Query 037534
Match_columns 108
No_of_seqs 171 out of 1150
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 22:55:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctt_A DNAJ homolog subfamily 99.8 8.4E-20 2.9E-24 120.0 5.9 76 28-107 1-94 (104)
2 1nlt_A Protein YDJ1, mitochond 99.7 1.4E-17 4.6E-22 124.2 7.3 82 24-107 7-109 (248)
3 1exk_A DNAJ protein; extended 99.4 8.6E-13 2.9E-17 82.1 5.1 57 47-107 11-77 (79)
4 1exk_A DNAJ protein; extended 98.2 8E-07 2.8E-11 54.7 2.4 38 47-95 28-76 (79)
5 2ctt_A DNAJ homolog subfamily 98.0 2.4E-06 8.1E-11 55.4 2.9 39 47-96 45-94 (104)
6 3lcz_A YCZA, inhibitor of trap 97.8 1.2E-05 4.2E-10 46.7 2.4 25 83-107 9-36 (53)
7 2bx9_A Anti-trap, AT, tryptoph 97.5 5.9E-05 2E-09 43.7 2.6 23 48-70 10-35 (53)
8 3lcz_A YCZA, inhibitor of trap 97.5 6.4E-05 2.2E-09 43.6 2.6 23 48-70 10-35 (53)
9 2bx9_A Anti-trap, AT, tryptoph 97.3 0.00014 4.8E-09 42.1 2.7 26 59-95 10-35 (53)
10 1nlt_A Protein YDJ1, mitochond 97.2 0.00013 4.6E-09 53.8 2.1 41 47-96 54-109 (248)
11 3agx_A DNAJ homolog subfamily 96.6 0.00055 1.9E-08 48.2 1.0 19 28-46 2-20 (181)
12 3lz8_A Putative chaperone DNAJ 96.5 0.001 3.5E-08 51.0 2.3 36 11-46 116-158 (329)
13 3pmq_A Decaheme cytochrome C M 94.9 0.0031 1.1E-07 52.6 -0.9 63 32-94 168-257 (669)
14 2q2g_A HSP40 protein, heat sho 91.1 0.075 2.6E-06 37.1 1.4 20 27-46 2-21 (180)
15 1c3g_A Heat shock protein 40; 86.2 0.29 9.8E-06 33.7 1.6 18 29-46 1-18 (170)
16 3i38_A Putative chaperone DNAJ 78.9 0.58 2E-05 30.0 0.8 22 25-46 8-29 (109)
17 1xao_A YDJ1, mitochondrial pro 73.9 0.91 3.1E-05 29.5 0.7 22 25-46 3-24 (121)
18 1pft_A TFIIB, PFTFIIBN; N-term 60.3 4.6 0.00016 21.9 1.7 9 59-67 6-14 (50)
19 2q2g_A HSP40 protein, heat sho 59.2 2.6 9E-05 29.0 0.7 22 25-46 89-110 (180)
20 3agx_A DNAJ homolog subfamily 59.0 2.7 9.1E-05 29.1 0.7 21 26-46 90-110 (181)
21 1c3g_A Heat shock protein 40; 58.8 2.3 7.9E-05 29.0 0.3 21 26-46 84-104 (170)
22 3nyb_B Protein AIR2; polya RNA 54.5 6.4 0.00022 24.1 1.8 50 47-99 5-64 (83)
23 2jrp_A Putative cytoplasmic pr 46.0 40 0.0014 20.5 4.5 19 48-66 3-26 (81)
24 2jne_A Hypothetical protein YF 41.1 26 0.0009 22.3 3.1 44 47-102 32-89 (101)
25 1dl6_A Transcription factor II 39.9 13 0.00046 20.9 1.5 8 60-67 13-20 (58)
26 3lz8_A Putative chaperone DNAJ 39.0 8.8 0.0003 29.0 0.8 21 26-46 229-249 (329)
27 3j20_Y 30S ribosomal protein S 36.7 19 0.00064 19.8 1.7 7 83-89 37-43 (50)
28 2hf1_A Tetraacyldisaccharide-1 30.1 30 0.001 20.2 2.0 8 93-100 25-32 (68)
29 1qyp_A RNA polymerase II; tran 29.8 70 0.0024 17.4 3.5 11 59-69 16-26 (57)
30 2jny_A Uncharacterized BCR; st 29.5 31 0.001 20.2 1.9 8 59-66 11-18 (67)
31 2jr6_A UPF0434 protein NMA0874 29.0 30 0.001 20.2 1.9 8 59-66 9-16 (68)
32 3k1f_M Transcription initiatio 28.5 28 0.00094 24.7 1.9 7 60-66 23-29 (197)
33 3cw2_K Translation initiation 28.0 31 0.0011 23.0 2.0 23 47-69 103-135 (139)
34 2pk7_A Uncharacterized protein 26.9 35 0.0012 20.0 1.9 7 60-66 10-16 (69)
35 4bbr_M Transcription initiatio 26.1 29 0.00099 26.2 1.7 8 93-100 41-48 (345)
36 2vf7_A UVRA2, excinuclease ABC 26.0 35 0.0012 29.1 2.4 30 60-93 640-671 (842)
37 2js4_A UPF0434 protein BB2007; 25.8 39 0.0013 19.8 1.9 8 59-66 9-16 (70)
38 2r6f_A Excinuclease ABC subuni 25.6 41 0.0014 29.3 2.7 30 60-93 755-786 (972)
39 2kpi_A Uncharacterized protein 23.2 46 0.0016 18.6 1.8 7 60-66 12-18 (56)
