Query 037537
Match_columns 677
No_of_seqs 756 out of 4037
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 13:15:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 4E-133 9E-138 1140.8 75.3 669 1-675 154-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 7E-120 1E-124 1008.1 66.9 580 94-677 85-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.6E-82 3.5E-87 724.9 64.6 645 1-673 53-747 (857)
4 PLN03081 pentatricopeptide (PP 100.0 2.9E-69 6.3E-74 601.6 51.4 462 1-469 89-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 1.7E-66 3.8E-71 580.9 56.0 506 30-555 366-915 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 3.5E-64 7.5E-69 562.4 51.4 491 2-498 373-907 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.5E-28 9.9E-33 282.9 58.1 531 7-551 303-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2E-27 4.4E-32 277.4 59.0 526 8-549 270-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 4.1E-31 8.9E-36 216.9 7.5 102 556-667 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 1E-18 2.3E-23 205.2 56.6 514 4-549 67-700 (1157)
11 PRK11447 cellulose synthase su 99.9 4.8E-18 1E-22 199.6 54.4 532 5-549 34-666 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 5.2E-19 1.1E-23 176.0 30.4 378 97-539 117-509 (966)
13 PRK11788 tetratricopeptide rep 99.9 2.2E-19 4.8E-24 188.0 28.7 302 204-558 43-356 (389)
14 PRK09782 bacteriophage N4 rece 99.8 1.3E-15 2.8E-20 171.2 55.2 519 11-550 56-707 (987)
15 PRK11788 tetratricopeptide rep 99.8 2.5E-18 5.4E-23 180.1 27.2 293 9-335 45-354 (389)
16 PRK09782 bacteriophage N4 rece 99.8 3.6E-15 7.9E-20 167.7 48.7 522 2-551 81-742 (987)
17 TIGR00990 3a0801s09 mitochondr 99.8 4.5E-16 9.7E-21 171.8 39.7 417 37-549 130-571 (615)
18 KOG4626 O-linked N-acetylgluco 99.8 1.1E-16 2.4E-21 159.6 29.9 417 69-548 52-484 (966)
19 PRK10049 pgaA outer membrane p 99.8 1.5E-14 3.3E-19 162.6 41.3 392 101-549 20-456 (765)
20 PRK14574 hmsH outer membrane p 99.7 5.1E-14 1.1E-18 155.3 42.9 412 43-549 43-513 (822)
21 KOG4422 Uncharacterized conser 99.7 3.4E-14 7.5E-19 136.2 35.7 434 9-497 125-587 (625)
22 PRK15174 Vi polysaccharide exp 99.7 1.1E-14 2.3E-19 160.4 35.0 316 72-463 49-380 (656)
23 PRK15174 Vi polysaccharide exp 99.7 3.2E-14 7E-19 156.6 37.4 316 169-497 47-378 (656)
24 TIGR00990 3a0801s09 mitochondr 99.7 4.6E-14 1E-18 155.9 38.7 406 7-497 135-568 (615)
25 PRK10049 pgaA outer membrane p 99.7 5.7E-14 1.2E-18 158.0 39.2 400 6-472 22-461 (765)
26 KOG2002 TPR-containing nuclear 99.7 5.1E-13 1.1E-17 141.0 37.4 502 14-552 251-801 (1018)
27 KOG4422 Uncharacterized conser 99.7 2E-12 4.3E-17 124.3 35.2 422 96-552 116-593 (625)
28 PRK14574 hmsH outer membrane p 99.6 1.1E-11 2.5E-16 136.9 42.4 423 8-464 43-513 (822)
29 KOG2002 TPR-containing nuclear 99.6 1.8E-11 3.9E-16 129.6 37.9 454 50-551 146-677 (1018)
30 KOG0495 HAT repeat protein [RN 99.5 1.8E-09 4E-14 109.6 45.0 445 74-563 415-892 (913)
31 KOG4318 Bicoid mRNA stability 99.5 1.5E-11 3.3E-16 128.4 30.6 509 20-559 11-603 (1088)
32 KOG2076 RNA polymerase III tra 99.5 9.6E-09 2.1E-13 108.7 44.9 483 11-496 151-730 (895)
33 KOG4318 Bicoid mRNA stability 99.4 7.8E-11 1.7E-15 123.3 27.8 438 1-463 27-593 (1088)
34 PF13429 TPR_15: Tetratricopep 99.4 1.9E-12 4E-17 128.5 12.1 155 374-547 115-275 (280)
35 KOG1915 Cell cycle control pro 99.4 9.8E-09 2.1E-13 100.6 35.8 411 45-498 84-534 (677)
36 KOG2003 TPR repeat-containing 99.4 1.2E-10 2.7E-15 112.7 22.6 457 7-497 209-719 (840)
37 KOG0495 HAT repeat protein [RN 99.4 1.6E-07 3.4E-12 95.9 44.8 508 13-561 265-792 (913)
38 PRK10747 putative protoheme IX 99.4 5E-10 1.1E-14 116.3 27.9 278 177-497 97-387 (398)
39 COG2956 Predicted N-acetylgluc 99.4 6.4E-10 1.4E-14 103.8 24.7 308 208-570 47-368 (389)
40 KOG1126 DNA-binding cell divis 99.3 2.1E-10 4.5E-15 117.3 20.6 282 211-550 334-621 (638)
41 PRK10747 putative protoheme IX 99.3 8.3E-10 1.8E-14 114.7 25.9 220 172-462 161-388 (398)
42 PF13041 PPR_2: PPR repeat fam 99.3 6.2E-12 1.3E-16 87.4 6.5 50 398-447 1-50 (50)
43 KOG2076 RNA polymerase III tra 99.3 3.5E-09 7.5E-14 111.9 28.8 318 173-547 149-510 (895)
44 PF13041 PPR_2: PPR repeat fam 99.3 6E-12 1.3E-16 87.5 5.7 50 194-243 1-50 (50)
45 TIGR00540 hemY_coli hemY prote 99.3 1.9E-09 4.2E-14 112.6 27.3 281 209-497 97-396 (409)
46 PF13429 TPR_15: Tetratricopep 99.3 1.3E-11 2.7E-16 122.5 9.1 121 373-496 150-273 (280)
47 KOG0547 Translocase of outer m 99.3 4.5E-09 9.7E-14 103.5 26.1 213 277-547 337-564 (606)
48 COG2956 Predicted N-acetylgluc 99.2 5.5E-09 1.2E-13 97.7 24.2 286 12-330 48-349 (389)
49 KOG2003 TPR repeat-containing 99.2 2.2E-08 4.8E-13 97.4 29.0 200 313-534 504-708 (840)
50 KOG1155 Anaphase-promoting com 99.2 1.5E-07 3.2E-12 92.5 33.5 165 369-545 364-532 (559)
51 KOG2047 mRNA splicing factor [ 99.2 2.9E-07 6.3E-12 93.9 36.7 435 34-478 102-629 (835)
