Query 037535
Match_columns 216
No_of_seqs 144 out of 1230
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 13:14:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 99.9 7.7E-23 1.7E-27 156.3 11.1 108 105-216 1-108 (230)
2 PF12937 F-box-like: F-box-lik 99.2 1.4E-11 3E-16 70.0 3.2 40 1-40 1-40 (47)
3 PF00646 F-box: F-box domain; 99.1 3.7E-11 8.1E-16 68.6 1.6 43 2-44 4-46 (48)
4 PLN03215 ascorbic acid mannose 99.0 3.3E-09 7.1E-14 85.2 11.0 36 2-37 5-41 (373)
5 smart00256 FBOX A Receptor for 99.0 2.7E-10 5.8E-15 62.7 2.3 39 4-42 1-39 (41)
6 KOG2120 SCF ubiquitin ligase, 97.6 2.5E-05 5.4E-10 60.8 1.7 38 2-39 99-136 (419)
7 PHA02713 hypothetical protein; 97.6 0.0014 3.1E-08 56.6 12.2 84 119-214 432-516 (557)
8 KOG4441 Proteins containing BT 97.4 0.0013 2.9E-08 56.9 9.9 98 104-214 422-526 (571)
9 TIGR03548 mutarot_permut cycli 97.4 0.0056 1.2E-07 49.2 12.8 107 104-215 166-308 (323)
10 PHA02713 hypothetical protein; 97.4 0.0031 6.7E-08 54.6 11.7 98 104-214 298-402 (557)
11 KOG4441 Proteins containing BT 97.2 0.0015 3.3E-08 56.5 7.9 98 104-214 327-431 (571)
12 PHA03098 kelch-like protein; P 97.2 0.0063 1.4E-07 52.4 11.3 99 104-214 337-441 (534)
13 PHA02790 Kelch-like protein; P 97.1 0.0083 1.8E-07 51.0 11.4 91 103-214 356-450 (480)
14 PHA02790 Kelch-like protein; P 97.1 0.012 2.6E-07 50.0 11.8 96 104-214 313-411 (480)
15 KOG0281 Beta-TrCP (transducin 97.1 0.00037 8E-09 55.1 2.4 41 2-42 76-120 (499)
16 PLN02153 epithiospecifier prot 97.0 0.035 7.5E-07 45.0 13.9 85 104-193 80-175 (341)
17 KOG2997 F-box protein FBX9 [Ge 97.0 0.0003 6.4E-09 55.0 1.7 43 1-43 107-154 (366)
18 TIGR03547 muta_rot_YjhT mutatr 97.0 0.021 4.6E-07 46.3 12.1 37 177-214 168-204 (346)
19 PHA03098 kelch-like protein; P 97.0 0.023 5E-07 49.0 12.7 100 104-215 384-492 (534)
20 PRK14131 N-acetylneuraminic ac 96.8 0.057 1.2E-06 44.5 13.2 38 177-215 189-226 (376)
21 PLN02193 nitrile-specifier pro 96.7 0.082 1.8E-06 44.9 13.9 101 104-214 273-381 (470)
22 TIGR03547 muta_rot_YjhT mutatr 96.7 0.1 2.2E-06 42.3 14.1 87 119-215 168-262 (346)
23 TIGR03548 mutarot_permut cycli 96.7 0.062 1.3E-06 43.2 12.6 84 119-214 88-175 (323)
24 PLN02153 epithiospecifier prot 96.5 0.11 2.3E-06 42.2 13.0 87 120-214 160-255 (341)
25 PRK14131 N-acetylneuraminic ac 96.2 0.26 5.6E-06 40.6 13.6 86 119-214 189-283 (376)
26 PF13964 Kelch_6: Kelch motif 95.8 0.019 4.2E-07 32.4 3.9 23 118-140 27-49 (50)
27 PLN02193 nitrile-specifier pro 95.8 0.19 4E-06 42.8 11.3 82 104-193 223-310 (470)
28 KOG0379 Kelch repeat-containin 95.6 0.33 7.1E-06 41.5 11.8 79 109-194 123-207 (482)
29 PF01344 Kelch_1: Kelch motif; 95.4 0.038 8.2E-07 30.6 4.0 34 162-196 13-46 (47)
30 PF13964 Kelch_6: Kelch motif 94.9 0.042 9.1E-07 30.9 3.3 35 162-197 13-47 (50)
31 PF13418 Kelch_4: Galactose ox 94.4 0.1 2.2E-06 29.2 4.0 35 162-197 14-48 (49)
32 smart00612 Kelch Kelch domain. 93.8 0.12 2.6E-06 28.1 3.5 23 175-198 13-35 (47)
33 KOG4693 Uncharacterized conser 93.0 0.95 2.1E-05 35.2 8.1 90 118-214 215-306 (392)
34 PF07646 Kelch_2: Kelch motif; 92.5 0.25 5.5E-06 27.6 3.6 32 162-193 13-46 (49)
35 KOG4341 F-box protein containi 92.3 0.066 1.4E-06 44.0 1.3 35 3-37 74-108 (483)
36 KOG0274 Cdc4 and related F-box 91.9 0.046 1E-06 47.0 -0.0 42 1-42 108-149 (537)
37 PF01344 Kelch_1: Kelch motif; 90.1 0.16 3.4E-06 28.0 1.0 21 118-138 27-47 (47)
38 KOG4693 Uncharacterized conser 89.9 2.1 4.6E-05 33.4 7.1 84 106-194 31-122 (392)
39 smart00612 Kelch Kelch domain. 89.2 1.2 2.6E-05 23.9 4.3 24 118-141 14-37 (47)
40 PF13418 Kelch_4: Galactose ox 87.7 0.52 1.1E-05 26.1 2.1 21 118-138 28-48 (49)
41 PF13415 Kelch_3: Galactose ox 86.5 1.3 2.9E-05 24.6 3.4 25 173-198 15-39 (49)
42 KOG0379 Kelch repeat-containin 86.0 21 0.00046 30.6 12.1 69 118-193 189-257 (482)
43 PF13415 Kelch_3: Galactose ox 85.0 1.5 3.3E-05 24.3 3.1 23 119-141 19-41 (49)
44 KOG1230 Protein containing rep 82.8 27 0.00059 29.3 10.4 66 118-193 153-223 (521)
45 PF13013 F-box-like_2: F-box-l 81.3 0.96 2.1E-05 30.2 1.5 28 2-29 23-50 (109)
46 cd01206 Homer Homer type EVH1 78.2 7 0.00015 26.0 4.7 40 119-167 11-51 (111)
47 cd01207 Ena-Vasp Enabled-VASP- 77.4 12 0.00026 25.1 5.7 43 119-167 9-51 (111)
48 KOG4152 Host cell transcriptio 73.2 5.5 0.00012 34.1 4.0 69 118-195 56-126 (830)
49 smart00564 PQQ beta-propeller 72.8 8.7 0.00019 18.8 3.4 25 108-132 5-29 (33)
50 PF14339 DUF4394: Domain of un 69.7 19 0.00041 27.7 5.9 55 107-165 36-92 (236)
51 KOG0316 Conserved WD40 repeat- 67.4 28 0.00061 26.9 6.3 25 109-133 28-53 (307)
52 KOG2502 Tub family proteins [G 64.4 5.4 0.00012 32.2 2.1 35 3-37 47-89 (355)
53 PF07861 WND: WisP family N-Te 57.5 18 0.00039 26.6 3.6 33 100-132 31-63 (263)
54 KOG3926 F-box proteins [Amino 57.4 11 0.00024 29.5 2.6 37 2-38 203-240 (332)
55 PF15408 PH_7: Pleckstrin homo 57.0 5.2 0.00011 25.3 0.7 21 21-41 79-99 (104)
56 PF12768 Rax2: Cortical protei 49.4 1.3E+02 0.0029 23.8 8.0 66 119-194 16-81 (281)
57 PF03088 Str_synth: Strictosid 44.1 28 0.00061 22.3 2.6 20 117-136 35-54 (89)
58 PF13570 PQQ_3: PQQ-like domai 43.9 35 0.00075 17.7 2.6 23 106-128 18-40 (40)
59 PF07893 DUF1668: Protein of u 43.2 1.8E+02 0.004 23.7 9.6 39 102-140 69-107 (342)
60 PF08683 CAMSAP_CKK: Microtubu 42.7 62 0.0013 22.2 4.3 53 111-164 51-106 (123)
61 KOG1230 Protein containing rep 42.3 81 0.0018 26.6 5.5 70 118-194 97-171 (521)
62 PF01357 Pollen_allerg_1: Poll 40.7 91 0.002 19.5 5.1 39 155-193 6-44 (82)
63 PF01011 PQQ: PQQ enzyme repea 39.1 57 0.0012 16.7 3.4 23 111-133 2-24 (38)
64 PF12458 DUF3686: ATPase invol 37.2 2.6E+02 0.0056 23.7 7.9 57 109-165 238-301 (448)
65 cd00837 EVH1 EVH1 (Enabled, Va 34.2 1.4E+02 0.0029 19.6 5.7 41 119-168 9-49 (104)
66 PF13018 ESPR: Extended Signal 33.8 36 0.00077 15.9 1.4 15 122-136 7-21 (24)
67 PF11012 DUF2850: Protein of u 33.6 57 0.0012 20.4 2.7 26 187-213 4-32 (79)
68 PF00568 WH1: WH1 domain; Int 32.7 1.5E+02 0.0032 19.6 4.9 39 119-167 16-55 (111)
69 KOG2321 WD40 repeat protein [G 31.2 3.8E+02 0.0083 23.9 8.8 33 102-134 180-212 (703)
70 PF00397 WW: WW domain; Inter 31.1 73 0.0016 15.6 3.3 25 110-134 4-29 (31)
71 PF11900 DUF3420: Domain of un 31.0 36 0.00079 19.1 1.4 10 3-12 10-19 (49)
72 PF06881 Elongin_A: RNA polyme 31.0 38 0.00082 22.5 1.8 27 2-28 5-31 (109)
73 TIGR03032 conserved hypothetic 30.9 2.5E+02 0.0055 22.9 6.5 65 118-193 222-301 (335)
74 PF11932 DUF3450: Protein of u 30.3 41 0.00089 26.0 2.1 27 110-136 193-219 (251)
75 PF06592 DUF1138: Protein of u 30.1 27 0.0006 21.2 0.9 13 120-132 58-70 (73)
76 PF07569 Hira: TUP1-like enhan 29.6 2.5E+02 0.0054 21.2 8.3 34 99-132 12-45 (219)
77 PF14377 DUF4414: Domain of un 28.8 25 0.00054 23.3 0.6 14 2-15 7-20 (108)
78 KOG1310 WD40 repeat protein [G 28.3 2.2E+02 0.0048 25.1 6.1 65 108-185 60-125 (758)
79 PF11547 E3_UbLigase_EDD: E3 u 27.6 42 0.00092 18.6 1.2 19 2-20 6-24 (53)
80 PF12134 PRP8_domainIV: PRP8 d 26.5 56 0.0012 24.8 2.1 25 108-132 35-59 (231)
81 PF15232 DUF4585: Domain of un 26.1 1.7E+02 0.0036 18.1 4.0 10 124-133 34-43 (75)
82 PRK10753 transcriptional regul 25.8 42 0.00091 21.4 1.2 16 123-138 60-75 (90)
83 PRK10664 transcriptional regul 25.1 44 0.00095 21.3 1.2 15 123-137 60-74 (90)
84 cd00201 WW Two conserved trypt 24.9 92 0.002 14.7 3.3 27 110-136 3-29 (31)
85 PF03540 TFIID_30kDa: Transcri 24.3 67 0.0014 18.2 1.7 18 2-19 1-18 (51)
86 COG3055 Uncharacterized protei 24.1 2.1E+02 0.0045 23.7 5.0 70 118-197 195-266 (381)
87 COG3196 Uncharacterized protei 24.0 63 0.0014 22.8 1.9 17 3-19 83-99 (183)
88 PF08793 2C_adapt: 2-cysteine 23.5 35 0.00076 17.9 0.4 10 124-133 12-21 (37)
89 smart00456 WW Domain with 2 co 22.8 1.1E+02 0.0023 14.7 3.4 27 110-136 4-30 (32)
90 PF08450 SGL: SMP-30/Gluconola 22.8 3.4E+02 0.0073 20.5 8.0 68 106-193 8-76 (246)
91 KOG4499 Ca2+-binding protein R 22.4 3.9E+02 0.0084 21.0 6.1 35 104-139 218-256 (310)
92 PF13919 ASXH: Asx homology do 22.3 71 0.0015 22.4 1.9 19 3-21 46-64 (138)
93 KOG1852 Cell cycle-associated 22.0 52 0.0011 23.5 1.2 30 14-43 144-175 (223)
94 PF10902 DUF2693: Protein of u 20.7 1.2E+02 0.0025 19.2 2.5 20 174-193 46-65 (83)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.89 E-value=7.7e-23 Score=156.33 Aligned_cols=108 Identities=30% Similarity=0.475 Sum_probs=82.3
Q ss_pred EecccceEEeecCCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEEC
Q 037535 105 IDSCNGLIALKNDENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSL 184 (216)
Q Consensus 105 ~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss 184 (216)
++|||||||+... ..++||||+||+++.||+++........ ..++||||+.+++||||++.... .......++||++
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~-~~~~~G~d~~~~~YKVv~~~~~~-~~~~~~~~~Vys~ 77 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKES-DTYFLGYDPIEKQYKVLCFSDRS-GNRNQSEHQVYTL 77 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCccccccc-ceEEEeecccCCcEEEEEEEeec-CCCCCccEEEEEe
Confidence 4799999999865 7899999999999999976543211111 26799999999999999997632 1234578999999
Q ss_pred CCCcEEEecCCCCcceecCCCceEECCeeecC
Q 037535 185 RTNSWRRIRVDFPYYILHGWDGKFVDGHVHWL 216 (216)