40 1k81_A EIF-2-beta, probable tr 22.3 49 0.0017 16.8 1.7 11 60-70 2-12 (36)
41 3j21_g 50S ribosomal protein L 22.1 44 0.0015 18.5 1.6 21 47-67 14-37 (51)
42 2vf7_A UVRA2, excinuclease ABC 21.7 46 0.0016 28.3 2.3 21 85-105 640-672 (842)
43 1tfi_A Transcriptional elongat 20.1 1.2E+02 0.004 16.4 3.4 32 59-90 10-44 (50)
No 1
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.4e-20 Score=120.02 Aligned_cols=76 Identities=29% Similarity=0.684 Sum_probs=67.4
Q ss_pred CCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeeeEEeecCcEE-EeeCCCCCCc
Q 037534 28 EERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDSILESQGVIV-KVPCLGCGGT 92 (108)
Q Consensus 28 g~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C~G~ 92 (108)
|.|+.++|+|+|+|||+|. .+.|+.|+|+|. ..|+.|+|+|++ ...+|+|+ +.+|+.|.|+
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~----~~~~G~~~~~~~C~~C~G~ 76 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGME----TINTGPFVMRSTCRRCGGR 76 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEE----EEEETTEEEEEECSSSSSS
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEE----EEEeCCEEEEEECCcCCCc
Confidence 5789999999999999998 689999999995 689999999986 33347766 8899999999
Q ss_pred ceEE---CCCCCCceEeC
Q 037534 93 GNIM---CAECGGRGHCS 107 (108)
Q Consensus 93 G~~~---C~~C~G~G~~~ 107 (108)
|+++ |+.|+|.|++.
T Consensus 77 G~~i~~~C~~C~G~G~v~ 94 (104)
T 2ctt_A 77 GSIIISPCVVCRGAGQAK 94 (104)
T ss_dssp SEECSSCCSSSSSCSEEC
T ss_pred ceECCCcCCCCCCeeEEE
Confidence 9997 99999999875
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.71 E-value=1.4e-17 Score=124.16 Aligned_cols=82 Identities=33% Similarity=0.678 Sum_probs=69.1
Q ss_pred CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc-----ccCCCCcCCceEeeeEEeecCc-E-E-EeeCC
Q 037534 24 KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV-----VLCATCSGSGLYVDSILESQGV-I-V-KVPCL 87 (108)
Q Consensus 24 ~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~-----~~C~~C~G~G~~~~~~~~~~G~-~-~-~~~C~ 87 (108)
++++|+|+.++|.|+|+|+|+|+ .+.|+.|+|+|+ .+|+.|+|+|+++ .....|+ + + +.+|+
T Consensus 7 ~~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~--~~~~~g~~~~~~~~~C~ 84 (248)
T 1nlt_A 7 GPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKF--VTRQMGPMIQRFQTECD 84 (248)
T ss_dssp -CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEE--EEEESSSEEEEEECSCT
T ss_pred CCCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEE--EEEecCceEEEEEEcCC
Confidence 45689999999999999999998 679999999996 7899999999873 2233354 3 2 88999
Q ss_pred CCCCcceEE-----CCCCCCceEeC
Q 037534 88 GCGGTGNIM-----CAECGGRGHCS 107 (108)
Q Consensus 88 ~C~G~G~~~-----C~~C~G~G~~~ 107 (108)
.|+|+|+++ |+.|+|+|++.
T Consensus 85 ~C~G~G~~i~~~~~C~~C~G~g~~~ 109 (248)
T 1nlt_A 85 VCHGTGDIIDPKDRCKSCNGKKVEN 109 (248)
T ss_dssp TCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred CCCCcCEEeccCCCCcccCCCceEe
Confidence 999999876 99999999864
No 3
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.35 E-value=8.6e-13 Score=82.05 Aligned_cols=57 Identities=33% Similarity=0.839 Sum_probs=49.1
Q ss_pred ccccCCccCcCc------ccCCCCcCCceEeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 47 NPRCIECKAKGV------VLCATCSGSGLYVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 47 ~~~C~~C~G~G~------~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
.+.|+.|+|+|. ..|+.|+|+|.++ . .+|+++ +.+|+.|.|+|+++ |+.|+|.|++.
