RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 037531
(106 letters)
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 176 bits (450), Expect = 8e-57
Identities = 69/102 (67%), Positives = 85/102 (83%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
HKIQGIG GF+PSVL+V ++DEVV+V+S+E+I A+ L KEGLLVGISSGAAAAAAIK+
Sbjct: 221 HKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKL 280
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAENMAYVS 103
A+R ENAGKL V IFPS GERYLS+ +FDA R+ AE M + +
Sbjct: 281 AQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFEA 322
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 175 bits (445), Expect = 8e-56
Identities = 49/98 (50%), Positives = 66/98 (67%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
HKIQGIG GFVP VLD S++DEV+ V ++AI+TA L +G+ G S GA AA+KI
Sbjct: 226 HKIQGIGPGFVPDVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKI 285
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAENM 99
A+R E GK IV + PS GERYLS+ ++ + R ++
Sbjct: 286 AERPEMEGKTIVTVIPSFGERYLSTTLYRSVRDEVSSL 323
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 174 bits (442), Expect = 2e-54
Identities = 66/100 (66%), Positives = 79/100 (79%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
HKIQGIG GF+P LD I+DEV+ ++S EAI+TAK L KEGL+VGISSGAAAAAAIK+
Sbjct: 329 HKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKV 388
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAENMAY 101
AKR ENAGKLI V+FPS GERYLS+ +F + R+ E M
Sbjct: 389 AKRPENAGKLIAVVFPSFGERYLSTPLFQSIREEVEKMQP 428
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 169 bits (430), Expect = 1e-53
Identities = 38/104 (36%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
H IQGIG GF+P + +DE++ + + +A + A+ + +G++ G+SSGAA A +K
Sbjct: 232 HGIQGIGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKE 291
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAENMAYVSNI 105
A++ EN GK IV+I PS GERYLS++++ + + + + ++
Sbjct: 292 AEKPENEGKTIVIIVPSCGERYLSTDLYKIKDE-GTKIQILDSL 334
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 166 bits (424), Expect = 7e-53
Identities = 54/92 (58%), Positives = 68/92 (73%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
HKIQGIG GF+P LD+SI+D V V S+ A+ TA+ L A+EG+L GISSGAA AAA ++
Sbjct: 224 HKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRL 283
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFDAER 93
AK E A KLIVVI PS+ ERYLS+ +F+
Sbjct: 284 AKLPEFADKLIVVILPSASERYLSTALFEGIE 315
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 166 bits (422), Expect = 1e-52
Identities = 52/92 (56%), Positives = 68/92 (73%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
H IQGIG GFVP VLD ++DE++ V + +A+ A+ L +EGLLVGISSGAA AA+++
Sbjct: 221 HPIQGIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQV 280
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFDAER 93
A+R ENAGKLIVV+ P GERYLS+ +F
Sbjct: 281 ARRPENAGKLIVVVLPDFGERYLSTPLFADVA 312
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 157 bits (399), Expect = 3e-49
Identities = 49/91 (53%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
HKIQGIG GFVP +LD SI D V+ VT+ EA A+ +EG+L GISSGAA AA+K+
Sbjct: 218 HKIQGIGAGFVPDILDTSIYDGVITVTTEEAFAAARRAAREEGILGGISSGAAIHAALKV 277
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFDAE 92
AK GK ++ I PS+GERYLS+ ++ E
Sbjct: 278 AKE-LGKGKKVLAIIPSNGERYLSTPLYQFE 307
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 156 bits (398), Expect = 4e-49
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
H QG+G GF+P LD+S+LD V++V +A A+ L +EGL +G+SSG AA+++
Sbjct: 215 HGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQV 274
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFD 90
A+ GK + I P G +YLS+ ++
Sbjct: 275 ARE-LGPGKRVACISPDGGWKYLSTPLYA 302
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 150 bits (381), Expect = 2e-46
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
+ ++ + GFVP + D IL V + +A++ + L EG+ GIS+GA AA+ +
Sbjct: 219 YALRNMDEGFVPELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGV 278
Query: 62 AKRAENAGK--LIVVIFPSSGERYLSSEMFDAERQAAENM 99
A AG+ I ++ +G +YLS+ + AE
Sbjct: 279 GAGALAAGERADIALVVADAGWKYLSTGAYAGSLDDAETA 318
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 148 bits (375), Expect = 1e-45
Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
H IQGIG GFVP +LD S++DEV+ V EA + A+ L KEGLLVGISSGA AAA+K+
Sbjct: 219 HAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKV 278
Query: 62 AKRAENAGKLIVVIFPSSGERYLSS 86
A++ + +V + P ERYLS
Sbjct: 279 AQKLGPDAR-VVTVAPDHAERYLSI 302
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 138 bits (349), Expect = 7e-42
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
I+ ++P + + S++DEV+ + +A T + L +EG+ G+SSG A A A+++
Sbjct: 207 PGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRV 266
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAA 96
A N ++V I G+RYLS+ +F E +
Sbjct: 267 AA--ANPDAVVVAIICDRGDRYLSTGVFGEEHFSQ 299
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 133 bits (337), Expect = 2e-39
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 3 KIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIA 62
I+ + G + + + I + VT EA++ + +GL++G S GAA A K A
Sbjct: 295 GIRRVETGMLW-INMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKA 353
Query: 63 KRAENAGKLIVVIFPSSGERYLSSEMFDAE 92
+ VV+ P +G +YLS E
Sbjct: 354 AEGDLEPGDYVVVVPDTGFKYLSLVQNALE 383
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 133 bits (337), Expect = 2e-38
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
++++GIG F P+V D +++D ++ ++ ++ L A+EGLL G SSG A AA++
Sbjct: 275 YEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEH 334
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFD 90
A++ G+ VVI P Y++ + D
Sbjct: 335 ARK-LKKGQRCVVILPDGIRNYMTKFVSD 362
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 132 bits (333), Expect = 2e-38
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
++++GIG F+P+VLD +++D+ + EA A++L A+EGLL G S+G+ A A+K
Sbjct: 323 YEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKA 382
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFD 90
A+ G+ VVI P S Y++ + D
Sbjct: 383 AQE-LQEGQRCVVILPDSVRNYMTKFLSD 410
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 35.7 bits (83), Expect = 0.001
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 24 VVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE-NAGKLIVVIFPSSG 80
+ VT E + + L +EG+ +S AA A K+ + +V+ G
Sbjct: 263 IEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLTGHG 320
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 35.7 bits (83), Expect = 0.001
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 24 VVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE-NAGKLIVVIFPSSG 80
+ V+ +E + KL+ + EG+ +S A+ A IK+ + G+++ +G
Sbjct: 265 IDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGFFKGGEVVTCTLTGNG 322
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase,
tryptophan biosynthesis, pyridoxal phosphate; HET: IPL
PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB:
1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B*
2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B*
1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Length = 396
Score = 35.6 bits (83), Expect = 0.001
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 23 EVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVV 74
+ V +T +EA++ K L EG++ + S A A A+K+ + +L+VV
Sbjct: 322 DYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVV 373
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 35.4 bits (82), Expect = 0.001
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 24 VVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE-NAGKLIVVIFPSSG 80
+ + E + L+ EG+ V +S A+ A +K G +V +G
Sbjct: 272 FLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWVARGSTVVCTVTGNG 329
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 35.2 bits (81), Expect = 0.002
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 8/84 (9%)
Query: 29 SNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE-NAGKLIVVI-------FPSSG 80
+ E + A G+ + +G A A K+ + VV+ F S
Sbjct: 383 TEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSK 442
Query: 81 ERYLSSEMFDAERQAAENMAYVSN 104
Y S+ + D + + V
Sbjct: 443 IDYHSNAIPDMACRFSNPPVDVKA 466
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.002
Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 24/94 (25%)
Query: 35 TAKLLGAKEGLLVGISSGAA-------AAAAIKIAKRAE----NAGKLIVVIFPSSGER- 82
TAKLLG G L GA A AI E + K I V+F G R