Q Consensus 185 ~t~~W~~~~~~~p~~~~~~~~~v~~~G~lywl 216 (216)
++++||.+....+... ....+|++||++||+
T Consensus 78 ~~~~Wr~~~~~~~~~~-~~~~~v~~~G~lyw~ 108 (230)
T TIGR01640 78 GSNSWRTIECSPPHHP-LKSRGVCINGVLYYL 108 (230)
T ss_pred CCCCccccccCCCCcc-ccCCeEEECCEEEEE
Confidence 9999999883333222 222599999999996
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.20 E-value=1.4e-11 Score=69.98 Aligned_cols=40 Identities=25% Similarity=0.521 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHhcCCccchhhhccccHhhhhhhcChhH
Q 037535 1 MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEF 40 (216)
Q Consensus 1 ~~~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~F 40 (216)
|..||+|++.+||..|+++++.++.+|||+|+.++.++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l 40 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL 40 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence 6799999999999999999999999999999999988754
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=99.09 E-value=3.7e-11 Score=68.57 Aligned_cols=43 Identities=40% Similarity=0.498 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHhcCCccchhhhccccHhhhhhhcChhHHHHH
Q 037535 2 ASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIH 44 (216)
Q Consensus 2 ~~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~F~~~~ 44 (216)
.+||+|++.+||.+|+++++.+++.|||+|++++.+..+...+
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 4799999999999999999999999999999999998876543
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.03 E-value=3.3e-09 Score=85.18 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHhcCC-ccchhhhccccHhhhhhhcC
Q 037535 2 ASLPTDIKIDILSRLP-VKSLLRFKCMSKSFCSLIAS 37 (216)
Q Consensus 2 ~~LP~Dll~eIl~rLp-~~sl~r~r~VcK~W~~~i~s 37 (216)
++||+||+..|..||| ..++.|||+||++||+.+..
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 4799999999999997 44899999999999998763
No 5
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.99 E-value=2.7e-10 Score=62.65 Aligned_cols=39 Identities=46% Similarity=0.708 Sum_probs=36.3
Q ss_pred CCHHHHHHHHhcCCccchhhhccccHhhhhhhcChhHHH
Q 037535 4 LPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIK 42 (216)
Q Consensus 4 LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~F~~ 42 (216)
||+|++.+||.+|+++++.++++|||+|+.++.++.|-+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887643
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=2.5e-05 Score=60.78 Aligned_cols=38 Identities=34% Similarity=0.494 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHhcCCccchhhhccccHhhhhhhcChh
Q 037535 2 ASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQE 39 (216)
Q Consensus 2 ~~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~ 39 (216)
.+||||+++.||+.|+.|+|.+...|||+|+.+-.+..
T Consensus 99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 47999999999999999999999999999999876544
No 7
>PHA02713 hypothetical protein; Provisional
Probab=97.59 E-value=0.0014 Score=56.65 Aligned_cols=84 Identities=15% Similarity=0.186 Sum_probs=55.9
Q ss_pred CcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEECCC-CcEEEecCCCC
Q 037535 119 NGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRT-NSWRRIRVDFP 197 (216)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss~t-~~W~~~~~~~p 197 (216)
..+.++||.|++|..+|+++..+... ..+.++ -||..+++..+.......++.|+.++ ++|+.+. .+|
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~---~~~~~~-------~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~-~m~ 500 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRP---GVVSHK-------DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT-TTE 500 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccC---cEEEEC-------CEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc-ccC
Confidence 45889999999999999887654331 122221 17777765322122234679999999 8999988 776
Q ss_pred cceecCCCceEECCeee
Q 037535 198 YYILHGWDGKFVDGHVH 214 (216)
Q Consensus 198 ~~~~~~~~~v~~~G~ly 214 (216)
..... ...+.++|.+|
T Consensus 501 ~~r~~-~~~~~~~~~iy 516 (557)
T PHA02713 501 SRLSA-LHTILHDNTIM 516 (557)
T ss_pred ccccc-ceeEEECCEEE
Confidence 54332 25677888887
No 8
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.43 E-value=0.0013 Score=56.88 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=65.2
Q ss_pred EEecccceEEeec-------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCc
Q 037535 104 IIDSCNGLIALKN-------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEY 176 (216)
Q Consensus 104 ~~~s~~Gll~~~~-------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~ 176 (216)
-++..+|.|++.+ .-..+-.+||.|++|..+|++...+.... .+.+ .-+|.++++..+ ....
T Consensus 422 gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g---~a~~-------~~~iYvvGG~~~-~~~~ 490 (571)
T KOG4441|consen 422 GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG---VAVL-------NGKIYVVGGFDG-TSAL 490 (571)
T ss_pred EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce---EEEE-------CCEEEEECCccC-CCcc
Confidence 4556688887653 22578999999999999999988654421 1111 237888876543 4455
Q ss_pred cEEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535 177 TEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH 214 (216)
Q Consensus 177 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly 214 (216)
..+|.|+..+++|+.+. .++...... ..+.++|.+|
T Consensus 491 ~~VE~ydp~~~~W~~v~-~m~~~rs~~-g~~~~~~~ly 526 (571)
T KOG4441|consen 491 SSVERYDPETNQWTMVA-PMTSPRSAV-GVVVLGGKLY 526 (571)
T ss_pred ceEEEEcCCCCceeEcc-cCccccccc-cEEEECCEEE
Confidence 66999999999999997 443322211 3456666665
No 9
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.41 E-value=0.0056 Score=49.20 Aligned_cols=107 Identities=9% Similarity=0.139 Sum_probs=59.6
Q ss_pred EEecccceEEeec-C----CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCC-----
Q 037535 104 IIDSCNGLIALKN-D----ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVREN----- 173 (216)
Q Consensus 104 ~~~s~~Gll~~~~-~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~----- 173 (216)
.+...+|.|.+.. . ..++.++||.|++|..++++.............++... +=+++.++......
T Consensus 166 ~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~----~~~iyv~GG~~~~~~~~~~ 241 (323)
T TIGR03548 166 VCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKIN----ESLLLCIGGFNKDVYNDAV 241 (323)
T ss_pred eEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEEC----CCEEEEECCcCHHHHHHHH
Confidence 4445667775543 1 23568999999999999875321111000011111111 11555554321100
Q ss_pred --------------------------CCccEEEEEECCCCcEEEecCCCCcceecCCCceEECCeeec
Q 037535 174 --------------------------VEYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHW 215 (216)
Q Consensus 174 --------------------------~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lyw 215 (216)
.....+++|+..+++|..++ .+|.........+.++|.||-
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~~r~~~~~~~~~~~iyv 308 (323)
T TIGR03548 242 IDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG-NSPFFARCGAALLLTGNNIFS 308 (323)
T ss_pred hhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc-cccccccCchheEEECCEEEE
Confidence 01256999999999999988 555322222257888898884
No 10
>PHA02713 hypothetical protein; Provisional
Probab=97.39 E-value=0.0031 Score=54.58 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=63.0
Q ss_pred EEecccceEEeecC-------CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCc
Q 037535 104 IIDSCNGLIALKND-------ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEY 176 (216)
Q Consensus 104 ~~~s~~Gll~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~ 176 (216)
.++..+|.|.+.+. ...+..+||.+++|..+|+++..+... .... .+ + ||.++++.. .....
T Consensus 298 ~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~---~~~~--~~---g--~IYviGG~~-~~~~~ 366 (557)
T PHA02713 298 ASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF---SLAV--ID---D--TIYAIGGQN-GTNVE 366 (557)
T ss_pred EEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce---eEEE--EC---C--EEEEECCcC-CCCCC
Confidence 34445666644421 246889999999999999987654321 1122 22 1 788877632 22334
Q ss_pred cEEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535 177 TEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH 214 (216)
Q Consensus 177 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly 214 (216)
..+++|+..+++|+.++ .+|...... ..+.++|.+|
T Consensus 367 ~sve~Ydp~~~~W~~~~-~mp~~r~~~-~~~~~~g~IY 402 (557)
T PHA02713 367 RTIECYTMGDDKWKMLP-DMPIALSSY-GMCVLDQYIY 402 (557)
T ss_pred ceEEEEECCCCeEEECC-CCCcccccc-cEEEECCEEE
Confidence 67999999999999988 665433222 4567788877
No 11
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.22 E-value=0.0015 Score=56.54 Aligned_cols=98 Identities=16% Similarity=0.200 Sum_probs=66.4
Q ss_pred EEecccceEEeec-------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCc
Q 037535 104 IIDSCNGLIALKN-------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEY 176 (216)
Q Consensus 104 ~~~s~~Gll~~~~-------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~ 176 (216)
.++..+|.|.+.+ ..+.+..+||-+++|..+|++...+... +.... ..+|.++++.. .....