T Consensus 11 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~---~-~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~ 77 (79)
T 1exk_A 11 LEECDVCHGSGAKPGTQPQTCPTCHGSGQVQ---M-RQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVE 77 (79)
T ss_dssp EEECGGGTTTSBCSSSCCEECTTTTTSSEEE---E-EETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEE
T ss_pred ceECCCCcccccCCCccCCCCCCCcCeEEEE---E-EcCCCEEeeECcCCCCccEECCCcCCCCCCeEEEe
Confidence 578999999996 5899999999962 2 338876 78999999999996 99999999874
No 4
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.16 E-value=8e-07 Score=54.65 Aligned_cols=38 Identities=34% Similarity=0.896 Sum_probs=30.3
Q ss_pred ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
...|+.|+|+|. ..|+.|+|+|.++ ..+|+.|.|.|.+
T Consensus 28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~G~~ 76 (79)
T 1exk_A 28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI-----------KDPCNKCHGHGRV 76 (79)
T ss_dssp CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-----------SSBCGGGTTSSEE
T ss_pred CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC-----------CCcCCCCCCeEEE
Confidence 368999999885 2799999999863 5679999998876
No 5
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=2.4e-06 Score=55.39 Aligned_cols=39 Identities=31% Similarity=0.811 Sum_probs=33.8
Q ss_pred ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534 47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM 96 (108)
Q Consensus 47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~ 96 (108)
...|+.|+|+|. ..|+.|+|+|.++ ..+|+.|.|.|.+.
T Consensus 45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i-----------~~~C~~C~G~G~v~ 94 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII-----------ISPCVVCRGAGQAK 94 (104)
T ss_dssp CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC-----------SSCCSSSSSCSEEC
T ss_pred CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC-----------CCcCCCCCCeeEEE
Confidence 479999999995 4899999999974 56899999999863
No 6
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.77 E-value=1.2e-05 Score=46.66 Aligned_cols=25 Identities=32% Similarity=0.852 Sum_probs=17.7
Q ss_pred EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534 83 KVPCLGCGGTGNIM---CAECGGRGHCS 107 (108)
Q Consensus 83 ~~~C~~C~G~G~~~---C~~C~G~G~~~ 107 (108)
+.+|+.|.|+|+++ |+.|+|+|++.
T Consensus 9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 9 ETTCPNCNGSGREEPEPCPKCLGKGVIL 36 (53)
T ss_dssp EEECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred eccCcCCcccccCCCCcCCCCCCcEEEE
Confidence 56777777777765 77777777653
No 7
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.50 E-value=5.9e-05 Score=43.73 Aligned_cols=23 Identities=35% Similarity=0.902 Sum_probs=14.7
Q ss_pred cccCCccCcCc---ccCCCCcCCceE
Q 037534 48 PRCIECKAKGV---VLCATCSGSGLY 70 (108)
Q Consensus 48 ~~C~~C~G~G~---~~C~~C~G~G~~ 70 (108)
..|+.|+|+|. ..|+.|+|+|.+
T Consensus 10 ~~C~~C~GsG~~~~~~C~~C~G~G~v 35 (53)
T 2bx9_A 10 VACPKCERAGEIEGTPCPACSGKGVI 35 (53)
T ss_dssp EECTTTTTSSEETTEECTTTTTSSEE
T ss_pred ccCCCCcceeccCCCCCccCCCCccE
Confidence 45666666665 456666666664
No 8
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.48 E-value=6.4e-05 Score=43.59 Aligned_cols=23 Identities=30% Similarity=0.850 Sum_probs=15.4
Q ss_pred cccCCccCcCc---ccCCCCcCCceE
Q 037534 48 PRCIECKAKGV---VLCATCSGSGLY 70 (108)
Q Consensus 48 ~~C~~C~G~G~---~~C~~C~G~G~~ 70 (108)
.+|+.|+|+|. ..|+.|+|+|.+
T Consensus 10 ~~C~~C~GsG~~i~~~C~~C~G~G~v 35 (53)
T 3lcz_A 10 TTCPNCNGSGREEPEPCPKCLGKGVI 35 (53)
T ss_dssp EECTTTTTSCEETTEECTTTTTSSEE
T ss_pred ccCcCCcccccCCCCcCCCCCCcEEE
Confidence 46777777776 567777777764
No 9
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.31 E-value=0.00014 Score=42.10 Aligned_cols=26 Identities=38% Similarity=0.901 Sum_probs=14.8
Q ss_pred ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534 59 VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI 95 (108)
Q Consensus 59 ~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~ 95 (108)
..|+.|+|+|.++ ..+|+.|+|.|++
T Consensus 10 ~~C~~C~GsG~~~-----------~~~C~~C~G~G~v 35 (53)
T 2bx9_A 10 VACPKCERAGEIE-----------GTPCPACSGKGVI 35 (53)
T ss_dssp EECTTTTTSSEET-----------TEECTTTTTSSEE
T ss_pred ccCCCCcceeccC-----------CCCCccCCCCccE
Confidence 3566666666642 3456666666654
No 10
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=97.19 E-value=0.00013 Score=53.78 Aligned_cols=41 Identities=27% Similarity=0.674 Sum_probs=33.1
Q ss_pred ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534 47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM 96 (108)
Q Consensus 47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~ 96 (108)
...|+.|+|+|. ..|+.|+|+|.++ .. ..+|+.|.|.|.+.