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF-FIGVRC 310
Query: 83 -------YLSSEMFDAERQAAEN----MAYVSNI 105
L + + + E M +SN+
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural
genomics/proteomics initiative, structural genomics,
lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP:
c.79.1.1 PDB: 1wdw_B*
Length = 388
Score = 31.4 bits (72), Expect = 0.032
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 23 EVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVV 74
E V VT EA++ L EG++ + S A A A+K+AK + ++I+V
Sbjct: 318 EYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM-SRDEIIIV 368
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan
biosynthesis, structural genomics; 2.20A {Mycobacterium
tuberculosis} PDB: 2o2j_A
Length = 422
Score = 31.4 bits (72), Expect = 0.038
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 23 EVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVV 74
+ +T +EA+ LL EG++ I S A A A+K+ G +IVV
Sbjct: 349 DYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALKLGVEL-GRGAVIVV 399
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
2.50A {Thermus thermophilus}
Length = 418
Score = 31.0 bits (71), Expect = 0.043
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 23 EVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVV 74
E VT EA++ KLL EG++ + S A A A K+ + +++V+
Sbjct: 347 EYASVTDEEALEGFKLLARLEGIIPALESAHAIAYAAKVVPEM-DKDQVVVI 397
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 29.9 bits (68), Expect = 0.11
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 21 LDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIK-IAKRAENAGKLIVVI 75
LD+++ V S+ K L + SGA A A +K G+ + I
Sbjct: 259 LDDIITVDSDAICAAMKDLFEDVRAVAE-PSGALALAGMKKYIALHNIRGERLAHI 313
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 29.8 bits (67), Expect = 0.13
Identities = 8/46 (17%), Positives = 16/46 (34%)
Query: 21 LDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAE 66
LD ++ L +EG+ + S+ A A ++
Sbjct: 357 LDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVS 402
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 29.0 bits (66), Expect = 0.20
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 21 LDEVVRVTSNEAIQTAKLLGAKEGLLV-GISSGAAAAAAIKIAKRAENAGKLIVVI 75
+D+++ V+ E I K A+ ++V +G + AA A + + K I +I
Sbjct: 254 VDDILTVSDEELIDCLKFYAARMKIVVEP--TGCLSFAAA-RAMKEKLKNKRIGII 306
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 28.7 bits (65), Expect = 0.32
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 21 LDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENA-GKLIVVI 75
+D++ VT +E +L+ + LL+ ++G AA + + + K I ++
Sbjct: 256 VDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIV 311
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 28.3 bits (63), Expect = 0.47
Identities = 11/77 (14%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 5 QGIGIGFVPSVLDVSILDEVVR----VTSNEAIQTAKLLGAKEGLLVG-ISSGAAAAAAI 59
+ +G+ DV + + + + ++ +L EG+L + G + I
Sbjct: 244 EKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMI 303
Query: 60 KIAKRAE-NAGKLIVVI 75
++ + E G ++
Sbjct: 304 EMVRNGEFPEGSRVLYA 320
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 27.9 bits (63), Expect = 0.48
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 21 LDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAEN-AGKLIVVI 75
+D++V V+ +E + L + ++ +GA A AA+ K + + V I
Sbjct: 268 VDDIVLVSEDEIRNSMIALIQRNKVITE-GAGALACAALLSGKLDSHIQNRKTVSI 322
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 28.2 bits (63), Expect = 0.48
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 3/54 (5%)
Query: 21 LDEVVRVTSNEAIQTAKLLGAKEGLLVGIS---SGAAAAAAIKIAKRAENAGKL 71
+ + + A ++LG G I SGA + L
Sbjct: 306 ATQFISCQDSVAALGMRVLGNPYGNDPRIISGESGAVGLGVLAAVHYHPQRQSL 359
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 27.8 bits (63), Expect = 0.55
Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 21 LDEVVRVTSNEAIQTAKLLGAKEGLLV-GISSGAAAAAAIKIAKRAENAGKLIVVI 75
+D ++ V+ ++ +LL + +V +GA AA+ + + + ++
Sbjct: 250 VDGILTVSEEALLEAERLLFTRTKQVVEP--TGALPLAAVL--EHGARLPQTLALL 301
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 27.6 bits (62), Expect = 0.65
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 21 LDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIK-IAKRAENAGKLIVVI 75
