RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 037531
(106 letters)
>gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase.
Length = 322
Score = 153 bits (389), Expect = 2e-47
Identities = 77/100 (77%), Positives = 89/100 (89%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
HKIQGIG GF+P VLDV +LDEVV+V+S+EAI+TAKLL KEGLLVGISSGAAAAAAIKI
Sbjct: 221 HKIQGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKI 280
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAENMAY 101
AKR ENAGKLIVVIFPS GERYLSS +F++ ++ AENM +
Sbjct: 281 AKRPENAGKLIVVIFPSFGERYLSSVLFESVKKEAENMVF 320
>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase.
Length = 323
Score = 142 bits (358), Expect = 6e-43
Identities = 68/98 (69%), Positives = 84/98 (85%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
H IQGIG G +P LD++I+DE+++VT EAI+TAKLL KEGLLVGISSGAAAAAA+K+
Sbjct: 223 HLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKV 282
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAENM 99
AKR ENAGKLIVVIFPS GERYLS+++F++ R AEN+
Sbjct: 283 AKRPENAGKLIVVIFPSGGERYLSTKLFESVRYEAENL 320
>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase. This model discriminates
cysteine synthases (EC 2.5.1.47) (both CysK and CysM)
from cystathionine beta-synthase, a protein found
primarily in eukaryotes and carrying a C-terminal CBS
domain lacking from this protein. Bacterial proteins
lacking the CBS domain but otherwise showing
resemblamnce to cystathionine beta-synthases and
considerable phylogenetic distance from known cysteine
synthases were excluded from the seed and score below
the trusted cutoff [Amino acid biosynthesis, Serine
family].
Length = 299
Score = 133 bits (336), Expect = 1e-39
Identities = 55/88 (62%), Positives = 73/88 (82%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
HKIQGIG GF+P +LD+S++DEV+ V+ +AI+TA+ L +EG+LVGISSGAA AAA+K+
Sbjct: 212 HKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKL 271
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMF 89
AKR ENA K+IV I P +GERYLS+ +F
Sbjct: 272 AKRLENADKVIVAILPDTGERYLSTGLF 299
>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A. This model distinguishes
cysteine synthase A (CysK) from cysteine synthase B
(CysM). CysM differs in having a broader specificity
that also allows the use of thiosulfate to produce
cysteine thiosulfonate [Amino acid biosynthesis, Serine
family].
Length = 298
Score = 130 bits (328), Expect = 2e-38
Identities = 57/88 (64%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
HKIQGIG GF+P L+ S++DEV+ V+ EAI+TA+ L A+EG+LVGISSGAA AAA+K+
Sbjct: 212 HKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKL 271
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMF 89
AKR E KLIVVI PS+GERYLS+ +F
Sbjct: 272 AKRPE-PDKLIVVILPSTGERYLSTPLF 298
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a
unique heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine. Deficiency of CBS
leads to homocystinuria, an inherited disease of sulfur
metabolism characterized by increased levels of the
toxic metabolite homocysteine. Cysteine synthase on the
other hand catalyzes the last step of cysteine
biosynthesis. This subgroup also includes an
O-Phosphoserine sulfhydrylase found in hyperthermophilic
archaea which produces L-cysteine from sulfide and the
more thermostable O-phospho-L-serine.
Length = 291
Score = 119 bits (302), Expect = 1e-34
Identities = 53/84 (63%), Positives = 62/84 (73%), Gaps = 1/84 (1%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
HKI+GIG GF+P LD S++DEVVRV+ EA A+ L +EGLLVG SSGAA AAA+K+
Sbjct: 209 HKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKL 268
Query: 62 AKRAENAGKLIVVIFPSSGERYLS 85
AKR GK IV I P SGERYLS
Sbjct: 269 AKRLG-PGKTIVTILPDSGERYLS 291
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and
metabolism].
Length = 300
Score = 118 bits (299), Expect = 3e-34
Identities = 55/85 (64%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Query: 1 HHKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIK 60
HKI+GIG GFVP LD+ ++DEV+RV+ EAI TA+ L +EGLLVGISSGAA AAA+K
Sbjct: 216 PHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALK 275
Query: 61 IAKRAENAGKLIVVIFPSSGERYLS 85
+AK AGK IV I P SGERYLS
Sbjct: 276 LAKELP-AGKTIVTILPDSGERYLS 299
>gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase.