T Consensus 54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i---~~------~~~C~~C~G~g~~~ 109 (248)
T 1nlt_A 54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII---DP------KDRCKSCNGKKVEN 109 (248)
T ss_dssp CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC---CT------TSBCSSSTTSCEEE
T ss_pred CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEe---cc------CCCCcccCCCceEe
Confidence 689999999994 4799999999862 10 56899999999763
No 11
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=96.57 E-value=0.00055 Score=48.24 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=14.8
Q ss_pred CCceEEEEEecchhhccCc
Q 037534 28 EERIEKSISVSLSEKVIGD 46 (108)
Q Consensus 28 g~di~~~l~i~l~e~~~G~ 46 (108)
++|+.++|.|+|+|+|+|+
T Consensus 2 ~~d~~~~l~islee~~~G~ 20 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGC 20 (181)
T ss_dssp ----CEEEEECHHHHHHCE
T ss_pred CCCEEEEEEEEHHHhcCCc
Confidence 5789999999999999998
No 12
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=96.52 E-value=0.001 Score=50.99 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=20.6
Q ss_pred cccchhHhhhCC-------CCCCCCCceEEEEEecchhhccCc
Q 037534 11 RRRSSLESLFCY-------DKPIPEERIEKSISVSLSEKVIGD 46 (108)
Q Consensus 11 ~~~~~f~~~f~~-------~~~~rg~di~~~l~i~l~e~~~G~ 46 (108)
++.++|++||+. ..+++|.|+.++|.|+|+|+|+|.
T Consensus 116 ~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G~ 158 (329)
T 3lz8_A 116 DFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQ 158 (329)
T ss_dssp ---------------------CCCCCCEEEEECCCTTGGGSCE
T ss_pred chhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhcc
Confidence 356788888863 125689999999999999999998
No 13
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=94.93 E-value=0.0031 Score=52.64 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=44.1
Q ss_pred EEEEEecchhhccCc--------ccccCCccCcCc---------ccCCCCcCCceEeee-------EEe-ecCcE-E-Ee
Q 037534 32 EKSISVSLSEKVIGD--------NPRCIECKAKGV---------VLCATCSGSGLYVDS-------ILE-SQGVI-V-KV 84 (108)
Q Consensus 32 ~~~l~i~l~e~~~G~--------~~~C~~C~G~G~---------~~C~~C~G~G~~~~~-------~~~-~~G~~-~-~~ 84 (108)
.++++|+|+|++.|. ...|..|+|+|. ..|+.|+|+...-+. ++. ..|.+ + ..
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~ 247 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS 247 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence 468889999999998 689999999875 589999999421000 000 01322 2 56
Q ss_pred eCCCCCCcce
Q 037534 85 PCLGCGGTGN 94 (108)
Q Consensus 85 ~C~~C~G~G~ 94 (108)
.|..|+..+.
T Consensus 248 ~C~~CH~~~~ 257 (669)
T 3pmq_A 248 NCQTCHADNP 257 (669)
T ss_dssp CCTTTSCCCT
T ss_pred cchhhcCCcc
Confidence 7999998875
No 14
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=91.09 E-value=0.075 Score=37.07 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=17.6
Q ss_pred CCCceEEEEEecchhhccCc
Q 037534 27 PEERIEKSISVSLSEKVIGD 46 (108)
Q Consensus 27 rg~di~~~l~i~l~e~~~G~ 46 (108)
+++|+.++|.|+|+|+|+|+
T Consensus 2 ~g~d~~~~l~islee~~~G~ 21 (180)
T 2q2g_A 2 APRSHEVPLLVTLEELYLGK 21 (180)
T ss_dssp --CEEEEEEEECHHHHHHCE
T ss_pred CCCCEEEEEEeeHHHhcCCc
Confidence 47899999999999999998
No 15
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=86.22 E-value=0.29 Score=33.72 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=16.9
Q ss_pred CceEEEEEecchhhccCc
Q 037534 29 ERIEKSISVSLSEKVIGD 46 (108)
Q Consensus 29 ~di~~~l~i~l~e~~~G~ 46 (108)
+|+.++|.|+|+|+|+|+
T Consensus 1 ~d~~~~l~islee~~~G~ 18 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGK 18 (170)
T ss_dssp CEEEEEEEECHHHHHHTC
T ss_pred CCEEEEEEeEHHHhhCCc
Confidence 489999999999999998
No 16
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=78.89 E-value=0.58 Score=30.03 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=20.1
Q ss_pred CCCCCceEEEEEecchhhccCc
Q 037534 25 PIPEERIEKSISVSLSEKVIGD 46 (108)
Q Consensus 25 ~~rg~di~~~l~i~l~e~~~G~ 46 (108)
.++|.|+.+++.|+|.||+.|.
