41 (200)
T ss_pred CcccHHHHHHHHhcCC-CCcEEEEEEeCCCCCH
Confidence 4789988888877543 2578999999997765
No 202
>PLN03173 chalcone synthase; Provisional
Probab=22.21 E-value=1.8e+02 Score=22.98 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=38.9
Q ss_pred cccCccCeEEEeC--HHHHHHHHHHHHHHhCc-------eeeechHHHHHHHHHHHHHhC--CCCCEEEEEeCCCCc
Q 037531 16 LDVSILDEVVRVT--SNEAIQTAKLLGAKEGL-------LVGISSGAAAAAAIKIAKRAE--NAGKLIVVIFPSSGE 81 (106)
Q Consensus 16 ~~~~~vD~~i~V~--d~ea~~~~r~l~~~eGi-------~~G~Ssga~l~aa~~~a~~~~--~~~~~Vv~i~~D~g~ 81 (106)
++.+.||.++.+| ..+.=.....++++.|+ +....+.++...+++++..+- .+.++|++|.++.-.
T Consensus 119 ~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S 195 (391)
T PLN03173 119 QPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRSSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITA 195 (391)
T ss_pred CCHHHCCEEEEEccCCCcccHHHHHHHHHhCCCccceeeehhcCccHHHHHHHHHHHHHHHhCCCCeEEEEEEehhh
Confidence 3456677776664 22233444456666564 344555566666777776552 246788888877644
No 203
>PRK08862 short chain dehydrogenase; Provisional
Probab=22.10 E-value=1.3e+02 Score=21.32 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=14.2
Q ss_pred hCceeeechHHHHHHHHHHHHH
Q 037531 43 EGLLVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 43 eGi~~G~Ssga~l~aa~~~a~~ 64 (106)
.-++.|.|+|...+.+.+++++
T Consensus 7 ~~lVtGas~GIG~aia~~la~~ 28 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARL 28 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHC
Confidence 3456677777777766666653
No 204
>PRK13685 hypothetical protein; Provisional
Probab=22.08 E-value=3.4e+02 Score=20.51 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=23.1
Q ss_pred eeechHHHHHHHHHHHHHh-------CCCCCEEEEEeCCCCccc
Q 037531 47 VGISSGAAAAAAIKIAKRA-------ENAGKLIVVIFPSSGERY 83 (106)
Q Consensus 47 ~G~Ssga~l~aa~~~a~~~-------~~~~~~Vv~i~~D~g~kY 83 (106)
.++.-|.++..|.+..++. .....+.+++++|+.+..
T Consensus 164 ~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~ 207 (326)
T PRK13685 164 DRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETV 207 (326)
T ss_pred CCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCC
Confidence 4555667777777666531 112246778999988764
No 205
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=22.05 E-value=61 Score=23.48 Aligned_cols=40 Identities=15% Similarity=0.346 Sum_probs=31.5
Q ss_pred hCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCcc
Q 037531 43 EGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGER 82 (106)
Q Consensus 43 eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~k 82 (106)
..+++|.|++....-++|+.+.+...+..+=++++.++.+
T Consensus 3 ~riivgisGASG~iygvrlLe~L~~~~~e~hlviS~~a~~ 42 (191)
T COG0163 3 KRIIVGISGASGAIYGVRLLEVLRELGVETHLVISKAAKK 42 (191)
T ss_pred cEEEEEEeccccHHHHHHHHHHHHhcCceEEEEEcHHHHH
Confidence 3588999999988889999988754556777788887766
No 206
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=21.99 E-value=1.7e+02 Score=21.02 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=23.2
Q ss_pred eechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 48 GISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 48 G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
-+.+|.|+.+.++..++.. -...|++++||+.+
T Consensus 6 ~Sg~Gsn~~al~~~~~~~~-l~~~i~~visn~~~ 38 (207)
T PLN02331 6 VSGGGSNFRAIHDACLDGR-VNGDVVVVVTNKPG 38 (207)
T ss_pred EeCCChhHHHHHHHHHcCC-CCeEEEEEEEeCCC
Confidence 3445889988888776643 24688899998643
No 207
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=21.93 E-value=1.5e+02 Score=22.06 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeCCC
Q 037531 53 AAAAAAIKIAKRAENAGKLIVVIFPSS 79 (106)
Q Consensus 53 a~l~aa~~~a~~~~~~~~~Vv~i~~D~ 79 (106)
+++..+-++.++..-++++|++++.|.