Length = 368
Score = 120 bits (302), Expect = 3e-34
Identities = 54/102 (52%), Positives = 73/102 (71%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
H I G G+GF P +LD+ ++++V+ V+S +A+ A+ L KEGL+VGISSGA AA+++
Sbjct: 265 HHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRL 324
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAENMAYVS 103
AK EN GKLIV + PS GERYLSS +F R+ AENM VS
Sbjct: 325 AKMPENKGKLIVTVHPSFGERYLSSVLFQELRKEAENMQPVS 366
>gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase.
Length = 429
Score = 119 bits (300), Expect = 1e-33
Identities = 56/98 (57%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
HKIQGIG GF+P LD I+DEV+ ++S EAI+TAK L KEGL+VGISSGAAAAAAIK+
Sbjct: 329 HKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKV 388
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAENM 99
AKR ENAGKLI V +SG R + + +
Sbjct: 389 AKRPENAGKLIAVSLFASG-RDIYTPRCSSLSGKRWRK 425
>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional.
Length = 330
Score = 86.1 bits (214), Expect = 1e-21
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
+GIG G + + L+ + +D+ +R+ EA+ TA L +EGL +G SSG AAA+++
Sbjct: 231 SITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRL 290
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFDAE 92
A+ G IV I SGERY S +F+ +
Sbjct: 291 ARE-LGPGHTIVTILCDSGERYQSK-LFNPD 319
>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase. Members of
this family closely resemble cysteine synthase but
contain an additional C-terminal CBS domain. The
function of any bacterial member included in this family
is proposed but not proven [Amino acid biosynthesis,
Serine family].
Length = 454
Score = 81.0 bits (200), Expect = 2e-19
Identities = 35/90 (38%), Positives = 57/90 (63%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
+K++GIG F+P+VLD ++DE ++ E+ + A+ L +EGLLVG SSG+A AA+K
Sbjct: 224 YKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKA 283
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFDA 91
A+ ++IVV+ P S Y++ + D
Sbjct: 284 AEDELTEDQVIVVLLPDSIRNYMTKFLNDE 313
>gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional.
Length = 296
Score = 79.1 bits (196), Expect = 4e-19
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 11 FVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGK 70
++P + D S +D V+ V+ EA T + L +EG+ G+SSG A AAA++IA+ NA
Sbjct: 218 YLPKIFDASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARENPNA-- 275
Query: 71 LIVVIFPSSGERYLSSEMFDA 91
+IV I G+RYLS+ +F A
Sbjct: 276 VIVAIICDRGDRYLSTGVFPA 296
>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B. CysM differs from CysK in
that it can also use thiosulfate instead of sulfide, to
produce cysteine thiosulfonate instead of cysteine.
Alternate name: O-acetylserine (thiol)-lyase [Amino acid
biosynthesis, Serine family].
Length = 290
Score = 69.6 bits (170), Expect = 1e-15
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 11 FVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGK 70
++P + D S++D V+ + +A T + L +EG+ G+SSG A AAA+++A+ E
Sbjct: 214 YLPGIFDASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAR--ELPDA 271
Query: 71 LIVVIFPSSGERYLSSEMF 89
++V I G+RYLS+ +F
Sbjct: 272 VVVAIICDRGDRYLSTGVF 290
>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein
SbnA. Members of this family include SbnA, a protein of
the staphyloferrin B biosynthesis operon of
Staphylococcus aureus. SbnA and SbnB together appear to
synthesize 2,3-diaminopropionate, a precursor of certain
siderophores and other secondary metabolites. SbnA is a
pyridoxal phosphate-dependent enzyme [Cellular
processes, Biosynthesis of natural products].
