RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 037531
(106 letters)
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 120 bits (302), Expect = 2e-35
Identities = 69/100 (69%), Positives = 84/100 (84%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
HKIQGIG GF+PSVL+V ++DEVV+V+S+E+I A+ L KEGLLVGISSGAAAAAAIK+
Sbjct: 219 HKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKL 278
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFDAERQAAENMAY 101
A+R ENAGKL V IFPS GERYLS+ +FDA R+ AE M +
Sbjct: 279 AQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTF 318
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 109 bits (273), Expect = 3e-31
Identities = 54/88 (61%), Positives = 67/88 (76%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
HKIQGIG GF+P LD+SI+D V V S+ A+ TA+ L A+EG+L GISSGAA AAA ++
Sbjct: 223 HKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRL 282
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMF 89
AK E A KLIVVI PS+ ERYLS+ +F
Sbjct: 283 AKLPEFADKLIVVILPSASERYLSTALF 310
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 107 bits (268), Expect = 2e-30
Identities = 45/84 (53%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
H IQGIG GFVP +LD S++DEV+ V EA + A+ L KEGLLVGISSGA AAA+K+
Sbjct: 209 HAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKV 268
Query: 62 AKRAENAGKLIVVIFPSSGERYLS 85
A++ +V + P ERYLS
Sbjct: 269 AQKLG-PDARVVTVAPDHAERYLS 291
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 101 bits (253), Expect = 3e-28
Identities = 45/80 (56%), Positives = 58/80 (72%)
Query: 1 HHKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIK 60
HKIQGIG GF+P LD+ ++D+VV +T+ EAI TA+ L +EG+L GISSGAA AAA+K
Sbjct: 223 PHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALK 282
Query: 61 IAKRAENAGKLIVVIFPSSG 80
+ + K IVVI PSSG
Sbjct: 283 LQEDESFTNKNIVVILPSSG 302
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 99.2 bits (246), Expect = 3e-27
Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
H QG+G GF+P LD+S+LD V++V +A A+ L +EGL +G+SSG AA+++
Sbjct: 215 HGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQV 274
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMF 89
A+ GK + I P G +YLS+ ++
Sbjct: 275 ARE-LGPGKRVACISPDGGWKYLSTPLY 301
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 98.3 bits (244), Expect = 2e-26
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 1 HHKIQGIGIGFV-PSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAI 59
I+ + G + ++LD+S + VT EA++ + +GL++G S GAA A
Sbjct: 292 IPGIRRVETGMLWINMLDIS--YTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALA 349
Query: 60 KIAKRAENAGKLIVVIFPSSGERYLSSEMFDA 91
K A + VV+ P +G +YLS + +A
Sbjct: 350 KKAAEGDLEPGDYVVVVPDTGFKYLSL-VQNA 380
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 96.5 bits (239), Expect = 6e-26
Identities = 33/90 (36%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
++++GIG F+P+VLD +++D+ + EA A++L A+EGLL G S+G+ A A+K
Sbjct: 259 YEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKA 318
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMFDA 91
A+ + G+ VVI P S Y++ + D
Sbjct: 319 AQELQ-EGQRCVVILPDSVRNYMTKFLSDR 347
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 93.5 bits (231), Expect = 4e-25
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
I+ ++P + + S++DEV+ + +A T + L +EG+ G+SSG A A A+++
Sbjct: 206 PGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRV 265
Query: 62 AKRAENAGKLIVVIFPSSGERYLSSEMF 89
AK N ++V I G+RYLS+ +F
Sbjct: 266 AK--ANPDAVVVAIICDRGDRYLSTGVF 291
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 68.0 bits (165), Expect = 2e-15
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 2 HKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKI 61
+ G+G + L E V VT EA++ L EG++ + S A A A+K+
Sbjct: 297 PGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKL 356
Query: 62 AKRAENAGKLIVVIFPSSGERYLSS 86
AK + ++I+V G++ L
Sbjct: 357 AKE-MSRDEIIIVNLSGRGDKDLDI 380
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 62.3 bits (150), Expect = 1e-13
Identities = 9/75 (12%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 1 HHKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIK 60
++ + +G + +D ++ V+ ++ +LL + +V + AA ++
Sbjct: 229 ADGVRTLSLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLE 288
