Query 037534
Match_columns 108
No_of_seqs 171 out of 1150
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 13:13:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 2E-21 4.2E-26 153.1 8.9 95 11-107 90-210 (371)
2 PRK14282 chaperone protein Dna 99.8 1.2E-18 2.6E-23 137.3 9.8 94 14-107 103-222 (369)
3 PRK14298 chaperone protein Dna 99.8 8.6E-19 1.9E-23 138.6 8.9 96 12-107 92-211 (377)
4 PRK14286 chaperone protein Dna 99.8 1.3E-18 2.7E-23 137.4 8.7 92 12-107 96-216 (372)
5 PRK14276 chaperone protein Dna 99.8 1.7E-18 3.8E-23 136.9 9.0 96 12-107 96-216 (380)
6 PRK14280 chaperone protein Dna 99.8 2.6E-18 5.5E-23 135.8 9.1 96 12-107 93-213 (376)
7 TIGR02349 DnaJ_bact chaperone 99.8 3.3E-18 7.2E-23 133.8 9.7 96 12-107 91-213 (354)
8 PRK14278 chaperone protein Dna 99.8 2.9E-18 6.3E-23 135.6 9.2 96 12-107 88-209 (378)
9 PRK14285 chaperone protein Dna 99.8 2.2E-18 4.8E-23 135.7 8.2 92 12-107 96-212 (365)
10 PRK14296 chaperone protein Dna 99.7 4.7E-18 1E-22 134.2 9.0 93 13-107 102-219 (372)
11 PRK14279 chaperone protein Dna 99.7 4.9E-18 1.1E-22 134.9 8.6 90 14-107 125-239 (392)
12 PRK14297 chaperone protein Dna 99.7 6.8E-18 1.5E-22 133.5 9.3 96 12-107 96-218 (380)
13 PRK14277 chaperone protein Dna 99.7 8E-18 1.7E-22 133.3 9.1 94 14-107 104-225 (386)
14 PRK10767 chaperone protein Dna 99.7 7.7E-18 1.7E-22 132.7 8.6 90 14-107 95-208 (371)
15 PRK14294 chaperone protein Dna 99.7 9.4E-18 2E-22 132.1 8.7 91 13-107 93-210 (366)
16 PRK14284 chaperone protein Dna 99.7 8.3E-18 1.8E-22 133.4 8.2 91 13-107 105-224 (391)
17 PRK14295 chaperone protein Dna 99.7 9.5E-18 2.1E-22 133.1 8.4 90 14-107 121-232 (389)
18 PRK14301 chaperone protein Dna 99.7 1E-17 2.2E-22 132.3 8.5 90 14-107 95-210 (373)
19 PRK14287 chaperone protein Dna 99.7 1.3E-17 2.8E-22 131.6 8.7 96 12-107 88-208 (371)
20 PRK14288 chaperone protein Dna 99.7 1.4E-17 3.1E-22 131.3 8.2 90 14-107 92-205 (369)
21 PTZ00037 DnaJ_C chaperone prot 99.7 3.2E-17 7E-22 131.4 9.1 95 11-107 102-221 (421)
22 PRK14281 chaperone protein Dna 99.7 3.3E-17 7.1E-22 130.3 8.9 82 26-107 134-232 (397)
23 PRK14300 chaperone protein Dna 99.7 5.1E-17 1.1E-21 128.2 8.6 78 26-107 116-211 (372)
24 PRK14290 chaperone protein Dna 99.7 1E-16 2.2E-21 126.2 9.6 95 11-107 91-218 (365)
25 PRK14293 chaperone protein Dna 99.7 1.3E-16 2.9E-21 125.9 9.1 95 13-107 88-213 (374)
26 PRK14289 chaperone protein Dna 99.7 1E-16 2.2E-21 127.0 8.4 83 25-107 124-224 (386)
27 PRK14292 chaperone protein Dna 99.7 1.3E-16 2.8E-21 125.7 8.9 97 11-107 86-210 (371)
28 PRK14283 chaperone protein Dna 99.7 3.7E-16 7.9E-21 123.5 8.5 83 25-107 116-216 (378)
29 PRK14291 chaperone protein Dna 99.6 8.3E-16 1.8E-20 121.7 8.4 78 26-107 127-221 (382)
30 KOG0712 Molecular chaperone (D 99.6 2.4E-15 5.2E-20 117.5 7.1 89 16-107 83-199 (337)
31 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.4 8.3E-13 1.8E-17 81.2 5.9 55 50-104 1-66 (66)
32 PLN03165 chaperone protein dna 99.3 1.1E-11 2.4E-16 83.5 8.6 58 47-107 41-99 (111)
33 KOG2813 Predicted molecular ch 98.2 5.6E-07 1.2E-11 70.5 1.6 22 47-68 187-208 (406)
34 KOG0715 Molecular chaperone (D 98.2 1.1E-06 2.5E-11 67.7 2.9 93 10-106 117-229 (288)
35 COG0484 DnaJ DnaJ-class molecu 98.2 2.1E-06 4.5E-11 68.4 4.0 39 47-96 159-210 (371)
36 COG1107 Archaea-specific RecJ- 98.1 1.3E-06 2.9E-11 72.8 2.9 58 48-106 3-80 (715)
37 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.9 1E-05 2.2E-10 49.5 3.0 38 61-106 1-53 (66)
38 KOG2813 Predicted molecular ch 97.8 8.8E-06 1.9E-10 63.9 1.9 46 47-106 198-268 (406)
39 PRK14278 chaperone protein Dna 97.4 0.00017 3.6E-09 57.4 4.3 38 47-95 156-208 (378)
40 COG1107 Archaea-specific RecJ- 97.4 0.00015 3.2E-09 60.9 3.9 45 47-101 18-87 (715)
41 PRK14296 chaperone protein Dna 97.4 0.00025 5.5E-09 56.4 5.0 59 26-95 137-218 (372)
42 PRK14288 chaperone protein Dna 97.4 0.00027 5.9E-09 56.1 5.1 38 47-95 156-204 (369)
43 PRK14298 chaperone protein Dna 97.4 0.00011 2.3E-09 58.6 2.7 39 47-96 158-211 (377)
44 PRK14279 chaperone protein Dna 97.4 0.00011 2.4E-09 58.8 2.6 37 48-95 191-238 (392)
45 PRK14282 chaperone protein Dna 97.4 0.00025 5.5E-09 56.2 4.6 38 47-95 169-221 (369)
46 PRK14301 chaperone protein Dna 97.4 0.0002 4.3E-09 56.9 3.9 38 47-95 161-209 (373)
47 PRK14300 chaperone protein Dna 97.4 0.00013 2.8E-09 57.9 2.7 38 47-95 162-210 (372)
48 PRK14286 chaperone protein Dna 97.3 0.00017 3.8E-09 57.2 2.7 39 47-96 167-216 (372)
49 PRK14285 chaperone protein Dna 97.3 0.00019 4E-09 56.9 2.6 38 47-95 163-211 (365)
50 PRK14294 chaperone protein Dna 97.3 0.00019 4.1E-09 56.8 2.6 39 47-96 161-210 (366)
51 PRK14280 chaperone protein Dna 97.3 0.0002 4.2E-09 57.0 2.7 39 47-96 160-213 (376)
52 PRK14295 chaperone protein Dna 97.2 0.00021 4.5E-09 57.1 2.8 38 47-95 183-231 (389)
53 PRK14284 chaperone protein Dna 97.2 0.00017 3.7E-09 57.6 2.1 38 47-95 175-223 (391)
54 PRK14289 chaperone protein Dna 97.2 0.00037 8E-09 55.5 3.9 38 47-95 171-223 (386)
55 PRK14276 chaperone protein Dna 97.2 0.00021 4.5E-09 56.9 2.3 38 47-95 163-215 (380)
56 PLN03165 chaperone protein dna 97.2 0.00037 8.1E-09 47.0 3.1 35 47-95 52-98 (111)
57 PRK10767 chaperone protein Dna 97.2 0.00029 6.3E-09 55.8 2.7 38 47-95 159-207 (371)
58 PRK14277 chaperone protein Dna 97.1 0.00027 5.8E-09 56.4 2.5 38 47-95 172-224 (386)
59 PRK14290 chaperone protein Dna 97.1 0.00036 7.9E-09 55.2 3.1 38 47-95 165-217 (365)
60 PRK14291 chaperone protein Dna 97.1 0.00039 8.4E-09 55.4 3.2 37 47-95 173-220 (382)
61 PRK14281 chaperone protein Dna 97.1 0.00036 7.7E-09 55.9 2.8 38 47-95 179-231 (397)
62 TIGR02349 DnaJ_bact chaperone 97.1 0.00033 7.1E-09 55.1 2.5 39 47-96 160-213 (354)
63 TIGR02642 phage_xxxx uncharact 97.1 0.00031 6.6E-09 51.3 2.0 28 59-95 100-127 (186)
64 PRK14297 chaperone protein Dna 97.1 0.00041 8.9E-09 55.2 2.8 38 47-95 165-217 (380)
65 PRK14293 chaperone protein Dna 96.9 0.00059 1.3E-08 54.2 2.6 38 47-95 160-212 (374)
66 PTZ00037 DnaJ_C chaperone prot 96.9 0.00076 1.6E-08 54.6 3.1 41 47-96 166-221 (421)
67 PRK14287 chaperone protein Dna 96.9 0.00055 1.2E-08 54.4 2.2 38 47-95 155-207 (371)
68 PRK14283 chaperone protein Dna 96.8 0.00077 1.7E-08 53.6 2.5 38 47-95 163-215 (378)
69 KOG2824 Glutaredoxin-related p 96.8 0.0021 4.5E-08 49.5 4.6 51 48-101 230-280 (281)
70 PRK14292 chaperone protein Dna 96.7 0.0012 2.6E-08 52.3 2.7 38 47-95 157-209 (371)
71 TIGR02642 phage_xxxx uncharact 96.7 0.0013 2.8E-08 48.1 2.6 25 47-71 99-128 (186)
72 cd03031 GRX_GRX_like Glutaredo 96.1 0.0083 1.8E-07 42.2 3.6 48 47-97 99-147 (147)
73 PRK10266 curved DNA-binding pr 94.9 0.032 6.9E-07 43.2 3.6 36 11-46 93-135 (306)
74 PRK14299 chaperone protein Dna 94.8 0.03 6.5E-07 43.1 3.2 36 11-46 97-147 (291)
75 KOG0712 Molecular chaperone (D 92.1 0.083 1.8E-06 41.9 1.6 40 47-95 143-198 (337)
76 cd03031 GRX_GRX_like Glutaredo 90.4 0.39 8.4E-06 33.7 3.5 35 59-107 100-146 (147)
77 TIGR00630 uvra excinuclease AB 88.3 0.33 7.1E-06 43.2 2.2 32 59-94 737-770 (924)
78 KOG2824 Glutaredoxin-related p 86.6 0.83 1.8E-05 35.4 3.3 35 59-107 230-275 (281)
79 PRK00349 uvrA excinuclease ABC 83.6 0.74 1.6E-05 41.1 2.0 31 60-94 740-772 (943)
80 TIGR00630 uvra excinuclease AB 80.6 1.2 2.5E-05 39.7 2.2 23 84-106 737-771 (924)
81 PRK00635 excinuclease ABC subu 80.3 1.2 2.5E-05 42.4 2.1 31 60-94 1609-1641(1809)
82 PF07092 DUF1356: Protein of u 78.9 1.1 2.5E-05 33.9 1.4 23 48-70 28-50 (238)
83 KOG0715 Molecular chaperone (D 78.9 0.75 1.6E-05 35.6 0.4 38 47-95 181-229 (288)
84 COG0178 UvrA Excinuclease ATPa 74.3 3.2 7E-05 36.9 3.0 33 59-93 731-763 (935)
85 PRK00349 uvrA excinuclease ABC 73.0 2.2 4.8E-05 38.1 1.8 22 85-106 740-773 (943)
86 PF03589 Antiterm: Antitermina 72.9 0.9 2E-05 29.7 -0.5 37 59-95 6-44 (95)
87 PF14353 CpXC: CpXC protein 72.0 6.3 0.00014 26.3 3.5 36 59-94 2-49 (128)
88 PRK00635 excinuclease ABC subu 70.3 2.7 5.9E-05 40.1 1.8 10 86-95 1610-1619(1809)
89 COG5216 Uncharacterized conser 66.7 3.9 8.5E-05 24.8 1.4 21 34-54 30-51 (67)
90 PRK00488 pheS phenylalanyl-tRN 65.1 8.5 0.00018 30.7 3.4 30 47-82 260-289 (339)
91 PRK04023 DNA polymerase II lar 65.0 6.8 0.00015 35.6 3.1 53 38-102 609-671 (1121)
92 PF07092 DUF1356: Protein of u 64.4 3.3 7.1E-05 31.5 0.9 24 83-106 27-50 (238)
93 COG0178 UvrA Excinuclease ATPa 63.7 4.7 0.0001 35.9 1.9 23 84-106 731-765 (935)
94 TIGR03655 anti_R_Lar restricti 59.8 15 0.00032 21.0 3.0 33 59-94 2-37 (53)
95 PRK14714 DNA polymerase II lar 59.2 17 0.00038 33.8 4.6 44 47-102 667-717 (1337)
96 PF13719 zinc_ribbon_5: zinc-r 57.4 5.9 0.00013 21.2 0.9 10 60-69 4-13 (37)
97 PF08273 Prim_Zn_Ribbon: Zinc- 54.9 8.4 0.00018 21.3 1.3 10 60-69 5-14 (40)
98 PF01556 CTDII: DnaJ C termina 54.3 7.1 0.00015 24.1 1.1 17 30-46 1-17 (81)
99 PF07191 zinc-ribbons_6: zinc- 49.9 23 0.00049 22.0 2.8 20 83-102 30-58 (70)
100 PF13453 zf-TFIIB: Transcripti 49.2 27 0.0006 18.7 2.8 11 81-91 17-27 (41)
101 PF10080 DUF2318: Predicted me 49.0 36 0.00077 22.5 3.8 19 83-101 35-59 (102)
102 PRK14299 chaperone protein Dna 48.4 10 0.00022 29.1 1.3 21 26-46 198-218 (291)
103 PF09538 FYDLN_acid: Protein o 47.4 13 0.00027 24.9 1.5 23 44-66 6-34 (108)
104 smart00440 ZnF_C2C2 C2C2 Zinc 45.9 49 0.0011 17.9 3.5 31 60-90 2-35 (40)
105 PF07754 DUF1610: Domain of un 45.5 20 0.00043 17.7 1.7 7 83-89 16-22 (24)
106 KOG2923 Uncharacterized conser 44.2 15 0.00033 22.5 1.4 20 35-54 31-51 (67)
107 TIGR02098 MJ0042_CXXC MJ0042 f 43.5 38 0.00082 17.6 2.8 10 60-69 4-13 (38)
108 PRK05978 hypothetical protein; 42.7 13 0.00029 26.2 1.1 8 83-90 52-59 (148)
109 PF13717 zinc_ribbon_4: zinc-r 42.0 14 0.0003 19.6 0.9 10 60-69 4-13 (36)
110 TIGR00310 ZPR1_znf ZPR1 zinc f 40.1 48 0.0011 24.2 3.7 33 60-92 2-39 (192)
111 COG1198 PriA Primosomal protei 39.4 40 0.00088 29.6 3.7 48 47-103 435-484 (730)
112 PRK10266 curved DNA-binding pr 39.1 19 0.00042 27.8 1.6 21 26-46 206-226 (306)
113 smart00709 Zpr1 Duplicated dom 37.5 58 0.0013 23.1 3.7 33 60-92 2-38 (160)
114 PF13901 DUF4206: Domain of un 37.3 13 0.00029 27.1 0.4 39 47-91 142-180 (202)
115 TIGR00595 priA primosomal prot 37.2 50 0.0011 27.4 3.8 49 47-104 213-263 (505)
116 PF01096 TFIIS_C: Transcriptio 37.1 54 0.0012 17.6 2.8 31 60-90 2-35 (39)
117 PF12387 Peptidase_C74: Pestiv 37.0 17 0.00038 26.6 0.9 23 47-69 162-186 (200)
118 PF00098 zf-CCHC: Zinc knuckle 35.8 20 0.00042 16.2 0.7 8 61-68 3-10 (18)
119 PRK14559 putative protein seri 35.3 31 0.00068 29.8 2.4 42 48-102 2-49 (645)
120 PF08792 A2L_zn_ribbon: A2L zi 34.7 43 0.00094 17.5 2.1 12 59-70 4-15 (33)
121 PRK03564 formate dehydrogenase 34.6 44 0.00096 26.3 2.9 10 59-68 227-236 (309)
122 PF15616 TerY-C: TerY-C metal 34.6 77 0.0017 21.9 3.8 14 48-61 78-92 (131)
123 PF03367 zf-ZPR1: ZPR1 zinc-fi 33.9 62 0.0013 22.9 3.4 33 60-92 3-39 (161)
124 TIGR00595 priA primosomal prot 33.7 29 0.00062 28.8 1.9 21 47-67 222-249 (505)
125 PF08271 TF_Zn_Ribbon: TFIIB z 30.0 43 0.00093 18.1 1.6 9 60-68 2-10 (43)
126 TIGR00757 RNaseEG ribonuclease 29.9 24 0.00053 28.7 0.8 13 83-95 390-402 (414)
127 PRK02935 hypothetical protein; 29.5 30 0.00065 23.3 1.1 19 83-101 70-93 (110)
128 PRK12380 hydrogenase nickel in 29.1 34 0.00074 22.7 1.3 23 47-69 70-97 (113)
129 PF14599 zinc_ribbon_6: Zinc-r 28.3 22 0.00048 21.4 0.2 28 39-66 20-56 (61)
130 TIGR02300 FYDLN_acid conserved 27.8 41 0.00088 23.3 1.5 24 44-67 6-35 (129)
131 PRK00420 hypothetical protein; 27.8 47 0.001 22.4 1.8 7 83-89 40-46 (112)
132 PRK14892 putative transcriptio 27.2 63 0.0014 21.2 2.3 7 59-65 22-28 (99)
133 PF01155 HypA: Hydrogenase exp 27.0 46 0.001 21.9 1.7 24 47-70 70-98 (113)
134 PF03833 PolC_DP2: DNA polymer 26.6 22 0.00047 31.9 0.0 44 47-102 655-700 (900)
135 PF05180 zf-DNL: DNL zinc fing 26.4 69 0.0015 19.6 2.2 10 60-69 6-15 (66)
136 COG1998 RPS31 Ribosomal protei 26.3 32 0.00069 20.1 0.7 7 83-89 19-25 (51)
137 smart00778 Prim_Zn_Ribbon Zinc 25.8 99 0.0021 16.6 2.6 10 60-69 5-14 (37)
138 COG1198 PriA Primosomal protei 25.7 41 0.00089 29.6 1.5 34 47-92 444-484 (730)
139 PRK14873 primosome assembly pr 24.9 89 0.0019 27.1 3.4 49 47-104 383-432 (665)
140 PF04438 zf-HIT: HIT zinc fing 24.5 54 0.0012 16.7 1.3 17 85-101 4-20 (30)
141 PF07295 DUF1451: Protein of u 24.5 51 0.0011 23.1 1.6 11 55-65 109-119 (146)
142 PF12760 Zn_Tnp_IS1595: Transp 24.4 61 0.0013 17.8 1.6 9 59-67 19-27 (46)
143 PRK14714 DNA polymerase II lar 24.2 51 0.0011 30.9 1.9 18 85-102 681-700 (1337)
144 PRK04023 DNA polymerase II lar 23.9 54 0.0012 30.2 1.9 18 83-100 638-657 (1121)
145 PRK09710 lar restriction allev 23.7 1.7E+02 0.0037 17.8 3.6 31 59-93 7-37 (64)
146 PRK05580 primosome assembly pr 23.6 49 0.0011 28.5 1.6 48 47-103 381-430 (679)
147 PRK05580 primosome assembly pr 23.5 1.1E+02 0.0024 26.3 3.7 34 47-92 390-430 (679)
148 PF11023 DUF2614: Protein of u 23.2 44 0.00094 22.7 1.0 19 83-101 69-92 (114)
149 TIGR00100 hypA hydrogenase nic 23.0 55 0.0012 21.7 1.4 23 47-69 70-97 (115)
150 cd01129 PulE-GspE PulE/GspE Th 22.7 38 0.00082 25.6 0.7 8 47-54 217-224 (264)
151 COG5082 AIR1 Arginine methyltr 22.5 73 0.0016 23.5 2.1 44 47-96 60-110 (190)
152 PHA02998 RNA polymerase subuni 22.5 1.7E+02 0.0037 21.6 4.0 32 59-90 144-178 (195)
153 PF14205 Cys_rich_KTR: Cystein 22.0 86 0.0019 18.6 1.9 12 59-70 5-16 (55)
154 PF09855 DUF2082: Nucleic-acid 21.9 1.9E+02 0.0042 17.4 3.6 8 83-90 36-43 (64)
155 PF14354 Lar_restr_allev: Rest 21.5 1.4E+02 0.0031 16.9 2.9 11 59-70 4-14 (61)
156 PRK00415 rps27e 30S ribosomal 21.5 1.1E+02 0.0025 18.3 2.4 10 81-90 9-18 (59)
157 PF13696 zf-CCHC_2: Zinc knuck 21.0 48 0.001 17.5 0.7 15 85-99 10-26 (32)
158 PF14803 Nudix_N_2: Nudix N-te 20.9 67 0.0015 16.9 1.2 27 60-90 2-29 (34)
159 KOG4592 Uncharacterized conser 20.9 42 0.0009 29.2 0.6 26 17-46 1-26 (728)
160 PRK11712 ribonuclease G; Provi 20.2 46 0.001 27.8 0.8 12 59-70 403-414 (489)
161 TIGR03835 termin_org_DnaJ term 20.0 55 0.0012 29.3 1.2 19 28-46 656-674 (871)
162 TIGR03835 termin_org_DnaJ term 20.0 58 0.0013 29.2 1.3 22 25-46 742-763 (871)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2e-21 Score=153.06 Aligned_cols=95 Identities=28% Similarity=0.672 Sum_probs=81.7
Q ss_pred cccchhHhhhCC--------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCc
Q 037534 11 RRRSSLESLFCY--------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSG 68 (108)
Q Consensus 11 ~~~~~f~~~f~~--------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G 68 (108)
+..++|++||+. ..+++|+|+.+.|+|+|+|+|+|. ...|+.|+|+|+ .+|++|+|+|
T Consensus 90 ~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G 169 (371)
T COG0484 90 DFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSG 169 (371)
T ss_pred CHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcC
Confidence 688999999941 235689999999999999999998 789999999987 7999999999
Q ss_pred eEeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 69 LYVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 69 ~~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
.+. +.+..|+++ +++|+.|+|+|+++ |+.|+|.|++.