Length = 304
Score = 64.5 bits (158), Expect = 8e-14
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 4 IQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAK 63
I G+G VP +LD S++D+VV V + + + L +EG+L G SSG AA ++
Sbjct: 216 IPGLGASVVPELLDESLIDDVVHVPEYDTVAGCRRLARREGILAGGSSGTVVAAIKRLLP 275
Query: 64 RAENAGKLIVVIFPSSGERYLSS 86
R G +V I P GERYL +
Sbjct: 276 RIP-PGSTVVAILPDRGERYLDT 297
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Members of
this family are all pyridoxal-phosphate dependent
enzymes. This family includes: serine dehydratase
EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16,
tryptophan synthase beta chain EC:4.2.1.20, threonine
synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8
P11096, cystathionine beta-synthase EC:4.2.1.22,
1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Length = 295
Score = 59.7 bits (145), Expect = 5e-12
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 1 HHKIQGIGIGF-VPSVLDVSILDE----VVRVTSNEAIQTAKLLGAKEGLLVGISSGAAA 55
I G+G G + L + ++DE V V+ EA++ +LL +EG+LV SS AA
Sbjct: 213 PTTIAGLGPGIPLDGELALELIDEYVGDVYAVSDEEALEAIRLLARREGILVEPSSAAAL 272
Query: 56 AAAIKIAKRAENAGKLIVVIFP 77
AAA+++A+ GK +VV+
Sbjct: 273 AAALRLAELELGKGKRVVVVLT 294
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily
(fold type II); this family of pyridoxal phosphate
(PLP)-dependent enzymes catalyzes beta-replacement and
beta-elimination reactions. This CD corresponds to
aminocyclopropane-1-carboxylate deaminase (ACCD),
tryptophan synthase beta chain (Trp-synth_B),
cystathionine beta-synthase (CBS), O-acetylserine
sulfhydrylase (CS), serine dehydratase (Ser-dehyd),
threonine dehydratase (Thr-dehyd), diaminopropionate
ammonia lyase (DAL), and threonine synthase (Thr-synth).
ACCD catalyzes the conversion of
1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate
and ammonia. Tryptophan synthase folds into a tetramer,
where the beta chain is the catalytic PLP-binding
subunit and catalyzes the formation of L-tryptophan from
indole and L-serine. CBS is a tetrameric hemeprotein
that catalyzes condensation of serine and homocysteine
to cystathionine. CS is a homodimer that catalyzes the
formation of L-cysteine from O-acetyl-L-serine.
Ser-dehyd catalyzes the conversion of L- or D-serine to
pyruvate and ammonia. Thr-dehyd is active as a homodimer
and catalyzes the conversion of L-threonine to
2-oxobutanoate and ammonia. DAL is also a homodimer and
catalyzes the alpha, beta-elimination reaction of both
L- and D-alpha, beta-diaminopropionate to form pyruvate
and ammonia. Thr-synth catalyzes the formation of
threonine and inorganic phosphate from
O-phosphohomoserine.
Length = 244
Score = 54.4 bits (132), Expect = 3e-10
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 23 EVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSS 79
EVV V+ EA++ +LL +EG+LV SS AA AAA+K+AK+ GK +VVI
Sbjct: 189 EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKL-GKGKTVVVILTGG 244
>gnl|CDD|215204 PLN02356, PLN02356, phosphateglycerate kinase.
Length = 423
Score = 42.3 bits (99), Expect = 1e-05
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 5 QGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKR 64
+GIGI + ++ LD R T EA++ ++ L +GL VG SS A+++A+
Sbjct: 319 EGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQ- 377
Query: 65 AENAGKLIVVIFPSSGERYLS 85
+ G IV I SG R+LS
Sbjct: 378 SLGPGHTIVTILCDSGMRHLS 398
>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase
is a bifunctional enzyme that catalyses the last two
steps in the biosynthesis of L-tryptophan via its alpha
and beta reactions. In the alpha reaction, indole
3-glycerol phosphate is cleaved reversibly to
glyceraldehyde 3-phosphate and indole at the active site
of the alpha subunit. In the beta reaction, indole
undergoes a PLP-dependent reaction with L-serine to form
L-tryptophan at the active site of the beta subunit.
Members of this CD, Trp-synth_B, are found in all three
major phylogenetic divisions.
Length = 365
Score = 36.4 bits (85), Expect = 0.001
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 23 EVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVV 74
E V VT EA++ KLL EG++ + S A A AIK+AK+ K+IVV
Sbjct: 302 EYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKL-GKEKVIVV 352
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and
metabolism].
Length = 411
Score = 36.1 bits (84), Expect = 0.001
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 25 VRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVI 75
V V+ E ++ KLL +EG+L+ S A AA +K+ ++ + + +V++
Sbjct: 317 VAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLV 367
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and
metabolism].