+D +V V ++ K + + ++ +SGA A A + + + IV I
Sbjct: 288 IDGMVLVANDGISAAIKDVYDEGRNILE-TSGAVAIAGAAAYCEFYKIKNENIVAI 342
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae
PV}
Length = 422
Score = 27.0 bits (59), Expect = 1.3
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 34 QTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGE 81
+ + G K+ L++G SSG A+ I A + V F G
Sbjct: 54 RGVRNDGPKKVLVIGASSGYGLASRITAAFGF--GADTLGVFFEKPGT 99
>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD,
TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A
{Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A
Length = 334
Score = 26.3 bits (58), Expect = 2.1
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 56 AAAIKIAKRAENAGKLIVVIFPSSGERYLSSEMFD 90
A K A RA AG L + I G++ L +
Sbjct: 127 DLACKEASRAVAAGHLGIQIGNHLGDKDLDDATLE 161
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center
for structural genomics of infec diseases, csgid; 2.49A
{Clostridium difficile}
Length = 253
Score = 26.3 bits (59), Expect = 2.1
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 48 GISSGAAAAAAIKI 61
G+SS AA+++ +
Sbjct: 113 GVSSFLGAASSLGV 126
>1efp_A ETF, protein (electron transfer flavoprotein); electron
transport, glutaric acidemia type II; HET: FAD AMP;
2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
c.31.1.2
Length = 307
Score = 25.9 bits (58), Expect = 2.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 23 EVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIA 62
+ R + +A+ K LG L G S+ AAA A KIA
Sbjct: 12 ALNRDATAKAVAAVKALGDVTVLCAGASAKAAAEEAAKIA 51
>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 4dbl_A 1l7v_A*
Length = 326
Score = 25.7 bits (57), Expect = 3.0
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 46 LVGISSGAAAAAAIKI 61
L+G+S+GA +
Sbjct: 90 LLGVSNGAGVGLIAAV 105
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 3.2
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 31 EAIQTAKLLGAKEGLLVGISSGAAAAAAIK 60
+A++ KL + L + +A A AIK
Sbjct: 20 QALK--KL----QASLKLYADDSAPALAIK 43
>3big_A Fructose-1,6-bisphosphatase class II GLPX; carbohydrate
metabolism, hydrolase manganese; 1.85A {Escherichia
coli} PDB: 2r8t_A 3bih_A 1ni9_A 3d1r_A*
Length = 338
Score = 25.7 bits (57), Expect = 3.8
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 16 LDVSILDEVVRVTSNEAIQTAKLLGAKE 43
+ + E RVT + A+ K LG +
Sbjct: 3 MRRELAIEFSRVTESAALAGYKWLGRGD 30
>3roj_A D-fructose 1,6-bisphosphatase class 2/sedoheptulo bisphosphatase;
fructose-1,6-/sedoheptulose-1,7-bisphosphatase,
hydrolase; HET: AMP GOL; 2.30A {Synechocystis} PDB:
3rpl_A*
Length = 379
Score = 25.4 bits (56), Expect = 4.0
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 13 PSVLDVSILDEVVRVTSNEAIQTAKLLGAKE 43
+D ++ E++ V AI +AK +G E
Sbjct: 32 RGSVDSTLGLEIIEVVEQAAIASAKWMGKGE 62
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 25.3 bits (56), Expect = 4.0
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 21 LDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIK--IAKRAENAGKL 71
++ EA+ + E +LV + AA AA+ + ++ + G L
Sbjct: 276 PIFSEVISDQEAVAAIEKFVDDEKILVE-PACGAALAAVYSHVIQKLQLEGNL 327
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; 2.00A {Desulfitobacterium hafniense}
Length = 261
Score = 25.3 bits (56), Expect = 4.2
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 16/66 (24%)
Query: 24 VVRVTSNEAIQTAKLL--GAKEGLLV-GISSGAAAAAAIKIAKRAENAGKLIVVIFPSSG 80
+VR+ + +LL GA EG ++ G+ S +++AK +P G
Sbjct: 70 LVRIPQVDRAHVQRLLDIGA-EGFMIPGVQSAETMRETVRLAK------------YPPLG 116
Query: 81 ERYLSS 86
ER +
Sbjct: 117 ERGVGG 122
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A
{Rhodobacter capsulatus} PDB: 3nei_A
Length = 264
Score = 25.2 bits (56), Expect = 4.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 48 GISSGAAAAAAIKI 61
G+ S AAAAA +
Sbjct: 112 GVPSFAAAAATLGA 125
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase,
cobalamin biosynth methyltransferase; HET: SAH; 2.40A
{Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Length = 285
Score = 25.3 bits (56), Expect = 4.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 48 GISSGAAAAAAIKI 61
G++S AAAAA +
Sbjct: 129 GVTSVFAAAAAAEA 142
>3s3t_A Nucleotide-binding protein, universal stress PROT family;