T Consensus 8 ~R~G~DL~~~~~Isl~eAl~G~ 29 (109)
T 3i38_A 8 DIVGHNLEIVLPLAPWEAALGA 29 (109)
T ss_dssp EEETTEEEEEEEECHHHHHHCE
T ss_pred EEECCEEEEEEEcCHHHHhCCC
Confidence 3568999999999999999998
No 17
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=73.88 E-value=0.91 Score=29.53 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=20.1
Q ss_pred CCCCCceEEEEEecchhhccCc
Q 037534 25 PIPEERIEKSISVSLSEKVIGD 46 (108)
Q Consensus 25 ~~rg~di~~~l~i~l~e~~~G~ 46 (108)
.++|.|+.+++.|+|.+|+.|.
T Consensus 3 ~R~G~DL~~~~~Isl~eAllG~ 24 (121)
T 1xao_A 3 KRDGDDLVYEAEIDLLTAIAGG 24 (121)
T ss_dssp EEETTEEEEEEEEEHHHHHHCE
T ss_pred eEECCeEEEEEEcCHHHHhCCC
Confidence 3568999999999999999998
No 18
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=60.30 E-value=4.6 Score=21.88 Aligned_cols=9 Identities=22% Similarity=0.951 Sum_probs=5.3
Q ss_pred ccCCCCcCC
Q 037534 59 VLCATCSGS 67 (108)
Q Consensus 59 ~~C~~C~G~ 67 (108)
..||.|++.
T Consensus 6 ~~CP~C~~~ 14 (50)
T 1pft_A 6 KVCPACESA 14 (50)
T ss_dssp CSCTTTSCC
T ss_pred EeCcCCCCc
Confidence 457777553
No 19
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=59.18 E-value=2.6 Score=29.01 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=20.1
Q ss_pred CCCCCceEEEEEecchhhccCc
Q 037534 25 PIPEERIEKSISVSLSEKVIGD 46 (108)
Q Consensus 25 ~~rg~di~~~l~i~l~e~~~G~ 46 (108)
.++|.|+.+++.|+|.+|+.|.
T Consensus 89 ~R~G~DL~~~~~Isl~eAllG~ 110 (180)
T 2q2g_A 89 TRDDCHLIMKVTIPLVRALTGF 110 (180)
T ss_dssp EEETTEEEEEEEEEHHHHHHCE
T ss_pred EEcCCEEEEEEEcCHHHHhCCC
Confidence 3569999999999999999998
No 20
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=59.01 E-value=2.7 Score=29.05 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=19.8
Q ss_pred CCCCceEEEEEecchhhccCc
Q 037534 26 IPEERIEKSISVSLSEKVIGD 46 (108)
Q Consensus 26 ~rg~di~~~l~i~l~e~~~G~ 46 (108)
++|.|+.+++.|+|.+|+.|.
T Consensus 90 R~G~DL~~~~~Isl~eAllG~ 110 (181)
T 3agx_A 90 RDGSDVIYPARISLREALCGC 110 (181)
T ss_dssp EETTEEEEEEEEEHHHHHHCE
T ss_pred eeCCcEEEEEEcCHHHHhCCC
Confidence 569999999999999999998
No 21
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=58.85 E-value=2.3 Score=29.04 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=19.7
Q ss_pred CCCCceEEEEEecchhhccCc
Q 037534 26 IPEERIEKSISVSLSEKVIGD 46 (108)
Q Consensus 26 ~rg~di~~~l~i~l~e~~~G~ 46 (108)
++|.|+.+++.|+|.+|+.|.