Length = 347
Score = 35.7 bits (83), Expect = 0.002
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 21 LDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVI 75
+D++V V +E + L + ++ +GA A AA+ K GK +VVI
Sbjct: 256 VDDIVLVDEDEICAAMRDLFERTKIIAE-PAGALALAALLAGKIEPLQGKTVVVI 309
>gnl|CDD|233403 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like
enzyme. This model represents a family of
pyridoxal-phosphate dependent enzyme (pfam00291) closely
related to the beta subunit of tryptophan synthase
(TIGR00263). However, the only case in which a member of
this family replaces a member of TIGR00263 is in
Sulfolobus species which contain two sequences which hit
this model, one of which is proximal to the alpha
subunit. In every other case so far, either the species
appears not to make tryptophan (there is no trp synthase
alpha subunit), or a trp synthase beta subunit matching
TIGR00263 is also found [Unknown function, Enzymes of
unknown specificity].
Length = 419
Score = 34.4 bits (79), Expect = 0.005
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 31 EAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYL 84
EA + A + EG++ S A AAAI A++ G+ V++F SG L
Sbjct: 354 EAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVILFNLSGHGLL 407
>gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport
and metabolism].
Length = 396
Score = 32.6 bits (75), Expect = 0.022
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 23 EVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVV 74
E V +T EA++ +LL EG++ + S A A A+K+A + ++IVV
Sbjct: 323 EYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPK-LPKDEIIVV 373
>gnl|CDD|224269 COG1350, COG1350, Predicted alternative tryptophan synthase
beta-subunit (paralog of TrpB) [General function
prediction only].
Length = 432
Score = 32.4 bits (74), Expect = 0.025
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 31 EAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYL 84
E + A L EG++ S A AAI A +A G+ V++F SG L
Sbjct: 364 EVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEGEEKVILFNLSGHGLL 417
>gnl|CDD|235288 PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.
Length = 397
Score = 32.0 bits (74), Expect = 0.033
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 23 EVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVV 74
E V +T +EA++ +LL EG++ + S A A A+K+A ++IVV
Sbjct: 326 EYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAPTL-GKDQIIVV 376
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate
(PLP) dependent enzyme that catalyses the last reaction
in the synthesis of threonine from aspartate. It
proceeds by converting O-phospho-L-homoserine (OPH) into
threonine and inorganic phosphate. In plants, OPH is an
intermediate between the methionine and
threonine/isoleucine pathways. Thus threonine synthase
competes for OPH with cystathionine-gamma-synthase, the
first enzyme in the methionine pathway. These enzymes
are in general dimers. Members of this CD, Thr-synth_1,
are widely distributed in bacteria, archaea and higher
plants.
Length = 324
Score = 31.8 bits (73), Expect = 0.037
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 24 VVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIF 76
V V+ E ++ KLL EG+ V +S A+ A K+ + VV+
Sbjct: 264 AVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVVV 316
>gnl|CDD|119177 pfam10657, RC-P840_PscD, Photosystem P840 reaction centre protein
PscD. The photosynthetic reaction centres (RCs) of
aerotolerant organisms contain a heterodimeric core,
built up of two strongly homologous polypeptides each
of which contributes five transmembrane peptide helices
to hold a pseudo-symmetric double set of redox
components. Two molecules of PscD are housed within a
subunit. PscD may be involved in stabilising the PscB
component since it is found to co-precipitate with FMO
(Fenna-Mathews-Olson BChl a-protein) and PscB. It may
also be involved in the interaction with ferredoxin.
Length = 144
Score = 30.6 bits (69), Expect = 0.079
Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 48 GISSGAAAAAAIKI----AKRAENAGKLIVVIFPSSGERYLS--SEMFD 90
G SG AA A K AKR + GKL + I P+SG R LS EM D
Sbjct: 21 GPWSGNAAHKAEKYFITSAKR-DRNGKLQITISPASGRRKLSPTKEMID 68
>gnl|CDD|237087 PRK12391, PRK12391, tryptophan synthase subunit beta; Reviewed.
Length = 427
Score = 30.9 bits (71), Expect = 0.084
Identities = 20/62 (32%), Positives = 28/62 (45%)
Query: 23 EVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGER 82
E E + A L EG++ S A AAAI A +A+ G+ V++F SG
Sbjct: 355 EARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEKVILFNLSGHG 414
Query: 83 YL 84
L
Sbjct: 415 LL 416
>gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated.
