BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037534
         (108 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
          Adp-Ribosylation Factor Gtpaseactivating Protein 3
          (Arfgap 3)
          Length = 149

 Score = 26.9 bits (58), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 17/64 (26%)

Query: 47 NPRCIECKAK---------GVVLCATCSGS----GLYVDSI----LESQGVIVKVPCLGC 89
          N  C +C AK         GV LC  CSGS    G+++  I    L+S     ++ C+  
Sbjct: 29 NKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQV 88

Query: 90 GGTG 93
          GG  
Sbjct: 89 GGNA 92


>pdb|2E68|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
           Dehydrogenase In Complex With Dihydroorotate
 pdb|2E68|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
           Dehydrogenase In Complex With Dihydroorotate
 pdb|2E6A|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
           Dehydrogenase In Complex With Orotate
 pdb|2E6A|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
           Dehydrogenase In Complex With Orotate
 pdb|2E6D|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
           Dehydrogenase In Complex With Fumarate
 pdb|2E6D|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
           Dehydrogenase In Complex With Fumarate
 pdb|2E6F|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
           Dehydrogenase In Complex With Oxonate
 pdb|2E6F|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
           Dehydrogenase In Complex With Oxonate
          Length = 314

 Score = 25.8 bits (55), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 58  VVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTG 93
            V C    G+GL +D+  ES+ V++K P  G GG G
Sbjct: 191 FVTCVNSVGNGLVIDA--ESESVVIK-PKQGFGGLG 223


>pdb|3C3N|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
           Trypanosoma Cruzi Strain Y
 pdb|3C3N|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
           Trypanosoma Cruzi Strain Y
 pdb|3C3N|C Chain C, Crystal Structure Of Dihydroorotate Dehydrogenase From
           Trypanosoma Cruzi Strain Y
 pdb|3C3N|D Chain D, Crystal Structure Of Dihydroorotate Dehydrogenase From
           Trypanosoma Cruzi Strain Y
          Length = 312

 Score = 25.4 bits (54), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 58  VVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTG 93
            V C    G+GL +D+  ES+ V++K P  G GG G
Sbjct: 189 FVTCVNSVGNGLVIDA--ESESVVIK-PKQGFGGLG 221


>pdb|2DJL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
           Dehydrogenase In Complex With Succinate
 pdb|2DJL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
           Dehydrogenase In Complex With Succinate
 pdb|2DJX|A Chain A, Crystal Structure Of Native Trypanosoma Cruzi
           Dihydroorotate Dehydrogenase
 pdb|2DJX|B Chain B, Crystal Structure Of Native Trypanosoma Cruzi
           Dihydroorotate Dehydrogenase
          Length = 314

 Score = 25.4 bits (54), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 58  VVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTG 93
            V C    G+GL +D+  ES+ V++K P  G GG G
Sbjct: 191 FVTCVNSVGNGLVIDA--ESESVVIK-PKQGFGGLG 223


>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
           1,3-Diphosphate
 pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
           1,3-Diphosphate
          Length = 125

 Score = 25.4 bits (54), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 78  QGVIVKVPCLGCGGTGNIMCAECGGRGHCSP 108
           +G  V V    C   GNI CAEC  +   +P
Sbjct: 77  KGFSVTVRRHHCRQCGNIFCAECSAKNALTP 107


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.135    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,402,979
Number of Sequences: 62578
Number of extensions: 123710
Number of successful extensions: 302
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 16
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)