T Consensus 19 ad~~~~Y~~l~~~G~~~~~Iil~~~dd 45 (256)
T PF01650_consen 19 ADVCHAYQLLKRNGIPDENIILMMYDD 45 (256)
T ss_pred hHHHHHHHHHHHcCCCCceEEEEecCC
Confidence 555666666666655788999999886
No 208
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=21.78 E-value=2.2e+02 Score=19.97 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=11.0
Q ss_pred ceeeechHHHHHHHHHHHHH
Q 037531 45 LLVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 45 i~~G~Ssga~l~aa~~~a~~ 64 (106)
+++|+++-+.+.+.++.+.+
T Consensus 113 liagGtGiaP~~~~l~~~~~ 132 (236)
T cd06210 113 FVAGGTGLAPLLSMLRRMAE 132 (236)
T ss_pred EEccCcchhHHHHHHHHHHh
Confidence 34556666666666555433
No 209
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=21.63 E-value=2.1e+02 Score=18.36 Aligned_cols=31 Identities=16% Similarity=0.058 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhCceeeechHHHHHHHHHHH
Q 037531 30 NEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIA 62 (106)
Q Consensus 30 ~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a 62 (106)
...++.+.+-+|+.|+.+.|++. ++.+.+..
T Consensus 58 ~~L~~~al~~ar~~g~kiiP~Cs--f~~a~~~~ 88 (99)
T COG2388 58 QKLVEKALEEAREAGLKIIPLCS--FAVATYFE 88 (99)
T ss_pred HHHHHHHHHHHHHcCCeEcccch--HHHHHHHH
Confidence 35667778888999999999987 44443433
No 210
>PRK08303 short chain dehydrogenase; Provisional
Probab=21.44 E-value=1.2e+02 Score=22.56 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=20.4
Q ss_pred HhCceeeechHHHHHHHHHHHHHhCCCCCEEEEE
Q 037531 42 KEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVI 75 (106)
Q Consensus 42 ~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i 75 (106)
+.-++.|+|+|...+.+.++++. +.+|+++
T Consensus 9 k~~lITGgs~GIG~aia~~la~~----G~~Vv~~ 38 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAA----GATVYVT 38 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC----CCEEEEE
Confidence 34467888888888888888763 3455544
No 211
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=21.41 E-value=92 Score=22.12 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=15.2
Q ss_pred HHHHHHhCceeeechHHHHHHH
Q 037531 37 KLLGAKEGLLVGISSGAAAAAA 58 (106)
Q Consensus 37 r~l~~~eGi~~G~Ssga~l~aa 58 (106)
++.+++.+.++|.|.|+.++.-
T Consensus 108 ~~~~~~g~~i~G~SAGa~i~~~ 129 (212)
T cd03146 108 KAALERGVVYIGWSAGSNCWFP 129 (212)
T ss_pred HHHHHCCCEEEEECHhHHhhCC
Confidence 3344455688999998877654
No 212
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=21.37 E-value=1.5e+02 Score=22.97 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHhCCCCCEEEEEeCC
Q 037531 50 SSGAAAAAAIKIAKRAENAGKLIVVIFPS 78 (106)
Q Consensus 50 Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D 78 (106)
+++|+++++++...+++ ...+|+.++|=
T Consensus 110 ~GAAaV~ga~~aia~lk-~~vnV~~~l~~ 137 (311)
T PF00883_consen 110 GGAAAVLGAMRAIAKLK-LPVNVVAVLPL 137 (311)
T ss_dssp HHHHHHHHHHHHHHHCT--SSEEEEEEEE
T ss_pred chHHHHHHHHHHHHHcC-CCceEEEEEEc
Confidence 56778888888887775 34777776653
No 213
>PRK05854 short chain dehydrogenase; Provisional
Probab=21.27 E-value=1.3e+02 Score=22.38 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=13.1