Query: 61 IAKRAENAGKLIVVI 75
R + + ++
Sbjct: 289 HGAR---LPQTLALL 300
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 61.0 bits (147), Expect = 5e-13
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 1 HHKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIK 60
+ +G + L+ + V +T +EA++ K L EG++ + S A A A+K
Sbjct: 300 SAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALK 359
Query: 61 IAKRAENAGKLIVVI 75
+ + +L+VV
Sbjct: 360 MMREQPEKEQLLVVN 374
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 59.5 bits (143), Expect = 2e-12
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 8 GIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAEN 67
IG L LD+++ V S+ K L + S A A K
Sbjct: 242 RIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNI 301
Query: 68 AGKLIVVIFP-----SSGERYLS 85
G+ + I G RY+S
Sbjct: 302 RGERLAHILSGANVNFHGLRYVS 324
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 54.9 bits (131), Expect = 8e-11
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 1 HHKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIK 60
Q +G + +D+++ V+ E I K A+ ++V + + AAA
Sbjct: 229 ADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAARA 288
Query: 61 IAKRAENAGKLIVVI 75
+ + + K I +I
Sbjct: 289 MKE--KLKNKRIGII 301
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 53.9 bits (128), Expect = 2e-10
Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 1 HHKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVG-ISSGAAAAAAI 59
+ +G+ + E Q + +G +EG+++ + +G A +
Sbjct: 232 KEAAELLGVKVEVRPELYDYSFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLV 291
Query: 60 KIAKRAENAGKLIVVI 75
+A++ E G+ I+ I
Sbjct: 292 DLARKGE-LGEKILFI 306
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 53.2 bits (126), Expect = 4e-10
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 1/86 (1%)
Query: 1 HHKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIK 60
+I + VT E + + L +EG+ +S AA A K
Sbjct: 240 AIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFK 299
Query: 61 IAKRAE-NAGKLIVVIFPSSGERYLS 85
+ + +V+ G + +
Sbjct: 300 LLREGRLEPESTVVLTLTGHGLKDPA 325
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 50.8 bits (120), Expect = 2e-09
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Query: 1 HHKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVG-ISSGAAAAAAI 59
I VLD + + ++ +L EG+L + G + I
Sbjct: 244 EKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMI 303
Query: 60 KIAKRAE-NAGKLIVVI 75
++ + E G ++
Sbjct: 304 EMVRNGEFPEGSRVLYA 320
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 49.7 bits (117), Expect = 5e-09
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 1 HHKIQGIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVG-ISSGAAAAAAI 59
K+ G+ F LD V + I+ + +EG+L + G + I
Sbjct: 245 TAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLI 304
Query: 60 KIAKRAE-NAGKLIVVI 75
+ K G ++ +
Sbjct: 305 ALIKEDYFKPGANVLYV 321
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 49.2 bits (116), Expect = 9e-09
Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 8/107 (7%)
Query: 6 GIGIGFVPSVLDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRA 65
G + +V + + +V + E + A G+ + +G A A K+ +
Sbjct: 351 GDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQG 410
Query: 66 E-NAGKLIVVI-------FPSSGERYLSSEMFDAERQAAENMAYVSN 104
VV+ F S Y S+ + D + + V
Sbjct: 411 VIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSNPPVDVKA 457
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 41.3 bits (95), Expect = 5e-06
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 7/80 (8%)
Query: 21 LDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIK-------IAKRAENAGKLIV 73
++ EA+ + E +LV + GAA AA + +V
Sbjct: 237 PIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLV 296
Query: 74 VIFPSSGERYLSSEMFDAER 93
VI L+ E+
Sbjct: 297 VIVCGGSNISLAQLRALKEQ 316
>d1qqp1_ b.121.4.1 (1:) Aphthovirus (Foot-and-mouth disease virus)
coat proteins {FMDV (Foot-and-mouth disease virus),
strain bfs, 1860 [TaxId: 12110]}
Length = 210
Score = 31.3 bits (71), Expect = 0.013
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 17 DVS-ILDEVVRVTSNEAIQTAKLLGAKEGLLVG 48
DVS I+D V+VT I L+ LVG
Sbjct: 31 DVSFIMDRFVKVTPQNQINILDLMQVPSHTLVG 63