52 TIGR00540 hemY_coli hemY prote 99.2 1.1E-08 2.4E-13 106.9 27.6 283 10-326 95-397 (409)
53 KOG1155 Anaphase-promoting com 99.2 2E-08 4.4E-13 98.3 25.2 161 369-548 330-494 (559)
54 KOG2047 mRNA splicing factor [ 99.2 4.1E-06 8.8E-11 85.8 41.5 399 98-535 250-709 (835)
55 KOG1126 DNA-binding cell divis 99.1 4.7E-09 1E-13 107.6 19.6 278 14-333 334-625 (638)
56 COG3071 HemY Uncharacterized e 99.1 8.8E-08 1.9E-12 92.6 26.6 278 209-497 97-387 (400)
57 KOG1915 Cell cycle control pro 99.1 1.3E-05 2.9E-10 79.2 40.2 441 11-464 85-585 (677)
58 TIGR02521 type_IV_pilW type IV 99.1 2.5E-08 5.5E-13 95.9 21.0 196 299-548 32-231 (234)
59 COG3071 HemY Uncharacterized e 99.0 2.4E-07 5.2E-12 89.7 25.8 288 12-333 97-395 (400)
60 KOG0547 Translocase of outer m 99.0 9.7E-07 2.1E-11 87.4 30.3 392 8-463 124-565 (606)
61 KOG3785 Uncharacterized conser 99.0 4.6E-06 1E-10 79.3 30.8 435 42-550 30-491 (557)
62 KOG1156 N-terminal acetyltrans 99.0 1E-05 2.2E-10 83.3 35.5 456 36-546 10-508 (700)
63 KOG3616 Selective LIM binding 99.0 3.9E-06 8.5E-11 86.8 32.7 419 9-496 454-907 (1636)
64 KOG1173 Anaphase-promoting com 99.0 5.1E-06 1.1E-10 84.1 32.7 454 3-474 20-525 (611)
65 KOG1173 Anaphase-promoting com 98.9 1.1E-06 2.4E-11 88.7 27.5 479 36-547 18-516 (611)
66 TIGR02521 type_IV_pilW type IV 98.9 4.6E-08 9.9E-13 94.1 17.6 165 369-549 31-198 (234)
67 KOG4162 Predicted calmodulin-b 98.9 5.9E-06 1.3E-10 86.6 31.9 426 63-550 321-784 (799)
68 KOG2376 Signal recognition par 98.9 1.1E-05 2.5E-10 82.0 32.9 443 6-500 19-520 (652)
69 PRK12370 invasion protein regu 98.9 1.9E-07 4.1E-12 101.6 22.5 244 246-550 276-536 (553)
70 PRK12370 invasion protein regu 98.9 1.5E-07 3.3E-12 102.3 21.1 209 283-549 277-502 (553)
71 KOG1840 Kinesin light chain [C 98.9 2.8E-07 6.1E-12 95.7 21.3 203 304-547 247-477 (508)
72 KOG0985 Vesicle coat protein c 98.9 0.00011 2.5E-09 79.1 39.6 134 400-546 1104-1246(1666)
73 KOG1840 Kinesin light chain [C 98.8 1.1E-07 2.5E-12 98.5 16.6 228 3-259 203-478 (508)
74 KOG1129 TPR repeat-containing 98.8 1.4E-07 3.1E-12 88.4 15.1 228 268-550 225-459 (478)
75 KOG0985 Vesicle coat protein c 98.8 3.9E-05 8.5E-10 82.5 34.7 432 3-497 842-1305(1666)
76 KOG1174 Anaphase-promoting com 98.8 3.1E-05 6.7E-10 75.4 30.9 357 64-428 96-499 (564)
77 KOG3616 Selective LIM binding 98.8 1.8E-05 4E-10 82.0 30.8 421 39-546 737-1181(1636)
78 KOG1174 Anaphase-promoting com 98.8 7.4E-05 1.6E-09 72.9 32.2 358 164-549 97-500 (564)
79 PF12569 NARP1: NMDA receptor- 98.7 0.00029 6.4E-09 74.4 39.0 276 41-327 11-333 (517)
80 KOG1156 N-terminal acetyltrans 98.7 4.7E-05 1E-09 78.5 31.5 437 9-497 17-508 (700)
81 PF12569 NARP1: NMDA receptor- 98.7 1.1E-05 2.4E-10 85.0 28.2 134 404-548 198-333 (517)
82 KOG3785 Uncharacterized conser 98.7 4E-05 8.7E-10 73.1 28.3 445 6-475 29-498 (557)
83 PRK11189 lipoprotein NlpI; Pro 98.7 1.2E-06 2.6E-11 87.1 19.4 220 313-550 40-266 (296)
84 PF04733 Coatomer_E: Coatomer 98.7 6.2E-07 1.3E-11 87.9 16.7 151 377-549 110-265 (290)
85 KOG3617 WD40 and TPR repeat-co 98.7 0.00032 7E-09 74.2 36.4 316 42-396 808-1172(1416)
86 KOG4162 Predicted calmodulin-b 98.7 0.00014 3E-09 76.7 33.4 440 8-497 293-780 (799)
87 KOG1129 TPR repeat-containing 98.7 8E-07 1.7E-11 83.5 14.9 127 200-331 227-356 (478)
88 COG3063 PilF Tfp pilus assembl 98.7 1.2E-06 2.6E-11 78.8 15.3 164 371-551 37-204 (250)
89 PRK11189 lipoprotein NlpI; Pro 98.6 1.1E-05 2.4E-10 80.2 23.5 88 37-124 67-160 (296)
90 PF12854 PPR_1: PPR repeat 98.6 8.2E-08 1.8E-12 59.8 4.3 33 466-498 2-34 (34)
91 KOG2376 Signal recognition par 98.6 0.0012 2.5E-08 67.8 35.6 408 40-503 18-491 (652)
92 KOG4340 Uncharacterized conser 98.5 0.00032 6.9E-09 65.6 26.6 345 36-426 12-372 (459)
93 cd05804 StaR_like StaR_like; a 98.5 0.0004 8.6E-09 71.7 31.1 204 303-550 119-337 (355)
94 PF04733 Coatomer_E: Coatomer 98.5 2.6E-06 5.7E-11 83.5 13.7 245 177-464 14-265 (290)
95 KOG4340 Uncharacterized conser 98.4 0.00014 2.9E-09 68.0 22.5 308 99-460 13-335 (459)
96 PF12854 PPR_1: PPR repeat 98.4 3.5E-07 7.6E-12 56.9 3.9 32 430-461 2-33 (34)
97 KOG1127 TPR repeat-containing 98.4 0.00055 1.2E-08 74.2 29.5 187 353-546 801-993 (1238)
98 KOG3617 WD40 and TPR repeat-co 98.4 0.0007 1.5E-08 71.7 29.1 383 33-497 725-1171(1416)
99 COG3063 PilF Tfp pilus assembl 98.4 5.5E-05 1.2E-09 68.3 18.5 186 270-496 39-232 (250)
100 PRK10370 formate-dependent nit 98.4 1.5E-05 3.3E-10 73.7 15.6 150 374-550 21-174 (198)
101 cd05804 StaR_like StaR_like; a 98.4 0.00051 1.1E-08 70.8 28.9 291 167-497 9-333 (355)
102 TIGR03302 OM_YfiO outer membra 98.3 2E-05 4.2E-10 76.0 15.6 163 369-549 33-232 (235)
103 PRK15359 type III secretion sy 98.3 1.8E-05 3.8E-10 69.2 13.2 123 390-531 14-137 (144)
104 PRK04841 transcriptional regul 98.3 0.0054 1.2E-07 72.0 37.5 261 172-464 460-760 (903)