T Consensus 84 R~G~DL~~~~~Isl~eAllG~ 104 (170)
T 1c3g_A 84 RDGDDLIYTLPLSFKESLLGF 104 (170)
T ss_dssp EETTEEEEEECCBHHHHHHCE
T ss_pred EeCCcEeEEEEcCHHHHhCCC
Confidence 569999999999999999998
No 22
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=54.52 E-value=6.4 Score=24.06 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=26.0
Q ss_pred ccccCCccCcCc--------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE--CCC
Q 037534 47 NPRCIECKAKGV--------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM--CAE 99 (108)
Q Consensus 47 ~~~C~~C~G~G~--------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~--C~~ 99 (108)
.+.|..|...|- .+|..|...|.+. ..-.-+.....|..|...|.+- |+.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~---~~c~~p~~~~~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSIWRAYILVDDNEKA---KPKVLPFHTIYCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGGTCCCCBC----------------CCCBCSSSSCBSSCGGGCSS
T ss_pred cCCCCCCCCCCCccccCCCcccccccccCCccc---ccccCCCCCCeecccCCCCcCcccCCc
Confidence 467888887775 3567777777641 1000111256799999999875 764
No 23
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=46.05 E-value=40 Score=20.54 Aligned_cols=19 Identities=26% Similarity=0.683 Sum_probs=11.2
Q ss_pred cccCCccCc-----CcccCCCCcC
Q 037534 48 PRCIECKAK-----GVVLCATCSG 66 (108)
Q Consensus 48 ~~C~~C~G~-----G~~~C~~C~G 66 (108)
..||.|+.. +...|..|+.
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~ 26 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAK 26 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCC
T ss_pred CCCCCCCCccccCCCceECccccc
Confidence 467777632 2245777765
No 24
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=41.06 E-value=26 Score=22.30 Aligned_cols=44 Identities=20% Similarity=0.504 Sum_probs=27.8
Q ss_pred ccccCCccCc----C-cccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE---------CCCCCC
Q 037534 47 NPRCIECKAK----G-VVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM---------CAECGG 102 (108)
Q Consensus 47 ~~~C~~C~G~----G-~~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~---------C~~C~G 102 (108)
...||.|+-. | ...|..|+..=.+ ...||.|+-.=++. |..|+|
T Consensus 32 ~~~CP~Cq~eL~~~g~~~hC~~C~~~f~~------------~a~CPdC~q~LevLkACGAvdYFC~~chg 89 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNGHARCRSCGEFIEM------------KALCPDCHQPLQVLKACGAVDYFCQHGHG 89 (101)
T ss_dssp CCBCSSSCSBEEEETTEEEETTTCCEEEE------------EEECTTTCSBCEEEEETTEEEEEETTTTE
T ss_pred cccCccCCCcceecCCEEECccccchhhc------------cccCcchhhHHHHHHHhcCcchhhccCCc
Confidence 4678888742 1 1458888763221 67899997664443 787764
No 25
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=39.87 E-value=13 Score=20.93 Aligned_cols=8 Identities=13% Similarity=0.472 Sum_probs=4.3
Q ss_pred cCCCCcCC
Q 037534 60 LCATCSGS 67 (108)
Q Consensus 60 ~C~~C~G~ 67 (108)
.||.|.+.
T Consensus 13 ~Cp~C~~~ 20 (58)
T 1dl6_A 13 TCPNHPDA 20 (58)
T ss_dssp SBTTBSSS
T ss_pred cCcCCCCC
Confidence 46666553
No 26
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=38.99 E-value=8.8 Score=29.01 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.7
Q ss_pred CCCCceEEEEEecchhhccCc
Q 037534 26 IPEERIEKSISVSLSEKVIGD 46 (108)
Q Consensus 26 ~rg~di~~~l~i~l~e~~~G~ 46 (108)
++|.|+.+++.|+|.||+.|.
T Consensus 229 R~G~DL~~~~~Isl~eAllG~ 249 (329)
T 3lz8_A 229 IVGHNLEIVLPLAPWEAALGA 249 (329)
T ss_dssp EETTEEEEEEEECHHHHHHCE
T ss_pred EcCCcEEEEEECCHHHHcCCC
Confidence 568999999999999999998
No 27
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.73 E-value=19 Score=19.82 Aligned_cols=7 Identities=29% Similarity=0.852 Sum_probs=3.2
Q ss_pred EeeCCCC
Q 037534 83 KVPCLGC 89 (108)
Q Consensus 83 ~~~C~~C 89 (108)
...|+.|
T Consensus 37 R~~C~kC 43 (50)
T 3j20_Y 37 RWACGKC 43 (50)
T ss_dssp EEECSSS
T ss_pred eEECCCC
Confidence 3345544
No 28
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=30.08 E-value=30 Score=20.25 Aligned_cols=8 Identities=13% Similarity=0.559 Sum_probs=4.0
Q ss_pred ceEECCCC
Q 037534 93 GNIMCAEC 100 (108)
Q Consensus 93 G~~~C~~C 100 (108)
|..+|+.|
T Consensus 25 ~~LiC~~c 32 (68)
T 2hf1_A 25 DELICKGD 32 (68)
T ss_dssp TEEEETTT
T ss_pred CEEEcCCC
Confidence 44445555
No 29
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=29.83 E-value=70 Score=17.43 Aligned_cols=11 Identities=18% Similarity=0.733 Sum_probs=7.0
Q ss_pred ccCCCCcCCce
Q 037534 59 VLCATCSGSGL 69 (108)
Q Consensus 59 ~~C~~C~G~G~ 69 (108)
..|+.|+..-.