T Consensus 170 ~v~--~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~ 210 (371)
T COG0484 170 QVR--TVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVK 210 (371)
T ss_pred eEE--EEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeEe
Confidence 962 222227766 99999999999999 99999999974
No 2
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=1.2e-18 Score=137.26 Aligned_cols=94 Identities=35% Similarity=0.673 Sum_probs=77.7
Q ss_pred chhHhhhCC--------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEe
Q 037534 14 SSLESLFCY--------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYV 71 (108)
Q Consensus 14 ~~f~~~f~~--------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~ 71 (108)
++|++||+. ..+++++|+.++|.|+|+|+|+|+ .+.|+.|+|+|. ..|+.|+|+|.++
T Consensus 103 d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 182 (369)
T PRK14282 103 DIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIR 182 (369)
T ss_pred hhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEE
Confidence 678888862 124578999999999999999998 689999999997 6899999999974
Q ss_pred eeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 72 DSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 72 ~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
...+...|+++ +.+|+.|.|+|+++ |..|+|+|++.
T Consensus 183 ~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 222 (369)
T PRK14282 183 EERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIR 222 (369)
T ss_pred EEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEE
Confidence 22222337776 88999999999988 99999999864
No 3
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=8.6e-19 Score=138.59 Aligned_cols=96 Identities=26% Similarity=0.575 Sum_probs=78.6
Q ss_pred ccchhHhhhCC------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEe
Q 037534 12 RRSSLESLFCY------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYV 71 (108)
Q Consensus 12 ~~~~f~~~f~~------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~ 71 (108)
+.++|++||+. ..++++.|+.++|.|+|+|+|+|+ .+.|+.|+|+|. ..|+.|+|+|+++
T Consensus 92 ~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 171 (377)
T PRK14298 92 FGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVT 171 (377)
T ss_pred chhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEE
Confidence 34678999973 234689999999999999999998 689999999997 6899999999974
Q ss_pred eeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 72 DSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 72 ~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
...+.+.|+++ +.+|+.|.|+|+++ |+.|+|+|++.
T Consensus 172 ~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 211 (377)
T PRK14298 172 TTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVR 211 (377)
T ss_pred EEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEE
Confidence 21121225555 89999999999988 99999999874
No 4
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=1.3e-18 Score=137.40 Aligned_cols=92 Identities=27% Similarity=0.666 Sum_probs=78.6
Q ss_pred ccchhHhhhCCC-----------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcC
Q 037534 12 RRSSLESLFCYD-----------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSG 66 (108)
Q Consensus 12 ~~~~f~~~f~~~-----------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G 66 (108)
+.++|++||+.. ++.++.|+.++|.|+|+|+|+|+ .+.|+.|+|+|. ..|+.|+|
T Consensus 96 ~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G 175 (372)
T PRK14286 96 FGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGG 175 (372)
T ss_pred hhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcC
Confidence 447788898621 23578999999999999999998 689999999997 68999999
Q ss_pred CceEeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 67 SGLYVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 67 ~G~~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
+|++ ...+|+++ +++|+.|.|+|+++ |+.|+|+|++.
T Consensus 176 ~G~v----~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~ 216 (372)
T PRK14286 176 SGQI----RRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQE 216 (372)
T ss_pred eEEE----EEEeceEEEEEeCCCCCceeeEecccCCCCCCCcEEe
Confidence 9996 33458776 88999999999998 99999999874
No 5
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=1.7e-18 Score=136.87 Aligned_cols=96 Identities=27% Similarity=0.641 Sum_probs=78.5
Q ss_pred ccchhHhhhCC-------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceE
Q 037534 12 RRSSLESLFCY-------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLY 70 (108)
Q Consensus 12 ~~~~f~~~f~~-------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~ 70 (108)
+.++|++||+. ..++++.|+.++|.|+|+|+|+|+ .+.|+.|+|+|. ..|+.|+|+|.+
T Consensus 96 ~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 175 (380)
T PRK14276 96 FEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVI 175 (380)
T ss_pred hhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEE
Confidence 45678999962 124578999999999999999998 689999999996 689999999997
Q ss_pred eeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 71 VDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 71 ~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
....+...|+++ +.+|+.|.|+|+++ |+.|+|+|++.
T Consensus 176 ~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~ 216 (380)
T PRK14276 176 TVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEK 216 (380)
T ss_pred EEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEE
Confidence 311112237766 88999999999988 99999999864
No 6
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=2.6e-18 Score=135.75 Aligned_cols=96 Identities=26% Similarity=0.603 Sum_probs=78.0
Q ss_pred ccchhHhhhCC-------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceE
Q 037534 12 RRSSLESLFCY-------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLY 70 (108)
Q Consensus 12 ~~~~f~~~f~~-------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~ 70 (108)
+.++|++||+. ..++++.|+.++|.|+|+|+|+|+ .+.|+.|+|+|. ..|+.|+|+|++
T Consensus 93 ~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 172 (376)
T PRK14280 93 FEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQV 172 (376)
T ss_pred chhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEE
Confidence 44678999962 123578999999999999999998 689999999996 689999999997
Q ss_pred eeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 71 VDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 71 ~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
+...+...|+++ +.+|+.|.|+|+++ |+.|+|+|++.
T Consensus 173 ~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 213 (376)
T PRK14280 173 SVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVR 213 (376)
T ss_pred EEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEE
Confidence 311112236666 88999999999988 99999999874
No 7
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.76 E-value=3.3e-18 Score=133.84 Aligned_cols=96 Identities=26% Similarity=0.597 Sum_probs=78.5
Q ss_pred ccchhHhhhCC---------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCc
Q 037534 12 RRSSLESLFCY---------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSG 68 (108)
Q Consensus 12 ~~~~f~~~f~~---------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G 68 (108)
..++|++||+. ..+++++|+.++|.|+|+|+|+|. .+.|+.|+|+|. ..|+.|+|+|
T Consensus 91 ~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 170 (354)
T TIGR02349 91 FGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTG 170 (354)
T ss_pred hhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCee
Confidence 45678888872 124578999999999999999998 689999999996 6899999999
Q ss_pred eEeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 69 LYVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 69 ~~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
.++.......|+++ +.+|+.|.|+|+++ |+.|+|+|++.
T Consensus 171 ~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 213 (354)
T TIGR02349 171 QVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVK 213 (354)
T ss_pred EEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEec
Confidence 97421122236766 88999999999988 99999999874
No 8
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=2.9e-18 Score=135.58 Aligned_cols=96 Identities=28% Similarity=0.566 Sum_probs=78.0
Q ss_pred ccchhHhhhCCC--------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCce
Q 037534 12 RRSSLESLFCYD--------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGL 69 (108)
Q Consensus 12 ~~~~f~~~f~~~--------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~ 69 (108)
..++|++||+.. .++++.|+.++|.|+|+|+|+|+ .+.|+.|+|+|. ..|+.|+|+|+
T Consensus 88 ~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 167 (378)
T PRK14278 88 LGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGE 167 (378)
T ss_pred hhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceE
Confidence 346799999731 23478999999999999999998 689999999997 68999999999
Q ss_pred EeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 70 YVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 70 ~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
++...+...|+++ +.+|+.|+|+|+++ |+.|+|+|++.
T Consensus 168 ~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 209 (378)
T PRK14278 168 VQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVR 209 (378)
T ss_pred EEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEe
Confidence 7311111236665 88999999999998 99999999874
No 9
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=2.2e-18 Score=135.72 Aligned_cols=92 Identities=28% Similarity=0.610 Sum_probs=78.8
Q ss_pred ccchhHhhhCCC-------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceE
Q 037534 12 RRSSLESLFCYD-------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLY 70 (108)
Q Consensus 12 ~~~~f~~~f~~~-------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~ 70 (108)
+.++|++||+.. .+.++.|+.++|.|+|+|+|+|. .+.|+.|+|+|. ..|+.|+|+|++
T Consensus 96 ~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 175 (365)
T PRK14285 96 FGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRV 175 (365)
T ss_pred HHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeE
Confidence 446788898731 24579999999999999999998 689999999996 689999999996
Q ss_pred eeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 71 VDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 71 ~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
....|+++ +.+|+.|.|+|+++ |..|+|+|++.
T Consensus 176 ----~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 212 (365)
T PRK14285 176 ----MQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLK 212 (365)
T ss_pred ----EecCceeEEeeecCCCCCcccccCCCCCCCCCCCEEe
Confidence 34558877 89999999999998 99999999874
No 10
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=4.7e-18 Score=134.19 Aligned_cols=93 Identities=23% Similarity=0.612 Sum_probs=76.7
Q ss_pred cchhHhhhCC-----CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeee
Q 037534 13 RSSLESLFCY-----DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDS 73 (108)
Q Consensus 13 ~~~f~~~f~~-----~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~ 73 (108)
.++|++||+. .++.++.|+.++|.|+|+|+|+|+ .+.|+.|+|+|. .+|+.|+|+|.++
T Consensus 102 ~d~f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~-- 179 (372)
T PRK14296 102 TNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVL-- 179 (372)
T ss_pred hhhhhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEE--
Confidence 4668888863 124579999999999999999998 689999999997 6799999999974
Q ss_pred EEeecCcE--E-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 74 ILESQGVI--V-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 74 ~~~~~G~~--~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
..+..|++ + +.+|+.|.|+|+++ |+.|+|+|++.
T Consensus 180 ~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 219 (372)
T PRK14296 180 VQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYL 219 (372)
T ss_pred EEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEE
Confidence 23334653 3 78999999999998 99999999863
No 11
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=4.9e-18 Score=134.88 Aligned_cols=90 Identities=32% Similarity=0.725 Sum_probs=75.3
Q ss_pred chhHhhhCCC-------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEee
Q 037534 14 SSLESLFCYD-------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVD 72 (108)
Q Consensus 14 ~~f~~~f~~~-------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~ 72 (108)
++|.+||+.. .++++.|+.++|.|+|+|+|+|+ .+.|+.|+|+|. .+|+.|+|+|++
T Consensus 125 d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~-- 202 (392)
T PRK14279 125 DLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVI-- 202 (392)
T ss_pred hhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEE--
Confidence 4456666521 24578999999999999999998 689999999997 689999999996
Q ss_pred eEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 73 SILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 73 ~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
...+|+++ +++|+.|.|+|+++ |..|+|+|++.
T Consensus 203 --~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~ 239 (392)
T PRK14279 203 --SRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTT 239 (392)
T ss_pred --EEEecceEEEEecCCCCceeEEeCCcCCCCCCCeEEE
Confidence 33447666 89999999999998 99999999874
No 12
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=6.8e-18 Score=133.45 Aligned_cols=96 Identities=29% Similarity=0.645 Sum_probs=77.6
Q ss_pred ccchhHhhhCC---------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCc
Q 037534 12 RRSSLESLFCY---------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSG 68 (108)
Q Consensus 12 ~~~~f~~~f~~---------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G 68 (108)
+.++|++||+. ..+.+++|++++|.|+|+|+|+|+ .+.|+.|+|+|. ..|+.|+|+|
T Consensus 96 ~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 175 (380)
T PRK14297 96 FGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTG 175 (380)
T ss_pred hhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeE
Confidence 44778999862 123578999999999999999998 689999999996 6899999999
Q ss_pred eEeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 69 LYVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 69 ~~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
++....+...|+++ +.+|+.|.|+|+++ |..|+|+|++.
T Consensus 176 ~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 218 (380)
T PRK14297 176 QIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVR 218 (380)
T ss_pred EEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEE
Confidence 87311111236665 89999999999988 99999999763
No 13
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=8e-18 Score=133.34 Aligned_cols=94 Identities=30% Similarity=0.630 Sum_probs=76.3
Q ss_pred chhHhhhCC--C--------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCce
Q 037534 14 SSLESLFCY--D--------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGL 69 (108)
Q Consensus 14 ~~f~~~f~~--~--------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~ 69 (108)
++|++||+. . .+.++.|+.++|.|+|+|+|+|+ .+.|+.|+|+|. ..|+.|+|+|+
T Consensus 104 d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 183 (386)
T PRK14277 104 DIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQ 183 (386)
T ss_pred HHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEE
Confidence 467777751 1 23578999999999999999998 689999999996 68999999998
Q ss_pred EeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 70 YVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 70 ~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
++...+...|+++ +.+|+.|.|+|+++ |+.|+|+|++.
T Consensus 184 ~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 225 (386)
T PRK14277 184 VRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIR 225 (386)
T ss_pred EEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEe
Confidence 7421222237766 78999999999998 99999999874
No 14
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=7.7e-18 Score=132.65 Aligned_cols=90 Identities=27% Similarity=0.609 Sum_probs=75.6
Q ss_pred chhHhhhCC------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeee
Q 037534 14 SSLESLFCY------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDS 73 (108)
Q Consensus 14 ~~f~~~f~~------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~ 73 (108)
++|.+||+. .+++++.|+.++|.|+|+|+|+|. .+.|+.|+|+|. ..|+.|+|+|++
T Consensus 95 ~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~--- 171 (371)
T PRK10767 95 DIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQV--- 171 (371)
T ss_pred hhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEE---
Confidence 456666652 224679999999999999999998 689999999996 589999999986
Q ss_pred EEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 74 ILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 74 ~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
...+|+++ +.+|+.|.|+|+++ |+.|+|+|++.