105 KOG1070 rRNA processing protei 98.2 0.00013 2.8E-09 81.5 21.3 230 20-251 1445-1691(1710)
106 TIGR00756 PPR pentatricopeptid 98.2 2.3E-06 5E-11 54.2 4.7 35 401-435 1-35 (35)
107 KOG0548 Molecular co-chaperone 98.2 0.0057 1.2E-07 62.4 30.7 98 8-106 11-114 (539)
108 TIGR00756 PPR pentatricopeptid 98.2 2.2E-06 4.7E-11 54.3 4.5 35 97-131 1-35 (35)
109 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 9.1E-05 2E-09 75.2 17.8 126 371-500 171-297 (395)
110 KOG0624 dsRNA-activated protei 98.2 0.0064 1.4E-07 58.3 28.2 309 71-463 44-369 (504)
111 PRK04841 transcriptional regul 98.2 0.0055 1.2E-07 71.9 35.1 334 174-550 384-761 (903)
112 KOG1128 Uncharacterized conser 98.2 4.5E-05 9.8E-10 79.8 15.1 223 261-549 393-616 (777)
113 KOG1128 Uncharacterized conser 98.2 6E-05 1.3E-09 78.9 15.9 226 202-480 404-632 (777)
114 KOG1125 TPR repeat-containing 98.1 0.00016 3.4E-09 73.9 17.7 248 206-494 295-565 (579)
115 KOG1127 TPR repeat-containing 98.1 0.0013 2.9E-08 71.4 25.0 176 50-260 474-659 (1238)
116 KOG0624 dsRNA-activated protei 98.1 0.012 2.5E-07 56.6 27.7 88 171-261 45-136 (504)
117 KOG1914 mRNA cleavage and poly 98.1 0.019 4E-07 58.8 36.2 176 315-492 347-531 (656)
118 PRK15359 type III secretion sy 98.1 7E-05 1.5E-09 65.5 12.5 109 420-550 13-122 (144)
119 PF13812 PPR_3: Pentatricopept 98.1 6.6E-06 1.4E-10 51.6 4.3 34 96-129 1-34 (34)
120 KOG1070 rRNA processing protei 98.0 0.00068 1.5E-08 76.0 21.9 223 195-456 1457-1692(1710)
121 PF13812 PPR_3: Pentatricopept 98.0 8.2E-06 1.8E-10 51.2 4.5 33 401-433 2-34 (34)
122 TIGR03302 OM_YfiO outer membra 98.0 0.00032 6.8E-09 67.6 16.5 125 372-498 73-230 (235)
123 PRK15179 Vi polysaccharide bio 98.0 0.00074 1.6E-08 74.3 20.3 127 400-546 86-214 (694)
124 TIGR02552 LcrH_SycD type III s 97.9 0.00015 3.2E-09 62.9 12.0 110 422-550 5-115 (135)
125 KOG1914 mRNA cleavage and poly 97.9 0.039 8.5E-07 56.5 31.5 126 369-497 366-498 (656)
126 COG4783 Putative Zn-dependent 97.9 0.0015 3.3E-08 65.8 18.9 137 378-550 315-455 (484)
127 PLN02789 farnesyltranstransfer 97.9 0.0015 3.2E-08 65.1 18.8 182 313-548 51-249 (320)
128 KOG1125 TPR repeat-containing 97.8 0.001 2.2E-08 68.2 17.3 212 44-259 295-526 (579)
129 COG5010 TadD Flp pilus assembl 97.8 0.0011 2.3E-08 61.5 15.9 153 69-256 70-227 (257)
130 PF01535 PPR: PPR repeat; Int 97.8 2.4E-05 5.2E-10 47.7 3.6 31 401-431 1-31 (31)
131 PF01535 PPR: PPR repeat; Int 97.8 2.4E-05 5.3E-10 47.7 3.5 31 97-127 1-31 (31)
132 COG5010 TadD Flp pilus assembl 97.8 0.0019 4.2E-08 59.8 16.6 123 369-495 100-226 (257)
133 PRK10370 formate-dependent nit 97.8 0.00045 9.7E-09 64.0 12.8 112 382-497 52-170 (198)
134 COG4783 Putative Zn-dependent 97.8 0.008 1.7E-07 60.8 22.0 127 402-548 308-436 (484)
135 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00052 1.1E-08 69.8 14.1 122 405-547 174-295 (395)
136 PF09976 TPR_21: Tetratricopep 97.7 0.0016 3.4E-08 57.1 15.2 124 403-545 15-143 (145)
137 PRK14720 transcript cleavage f 97.7 0.012 2.5E-07 65.9 24.8 118 369-531 150-268 (906)
138 KOG2053 Mitochondrial inherita 97.7 0.13 2.7E-06 56.2 37.0 126 10-139 20-152 (932)
139 KOG0548 Molecular co-chaperone 97.7 0.014 3.1E-07 59.6 22.0 360 173-549 11-455 (539)
140 PLN02789 farnesyltranstransfer 97.7 0.0094 2E-07 59.5 20.8 202 6-243 44-267 (320)
141 PRK14720 transcript cleavage f 97.6 0.0072 1.6E-07 67.5 21.4 215 162-411 29-268 (906)
142 KOG3081 Vesicle coat complex C 97.6 0.018 4E-07 53.6 19.9 172 254-464 96-271 (299)
143 KOG3081 Vesicle coat complex C 97.5 0.0093 2E-07 55.4 17.3 152 375-548 114-270 (299)
144 PRK15179 Vi polysaccharide bio 97.5 0.0081 1.8E-07 66.3 20.1 138 298-475 86-226 (694)
145 TIGR02552 LcrH_SycD type III s 97.5 0.0022 4.7E-08 55.5 12.5 93 402-497 19-111 (135)
146 PF09976 TPR_21: Tetratricopep 97.5 0.0021 4.6E-08 56.3 12.5 124 370-497 13-144 (145)
147 PF12895 Apc3: Anaphase-promot 97.4 0.00033 7.1E-09 54.8 5.8 82 448-545 2-83 (84)
148 PRK15363 pathogenicity island 97.3 0.0053 1.1E-07 53.0 12.6 95 437-549 37-132 (157)
149 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0052 1.1E-07 51.5 12.4 94 402-497 4-102 (119)
150 cd00189 TPR Tetratricopeptide 97.3 0.0029 6.3E-08 50.1 9.9 90 403-495 3-92 (100)
151 KOG3060 Uncharacterized conser 97.3 0.023 4.9E-07 52.5 16.1 161 371-549 54-220 (289)
152 PF08579 RPM2: Mitochondrial r 97.2 0.0062 1.3E-07 48.7 10.6 80 403-483 28-116 (120)
153 KOG0553 TPR repeat-containing 97.2 0.0033 7.2E-08 59.5 10.7 101 410-529 91-192 (304)
154 cd00189 TPR Tetratricopeptide 97.2 0.0052 1.1E-07 48.6 10.6 92 371-463 2-96 (100)
155 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0066 1.4E-07 50.9 11.5 100 436-550 3-106 (119)
156 PF06239 ECSIT: Evolutionarily 97.1 0.0069 1.5E-07 54.9 11.3 117 229-362 45-168 (228)
157 PF04840 Vps16_C: Vps16, C-ter 97.1 0.18 3.9E-06 50.3 22.6 123 166-308 179-301 (319)