T Consensus 16 ~~Cp~Cg~~~~ 26 (57)
T 1qyp_A 16 ITCPKCGNDTA 26 (57)
T ss_dssp CCCTTTCCSEE
T ss_pred eECCCCCCCEE
Confidence 46777777444
No 30
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=29.50 E-value=31 Score=20.17 Aligned_cols=8 Identities=25% Similarity=0.667 Sum_probs=4.5
Q ss_pred ccCCCCcC
Q 037534 59 VLCATCSG 66 (108)
Q Consensus 59 ~~C~~C~G 66 (108)
..||.|+|
T Consensus 11 L~CP~ck~ 18 (67)
T 2jny_A 11 LACPKDKG 18 (67)
T ss_dssp CBCTTTCC
T ss_pred hCCCCCCC
Confidence 35666665
No 31
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.97 E-value=30 Score=20.19 Aligned_cols=8 Identities=25% Similarity=0.899 Sum_probs=4.4
Q ss_pred ccCCCCcC
Q 037534 59 VLCATCSG 66 (108)
Q Consensus 59 ~~C~~C~G 66 (108)
..||.|+|
T Consensus 9 L~CP~ck~ 16 (68)
T 2jr6_A 9 LVCPVTKG 16 (68)
T ss_dssp CBCSSSCC
T ss_pred eECCCCCC
Confidence 35666664
No 32
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=28.54 E-value=28 Score=24.68 Aligned_cols=7 Identities=29% Similarity=0.890 Sum_probs=3.9
Q ss_pred cCCCCcC
Q 037534 60 LCATCSG 66 (108)
Q Consensus 60 ~C~~C~G 66 (108)
.|+.|.+
T Consensus 23 ~CPECGs 29 (197)
T 3k1f_M 23 TCPECKV 29 (197)
T ss_dssp CCTTTCC
T ss_pred ECcCCCC
Confidence 4555555
No 33
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=27.97 E-value=31 Score=23.03 Aligned_cols=23 Identities=22% Similarity=0.661 Sum_probs=12.2
Q ss_pred ccccCCccCcCc----------ccCCCCcCCce
Q 037534 47 NPRCIECKAKGV----------VLCATCSGSGL 69 (108)
Q Consensus 47 ~~~C~~C~G~G~----------~~C~~C~G~G~ 69 (108)
.+.|+.|+-... ..|.+|+.+..
T Consensus 103 yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~ 135 (139)
T 3cw2_K 103 YVECSTCKSLDTILKKEKKSWYIVCLACGAQTP 135 (139)
T ss_dssp CSSCCSSSSSCCCSCSSCSTTTSSCCC------
T ss_pred eeECCCCCCcCcEEEEeCCeEEEEecCCCCCCc
Confidence 688888876654 46666665544
No 34
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=26.91 E-value=35 Score=19.98 Aligned_cols=7 Identities=43% Similarity=1.341 Sum_probs=4.1
Q ss_pred cCCCCcC
Q 037534 60 LCATCSG 66 (108)
Q Consensus 60 ~C~~C~G 66 (108)
.||.|+|
T Consensus 10 ~CP~ck~ 16 (69)
T 2pk7_A 10 ACPICKG 16 (69)
T ss_dssp CCTTTCC
T ss_pred eCCCCCC
Confidence 4666664
No 35
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=26.06 E-value=29 Score=26.18 Aligned_cols=8 Identities=50% Similarity=1.502 Sum_probs=3.8
Q ss_pred ceEECCCC
Q 037534 93 GNIMCAEC 100 (108)
Q Consensus 93 G~~~C~~C 100 (108)
|.++|..|
T Consensus 41 G~~vC~~C 48 (345)
T 4bbr_M 41 GDVVCALC 48 (345)
T ss_dssp TEEEETTT
T ss_pred CcEEeCCC
Confidence 44445555
No 36
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=26.00 E-value=35 Score=29.06 Aligned_cols=30 Identities=33% Similarity=0.640 Sum_probs=17.6
Q ss_pred cCCCCcCCceEeeeEEeecCc--EEEeeCCCCCCcc
Q 037534 60 LCATCSGSGLYVDSILESQGV--IVKVPCLGCGGTG 93 (108)
Q Consensus 60 ~C~~C~G~G~~~~~~~~~~G~--~~~~~C~~C~G~G 93 (108)
.|+.|.|.|.+. ....+ -....|+.|.|+-
T Consensus 640 ~c~~c~g~G~~~----~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 640 RCEHCQGEGWVM----VELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp BCTTTTTCSEEE----ETTCSSSCEEEECTTTTTCC
T ss_pred ccccccCCCccc----hhhhcCCccceecccccCcc
Confidence 488888888752 11111 1256677777754
No 37
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=25.76 E-value=39 Score=19.84 Aligned_cols=8 Identities=38% Similarity=1.398 Sum_probs=4.8
Q ss_pred ccCCCCcC
Q 037534 59 VLCATCSG 66 (108)
Q Consensus 59 ~~C~~C~G 66 (108)
..||.|+|
T Consensus 9 L~CP~ck~ 16 (70)
T 2js4_A 9 LVCPVCKG 16 (70)
T ss_dssp CBCTTTCC
T ss_pred eECCCCCC
Confidence 35666665
No 38
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=25.61 E-value=41 Score=29.28 Aligned_cols=30 Identities=33% Similarity=0.742 Sum_probs=18.8
Q ss_pred cCCCCcCCceEeeeEEeecCcE--EEeeCCCCCCcc
Q 037534 60 LCATCSGSGLYVDSILESQGVI--VKVPCLGCGGTG 93 (108)
Q Consensus 60 ~C~~C~G~G~~~~~~~~~~G~~--~~~~C~~C~G~G 93 (108)
+|+.|.|.|.+. ....++ ...+|+.|.|..