T Consensus 172 -~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 208 (371)
T PRK10767 172 -RMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVE 208 (371)
T ss_pred -EEeeceEEEEEeCCCCCCceeECCCCCCCCCCCceEe
Confidence 33348776 88999999999987 99999999874
No 15
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=9.4e-18 Score=132.08 Aligned_cols=91 Identities=26% Similarity=0.664 Sum_probs=77.2
Q ss_pred cchhHhhhCCC---------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCce
Q 037534 13 RSSLESLFCYD---------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGL 69 (108)
Q Consensus 13 ~~~f~~~f~~~---------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~ 69 (108)
.++|++||++. .+.+++|+.++|.|+|+|+|+|. .+.|+.|+|+|. ..|+.|+|+|.
T Consensus 93 ~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 172 (366)
T PRK14294 93 GDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQ 172 (366)
T ss_pred hhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEE
Confidence 46788888721 23578999999999999999998 689999999997 58999999999
Q ss_pred EeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 70 YVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 70 ~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
+ ....|+++ +++|+.|.|+|+++ |+.|+|+|++.
T Consensus 173 ~----~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 210 (366)
T PRK14294 173 V----TQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVR 210 (366)
T ss_pred E----EEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceEee
Confidence 6 33447776 99999999999998 99999999874
No 16
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=8.3e-18 Score=133.42 Aligned_cols=91 Identities=30% Similarity=0.630 Sum_probs=77.0
Q ss_pred cchhHhhhCC-----------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCC
Q 037534 13 RSSLESLFCY-----------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGS 67 (108)
Q Consensus 13 ~~~f~~~f~~-----------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~ 67 (108)
.++|++||+. .++.++.|+.++|.|+|+|+|+|+ .+.|+.|+|+|. ..|+.|+|+
T Consensus 105 ~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~ 184 (391)
T PRK14284 105 GSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGS 184 (391)
T ss_pred ccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCe
Confidence 3668888862 123578999999999999999998 689999999997 679999999
Q ss_pred ceEeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 68 GLYVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 68 G~~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
|.+ ...+|+++ +.+|+.|.|+|+++ |+.|+|+|++.
T Consensus 185 G~v----~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 224 (391)
T PRK14284 185 GQV----VQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIK 224 (391)
T ss_pred eEE----EEEeceEEEEEECCCCCCCCcccCCcCCCCCCcceec
Confidence 996 33348776 88999999999988 99999999874
No 17
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=9.5e-18 Score=133.11 Aligned_cols=90 Identities=30% Similarity=0.683 Sum_probs=74.3
Q ss_pred chhHhhhCC----CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeeeEE
Q 037534 14 SSLESLFCY----DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDSIL 75 (108)
Q Consensus 14 ~~f~~~f~~----~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~~~ 75 (108)
++|.+||+. ..++++.|+.++|.|+|+|+|+|. .+.|+.|+|+|. ..|+.|+|+|+++
T Consensus 121 d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~---- 196 (389)
T PRK14295 121 DVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVS---- 196 (389)
T ss_pred hhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEE----
Confidence 345556642 234579999999999999999998 689999999996 6899999999972
Q ss_pred eecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 76 ESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 76 ~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
..+|+++ +.+|+.|.|+|+++ |..|.|+|++.
T Consensus 197 ~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~ 232 (389)
T PRK14295 197 RNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAK 232 (389)
T ss_pred EEecceEEEEecCCCcceeEEeccCCCCCCCCceEe
Confidence 3336655 88999999999998 99999999874
No 18
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=1e-17 Score=132.26 Aligned_cols=90 Identities=32% Similarity=0.741 Sum_probs=76.0
Q ss_pred chhHhhhCCC--------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEe
Q 037534 14 SSLESLFCYD--------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYV 71 (108)
Q Consensus 14 ~~f~~~f~~~--------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~ 71 (108)
++|.+||++. ++.++.|+.++|.|+|+|+|+|. .+.|+.|+|+|. ..|+.|+|+|.+
T Consensus 95 d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v- 173 (373)
T PRK14301 95 DIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQV- 173 (373)
T ss_pred HHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEE-
Confidence 4566667521 23578999999999999999998 689999999996 679999999996
Q ss_pred eeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 72 DSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 72 ~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
...+|+++ +.+|+.|.|+|+++ |+.|+|+|++.
T Consensus 174 ---~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 210 (373)
T PRK14301 174 ---RQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQ 210 (373)
T ss_pred ---EEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCceec
Confidence 33457776 99999999999998 99999999874
No 19
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=1.3e-17 Score=131.60 Aligned_cols=96 Identities=28% Similarity=0.637 Sum_probs=77.8
Q ss_pred ccchhHhhhCC-------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceE
Q 037534 12 RRSSLESLFCY-------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLY 70 (108)
Q Consensus 12 ~~~~f~~~f~~-------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~ 70 (108)
+.++|++||+. .++.++.|+.++|.|+|+|+|+|+ .+.|+.|+|+|. ..|+.|+|+|++
T Consensus 88 ~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 167 (371)
T PRK14287 88 FSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQL 167 (371)
T ss_pred hHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEE
Confidence 34678889872 124578999999999999999998 689999999996 679999999987
Q ss_pred eeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 71 VDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 71 ~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
....+...|+++ +.+|+.|.|+|+++ |..|.|+|++.
T Consensus 168 ~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 208 (371)
T PRK14287 168 NVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVR 208 (371)
T ss_pred EEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEe
Confidence 311122236765 88999999999988 99999999863
No 20
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=1.4e-17 Score=131.26 Aligned_cols=90 Identities=29% Similarity=0.609 Sum_probs=74.6
Q ss_pred chhHhhhCCC-------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc-----ccCCCCcCCceEeee
Q 037534 14 SSLESLFCYD-------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV-----VLCATCSGSGLYVDS 73 (108)
Q Consensus 14 ~~f~~~f~~~-------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~-----~~C~~C~G~G~~~~~ 73 (108)
++|.+||+.. ++++++|+.++|.|+|+|+|+|+ .+.|+.|+|+|. ..|+.|+|+|++
T Consensus 92 ~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~--- 168 (369)
T PRK14288 92 SFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQV--- 168 (369)
T ss_pred HHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEE---
Confidence 3456666521 23578999999999999999998 569999999997 689999999986
Q ss_pred EEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 74 ILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 74 ~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
...+|+++ +.+|+.|.|+|+++ |+.|+|.|++.
T Consensus 169 -~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 205 (369)
T PRK14288 169 -FMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYIL 205 (369)
T ss_pred -EEEeceEEEEEecCCCCCCceEccccCccCCCcceEE
Confidence 33447766 78999999999988 99999999864
No 21
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.71 E-value=3.2e-17 Score=131.39 Aligned_cols=95 Identities=26% Similarity=0.589 Sum_probs=77.6
Q ss_pred cccchhHhhhCC----CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc-----ccCCCCcCCceEeee
Q 037534 11 RRRSSLESLFCY----DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV-----VLCATCSGSGLYVDS 73 (108)
Q Consensus 11 ~~~~~f~~~f~~----~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~-----~~C~~C~G~G~~~~~ 73 (108)
++.++|+.||+. .++++|+|+.++|.|+|+|+|+|. .+.|+.|+|+|. ..|+.|+|+|+++
T Consensus 102 d~~d~f~~~Fggg~~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~-- 179 (421)
T PTZ00037 102 DASDLFDLIFGGGRKPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRV-- 179 (421)
T ss_pred chhhhHHHhhccccccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEE--
Confidence 345778888873 234679999999999999999998 689999999997 6899999999863
Q ss_pred EEeecCcE--E-EeeCCCCCCcceEE-----CCCCCCceEeC
Q 037534 74 ILESQGVI--V-KVPCLGCGGTGNIM-----CAECGGRGHCS 107 (108)
Q Consensus 74 ~~~~~G~~--~-~~~C~~C~G~G~~~-----C~~C~G~G~~~ 107 (108)
.....|++ + +.+|+.|.|+|+++ |+.|+|+|++.
T Consensus 180 ~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~ 221 (421)
T PTZ00037 180 QIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKK 221 (421)
T ss_pred EEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceee
Confidence 22223542 3 88999999999986 99999999874
No 22
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=3.3e-17 Score=130.32 Aligned_cols=82 Identities=32% Similarity=0.656 Sum_probs=69.3
Q ss_pred CCCCceEEEEEecchhhccCc--------ccccCCccCcCc-----ccCCCCcCCceEeeeEEeecCcEE-EeeCCCCCC
Q 037534 26 IPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV-----VLCATCSGSGLYVDSILESQGVIV-KVPCLGCGG 91 (108)
Q Consensus 26 ~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~-----~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C~G 91 (108)
.++.|+.+.|.|+|+|+|+|+ .+.|+.|+|+|. ..|+.|+|+|.+....+...|+++ +.+|+.|.|
T Consensus 134 ~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G 213 (397)
T PRK14281 134 IPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGG 213 (397)
T ss_pred CCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcc
Confidence 368899999999999999998 689999999997 679999999997321222236665 889999999
Q ss_pred cceEE---CCCCCCceEeC
Q 037534 92 TGNIM---CAECGGRGHCS 107 (108)
Q Consensus 92 ~G~~~---C~~C~G~G~~~ 107 (108)
+|+++ |+.|+|+|++.
T Consensus 214 ~G~~~~~~C~~C~G~g~v~ 232 (397)
T PRK14281 214 EGRVVKDRCPACYGEGIKQ 232 (397)
T ss_pred eeeeeCCCCCCCCCCccEe
Confidence 99998 99999999874
No 23
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=5.1e-17 Score=128.22 Aligned_cols=78 Identities=28% Similarity=0.691 Sum_probs=69.7
Q ss_pred CCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeeeEEeecCcEE-EeeCCCCC
Q 037534 26 IPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDSILESQGVIV-KVPCLGCG 90 (108)
Q Consensus 26 ~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C~ 90 (108)
.++.|+.++|.|+|+|+|+|. .+.|+.|+|+|. ..|+.|+|+|.+ ...+|+++ +.+|+.|.
T Consensus 116 ~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~----~~~~g~~~~~~~C~~C~ 191 (372)
T PRK14300 116 VRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGAT----RMQQGFFTIEQACHKCQ 191 (372)
T ss_pred CCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEE----EEeeceEEEEEeCCCCC
Confidence 478999999999999999998 689999999996 789999999996 33458776 88999999
Q ss_pred CcceEE---CCCCCCceEeC
Q 037534 91 GTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 91 G~G~~~---C~~C~G~G~~~ 107 (108)
|+|+++ |+.|+|+|++.
T Consensus 192 G~G~~~~~~C~~C~G~g~v~ 211 (372)
T PRK14300 192 GNGQIIKNPCKKCHGMGRYH 211 (372)
T ss_pred ccceEeCCCCCCCCCceEEE
Confidence 999998 99999999974
No 24
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1e-16 Score=126.20 Aligned_cols=95 Identities=28% Similarity=0.641 Sum_probs=76.6
Q ss_pred cccchhHhhhCCC------------C--CCCCCceEEEEEecchhhccCc--------ccccCCccCcCc-----ccCCC
Q 037534 11 RRRSSLESLFCYD------------K--PIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV-----VLCAT 63 (108)
Q Consensus 11 ~~~~~f~~~f~~~------------~--~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~-----~~C~~ 63 (108)
++.++|++||+.. . +.++.|+.++|.|+|+|+|+|+ .+.|+.|+|+|. ..|+.
T Consensus 91 ~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~ 170 (365)
T PRK14290 91 DINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPT 170 (365)
T ss_pred chhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCC
Confidence 3457788888621 1 1237899999999999999998 689999999997 68999
Q ss_pred CcCCceEeeeEEeecCcEE---EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 64 CSGSGLYVDSILESQGVIV---KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 64 C~G~G~~~~~~~~~~G~~~---~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
|+|+|+++ +.+..|++. +.+|+.|.|+|+++ |+.|+|+|++.
T Consensus 171 C~G~G~~~--~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 218 (365)
T PRK14290 171 CHGTGQQR--IVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVV 218 (365)
T ss_pred CCCcCEEE--EEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEE
Confidence 99999863 233347643 68999999999988 99999999864
No 25
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=1.3e-16 Score=125.90 Aligned_cols=95 Identities=25% Similarity=0.633 Sum_probs=76.3
Q ss_pred cchhHhhhCC-------------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCc
Q 037534 13 RSSLESLFCY-------------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCS 65 (108)
Q Consensus 13 ~~~f~~~f~~-------------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~ 65 (108)
.++|++||+. .++.++.|+.++|.|+|+|+|+|. .+.|+.|+|+|. ..|+.|+
T Consensus 88 ~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~ 167 (374)
T PRK14293 88 ADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCG 167 (374)
T ss_pred HHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCC
Confidence 3578888851 013468899999999999999998 689999999997 5799999
Q ss_pred CCceEeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 66 GSGLYVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 66 G~G~~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
|+|.+...++...|+++ +.+|+.|.|+|+++ |..|.|+|++.
T Consensus 168 G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 213 (374)
T PRK14293 168 GAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQ 213 (374)
T ss_pred CcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccc
Confidence 99987311122236666 88999999999997 99999999864
No 26
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=1e-16 Score=126.96 Aligned_cols=83 Identities=28% Similarity=0.610 Sum_probs=70.2
Q ss_pred CCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeeeEEeecCcEE-EeeCCCC
Q 037534 25 PIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDSILESQGVIV-KVPCLGC 89 (108)
Q Consensus 25 ~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C 89 (108)
+.++.|+.+.|.|+|+|+|+|+ .+.|+.|+|+|. ..|+.|+|+|.++...+...|+++ +.+|+.|
T Consensus 124 ~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 203 (386)
T PRK14289 124 VFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTC 203 (386)
T ss_pred CCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCC
Confidence 3478999999999999999998 689999999996 689999999997421122237766 8999999
Q ss_pred CCcceEE---CCCCCCceEeC
Q 037534 90 GGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 90 ~G~G~~~---C~~C~G~G~~~ 107 (108)
.|+|+++ |..|+|+|++.
T Consensus 204 ~G~G~~~~~~C~~C~G~g~v~ 224 (386)
T PRK14289 204 NGEGKIIKKKCKKCGGEGIVY 224 (386)
T ss_pred CccccccCcCCCCCCCCcEEe
Confidence 9999988 99999999874
No 27
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=1.3e-16 Score=125.67 Aligned_cols=97 Identities=28% Similarity=0.594 Sum_probs=79.1
Q ss_pred cccchhHhhhCCC---------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc-------ccCCCCcC
Q 037534 11 RRRSSLESLFCYD---------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV-------VLCATCSG 66 (108)
Q Consensus 11 ~~~~~f~~~f~~~---------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~-------~~C~~C~G 66 (108)
++.++|++||+.. ++.++.|+.+.+.|+|+|+|+|. ...|+.|+|+|. ..|+.|+|
T Consensus 86 d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G 165 (371)
T PRK14292 86 DPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRG 165 (371)
T ss_pred ChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCC
Confidence 3457789998731 24578999999999999999998 689999999996 57999999
Q ss_pred CceEeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 67 SGLYVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 67 ~G~~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
+|.+...++...|+++ +.+|+.|.|.|+.+ |+.|+|+|++.
T Consensus 166 ~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 210 (371)
T PRK14292 166 AGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTL 210 (371)
T ss_pred ccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEe
Confidence 9987422222337776 88999999999998 99999999863
No 28
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=3.7e-16 Score=123.54 Aligned_cols=83 Identities=27% Similarity=0.615 Sum_probs=69.8
Q ss_pred CCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeeeEEeecCcEE-EeeCCCC
Q 037534 25 PIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDSILESQGVIV-KVPCLGC 89 (108)
Q Consensus 25 ~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C 89 (108)
++++.|+.++|.|+|+|+|+|. .+.|+.|+|+|. ..|+.|+|+|+++...+...|+++ +.+|+.|
T Consensus 116 ~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 195 (378)
T PRK14283 116 PQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDC 195 (378)
T ss_pred ccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCC
Confidence 4579999999999999999998 689999999986 679999999997411111236665 8899999
Q ss_pred CCcceEE---CCCCCCceEeC
Q 037534 90 GGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 90 ~G~G~~~---C~~C~G~G~~~ 107 (108)
.|+|+.+ |..|+|+|++.
T Consensus 196 ~G~G~~~~~~C~~C~G~g~v~ 216 (378)
T PRK14283 196 QGEGKIVEKPCSNCHGKGVVR 216 (378)
T ss_pred CccceecCCCCCCCCCceeec
Confidence 9999987 99999999864
No 29
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=8.3e-16 Score=121.72 Aligned_cols=78 Identities=33% Similarity=0.738 Sum_probs=67.8
Q ss_pred CCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeeeEEeecCcEE-EeeCCCCC
Q 037534 26 IPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDSILESQGVIV-KVPCLGCG 90 (108)
Q Consensus 26 ~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C~ 90 (108)
.++.|+.+.|.|+|+|+|+|+ .+.|+.|+|+|. ..|+.|+|+|.+ ....|+++ +++|+.|.
T Consensus 127 ~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~----~~~~g~~~~~~~C~~C~ 202 (382)
T PRK14291 127 VKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEI----YQRGGFFRISQTCPTCG 202 (382)
T ss_pred cCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEE----EEecceEEEEecCCCCC
Confidence 378999999999999999998 689999999996 689999999996 23346665 89999999
Q ss_pred CcceEE--CCCCCCceEeC
Q 037534 91 GTGNIM--CAECGGRGHCS 107 (108)
Q Consensus 91 G~G~~~--C~~C~G~G~~~ 107 (108)
|+|.+. |..|+|.|++.