Q ss_pred hCceeeechHHHHHHHHHHHH
Q 037531 43 EGLLVGISSGAAAAAAIKIAK 63 (106)
Q Consensus 43 eGi~~G~Ssga~l~aa~~~a~ 63 (106)
.-++.|.|+|...+.+.++++
T Consensus 16 ~~lITGas~GIG~~~a~~La~ 36 (313)
T PRK05854 16 RAVVTGASDGLGLGLARRLAA 36 (313)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 345666666666666666654
No 214
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=21.26 E-value=2.5e+02 Score=20.84 Aligned_cols=37 Identities=24% Similarity=0.190 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHHhCc--eeeechHHHHHHHHHHHHH
Q 037531 28 TSNEAIQTAKLLGAKEGL--LVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eGi--~~G~Ssga~l~aa~~~a~~ 64 (106)
+.+.+....++|..++++ ++|+.+.+...++..++++
T Consensus 51 ~p~~a~~~~~~Li~~~~V~aiiG~~~s~~~~a~~~~~~~ 89 (334)
T cd06356 51 DNERYQQYAQRLALQDKVDVVWGGISSASREAIRPIMDR 89 (334)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeCcchHHHHHHHHHHHh
Confidence 467889999999987764 6677666555566666654
No 215
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=21.22 E-value=2.3e+02 Score=19.32 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=24.9
Q ss_pred HHhCceeeechHHHHHHHHHHHHHhCC--CCCEEEEEeCCC
Q 037531 41 AKEGLLVGISSGAAAAAAIKIAKRAEN--AGKLIVVIFPSS 79 (106)
Q Consensus 41 ~~eGi~~G~Ssga~l~aa~~~a~~~~~--~~~~Vv~i~~D~ 79 (106)
++....+|.|||.......+...+... +.++|.+...|-
T Consensus 18 ~~~~~~i~lsgGsTp~~~y~~L~~~~~~~~w~~v~~f~~DE 58 (169)
T cd00458 18 EKDDMVIGLGTGSTPAYFYKLLGEKLKRGEISDIVGFPTDE 58 (169)
T ss_pred hCCCEEEEECCCccHHHHHHHHHhhhhhCCccceEEEECcc
Confidence 344578888888776666655432211 356788888874
No 216
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=21.18 E-value=95 Score=20.80 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.8
Q ss_pred EEEeCHHHHHHHHHHHHHHhCcee
Q 037531 24 VVRVTSNEAIQTAKLLGAKEGLLV 47 (106)
Q Consensus 24 ~i~V~d~ea~~~~r~l~~~eGi~~ 47 (106)
+-.+|.++++..++++....|++.
T Consensus 93 IRqIPpee~L~l~~r~~d~~gil~ 116 (120)
T COG1334 93 IRQIPPEEALELAARMRDVIGILF 116 (120)
T ss_pred hhhCChHHHHHHHHHHHHhhhhee
Confidence 345899999999999999999875
No 217
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=21.11 E-value=1e+02 Score=22.63 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=18.1
Q ss_pred EEEeCHHHHHHHHH------------HHHHHhCceeeechHHHH
Q 037531 24 VVRVTSNEAIQTAK------------LLGAKEGLLVGISSGAAA 55 (106)
Q Consensus 24 ~i~V~d~ea~~~~r------------~l~~~eGi~~G~Ssga~l 55 (106)
.+.|+--+....++ +..++-..++|.|+||.+
T Consensus 82 ~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii 125 (233)
T PRK05282 82 AIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANV 125 (233)
T ss_pred EEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHh
Confidence 56666555544443 333333457777777766
No 218
>PRK00074 guaA GMP synthase; Reviewed
Probab=20.96 E-value=1.4e+02 Score=24.52 Aligned_cols=50 Identities=22% Similarity=0.402 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCCCc
Q 037531 30 NEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81 (106)
Q Consensus 30 ~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~ 81 (106)
++.++..++..+...++++.|+|.==..+..++.+.. +.+++++..|+|.