158 PLN03088 SGT1, suppressor of 97.1 0.0098 2.1E-07 60.8 14.1 87 407-497 9-96 (356)
159 PLN03088 SGT1, suppressor of 97.1 0.01 2.3E-07 60.6 14.0 96 375-474 8-106 (356)
160 KOG2041 WD40 repeat protein [G 97.1 0.23 5.1E-06 52.5 23.2 57 262-325 848-904 (1189)
161 PF14938 SNAP: Soluble NSF att 97.1 0.039 8.5E-07 54.5 17.6 127 172-298 122-268 (282)
162 PF13432 TPR_16: Tetratricopep 97.1 0.0014 3E-08 48.2 5.5 58 477-549 3-60 (65)
163 CHL00033 ycf3 photosystem I as 97.0 0.023 4.9E-07 51.3 14.4 109 400-519 35-153 (168)
164 PF13414 TPR_11: TPR repeat; P 97.0 0.0014 3.1E-08 48.8 5.3 64 470-548 2-66 (69)
165 PRK02603 photosystem I assembl 97.0 0.023 5.1E-07 51.4 14.1 122 400-535 35-166 (172)
166 PF05843 Suf: Suppressor of fo 97.0 0.0045 9.7E-08 60.9 10.0 123 2-125 4-136 (280)
167 PF08579 RPM2: Mitochondrial r 97.0 0.0057 1.2E-07 49.0 8.4 78 201-278 30-116 (120)
168 KOG2041 WD40 repeat protein [G 97.0 0.52 1.1E-05 50.0 24.6 84 31-119 689-783 (1189)
169 PF10037 MRP-S27: Mitochondria 97.0 0.0098 2.1E-07 61.0 12.3 116 164-279 66-186 (429)
170 PF13431 TPR_17: Tetratricopep 97.0 0.00071 1.5E-08 42.0 2.6 32 509-540 2-33 (34)
171 PF10037 MRP-S27: Mitochondria 96.9 0.0069 1.5E-07 62.0 10.9 67 100-166 107-175 (429)
172 KOG1538 Uncharacterized conser 96.9 0.66 1.4E-05 48.8 24.7 140 374-551 708-848 (1081)
173 PRK02603 photosystem I assembl 96.9 0.015 3.2E-07 52.7 12.1 97 436-548 36-148 (172)
174 KOG3060 Uncharacterized conser 96.9 0.26 5.6E-06 45.9 19.3 179 313-497 26-217 (289)
175 PF05843 Suf: Suppressor of fo 96.8 0.016 3.5E-07 57.0 12.5 131 402-548 3-135 (280)
176 PF12895 Apc3: Anaphase-promot 96.8 0.003 6.6E-08 49.3 6.0 80 413-496 2-83 (84)
177 PRK15363 pathogenicity island 96.8 0.018 3.9E-07 49.8 10.9 98 371-469 37-137 (157)
178 KOG2796 Uncharacterized conser 96.8 0.054 1.2E-06 50.3 14.3 178 352-550 124-316 (366)
179 PF06239 ECSIT: Evolutionarily 96.8 0.012 2.5E-07 53.4 9.6 98 389-487 34-154 (228)
180 PRK10153 DNA-binding transcrip 96.7 0.054 1.2E-06 58.0 15.7 137 396-550 333-483 (517)
181 CHL00033 ycf3 photosystem I as 96.6 0.021 4.5E-07 51.5 10.8 96 435-546 35-139 (168)
182 PF13371 TPR_9: Tetratricopept 96.6 0.0051 1.1E-07 46.4 5.6 57 479-550 3-59 (73)
183 COG4235 Cytochrome c biogenesi 96.6 0.033 7.2E-07 53.2 11.8 103 432-551 153-258 (287)
184 PF04840 Vps16_C: Vps16, C-ter 96.5 0.99 2.1E-05 45.1 29.1 71 270-348 181-251 (319)
185 PF12688 TPR_5: Tetratrico pep 96.5 0.06 1.3E-06 44.8 11.9 92 406-497 7-101 (120)
186 PF14559 TPR_19: Tetratricopep 96.5 0.012 2.5E-07 43.6 6.9 48 447-497 3-51 (68)
187 PF07079 DUF1347: Protein of u 96.4 1.3 2.8E-05 44.9 32.9 424 45-545 17-520 (549)
188 PF14559 TPR_19: Tetratricopep 96.4 0.015 3.3E-07 43.0 6.8 63 411-477 2-64 (68)
189 KOG2280 Vacuolar assembly/sort 96.3 2 4.4E-05 46.3 25.3 298 164-497 471-796 (829)
190 PF14938 SNAP: Soluble NSF att 96.3 0.24 5.2E-06 48.9 16.5 113 168-295 98-224 (282)
191 KOG2280 Vacuolar assembly/sort 96.2 2.3 5E-05 46.0 26.4 120 27-146 425-561 (829)
192 PF07079 DUF1347: Protein of u 96.2 1.8 3.9E-05 44.0 29.0 59 411-477 473-531 (549)
193 KOG2053 Mitochondrial inherita 96.1 2.9 6.4E-05 46.2 39.4 98 46-146 21-125 (932)
194 PRK10153 DNA-binding transcrip 96.1 0.11 2.4E-06 55.6 13.9 126 369-497 337-479 (517)
195 PF13432 TPR_16: Tetratricopep 96.0 0.03 6.5E-07 41.0 6.9 57 407-464 4-60 (65)
196 KOG0553 TPR repeat-containing 96.0 0.04 8.6E-07 52.5 8.7 93 379-476 91-187 (304)
197 PF03704 BTAD: Bacterial trans 95.9 0.09 2E-06 46.0 10.6 67 473-554 64-135 (146)
198 PF13414 TPR_11: TPR repeat; P 95.9 0.034 7.4E-07 41.2 6.6 64 399-463 2-66 (69)
199 PF12688 TPR_5: Tetratrico pep 95.8 0.15 3.2E-06 42.5 10.5 59 202-260 7-67 (120)
200 KOG1538 Uncharacterized conser 95.7 0.56 1.2E-05 49.4 16.3 78 5-90 604-683 (1081)
201 PF12921 ATP13: Mitochondrial 95.7 0.11 2.5E-06 43.6 9.7 95 370-480 3-97 (126)
202 KOG0550 Molecular chaperone (D 95.5 0.77 1.7E-05 45.9 15.7 149 381-549 181-350 (486)
203 PRK10866 outer membrane biogen 95.5 0.94 2E-05 43.4 16.5 173 308-547 42-239 (243)
204 PRK10803 tol-pal system protei 95.5 0.17 3.7E-06 49.0 11.3 97 437-549 145-246 (263)
205 PRK10866 outer membrane biogen 95.5 1.1 2.4E-05 42.9 16.8 173 172-394 40-237 (243)
206 PRK10803 tol-pal system protei 95.3 0.25 5.5E-06 47.8 11.8 93 403-497 146-243 (263)
207 PF13428 TPR_14: Tetratricopep 95.3 0.026 5.7E-07 37.4 3.5 42 472-528 2-43 (44)
208 PF13424 TPR_12: Tetratricopep 95.3 0.032 7E-07 42.6 4.6 70 471-548 5-74 (78)
209 PF03704 BTAD: Bacterial trans 95.2 0.18 3.8E-06 44.2 9.7 69 404-473 66-138 (146)
210 KOG2796 Uncharacterized conser 95.1 0.27 5.9E-06 45.9 10.6 133 4-138 182-326 (366)
211 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.079 1.7E-06 54.0 8.0 65 470-549 74-141 (453)
212 PRK15331 chaperone protein Sic 95.0 1.5 3.3E-05 38.4 14.3 87 444-548 46-133 (165)