T Consensus 203 G~G~~~~~C~~C~G~g~v~ 221 (382)
T PRK14291 203 GEGVLREPCSKCNGRGLVI 221 (382)
T ss_pred CceEEccCCCCCCCCceEE
Confidence 999654 99999999864
No 30
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.4e-15 Score=117.45 Aligned_cols=89 Identities=27% Similarity=0.636 Sum_probs=75.9
Q ss_pred hHhhhCCC-----CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc-----ccCCCCcCCceEeeeEEee
Q 037534 16 LESLFCYD-----KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV-----VLCATCSGSGLYVDSILES 77 (108)
Q Consensus 16 f~~~f~~~-----~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~-----~~C~~C~G~G~~~~~~~~~ 77 (108)
|++||+++ .+.|+.|+++.|+|+|+|+|.|. +.+|+.|+|+|. ..|+.|.|+|... +..
T Consensus 83 f~~~F~~g~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~---~~~ 159 (337)
T KOG0712|consen 83 FSQFFGFGGNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQT---RTR 159 (337)
T ss_pred HHHhccCCCcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCcee---EEE
Confidence 89999853 45679999999999999999996 899999999998 5799999999863 333
Q ss_pred c---CcEE--EeeCCCCCCcceEE-----CCCCCCceEeC
Q 037534 78 Q---GVIV--KVPCLGCGGTGNIM-----CAECGGRGHCS 107 (108)
Q Consensus 78 ~---G~~~--~~~C~~C~G~G~~~-----C~~C~G~G~~~ 107 (108)
+ |+.+ +.+|..|+|.|..+ |+.|.|+++++
T Consensus 160 ~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~ 199 (337)
T KOG0712|consen 160 QMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVR 199 (337)
T ss_pred eccccccccceeEeccCCCccccccccccCcccccchhhh
Confidence 2 5555 89999999999983 99999999864
No 31
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.40 E-value=8.3e-13 Score=81.22 Aligned_cols=55 Identities=38% Similarity=0.921 Sum_probs=40.1
Q ss_pred cCCccCcCc------ccCCCCcCCceEeeeEEeecCcEE-EeeCCCCCCcceEE----CCCCCCce
Q 037534 50 CIECKAKGV------VLCATCSGSGLYVDSILESQGVIV-KVPCLGCGGTGNIM----CAECGGRG 104 (108)
Q Consensus 50 C~~C~G~G~------~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C~G~G~~~----C~~C~G~G 104 (108)
|+.|+|+|. .+|+.|+|+|+++...+...++++ +++|+.|+|+|+++ |+.|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 889999998 799999999997421221225565 99999999999997 99999986
No 32
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.33 E-value=1.1e-11 Score=83.54 Aligned_cols=58 Identities=31% Similarity=0.767 Sum_probs=49.4
Q ss_pred ccccCCccCcCcccCCCCcCCceEeeeEEeecCcEE-EeeCCCCCCcceEECCCCCCceEeC
Q 037534 47 NPRCIECKAKGVVLCATCSGSGLYVDSILESQGVIV-KVPCLGCGGTGNIMCAECGGRGHCS 107 (108)
Q Consensus 47 ~~~C~~C~G~G~~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C~G~G~~~C~~C~G~G~~~ 107 (108)
.+.|+.|+|+|...|+.|+|+|.+. ....++++ +.+|+.|.|+|+.+|+.|+|+|+++
T Consensus 41 ~v~C~~C~GsG~~~C~~C~G~G~v~---~~~~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~~ 99 (111)
T PLN03165 41 TQPCFPCSGTGAQVCRFCVGSGNVT---VELGGGEKEVSKCINCDGAGSLTCTTCQGSGIQP 99 (111)
T ss_pred CCCCCCCCCCCCcCCCCCcCcCeEE---EEeCCcEEEEEECCCCCCcceeeCCCCCCCEEEe
Confidence 6899999999999999999999973 22224344 8899999999999999999999875
No 33
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.6e-07 Score=70.47 Aligned_cols=22 Identities=41% Similarity=0.990 Sum_probs=15.6
Q ss_pred ccccCCccCcCcccCCCCcCCc
Q 037534 47 NPRCIECKAKGVVLCATCSGSG 68 (108)
Q Consensus 47 ~~~C~~C~G~G~~~C~~C~G~G 68 (108)
...|..|.|.|...|+.|+|.|
T Consensus 187 v~~ch~c~gRG~~vc~gc~g~G 208 (406)
T KOG2813|consen 187 VTFCHACLGRGAMVCHGCSGSG 208 (406)
T ss_pred hhhhhcccCCCceeccCcCCCC
Confidence 4567777777777777777777
No 34
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.1e-06 Score=67.69 Aligned_cols=93 Identities=27% Similarity=0.533 Sum_probs=74.3
Q ss_pred ccccchhHhhhCC-C-CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeee
Q 037534 10 HRRRSSLESLFCY-D-KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDS 73 (108)
Q Consensus 10 ~~~~~~f~~~f~~-~-~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~ 73 (108)
.++.+.|+.+|++ . +...+.++.+.+.+.|+++..|. ...|..|.|.|. ..|..|.|+|.+.
T Consensus 117 g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-- 194 (288)
T KOG0715|consen 117 GNPFDVFLEFFGGKMNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVS-- 194 (288)
T ss_pred CCccchHHHhhcccccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhCccccc--
Confidence 3678999999987 2 33456788888999999999998 689999999997 7899999999641
Q ss_pred EEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEe
Q 037534 74 ILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHC 106 (108)
Q Consensus 74 ~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~ 106 (108)
.....++. . +|..|.+.|.+. |..|.|.|.+
T Consensus 195 -~~~~~~f~~~-~~~~c~~~~~~~~~~c~~~~g~~~v 229 (288)
T KOG0715|consen 195 -NPKEDPFILY-TCSYCLGRGLVLRDNCQACSGAGQV 229 (288)
T ss_pred -ccccCCccee-ecccccccceeccchHHHhhcchhh
Confidence 21222222 4 899999999998 9999999854
No 35
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.1e-06 Score=68.36 Aligned_cols=39 Identities=36% Similarity=0.885 Sum_probs=34.9
Q ss_pred ccccCCccCcCc-------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534 47 NPRCIECKAKGV-------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM 96 (108)
Q Consensus 47 ~~~C~~C~G~G~-------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~ 96 (108)
.++|+.|+|+|. ++|+.|+|+|.++ ..+|+.|+|.|.+.
T Consensus 159 ~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-----------~~pC~~C~G~G~v~ 210 (371)
T COG0484 159 PKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-----------KDPCGKCKGKGRVK 210 (371)
T ss_pred CCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-----------CCCCCCCCCCCeEe
Confidence 789999999996 6899999999974 77999999999864
No 36
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=98.15 E-value=1.3e-06 Score=72.76 Aligned_cols=58 Identities=36% Similarity=0.893 Sum_probs=44.4
Q ss_pred cccCCccCcCc-----ccCCCCcCCceEeeeEEe---e---c----CcEE-EeeCCCCCCcceEE----CCCCCCceEe
Q 037534 48 PRCIECKAKGV-----VLCATCSGSGLYVDSILE---S---Q----GVIV-KVPCLGCGGTGNIM----CAECGGRGHC 106 (108)
Q Consensus 48 ~~C~~C~G~G~-----~~C~~C~G~G~~~~~~~~---~---~----G~~~-~~~C~~C~G~G~~~----C~~C~G~G~~ 106 (108)
..|+.|+|+|. ..|+.|+|+|.+.. ... . . +++. ..+|+.|.|+|.+. |+.|.|+|.+
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~-~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv 80 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDD-FDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKV 80 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccc-cChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeE
Confidence 57999999998 67999999998621 110 0 0 2223 56999999999986 9999999976
No 37
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.92 E-value=1e-05 Score=49.52 Aligned_cols=38 Identities=34% Similarity=0.950 Sum_probs=27.1
Q ss_pred CCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE---------------CCCCCCceEe
Q 037534 61 CATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM---------------CAECGGRGHC 106 (108)
Q Consensus 61 C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~---------------C~~C~G~G~~ 106 (108)
|+.|+|+|... .. ...+|+.|+|+|.++ |+.|+|+|.+
T Consensus 1 C~~C~G~G~~~---~~-----~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~ 53 (66)
T PF00684_consen 1 CPKCNGTGAKP---GK-----KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKI 53 (66)
T ss_dssp -CCCTTTSB-S---TT-----T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE
T ss_pred CCcCCCcccCC---CC-----CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeE
Confidence 78999999831 00 167899999999874 9999999987
No 38
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=8.8e-06 Score=63.89 Aligned_cols=46 Identities=33% Similarity=0.857 Sum_probs=34.0
Q ss_pred ccccCCccCcCc--------cc-----------------CCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEECCCCC
Q 037534 47 NPRCIECKAKGV--------VL-----------------CATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECG 101 (108)
Q Consensus 47 ~~~C~~C~G~G~--------~~-----------------C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~C~~C~ 101 (108)
...|+.|+|.|. .. |..|+|+|. .+|++|.|+|++.|.+|.
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~--------------~~C~tC~grG~k~C~TC~ 263 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGI--------------KECHTCKGRGKKPCTTCS 263 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCc--------------ccCCcccCCCCccccccc
Confidence 889999999993 34 445555554 368888888888888888
Q ss_pred CceEe
Q 037534 102 GRGHC 106 (108)
Q Consensus 102 G~G~~ 106 (108)
|.|.+
T Consensus 264 gtgsl 268 (406)
T KOG2813|consen 264 GTGSL 268 (406)
T ss_pred Cccce
Confidence 88754
No 39
>PRK14278 chaperone protein DnaJ; Provisional
Probab=97.45 E-value=0.00017 Score=57.43 Aligned_cols=38 Identities=34% Similarity=0.852 Sum_probs=31.7
Q ss_pred ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.++ ..+|+.|.|+|.+
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 208 (378)
T PRK14278 156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-----------PDPCHECAGDGRV 208 (378)
T ss_pred ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-----------CCCCCCCCCceeE
Confidence 568999999985 4799999999963 5679999999975
No 40
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.43 E-value=0.00015 Score=60.89 Aligned_cols=45 Identities=36% Similarity=0.995 Sum_probs=32.2
Q ss_pred ccccCCccCcCc------------------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE-CCCCC
Q 037534 47 NPRCIECKAKGV------------------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM-CAECG 101 (108)
Q Consensus 47 ~~~C~~C~G~G~------------------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~-C~~C~ 101 (108)
...|+.|+|+|. ..|+.|+|+|.+. . ..+|+.|.|+|++. |..|.
T Consensus 18 ~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~---v-------~~~c~~c~G~gkv~~c~~cG 87 (715)
T COG1107 18 EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVT---V-------YDTCPECGGTGKVLTCDICG 87 (715)
T ss_pred eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEE---E-------EeecccCCCceeEEeecccc
Confidence 566888888774 4788888888751 1 55788888888876 77663
No 41
>PRK14296 chaperone protein DnaJ; Provisional
Probab=97.42 E-value=0.00025 Score=56.35 Aligned_cols=59 Identities=24% Similarity=0.540 Sum_probs=38.8
Q ss_pred CCCCceEEEEEe-cchhhccCc-------ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEE
Q 037534 26 IPEERIEKSISV-SLSEKVIGD-------NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIV 82 (108)
Q Consensus 26 ~rg~di~~~l~i-~l~e~~~G~-------~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~ 82 (108)
..|....+.+.. .+-....|. ...|+.|+|+|. ..|+.|+|+|.++
T Consensus 137 ~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~----------- 205 (372)
T PRK14296 137 LFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII----------- 205 (372)
T ss_pred hCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-----------
Confidence 345554444432 233444443 567899998885 3789999999863
Q ss_pred EeeCCCCCCcceE
Q 037534 83 KVPCLGCGGTGNI 95 (108)
Q Consensus 83 ~~~C~~C~G~G~~ 95 (108)
...|+.|.|.|.+
T Consensus 206 ~~~C~~C~G~g~v 218 (372)
T PRK14296 206 KNKCKNCKGKGKY 218 (372)
T ss_pred cccccCCCCceEE
Confidence 5678899888865
No 42
>PRK14288 chaperone protein DnaJ; Provisional
Probab=97.41 E-value=0.00027 Score=56.08 Aligned_cols=38 Identities=34% Similarity=0.892 Sum_probs=30.4
Q ss_pred ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.++ ...|+.|.|.|.+
T Consensus 156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 204 (369)
T PRK14288 156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-----------KTPCQACKGKTYI 204 (369)
T ss_pred CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-----------cccCccCCCcceE
Confidence 568999999885 4699999999863 5679999998865
No 43
>PRK14298 chaperone protein DnaJ; Provisional
Probab=97.40 E-value=0.00011 Score=58.59 Aligned_cols=39 Identities=38% Similarity=0.940 Sum_probs=33.1
Q ss_pred ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534 47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM 96 (108)
Q Consensus 47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~ 96 (108)
...|+.|+|+|. ..|+.|+|+|.++ ...|+.|.|+|.+.
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v~ 211 (377)
T PRK14298 158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-----------ESPCPVCSGTGKVR 211 (377)
T ss_pred CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-----------CCCCCCCCCccEEE
Confidence 478999999995 4799999999963 56899999999763
No 44
>PRK14279 chaperone protein DnaJ; Provisional
Probab=97.39 E-value=0.00011 Score=58.78 Aligned_cols=37 Identities=38% Similarity=0.904 Sum_probs=20.2
Q ss_pred cccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 48 PRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 48 ~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
..|+.|+|+|. ..|+.|+|+|.++ ...|..|.|.|.+
T Consensus 191 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-----------~~~C~~C~G~g~v 238 (392)
T PRK14279 191 KVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-----------EDPCEECKGTGVT 238 (392)
T ss_pred CCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-----------CCcCCCCCCCeEE
Confidence 45666666554 3466666666542 3456666665544
No 45
>PRK14282 chaperone protein DnaJ; Provisional
Probab=97.39 E-value=0.00025 Score=56.18 Aligned_cols=38 Identities=34% Similarity=0.823 Sum_probs=30.2
Q ss_pred ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.++ ...|+.|.|.|.+
T Consensus 169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 221 (369)
T PRK14282 169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-----------GEYCHECGGSGRI 221 (369)
T ss_pred CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-----------CCCCCCCCCceeE
Confidence 568999999885 3699999999863 5679999998854
No 46
>PRK14301 chaperone protein DnaJ; Provisional
Probab=97.37 E-value=0.0002 Score=56.90 Aligned_cols=38 Identities=34% Similarity=0.882 Sum_probs=28.8
Q ss_pred ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.++ ...|+.|.|+|.+
T Consensus 161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 209 (373)
T PRK14301 161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-----------THPCPKCKGSGIV 209 (373)
T ss_pred CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-----------CCCCCCCCCCcee
Confidence 467888888875 4788888888863 5578888888865
No 47
>PRK14300 chaperone protein DnaJ; Provisional
Probab=97.36 E-value=0.00013 Score=57.91 Aligned_cols=38 Identities=34% Similarity=0.845 Sum_probs=30.0
Q ss_pred ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.++ ..+|+.|.|+|.+
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 210 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-----------KNPCKKCHGMGRY 210 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-----------CCCCCCCCCceEE
Confidence 567888888885 4688888888863 5678888888875
No 48
>PRK14286 chaperone protein DnaJ; Provisional
Probab=97.29 E-value=0.00017 Score=57.21 Aligned_cols=39 Identities=36% Similarity=0.882 Sum_probs=31.0
Q ss_pred ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534 47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM 96 (108)
Q Consensus 47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~ 96 (108)
...|+.|+|+|. ..|+.|+|+|.++ ...|+.|.|+|.+.
T Consensus 167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~~~ 216 (372)
T PRK14286 167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-----------SNPCKTCGGQGLQE 216 (372)
T ss_pred CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-----------cccCCCCCCCcEEe
Confidence 478999999885 4799999999863 56799999988763
No 49
>PRK14285 chaperone protein DnaJ; Provisional
Probab=97.26 E-value=0.00019 Score=56.93 Aligned_cols=38 Identities=32% Similarity=0.864 Sum_probs=30.7
Q ss_pred ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.++ ..+|..|.|+|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 211 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-----------SNPCKSCKGKGSL 211 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCccccc-----------CCCCCCCCCCCEE
Confidence 467999999885 4799999999863 5679999999865
No 50
>PRK14294 chaperone protein DnaJ; Provisional
Probab=97.26 E-value=0.00019 Score=56.82 Aligned_cols=39 Identities=31% Similarity=0.831 Sum_probs=32.3
Q ss_pred ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534 47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM 96 (108)
Q Consensus 47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~ 96 (108)
...|+.|+|+|. ..|+.|+|+|.++ ...|+.|.|.|.+.