T Consensus 203 ~~~~~~l~~~v~~~~vlva~SGGvDS~vll~ll~~~l--g~~v~av~vd~g~ 252 (511)
T PRK00074 203 EEAIEEIREQVGDKKVILGLSGGVDSSVAAVLLHKAI--GDQLTCVFVDHGL 252 (511)
T ss_pred HHHHHHHHHhcCCCcEEEEeCCCccHHHHHHHHHHHh--CCceEEEEEeCCC
Confidence 3455666666667789999999975555555554431 4578889999986
No 219
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=20.94 E-value=1.7e+02 Score=19.56 Aligned_cols=15 Identities=7% Similarity=0.257 Sum_probs=11.6
Q ss_pred CCCEEEEEeCCCCcc
Q 037531 68 AGKLIVVIFPSSGER 82 (106)
Q Consensus 68 ~~~~Vv~i~~D~g~k 82 (106)
...+++++++|+-..
T Consensus 102 ~~~~~iiliTDG~~~ 116 (174)
T cd01454 102 EKRKILLVISDGEPN 116 (174)
T ss_pred CcCcEEEEEeCCCcC
Confidence 457899999997554
No 220
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=20.86 E-value=1.3e+02 Score=20.84 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=20.3
Q ss_pred eechHHHHHHHHHHHHHh-C--C--CCCEEEEEeCCCCc
Q 037531 48 GISSGAAAAAAIKIAKRA-E--N--AGKLIVVIFPSSGE 81 (106)
Q Consensus 48 G~Ssga~l~aa~~~a~~~-~--~--~~~~Vv~i~~D~g~ 81 (106)
.+.++.++..+++.+.+. . + ..++++++++|..+
T Consensus 81 ~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~ 119 (183)
T cd01453 81 ECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLST 119 (183)
T ss_pred CCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCc
Confidence 445567777777776433 1 1 13568888887543
No 221
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=20.86 E-value=2.4e+02 Score=19.55 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=34.1
Q ss_pred cCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhC
Q 037531 18 VSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE 66 (106)
Q Consensus 18 ~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~ 66 (106)
-.+++.--.+++ ++.++.++| ++.|+.+-.+||-....+.++++.+.