213 KOG3941 Intermediate in Toll s 94.9 0.21 4.6E-06 47.0 9.3 109 388-497 53-185 (406)
214 PF13371 TPR_9: Tetratricopept 94.7 0.22 4.8E-06 37.3 8.0 55 409-464 4-58 (73)
215 KOG3941 Intermediate in Toll s 94.7 0.44 9.6E-06 45.0 10.9 100 245-361 86-187 (406)
216 KOG1130 Predicted G-alpha GTPa 94.6 0.47 1E-05 47.2 11.4 138 401-548 196-343 (639)
217 COG3898 Uncharacterized membra 94.5 5.7 0.00012 39.7 26.0 209 280-497 168-389 (531)
218 COG4700 Uncharacterized protei 94.5 3.3 7.1E-05 36.9 16.2 134 398-548 87-221 (251)
219 KOG0543 FKBP-type peptidyl-pro 94.2 0.61 1.3E-05 46.7 11.4 83 472-595 258-340 (397)
220 COG4235 Cytochrome c biogenesi 94.2 0.99 2.1E-05 43.5 12.4 97 366-463 153-255 (287)
221 PF13424 TPR_12: Tetratricopep 93.9 0.2 4.4E-06 38.1 6.3 61 437-497 7-72 (78)
222 PF12921 ATP13: Mitochondrial 93.8 0.35 7.5E-06 40.7 7.8 29 95-123 1-29 (126)
223 KOG2114 Vacuolar assembly/sort 93.7 13 0.00029 41.0 23.6 168 6-190 341-516 (933)
224 PF04053 Coatomer_WDAD: Coatom 93.7 1.2 2.6E-05 46.7 13.3 158 7-221 269-427 (443)
225 PF04053 Coatomer_WDAD: Coatom 93.7 1.2 2.6E-05 46.7 13.2 155 75-293 271-428 (443)
226 COG4700 Uncharacterized protei 93.6 5 0.00011 35.8 15.0 113 374-491 94-213 (251)
227 PRK15331 chaperone protein Sic 93.6 0.26 5.7E-06 43.0 6.8 85 378-463 46-133 (165)
228 PRK09687 putative lyase; Provi 93.5 8.4 0.00018 37.8 25.0 245 56-344 28-277 (280)
229 PF08631 SPO22: Meiosis protei 93.4 8.7 0.00019 37.8 20.3 122 374-496 126-271 (278)
230 COG5107 RNA14 Pre-mRNA 3'-end 93.3 11 0.00023 38.6 31.1 124 369-497 397-528 (660)
231 PF13525 YfiO: Outer membrane 93.3 1.3 2.8E-05 41.2 11.7 144 172-334 13-174 (203)
232 smart00299 CLH Clathrin heavy 93.2 3 6.4E-05 36.0 13.2 107 373-496 11-121 (140)
233 PF13170 DUF4003: Protein of u 93.2 8.4 0.00018 38.1 17.5 150 298-479 60-225 (297)
234 PF13525 YfiO: Outer membrane 93.1 1.4 3E-05 41.0 11.6 25 525-549 146-170 (203)
235 COG3118 Thioredoxin domain-con 93.0 2.1 4.6E-05 41.1 12.3 124 408-549 142-265 (304)
236 KOG1920 IkappaB kinase complex 93.0 22 0.00047 41.2 21.8 29 229-258 789-819 (1265)
237 PF04184 ST7: ST7 protein; In 92.9 8.2 0.00018 40.1 17.0 73 404-478 263-338 (539)
238 PLN03098 LPA1 LOW PSII ACCUMUL 92.6 0.92 2E-05 46.5 10.0 65 161-225 72-141 (453)
239 smart00299 CLH Clathrin heavy 92.6 4.1 9E-05 35.1 13.2 42 4-46 12-53 (140)
240 PF09205 DUF1955: Domain of un 92.0 6.1 0.00013 33.1 12.1 66 472-552 87-152 (161)
241 KOG0543 FKBP-type peptidyl-pro 91.9 1.3 2.9E-05 44.3 10.0 119 376-498 215-353 (397)
242 PF00637 Clathrin: Region in C 91.8 0.084 1.8E-06 46.0 1.5 85 4-91 12-96 (143)
243 PRK11906 transcriptional regul 91.8 6 0.00013 40.9 14.6 142 384-545 273-432 (458)
244 COG3629 DnrI DNA-binding trans 91.8 0.66 1.4E-05 44.7 7.6 62 472-548 154-215 (280)
245 KOG2610 Uncharacterized conser 91.7 2.1 4.5E-05 41.7 10.5 162 382-558 116-285 (491)
246 PF13281 DUF4071: Domain of un 91.6 15 0.00033 37.3 17.2 171 372-549 144-334 (374)
247 PF13512 TPR_18: Tetratricopep 91.6 4.3 9.4E-05 34.7 11.3 53 445-497 20-73 (142)
248 PF13281 DUF4071: Domain of un 91.4 18 0.00039 36.8 18.3 172 70-266 146-339 (374)
249 COG4105 ComL DNA uptake lipopr 91.2 13 0.00028 35.2 15.1 77 266-345 35-117 (254)
250 PF10300 DUF3808: Protein of u 91.2 6.7 0.00015 41.8 15.2 84 377-461 275-373 (468)
251 PF08631 SPO22: Meiosis protei 90.9 17 0.00037 35.7 18.2 117 9-125 3-150 (278)
252 KOG4555 TPR repeat-containing 90.8 6 0.00013 33.0 10.8 105 409-517 52-158 (175)
253 KOG2066 Vacuolar assembly/sort 90.8 30 0.00065 38.2 24.0 106 102-243 362-467 (846)
254 PF13176 TPR_7: Tetratricopept 90.6 0.53 1.2E-05 29.4 4.0 26 522-547 1-26 (36)
255 COG1729 Uncharacterized protei 90.6 3.1 6.7E-05 39.7 10.5 94 403-498 145-242 (262)
256 PF04184 ST7: ST7 protein; In 90.4 2.5 5.4E-05 43.7 10.4 111 475-601 263-381 (539)
257 COG4105 ComL DNA uptake lipopr 90.4 16 0.00035 34.6 14.9 157 379-548 44-232 (254)
258 PRK11906 transcriptional regul 90.0 12 0.00025 38.9 14.8 131 401-549 252-401 (458)
259 KOG1130 Predicted G-alpha GTPa 89.7 1.3 2.8E-05 44.2 7.5 50 9-59 27-80 (639)
260 PRK09687 putative lyase; Provi 89.5 23 0.00049 34.8 25.0 72 369-445 206-277 (280)
261 KOG0550 Molecular chaperone (D 89.4 27 0.00058 35.5 18.9 87 376-464 256-350 (486)
262 KOG1258 mRNA processing protei 89.3 34 0.00073 36.6 26.4 166 369-537 297-492 (577)
263 PF09205 DUF1955: Domain of un 89.1 9.1 0.0002 32.1 10.7 84 381-467 68-151 (161)
264 PF10300 DUF3808: Protein of u 88.8 7.7 0.00017 41.4 13.4 164 233-428 190-375 (468)
265 PF04097 Nic96: Nup93/Nic96; 88.5 45 0.00097 37.1 23.6 109 375-505 420-539 (613)
266 KOG4648 Uncharacterized conser 88.5 2.4 5.2E-05 41.3 8.2 92 409-519 106-198 (536)
267 PF13428 TPR_14: Tetratricopep 88.4 1.7 3.7E-05 28.6 5.3 28 402-429 3-30 (44)
268 PF00637 Clathrin: Region in C 87.6 0.038 8.3E-07 48.2 -4.1 81 40-123 13-97 (143)