Length = 442
Score = 30.6 bits (69), Expect = 0.11
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 22 DEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE-NAGKLIVVIFPSSG 80
V + E I + L AKEG+ +SS A +K+ + G +V++ SG
Sbjct: 296 GGTAVVVNEEEIMAGEKLLAKEGIFAELSSAVVMPALLKLGEEGYIEKGDKVVLVVTGSG 355
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.
Length = 402
Score = 30.2 bits (69), Expect = 0.14
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 23 EVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVV 74
E V T EA+ LL EG++ + S A A AIK+A + + I+V
Sbjct: 330 EYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAP-ELSKDETILV 380
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino
acid degradation is the removal of nitrogen. Although
the nitrogen atoms of most amino acids are transferred
to alpha-ketoglutarate before removal, the alpha-amino
group of threonine can be directly converted into NH4+.
The direct deamination is catalyzed by threonine
dehydratase, in which pyridoxal phosphate (PLP) is the
prosthetic group. Threonine dehydratase is widely
distributed in all three major phylogenetic divisions.
Length = 304
Score = 30.1 bits (69), Expect = 0.15
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 21 LDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVI 75
+D+VV V+ +E LL +E L+ +GA A AA+ + + + GK +VV+
Sbjct: 245 VDDVVTVSEDEIAAAMLLLFEREKLVAE-PAGALALAALL-SGKLDLKGKKVVVV 297
>gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2.
Length = 605
Score = 30.2 bits (68), Expect = 0.17
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 27 VTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAI-KIAKRAENAGKLIVVIFPSSGE---R 82
V + I A+ L K L+ G ++G A I KI + + GK+ ++I E
Sbjct: 105 VEMADGIGIAEFLRGKNFLITG-ATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIE 163
Query: 83 YLSSEMFDAE 92
L +E+ DAE
Sbjct: 164 RLKNEVIDAE 173
>gnl|CDD|224323 COG1405, SUA7, Transcription initiation factor TFIIIB, Brf1
subunit/Transcription initiation factor TFIIB
[Transcription].
Length = 285
Score = 29.6 bits (67), Expect = 0.21
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 21 LDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAEN 67
L + VR + E ++ AK + GL G S AAAAI +A
Sbjct: 207 LSDEVRRKAIEIVKKAK----RAGLTAGKSPAGLAAAAIYLASLLLG 249
>gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit. Tryptophan
synthase catalyzes the last step in the biosynthesis of
tryptophan. the beta chain contains the functional
domain for or the synthesis of tryptophan from indole
and serine. The enzyme requires pyridoxal-phosphate as a
cofactor. The pyridoxal-P attachment site is contained
within the conserved region
[LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P
attachment site] which is present between residues
90-100 of the model [Amino acid biosynthesis, Aromatic
amino acid family].
Length = 385
Score = 29.3 bits (66), Expect = 0.36
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 27 VTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIV 73
+T +EA++ KLL EG++ + S A A KIA ++V
Sbjct: 322 ITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAPTLPKDQIVVV 368
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate
isomerase/tryptophan synthase subunit beta; Provisional.
Length = 610
Score = 29.0 bits (65), Expect = 0.43
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 25 VRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGER 82
VT EA+ KLL EG++ + S + A A +K ++ +++V G++
Sbjct: 540 TSVTDEEALDAFKLLAKLEGIIPALES-SHALAYLKEGRKKFKKKDIVIVNLSGRGDK 596
>gnl|CDD|218483 pfam05183, RdRP, RNA dependent RNA polymerase. This family of
proteins are eukaryotic RNA dependent RNA polymerases.
These proteins are involved in post transcriptional gene
silencing where they are thought to amplify dsRNA
templates.
Length = 508
Score = 28.2 bits (63), Expect = 0.71
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 73 VVIFPSSGERYLSSEMF 89
VV+FPS G+R L+SE+
Sbjct: 387 VVVFPSKGDRPLASELS 403
>gnl|CDD|238309 cd00553, NAD_synthase, NAD+ synthase is a homodimer, which
catalyzes the final step in de novo nicotinamide
adenine dinucleotide (NAD+) biosynthesis, an amide
transfer from either ammonia or glutamine to nicotinic
acid adenine dinucleotide (NaAD). The conversion of
NaAD to NAD+ occurs via an NAD-adenylate intermediate
and requires ATP and Mg2+. The intemediate is
subsequently cleaved into NAD+ and AMP. In many
prokaryotes, such as E. coli , NAD synthetase consists
of a single domain and is strictly ammonia dependent.