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~--------~v~~l--~g~iYavGG~d-g~~~l 395 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF--------GVAVL--DGKLYAVGGFD-GEKSL 395 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc--------eeEEE--CCEEEEEeccc-ccccc
Confidence 4555666665542 2357999999999999999998765432 21111 23777777642 34566
Q ss_pred cEEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535 177 TEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH 214 (216)
Q Consensus 177 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly 214 (216)
..+|.|+..+++|..+. .++... ....++.++|.+|
T Consensus 396 ~svE~YDp~~~~W~~va-~m~~~r-~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 396 NSVECYDPVTNKWTPVA-PMLTRR-SGHGVAVLGGKLY 431 (571)
T ss_pred ccEEEecCCCCcccccC-CCCcce-eeeEEEEECCEEE
Confidence 78999999999999998 554422 2225677888887
No 12
>PHA03098 kelch-like protein; Provisional
Probab=97.18 E-value=0.0063 Score=52.43 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=61.4
Q ss_pred EEecccceEEeec------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCcc
Q 037535 104 IIDSCNGLIALKN------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYT 177 (216)
Q Consensus 104 ~~~s~~Gll~~~~------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~ 177 (216)
.++..+|.|.+.+ ....+.++||.|++|..+|+++..+... ... ..+ + ++..+++.........
T Consensus 337 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~---~~~--~~~---~--~iYv~GG~~~~~~~~~ 406 (534)
T PHA03098 337 GVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP---CVV--NVN---N--LIYVIGGISKNDELLK 406 (534)
T ss_pred eEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc---eEE--EEC---C--EEEEECCcCCCCcccc
Confidence 3445566665442 1346889999999999998877654321 111 121 2 6777665322223356
Q ss_pred EEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535 178 EVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH 214 (216)
Q Consensus 178 ~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly 214 (216)
.+++|+..+++|+... .+|..... ...+..+|.+|
T Consensus 407 ~v~~yd~~t~~W~~~~-~~p~~r~~-~~~~~~~~~iy 441 (534)
T PHA03098 407 TVECFSLNTNKWSKGS-PLPISHYG-GCAIYHDGKIY 441 (534)
T ss_pred eEEEEeCCCCeeeecC-CCCccccC-ceEEEECCEEE
Confidence 7899999999999887 55543322 24556666665
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=97.13 E-value=0.0083 Score=51.03 Aligned_cols=91 Identities=16% Similarity=0.209 Sum_probs=60.3
Q ss_pred eEEecccceEEeec----CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccE
Q 037535 103 PIIDSCNGLIALKN----DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTE 178 (216)
Q Consensus 103 ~~~~s~~Gll~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~ 178 (216)
..++.++|.|.+.+ ....+..+||.|++|..+|+++..+... ....+ + + ||..+++ .
T Consensus 356 ~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~---~~~~~--~---~--~IYv~GG---------~ 416 (480)
T PHA02790 356 PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS---CALVF--G---R--RLFLVGR---------N 416 (480)
T ss_pred cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc---eEEEE--C---C--EEEEECC---------c
Confidence 35567788886653 1245678899999999999887654331 12222 2 1 7777642 3
Q ss_pred EEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535 179 VSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH 214 (216)
Q Consensus 179 ~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly 214 (216)
+++|+.++++|+.++ .++..... ...+.++|.+|
T Consensus 417 ~e~ydp~~~~W~~~~-~m~~~r~~-~~~~v~~~~IY 450 (480)
T PHA02790 417 AEFYCESSNTWTLID-DPIYPRDN-PELIIVDNKLL 450 (480)
T ss_pred eEEecCCCCcEeEcC-CCCCCccc-cEEEEECCEEE
Confidence 689999999999988 66542222 24677788877
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=97.07 E-value=0.012 Score=50.05 Aligned_cols=96 Identities=6% Similarity=-0.020 Sum_probs=62.0
Q ss_pred EEecccceEEeec---CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEE
Q 037535 104 IIDSCNGLIALKN---DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVS 180 (216)
Q Consensus 104 ~~~s~~Gll~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~ 180 (216)
..+..+|.|.+.+ ....+-.+||.+++|..+|+++..+.. ..+..++. ||..+++.. .....++
T Consensus 313 ~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-----~~~~~~~g-----~IYviGG~~---~~~~~ve 379 (480)
T PHA02790 313 SGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-----PAVASINN-----VIYVIGGHS---ETDTTTE 379 (480)
T ss_pred eEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-----cEEEEECC-----EEEEecCcC---CCCccEE
Confidence 3445677775543 234678899999999999998765432 11222221 777776532 1235689
Q ss_pred EEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535 181 VYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH 214 (216)
Q Consensus 181 vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly 214 (216)
+|+.++++|+.++ .++..... ...+.++|.+|
T Consensus 380 ~ydp~~~~W~~~~-~m~~~r~~-~~~~~~~~~IY 411 (480)
T PHA02790 380 YLLPNHDQWQFGP-STYYPHYK-SCALVFGRRLF 411 (480)
T ss_pred EEeCCCCEEEeCC-CCCCcccc-ceEEEECCEEE
Confidence 9999999999987 55533322 14567788877
No 15
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.06 E-value=0.00037 Score=55.06 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=36.9
Q ss_pred CCCC----HHHHHHHHhcCCccchhhhccccHhhhhhhcChhHHH
Q 037535 2 ASLP----TDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIK 42 (216)
Q Consensus 2 ~~LP----~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~F~~ 42 (216)
..|| +++.+.||+.|...+|+.+..|||+|+.+++++..-+
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 4589 9999999999999999999999999999999876533
No 16
>PLN02153 epithiospecifier protein
Probab=97.05 E-value=0.035 Score=45.03 Aligned_cols=85 Identities=7% Similarity=0.104 Sum_probs=48.2
Q ss_pred EEecccceEEeec------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCC----
Q 037535 104 IIDSCNGLIALKN------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVREN---- 173 (216)
Q Consensus 104 ~~~s~~Gll~~~~------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~---- 173 (216)
.++..+|.|.+.. ...++.++||.|++|..++++.............+..++ + |++.+++.....
T Consensus 80 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~---~--~iyv~GG~~~~~~~~~ 154 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDE---N--HVYVFGGVSKGGLMKT 154 (341)
T ss_pred EEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEEC---C--EEEEECCccCCCccCC
Confidence 3445566665442 124789999999999999765211100000011111111 1 666665532111
Q ss_pred -CCccEEEEEECCCCcEEEec
Q 037535 174 -VEYTEVSVYSLRTNSWRRIR 193 (216)
Q Consensus 174 -~~~~~~~vyss~t~~W~~~~ 193 (216)
.....+++|+..+++|+.++
T Consensus 155 ~~~~~~v~~yd~~~~~W~~l~ 175 (341)
T PLN02153 155 PERFRTIEAYNIADGKWVQLP 175 (341)
T ss_pred CcccceEEEEECCCCeEeeCC
Confidence 12346899999999999887
No 17
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=97.05 E-value=0.0003 Score=54.99 Aligned_cols=43 Identities=16% Similarity=0.407 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHhcCC-----ccchhhhccccHhhhhhhcChhHHHH
Q 037535 1 MASLPTDIKIDILSRLP-----VKSLLRFKCMSKSFCSLIASQEFIKI 43 (216)
Q Consensus 1 ~~~LP~Dll~eIl~rLp-----~~sl~r~r~VcK~W~~~i~s~~F~~~ 43 (216)
|..||+|++.+||.+.= ..++.++.+|||.|+-...+|+|-+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 46799999999998864 48999999999999999999998654
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.98 E-value=0.021 Score=46.32 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=25.7
Q ss_pred cEEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535 177 TEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH 214 (216)
Q Consensus 177 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly 214 (216)
..+++|+..+++|+.++ .+|.........+.++|.||
T Consensus 168 ~~v~~YDp~t~~W~~~~-~~p~~~r~~~~~~~~~~~iy 204 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLG-ENPFLGTAGSAIVHKGNKLL 204 (346)
T ss_pred ceEEEEECCCCceeECc-cCCCCcCCCceEEEECCEEE
Confidence 57999999999999988 65532211123456777777
No 19
>PHA03098 kelch-like protein; Provisional
Probab=96.96 E-value=0.023 Score=48.95 Aligned_cols=100 Identities=12% Similarity=0.066 Sum_probs=60.3
Q ss_pred EEecccceEEeecC-------CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCC--C
Q 037535 104 IIDSCNGLIALKND-------ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVREN--V 174 (216)
Q Consensus 104 ~~~s~~Gll~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~--~ 174 (216)
.++..+|.+.+.+. ...+.++||.|++|..+++++..+... ....++ + ++..+++..... .
T Consensus 384 ~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-----~~~~~~---~--~iyv~GG~~~~~~~~ 453 (534)
T PHA03098 384 CVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-----CAIYHD---G--KIYVIGGISYIDNIK 453 (534)
T ss_pred eEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-----eEEEEC---C--EEEEECCccCCCCCc
Confidence 34556777765431 256899999999999998776544321 112222 1 566665432111 1
Q ss_pred CccEEEEEECCCCcEEEecCCCCcceecCCCceEECCeeec
Q 037535 175 EYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHW 215 (216)
Q Consensus 175 ~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lyw 215 (216)
....+++|+..+++|+.++ .++..... ...+.++|.+|-
T Consensus 454 ~~~~v~~yd~~~~~W~~~~-~~~~~r~~-~~~~~~~~~iyv 492 (534)
T PHA03098 454 VYNIVESYNPVTNKWTELS-SLNFPRIN-ASLCIFNNKIYV 492 (534)
T ss_pred ccceEEEecCCCCceeeCC-CCCccccc-ceEEEECCEEEE
Confidence 2345899999999999988 55432211 134556777763
No 20
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=96.79 E-value=0.057 Score=44.47 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=26.8
Q ss_pred cEEEEEECCCCcEEEecCCCCcceecCCCceEECCeeec
Q 037535 177 TEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHW 215 (216)
Q Consensus 177 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lyw 215 (216)
..+++|+..++.|+.+. .+|.........+.++|.||-
T Consensus 189 ~~v~~YD~~t~~W~~~~-~~p~~~~~~~a~v~~~~~iYv 226 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAG-ESPFLGTAGSAVVIKGNKLWL 226 (376)
T ss_pred ceEEEEECCCCeeeECC-cCCCCCCCcceEEEECCEEEE
Confidence 57899999999999988 565422222245667888874
No 21
>PLN02193 nitrile-specifier protein
Probab=96.71 E-value=0.082 Score=44.92 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=55.3
Q ss_pred EEecccceEEeec------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCcc
Q 037535 104 IIDSCNGLIALKN------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYT 177 (216)
Q Consensus 104 ~~~s~~Gll~~~~------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~ 177 (216)
.+...++.|.+.. ....+.++||.|++|..++++.............. ++ + |+..+.... .....