T Consensus 10 GTLl~~~~~i~~-~~~~~i~~l-~~~g~~~~~~TGR~~~~~~~~~~~l~ 56 (215)
T TIGR01487 10 GTLTEPNRMISE-RAIEAIRKA-EKKGIPVSLVTGNTVPFARALAVLIG 56 (215)
T ss_pred CCcCCCCcccCH-HHHHHHHHH-HHCCCEEEEEcCCcchhHHHHHHHhC
Confidence 344443334554 557777788 55799999999999999988887764
No 222
>PRK08275 putative oxidoreductase; Provisional
Probab=20.78 E-value=1.5e+02 Score=24.26 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=20.2
Q ss_pred CceeeechHHHHHHHHHHHHHhCCCCCEEEEE
Q 037531 44 GLLVGISSGAAAAAAIKIAKRAENAGKLIVVI 75 (106)
Q Consensus 44 Gi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i 75 (106)
=+++=++++|.+.||+..++.. ++.+|++|
T Consensus 11 DVlVIG~G~AGl~AAi~aa~~g--~g~~Vilv 40 (554)
T PRK08275 11 DILVIGGGTAGPMAAIKAKERN--PALRVLLL 40 (554)
T ss_pred CEEEECcCHHHHHHHHHHHHhC--CCCeEEEE
Confidence 3667778888899999887642 23444443
No 223
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=20.66 E-value=1.3e+02 Score=21.27 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=15.9
Q ss_pred hCceeeechHHHHHHHHHHHHH
Q 037531 43 EGLLVGISSGAAAAAAIKIAKR 64 (106)
Q Consensus 43 eGi~~G~Ssga~l~aa~~~a~~ 64 (106)
.-++.|.|+|...+.+.+++++
T Consensus 10 ~~lItGas~gIG~aia~~l~~~ 31 (251)
T PRK12481 10 VAIITGCNTGLGQGMAIGLAKA 31 (251)
T ss_pred EEEEeCCCchHHHHHHHHHHHC
Confidence 3467788888888777777753
No 224
>PLN03170 chalcone synthase; Provisional
Probab=20.59 E-value=2.1e+02 Score=22.64 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=41.5
Q ss_pred cccCccCeEEEeCH--HHHHHHHHHHHHHhCc-------eeeechHHHHHHHHHHHHHhC--CCCCEEEEEeCCCCcccc
Q 037531 16 LDVSILDEVVRVTS--NEAIQTAKLLGAKEGL-------LVGISSGAAAAAAIKIAKRAE--NAGKLIVVIFPSSGERYL 84 (106)
Q Consensus 16 ~~~~~vD~~i~V~d--~ea~~~~r~l~~~eGi-------~~G~Ssga~l~aa~~~a~~~~--~~~~~Vv~i~~D~g~kY~ 84 (106)
++.+.||.++.+|. .+.=.....++++.|+ +.-..+.++...+++++..+- .+.++|+++.++.-..++
T Consensus 123 ~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~~~~r~~d~~~gC~G~~~aL~~A~~l~~~~~~~~vLVV~~E~~S~~~ 202 (401)
T PLN03170 123 QPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTF 202 (401)
T ss_pred CCHHHCCEEEEEccCCCCCChHHHHHHHHhCcCcccHHHHhhcChhHHHHHHHHHHHHHHHcCCCCeEEEEEEehhhhcc
Confidence 34567788776653 2344555666666665 334455555666677775542 246788888777655433
No 225
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=20.59 E-value=2.1e+02 Score=20.51 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=34.7
Q ss_pred ccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhC
Q 037531 17 DVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE 66 (106)
Q Consensus 17 ~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~ 66 (106)
|-.+++.--.+++. ..++.+++ ++.|+.+..+||-.+..+..+.+++.
T Consensus 11 DGTLl~~~~~i~~~-~~~ai~~l-~~~G~~~~iaTGR~~~~~~~~~~~l~ 58 (270)
T PRK10513 11 DGTLLLPDHTISPA-VKQAIAAA-RAKGVNVVLTTGRPYAGVHRYLKELH 58 (270)
T ss_pred CCcCcCCCCccCHH-HHHHHHHH-HHCCCEEEEecCCChHHHHHHHHHhC
Confidence 44455444456544 46666666 66799999999999999998888763
No 226