In contrast, eukaryotes and other prokaryotes have an
additional N-terminal amidohydrolase domain that prefer
glutamine, Interestingly, NAD+ synthases in these
prokaryotes, can also utilize ammonia as an amide
source .
Length = 248
Score = 27.9 bits (63), Expect = 0.84
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 42 KEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAENM 99
+G+++G+S G +A +A RA ++ + PS RY S E + ++ AE +
Sbjct: 23 FKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPS---RYSSEETREDAKELAEAL 77
>gnl|CDD|217035 pfam02441, Flavoprotein, Flavoprotein. This family contains
diverse flavoprotein enzymes. This family includes
epidermin biosynthesis protein, EpiD, which has been
shown to be a flavoprotein that binds FMN. This enzyme
catalyzes the removal of two reducing equivalents from
the cysteine residue of the C-terminal meso-lanthionine
of epidermin to form a --C==C-- double bond. This
family also includes the B chain of dipicolinate
synthase a small polar molecule that accumulates to
high concentrations in bacterial endospores, and is
thought to play a role in spore heat resistance, or the
maintenance of heat resistance. dipicolinate synthase
catalyzes the formation of dipicolinic acid from
dihydroxydipicolinic acid. This family also includes
phenyl-acrylic acid decarboxylase (EC:4.1.1.-).
Length = 132
Score = 27.5 bits (62), Expect = 0.91
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 45 LLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSSEMFDAE 92
+L+GI+ +AA A+++ + + G + VI + +++++ E +A
Sbjct: 3 ILLGITGSSAAIKALRLLRELKKEGAEVRVILSKAAKKFITPETLEAL 50
>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional.
Length = 375
Score = 27.9 bits (62), Expect = 1.1
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 36 AKLLGAKEGLLVGISSGAAA-AAAIKIAKRAENAGKLIVVIFPSS 79
KL+G K+ L +SGA A AAIKIA++A GK ++ F +S
Sbjct: 77 QKLIGDKDYLAFFCNSGAEANEAAIKIARKA--TGKQEIITFQNS 119
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This
subfamily of the AAA family ATPases includes two
members each from three archaeal species. It also
includes yeast CDC48 (cell division control protein 48)
and the human ortholog, transitional endoplasmic
reticulum ATPase (valosin-containing protein). These
proteins in eukaryotes are involved in the budding and
transfer of membrane from the transitional endoplasmic
reticulum to the Golgi apparatus.
Length = 733
Score = 27.6 bits (61), Expect = 1.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 34 QTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVI 75
QTA LG + G V I G + AI R ++ G+ I+ +
Sbjct: 24 QTAARLGVEPGDFVEIEKGDRSVVAIVWPLRPDDEGRGIIRM 65
>gnl|CDD|235830 PRK06558, PRK06558, V-type ATP synthase subunit K; Validated.
Length = 159
Score = 27.3 bits (61), Expect = 1.4
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 44 GLLVGISSGAAAAAAIKI-AKRAENAGKLIV 73
GL IS G AAA I+I AKR E K I+
Sbjct: 105 GLFSAISQGKVAAAGIQILAKRPEEFTKGII 135
>gnl|CDD|238692 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A
(RPI_A) subfamily; RPI catalyzes the reversible
conversion of ribose-5-phosphate to ribulose
5-phosphate, the first step of the non-oxidative branch
of the pentose phosphate pathway. This reaction leads
to the conversion of phosphosugars into glycolysis
intermediates, which are precursors for the synthesis
of amino acids, vitamins, nucleotides, and cell wall
components. In plants, RPI is part of the Calvin cycle
as ribulose 5-phosphate is the carbon dioxide receptor
in the first dark reaction of photosynthesis. There are
two unrelated types of RPIs (A and B), which catalyze
the same reaction, at least one type of RPI is present
in an organism. RPI_A is more widely distributed than
RPI_B in bacteria, eukaryotes, and archaea.
Length = 213
Score = 27.4 bits (62), Expect = 1.4
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 42 KEGLLVGISSGAAAAAAIK-IAKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAEN 98
++G+++G+ +G+ A I+ + +R G IV + P+S F E A E
Sbjct: 14 EDGMVIGLGTGSTVAYFIEALGERVREEGLNIVGV-PTS---------FQTEELAREL 61
>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated.