T Consensus 273 ~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~--~~---g--kiyviGG~~--g~~~~ 343 (470)
T PLN02193 273 SMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV--VQ---G--KVWVVYGFN--GCEVD 343 (470)
T ss_pred EEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE--EC---C--cEEEEECCC--CCccC
Confidence 3444566665442 23468899999999999876432111111111111 12 1 455554321 12346
Q ss_pred EEEEEECCCCcEEEecCC--CCcceecCCCceEECCeee
Q 037535 178 EVSVYSLRTNSWRRIRVD--FPYYILHGWDGKFVDGHVH 214 (216)
Q Consensus 178 ~~~vyss~t~~W~~~~~~--~p~~~~~~~~~v~~~G~ly 214 (216)
.+++|+..+++|+.+... .|.... ...++.+++.+|
T Consensus 344 dv~~yD~~t~~W~~~~~~g~~P~~R~-~~~~~~~~~~iy 381 (470)
T PLN02193 344 DVHYYDPVQDKWTQVETFGVRPSERS-VFASAAVGKHIV 381 (470)
T ss_pred ceEEEECCCCEEEEeccCCCCCCCcc-eeEEEEECCEEE
Confidence 799999999999988621 122111 114566676666
No 22
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.71 E-value=0.1 Score=42.33 Aligned_cols=87 Identities=14% Similarity=0.085 Sum_probs=50.0
Q ss_pred CcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEEC--CCCcEEEecCCC
Q 037535 119 NGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSL--RTNSWRRIRVDF 196 (216)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss--~t~~W~~~~~~~ 196 (216)
..+.++||.|++|..+++++...... .....++ =||+.+.+..........+++|+. +++.|..+. .+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~----~~~~~~~-----~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~-~m 237 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAG----SAIVHKG-----NKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP-PL 237 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCC----ceEEEEC-----CEEEEEeeeeCCCccchheEEEEecCCCceeeecC-CC
Confidence 56899999999999998876422111 1111222 177777664322222234555654 677999888 55
Q ss_pred Cccee----c--CCCceEECCeeec
Q 037535 197 PYYIL----H--GWDGKFVDGHVHW 215 (216)
Q Consensus 197 p~~~~----~--~~~~v~~~G~lyw 215 (216)
|.... . ....+.++|.||-
T Consensus 238 ~~~r~~~~~~~~~~~a~~~~~~Iyv 262 (346)
T TIGR03547 238 PPPKSSSQEGLAGAFAGISNGVLLV 262 (346)
T ss_pred CCCCCCccccccEEeeeEECCEEEE
Confidence 43211 0 0124567887773
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=96.71 E-value=0.062 Score=43.19 Aligned_cols=84 Identities=8% Similarity=-0.046 Sum_probs=51.8
Q ss_pred CcEEEEcCCCcce----eecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEECCCCcEEEecC
Q 037535 119 NGIAFWNPSTKEH----LILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNSWRRIRV 194 (216)
Q Consensus 119 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~ 194 (216)
..+..+|+.+++| ..+|+++..+... ... .++. ||..+.+.. .......+++|+..+++|..++
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~---~~~--~~~~-----~iYv~GG~~-~~~~~~~v~~yd~~~~~W~~~~- 155 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENG---SAC--YKDG-----TLYVGGGNR-NGKPSNKSYLFNLETQEWFELP- 155 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCc---eEE--EECC-----EEEEEeCcC-CCccCceEEEEcCCCCCeeECC-
Confidence 5788999999987 6777776544321 111 1221 677766532 2233567899999999999987
Q ss_pred CCCcceecCCCceEECCeee
Q 037535 195 DFPYYILHGWDGKFVDGHVH 214 (216)
Q Consensus 195 ~~p~~~~~~~~~v~~~G~ly 214 (216)
.+|.........+.++|.||
T Consensus 156 ~~p~~~r~~~~~~~~~~~iY 175 (323)
T TIGR03548 156 DFPGEPRVQPVCVKLQNELY 175 (323)
T ss_pred CCCCCCCCcceEEEECCEEE
Confidence 55432211113456777776
No 24
>PLN02153 epithiospecifier protein
Probab=96.53 E-value=0.11 Score=42.19 Aligned_cols=87 Identities=13% Similarity=0.143 Sum_probs=47.1
Q ss_pred cEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEee-------CCCCccEEEEEECCCCcEEEe
Q 037535 120 GIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVR-------ENVEYTEVSVYSLRTNSWRRI 192 (216)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~-------~~~~~~~~~vyss~t~~W~~~ 192 (216)
.+.++||.|++|..+|.+.............. ++ + |+..+..... .......+++|+.++++|+.+
T Consensus 160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~--~~---~--~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~ 232 (341)
T PLN02153 160 TIEAYNIADGKWVQLPDPGENFEKRGGAGFAV--VQ---G--KIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEV 232 (341)
T ss_pred eEEEEECCCCeEeeCCCCCCCCCCCCcceEEE--EC---C--eEEEEeccccccccCCccceecCceEEEEcCCCcEEec
Confidence 68899999999999987642211111101111 11 1 4554433210 011235689999999999988
Q ss_pred cCC--CCcceecCCCceEECCeee
Q 037535 193 RVD--FPYYILHGWDGKFVDGHVH 214 (216)
Q Consensus 193 ~~~--~p~~~~~~~~~v~~~G~ly 214 (216)
... +|.... ....+.++|.||
T Consensus 233 ~~~g~~P~~r~-~~~~~~~~~~iy 255 (341)
T PLN02153 233 ETTGAKPSARS-VFAHAVVGKYII 255 (341)
T ss_pred cccCCCCCCcc-eeeeEEECCEEE
Confidence 621 232111 113456666665
No 25
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=96.19 E-value=0.26 Score=40.60 Aligned_cols=86 Identities=10% Similarity=0.028 Sum_probs=48.7
Q ss_pred CcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEE--EEECCCCcEEEecCCC
Q 037535 119 NGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVS--VYSLRTNSWRRIRVDF 196 (216)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~--vyss~t~~W~~~~~~~ 196 (216)
.++.++||.|++|..+++++...... ......+ -||..+++....+.....+. .|+.++++|..+. .+
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~----~a~v~~~-----~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~ 258 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAG----SAVVIKG-----NKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP-DL 258 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCc----ceEEEEC-----CEEEEEeeeECCCcCChhheEEEecCCCcceeecC-CC
Confidence 46899999999999998766422111 1112222 27887776432222222223 3466889999888 55
Q ss_pred Cccee---cC---C-CceEECCeee
Q 037535 197 PYYIL---HG---W-DGKFVDGHVH 214 (216)
Q Consensus 197 p~~~~---~~---~-~~v~~~G~ly 214 (216)
|.... .. . ..+.++|.+|
T Consensus 259 p~~~~~~~~~~~~~~~a~~~~~~iy 283 (376)
T PRK14131 259 PPAPGGSSQEGVAGAFAGYSNGVLL 283 (376)
T ss_pred CCCCcCCcCCccceEeceeECCEEE
Confidence 43211 00 0 1456777776
No 26
>PF13964 Kelch_6: Kelch motif
Probab=95.83 E-value=0.019 Score=32.37 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCcceeecCCCCCC
Q 037535 118 ENGIAFWNPSTKEHLILPKYWGD 140 (216)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~ 140 (216)
..++.++||.|++|..+|+++..
T Consensus 27 ~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred cccEEEEcCCCCcEEECCCCCCC
Confidence 46899999999999999988753
No 27
>PLN02193 nitrile-specifier protein
Probab=95.81 E-value=0.19 Score=42.80 Aligned_cols=82 Identities=11% Similarity=0.117 Sum_probs=48.9
Q ss_pred EEecccceEEeec------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCcc
Q 037535 104 IIDSCNGLIALKN------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYT 177 (216)
Q Consensus 104 ~~~s~~Gll~~~~------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~ 177 (216)
.++..++.|.+.. ...+++++||.|++|..+++.......... ......+ =|++.+.... ......
T Consensus 223 ~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~--h~~~~~~-----~~iYv~GG~~-~~~~~~ 294 (470)
T PLN02193 223 RMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSF--HSMAADE-----ENVYVFGGVS-ATARLK 294 (470)
T ss_pred EEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccc--eEEEEEC-----CEEEEECCCC-CCCCcc
Confidence 3445566665442 235799999999999999775321111101 1111111 2677665431 223446
Q ss_pred EEEEEECCCCcEEEec
Q 037535 178 EVSVYSLRTNSWRRIR 193 (216)
Q Consensus 178 ~~~vyss~t~~W~~~~ 193 (216)
.+++|+..+++|+.+.
T Consensus 295 ~~~~yd~~t~~W~~~~ 310 (470)
T PLN02193 295 TLDSYNIVDKKWFHCS 310 (470)
T ss_pred eEEEEECCCCEEEeCC
Confidence 7899999999999876
No 28
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=95.55 E-value=0.33 Score=41.48 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=50.8
Q ss_pred cceEEeecCC------CcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEE
Q 037535 109 NGLIALKNDE------NGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVY 182 (216)
Q Consensus 109 ~Gll~~~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vy 182 (216)
+.|+++.... .++..+|+.|++|..+.+.....+....+.....| . ||+.+++..........+.+|
T Consensus 123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g--~-----~l~vfGG~~~~~~~~ndl~i~ 195 (482)
T KOG0379|consen 123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG--T-----KLVVFGGIGGTGDSLNDLHIY 195 (482)
T ss_pred CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC--C-----EEEEECCccCcccceeeeeee
Confidence 4455554432 38999999999999986654422222122233322 1 777776543333467889999
Q ss_pred ECCCCcEEEecC
Q 037535 183 SLRTNSWRRIRV 194 (216)
Q Consensus 183 ss~t~~W~~~~~ 194 (216)
+..+.+|..+..
T Consensus 196 d~~~~~W~~~~~ 207 (482)
T KOG0379|consen 196 DLETSTWSELDT 207 (482)
T ss_pred ccccccceeccc
Confidence 999999999873
No 29
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=95.41 E-value=0.038 Score=30.55 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=28.0
Q ss_pred EEEEEEEEeeCCCCccEEEEEECCCCcEEEecCCC
Q 037535 162 KVVRLVHFVRENVEYTEVSVYSLRTNSWRRIRVDF 196 (216)
Q Consensus 162 kvv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~ 196 (216)
+|+.+++..........+++|+..+++|+.++ .+
T Consensus 13 ~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~m 46 (47)
T PF01344_consen 13 KIYVIGGYDGNNQPTNSVEVYDPETNTWEELP-PM 46 (47)
T ss_dssp EEEEEEEBESTSSBEEEEEEEETTTTEEEEEE-EE
T ss_pred EEEEEeeecccCceeeeEEEEeCCCCEEEEcC-CC
Confidence 78888776555678889999999999999987 44
No 30
>PF13964 Kelch_6: Kelch motif
Probab=94.91 E-value=0.042 Score=30.93 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=26.7
Q ss_pred EEEEEEEEeeCCCCccEEEEEECCCCcEEEecCCCC
Q 037535 162 KVVRLVHFVRENVEYTEVSVYSLRTNSWRRIRVDFP 197 (216)
Q Consensus 162 kvv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p 197 (216)
||+.+++..........+++|+.++++|+.++ .+|
T Consensus 13 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~mp 47 (50)
T PF13964_consen 13 KIYVFGGYDNSGKYSNDVERYDPETNTWEQLP-PMP 47 (50)
T ss_pred EEEEECCCCCCCCccccEEEEcCCCCcEEECC-CCC
Confidence 67777654332456788999999999999998 665
No 31
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=94.43 E-value=0.1 Score=29.16 Aligned_cols=35 Identities=14% Similarity=0.400 Sum_probs=20.9
Q ss_pred EEEEEEEEeeCCCCccEEEEEECCCCcEEEecCCCC
Q 037535 162 KVVRLVHFVRENVEYTEVSVYSLRTNSWRRIRVDFP 197 (216)
Q Consensus 162 kvv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p 197 (216)
+|+.+++..........+.+|+..+++|+.++ .+|
T Consensus 14 ~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~-~~P 48 (49)
T PF13418_consen 14 SIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP-SMP 48 (49)
T ss_dssp EEEEE--EEE-TEE---EEEEETTTTEEEE---SS-
T ss_pred eEEEECCCCCCCcccCCEEEEECCCCEEEECC-CCC
Confidence 67777776555456778899999999999986 555
No 32
>smart00612 Kelch Kelch domain.
Probab=93.77 E-value=0.12 Score=28.14 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=18.6
Q ss_pred CccEEEEEECCCCcEEEecCCCCc
Q 037535 175 EYTEVSVYSLRTNSWRRIRVDFPY 198 (216)
Q Consensus 175 ~~~~~~vyss~t~~W~~~~~~~p~ 198 (216)
....+++|+.++++|+..+ .++.