>d1fmd1_ b.121.4.1 (1:) Aphthovirus (Foot-and-mouth disease virus)
coat proteins {FMDV (Foot-and-mouth disease virus),
strain bfs, 1860 [TaxId: 12110]}
Length = 207
Score = 29.7 bits (67), Expect = 0.047
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 17 DVS-ILDEVVRVTSNEAIQTAKLLGAKEGLLVG 48
DV+ +LD V+VT ++ T ++ A + +VG
Sbjct: 31 DVAFVLDRFVKVTVSDNQHTLDVMQAHKDNIVG 63
>d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]}
Length = 175
Score = 26.2 bits (57), Expect = 0.72
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 41 AKEGLLVGISSGAAAAAAIKIAKRAENAG 69
A G+ G +G A I K+
Sbjct: 1 AITGIFFGSDTGNTENIAKMIQKQLGKDV 29
>d1ni9a_ e.7.1.2 (A:) Glycerol metabolism protein GlpX
{Escherichia coli [TaxId: 562]}
Length = 328
Score = 25.6 bits (56), Expect = 1.5
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 16 LDVSILDEVVRVTSNEAIQTAKLLGAKEGLLVGISSGAAAAAAI 59
+ + E RVT + A+ K LG + ++ AA A+
Sbjct: 3 MRRELAIEFSRVTESAALAGYKWLGRGD----KNTADGAAVNAM 42
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling
factor, TRCF {Escherichia coli [TaxId: 562]}
Length = 308
Score = 25.3 bits (54), Expect = 1.9
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 56 AAAIKIAKRAENAGKLIVVIFPSSGE-RYLSSEM 88
A A +A+ AE +V+I P L E+
Sbjct: 1 ACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI 34
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus
subtilis [TaxId: 1423]}
Length = 307
Score = 25.1 bits (53), Expect = 2.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 28 TSNEAIQTAKLLGAKEGLLVGISSGAAAAAAIKIAKRAENAGKLIVV 74
T+ +A TAK AK+ +L IS+ A++++ K A + V
Sbjct: 249 TTEQAAVTAKEARAKQLILTHISARYQGDASLELQKEAVDVFPNSVA 295
>d1fuia1 b.43.2.1 (A:356-591) L-fucose isomerase, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 236
Score = 24.8 bits (54), Expect = 2.5
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 29 SNEAIQTA---KLLG-AKEGLLVGISSGAAA 55
S EAI+ KL G A+ G++ I+SG+AA
Sbjct: 12 SPEAIERVTGHKLDGLAEHGIIHLINSGSAA 42
>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A
subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 356
Score = 24.9 bits (53), Expect = 2.7
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 49 ISSGAAA-AAAIKIAKRAENAGKLIVVI 75
I G + AA + A A+ G + ++
Sbjct: 27 IGGGFSGCGAAYEAAYWAKLGGLKVTLV 54
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 24.5 bits (52), Expect = 3.8
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 40 GAKEGLLVGISSGAAAAAAIKIAKRA 65
+ L++GIS G + A K+ + A
Sbjct: 37 PFIKSLVLGISGGQDSTLAGKLCQMA 62
>d2rcfa1 b.40.15.1 (A:1-82) Carboxysome shell protein
{Thiobacillus neapolitanus [TaxId: 927]}
Length = 82
Score = 22.7 bits (49), Expect = 6.1
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 39 LGAKEGLLVGISSGAAAAAA 58
+G G V +AA A
Sbjct: 42 IGCIPGDWVLCVGSSAAREA 61
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 23.3 bits (50), Expect = 6.8
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 4/52 (7%)
Query: 44 GLLVGISSGAAAAAAIKIAKRAENAGKLIVVIFPSSGERYLSSEMFDAERQA 95
+ G G A +A A G L V + S E QA
Sbjct: 90 FVTAGEGGGTGTGGAPVVASIARKLGALTVGVVTRP----FSFEGKRRSNQA 137
>d1fs7a_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 471
Score = 23.5 bits (50), Expect = 7.1
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 20 ILDEVVRVTSNEAIQTAKLL---GAKEGLLVGISSGAAAAAAIKIAKRAENAGKL 71
+L I+ K+L GA + + + A K+ A A KL
Sbjct: 377 LLASGNEEAQKARIKLVKVLAKYGAIDYVAPDFETKEKAQKLAKVDMEAFIAEKL 431
>d2hd3a1 b.40.15.1 (A:1-95) Ethanolamine utilization protein EutN
{Escherichia coli [TaxId: 562]}
Length = 95
Score = 22.7 bits (49), Expect = 7.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 39 LGAKEGLLVGISSGAAAAAA 58
+GA G V + SG++A A
Sbjct: 47 IGAGTGEWVLLVSGSSARQA 66
>d2qw7a1 b.40.15.1 (A:1-96) Carbon dioxide concentrating mechanism
protein CcmL {Synechocystis sp. (strain PCC 6803)
[TaxId: 1148]}
Length = 96
Score = 22.3 bits (48), Expect = 9.7
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 39 LGAKEGLLVGISSGAAAAAA 58
+GA V ++ G+AA
Sbjct: 47 VGAGLNEWVLVARGSAARKE 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.341
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 357,208
Number of extensions: 14604
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 44
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)