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=20.59 E-value=2.4e+02 Score=17.81 Aligned_cols=30 Identities=20% Similarity=0.054 Sum_probs=13.9
Q ss_pred HHHHHHHHHH--HHhCceeeechHHHHHHHHH
Q 037531 31 EAIQTAKLLG--AKEGLLVGISSGAAAAAAIK 60 (106)
Q Consensus 31 ea~~~~r~l~--~~eGi~~G~Ssga~l~aa~~ 60 (106)
++.+.+.++. ..+...+.+++..++..+.+
T Consensus 4 ~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~ 35 (170)
T cd01494 4 ELEEKLARLLQPGNDKAVFVPSGTGANEAALL 35 (170)
T ss_pred HHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHH
Confidence 4455555665 44444444443333333333
No 227
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=20.56 E-value=3e+02 Score=21.99 Aligned_cols=47 Identities=26% Similarity=0.176 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhC--CCCCEEEEEeCC
Q 037531 30 NEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE--NAGKLIVVIFPS 78 (106)
Q Consensus 30 ~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~--~~~~~Vv~i~~D 78 (106)
..|+...+++-.+.+|--|+-|-+ .+|.+++++.- ..+++|+++-++
T Consensus 142 ~~A~~~aKrVrteT~I~~~~vSv~--~~Av~la~~~~~~l~~kkvlviGaG 190 (414)
T PRK13940 142 QKVFATAKRVRSETRIGHCPVSVA--FSAITLAKRQLDNISSKNVLIIGAG 190 (414)
T ss_pred HHHHHHHHHHHhccCCCCCCcCHH--HHHHHHHHHHhcCccCCEEEEEcCc
Confidence 356666667766677766666655 34445555431 245667766665
No 228
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=20.55 E-value=1e+02 Score=19.37 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=18.0
Q ss_pred CeEEEeCHH----HHHHHHHHHHHHhCceee
Q 037531 22 DEVVRVTSN----EAIQTAKLLGAKEGLLVG 48 (106)
Q Consensus 22 D~~i~V~d~----ea~~~~r~l~~~eGi~~G 48 (106)
.+.++++++ +|++.++..++++|--.|
T Consensus 49 GD~iti~sq~DLd~Ai~~a~~~~~~~~~~~~ 79 (86)
T cd06408 49 GDMITMGDQDDLDMAIDTARSEARKQGSDMG 79 (86)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHhhccccc
Confidence 456666554 577777777778886544
No 229
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=20.55 E-value=98 Score=23.17 Aligned_cols=49 Identities=16% Similarity=0.063 Sum_probs=32.3
Q ss_pred ceeeechHHHHHHHHHHHHHhC----------------CCCCEEEEEeCCCCccccChhhcHHHHH
Q 037531 45 LLVGISSGAAAAAAIKIAKRAE----------------NAGKLIVVIFPSSGERYLSSEMFDAERQ 94 (106)
Q Consensus 45 i~~G~Ssga~l~aa~~~a~~~~----------------~~~~~Vv~i~~D~g~kY~s~~~~~~~~~ 94 (106)
+..|++||-.++-|.+..+... .....+.+..||-+++..-. -+-+|.+
T Consensus 9 LITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~-~lvewLk 73 (245)
T COG3967 9 LITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRR-ELVEWLK 73 (245)
T ss_pred EEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHH-HHHHHHH
Confidence 5678999999888877766431 12346788889988885444 2334443
No 230
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=20.48 E-value=3e+02 Score=21.44 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Q 037531 29 SNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSS 79 (106)
Q Consensus 29 d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~ 79 (106)
|.++++++...++.+.-++.+.+.-++-....++++. +..|+...+|.