T Consensus 13 ~~~~v~~yd~~~~~W~~~~-~~~~ 35 (47)
T smart00612 13 RLKSVEVYDPETNKWTPLP-SMPT 35 (47)
T ss_pred eeeeEEEECCCCCeEccCC-CCCC
Confidence 3567899999999999888 6654
No 33
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=93.00 E-value=0.95 Score=35.22 Aligned_cols=90 Identities=17% Similarity=0.134 Sum_probs=55.8
Q ss_pred CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEee-CCCCccEEEEEECCCCcEEEecCCC
Q 037535 118 ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVR-ENVEYTEVSVYSLRTNSWRRIRVDF 196 (216)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~-~~~~~~~~~vyss~t~~W~~~~~~~ 196 (216)
..++.+.|-.|+.|.+-|+....... ......|+|+. |+..++++.. -+........|+..|..|+.+.+.-
T Consensus 215 c~~i~~ld~~T~aW~r~p~~~~~P~G--RRSHS~fvYng-----~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~G 287 (392)
T KOG4693|consen 215 CDTIMALDLATGAWTRTPENTMKPGG--RRSHSTFVYNG-----KMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRG 287 (392)
T ss_pred cceeEEEeccccccccCCCCCcCCCc--ccccceEEEcc-----eEEEecccchhhhhhhcceeecccccchheeeeccC
Confidence 45899999999999988765432221 12355677764 5666654322 1245566778899999999887432
Q ss_pred Ccce-ecCCCceEECCeee
Q 037535 197 PYYI-LHGWDGKFVDGHVH 214 (216)
Q Consensus 197 p~~~-~~~~~~v~~~G~ly 214 (216)
.... .-.+.++.++|++|
T Consensus 288 k~P~aRRRqC~~v~g~kv~ 306 (392)
T KOG4693|consen 288 KYPSARRRQCSVVSGGKVY 306 (392)
T ss_pred CCCCcccceeEEEECCEEE
Confidence 1111 11125677777776
No 34
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=92.48 E-value=0.25 Score=27.56 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=25.0
Q ss_pred EEEEEEEE--eeCCCCccEEEEEECCCCcEEEec
Q 037535 162 KVVRLVHF--VRENVEYTEVSVYSLRTNSWRRIR 193 (216)
Q Consensus 162 kvv~~~~~--~~~~~~~~~~~vyss~t~~W~~~~ 193 (216)
|++.++.. .........+++|+.++.+|+.++
T Consensus 13 kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 13 KIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred EEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 77777665 233467788999999999999887
No 35
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=92.33 E-value=0.066 Score=44.00 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHhcCCccchhhhccccHhhhhhhcC
Q 037535 3 SLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIAS 37 (216)
Q Consensus 3 ~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s 37 (216)
.||.|++..||+-|..++++|++.+|+.|+-+.-+
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD 108 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALD 108 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence 69999999999999999999999999999976644
No 36
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=91.88 E-value=0.046 Score=47.04 Aligned_cols=42 Identities=21% Similarity=0.420 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHhcCCccchhhhccccHhhhhhhcChhHHH
Q 037535 1 MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIK 42 (216)
Q Consensus 1 ~~~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~F~~ 42 (216)
|..||.++...||..|+.+++..+++||+.|+.++.+...-.
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 457999999999999999999999999999999998655543
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=90.09 E-value=0.16 Score=27.98 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCcceeecCCCC
Q 037535 118 ENGIAFWNPSTKEHLILPKYW 138 (216)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~ 138 (216)
...+.++||.|++|..+|+++
T Consensus 27 ~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 27 TNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEEEETTTTEEEEEEEES
T ss_pred eeeEEEEeCCCCEEEEcCCCC
Confidence 458999999999999998764
No 38
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=89.86 E-value=2.1 Score=33.40 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=50.5
Q ss_pred ecccceEEeecCCCcEEEEcCCCcceeecCCCCCCCC--Ccc------ceeeeEEcccCCCCCeEEEEEEEEeeCCCCcc
Q 037535 106 DSCNGLIALKNDENGIAFWNPSTKEHLILPKYWGDLK--DKV------YMVVDGFGYDAVNDDYKVVRLVHFVRENVEYT 177 (216)
Q Consensus 106 ~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~--~~~------~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~ 177 (216)
+.|.|-..=....-++-|.|..+-+|..+|+--.... ... .+......|+. |+...++.-+.+....
T Consensus 31 GYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d-----~~yvWGGRND~egaCN 105 (392)
T KOG4693|consen 31 GYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQD-----KAYVWGGRNDDEGACN 105 (392)
T ss_pred CcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcc-----eEEEEcCccCcccccc
Confidence 4455555444456789999999999999988322111 100 01111222221 5555544434456677
Q ss_pred EEEEEECCCCcEEEecC
Q 037535 178 EVSVYSLRTNSWRRIRV 194 (216)
Q Consensus 178 ~~~vyss~t~~W~~~~~ 194 (216)
....|+.+++.|+..++
T Consensus 106 ~Ly~fDp~t~~W~~p~v 122 (392)
T KOG4693|consen 106 LLYEFDPETNVWKKPEV 122 (392)
T ss_pred eeeeeccccccccccce
Confidence 88899999999987764
No 39
>smart00612 Kelch Kelch domain.
Probab=89.15 E-value=1.2 Score=23.93 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCcceeecCCCCCCC
Q 037535 118 ENGIAFWNPSTKEHLILPKYWGDL 141 (216)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~ 141 (216)
...+.++||.|++|..+|+++..+
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r 37 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPR 37 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCcc
Confidence 357889999999999999876544
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=87.67 E-value=0.52 Score=26.13 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCcceeecCCCC
Q 037535 118 ENGIAFWNPSTKEHLILPKYW 138 (216)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~ 138 (216)
..+++++|+.|++|.+||++|
T Consensus 28 ~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 28 LNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp ---EEEEETTTTEEEE--SS-
T ss_pred cCCEEEEECCCCEEEECCCCC
Confidence 358999999999999997765
No 41
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=86.53 E-value=1.3 Score=24.56 Aligned_cols=25 Identities=40% Similarity=0.766 Sum_probs=19.7
Q ss_pred CCCccEEEEEECCCCcEEEecCCCCc
Q 037535 173 NVEYTEVSVYSLRTNSWRRIRVDFPY 198 (216)
Q Consensus 173 ~~~~~~~~vyss~t~~W~~~~~~~p~ 198 (216)
......+.+|+..+++|+.+. ++|.
T Consensus 15 ~~~~nd~~~~~~~~~~W~~~~-~~P~ 39 (49)
T PF13415_consen 15 GTRLNDVWVFDLDTNTWTRIG-DLPP 39 (49)
T ss_pred CCEecCEEEEECCCCEEEECC-CCCC
Confidence 345567889999999999996 6554
No 42
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=85.98 E-value=21 Score=30.61 Aligned_cols=69 Identities=13% Similarity=0.091 Sum_probs=41.5
Q ss_pred CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEECCCCcEEEec
Q 037535 118 ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNSWRRIR 193 (216)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 193 (216)
..+++|+|+.|.+|.++............+..... ++ |++.+.+....+.....+..++..+..|....
T Consensus 189 ~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~------~~-~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~ 257 (482)
T KOG0379|consen 189 LNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVV------GN-KLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP 257 (482)
T ss_pred eeeeeeeccccccceecccCCCCCCCCCCceEEEE------CC-eEEEEeccccCCceecceEeeecccceeeecc
Confidence 46899999999999998543332221111111111 12 44444443334456677889999999998655
No 43
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=85.02 E-value=1.5 Score=24.28 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=19.3
Q ss_pred CcEEEEcCCCcceeecCCCCCCC
Q 037535 119 NGIAFWNPSTKEHLILPKYWGDL 141 (216)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~ 141 (216)
.+++++|+.|++|.+++..+..+
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCc
Confidence 58999999999999997766544
No 44
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=82.80 E-value=27 Score=29.26 Aligned_cols=66 Identities=14% Similarity=0.239 Sum_probs=39.2
Q ss_pred CCcEEEEcCCCcceeecC--CCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCC---CCccEEEEEECCCCcEEEe
Q 037535 118 ENGIAFWNPSTKEHLILP--KYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVREN---VEYTEVSVYSLRTNSWRRI 192 (216)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP--~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~---~~~~~~~vyss~t~~W~~~ 192 (216)
..++.+++-.|++|-.|- ..|+.+..+.+ .+. .-+++.+++..+.. .+...+.+|++.|-+|..+
T Consensus 153 YkD~W~fd~~trkweql~~~g~PS~RSGHRM---vaw-------K~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kl 222 (521)
T KOG1230|consen 153 YKDLWLFDLKTRKWEQLEFGGGPSPRSGHRM---VAW-------KRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKL 222 (521)
T ss_pred hhheeeeeeccchheeeccCCCCCCCcccee---EEe-------eeeEEEEcceecCCCceEEeeeeEEEeccceeeeec
Confidence 568999999999999873 33333322211 110 01333333322211 3456788999999999888
Q ss_pred c
Q 037535 193 R 193 (216)
Q Consensus 193 ~ 193 (216)
.
T Consensus 223 e 223 (521)
T KOG1230|consen 223 E 223 (521)
T ss_pred c
Confidence 7
No 45
>PF13013 F-box-like_2: F-box-like domain
Probab=81.34 E-value=0.96 Score=30.21 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHhcCCccchhhhccccH
Q 037535 2 ASLPTDIKIDILSRLPVKSLLRFKCMSK 29 (216)
Q Consensus 2 ~~LP~Dll~eIl~rLp~~sl~r~r~VcK 29 (216)
.+||+||++.|+..-....+...-..|+
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 4699999999999999888766666665
No 46
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=78.20 E-value=7 Score=26.00 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=29.4
Q ss_pred CcEEEEcCCCc-ceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEE
Q 037535 119 NGIAFWNPSTK-EHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLV 167 (216)
Q Consensus 119 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 167 (216)
..++++||.|+ .|.. ..... ....+-+|+..+.|+||.+.
T Consensus 11 A~V~~yd~~tKk~WvP--s~~~~-------~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 11 AHVFQIDPKTKKNWIP--ASKHA-------VTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eEEEEECCCCcceeEe--CCCCc-------eeEEEEecCCCcEEEEEEec
Confidence 47899999986 6763 33211 36677789999999999864
No 47
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=77.37 E-value=12 Score=25.12 Aligned_cols=43 Identities=12% Similarity=0.048 Sum_probs=28.2
Q ss_pred CcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEE
Q 037535 119 NGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLV 167 (216)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 167 (216)
..+.+.||.|+.|...-+..... ....+-+++..+.|.|+...
T Consensus 9 A~Vm~~d~~tk~W~P~~~~~~~l------s~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 9 ASVMVYDDSNKKWVPAGGGSQGF------SRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEeeEEcCCCCcEEcCCCCCCCc------ceEEEEEcCCCCEEEEEEee
Confidence 46888999999866432211111 24455667888999999864
No 48
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=73.21 E-value=5.5 Score=34.07 Aligned_cols=69 Identities=19% Similarity=0.400 Sum_probs=44.2
Q ss_pred CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEECCCCc--EEEecCC
Q 037535 118 ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNS--WRRIRVD 195 (216)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss~t~~--W~~~~~~ 195 (216)
-.++-|+|-.|+||. +|....+.+.. +..++|.+|.. |+++++++.+. ....=+.|.+.... |+.+...