Length = 319
Score = 27.4 bits (61), Expect = 1.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 27 VTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVI 75
+ +E ++ A+LL EGL +S +A AA +K K+ ++ VI
Sbjct: 266 FSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNGVNDNVVAVI 314
>gnl|CDD|232896 TIGR00260, thrC, threonine synthase. Involved in threonine
biosynthesis it catalyses the reaction
O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE +
ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor.
the enzyme is distantly related to the serine/threonine
dehydratases which are also pyridoxal-phosphate
dependent enzymes. the pyridoxal-phosphate binding site
is a Lys (K) residues present at residue 70 of the model
[Amino acid biosynthesis, Aspartate family].
Length = 328
Score = 27.0 bits (60), Expect = 1.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 27 VTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAK 63
V+ E ++ KLL +EG V S + AA +K+ +
Sbjct: 269 VSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVE 305
>gnl|CDD|221395 pfam12048, DUF3530, Protein of unknown function (DUF3530). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 272 to 336 amino acids in length.
These proteins are distantly related to alpa/beta
hydrolases so they may act as enzymes.
Length = 294
Score = 26.6 bits (59), Expect = 2.2
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 30 NEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVV 74
I A G K +L+G +GA A K + L+++
Sbjct: 165 EALIAFASQYGGKNIVLLGHGTGAGWAIRYLAEKPSPAPDALVLI 209
>gnl|CDD|235757 PRK06260, PRK06260, threonine synthase; Validated.
Length = 397
Score = 26.8 bits (60), Expect = 2.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 25 VRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE 66
V+ E + KLL KEG+ V +S A+ A IK+ +
Sbjct: 311 EAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKLVEEGV 352
>gnl|CDD|212115 cd10804, YdjC_HpnK_like, hopanoid biosynthesis associated protein
HpnK and similar proteins. The subfamily includes some
uncharacterized proteins annotated as hopanoid
biosynthesis associated proteins, HpnK. They show high
sequence similarity to proteins from the YdjC-family,
the latter is represented by an uncharacterised protein
YdjC (also known as ChbG) encoded by the chb
(N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel
operon in Escherichia coli, which encodes enzymes
involved in growth on an N,N'-diacetylchitobiose carbon
source.
Length = 261
Score = 26.4 bits (59), Expect = 2.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 30 NEAIQTAKLLGAKEGLLVGIS---SGAAAAAAIKIAKR 64
NEA++ A +EG+L S G AA A+ A+R
Sbjct: 16 NEAVEQAH----REGILTSASLMVGGPAADDAVARARR 49
>gnl|CDD|236013 PRK07409, PRK07409, threonine synthase; Validated.
Length = 353
Score = 25.9 bits (58), Expect = 4.0
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 27 VTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE-NAGKLIV 73
VT E ++ +LL KEG+ +S A+ A +K + + G +V
Sbjct: 267 VTDEEILEAYRLLARKEGVFCEPASAASVAGLLKAIRAGKIPEGSTVV 314
>gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated.
Length = 394
Score = 26.1 bits (58), Expect = 4.1
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 12 VPSVL-DVSILDEVVRVT-------SNEAIQTA-KLLGAKEGLLVGISSGAAAAAAIKIA 62
VP L D +LD VR T S++AI A + L +EGL A AAA ++
Sbjct: 303 VPKALGDFLVLD-AVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQLR 361
Query: 63 KRAENAGKLIVVIF 76
+ G VV+F
Sbjct: 362 ESGWLKGDERVVLF 375
>gnl|CDD|106973 PHA00664, PHA00664, hypothetical protein.
Length = 140
Score = 25.6 bits (56), Expect = 4.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 50 SSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYL 84
+S ++ IAK + AGK +V+ P+ ERYL
Sbjct: 69 ASFSSVTDTGAIAKASLTAGKRVVIPMPTKLERYL 103
>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional.