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v~ 210 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-----------VSPCKTCHGQGRVR 210 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-----------CcCCCCCCCceEee
Confidence 468999999986 4799999999863 66799999998763
No 51
>PRK14280 chaperone protein DnaJ; Provisional
Probab=97.26 E-value=0.0002 Score=56.97 Aligned_cols=39 Identities=31% Similarity=0.814 Sum_probs=32.9
Q ss_pred ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534 47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM 96 (108)
Q Consensus 47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~ 96 (108)
...|+.|+|+|. ..|+.|+|+|.++ ..+|+.|.|+|.+.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v~ 213 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-----------KEKCPTCHGKGKVR 213 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-----------cCCCCCCCCceEEE
Confidence 578999999985 4799999999963 66799999999763
No 52
>PRK14295 chaperone protein DnaJ; Provisional
Probab=97.25 E-value=0.00021 Score=57.11 Aligned_cols=38 Identities=37% Similarity=0.876 Sum_probs=27.6
Q ss_pred ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.++ ..+|+.|.|.|.+
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~~ 231 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-----------DDPCLVCKGSGRA 231 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-----------ccCCCCCCCCceE
Confidence 467888888775 4688888888753 5568888887765
No 53
>PRK14284 chaperone protein DnaJ; Provisional
Probab=97.23 E-value=0.00017 Score=57.59 Aligned_cols=38 Identities=37% Similarity=0.846 Sum_probs=27.4
Q ss_pred ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.++ ..+|+.|.|.|.+
T Consensus 175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 223 (391)
T PRK14284 175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-----------TDPCSVCRGQGRI 223 (391)
T ss_pred CeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-----------CCcCCCCCCccee
Confidence 467888888775 4688888888752 4568888887764
No 54
>PRK14289 chaperone protein DnaJ; Provisional
Probab=97.22 E-value=0.00037 Score=55.52 Aligned_cols=38 Identities=39% Similarity=0.953 Sum_probs=28.5
Q ss_pred ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.++ ...|+.|.|+|.+
T Consensus 171 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 223 (386)
T PRK14289 171 SETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-----------KKKCKKCGGEGIV 223 (386)
T ss_pred CCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-----------CcCCCCCCCCcEE
Confidence 577888888876 2688888888752 5578888888865
No 55
>PRK14276 chaperone protein DnaJ; Provisional
Probab=97.21 E-value=0.00021 Score=56.92 Aligned_cols=38 Identities=42% Similarity=0.943 Sum_probs=32.4
Q ss_pred ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.++ ..+|+.|.|.|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~~ 215 (380)
T PRK14276 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-----------KEPCQTCHGTGHE 215 (380)
T ss_pred CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-----------cCCCCCCCCceEE
Confidence 578999999985 4799999999963 6689999999975
No 56
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.19 E-value=0.00037 Score=47.04 Aligned_cols=35 Identities=31% Similarity=0.757 Sum_probs=26.2
Q ss_pred ccccCCccCcCc------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.+ .|+.|.|+|.+
T Consensus 52 ~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~--------------~C~~C~G~G~~ 98 (111)
T PLN03165 52 AQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL--------------TCTTCQGSGIQ 98 (111)
T ss_pred CcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee--------------eCCCCCCCEEE
Confidence 457888888775 478888888874 38888888764
No 57
>PRK10767 chaperone protein DnaJ; Provisional
Probab=97.15 E-value=0.00029 Score=55.77 Aligned_cols=38 Identities=37% Similarity=0.906 Sum_probs=27.4
Q ss_pred ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. .+|+.|+|+|.++ ...|+.|.|+|.+
T Consensus 159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 207 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-----------KDPCKKCHGQGRV 207 (371)
T ss_pred CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-----------CCCCCCCCCCceE
Confidence 357888888875 3588888888752 4568888888765
No 58
>PRK14277 chaperone protein DnaJ; Provisional
Probab=97.15 E-value=0.00027 Score=56.36 Aligned_cols=38 Identities=39% Similarity=0.920 Sum_probs=32.7
Q ss_pred ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.++ ...|..|.|+|.+
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 224 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII-----------TDPCNKCGGTGRI 224 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec-----------cCCCCCCCCCcEE
Confidence 578999999986 4799999999963 5689999999976
No 59
>PRK14290 chaperone protein DnaJ; Provisional
Probab=97.14 E-value=0.00036 Score=55.21 Aligned_cols=38 Identities=34% Similarity=0.800 Sum_probs=32.9
Q ss_pred ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.++ ...|+.|.|+|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 217 (365)
T PRK14290 165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-----------EEKCPRCNGTGTV 217 (365)
T ss_pred CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-----------cCCCCCCCCceeE
Confidence 578999999994 4799999999963 6789999999986
No 60
>PRK14291 chaperone protein DnaJ; Provisional
Probab=97.13 E-value=0.00039 Score=55.38 Aligned_cols=37 Identities=35% Similarity=0.928 Sum_probs=26.5
Q ss_pred ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.+ ...|..|.|.|.+
T Consensus 173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~------------~~~C~~C~G~g~v 220 (382)
T PRK14291 173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL------------REPCSKCNGRGLV 220 (382)
T ss_pred CccCCCCCCceEEEEecceEEEEecCCCCCCceEE------------ccCCCCCCCCceE
Confidence 467888888775 468888888853 4568888887754
No 61
>PRK14281 chaperone protein DnaJ; Provisional
Probab=97.11 E-value=0.00036 Score=55.89 Aligned_cols=38 Identities=37% Similarity=0.783 Sum_probs=32.8
Q ss_pred ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. .+|+.|+|+|.++ ...|+.|.|.|.+
T Consensus 179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 231 (397)
T PRK14281 179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-----------KDRCPACYGEGIK 231 (397)
T ss_pred CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-----------CCCCCCCCCCccE
Confidence 678999999995 4699999999963 5689999999976
No 62
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=97.10 E-value=0.00033 Score=55.06 Aligned_cols=39 Identities=36% Similarity=0.882 Sum_probs=33.0
Q ss_pred ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534 47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM 96 (108)
Q Consensus 47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~ 96 (108)
...|+.|+|+|. ..|+.|+|+|.++ ...|+.|.|+|.+.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v~ 213 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-----------KEPCSTCKGKGRVK 213 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-----------CCCCCCCCCCcEec
Confidence 578999999985 4799999999963 56799999999763
No 63
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=97.09 E-value=0.00031 Score=51.34 Aligned_cols=28 Identities=36% Similarity=0.832 Sum_probs=15.0
Q ss_pred ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 59 VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 59 ~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
..|+.|+|+|.++ .. ..+|+.|+|+|++
T Consensus 100 ~~C~~C~G~G~~i---~~------~~~C~~C~G~G~v 127 (186)
T TIGR02642 100 CKCPRCRGTGLIQ---RR------QRECDTCAGTGRF 127 (186)
T ss_pred CcCCCCCCeeEEe---cC------CCCCCCCCCccEE
Confidence 4566666666642 10 2356666666654
No 64
>PRK14297 chaperone protein DnaJ; Provisional
Probab=97.07 E-value=0.00041 Score=55.19 Aligned_cols=38 Identities=34% Similarity=0.886 Sum_probs=32.3
Q ss_pred ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.++ ...|..|.|.|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 217 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-----------EDPCNKCHGKGKV 217 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-----------CCCCCCCCCCeEE
Confidence 578999999985 4799999999963 5689999999964
No 65
>PRK14293 chaperone protein DnaJ; Provisional
Probab=96.93 E-value=0.00059 Score=54.17 Aligned_cols=38 Identities=37% Similarity=0.904 Sum_probs=32.5
Q ss_pred ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.++ ...|..|.|+|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 212 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-----------EDPCDACGGQGVK 212 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-----------ccCCCCCCCCccc
Confidence 568999999996 3799999999963 5689999999975
No 66
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=96.92 E-value=0.00076 Score=54.60 Aligned_cols=41 Identities=27% Similarity=0.707 Sum_probs=33.3
Q ss_pred ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534 47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM 96 (108)
Q Consensus 47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~ 96 (108)
...|+.|+|+|. ..|+.|+|+|.++ . . ..+|+.|.|+|.+.
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i---~-~-----~~~C~~C~G~g~v~ 221 (421)
T PTZ00037 166 FVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKII---P-E-----SKKCKNCSGKGVKK 221 (421)
T ss_pred CccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceec---c-c-----cccCCcCCCcceee
Confidence 678999999994 4799999999973 1 0 46899999999763
No 67
>PRK14287 chaperone protein DnaJ; Provisional
Probab=96.91 E-value=0.00055 Score=54.37 Aligned_cols=38 Identities=34% Similarity=0.939 Sum_probs=32.3
Q ss_pred ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.++ ...|..|.|.|.+
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 207 (371)
T PRK14287 155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-----------KQKCATCGGKGKV 207 (371)
T ss_pred CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-----------cccCCCCCCeeEE
Confidence 578999999985 4799999999963 6679999999865
No 68
>PRK14283 chaperone protein DnaJ; Provisional
Probab=96.84 E-value=0.00077 Score=53.58 Aligned_cols=38 Identities=34% Similarity=0.871 Sum_probs=32.5
Q ss_pred ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. .+|+.|+|+|.++ ..+|..|.|+|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 215 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-----------EKPCSNCHGKGVV 215 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-----------CCCCCCCCCceee
Confidence 578999999987 3699999999963 5679999999975
No 69
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0021 Score=49.54 Aligned_cols=51 Identities=25% Similarity=0.556 Sum_probs=40.5
Q ss_pred cccCCccCcCcccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEECCCCC
Q 037534 48 PRCIECKAKGVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECG 101 (108)
Q Consensus 48 ~~C~~C~G~G~~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~C~~C~ 101 (108)
-.|..|.|.+...|..|+|+=.++ ...........|+.|+..|.+.|+.|.
T Consensus 230 ~~C~~CGg~rFlpC~~C~GS~kv~---~~~~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARFLPCSNCHGSCKVH---EEEEDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CcCCCcCCcceEecCCCCCceeee---eeccCCCcEEECcccCCCCceeCCccC
Confidence 789999999999999999998862 211111226789999999999999996
No 70
>PRK14292 chaperone protein DnaJ; Provisional
Probab=96.70 E-value=0.0012 Score=52.26 Aligned_cols=38 Identities=34% Similarity=0.868 Sum_probs=32.2
Q ss_pred ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|..+ ...|+.|.|+|.+
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 209 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-----------TDPCTVCRGRGRT 209 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-----------CCCCCCCCCceEE
Confidence 478999999996 3699999999963 6789999999976
No 71
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.69 E-value=0.0013 Score=48.07 Aligned_cols=25 Identities=32% Similarity=0.934 Sum_probs=20.2
Q ss_pred ccccCCccCcCc-----ccCCCCcCCceEe
Q 037534 47 NPRCIECKAKGV-----VLCATCSGSGLYV 71 (108)
Q Consensus 47 ~~~C~~C~G~G~-----~~C~~C~G~G~~~ 71 (108)
...|+.|+|+|. ..|+.|+|+|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEe
Confidence 678999999987 2499999999863
No 72
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.06 E-value=0.0083 Score=42.19 Aligned_cols=48 Identities=25% Similarity=0.517 Sum_probs=33.8
Q ss_pred ccccCCccCcCcccCCCCcCCceEeeeEEee-cCcEEEeeCCCCCCcceEEC
Q 037534 47 NPRCIECKAKGVVLCATCSGSGLYVDSILES-QGVIVKVPCLGCGGTGNIMC 97 (108)
Q Consensus 47 ~~~C~~C~G~G~~~C~~C~G~G~~~~~~~~~-~G~~~~~~C~~C~G~G~~~C 97 (108)
...|..|.|.+-+.|..|+|+=.++ ... .+......|+.|+..|.+.|
T Consensus 99 ~~~C~~Cgg~rfv~C~~C~Gs~k~~---~~~~~~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 99 GGVCEGCGGARFVPCSECNGSCKVF---AENATAAGGFLRCPECNENGLVRC 147 (147)
T ss_pred CCCCCCCCCcCeEECCCCCCcceEE---eccCcccccEEECCCCCccccccC
Confidence 4579999999999999999988863 111 01112567888888777654
No 73
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=94.89 E-value=0.032 Score=43.17 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=28.3
Q ss_pred cccchhHhhhCC-C------CCCCCCceEEEEEecchhhccCc
Q 037534 11 RRRSSLESLFCY-D------KPIPEERIEKSISVSLSEKVIGD 46 (108)
Q Consensus 11 ~~~~~f~~~f~~-~------~~~rg~di~~~l~i~l~e~~~G~ 46 (108)
++.++|+.||+. . .++++.|+.+++.|+|+|++.|.
T Consensus 93 ~~~~~f~~~~g~~~~~~~~~~~~kg~di~~~v~isLee~~~G~ 135 (306)
T PRK10266 93 DFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEH 135 (306)
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCCCCceEEEEEEEHHHhcCCc
Confidence 445677888873 1 23468999999999999999998
No 74
>PRK14299 chaperone protein DnaJ; Provisional
Probab=94.80 E-value=0.03 Score=43.08 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=28.2
Q ss_pred cccchhHhhhCC-C--------------CCCCCCceEEEEEecchhhccCc
Q 037534 11 RRRSSLESLFCY-D--------------KPIPEERIEKSISVSLSEKVIGD 46 (108)
Q Consensus 11 ~~~~~f~~~f~~-~--------------~~~rg~di~~~l~i~l~e~~~G~ 46 (108)
+..++|++||+. . .++++.|+.+++.|+|+|+|.|.
T Consensus 97 ~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~ 147 (291)
T PRK14299 97 DFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGG 147 (291)
T ss_pred CHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCC
Confidence 344678888862 1 13468999999999999999998
No 75
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=0.083 Score=41.90 Aligned_cols=40 Identities=35% Similarity=0.914 Sum_probs=30.5
Q ss_pred ccccCCccCcCc----------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV----------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~----------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|..|.|+|. ..|..|+|+|..+ .. ...|+.|.|++.+
T Consensus 143 ~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~---~~------kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 143 APKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETI---SL------KDRCKTCSGAKVV 198 (337)
T ss_pred CCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccc---cc------cccCcccccchhh
Confidence 567999999886 5788888888841 11 6689999998865
No 76
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=90.44 E-value=0.39 Score=33.72 Aligned_cols=35 Identities=31% Similarity=0.946 Sum_probs=28.0
Q ss_pred ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE------------CCCCCCceEeC
Q 037534 59 VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM------------CAECGGRGHCS 107 (108)
Q Consensus 59 ~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~------------C~~C~G~G~~~ 107 (108)
..|..|.|.+.+ +|+.|+|+=++. |+.|+-.|.+.
T Consensus 100 ~~C~~Cgg~rfv--------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~ 146 (147)
T cd03031 100 GVCEGCGGARFV--------------PCSECNGSCKVFAENATAAGGFLRCPECNENGLVR 146 (147)
T ss_pred CCCCCCCCcCeE--------------ECCCCCCcceEEeccCcccccEEECCCCCcccccc
Confidence 579999998886 799999975442 99999888763
No 77
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.34 E-value=0.33 Score=43.15 Aligned_cols=32 Identities=28% Similarity=0.590 Sum_probs=19.9
Q ss_pred ccCCCCcCCceEeeeEEeecCcEE--EeeCCCCCCcce
Q 037534 59 VLCATCSGSGLYVDSILESQGVIV--KVPCLGCGGTGN 94 (108)
Q Consensus 59 ~~C~~C~G~G~~~~~~~~~~G~~~--~~~C~~C~G~G~ 94 (108)
-.|+.|.|.|++. ...+++. ..+|+.|+|+..
T Consensus 737 G~C~~C~G~G~~~----~~~~f~~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 737 GRCEACQGDGVIK----IEMHFLPDVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCCccceEEE----EEccCCCCcccCCCCcCCcee
Confidence 3588889999862 2223322 667777777653
No 78
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.61 E-value=0.83 Score=35.43 Aligned_cols=35 Identities=31% Similarity=0.934 Sum_probs=28.0
Q ss_pred ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE-----------CCCCCCceEeC
Q 037534 59 VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM-----------CAECGGRGHCS 107 (108)
Q Consensus 59 ~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~-----------C~~C~G~G~~~ 107 (108)
..|..|.|.+.+ +|..|+|+-++. |..|+-.|.+.
T Consensus 230 ~~C~~CGg~rFl--------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARFL--------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcceE--------------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 479999988886 799999886554 99999888763
No 79
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=83.56 E-value=0.74 Score=41.06 Aligned_cols=31 Identities=29% Similarity=0.632 Sum_probs=18.7
Q ss_pred cCCCCcCCceEeeeEEeecCcEE--EeeCCCCCCcce
Q 037534 60 LCATCSGSGLYVDSILESQGVIV--KVPCLGCGGTGN 94 (108)
Q Consensus 60 ~C~~C~G~G~~~~~~~~~~G~~~--~~~C~~C~G~G~ 94 (108)
.|+.|.|.|++. ....++. ..+|+.|+|+..
T Consensus 740 ~C~~C~G~G~~~----~~~~f~~~~~~~C~~C~G~R~ 772 (943)
T PRK00349 740 RCEACQGDGVIK----IEMHFLPDVYVPCDVCKGKRY 772 (943)
T ss_pred CCCcccccceEE----EEeccCCCccccCccccCccc
Confidence 588888888862 2222221 557777777643
No 80
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.58 E-value=1.2 Score=39.75 Aligned_cols=23 Identities=35% Similarity=0.774 Sum_probs=18.4
Q ss_pred eeCCCCCCcceEE------------CCCCCCceEe
Q 037534 84 VPCLGCGGTGNIM------------CAECGGRGHC 106 (108)
Q Consensus 84 ~~C~~C~G~G~~~------------C~~C~G~G~~ 106 (108)
-.|+.|.|.|.+. |+.|+|+++.
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 771 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYN 771 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeC
Confidence 3499999999875 9999988764
No 81
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=80.30 E-value=1.2 Score=42.43 Aligned_cols=31 Identities=29% Similarity=0.589 Sum_probs=19.8
Q ss_pred cCCCCcCCceEeeeEEeecCcEE--EeeCCCCCCcce
Q 037534 60 LCATCSGSGLYVDSILESQGVIV--KVPCLGCGGTGN 94 (108)
Q Consensus 60 ~C~~C~G~G~~~~~~~~~~G~~~--~~~C~~C~G~G~ 94 (108)
+|+.|.|.|++. ....++- ..+|+.|+|+.+
T Consensus 1609 rC~~C~G~G~i~----i~m~fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1609 QCSDCWGLGYQW----IDRAFYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCccCceEE----EecccCCCcccCCCCCCCcCC
Confidence 688888999862 2222222 677888877653
No 82
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=78.92 E-value=1.1 Score=33.95 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=16.7
Q ss_pred cccCCccCcCcccCCCCcCCceE
Q 037534 48 PRCIECKAKGVVLCATCSGSGLY 70 (108)
Q Consensus 48 ~~C~~C~G~G~~~C~~C~G~G~~ 70 (108)
..+..-.|.+..+||.|+|+|++
T Consensus 28 ~py~e~~g~~~vtCPTCqGtGrI 50 (238)
T PF07092_consen 28 FPYVEFTGRDSVTCPTCQGTGRI 50 (238)
T ss_pred CccccccCCCCCcCCCCcCCccC
Confidence 34444556666899999999985
No 83
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=78.87 E-value=0.75 Score=35.58 Aligned_cols=38 Identities=32% Similarity=0.932 Sum_probs=30.7
Q ss_pred ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|..|.|+|. .+|..|+|.|.++ ...|..|.|.|.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~-----------~~~c~~~~g~~~v 229 (288)
T KOG0715|consen 181 RESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVL-----------RDNCQACSGAGQV 229 (288)
T ss_pred cccchhhhCcccccccccCCcceeecccccccceec-----------cchHHHhhcchhh
Confidence 789999999993 3499999999973 3349999998854
No 84
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=74.30 E-value=3.2 Score=36.91 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=18.6
Q ss_pred ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcc
Q 037534 59 VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTG 93 (108)
Q Consensus 59 ~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G 93 (108)
-+|..|.|.|.++ |...+-+-...+|+.|+|+-
T Consensus 731 GRCe~C~GdG~ik--IeM~FLpdVyv~CevC~GkR 763 (935)
T COG0178 731 GRCEACQGDGVIK--IEMHFLPDVYVPCEVCHGKR 763 (935)
T ss_pred cCCccccCCceEE--EEeccCCCceeeCCCcCCcc
Confidence 3788888888862 22111111156777777753
No 85
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=72.97 E-value=2.2 Score=38.12 Aligned_cols=22 Identities=36% Similarity=0.854 Sum_probs=18.6
Q ss_pred eCCCCCCcceEE------------CCCCCCceEe
Q 037534 85 PCLGCGGTGNIM------------CAECGGRGHC 106 (108)
Q Consensus 85 ~C~~C~G~G~~~------------C~~C~G~G~~ 106 (108)
.|+.|.|.|.+. |+.|+|+.+.