T Consensus 56 iDELHvYNTatnqWf-~PavrGDiPpg--cAA~GfvcdGt----rilvFGGMvEY--GkYsNdLYELQasRWeWkrlkp~ 126 (830)
T KOG4152|consen 56 IDELHVYNTATNQWF-APAVRGDIPPG--CAAFGFVCDGT----RILVFGGMVEY--GKYSNDLYELQASRWEWKRLKPK 126 (830)
T ss_pred hhhhhhhccccceee-cchhcCCCCCc--hhhcceEecCc----eEEEEccEeee--ccccchHHHhhhhhhhHhhcCCC
Confidence 458899999999998 56555554442 13555555543 88888775543 34455778888765 4666533
No 49
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=72.85 E-value=8.7 Score=18.82 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=19.2
Q ss_pred ccceEEeecCCCcEEEEcCCCccee
Q 037535 108 CNGLIALKNDENGIAFWNPSTKEHL 132 (216)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~ 132 (216)
.+|++.+......++.+|+.||+.+
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEE
Confidence 4667777777788888999888755
No 50
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=69.68 E-value=19 Score=27.66 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=38.2
Q ss_pred cccceEEeecCCCcEEEEcCCCcceeec--CCCCCCCCCccceeeeEEcccCCCCCeEEEE
Q 037535 107 SCNGLIALKNDENGIAFWNPSTKEHLIL--PKYWGDLKDKVYMVVDGFGYDAVNDDYKVVR 165 (216)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~ 165 (216)
..+|.|.......++|..||.|+.-..+ .+....... ..++|.|+|.-+.-+||.
T Consensus 36 pa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g----~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 36 PANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSG----TAFGVDFNPAADRLRVVS 92 (236)
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccC----ceEEEecCcccCcEEEEc
Confidence 4577776666778999999999997666 333222222 367788888877777773
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=67.41 E-value=28 Score=26.88 Aligned_cols=25 Identities=20% Similarity=0.507 Sum_probs=17.5
Q ss_pred cceEEee-cCCCcEEEEcCCCcceee
Q 037535 109 NGLIALK-NDENGIAFWNPSTKEHLI 133 (216)
Q Consensus 109 ~Gll~~~-~~~~~~~V~NP~T~~~~~ 133 (216)
+|--|+. ...+.+-+|||..+...+
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg~lik 53 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRGALIK 53 (307)
T ss_pred CCCEEEEcCCCceEEeecccccceee
Confidence 4444443 466889999999987664
No 52
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=64.40 E-value=5.4 Score=32.24 Aligned_cols=35 Identities=14% Similarity=0.317 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHhcCCc--------cchhhhccccHhhhhhhcC
Q 037535 3 SLPTDIKIDILSRLPV--------KSLLRFKCMSKSFCSLIAS 37 (216)
Q Consensus 3 ~LP~Dll~eIl~rLp~--------~sl~r~r~VcK~W~~~i~s 37 (216)
.||.+++.+|+.|..- ++.+.+..||+.|+.+..+
T Consensus 47 ~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 47 ALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred cCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 6899999999999862 2578899999999986653
No 53
>PF07861 WND: WisP family N-Terminal Region; InterPro: IPR012503 This family is found at the N terminus of the Tropheryma whipplei WisP family proteins [].
Probab=57.54 E-value=18 Score=26.62 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=26.5
Q ss_pred CCeeEEecccceEEeecCCCcEEEEcCCCccee
Q 037535 100 GRTPIIDSCNGLIALKNDENGIAFWNPSTKEHL 132 (216)
Q Consensus 100 ~~~~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~ 132 (216)
.++.-+.-.||-+|+.++.+..+..+|+||+-.
T Consensus 31 sr~s~VS~~~~~~C~s~~~~~~~~vDP~Tgra~ 63 (263)
T PF07861_consen 31 SRFSSVSFAGGRACLSDTAGSVYTVDPLTGRAV 63 (263)
T ss_pred ceeEEEecCCceEEEecCCCceEEecccccccc
Confidence 445566677899999999999999999996543
No 54
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=57.44 E-value=11 Score=29.53 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHhcCC-ccchhhhccccHhhhhhhcCh
Q 037535 2 ASLPTDIKIDILSRLP-VKSLLRFKCMSKSFCSLIASQ 38 (216)
Q Consensus 2 ~~LP~Dll~eIl~rLp-~~sl~r~r~VcK~W~~~i~s~ 38 (216)
.+||.+++.+||.||| -.+|..+..|-..-..++.+.
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~ 240 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEER 240 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHH
Confidence 4799999999999999 778888888876666665543
No 55
>PF15408 PH_7: Pleckstrin homology domain
Probab=57.04 E-value=5.2 Score=25.27 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=17.5
Q ss_pred hhhhccccHhhhhhhcChhHH
Q 037535 21 LLRFKCMSKSFCSLIASQEFI 41 (216)
Q Consensus 21 l~r~r~VcK~W~~~i~s~~F~ 41 (216)
++..+-|||+|-..+.+|.|+
T Consensus 79 FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 79 FASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhHHHHHHHHHHHhcChhhh
Confidence 445567999999999999885
No 56
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=49.37 E-value=1.3e+02 Score=23.85 Aligned_cols=66 Identities=8% Similarity=0.284 Sum_probs=44.7
Q ss_pred CcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEECCCCcEEEecC
Q 037535 119 NGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNSWRRIRV 194 (216)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~ 194 (216)
..++++|+.+++|..+-.. ... ....+.+. +.=+|+..+.....+.....+..|+..+.+|.....
T Consensus 16 ~~lC~yd~~~~qW~~~g~~---i~G----~V~~l~~~---~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNG---ISG----TVTDLQWA---SNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CEEEEEECCCCEeecCCCC---ceE----EEEEEEEe---cCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence 4688899999999976433 111 23344433 223777776654444467889999999999988873
No 57
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=44.11 E-value=28 Score=22.28 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=14.5
Q ss_pred CCCcEEEEcCCCcceeecCC
Q 037535 117 DENGIAFWNPSTKEHLILPK 136 (216)
Q Consensus 117 ~~~~~~V~NP~T~~~~~LP~ 136 (216)
..++++-+||.|++...|-.
T Consensus 35 ~~GRll~ydp~t~~~~vl~~ 54 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLD 54 (89)
T ss_dssp --EEEEEEETTTTEEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehh
Confidence 35678889999999876643
No 58
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=43.94 E-value=35 Score=17.67 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=15.8
Q ss_pred ecccceEEeecCCCcEEEEcCCC
Q 037535 106 DSCNGLIALKNDENGIAFWNPST 128 (216)
Q Consensus 106 ~s~~Gll~~~~~~~~~~V~NP~T 128 (216)
+-.+|.|.+.+....++.+|+.|
T Consensus 18 ~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 18 AVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp EECTSEEEEE-TTSEEEEEETT-
T ss_pred EEECCEEEEEcCCCEEEEEeCCC
Confidence 34578888777778888888765
No 59
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=43.21 E-value=1.8e+02 Score=23.70 Aligned_cols=39 Identities=8% Similarity=0.096 Sum_probs=28.9
Q ss_pred eeEEecccceEEeecCCCcEEEEcCCCcceeecCCCCCC
Q 037535 102 TPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKYWGD 140 (216)
Q Consensus 102 ~~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~ 140 (216)
...++-.+..|+..+.....+|+|+.|+....+|.+...
T Consensus 69 ~~F~al~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~p 107 (342)
T PF07893_consen 69 MDFFALHGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSP 107 (342)
T ss_pred eEEEEecCCeEEEEcCCCCeEEEECCCCeEeccCCCCCC
Confidence 334444566676666667899999999999999987653
No 60
>PF08683 CAMSAP_CKK: Microtubule-binding calmodulin-regulated spectrin-associated; InterPro: IPR014797 This is the C-terminal domain of a family of eumetazoan proteins collectively defined as calmodulin-regulated spectrin-associated, or CAMSAP, proteins. CAMSAP proteins carry an N-terminal region that includes the CH domain, a central region including a predicted coiled-coil and this C-terminal, or CKK, domain - defined as being present in CAMSAP, KIAA1078 and KIAA1543, The C-terminal domain is the part of the CAMSAP proteins that binds to microtubules. The domain appears to act by producing inhibition of neurite extension, probably by blocking microtubule function. CKK represents a domain that has evolved with the metazoa []. The structure of a murine hypothetical protein from RIKEN cDNA has shown the domain to adopt a mainly beta barrel structure with an associated alpha-helical hairpin. ; PDB: 1UGJ_A.
Probab=42.67 E-value=62 Score=22.16 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=28.6
Q ss_pred eEEeec---CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEE
Q 037535 111 LIALKN---DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVV 164 (216)
Q Consensus 111 ll~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv 164 (216)
+|++.+ ..+.+|.+||.+.+...+-......-.. ......+-||..+++|+.+
T Consensus 51 lILfrd~~~~fRglY~~~~~~~~~~ki~G~gP~~i~~-~mv~~~~KYdSg~K~F~~i 106 (123)
T PF08683_consen 51 LILFRDAGCQFRGLYSYDPESEELVKIYGTGPRVITP-SMVDKFYKYDSGSKQFKPI 106 (123)
T ss_dssp EEEESSSS-SEEEEEEE-TTSS-EEEEESSS-SEE-T-TTEEEEEEEETTTTEEEE-
T ss_pred EEEEecCCCceEEEEEEeCCCCeEEEEEccCcCccCH-HHHHHHhcccccCceeeec
Confidence 456664 2357888999998877773332111111 1145566677777777766
No 61
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=42.32 E-value=81 Score=26.60 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=39.1
Q ss_pred CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeC-C----CCccEEEEEECCCCcEEEe
Q 037535 118 ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRE-N----VEYTEVSVYSLRTNSWRRI 192 (216)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~-~----~~~~~~~vyss~t~~W~~~ 192 (216)
.+++|++|--+.+|..+-.+....++. .......++ + .+..+++.... . .......+|+..+++|..+
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRs----shq~va~~s-~--~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql 169 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRS----SHQAVAVPS-N--ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQL 169 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCc----cceeEEecc-C--eEEEeccccCCcchhhhhhhhheeeeeeccchheee
Confidence 368999999999999873322222221 111111222 2 22223222111 1 3456678999999999988
Q ss_pred cC
Q 037535 193 RV 194 (216)
Q Consensus 193 ~~ 194 (216)
..
T Consensus 170 ~~ 171 (521)
T KOG1230|consen 170 EF 171 (521)
T ss_pred cc
Confidence 73
No 62
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=40.67 E-value=91 Score=19.46 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=21.0
Q ss_pred cCCCCCeEEEEEEEEeeCCCCccEEEEEECCCCcEEEec
Q 037535 155 DAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNSWRRIR 193 (216)
Q Consensus 155 d~~~~~ykvv~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 193 (216)
+..++.|.+...............++|-..+++.|..+.