269 TIGR02561 HrpB1_HrpK type III 87.5 2.2 4.7E-05 36.6 6.5 65 472-551 8-75 (153)
270 PF13176 TPR_7: Tetratricopept 87.5 1.3 2.8E-05 27.7 4.0 26 402-427 1-26 (36)
271 COG1729 Uncharacterized protei 87.2 5 0.00011 38.3 9.5 99 437-549 144-244 (262)
272 TIGR02561 HrpB1_HrpK type III 87.2 16 0.00034 31.5 11.4 98 447-547 22-120 (153)
273 COG3118 Thioredoxin domain-con 87.2 12 0.00026 36.2 11.9 151 379-546 144-299 (304)
274 PF13929 mRNA_stabil: mRNA sta 86.6 27 0.00058 33.9 13.9 142 416-592 144-290 (292)
275 COG0457 NrfG FOG: TPR repeat [ 86.5 27 0.00058 32.2 17.4 161 369-548 95-264 (291)
276 KOG1585 Protein required for f 86.5 29 0.00063 32.6 14.7 151 369-543 91-250 (308)
277 PF10602 RPN7: 26S proteasome 86.4 13 0.00028 33.6 11.5 96 402-499 38-141 (177)
278 PF04097 Nic96: Nup93/Nic96; 86.4 36 0.00077 37.8 17.1 214 165-397 113-355 (613)
279 KOG1585 Protein required for f 86.2 30 0.00066 32.5 13.5 45 268-326 93-137 (308)
280 KOG0276 Vesicle coat complex C 86.0 5.9 0.00013 41.9 9.9 150 77-293 598-747 (794)
281 KOG4555 TPR repeat-containing 86.0 5.9 0.00013 33.0 8.0 88 377-464 51-144 (175)
282 COG3629 DnrI DNA-binding trans 85.5 7.5 0.00016 37.7 9.9 60 369-428 153-215 (280)
283 KOG1258 mRNA processing protei 85.5 56 0.0012 35.0 26.7 114 11-125 57-180 (577)
284 PF09613 HrpB1_HrpK: Bacterial 85.3 4 8.7E-05 35.7 7.2 65 471-550 7-74 (160)
285 PF13512 TPR_18: Tetratricopep 84.7 5.4 0.00012 34.2 7.6 70 378-449 19-96 (142)
286 cd00923 Cyt_c_Oxidase_Va Cytoc 84.6 7.5 0.00016 30.5 7.5 61 417-479 24-84 (103)
287 PF07035 Mic1: Colon cancer-as 84.5 29 0.00062 30.9 12.9 120 19-146 14-135 (167)
288 PF02259 FAT: FAT domain; Int 84.5 50 0.0011 33.6 21.3 50 172-224 6-57 (352)
289 PF00515 TPR_1: Tetratricopept 84.4 2 4.3E-05 26.2 3.8 27 402-428 3-29 (34)
290 PF02284 COX5A: Cytochrome c o 84.2 7.3 0.00016 30.9 7.4 60 418-479 28-87 (108)
291 PF07035 Mic1: Colon cancer-as 83.9 31 0.00066 30.7 15.7 52 373-424 93-144 (167)
292 COG0457 NrfG FOG: TPR repeat [ 83.6 36 0.00079 31.3 22.1 208 283-497 39-262 (291)
293 COG3947 Response regulator con 83.1 38 0.00082 32.8 12.9 58 475-547 283-340 (361)
294 PF13170 DUF4003: Protein of u 83.1 21 0.00045 35.3 12.1 27 112-138 78-104 (297)
295 COG1747 Uncharacterized N-term 83.0 65 0.0014 33.8 18.6 142 402-549 68-234 (711)
296 PF10345 Cohesin_load: Cohesin 82.9 84 0.0018 35.0 32.8 173 17-190 39-251 (608)
297 PF07719 TPR_2: Tetratricopept 81.9 2.7 5.9E-05 25.4 3.7 28 521-548 2-29 (34)
298 KOG1941 Acetylcholine receptor 81.9 48 0.001 33.1 13.5 94 369-462 162-273 (518)
299 PF09613 HrpB1_HrpK: Bacterial 81.6 36 0.00078 29.9 11.6 48 447-497 22-70 (160)
300 PF07721 TPR_4: Tetratricopept 81.4 2.3 5E-05 24.2 2.9 24 521-544 2-25 (26)
301 PF13374 TPR_10: Tetratricopep 81.3 3.1 6.7E-05 26.6 4.0 28 521-548 3-30 (42)
302 KOG1920 IkappaB kinase complex 81.2 1.2E+02 0.0026 35.6 24.5 99 178-326 894-992 (1265)
303 PF00515 TPR_1: Tetratricopept 81.0 3.1 6.8E-05 25.3 3.7 29 521-549 2-30 (34)
304 PF10602 RPN7: 26S proteasome 80.9 18 0.00039 32.7 10.0 97 369-465 36-143 (177)
305 COG4649 Uncharacterized protei 80.6 41 0.00089 29.9 13.6 124 410-548 68-195 (221)
306 KOG2114 Vacuolar assembly/sort 79.7 1.1E+02 0.0024 34.3 21.5 55 6-61 404-458 (933)
307 COG4649 Uncharacterized protei 79.0 28 0.0006 30.9 9.8 21 307-328 176-196 (221)
308 COG5107 RNA14 Pre-mRNA 3'-end 78.7 86 0.0019 32.4 30.1 128 335-464 398-531 (660)
309 PF07719 TPR_2: Tetratricopept 78.7 4.2 9.1E-05 24.5 3.8 27 402-428 3-29 (34)
310 KOG4570 Uncharacterized conser 77.8 7.4 0.00016 37.7 6.6 100 161-261 61-165 (418)
311 cd00923 Cyt_c_Oxidase_Va Cytoc 77.3 14 0.0003 29.1 6.8 47 213-259 24-70 (103)
312 COG1747 Uncharacterized N-term 76.9 1E+02 0.0023 32.5 15.9 173 195-410 65-249 (711)
313 PF06552 TOM20_plant: Plant sp 76.5 17 0.00037 32.4 8.1 65 474-546 31-99 (186)
314 PF13181 TPR_8: Tetratricopept 76.3 6.2 0.00013 23.8 4.0 28 521-548 2-29 (34)
315 PF13374 TPR_10: Tetratricopep 76.2 5.5 0.00012 25.4 4.0 27 402-428 4-30 (42)
316 PF10345 Cohesin_load: Cohesin 75.5 1.4E+02 0.003 33.3 27.6 86 411-497 372-479 (608)
317 PF13431 TPR_17: Tetratricopep 75.3 3.4 7.3E-05 25.4 2.5 30 24-54 4-33 (34)
318 PRK13800 putative oxidoreducta 75.0 1.8E+02 0.0039 34.2 24.8 238 55-310 625-864 (897)
319 PRK13800 putative oxidoreducta 74.7 1.8E+02 0.0039 34.2 24.6 135 369-511 756-892 (897)
320 KOG1464 COP9 signalosome, subu 73.6 86 0.0019 30.0 14.5 201 283-485 43-286 (440)
321 COG4785 NlpI Lipoprotein NlpI, 73.2 79 0.0017 29.3 12.4 187 344-551 75-268 (297)
322 PF02284 COX5A: Cytochrome c o 73.1 19 0.0004 28.7 6.6 59 214-273 28-86 (108)
323 COG3898 Uncharacterized membra 72.6 1.2E+02 0.0025 31.0 26.0 240 209-464 133-392 (531)
324 PF13174 TPR_6: Tetratricopept 72.5 5.6 0.00012 23.7 3.1 28 522-549 2-29 (33)
325 PF11207 DUF2989: Protein of u 72.2 27 0.00058 32.0 8.4 74 417-491 123-198 (203)