T Consensus 755 rC~~C~g~G~i~----~em~fl~~v~~~ce~c~G~r 786 (972)
T 2r6f_A 755 RCEACHGDGIIK----IEMHFLPDVYVPCEVCHGKR 786 (972)
T ss_dssp BCTTTTTCSEEE----ECCSSSCCEEEECTTTTTCC
T ss_pred ccccccccccee----eehhcccccccccccccccc
Confidence 599999999862 111121 256788887763
No 39
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.22 E-value=46 Score=18.59 Aligned_cols=7 Identities=29% Similarity=1.094 Sum_probs=3.6
Q ss_pred cCCCCcC
Q 037534 60 LCATCSG 66 (108)
Q Consensus 60 ~C~~C~G 66 (108)
.||.|+|
T Consensus 12 ~CP~c~~ 18 (56)
T 2kpi_A 12 ACPACHA 18 (56)
T ss_dssp CCSSSCS
T ss_pred eCCCCCC
Confidence 4555554
No 40
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=22.34 E-value=49 Score=16.77 Aligned_cols=11 Identities=18% Similarity=0.652 Sum_probs=7.4
Q ss_pred cCCCCcCCceE
Q 037534 60 LCATCSGSGLY 70 (108)
Q Consensus 60 ~C~~C~G~G~~ 70 (108)
.|+.|+-.-..
T Consensus 2 lC~~C~~peT~ 12 (36)
T 1k81_A 2 ICRECGKPDTK 12 (36)
T ss_dssp CCSSSCSCEEE
T ss_pred CCcCCCCCCcE
Confidence 57777776664
No 41
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.07 E-value=44 Score=18.52 Aligned_cols=21 Identities=24% Similarity=0.627 Sum_probs=15.6
Q ss_pred ccccCCcc---CcCcccCCCCcCC
Q 037534 47 NPRCIECK---AKGVVLCATCSGS 67 (108)
Q Consensus 47 ~~~C~~C~---G~G~~~C~~C~G~ 67 (108)
..+|+.|. +.|+..|..|+-+
T Consensus 14 k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp EEECTTTCCEECTTCSSCSSSSSC
T ss_pred CccCCCCCCcCCCCceecCCCCCc
Confidence 56788885 5666888888766
No 42
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=21.69 E-value=46 Score=28.34 Aligned_cols=21 Identities=38% Similarity=0.904 Sum_probs=18.1
Q ss_pred eCCCCCCcceEE------------CCCCCCceE
Q 037534 85 PCLGCGGTGNIM------------CAECGGRGH 105 (108)
Q Consensus 85 ~C~~C~G~G~~~------------C~~C~G~G~ 105 (108)
.|+.|.|.|.+. |..|+|+.+
T Consensus 640 ~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~ 672 (842)
T 2vf7_A 640 RCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRY 672 (842)
T ss_dssp BCTTTTTCSEEEETTCSSSCEEEECTTTTTCCB
T ss_pred ccccccCCCccchhhhcCCccceecccccCccc
Confidence 499999999872 999999875
No 43
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=20.12 E-value=1.2e+02 Score=16.39 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=16.7
Q ss_pred ccCCCCcCCceEeeeEEeec---CcEEEeeCCCCC
Q 037534 59 VLCATCSGSGLYVDSILESQ---GVIVKVPCLGCG 90 (108)
Q Consensus 59 ~~C~~C~G~G~~~~~~~~~~---G~~~~~~C~~C~ 90 (108)
..|+.|+....+.-.++... ++..-..|..|+
T Consensus 10 ~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg 44 (50)
T 1tfi_A 10 FTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECG 44 (50)
T ss_dssp SCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSC
T ss_pred cCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCC
Confidence 57888888776531111111 333345566663
Done!