T Consensus 6 ~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~ 44 (82)
T PF01357_consen 6 KGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMK 44 (82)
T ss_dssp -TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-E
T ss_pred CCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEee
Confidence 333344555544433444566788888888888777664
No 63
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=39.09 E-value=57 Score=16.70 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=15.0
Q ss_pred eEEeecCCCcEEEEcCCCcceee
Q 037535 111 LIALKNDENGIAFWNPSTKEHLI 133 (216)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~ 133 (216)
.+.+......++-.|..||+.+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEE
Confidence 34444556677888888887553
No 64
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=37.18 E-value=2.6e+02 Score=23.74 Aligned_cols=57 Identities=21% Similarity=0.149 Sum_probs=33.5
Q ss_pred cceEEeec-----CCCcEEEEcCCCcceeecCCCCCCCCCcc--ceeeeEEcccCCCCCeEEEE
Q 037535 109 NGLIALKN-----DENGIAFWNPSTKEHLILPKYWGDLKDKV--YMVVDGFGYDAVNDDYKVVR 165 (216)
Q Consensus 109 ~Gll~~~~-----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~--~~~~~~~~~d~~~~~ykvv~ 165 (216)
+.||++.- ..-+++|+|..|++-.+|-.+........ ....+-=||--.++++|++-
T Consensus 238 G~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd 301 (448)
T PF12458_consen 238 GNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFD 301 (448)
T ss_pred CcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeec
Confidence 44666651 33489999999999888765443211111 11233334555677888774
No 65
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=34.22 E-value=1.4e+02 Score=19.60 Aligned_cols=41 Identities=12% Similarity=0.034 Sum_probs=29.6
Q ss_pred CcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEE
Q 037535 119 NGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVH 168 (216)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~ 168 (216)
-+++..+|.+++|...- . ......+..|+..+.|.+.....
T Consensus 9 a~v~~~~~~~~~W~~~~--~-------~~g~v~~~~d~~~~~y~i~~~~~ 49 (104)
T cd00837 9 AQVYTADPSTGKWVPAS--G-------GTGAVSLVKDSTRNTYRIRGVDI 49 (104)
T ss_pred EEEEEECCCCCceEECC--C-------CeEEEEEEEECCCCEEEEEEEec
Confidence 46888999999998532 0 11467788888888888887643
No 66
>PF13018 ESPR: Extended Signal Peptide of Type V secretion system
Probab=33.82 E-value=36 Score=15.94 Aligned_cols=15 Identities=13% Similarity=0.543 Sum_probs=11.6
Q ss_pred EEEcCCCcceeecCC
Q 037535 122 AFWNPSTKEHLILPK 136 (216)
Q Consensus 122 ~V~NP~T~~~~~LP~ 136 (216)
+|||..++.|...+.
T Consensus 7 ~iwn~~~~~~vvvsE 21 (24)
T PF13018_consen 7 LIWNKARGTWVVVSE 21 (24)
T ss_pred EEEECCCCeEEEEee
Confidence 688999998887654
No 67
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=33.64 E-value=57 Score=20.41 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=17.5
Q ss_pred CcEEEecCCCCcc---eecCCCceEECCee
Q 037535 187 NSWRRIRVDFPYY---ILHGWDGKFVDGHV 213 (216)
Q Consensus 187 ~~W~~~~~~~p~~---~~~~~~~v~~~G~l 213 (216)
|.|-+.+ -+|+. +.....||+.||.+
T Consensus 4 G~WvE~~-va~Ya~e~~~l~~~GV~~ngrl 32 (79)
T PF11012_consen 4 GTWVEQG-VAPYAAEEFTLNESGVFRNGRL 32 (79)
T ss_pred eEEEECC-CCCccccEEEECCCcEEECCCE
Confidence 6788887 45543 33455899999864
No 68
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=32.67 E-value=1.5e+02 Score=19.62 Aligned_cols=39 Identities=21% Similarity=0.053 Sum_probs=28.3
Q ss_pred CcEEEEcCCCcc-eeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEE
Q 037535 119 NGIAFWNPSTKE-HLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLV 167 (216)
Q Consensus 119 ~~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 167 (216)
-+++..||-+++ |... . ......+..|...+.|.|....
T Consensus 16 A~v~~~~p~~~~~W~~~-~---------~~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV-K---------GTGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEETTTSESEEES-S---------SEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC-C---------eEEEEEEEEECCCCEEEEEEEE
Confidence 468889999888 8865 1 1145667778888889888764
No 69
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=31.17 E-value=3.8e+02 Score=23.85 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=27.6
Q ss_pred eeEEecccceEEeecCCCcEEEEcCCCcceeec
Q 037535 102 TPIIDSCNGLIALKNDENGIAFWNPSTKEHLIL 134 (216)
Q Consensus 102 ~~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~L 134 (216)
..-+..+||||++.+..+.+=.|+|-+++....
T Consensus 180 ~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 180 VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGT 212 (703)
T ss_pred eeeecCccceEEecccCceEEEecchhhhhhee
Confidence 445678999999998888999999999886653
No 70
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=31.08 E-value=73 Score=15.56 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=16.8
Q ss_pred ceEEeecC-CCcEEEEcCCCcceeec
Q 037535 110 GLIALKND-ENGIAFWNPSTKEHLIL 134 (216)
Q Consensus 110 Gll~~~~~-~~~~~V~NP~T~~~~~L 134 (216)
|+....+. .++.|-+|..|++...-
T Consensus 4 gW~~~~~~~~g~~YY~N~~t~~s~W~ 29 (31)
T PF00397_consen 4 GWEEYFDPDSGRPYYYNHETGESQWE 29 (31)
T ss_dssp TEEEEEETTTSEEEEEETTTTEEESS
T ss_pred CCEEEEcCCCCCEEEEeCCCCCEEeC
Confidence 45544433 47888999999986543
No 71
>PF11900 DUF3420: Domain of unknown function (DUF3420); InterPro: IPR024228 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is about 50 amino acids in length.
Probab=31.04 E-value=36 Score=19.09 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=7.8
Q ss_pred CCCHHHHHHH
Q 037535 3 SLPTDIKIDI 12 (216)
Q Consensus 3 ~LP~Dll~eI 12 (216)
+||.|++.+|
T Consensus 10 ~LP~eVv~kI 19 (49)
T PF11900_consen 10 ELPPEVVKKI 19 (49)
T ss_pred cCCHHHHHHH
Confidence 5888888766
No 72
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=31.03 E-value=38 Score=22.45 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHhcCCccchhhhcccc
Q 037535 2 ASLPTDIKIDILSRLPVKSLLRFKCMS 28 (216)
Q Consensus 2 ~~LP~Dll~eIl~rLp~~sl~r~r~Vc 28 (216)
-++|-+++.-||.++.+..|.+.-.-|
T Consensus 5 G~~py~ll~piL~~~~~~QL~~iE~~n 31 (109)
T PF06881_consen 5 GDVPYHLLRPILEKCSPEQLRRIEDNN 31 (109)
T ss_pred CCCCHHHHHHHHccCCHHHHHHHHHhC
Confidence 468999999999999999988877654
No 73
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=30.95 E-value=2.5e+02 Score=22.89 Aligned_cols=65 Identities=17% Similarity=0.343 Sum_probs=35.5
Q ss_pred CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCC------------CCccEEEEEECC
Q 037535 118 ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVREN------------VEYTEVSVYSLR 185 (216)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~------------~~~~~~~vyss~ 185 (216)
.+++..+||-||+...+-..+. ..-++++. ++|-||.++...+.. ...-.+.|.+..
T Consensus 222 tGev~~vD~~~G~~e~Va~vpG--------~~rGL~f~---G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~ 290 (335)
T TIGR03032 222 RGELGYVDPQAGKFQPVAFLPG--------FTRGLAFA---GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLN 290 (335)
T ss_pred CCEEEEEcCCCCcEEEEEECCC--------CCccccee---CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECC
Confidence 3455555555555444322222 12345554 678888776643221 233567788888
Q ss_pred CC---cEEEec
Q 037535 186 TN---SWRRIR 193 (216)
Q Consensus 186 t~---~W~~~~ 193 (216)
|| .|=..+
T Consensus 291 tG~vv~~l~fe 301 (335)
T TIGR03032 291 SGDVVHWLRFE 301 (335)
T ss_pred CCCEEEEEEeC
Confidence 87 476555
No 74
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=30.30 E-value=41 Score=26.02 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=21.2
Q ss_pred ceEEeecCCCcEEEEcCCCcceeecCC
Q 037535 110 GLIALKNDENGIAFWNPSTKEHLILPK 136 (216)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~~~~LP~ 136 (216)
|++....+...+-+|||.+++|..||.
T Consensus 193 ~l~~~t~Dg~~~g~~~~~~~~W~~l~~ 219 (251)
T PF11932_consen 193 ALYYQTLDGSQAGVWDPATGQWQWLPD 219 (251)
T ss_pred hheeECCCccceeeecCCCCCCeECCH
Confidence 344444466789999999999999987
No 75
>PF06592 DUF1138: Protein of unknown function (DUF1138); InterPro: IPR009515 This family consists of several hypothetical short plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=30.08 E-value=27 Score=21.18 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=10.0
Q ss_pred cEEEEcCCCccee
Q 037535 120 GIAFWNPSTKEHL 132 (216)
Q Consensus 120 ~~~V~NP~T~~~~ 132 (216)
.-+|.||+++|-.
T Consensus 58 pPVvmNPisrqnf 70 (73)
T PF06592_consen 58 PPVVMNPISRQNF 70 (73)
T ss_pred CCeeeccccccce
Confidence 4688999998744
No 76
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.59 E-value=2.5e+02 Score=21.24 Aligned_cols=34 Identities=6% Similarity=0.175 Sum_probs=25.5
Q ss_pred CCCeeEEecccceEEeecCCCcEEEEcCCCccee
Q 037535 99 KGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHL 132 (216)
Q Consensus 99 ~~~~~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~ 132 (216)
+.....+.+++..|++....+.++|||-.+++..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 3445567777888777777889999998887654
No 77
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=28.83 E-value=25 Score=23.33 Aligned_cols=14 Identities=43% Similarity=0.859 Sum_probs=11.4
Q ss_pred CCCCHHHHHHHHhc
Q 037535 2 ASLPTDIKIDILSR 15 (216)
Q Consensus 2 ~~LP~Dll~eIl~r 15 (216)
..||+||-.||+..
T Consensus 7 aaLPeDiR~Evl~~ 20 (108)
T PF14377_consen 7 AALPEDIREEVLAQ 20 (108)
T ss_pred HHCCHHHHHHHHHH
Confidence 46999999999754
No 78
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=28.32 E-value=2.2e+02 Score=25.09 Aligned_cols=65 Identities=11% Similarity=0.194 Sum_probs=35.6
Q ss_pred ccceEEeec-CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEECC
Q 037535 108 CNGLIALKN-DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLR 185 (216)
Q Consensus 108 ~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss~ 185 (216)
.+|-+++.+ +..++.||||+..+.. -........ ..+..-|-|-+++=.|+... ....+.+|+..
T Consensus 60 ~dG~lL~SGSDD~r~ivWd~~~~Kll--hsI~TgHta----NIFsvKFvP~tnnriv~sgA-------gDk~i~lfdl~ 125 (758)
T KOG1310|consen 60 ADGELLASGSDDTRLIVWDPFEYKLL--HSISTGHTA----NIFSVKFVPYTNNRIVLSGA-------GDKLIKLFDLD 125 (758)
T ss_pred CCCCEEeecCCcceEEeecchhccee--eeeeccccc----ceeEEeeeccCCCeEEEecc-------CcceEEEEecc
Confidence 466666654 5678999999954433 333222221 34445555666554444332 24556666664
No 79
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=27.56 E-value=42 Score=18.64 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHHhcCCccc
Q 037535 2 ASLPTDIKIDILSRLPVKS 20 (216)
Q Consensus 2 ~~LP~Dll~eIl~rLp~~s 20 (216)
+.+|+|++.++-.=|+-|+
T Consensus 6 ~~vPedlI~q~q~VLqgks 24 (53)
T PF11547_consen 6 SQVPEDLINQAQVVLQGKS 24 (53)
T ss_dssp GGS-HHHHHHHHHHSTTS-
T ss_pred ccCCHHHHHHHHHHHcCCc
Confidence 3689999999888888765
No 80
>PF12134 PRP8_domainIV: PRP8 domain IV core; InterPro: IPR021983 This domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with PF10597 from PFAM, PF10596 from PFAM, PF10598 from PFAM, PF08083 from PFAM, PF08082 from PFAM, PF01398 from PFAM, PF08084 from PFAM. There is a conserved LILR sequence motif. The domain is a selenomethionine domain in a subunit of the spliceosome. The function of PRP8 domain IV is believed to be interaction with the splicosomal core. ; PDB: 3E66_A 3E9P_A 3SBT_A 3E9O_A 3SBG_A 3LRU_A 3E9L_A 3ENB_A.