326 COG5159 RPN6 26S proteasome re 71.9 64 0.0014 31.1 11.0 132 407-547 10-152 (421)
327 KOG4234 TPR repeat-containing 71.7 30 0.00065 31.5 8.4 88 445-549 105-197 (271)
328 KOG0686 COP9 signalosome, subu 71.4 83 0.0018 32.1 12.2 160 371-548 152-332 (466)
329 PF13181 TPR_8: Tetratricopept 71.0 6.5 0.00014 23.7 3.2 27 402-428 3-29 (34)
330 KOG4570 Uncharacterized conser 70.7 43 0.00092 32.8 9.7 36 111-146 115-150 (418)
331 COG4785 NlpI Lipoprotein NlpI, 70.6 91 0.002 28.9 14.2 186 174-396 75-264 (297)
332 TIGR03504 FimV_Cterm FimV C-te 68.9 10 0.00022 25.0 3.8 22 477-498 5-26 (44)
333 PF11207 DUF2989: Protein of u 68.7 24 0.00052 32.3 7.3 70 45-116 118-198 (203)
334 TIGR02508 type_III_yscG type I 68.6 58 0.0013 25.9 9.0 61 377-440 47-107 (115)
335 TIGR02508 type_III_yscG type I 68.5 58 0.0013 25.9 8.3 60 273-337 46-105 (115)
336 PF14561 TPR_20: Tetratricopep 68.1 16 0.00034 28.7 5.5 44 507-550 9-52 (90)
337 PF06552 TOM20_plant: Plant sp 67.6 29 0.00063 31.0 7.4 77 402-483 30-125 (186)
338 KOG2610 Uncharacterized conser 67.4 1.4E+02 0.003 29.8 15.3 144 349-496 119-272 (491)
339 PRK15180 Vi polysaccharide bio 67.0 1.7E+02 0.0036 30.6 25.2 111 11-125 301-420 (831)
340 KOG1941 Acetylcholine receptor 66.5 1.2E+02 0.0026 30.5 11.9 44 12-55 19-64 (518)
341 KOG1550 Extracellular protein 65.9 77 0.0017 34.7 12.2 155 379-553 259-430 (552)
342 PF02259 FAT: FAT domain; Int 65.6 1.6E+02 0.0034 29.8 19.1 63 162-224 144-212 (352)
343 KOG2066 Vacuolar assembly/sort 65.0 2.4E+02 0.0051 31.6 24.6 23 168-190 509-531 (846)
344 KOG4648 Uncharacterized conser 62.7 49 0.0011 32.7 8.5 90 377-470 105-197 (536)
345 PF13762 MNE1: Mitochondrial s 62.0 38 0.00083 29.2 7.0 77 68-144 42-128 (145)
346 PF07163 Pex26: Pex26 protein; 62.0 81 0.0017 30.5 9.6 89 406-497 89-184 (309)
347 PF13762 MNE1: Mitochondrial s 61.6 1E+02 0.0022 26.7 9.5 78 167-244 42-128 (145)
348 COG2976 Uncharacterized protei 61.4 1.3E+02 0.0028 27.4 12.2 86 41-126 96-189 (207)
349 KOG1586 Protein required for f 60.4 1.5E+02 0.0033 27.9 10.9 20 531-550 165-184 (288)
350 TIGR03504 FimV_Cterm FimV C-te 60.2 16 0.00035 24.0 3.5 26 525-550 4-29 (44)
351 COG5159 RPN6 26S proteasome re 58.0 83 0.0018 30.4 9.0 135 202-337 9-167 (421)
352 COG2976 Uncharacterized protei 58.0 1.3E+02 0.0028 27.4 9.8 123 67-226 56-189 (207)
353 PF11663 Toxin_YhaV: Toxin wit 56.0 13 0.00028 31.2 3.1 33 411-445 106-138 (140)
354 PF11846 DUF3366: Domain of un 55.8 41 0.00089 30.8 6.9 32 466-497 139-170 (193)
355 PRK15180 Vi polysaccharide bio 55.7 1.2E+02 0.0026 31.7 10.2 121 412-551 301-422 (831)
356 KOG4077 Cytochrome c oxidase, 55.7 79 0.0017 26.4 7.3 60 418-479 67-126 (149)
357 smart00028 TPR Tetratricopepti 55.4 20 0.00043 20.2 3.4 28 521-548 2-29 (34)
358 COG4455 ImpE Protein of avirul 55.3 62 0.0013 30.0 7.4 60 2-62 4-63 (273)
359 COG3947 Response regulator con 53.8 26 0.00057 33.8 5.1 49 40-88 285-336 (361)
360 KOG0276 Vesicle coat complex C 53.2 1.4E+02 0.003 32.3 10.4 104 378-499 646-749 (794)
361 PF10366 Vps39_1: Vacuolar sor 52.6 72 0.0016 26.0 6.9 27 402-428 41-67 (108)
362 PF14853 Fis1_TPR_C: Fis1 C-te 52.2 76 0.0017 21.9 6.8 26 523-548 4-29 (53)
363 KOG0991 Replication factor C, 51.7 1.4E+02 0.0031 28.1 9.2 151 169-347 135-285 (333)
364 KOG2396 HAT (Half-A-TPR) repea 50.4 3.4E+02 0.0073 28.8 19.1 240 16-259 299-558 (568)
365 PF10366 Vps39_1: Vacuolar sor 50.3 1.4E+02 0.003 24.3 8.5 28 97-124 40-67 (108)
366 PF10579 Rapsyn_N: Rapsyn N-te 49.2 42 0.00091 25.4 4.5 48 447-494 18-66 (80)
367 PF10579 Rapsyn_N: Rapsyn N-te 47.7 54 0.0012 24.8 4.9 46 412-457 18-65 (80)
368 KOG4234 TPR repeat-containing 47.7 2E+02 0.0044 26.4 9.2 85 409-497 104-194 (271)
369 PF09670 Cas_Cas02710: CRISPR- 46.0 3.3E+02 0.0072 28.1 12.3 55 409-464 140-198 (379)
370 KOG1464 COP9 signalosome, subu 45.8 2.8E+02 0.0062 26.7 17.1 149 176-326 39-218 (440)
371 PF11848 DUF3368: Domain of un 45.8 82 0.0018 21.2 5.2 33 411-443 13-45 (48)
372 PF11848 DUF3368: Domain of un 45.0 59 0.0013 21.8 4.5 39 5-43 8-46 (48)
373 PF04190 DUF410: Protein of un 44.2 2.7E+02 0.0058 27.0 10.7 127 16-190 31-167 (260)
374 TIGR02270 conserved hypothetic 44.1 4E+02 0.0087 27.9 23.3 192 84-295 88-280 (410)
375 PRK10941 hypothetical protein; 43.7 92 0.002 30.3 7.3 61 474-549 184-244 (269)
376 KOG4507 Uncharacterized conser 42.8 62 0.0013 34.6 6.1 127 386-531 590-721 (886)
377 PF12926 MOZART2: Mitotic-spin 42.5 1.6E+02 0.0034 22.8 6.7 44 147-190 26-69 (88)
378 PF10475 DUF2450: Protein of u 41.2 3.1E+02 0.0068 27.1 10.9 54 168-224 102-155 (291)
379 PF11663 Toxin_YhaV: Toxin wit 41.0 34 0.00075 28.8 3.3 34 106-141 105-138 (140)
380 PRK11619 lytic murein transgly 40.7 5.7E+02 0.012 28.7 28.6 117 413-547 254-373 (644)
381 PRK10564 maltose regulon perip 40.5 53 0.0011 32.1 5.0 41 402-442 259-299 (303)