T Consensus 138 D~evleaale~~~g~~pLInSat~en~~~i~~lA~~y---~~~Vva~s~~D 185 (319)
T PRK04452 138 DAEVLEKVAEAAEGERCLLGSAEEDNYKKIAAAAMAY---GHAVIAWSPLD 185 (319)
T ss_pred CHHHHHHHHHHhCCCCCEEEECCHHHHHHHHHHHHHh---CCeEEEEcHHH
Confidence 8899999999988776788888888888888888764 45666666565
No 231
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=20.43 E-value=3.1e+02 Score=19.05 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHHhCceeee-----chHHHHHHHHHHHHHhCCCCCEEEEEeCCCCcc
Q 037531 28 TSNEAIQTAKLLGAKEGLLVGI-----SSGAAAAAAIKIAKRAENAGKLIVVIFPSSGER 82 (106)
Q Consensus 28 ~d~ea~~~~r~l~~~eGi~~G~-----Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D~g~k 82 (106)
+..|+..+...| ++.|+-+.- -+..++..+++...+...+++.+++.++++|.+
T Consensus 20 ~~~D~~~~~~~L-~~~gf~~~~~l~~~~t~~~i~~~l~~l~~~~~~~D~~~~yfsGHG~~ 78 (248)
T PF00656_consen 20 AVNDAEAMAEAL-EKLGFDVENILIDNATRANILKALRELLQRAQPGDSVVFYFSGHGIQ 78 (248)
T ss_dssp HHHHHHHHHHHH-HHTTEEEEEEEEESSSHHHHHHHHHHHHTSGGTCSEEEEEEESEEET
T ss_pred HHHHHHHHHHHH-HHcCCceeeccccchHHHHHHHHHhhhhccCCCCCeeEEEEeccccc
Confidence 456777767777 888865444 445556666555443323678999999999966
No 232
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=20.32 E-value=3.1e+02 Score=20.28 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=22.8
Q ss_pred HHHHHhCceeeechHHHHHHH-HHHHHHhCCCCCEEEEE
Q 037531 38 LLGAKEGLLVGISSGAAAAAA-IKIAKRAENAGKLIVVI 75 (106)
Q Consensus 38 ~l~~~eGi~~G~Ssga~l~aa-~~~a~~~~~~~~~Vv~i 75 (106)
.+. +.|..+|.-||.....+ ..++++....+-+|..+
T Consensus 17 ~~V-~~gmvvGLGTGSTv~~~i~~L~~~~~~~~l~i~~V 54 (228)
T PRK13978 17 SQI-NGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGV 54 (228)
T ss_pred HhC-CCCCEEEeCchHHHHHHHHHHHHHhhccCccEEEE
Confidence 444 46999998888887755 46666543223345444
No 233
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=20.31 E-value=1.4e+02 Score=22.95 Aligned_cols=29 Identities=28% Similarity=0.217 Sum_probs=18.3
Q ss_pred eeeechHHHHHHHHHHHHHhCCCCCEEEEEeCC
Q 037531 46 LVGISSGAAAAAAIKIAKRAENAGKLIVVIFPS 78 (106)
Q Consensus 46 ~~G~Ssga~l~aa~~~a~~~~~~~~~Vv~i~~D 78 (106)
+|=+++.|.+.||++.++. +.+|++|=-.
T Consensus 3 vVIG~G~AGl~AA~~Aae~----G~~V~lvek~ 31 (417)
T PF00890_consen 3 VVIGGGLAGLAAAIEAAEA----GAKVLLVEKG 31 (417)
T ss_dssp EEE-SSHHHHHHHHHHHHT----TT-EEEEESS
T ss_pred EEECCCHHHHHHHHHHhhh----cCeEEEEEee
Confidence 4556778889999998875 3455555433
No 234
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=20.21 E-value=1.7e+02 Score=20.89 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=34.5
Q ss_pred ccCccCeEEEeCHHHHHHHHHHHHHHhCceeeechHHHHHHHHHHHHHhC
Q 037531 17 DVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE 66 (106)
Q Consensus 17 ~~~~vD~~i~V~d~ea~~~~r~l~~~eGi~~G~Ssga~l~aa~~~a~~~~ 66 (106)
|-.+++.--.++++ ..++.++|. +.|+.+...||-....+.++.++..
T Consensus 7 DGTLl~~~~~i~~~-~~~~i~~l~-~~G~~~~iaTGR~~~~~~~~~~~~~ 54 (256)
T TIGR00099 7 DGTLLNDDHTISPS-TKEALAKLR-EKGIKVVLATGRPYKEVKNILKELG 54 (256)
T ss_pred CCCCCCCCCccCHH-HHHHHHHHH-HCCCeEEEEeCCCHHHHHHHHHHcC
Confidence 33455544456654 577777774 5699999999999988888887763
Done!