BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037533
(297 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86B14|MCM6_DICDI DNA replication licensing factor mcm6 OS=Dictyostelium discoideum
GN=mcm6 PE=3 SV=1
Length = 867
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 12/179 (6%)
Query: 108 IIFNTGHWWTHDKTAEGKDYYQEGSHVYGELNVLEAFRRALTTWARWVDANVNPMKSMVF 167
II A GKD + G +L V E R + +++ V +NV+ + S+
Sbjct: 313 IIKGVASSTKEGSNANGKDDFG-GVGGLKDLGVREMNYR-VCFFSQSVRSNVSTLSSI-- 368
Query: 168 FRGYSASHFSGGQWNSGGACDHETEPIKNKTYLTAYPPKMKVLESVLKGMKTHVTYLNIT 227
R S + GG +S G D + EP +++L + P K K +S+ K +K+ Y N+
Sbjct: 369 NRKESGDNH-GGHSHSVGIIDEDLEPESKESFLDSLPKKEK--DSLKKMIKSKKIYQNLV 425
Query: 228 RLTDYRKDGHPSIYRKQHI---SDAERRSP--LRYQDCSHWCLPGVPDAWNELFYAELI 281
GH I R + +++P +R + + C+ G P F L+
Sbjct: 426 NSICPSIFGHEEIKRGVLLMLFGGVHKKTPEKIRLRGDINVCIVGDPSTSKSTFLKYLV 484
>sp|P0AD68|FTSI_ECOLI Peptidoglycan synthase FtsI OS=Escherichia coli (strain K12)
GN=ftsI PE=1 SV=1
Length = 588
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 25/127 (19%)
Query: 134 VYGELNVLEAFRRALTTWARWVDANVNPMKSMVFFRGYSASHFSGGQWNSGGACDHETEP 193
VY ELN AF +A + A VD N + +M Y+ ++ SG E
Sbjct: 244 VYRELNNAVAFNKAESGSAVLVDVNTGEVLAMANSPSYNPNNLSG----------TPKEA 293
Query: 194 IKNKTYLTAYPP-----KMKVLESVLKGMKTHVTYLNITRLTDYRKDGHPSIYRKQHISD 248
++N+T + P M V+ ++ +G+ + LN YR +GH I D
Sbjct: 294 MRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNT---IPYRINGH-------EIKD 343
Query: 249 AERRSPL 255
R S L
Sbjct: 344 VARYSEL 350
>sp|P0AD69|FTSI_ECO57 Peptidoglycan synthase FtsI OS=Escherichia coli O157:H7 GN=ftsI
PE=3 SV=1
Length = 588
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 25/127 (19%)
Query: 134 VYGELNVLEAFRRALTTWARWVDANVNPMKSMVFFRGYSASHFSGGQWNSGGACDHETEP 193
VY ELN AF +A + A VD N + +M Y+ ++ SG E
Sbjct: 244 VYRELNNAVAFNKAESGSAVLVDVNTGEVLAMANSPSYNPNNLSG----------TPKEA 293
Query: 194 IKNKTYLTAYPP-----KMKVLESVLKGMKTHVTYLNITRLTDYRKDGHPSIYRKQHISD 248
++N+T + P M V+ ++ +G+ + LN YR +GH I D
Sbjct: 294 MRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNT---IPYRINGH-------EIKD 343
Query: 249 AERRSPL 255
R S L
Sbjct: 344 VARYSEL 350
>sp|A6LWJ5|MUTS_CLOB8 DNA mismatch repair protein MutS OS=Clostridium beijerinckii
(strain ATCC 51743 / NCIMB 8052) GN=mutS PE=3 SV=1
Length = 928
Score = 31.6 bits (70), Expect = 6.8, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 70 SPFLVQEWEMPE--KDGTKKETLRLDLVGRSSDQYKGADI 107
S F+V+ WE+ K+ T K + LD VGR + Y G I
Sbjct: 667 STFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSI 706
>sp|C1FNT9|MUTS_CLOBJ DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
Kyoto / Type A2) GN=mutS PE=3 SV=1
Length = 932
Score = 31.6 bits (70), Expect = 7.7, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 70 SPFLVQEWEMPE--KDGTKKETLRLDLVGRSSDQYKGADI 107
S F+V+ WE+ K+ T K + LD VGR + Y G I
Sbjct: 669 STFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSI 708
>sp|B1KSA3|MUTS_CLOBM DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
Loch Maree / Type A3) GN=mutS PE=3 SV=1