T Consensus 740 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 773 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYN 773 (943)
T ss_pred CCCcccccceEEEEeccCCCccccCccccCcccc
Confidence 499999999875 9999998764
No 86
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=72.87 E-value=0.9 Score=29.67 Aligned_cols=37 Identities=38% Similarity=0.673 Sum_probs=22.4
Q ss_pred ccCCCCcCCceEeeeEEe-ec-CcEEEeeCCCCCCcceE
Q 037534 59 VLCATCSGSGLYVDSILE-SQ-GVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 59 ~~C~~C~G~G~~~~~~~~-~~-G~~~~~~C~~C~G~G~~ 95 (108)
..|..|+|.|..++.... .+ |+-.-..|+.|.|+|..
T Consensus 6 ~~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 6 DSCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYS 44 (95)
T ss_pred CCcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCC
Confidence 467888888876422111 12 54445678888887754
No 87
>PF14353 CpXC: CpXC protein
Probab=71.97 E-value=6.3 Score=26.34 Aligned_cols=36 Identities=17% Similarity=0.359 Sum_probs=19.7
Q ss_pred ccCCCCcCCceEeeeEEeec------------CcEEEeeCCCCCCcce
Q 037534 59 VLCATCSGSGLYVDSILESQ------------GVIVKVPCLGCGGTGN 94 (108)
Q Consensus 59 ~~C~~C~G~G~~~~~~~~~~------------G~~~~~~C~~C~G~G~ 94 (108)
.+||.|+-.....-+..... |.+...+||.|+....
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 36777877776321111110 3344778888876654
No 88
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=70.26 E-value=2.7 Score=40.05 Aligned_cols=10 Identities=40% Similarity=0.853 Sum_probs=5.9
Q ss_pred CCCCCCcceE
Q 037534 86 CLGCGGTGNI 95 (108)
Q Consensus 86 C~~C~G~G~~ 95 (108)
|+.|.|.|.+
T Consensus 1610 C~~C~G~G~i 1619 (1809)
T PRK00635 1610 CSDCWGLGYQ 1619 (1809)
T ss_pred CCCCccCceE
Confidence 6666666654
No 89
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=66.66 E-value=3.9 Score=24.80 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=17.0
Q ss_pred EEEecchhhccCc-ccccCCcc
Q 037534 34 SISVSLSEKVIGD-NPRCIECK 54 (108)
Q Consensus 34 ~l~i~l~e~~~G~-~~~C~~C~ 54 (108)
..+|+|+++.+|- ...||.|.
T Consensus 30 RFeIsLeDl~~GE~VArCPSCS 51 (67)
T COG5216 30 RFEISLEDLRNGEVVARCPSCS 51 (67)
T ss_pred EeEEEHHHhhCCceEEEcCCce
Confidence 4678999999998 67788773
No 90
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=65.11 E-value=8.5 Score=30.67 Aligned_cols=30 Identities=30% Similarity=0.841 Sum_probs=20.8
Q ss_pred ccccCCccCcCcccCCCCcCCceEeeeEEeecCcEE
Q 037534 47 NPRCIECKAKGVVLCATCSGSGLYVDSILESQGVIV 82 (108)
Q Consensus 47 ~~~C~~C~G~G~~~C~~C~G~G~~~~~~~~~~G~~~ 82 (108)
.+.|..|+|.| |+.|.++|++ ....-|++.
T Consensus 260 dv~~~~~~g~g---c~~ck~~~Wi---EilG~Gmv~ 289 (339)
T PRK00488 260 DVSCFKCGGKG---CRVCKGTGWL---EILGCGMVH 289 (339)
T ss_pred EEEEeccCCCc---ccccCCCCce---EEeccCccC
Confidence 66788888765 8899999986 233335543
No 91
>PRK04023 DNA polymerase II large subunit; Validated
Probab=64.95 E-value=6.8 Score=35.57 Aligned_cols=53 Identities=21% Similarity=0.508 Sum_probs=34.9
Q ss_pred cchhhcc--Cc------ccccCCccCcCc-ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE-ECCCCCC
Q 037534 38 SLSEKVI--GD------NPRCIECKAKGV-VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI-MCAECGG 102 (108)
Q Consensus 38 ~l~e~~~--G~------~~~C~~C~G~G~-~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~-~C~~C~G 102 (108)
++.+|+. |. ...|+.|.-... ..|+.|+..-.. ...|+.|.-.... .|+.|.-
T Consensus 609 ~i~~A~~~~g~~eVEVg~RfCpsCG~~t~~frCP~CG~~Te~------------i~fCP~CG~~~~~y~CPKCG~ 671 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIGRRKCPSCGKETFYRRCPFCGTHTEP------------VYRCPRCGIEVEEDECEKCGR 671 (1121)
T ss_pred cHHHHHhcCCceeecccCccCCCCCCcCCcccCCCCCCCCCc------------ceeCccccCcCCCCcCCCCCC
Confidence 3566666 32 679999976544 789999876332 3478888555432 3888864
No 92
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=64.40 E-value=3.3 Score=31.48 Aligned_cols=24 Identities=25% Similarity=0.708 Sum_probs=12.8
Q ss_pred EeeCCCCCCcceEECCCCCCceEe
Q 037534 83 KVPCLGCGGTGNIMCAECGGRGHC 106 (108)
Q Consensus 83 ~~~C~~C~G~G~~~C~~C~G~G~~ 106 (108)
+.++-.-.|++.+.|++|.|.|++
T Consensus 27 ~~py~e~~g~~~vtCPTCqGtGrI 50 (238)
T PF07092_consen 27 SFPYVEFTGRDSVTCPTCQGTGRI 50 (238)
T ss_pred cCccccccCCCCCcCCCCcCCccC
Confidence 344444555555556666666654
No 93
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=63.73 E-value=4.7 Score=35.94 Aligned_cols=23 Identities=35% Similarity=0.769 Sum_probs=18.1
Q ss_pred eeCCCCCCcceEE------------CCCCCCceEe
Q 037534 84 VPCLGCGGTGNIM------------CAECGGRGHC 106 (108)
Q Consensus 84 ~~C~~C~G~G~~~------------C~~C~G~G~~ 106 (108)
=.|..|.|.|.+. |..|+|+.|-
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn 765 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYN 765 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCcccc
Confidence 4688898888775 8888888763
No 94
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=59.78 E-value=15 Score=21.03 Aligned_cols=33 Identities=24% Similarity=0.631 Sum_probs=17.7
Q ss_pred ccCCCCcCCceEeeeEEeec---CcEEEeeCCCCCCcce
Q 037534 59 VLCATCSGSGLYVDSILESQ---GVIVKVPCLGCGGTGN 94 (108)
Q Consensus 59 ~~C~~C~G~G~~~~~~~~~~---G~~~~~~C~~C~G~G~ 94 (108)
..||.|.|....+ +... +-.....|..|+..|.
T Consensus 2 kPCPfCGg~~~~~---~~~~~~~~~~~~~~C~~Cga~~~ 37 (53)
T TIGR03655 2 KPCPFCGGADVYL---RRGFDPLDLSHYFECSTCGASGP 37 (53)
T ss_pred CCCCCCCCcceee---EeccCCCCCEEEEECCCCCCCcc
Confidence 3688888887742 2111 1111236777766553
No 95
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=59.24 E-value=17 Score=33.79 Aligned_cols=44 Identities=25% Similarity=0.651 Sum_probs=29.6
Q ss_pred ccccCCccCcCc-ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCc------ceEECCCCCC
Q 037534 47 NPRCIECKAKGV-VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGT------GNIMCAECGG 102 (108)
Q Consensus 47 ~~~C~~C~G~G~-~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~------G~~~C~~C~G 102 (108)
...||.|..... ..|+.|...=.. ...|+.|+.. +...|+.|.-
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~------------vy~CPsCGaev~~des~a~~CP~CGt 717 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEP------------VYVCPDCGAEVPPDESGRVECPRCDV 717 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCC------------ceeCccCCCccCCCccccccCCCCCC
Confidence 578999976433 689999876432 3478888763 2223888864
No 96
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=57.42 E-value=5.9 Score=21.20 Aligned_cols=10 Identities=20% Similarity=0.467 Sum_probs=5.9
Q ss_pred cCCCCcCCce
Q 037534 60 LCATCSGSGL 69 (108)
Q Consensus 60 ~C~~C~G~G~ 69 (108)
+||.|+-.-.
T Consensus 4 ~CP~C~~~f~ 13 (37)
T PF13719_consen 4 TCPNCQTRFR 13 (37)
T ss_pred ECCCCCceEE
Confidence 5666665544
No 97
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=54.88 E-value=8.4 Score=21.27 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=4.9
Q ss_pred cCCCCcCCce
Q 037534 60 LCATCSGSGL 69 (108)
Q Consensus 60 ~C~~C~G~G~ 69 (108)
.||.|.|+..
T Consensus 5 pCP~CGG~Dr 14 (40)
T PF08273_consen 5 PCPICGGKDR 14 (40)
T ss_dssp --TTTT-TTT
T ss_pred CCCCCcCccc
Confidence 5777777765
No 98
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=54.33 E-value=7.1 Score=24.08 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=14.9
Q ss_pred ceEEEEEecchhhccCc
Q 037534 30 RIEKSISVSLSEKVIGD 46 (108)
Q Consensus 30 di~~~l~i~l~e~~~G~ 46 (108)
|+..++.|+|.||+.|.
T Consensus 1 DL~~~~~I~l~~al~G~ 17 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGG 17 (81)
T ss_dssp EEEEEEEEEHHHHHH-E
T ss_pred CeEEEEEeCHHHHhCCC
Confidence 68899999999999998
No 99
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=49.90 E-value=23 Score=22.01 Aligned_cols=20 Identities=30% Similarity=0.911 Sum_probs=10.3
Q ss_pred EeeCCCCCCcceEE---------CCCCCC
Q 037534 83 KVPCLGCGGTGNIM---------CAECGG 102 (108)
Q Consensus 83 ~~~C~~C~G~G~~~---------C~~C~G 102 (108)
...||.|+-.=.+. |..|+|
T Consensus 30 ~a~CPdC~~~Le~LkACGAvdYFC~~c~g 58 (70)
T PF07191_consen 30 EAFCPDCGQPLEVLKACGAVDYFCNHCHG 58 (70)
T ss_dssp EEE-TTT-SB-EEEEETTEEEEE-TTTT-
T ss_pred cccCCCcccHHHHHHHhcccceeeccCCc
Confidence 67888887653333 887775
No 100
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=49.19 E-value=27 Score=18.74 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=6.8
Q ss_pred EEEeeCCCCCC
Q 037534 81 IVKVPCLGCGG 91 (108)
Q Consensus 81 ~~~~~C~~C~G 91 (108)
+....|+.|+|
T Consensus 17 ~~id~C~~C~G 27 (41)
T PF13453_consen 17 VEIDVCPSCGG 27 (41)
T ss_pred EEEEECCCCCe
Confidence 33556777766
No 101
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=49.02 E-value=36 Score=22.50 Aligned_cols=19 Identities=37% Similarity=0.850 Sum_probs=11.4
Q ss_pred EeeCCCCCCcceEE------CCCCC
Q 037534 83 KVPCLGCGGTGNIM------CAECG 101 (108)
Q Consensus 83 ~~~C~~C~G~G~~~------C~~C~ 101 (108)
-..|..|.++|... |..|.
T Consensus 35 ~daCeiC~~~GY~q~g~~lvC~~C~ 59 (102)
T PF10080_consen 35 FDACEICGPKGYYQEGDQLVCKNCG 59 (102)
T ss_pred EEeccccCCCceEEECCEEEEecCC
Confidence 55566666666554 66664
No 102
>PRK14299 chaperone protein DnaJ; Provisional
Probab=48.37 E-value=10 Score=29.08 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=19.7
Q ss_pred CCCCceEEEEEecchhhccCc
Q 037534 26 IPEERIEKSISVSLSEKVIGD 46 (108)
Q Consensus 26 ~rg~di~~~l~i~l~e~~~G~ 46 (108)
++|.|+.+.+.|+|.+|+.|.
T Consensus 198 R~G~DL~~~~~Isl~eAl~G~ 218 (291)
T PRK14299 198 LEGDDLYATVDVPAPIAVVGG 218 (291)
T ss_pred EECCEEEEEEecCHHHHhCCC
Confidence 468999999999999999998
No 103
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=47.44 E-value=13 Score=24.88 Aligned_cols=23 Identities=30% Similarity=0.804 Sum_probs=14.0
Q ss_pred cCcccccCCccCcCc------ccCCCCcC
Q 037534 44 IGDNPRCIECKAKGV------VLCATCSG 66 (108)
Q Consensus 44 ~G~~~~C~~C~G~G~------~~C~~C~G 66 (108)
.|.+.+|+.|.-+-. ..||.|+-
T Consensus 6 lGtKR~Cp~CG~kFYDLnk~PivCP~CG~ 34 (108)
T PF09538_consen 6 LGTKRTCPSCGAKFYDLNKDPIVCPKCGT 34 (108)
T ss_pred cCCcccCCCCcchhccCCCCCccCCCCCC
Confidence 355777777754433 56777643
No 104
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=45.90 E-value=49 Score=17.87 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=15.9
Q ss_pred cCCCCcCCceEeeeEEeec---CcEEEeeCCCCC
Q 037534 60 LCATCSGSGLYVDSILESQ---GVIVKVPCLGCG 90 (108)
Q Consensus 60 ~C~~C~G~G~~~~~~~~~~---G~~~~~~C~~C~ 90 (108)
.|+.|+....+.-.++... ++..-..|..|+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCC
Confidence 5889987776531111211 333355666664
No 105
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=45.52 E-value=20 Score=17.68 Aligned_cols=7 Identities=43% Similarity=1.341 Sum_probs=4.0
Q ss_pred EeeCCCC
Q 037534 83 KVPCLGC 89 (108)
Q Consensus 83 ~~~C~~C 89 (108)
...||.|
T Consensus 16 ~f~CPnC 22 (24)
T PF07754_consen 16 PFPCPNC 22 (24)
T ss_pred eEeCCCC
Confidence 4456666
No 106
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.17 E-value=15 Score=22.49 Aligned_cols=20 Identities=25% Similarity=0.645 Sum_probs=16.4
Q ss_pred EEecchhhccCc-ccccCCcc
Q 037534 35 ISVSLSEKVIGD-NPRCIECK 54 (108)
Q Consensus 35 l~i~l~e~~~G~-~~~C~~C~ 54 (108)
..|+++++-+|- ...||.|.
T Consensus 31 f~It~edL~~ge~Va~CpsCS 51 (67)
T KOG2923|consen 31 FQITLEDLENGEDVARCPSCS 51 (67)
T ss_pred eeecHHHHhCCCeeecCCCce
Confidence 679999999998 67777763
No 107
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=43.46 E-value=38 Score=17.62 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=5.8
Q ss_pred cCCCCcCCce
Q 037534 60 LCATCSGSGL 69 (108)
Q Consensus 60 ~C~~C~G~G~ 69 (108)
.||.|+-.-.
T Consensus 4 ~CP~C~~~~~ 13 (38)
T TIGR02098 4 QCPNCKTSFR 13 (38)
T ss_pred ECCCCCCEEE
Confidence 5666665544
No 108
>PRK05978 hypothetical protein; Provisional
Probab=42.69 E-value=13 Score=26.20 Aligned_cols=8 Identities=38% Similarity=0.966 Sum_probs=5.0
Q ss_pred EeeCCCCC
Q 037534 83 KVPCLGCG 90 (108)
Q Consensus 83 ~~~C~~C~ 90 (108)
...|+.|+
T Consensus 52 ~~~C~~CG 59 (148)
T PRK05978 52 VDHCAACG 59 (148)
T ss_pred CCCccccC
Confidence 55677774
No 109
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=41.97 E-value=14 Score=19.64 Aligned_cols=10 Identities=20% Similarity=0.551 Sum_probs=5.0
Q ss_pred cCCCCcCCce
Q 037534 60 LCATCSGSGL 69 (108)
Q Consensus 60 ~C~~C~G~G~ 69 (108)
+|+.|+-.=.
T Consensus 4 ~Cp~C~~~y~ 13 (36)
T PF13717_consen 4 TCPNCQAKYE 13 (36)
T ss_pred ECCCCCCEEe
Confidence 4555554433
No 110
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=40.07 E-value=48 Score=24.22 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=19.8
Q ss_pred cCCCCcCCceEe-eeEE-eec-CcE--EEeeCCCCCCc
Q 037534 60 LCATCSGSGLYV-DSIL-ESQ-GVI--VKVPCLGCGGT 92 (108)
Q Consensus 60 ~C~~C~G~G~~~-~~~~-~~~-G~~--~~~~C~~C~G~ 92 (108)
.|+.|+..|... ..+. ++. +-+ +...|+.|+=+
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr 39 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYR 39 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCc
Confidence 589999888742 1122 221 332 37889999654
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=39.42 E-value=40 Score=29.60 Aligned_cols=48 Identities=27% Similarity=0.628 Sum_probs=32.6
Q ss_pred ccccCCccCcCcccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE--CCCCCCc
Q 037534 47 NPRCIECKAKGVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM--CAECGGR 103 (108)
Q Consensus 47 ~~~C~~C~G~G~~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~--C~~C~G~ 103 (108)
...|..|.-. ..|+.|...=.. +...+ +..|..|+-+..+. |+.|.+.