Length = 317
Score = 25.8 bits (57), Expect = 4.4
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 20 ILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVI 75
++D+ V V+ E + +L+ + L+ ++G A AAA+K+A R + GK + V+
Sbjct: 248 LIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPRYQ--GKKVAVV 301
>gnl|CDD|132912 cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma
factor antagonist domain of the "stressosome" complex
proteins RsbS and RsbR, regulators of the bacterial
stress activated alternative sigma factor sigma-B by
phosphorylation. The STAS (Sulphate Transporter and
Anti-Sigma factor antagonist) domain of proteins
related to RsbS and RsbR which are part of the
"stressosome" complex that plays an important role in
the regulation of the bacterial stress activated
alternative sigma factor sigma-B. During stress
conditions RsbS and RsbR are phosphorylated which leads
to the release of RsbT, an activator of of the RsbU
phosphatase, which in turn activates RsbV which leads
to the release and activation of sigma factor B. RsbS
is a single domain protein (STAS domain), while
RsbR-like proteins have a well-conserved C-terminal
STATS domain and a variable N-terminal domain. The STAS
domain is also found in the C- terminal region of
sulphate transporters and anti-anti-sigma factors.
Length = 109
Score = 25.1 bits (56), Expect = 5.0
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 15 VLDVS---ILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAA 57
++D++ ++D V + +LLGA +L GI A
Sbjct: 45 IIDLTGVPVIDSAVARHLLRLARALRLLGA-RTILTGIRPEVAQTL 89
>gnl|CDD|181899 PRK09485, mmuM, homocysteine methyltransferase; Provisional.
Length = 304
Score = 25.6 bits (57), Expect = 5.1
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 55 AAAAIKIAKRAENAGKLIVVIFPSSGERY 83
AAI + K +VV +P+SGE Y
Sbjct: 228 VTAAIAALRA--VTDKPLVV-YPNSGEVY 253
>gnl|CDD|203486 pfam06616, BsuBI_PstI_RE, BsuBI/PstI restriction endonuclease
C-terminus. This family represents the C-terminus of
bacterial enzymes similar to type II restriction
endonucleases BsuBI and PstI (EC:3.1.21.4). The enzymes
of the BsuBI restriction/modification (R/M) system
recognise the target sequence 5'CTGCAG and are
functionally identical with those of the PstI R/M
system.
Length = 306
Score = 25.3 bits (56), Expect = 7.0
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 49 ISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSS 86
+S+ A A+ A + A I V FP+ E LS
Sbjct: 123 LSAYLLARVALVRAYASARAQDRIPVTFPNGEEITLSP 160
>gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional.
Length = 293
Score = 25.1 bits (55), Expect = 8.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 39 LGAKEGLLVGISSGAAAAAAIKIAKR 64
L K LL G SSG AAA + A+R
Sbjct: 38 LTGKRILLTGASSGIGEAAAEQFARR 63
>gnl|CDD|216783 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal
domain. This domain is involved in catalysis and may be
involved in binding beta-glucan. This domain is found
associated with pfam00933.
Length = 221
Score = 25.0 bits (55), Expect = 8.5
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 18 VSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFP 77
V+ LD + N + ++ A A+ AK A+ A IV +
Sbjct: 47 VTPLDGIRARAGNATVVVYGGSNLED-------DDTGIAEAVAAAKDADVA---IVFVGS 96
Query: 78 SSGERYLSSEMFDAE 92
+GE Y++ D
Sbjct: 97 DAGEGYINEVNGDRT 111
>gnl|CDD|109440 pfam00382, TFIIB, Transcription factor TFIIB repeat.
Length = 71
Score = 24.2 bits (53), Expect = 8.8
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 30 NEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAEN 67
+ A + AKL + LL G S + AAA + IA R E
Sbjct: 16 DAANELAKLA-LDDNLLKGRSPESIAAACLYIACRLEE 52
>gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated.
Length = 338
Score = 25.1 bits (55), Expect = 8.8
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 23 EVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
E + V+ NE ++ K L AK+GLLV SS AA K
Sbjct: 284 ECIVVSDNEIVEAWKEL-AKKGLLVEYSSATVYAAYKKY 321
>gnl|CDD|222074 pfam13362, Toprim_3, Toprim domain. The toprim domain is found
in a wide variety of enzymes involved in nucleic acid
manipulation.
Length = 95
Score = 24.2 bits (53), Expect = 9.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 51 SGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81
+ A AA K+A+R E AG + V+ P GE
Sbjct: 53 ANAGQKAAEKLAERLEAAGIEVSVLEPPEGE 83
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.341
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,360,416
Number of extensions: 476776
Number of successful extensions: 1066
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1050
Number of HSP's successfully gapped: 162
Length of query: 106
Length of database: 10,937,602
Length adjustment: 71
Effective length of query: 35
Effective length of database: 7,788,468
Effective search space: 272596380
Effective search space used: 272596380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)