Length = 932
Score = 31.6 bits (70), Expect = 7.9, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 70 SPFLVQEWEMPE--KDGTKKETLRLDLVGRSSDQYKGADI 107
S F+V+ WE+ K+ T K + LD VGR + Y G I
Sbjct: 669 STFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSI 708
>sp|B1IM68|MUTS_CLOBK DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
Okra / Type B1) GN=mutS PE=3 SV=1
Length = 932
Score = 31.6 bits (70), Expect = 8.1, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 70 SPFLVQEWEMPE--KDGTKKETLRLDLVGRSSDQYKGADI 107
S F+V+ WE+ K+ T K + LD VGR + Y G I
Sbjct: 669 STFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSI 708
>sp|A5I2S2|MUTS_CLOBH DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
Hall / ATCC 3502 / NCTC 13319 / Type A) GN=mutS PE=3
SV=1
Length = 932
Score = 31.6 bits (70), Expect = 8.1, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 70 SPFLVQEWEMPE--KDGTKKETLRLDLVGRSSDQYKGADI 107
S F+V+ WE+ K+ T K + LD VGR + Y G I
Sbjct: 669 STFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSI 708
>sp|C3KX35|MUTS_CLOB6 DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
657 / Type Ba4) GN=mutS PE=3 SV=1
Length = 932
Score = 31.6 bits (70), Expect = 8.1, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 70 SPFLVQEWEMPE--KDGTKKETLRLDLVGRSSDQYKGADI 107
S F+V+ WE+ K+ T K + LD VGR + Y G I
Sbjct: 669 STFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSI 708
>sp|A7FUL0|MUTS_CLOB1 DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
ATCC 19397 / Type A) GN=mutS PE=3 SV=1
Length = 932
Score = 31.6 bits (70), Expect = 8.1, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 70 SPFLVQEWEMPE--KDGTKKETLRLDLVGRSSDQYKGADI 107
S F+V+ WE+ K+ T K + LD VGR + Y G I
Sbjct: 669 STFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSI 708
>sp|A5N8I5|MUTS_CLOK5 DNA mismatch repair protein MutS OS=Clostridium kluyveri (strain
ATCC 8527 / DSM 555 / NCIMB 10680) GN=mutS PE=3 SV=1
Length = 871
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 70 SPFLVQEWEMPE--KDGTKKETLRLDLVGRSSDQYKGADI 107
S F+V+ WE+ K+ T K + LD VGR + Y G I
Sbjct: 670 STFMVEMWEVSNILKNATNKSLILLDEVGRGTSTYDGLSI 709
>sp|B9E1Z0|MUTS_CLOK1 DNA mismatch repair protein MutS OS=Clostridium kluyveri (strain
NBRC 12016) GN=mutS PE=3 SV=1
Length = 871
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 70 SPFLVQEWEMPE--KDGTKKETLRLDLVGRSSDQYKGADI 107
S F+V+ WE+ K+ T K + LD VGR + Y G I
Sbjct: 670 STFMVEMWEVSNILKNATNKSLILLDEVGRGTSTYDGLSI 709
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,620,379
Number of Sequences: 539616
Number of extensions: 5133690
Number of successful extensions: 9769
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 9768
Number of HSP's gapped (non-prelim): 18
length of query: 297
length of database: 191,569,459
effective HSP length: 117
effective length of query: 180
effective length of database: 128,434,387
effective search space: 23118189660
effective search space used: 23118189660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)