T Consensus 435 ~l~C~~Cg~v--~~Cp~Cd~~lt~----H~~~~---~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 435 LLLCRDCGYI--AECPNCDSPLTL----HKATG---QLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred eeecccCCCc--ccCCCCCcceEE----ecCCC---eeEeCCCCCCCCCCCCCCCCCCC
Confidence 5789999644 689999865322 22112 77899997774443 9999876
No 112
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=39.05 E-value=19 Score=27.75 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=19.4
Q ss_pred CCCCceEEEEEecchhhccCc
Q 037534 26 IPEERIEKSISVSLSEKVIGD 46 (108)
Q Consensus 26 ~rg~di~~~l~i~l~e~~~G~ 46 (108)
+.|.|+.+++.|+|.+++.|.
T Consensus 206 r~g~DL~~~~~Isl~~al~G~ 226 (306)
T PRK10266 206 IVGQDLEIVVPLAPWEAALGA 226 (306)
T ss_pred EeCCceEEEEecCHHHHhCCC
Confidence 458999999999999999998
No 113
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=37.47 E-value=58 Score=23.07 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=18.8
Q ss_pred cCCCCcCCceEe-eeEEeec-Cc--EEEeeCCCCCCc
Q 037534 60 LCATCSGSGLYV-DSILESQ-GV--IVKVPCLGCGGT 92 (108)
Q Consensus 60 ~C~~C~G~G~~~-~~~~~~~-G~--~~~~~C~~C~G~ 92 (108)
.|+.|+..|... ..+.++. +- .....|+.|+=+
T Consensus 2 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk 38 (160)
T smart00709 2 DCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYR 38 (160)
T ss_pred cCCCCCCCCEEEEEEecCCCcceEEEEEEECCCCCCc
Confidence 588998888631 1111121 22 227789999654
No 114
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=37.31 E-value=13 Score=27.09 Aligned_cols=39 Identities=23% Similarity=0.600 Sum_probs=26.3
Q ss_pred ccccCCccCcCcccCCCCcCCceEeeeEEeecCcEEEeeCCCCCC
Q 037534 47 NPRCIECKAKGVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGG 91 (108)
Q Consensus 47 ~~~C~~C~G~G~~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G 91 (108)
...|+.|.+.| ..|.-|+....+. +...-....|+.|..
T Consensus 142 V~~C~lC~~kG-fiCe~C~~~~~If-----PF~~~~~~~C~~C~~ 180 (202)
T PF13901_consen 142 VYSCELCQQKG-FICEICNSDDIIF-----PFQIDTTVRCPKCKS 180 (202)
T ss_pred HHHhHHHHhCC-CCCccCCCCCCCC-----CCCCCCeeeCCcCcc
Confidence 45999999998 5899999886541 111111567887754
No 115
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.19 E-value=50 Score=27.39 Aligned_cols=49 Identities=33% Similarity=0.709 Sum_probs=30.3
Q ss_pred ccccCCccCcCcccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE--CCCCCCce
Q 037534 47 NPRCIECKAKGVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM--CAECGGRG 104 (108)
Q Consensus 47 ~~~C~~C~G~G~~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~--C~~C~G~G 104 (108)
...|..|.-. ..|+.|.+.=.. +...+ ...|..|+-+-... |+.|.+..
T Consensus 213 ~~~C~~Cg~~--~~C~~C~~~l~~----h~~~~---~l~Ch~Cg~~~~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 213 NLLCRSCGYI--LCCPNCDVSLTY----HKKEG---KLRCHYCGYQEPIPKTCPQCGSED 263 (505)
T ss_pred eeEhhhCcCc--cCCCCCCCceEE----ecCCC---eEEcCCCcCcCCCCCCCCCCCCCe
Confidence 4678888644 689999864321 22111 56788886544433 88887653
No 116
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=37.09 E-value=54 Score=17.56 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=14.1
Q ss_pred cCCCCcCCceEeeeEEeec---CcEEEeeCCCCC
Q 037534 60 LCATCSGSGLYVDSILESQ---GVIVKVPCLGCG 90 (108)
Q Consensus 60 ~C~~C~G~G~~~~~~~~~~---G~~~~~~C~~C~ 90 (108)
.|+.|+....+.-.++... ++..-..|..|+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~ 35 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCG 35 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSST
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCC
Confidence 6888988877531111111 333355676663
No 117
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=37.04 E-value=17 Score=26.58 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=15.6
Q ss_pred ccccCCccCcCc--ccCCCCcCCce
Q 037534 47 NPRCIECKAKGV--VLCATCSGSGL 69 (108)
Q Consensus 47 ~~~C~~C~G~G~--~~C~~C~G~G~ 69 (108)
-..|..|.+.-. ..||.|...|.
T Consensus 162 cilCtvCe~r~w~g~~CPKCGr~G~ 186 (200)
T PF12387_consen 162 CILCTVCEGREWKGGNCPKCGRHGK 186 (200)
T ss_pred eEEEeeeecCccCCCCCCcccCCCC
Confidence 356777776554 56777777776
No 118
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=35.77 E-value=20 Score=16.19 Aligned_cols=8 Identities=38% Similarity=1.157 Sum_probs=3.2
Q ss_pred CCCCcCCc
Q 037534 61 CATCSGSG 68 (108)
Q Consensus 61 C~~C~G~G 68 (108)
|..|+..|
T Consensus 3 C~~C~~~G 10 (18)
T PF00098_consen 3 CFNCGEPG 10 (18)
T ss_dssp CTTTSCSS
T ss_pred CcCCCCcC
Confidence 33444433
No 119
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=35.26 E-value=31 Score=29.77 Aligned_cols=42 Identities=29% Similarity=0.763 Sum_probs=26.1
Q ss_pred cccCCccC---cCcccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCc---ceEECCCCCC
Q 037534 48 PRCIECKA---KGVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGT---GNIMCAECGG 102 (108)
Q Consensus 48 ~~C~~C~G---~G~~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~---G~~~C~~C~G 102 (108)
..||.|+. .+...|+.|+..-. ...|+.|+-. |...|+.|.-
T Consensus 2 ~~Cp~Cg~~n~~~akFC~~CG~~l~-------------~~~Cp~CG~~~~~~~~fC~~CG~ 49 (645)
T PRK14559 2 LICPQCQFENPNNNRFCQKCGTSLT-------------HKPCPQCGTEVPVDEAHCPNCGA 49 (645)
T ss_pred CcCCCCCCcCCCCCccccccCCCCC-------------CCcCCCCCCCCCcccccccccCC
Confidence 57999964 34478999943322 3468888554 2222888853
No 120
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=34.71 E-value=43 Score=17.51 Aligned_cols=12 Identities=33% Similarity=1.016 Sum_probs=7.4
Q ss_pred ccCCCCcCCceE
Q 037534 59 VLCATCSGSGLY 70 (108)
Q Consensus 59 ~~C~~C~G~G~~ 70 (108)
..|+.|++.+.+
T Consensus 4 ~~C~~C~~~~i~ 15 (33)
T PF08792_consen 4 KKCSKCGGNGIV 15 (33)
T ss_pred eEcCCCCCCeEE
Confidence 356667766654
No 121
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=34.64 E-value=44 Score=26.31 Aligned_cols=10 Identities=50% Similarity=1.129 Sum_probs=5.3
Q ss_pred ccCCCCcCCc
Q 037534 59 VLCATCSGSG 68 (108)
Q Consensus 59 ~~C~~C~G~G 68 (108)
..|+.|.-++
T Consensus 227 ~~C~~Cg~~~ 236 (309)
T PRK03564 227 VKCSNCEQSG 236 (309)
T ss_pred ccCCCCCCCC
Confidence 4566665444
No 122
>PF15616 TerY-C: TerY-C metal binding domain
Probab=34.63 E-value=77 Score=21.92 Aligned_cols=14 Identities=29% Similarity=0.987 Sum_probs=7.3
Q ss_pred cccCCccCc-CcccC
Q 037534 48 PRCIECKAK-GVVLC 61 (108)
Q Consensus 48 ~~C~~C~G~-G~~~C 61 (108)
--||+|... +-..|
T Consensus 78 PgCP~CGn~~~fa~C 92 (131)
T PF15616_consen 78 PGCPHCGNQYAFAVC 92 (131)
T ss_pred CCCCCCcChhcEEEe
Confidence 567777544 33444
No 123
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=33.94 E-value=62 Score=22.87 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=16.1
Q ss_pred cCCCCcCCceEe-eeEEeec-Cc--EEEeeCCCCCCc
Q 037534 60 LCATCSGSGLYV-DSILESQ-GV--IVKVPCLGCGGT 92 (108)
Q Consensus 60 ~C~~C~G~G~~~-~~~~~~~-G~--~~~~~C~~C~G~ 92 (108)
.|+.|+..|... ..+.++. +- ++...|+.|+=+
T Consensus 3 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk 39 (161)
T PF03367_consen 3 LCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGYK 39 (161)
T ss_dssp E-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--E
T ss_pred cCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCCE
Confidence 688999998642 1111121 22 227789999644
No 124
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.69 E-value=29 Score=28.81 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=11.4
Q ss_pred ccccCCccCc-------CcccCCCCcCC
Q 037534 47 NPRCIECKAK-------GVVLCATCSGS 67 (108)
Q Consensus 47 ~~~C~~C~G~-------G~~~C~~C~G~ 67 (108)
...|+.|++. +...|..|+-+
T Consensus 222 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~ 249 (505)
T TIGR00595 222 ILCCPNCDVSLTYHKKEGKLRCHYCGYQ 249 (505)
T ss_pred ccCCCCCCCceEEecCCCeEEcCCCcCc
Confidence 6667777632 12456666533
No 125
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=29.98 E-value=43 Score=18.12 Aligned_cols=9 Identities=22% Similarity=0.807 Sum_probs=6.4
Q ss_pred cCCCCcCCc
Q 037534 60 LCATCSGSG 68 (108)
Q Consensus 60 ~C~~C~G~G 68 (108)
.||.|..+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 577777766
No 126
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=29.85 E-value=24 Score=28.70 Aligned_cols=13 Identities=38% Similarity=0.841 Sum_probs=8.9
Q ss_pred EeeCCCCCCcceE
Q 037534 83 KVPCLGCGGTGNI 95 (108)
Q Consensus 83 ~~~C~~C~G~G~~ 95 (108)
..+||.|+|+|++
T Consensus 390 ~~~Cp~C~G~G~v 402 (414)
T TIGR00757 390 GTVCPHCSGTGIV 402 (414)
T ss_pred cCCCCCCcCeeEE
Confidence 4567777777765
No 127
>PRK02935 hypothetical protein; Provisional
Probab=29.49 E-value=30 Score=23.28 Aligned_cols=19 Identities=26% Similarity=0.871 Sum_probs=12.9
Q ss_pred EeeCCCCCCcceEE-----CCCCC
Q 037534 83 KVPCLGCGGTGNIM-----CAECG 101 (108)
Q Consensus 83 ~~~C~~C~G~G~~~-----C~~C~ 101 (108)
+..||.|+-.-++. |..|+
T Consensus 70 qV~CP~C~K~TKmLGrvD~CM~C~ 93 (110)
T PRK02935 70 QVICPSCEKPTKMLGRVDACMHCN 93 (110)
T ss_pred eeECCCCCchhhhccceeecCcCC
Confidence 77788887654443 77775
No 128
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=29.10 E-value=34 Score=22.68 Aligned_cols=23 Identities=26% Similarity=0.687 Sum_probs=12.6
Q ss_pred ccccCCccCcCc-----ccCCCCcCCce
Q 037534 47 NPRCIECKAKGV-----VLCATCSGSGL 69 (108)
Q Consensus 47 ~~~C~~C~G~G~-----~~C~~C~G~G~ 69 (108)
...|..|..... ..||.|++...
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PRK12380 70 QAWCWDCSQVVEIHQHDAQCPHCHGERL 97 (113)
T ss_pred EEEcccCCCEEecCCcCccCcCCCCCCc
Confidence 456666653332 34777766554
No 129
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=28.26 E-value=22 Score=21.38 Aligned_cols=28 Identities=25% Similarity=0.540 Sum_probs=9.1
Q ss_pred chhhccCc--ccccCCccCcCc-------ccCCCCcC
Q 037534 39 LSEKVIGD--NPRCIECKAKGV-------VLCATCSG 66 (108)
Q Consensus 39 l~e~~~G~--~~~C~~C~G~G~-------~~C~~C~G 66 (108)
+-+.|.+. .+.|..|+.+.. .+|..|+.
T Consensus 20 mP~~Y~~~~v~IlCNDC~~~s~v~fH~lg~KC~~C~S 56 (61)
T PF14599_consen 20 MPEEYRNKKVWILCNDCNAKSEVPFHFLGHKCSHCGS 56 (61)
T ss_dssp --------EEEEEESSS--EEEEE--TT----TTTS-
T ss_pred CCHHHhCCEEEEECCCCCCccceeeeHhhhcCCCCCC
Confidence 44555554 677777766554 45666653
No 130
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=27.84 E-value=41 Score=23.32 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=14.8
Q ss_pred cCcccccCCccCcCc------ccCCCCcCC
Q 037534 44 IGDNPRCIECKAKGV------VLCATCSGS 67 (108)
Q Consensus 44 ~G~~~~C~~C~G~G~------~~C~~C~G~ 67 (108)
.|.+.+|+.|.-+-. ..||.|+-.
T Consensus 6 lGtKr~Cp~cg~kFYDLnk~p~vcP~cg~~ 35 (129)
T TIGR02300 6 LGTKRICPNTGSKFYDLNRRPAVSPYTGEQ 35 (129)
T ss_pred hCccccCCCcCccccccCCCCccCCCcCCc
Confidence 355777887754433 667777543
No 131
>PRK00420 hypothetical protein; Validated
Probab=27.75 E-value=47 Score=22.36 Aligned_cols=7 Identities=29% Similarity=0.354 Sum_probs=3.3
Q ss_pred EeeCCCC
Q 037534 83 KVPCLGC 89 (108)
Q Consensus 83 ~~~C~~C 89 (108)
+..||.|
T Consensus 40 ~~~Cp~C 46 (112)
T PRK00420 40 EVVCPVH 46 (112)
T ss_pred ceECCCC
Confidence 3445555
No 132
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=27.24 E-value=63 Score=21.22 Aligned_cols=7 Identities=29% Similarity=0.990 Sum_probs=3.4
Q ss_pred ccCCCCc
Q 037534 59 VLCATCS 65 (108)
Q Consensus 59 ~~C~~C~ 65 (108)
..|+.|+
T Consensus 22 f~CP~Cg 28 (99)
T PRK14892 22 FECPRCG 28 (99)
T ss_pred eECCCCC
Confidence 3455555
No 133
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=26.97 E-value=46 Score=21.95 Aligned_cols=24 Identities=21% Similarity=0.588 Sum_probs=14.9
Q ss_pred ccccCCccCcCc-----ccCCCCcCCceE
Q 037534 47 NPRCIECKAKGV-----VLCATCSGSGLY 70 (108)
Q Consensus 47 ~~~C~~C~G~G~-----~~C~~C~G~G~~ 70 (108)
...|..|.-... ..||.|++....
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~ 98 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEFDFSCPRCGSPDVE 98 (113)
T ss_dssp EEEETTTS-EEECHHCCHH-SSSSSS-EE
T ss_pred cEECCCCCCEEecCCCCCCCcCCcCCCcE
Confidence 567888876554 568888888753
No 134
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=26.64 E-value=22 Score=31.89 Aligned_cols=44 Identities=25% Similarity=0.591 Sum_probs=0.0
Q ss_pred ccccCCccCcCc-ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE-ECCCCCC
Q 037534 47 NPRCIECKAKGV-VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI-MCAECGG 102 (108)
Q Consensus 47 ~~~C~~C~G~G~-~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~-~C~~C~G 102 (108)
...|+.|.-... ..|+.|...=.. ...|+.|.-.-.. .|+.|.-
T Consensus 655 ~r~Cp~Cg~~t~~~~Cp~CG~~T~~------------~~~Cp~C~~~~~~~~C~~C~~ 700 (900)
T PF03833_consen 655 RRRCPKCGKETFYNRCPECGSHTEP------------VYVCPDCGIEVEEDECPKCGR 700 (900)
T ss_dssp ----------------------------------------------------------
T ss_pred cccCcccCCcchhhcCcccCCcccc------------ceeccccccccCccccccccc
Confidence 567888854444 678877765443 3467777543221 2777753
No 135
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=26.39 E-value=69 Score=19.58 Aligned_cols=10 Identities=20% Similarity=0.660 Sum_probs=4.9
Q ss_pred cCCCCcCCce
Q 037534 60 LCATCSGSGL 69 (108)
Q Consensus 60 ~C~~C~G~G~ 69 (108)
+|..|..+-.
T Consensus 6 TC~~C~~Rs~ 15 (66)
T PF05180_consen 6 TCNKCGTRSA 15 (66)
T ss_dssp EETTTTEEEE
T ss_pred EcCCCCCccc
Confidence 4555554443
No 136
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=26.32 E-value=32 Score=20.06 Aligned_cols=7 Identities=29% Similarity=0.700 Sum_probs=3.8
Q ss_pred EeeCCCC
Q 037534 83 KVPCLGC 89 (108)
Q Consensus 83 ~~~C~~C 89 (108)
...||.|
T Consensus 19 ~~~CPrC 25 (51)
T COG1998 19 NRFCPRC 25 (51)
T ss_pred cccCCCC
Confidence 4456666
No 137
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=25.84 E-value=99 Score=16.63 Aligned_cols=10 Identities=40% Similarity=0.953 Sum_probs=5.7
Q ss_pred cCCCCcCCce
Q 037534 60 LCATCSGSGL 69 (108)
Q Consensus 60 ~C~~C~G~G~ 69 (108)
.||.|.|+..