Probab=26.48 E-value=56 Score=24.80 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=13.1
Q ss_pred ccceEEeecCCCcEEEEcCCCccee
Q 037535 108 CNGLIALKNDENGIAFWNPSTKEHL 132 (216)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~ 132 (216)
-.|-+-.....+.++++||.||+-.
T Consensus 35 ~eGn~~tkpiNG~ifIfnP~TGqLf 59 (231)
T PF12134_consen 35 FEGNLTTKPINGAIFIFNPRTGQLF 59 (231)
T ss_dssp TTS-EEEEEE-EEEEEE-TTT-EEE
T ss_pred ccCCceeccccceEEEEeCCCCcEE
Confidence 3444444434567888999999854
No 81
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=26.10 E-value=1.7e+02 Score=18.08 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=4.1
Q ss_pred EcCCCcceee
Q 037535 124 WNPSTKEHLI 133 (216)
Q Consensus 124 ~NP~T~~~~~ 133 (216)
++|-||+.++
T Consensus 34 fDPETGqYVe 43 (75)
T PF15232_consen 34 FDPETGQYVE 43 (75)
T ss_pred ecCCCCcEEE
Confidence 3444444443
No 82
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=25.81 E-value=42 Score=21.40 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=13.4
Q ss_pred EEcCCCcceeecCCCC
Q 037535 123 FWNPSTKEHLILPKYW 138 (216)
Q Consensus 123 V~NP~T~~~~~LP~~~ 138 (216)
.-||-||+...+|.-.
T Consensus 60 grNP~Tge~i~i~a~~ 75 (90)
T PRK10753 60 GRNPQTGKEIKIAAAN 75 (90)
T ss_pred ccCCCCCCEEEEcCCc
Confidence 4699999999998754
No 83
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=25.10 E-value=44 Score=21.34 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=12.6
Q ss_pred EEcCCCcceeecCCC
Q 037535 123 FWNPSTKEHLILPKY 137 (216)
Q Consensus 123 V~NP~T~~~~~LP~~ 137 (216)
.-||-||+...+|+-
T Consensus 60 grNP~Tge~i~i~a~ 74 (90)
T PRK10664 60 GRNPQTGKEITIAAA 74 (90)
T ss_pred ccCCCCCCEEEEcCc
Confidence 359999999999864
No 84
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=24.94 E-value=92 Score=14.70 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=17.8
Q ss_pred ceEEeecCCCcEEEEcCCCcceeecCC
Q 037535 110 GLIALKNDENGIAFWNPSTKEHLILPK 136 (216)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~~~~LP~ 136 (216)
|+....+..+..+-+|..|++....+|
T Consensus 3 ~W~~~~~~~g~~yy~n~~t~~s~W~~P 29 (31)
T cd00201 3 GWEERWDPDGRVYYYNHNTKETQWEDP 29 (31)
T ss_pred CCEEEECCCCCEEEEECCCCCEeCCCC
Confidence 445444444778888999988665443
No 85
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=24.27 E-value=67 Score=18.23 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHhcCCcc
Q 037535 2 ASLPTDIKIDILSRLPVK 19 (216)
Q Consensus 2 ~~LP~Dll~eIl~rLp~~ 19 (216)
+-+||++.+.+|.+--+.
T Consensus 1 P~IPD~v~~~yL~~~G~~ 18 (51)
T PF03540_consen 1 PTIPDEVTDYYLERSGFQ 18 (51)
T ss_pred CCCCHHHHHHHHHHCCCC
Confidence 458999999999998755
No 86
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.09 E-value=2.1e+02 Score=23.71 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=45.0
Q ss_pred CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEECCCC--cEEEecCC
Q 037535 118 ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTN--SWRRIRVD 195 (216)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss~t~--~W~~~~~~ 195 (216)
..++..++|.+.+|+.+=..+..... +-+.-. +.-|+..+..+.-..-+......++...+ .|.... +
T Consensus 195 n~ev~sy~p~~n~W~~~G~~pf~~~a-------Gsa~~~--~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~-~ 264 (381)
T COG3055 195 NKEVLSYDPSTNQWRNLGENPFYGNA-------GSAVVI--KGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS-D 264 (381)
T ss_pred cccccccccccchhhhcCcCcccCcc-------Ccceee--cCCeEEEEcceecCCccccceeEEEeccCceeeeecc-C
Confidence 34789999999999988655443221 211111 23377777665445567777888888754 899887 5
Q ss_pred CC
Q 037535 196 FP 197 (216)
Q Consensus 196 ~p 197 (216)
.|
T Consensus 265 lp 266 (381)
T COG3055 265 LP 266 (381)
T ss_pred CC
Confidence 44
No 87
>COG3196 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.01 E-value=63 Score=22.79 Aligned_cols=17 Identities=29% Similarity=0.601 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHhcCCcc
Q 037535 3 SLPTDIKIDILSRLPVK 19 (216)
Q Consensus 3 ~LP~Dll~eIl~rLp~~ 19 (216)
..|+|++.|++.|-|--
T Consensus 83 ~vp~d~~~Ev~ERTPGY 99 (183)
T COG3196 83 DVPEDVTEEVLERTPGY 99 (183)
T ss_pred CChHHHHHHHHhcCCCc
Confidence 57999999999999953
No 88
>PF08793 2C_adapt: 2-cysteine adaptor domain; InterPro: IPR014901 The virus-specific 2-cysteine adaptor is found fused to OTU/A20-like peptidases and S/T protein kinases. The associations to these proteins indicate that they might function as viral adaptors connecting the kinases and OTU/A20 peptidases to specific targets [].
Probab=23.51 E-value=35 Score=17.85 Aligned_cols=10 Identities=30% Similarity=0.338 Sum_probs=7.8
Q ss_pred EcCCCcceee
Q 037535 124 WNPSTKEHLI 133 (216)
Q Consensus 124 ~NP~T~~~~~ 133 (216)
.||+|++.+.
T Consensus 12 ~NP~Tgr~Ik 21 (37)
T PF08793_consen 12 VNPITGRKIK 21 (37)
T ss_pred CCCCCCCcCC
Confidence 6999997664
No 89
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=22.84 E-value=1.1e+02 Score=14.72 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=17.4
Q ss_pred ceEEeecCCCcEEEEcCCCcceeecCC
Q 037535 110 GLIALKNDENGIAFWNPSTKEHLILPK 136 (216)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~~~~LP~ 136 (216)
|+.-..+..+..|.+|..|++....+|
T Consensus 4 gW~~~~~~~g~~yy~n~~t~~s~W~~P 30 (32)
T smart00456 4 GWEERKDPDGRPYYYNHETKETQWEKP 30 (32)
T ss_pred CCEEEECCCCCEEEEECCCCCEEcCCC
Confidence 444444444678888999988665543
No 90
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=22.83 E-value=3.4e+02 Score=20.46 Aligned_cols=68 Identities=15% Similarity=0.136 Sum_probs=39.6
Q ss_pred ecccceEEeec-CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEEC
Q 037535 106 DSCNGLIALKN-DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSL 184 (216)
Q Consensus 106 ~s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss 184 (216)
...+|-|++.+ ...+++.++|.+++...+..+. ..++.++...+ +++... .....+++.
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----------~~G~~~~~~~g--~l~v~~--------~~~~~~~d~ 67 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----------PNGMAFDRPDG--RLYVAD--------SGGIAVVDP 67 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----------EEEEEEECTTS--EEEEEE--------TTCEEEEET
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----------CceEEEEccCC--EEEEEE--------cCceEEEec
Confidence 34466666665 5678999999999886543332 12333332222 333332 234466688
Q ss_pred CCCcEEEec
Q 037535 185 RTNSWRRIR 193 (216)
Q Consensus 185 ~t~~W~~~~ 193 (216)
.++.++.+.
T Consensus 68 ~~g~~~~~~ 76 (246)
T PF08450_consen 68 DTGKVTVLA 76 (246)
T ss_dssp TTTEEEEEE
T ss_pred CCCcEEEEe
Confidence 888777665
No 91
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.45 E-value=3.9e+02 Score=20.99 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=23.4
Q ss_pred EEecccceEEee-cCCCcEEEEcCCCccee---ecCCCCC
Q 037535 104 IIDSCNGLIALK-NDENGIAFWNPSTKEHL---ILPKYWG 139 (216)
Q Consensus 104 ~~~s~~Gll~~~-~~~~~~~V~NP~T~~~~---~LP~~~~ 139 (216)
.++. .|.|.+. -+...++-.||.||+.. .||.+..
T Consensus 218 ~ID~-eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 218 TIDT-EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred eEcc-CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence 4455 5656444 36678999999999865 4675443
No 92
>PF13919 ASXH: Asx homology domain
Probab=22.28 E-value=71 Score=22.36 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHhcCCccch
Q 037535 3 SLPTDIKIDILSRLPVKSL 21 (216)
Q Consensus 3 ~LP~Dll~eIl~rLp~~sl 21 (216)
.||.+-..+||..||..+.
T Consensus 46 ~L~~eeq~eLl~LLP~~D~ 64 (138)
T PF13919_consen 46 CLPEEEQQELLKLLPEVDR 64 (138)
T ss_pred cCCHHHHHHHHHhCCCCCc
Confidence 5899999999999997654
No 93
>KOG1852 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=22.03 E-value=52 Score=23.48 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=23.4
Q ss_pred hcCCcc--chhhhccccHhhhhhhcChhHHHH
Q 037535 14 SRLPVK--SLLRFKCMSKSFCSLIASQEFIKI 43 (216)
Q Consensus 14 ~rLp~~--sl~r~r~VcK~W~~~i~s~~F~~~ 43 (216)
+|+..| ++.++..||++-.++.+...|.++
T Consensus 144 srvsikessv~klgsvcrrvyrifsha~fhhr 175 (223)
T KOG1852|consen 144 SRVSIKESSVAKLGSVCRRVYRIFSHAYFHHR 175 (223)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 678999999999999888777644
No 94
>PF10902 DUF2693: Protein of unknown function (DUF2693); InterPro: IPR024401 This family of proteins is found in bacteria and bacteriophages. Its function is unknown.
Probab=20.72 E-value=1.2e+02 Score=19.23 Aligned_cols=20 Identities=20% Similarity=0.546 Sum_probs=16.6
Q ss_pred CCccEEEEEECCCCcEEEec
Q 037535 174 VEYTEVSVYSLRTNSWRRIR 193 (216)
Q Consensus 174 ~~~~~~~vyss~t~~W~~~~ 193 (216)
.....+.+|+.+.+.||...
T Consensus 46 es~~s~~yfDve~~~WRSFk 65 (83)
T PF10902_consen 46 ESTTSVRYFDVEKKGWRSFK 65 (83)
T ss_pred CCcceEEEEEeccCceeeee
Confidence 45567889999999999876
Done!