structural genomics, PSI-biology, midwest center for
structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus
plantarum}
Length = 146
Score = 24.8 bits (55), Expect = 4.5
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 50 SSGAAAAAAIKIAKRAENAGKLIVV------IFPSSGERYLSSEMFDAERQAAEN 98
++ AA A+ IA+R + L + + + + SE+ DAE A++
Sbjct: 17 AAQAAFTEAVNIAQR--HQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKD 69
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation,
transferase; HET: TTP; 1.83A {Homo sapiens} PDB:
1xbt_A* 2wvj_A* 2j87_A*
Length = 195
Score = 25.0 bits (55), Expect = 5.4
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 59 IKIAKRAENAGKLIVVIFPSSGERY 83
++ +R + A +VI + RY
Sbjct: 38 MRRVRRFQIAQYKCLVIKYAKDTRY 62
>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron
chelatin ABC transporter, nucleotide binding domain;
2.40A {Haemophilus influenzae}
Length = 337
Score = 24.9 bits (55), Expect = 5.7
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 46 LVGISSGAAAAAAIKI 61
++G++SG+A + I
Sbjct: 96 IIGVTSGSAFGGTLAI 111
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12
protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of
homoprotocatechuate; 1.39A {Escherichia coli} PDB:
2vwt_A
Length = 267
Score = 24.9 bits (55), Expect = 6.1
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 24 VVRVTSNEAIQTAKLL--GAKEGLLV-GISSGAAAAAAIKIAK 63
V+R ++L GA + LL+ + + A + +
Sbjct: 72 VIRPVEGSKPLIKQVLDIGA-QTLLIPMVDTAEQARQVVSATR 113
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target,
NYSGXRC, PSI, protein structure initiative; 2.40A
{Mycobacterium tuberculosis} SCOP: c.26.2.4
Length = 163
Score = 24.5 bits (54), Expect = 6.1
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 46 LVGI----SSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAE 97
+VG SS A A +IA +A +I + E ++++ E
Sbjct: 21 VVGTDGSDSSMRAVDRAAQIAGA--DAKLIIASAYLPQHEDARAADILKDESYKVT 74
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II
aldolase, homoprotocatechuate, aromatic DEGR aromatic
hydrocarbons catabolism; 1.60A {Escherichia coli} PDB:
2v5k_A
Length = 287
Score = 25.0 bits (55), Expect = 6.1
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 16/62 (25%)
Query: 24 VVRVTSNEAIQTAKLL--GAKEGLLV-GISSGAAAAAAIKIAKRAENAGKLIVVIFPSSG 80
VVR + N+ +Q +LL G + LLV + + A A++ + +P +G
Sbjct: 93 VVRPSWNDPVQIKQLLDVGT-QTLLVPMVQNADEAREAVRATR------------YPPAG 139
Query: 81 ER 82
R
Sbjct: 140 IR 141
>3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus}
Length = 357
Score = 24.8 bits (54), Expect = 7.5
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 56 AAAIKIAKRAENAGKLI-VVIFPSSGERYLSSEMFD 90
AA + +R N +I + + +L + +D
Sbjct: 141 EAAAREFERCINDLGFKGALIMGRAQDGFLDQDKYD 176
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'-
(2'deoxythymidil))tetraphosphate, transferase; HET:
4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Length = 234
Score = 24.7 bits (54), Expect = 7.7
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 59 IKIAKRAENAGKLIVVIFPSSGERY 83
++ +R + A +VI + RY
Sbjct: 37 MRRVRRFQIAQYKCLVIKYAKDTRY 61
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A
{Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Length = 256
Score = 24.5 bits (54), Expect = 8.0
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 16/62 (25%)
Query: 24 VVRVTSNEAIQTAKLL--GAKEGLLV-GISSGAAAAAAIKIAKRAENAGKLIVVIFPSSG 80
VVRV +NE + +LL G L+ + + A A+ + +P G
Sbjct: 73 VVRVPTNEPVIIKRLLDIGF-YNFLIPFVETKEEAELAVASTR------------YPPEG 119
Query: 81 ER 82
R
Sbjct: 120 IR 121
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.50A {Bacillus
anthracis str} SCOP: d.157.1.9
Length = 268
Score = 24.6 bits (54), Expect = 8.5
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 28 TSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRA 65
S E AK KE LL + A + AK+
Sbjct: 215 NSTEVASIAKDANVKELLLTHLPHTGNPADLVTEAKQI 252
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.341
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,632,272
Number of extensions: 98226
Number of successful extensions: 603
Number of sequences better than 10.0: 1
Number of HSP's gapped: 587
Number of HSP's successfully gapped: 138
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)