T Consensus 5 pCP~CGG~Dr 14 (37)
T smart00778 5 PCPNCGGSDR 14 (37)
T ss_pred CCCCCCCccc
Confidence 4666666554
No 138
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=25.73 E-value=41 Score=29.56 Aligned_cols=34 Identities=24% Similarity=0.619 Sum_probs=20.7
Q ss_pred ccccCCccCc-------CcccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCc
Q 037534 47 NPRCIECKAK-------GVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGT 92 (108)
Q Consensus 47 ~~~C~~C~G~-------G~~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~ 92 (108)
...|+.|... +...|..|+=+..+ ...||.|++.
T Consensus 444 v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~------------p~~Cp~Cgs~ 484 (730)
T COG1198 444 IAECPNCDSPLTLHKATGQLRCHYCGYQEPI------------PQSCPECGSE 484 (730)
T ss_pred cccCCCCCcceEEecCCCeeEeCCCCCCCCC------------CCCCCCCCCC
Confidence 5677777642 23667777665443 5567777665
No 139
>PRK14873 primosome assembly protein PriA; Provisional
Probab=24.88 E-value=89 Score=27.07 Aligned_cols=49 Identities=24% Similarity=0.623 Sum_probs=30.7
Q ss_pred ccccCCccCcCcccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE-ECCCCCCce
Q 037534 47 NPRCIECKAKGVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI-MCAECGGRG 104 (108)
Q Consensus 47 ~~~C~~C~G~G~~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~-~C~~C~G~G 104 (108)
...|..|.-. ..|+.|++.=.. +...+ ...|..|+-.-.- .|+.|.+.-
T Consensus 383 ~l~C~~Cg~~--~~C~~C~~~L~~----h~~~~---~l~Ch~CG~~~~p~~Cp~Cgs~~ 432 (665)
T PRK14873 383 SLACARCRTP--ARCRHCTGPLGL----PSAGG---TPRCRWCGRAAPDWRCPRCGSDR 432 (665)
T ss_pred eeEhhhCcCe--eECCCCCCceeE----ecCCC---eeECCCCcCCCcCccCCCCcCCc
Confidence 5789888544 689999975332 21111 5679999654311 199998753
No 140
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=24.54 E-value=54 Score=16.72 Aligned_cols=17 Identities=35% Similarity=1.011 Sum_probs=7.6
Q ss_pred eCCCCCCcceEECCCCC
Q 037534 85 PCLGCGGTGNIMCAECG 101 (108)
Q Consensus 85 ~C~~C~G~G~~~C~~C~ 101 (108)
.|..|...++..|+.|.
T Consensus 4 ~C~vC~~~~kY~Cp~C~ 20 (30)
T PF04438_consen 4 LCSVCGNPAKYRCPRCG 20 (30)
T ss_dssp EETSSSSEESEE-TTT-
T ss_pred CCccCcCCCEEECCCcC
Confidence 45555554444455553
No 141
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=24.47 E-value=51 Score=23.10 Aligned_cols=11 Identities=27% Similarity=1.029 Sum_probs=5.7
Q ss_pred CcCcccCCCCc
Q 037534 55 AKGVVLCATCS 65 (108)
Q Consensus 55 G~G~~~C~~C~ 65 (108)
|.|...|..|+
T Consensus 109 g~G~l~C~~Cg 119 (146)
T PF07295_consen 109 GPGTLVCENCG 119 (146)
T ss_pred cCceEecccCC
Confidence 44445555554
No 142
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=24.43 E-value=61 Score=17.78 Aligned_cols=9 Identities=22% Similarity=1.006 Sum_probs=5.7
Q ss_pred ccCCCCcCC
Q 037534 59 VLCATCSGS 67 (108)
Q Consensus 59 ~~C~~C~G~ 67 (108)
..||.|+.+
T Consensus 19 ~~CP~Cg~~ 27 (46)
T PF12760_consen 19 FVCPHCGST 27 (46)
T ss_pred CCCCCCCCe
Confidence 456677665
No 143
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=24.20 E-value=51 Score=30.92 Aligned_cols=18 Identities=33% Similarity=1.055 Sum_probs=9.0
Q ss_pred eCCCCCCcceE--ECCCCCC
Q 037534 85 PCLGCGGTGNI--MCAECGG 102 (108)
Q Consensus 85 ~C~~C~G~G~~--~C~~C~G 102 (108)
.|+.|+..-.. .|+.|..
T Consensus 681 fCP~CGs~te~vy~CPsCGa 700 (1337)
T PRK14714 681 RCPDCGTHTEPVYVCPDCGA 700 (1337)
T ss_pred cCcccCCcCCCceeCccCCC
Confidence 56666555322 2666643
No 144
>PRK04023 DNA polymerase II large subunit; Validated
Probab=23.95 E-value=54 Score=30.15 Aligned_cols=18 Identities=28% Similarity=0.707 Sum_probs=8.4
Q ss_pred EeeCCCCCCcceEE--CCCC
Q 037534 83 KVPCLGCGGTGNIM--CAEC 100 (108)
Q Consensus 83 ~~~C~~C~G~G~~~--C~~C 100 (108)
...||.|+..-..+ |+.|
T Consensus 638 ~frCP~CG~~Te~i~fCP~C 657 (1121)
T PRK04023 638 YRRCPFCGTHTEPVYRCPRC 657 (1121)
T ss_pred cccCCCCCCCCCcceeCccc
Confidence 34566665442222 5555
No 145
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=23.71 E-value=1.7e+02 Score=17.81 Aligned_cols=31 Identities=16% Similarity=0.440 Sum_probs=16.5
Q ss_pred ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcc
Q 037534 59 VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTG 93 (108)
Q Consensus 59 ~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G 93 (108)
..||.|...=.. ...++......|..|...|
T Consensus 7 KPCPFCG~~~~~----v~~~~g~~~v~C~~CgA~~ 37 (64)
T PRK09710 7 KPCPFCGCPSVT----VKAISGYYRAKCNGCESRT 37 (64)
T ss_pred cCCCCCCCceeE----EEecCceEEEEcCCCCcCc
Confidence 467777665543 2222323356677776554
No 146
>PRK05580 primosome assembly protein PriA; Validated
Probab=23.62 E-value=49 Score=28.49 Aligned_cols=48 Identities=29% Similarity=0.584 Sum_probs=29.5
Q ss_pred ccccCCccCcCcccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE--CCCCCCc
Q 037534 47 NPRCIECKAKGVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM--CAECGGR 103 (108)
Q Consensus 47 ~~~C~~C~G~G~~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~--C~~C~G~ 103 (108)
...|..|.-. ..|+.|.+.=.. +...+ ...|..|+-+-... |+.|.+.
T Consensus 381 ~~~C~~Cg~~--~~C~~C~~~l~~----h~~~~---~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 381 FLLCRDCGWV--AECPHCDASLTL----HRFQR---RLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred ceEhhhCcCc--cCCCCCCCceeE----ECCCC---eEECCCCcCCCCCCCCCCCCcCC
Confidence 4678888644 679999873221 11111 56788886554333 8888765
No 147
>PRK05580 primosome assembly protein PriA; Validated
Probab=23.54 E-value=1.1e+02 Score=26.35 Aligned_cols=34 Identities=26% Similarity=0.565 Sum_probs=20.0
Q ss_pred ccccCCccCcC-------cccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCc
Q 037534 47 NPRCIECKAKG-------VVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGT 92 (108)
Q Consensus 47 ~~~C~~C~G~G-------~~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~ 92 (108)
...|+.|++.= ...|..|+-+-.. ...||.|++.
T Consensus 390 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~------------~~~Cp~Cg~~ 430 (679)
T PRK05580 390 VAECPHCDASLTLHRFQRRLRCHHCGYQEPI------------PKACPECGST 430 (679)
T ss_pred ccCCCCCCCceeEECCCCeEECCCCcCCCCC------------CCCCCCCcCC
Confidence 66777777531 1467777654432 4567777654
No 148
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=23.24 E-value=44 Score=22.69 Aligned_cols=19 Identities=32% Similarity=1.010 Sum_probs=11.5
Q ss_pred EeeCCCCCCcceEE-----CCCCC
Q 037534 83 KVPCLGCGGTGNIM-----CAECG 101 (108)
Q Consensus 83 ~~~C~~C~G~G~~~-----C~~C~ 101 (108)
+..||.|+-.=++. |..|+
T Consensus 69 ~V~CP~C~K~TKmLGr~D~CM~C~ 92 (114)
T PF11023_consen 69 QVECPNCGKQTKMLGRVDACMHCK 92 (114)
T ss_pred eeECCCCCChHhhhchhhccCcCC
Confidence 66677775544333 77775
No 149
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=22.99 E-value=55 Score=21.74 Aligned_cols=23 Identities=26% Similarity=0.629 Sum_probs=14.0
Q ss_pred ccccCCccCcCc-----ccCCCCcCCce
Q 037534 47 NPRCIECKAKGV-----VLCATCSGSGL 69 (108)
Q Consensus 47 ~~~C~~C~G~G~-----~~C~~C~G~G~ 69 (108)
...|..|.-.-. ..||.|++...
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (115)
T TIGR00100 70 ECECEDCSEEVSPEIDLYRCPKCHGIML 97 (115)
T ss_pred EEEcccCCCEEecCCcCccCcCCcCCCc
Confidence 456777753322 45888877664
No 150
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=22.74 E-value=38 Score=25.56 Aligned_cols=8 Identities=38% Similarity=0.895 Sum_probs=5.7
Q ss_pred ccccCCcc
Q 037534 47 NPRCIECK 54 (108)
Q Consensus 47 ~~~C~~C~ 54 (108)
...||+|.
T Consensus 217 ~~lCp~C~ 224 (264)
T cd01129 217 RKLCPHCK 224 (264)
T ss_pred cccChhhC
Confidence 67777775
No 151
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=22.53 E-value=73 Score=23.48 Aligned_cols=44 Identities=32% Similarity=0.628 Sum_probs=24.8
Q ss_pred ccccCCccCcCc--ccCC-----CCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534 47 NPRCIECKAKGV--VLCA-----TCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM 96 (108)
Q Consensus 47 ~~~C~~C~G~G~--~~C~-----~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~ 96 (108)
...|..|...|- ..|| .|.=.|.+. +.- .+...|..|+-.|.+.
T Consensus 60 ~~~C~nCg~~GH~~~DCP~~iC~~C~~~~H~s--~~C----~~~~~C~~Cg~~GH~~ 110 (190)
T COG5082 60 NPVCFNCGQNGHLRRDCPHSICYNCSWDGHRS--NHC----PKPKKCYNCGETGHLS 110 (190)
T ss_pred ccccchhcccCcccccCChhHhhhcCCCCccc--ccC----CcccccccccccCccc
Confidence 678888876665 4455 774344431 000 0135677777777765
No 152
>PHA02998 RNA polymerase subunit; Provisional
Probab=22.49 E-value=1.7e+02 Score=21.56 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=17.6
Q ss_pred ccCCCCcCCceEeeeEEeec---CcEEEeeCCCCC
Q 037534 59 VLCATCSGSGLYVDSILESQ---GVIVKVPCLGCG 90 (108)
Q Consensus 59 ~~C~~C~G~G~~~~~~~~~~---G~~~~~~C~~C~ 90 (108)
..|+.|++.....-.++++. ++..-..|..|+
T Consensus 144 v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG 178 (195)
T PHA02998 144 TPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCK 178 (195)
T ss_pred CCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCC
Confidence 57888887776421123332 223356677774
No 153
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=22.00 E-value=86 Score=18.57 Aligned_cols=12 Identities=25% Similarity=0.761 Sum_probs=7.6
Q ss_pred ccCCCCcCCceE
Q 037534 59 VLCATCSGSGLY 70 (108)
Q Consensus 59 ~~C~~C~G~G~~ 70 (108)
..||.|++.-++
T Consensus 5 i~CP~CgnKTR~ 16 (55)
T PF14205_consen 5 ILCPICGNKTRL 16 (55)
T ss_pred EECCCCCCccce
Confidence 467777766553
No 154
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=21.91 E-value=1.9e+02 Score=17.38 Aligned_cols=8 Identities=50% Similarity=1.356 Sum_probs=5.8
Q ss_pred EeeCCCCC
Q 037534 83 KVPCLGCG 90 (108)
Q Consensus 83 ~~~C~~C~ 90 (108)
..+|+.|+
T Consensus 36 ~v~C~~CG 43 (64)
T PF09855_consen 36 TVSCTNCG 43 (64)
T ss_pred EEECCCCC
Confidence 66788884
No 155
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=21.47 E-value=1.4e+02 Score=16.86 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=7.3
Q ss_pred ccCCCCcCCceE
Q 037534 59 VLCATCSGSGLY 70 (108)
Q Consensus 59 ~~C~~C~G~G~~ 70 (108)
..||-| |...+
T Consensus 4 kPCPFC-G~~~~ 14 (61)
T PF14354_consen 4 KPCPFC-GSADV 14 (61)
T ss_pred cCCCCC-CCcce
Confidence 468888 66654
No 156
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=21.46 E-value=1.1e+02 Score=18.26 Aligned_cols=10 Identities=50% Similarity=1.205 Sum_probs=4.8
Q ss_pred EEEeeCCCCC
Q 037534 81 IVKVPCLGCG 90 (108)
Q Consensus 81 ~~~~~C~~C~ 90 (108)
|....|+.|.
T Consensus 9 F~~VkCp~C~ 18 (59)
T PRK00415 9 FLKVKCPDCG 18 (59)
T ss_pred EEEEECCCCC
Confidence 3344555553
No 157
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=21.05 E-value=48 Score=17.45 Aligned_cols=15 Identities=33% Similarity=0.981 Sum_probs=7.7
Q ss_pred eCCCCCCcceEE--CCC
Q 037534 85 PCLGCGGTGNIM--CAE 99 (108)
Q Consensus 85 ~C~~C~G~G~~~--C~~ 99 (108)
.|..|+..|..+ |+.
T Consensus 10 ~C~~C~~~GH~i~dCP~ 26 (32)
T PF13696_consen 10 VCHRCGQKGHWIQDCPT 26 (32)
T ss_pred EeecCCCCCccHhHCCC
Confidence 455555555544 544
No 158
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=20.93 E-value=67 Score=16.93 Aligned_cols=27 Identities=26% Similarity=0.620 Sum_probs=10.4
Q ss_pred cCCCCcCCceEeeeEEeecCc-EEEeeCCCCC
Q 037534 60 LCATCSGSGLYVDSILESQGV-IVKVPCLGCG 90 (108)
Q Consensus 60 ~C~~C~G~G~~~~~~~~~~G~-~~~~~C~~C~ 90 (108)
-|+.|.+.=. ..++.|- .....|+.|+
T Consensus 2 fC~~CG~~l~----~~ip~gd~r~R~vC~~Cg 29 (34)
T PF14803_consen 2 FCPQCGGPLE----RRIPEGDDRERLVCPACG 29 (34)
T ss_dssp B-TTT--B-E----EE--TT-SS-EEEETTTT
T ss_pred ccccccChhh----hhcCCCCCccceECCCCC
Confidence 3777776522 2333333 2266777773
No 159
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.85 E-value=42 Score=29.21 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=18.0
Q ss_pred HhhhCCCCCCCCCceEEEEEecchhhccCc
Q 037534 17 ESLFCYDKPIPEERIEKSISVSLSEKVIGD 46 (108)
Q Consensus 17 ~~~f~~~~~~rg~di~~~l~i~l~e~~~G~ 46 (108)
++||||+..-+ .++-.+.|+|+|+|.
T Consensus 1 mSFFGf~n~G~----~~e~~~DFee~y~g~ 26 (728)
T KOG4592|consen 1 MSFFGFDNDGR----IVEAEYDFEEAYNGD 26 (728)
T ss_pred CCcccccCCCc----eeecCccHHhhhcch
Confidence 37899884332 344556799999997
No 160
>PRK11712 ribonuclease G; Provisional
Probab=20.19 E-value=46 Score=27.78 Aligned_cols=12 Identities=42% Similarity=0.836 Sum_probs=8.9
Q ss_pred ccCCCCcCCceE
Q 037534 59 VLCATCSGSGLY 70 (108)
Q Consensus 59 ~~C~~C~G~G~~ 70 (108)
..||.|+|+|.+
T Consensus 403 ~~Cp~C~G~G~v 414 (489)
T PRK11712 403 GECPTCHGRGTV 414 (489)
T ss_pred CCCCCCCCCCCc
Confidence 467788888875
No 161
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=20.04 E-value=55 Score=29.30 Aligned_cols=19 Identities=5% Similarity=-0.195 Sum_probs=17.2
Q ss_pred CCceEEEEEecchhhccCc
Q 037534 28 EERIEKSISVSLSEKVIGD 46 (108)
Q Consensus 28 g~di~~~l~i~l~e~~~G~ 46 (108)
.-||.+.|.|+|+++|+|+
T Consensus 656 ~~dI~y~l~vtLEeLY~G~ 674 (871)
T TIGR03835 656 NVNLVYEEEVPQILFFNNQ 674 (871)
T ss_pred ccceEEecccCHHHHhCCC
Confidence 4588899999999999999
No 162
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=20.02 E-value=58 Score=29.15 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=20.3
Q ss_pred CCCCCceEEEEEecchhhccCc
Q 037534 25 PIPEERIEKSISVSLSEKVIGD 46 (108)
Q Consensus 25 ~~rg~di~~~l~i~l~e~~~G~ 46 (108)
.++|.|+.+.+.|+|.+|+.|.
T Consensus 742 rRdGdDL~~~v~ISL~EALLGg 763 (871)
T TIGR03835 742 QIKNDGLHVAALVDPLVAYNGG 763 (871)
T ss_pred EEECCeEEEEEecCHHHHhcCC
Confidence 3579999999999999999998
Done!