382 PF09477 Type_III_YscG: Bacter 39.9 2E+02 0.0044 23.3 8.0 52 377-430 48-99 (116)
383 cd08819 CARD_MDA5_2 Caspase ac 39.7 1.8E+02 0.0039 22.6 6.7 64 19-84 22-85 (88)
384 PF09477 Type_III_YscG: Bacter 39.2 2.1E+02 0.0046 23.3 8.7 78 247-329 22-99 (116)
385 PF11846 DUF3366: Domain of un 39.2 62 0.0013 29.6 5.3 39 509-548 134-172 (193)
386 KOG4077 Cytochrome c oxidase, 38.9 1.6E+02 0.0034 24.8 6.6 47 214-260 67-113 (149)
387 PF14689 SPOB_a: Sensor_kinase 38.2 74 0.0016 22.8 4.4 24 474-497 26-49 (62)
388 PHA02875 ankyrin repeat protei 38.0 4.9E+02 0.011 27.1 14.7 78 9-90 9-90 (413)
389 KOG3364 Membrane protein invol 37.0 2.7E+02 0.0058 23.8 8.6 64 432-497 29-97 (149)
390 PF11525 CopK: Copper resistan 37.0 13 0.00028 26.8 0.3 21 653-673 8-28 (73)
391 KOG4279 Serine/threonine prote 36.6 5.6E+02 0.012 28.8 12.0 185 192-430 194-396 (1226)
392 PRK10564 maltose regulon perip 36.5 57 0.0012 31.9 4.6 37 199-235 260-296 (303)
393 KOG2168 Cullins [Cell cycle co 36.4 7E+02 0.015 28.5 19.7 16 482-497 718-733 (835)
394 KOG3807 Predicted membrane pro 36.2 2.4E+02 0.0052 28.0 8.6 56 406-463 281-339 (556)
395 PF13934 ELYS: Nuclear pore co 35.7 3.8E+02 0.0083 25.3 10.8 111 403-542 79-198 (226)
396 KOG1498 26S proteasome regulat 35.7 5.1E+02 0.011 26.6 11.9 90 476-566 136-258 (439)
397 PRK11619 lytic murein transgly 35.0 7E+02 0.015 28.0 35.7 394 71-554 105-510 (644)
398 KOG2034 Vacuolar sorting prote 34.7 7.6E+02 0.016 28.4 19.4 170 42-222 366-556 (911)
399 COG5108 RPO41 Mitochondrial DN 34.6 1.8E+02 0.004 31.8 8.1 88 169-259 33-131 (1117)
400 KOG0687 26S proteasome regulat 34.2 4.9E+02 0.011 26.0 12.3 24 199-222 107-130 (393)
401 PF07163 Pex26: Pex26 protein; 34.2 3.5E+02 0.0075 26.4 9.1 87 203-290 90-181 (309)
402 PF14427 Pput2613-deam: Pput_2 34.0 1.1E+02 0.0025 24.6 5.0 60 602-661 43-102 (118)
403 PF14853 Fis1_TPR_C: Fis1 C-te 33.5 1.4E+02 0.0031 20.6 5.0 29 406-436 7-35 (53)
404 smart00638 LPD_N Lipoprotein N 33.3 6.9E+02 0.015 27.5 20.8 63 63-127 308-371 (574)
405 PF04910 Tcf25: Transcriptiona 32.9 5.6E+02 0.012 26.3 15.0 64 470-548 99-167 (360)
406 PF08311 Mad3_BUB1_I: Mad3/BUB 32.8 3E+02 0.0065 23.1 8.6 42 418-459 81-123 (126)
407 PF15161 Neuropep_like: Neurop 32.2 15 0.00033 25.0 0.0 17 632-649 11-27 (65)
408 PF08311 Mad3_BUB1_I: Mad3/BUB 32.1 1.1E+02 0.0024 25.7 5.2 26 369-394 99-124 (126)
409 PF10255 Paf67: RNA polymerase 31.9 2.5E+02 0.0053 29.2 8.5 66 474-547 125-191 (404)
410 KOG0292 Vesicle coat complex C 31.8 5.6E+02 0.012 29.4 11.3 135 377-552 651-785 (1202)
411 PF14689 SPOB_a: Sensor_kinase 31.8 88 0.0019 22.4 3.9 45 418-464 8-52 (62)
412 KOG2063 Vacuolar assembly/sort 31.2 9E+02 0.019 28.2 13.8 230 2-276 507-742 (877)
413 PF04090 RNA_pol_I_TF: RNA pol 29.9 2.7E+02 0.0057 25.7 7.5 115 2-129 44-172 (199)
414 KOG1308 Hsp70-interacting prot 29.9 30 0.00065 34.3 1.6 92 447-555 126-217 (377)
415 PRK13342 recombination factor 29.7 6.7E+02 0.015 26.2 16.3 114 213-346 154-277 (413)
416 PF08967 DUF1884: Domain of un 29.5 72 0.0016 24.1 3.1 22 580-601 8-29 (85)
417 cd08326 CARD_CASP9 Caspase act 29.3 1.9E+02 0.0042 22.3 5.6 40 380-419 41-80 (84)
418 PF11768 DUF3312: Protein of u 29.2 7.1E+02 0.015 26.9 11.4 24 373-396 412-435 (545)
419 KOG0403 Neoplastic transformat 28.9 7E+02 0.015 26.2 19.2 56 374-429 514-572 (645)
420 PF11768 DUF3312: Protein of u 28.9 2.7E+02 0.0058 30.0 8.2 64 68-131 411-479 (545)
421 KOG2422 Uncharacterized conser 28.4 8E+02 0.017 26.7 11.5 118 4-122 289-445 (665)
422 KOG3807 Predicted membrane pro 28.3 6.1E+02 0.013 25.3 10.9 16 482-497 286-301 (556)
423 cd08819 CARD_MDA5_2 Caspase ac 28.1 2.9E+02 0.0063 21.5 6.3 39 176-216 48-86 (88)
424 TIGR01503 MthylAspMut_E methyl 28.0 79 0.0017 32.9 4.2 78 178-261 28-116 (480)
425 smart00544 MA3 Domain in DAP-5 26.6 3.5E+02 0.0075 21.9 7.4 21 202-222 8-28 (113)
426 KOG4521 Nuclear pore complex, 26.5 8.3E+02 0.018 29.2 11.8 156 376-543 927-1125(1480)
427 PF08225 Antimicrobial19: Pseu 26.4 27 0.0006 18.4 0.4 12 638-649 10-21 (23)
428 TIGR02270 conserved hypothetic 26.4 7.7E+02 0.017 25.8 24.9 119 369-498 161-279 (410)
429 PRK14963 DNA polymerase III su 26.3 5.5E+02 0.012 27.8 10.4 29 523-552 245-273 (504)
430 KOG2908 26S proteasome regulat 26.0 4.5E+02 0.0097 26.4 8.6 88 444-539 84-176 (380)
431 COG2178 Predicted RNA-binding 25.9 2E+02 0.0043 26.2 5.8 58 373-430 33-99 (204)
432 PF13929 mRNA_stabil: mRNA sta 25.8 6.5E+02 0.014 24.8 19.3 52 263-316 199-255 (292)
433 KOG2908 26S proteasome regulat 25.6 4.9E+02 0.011 26.2 8.8 82 407-489 82-175 (380)
434 KOG0292 Vesicle coat complex C 25.1 1.1E+03 0.024 27.3 12.4 157 147-328 622-782 (1202)
435 PF10475 DUF2450: Protein of u 25.1 4.7E+02 0.01 25.8 9.1 54 70-125 103-156 (291)
436 KOG4507 Uncharacterized conser 25.0 5.1E+02 0.011 28.2 9.3 144 329-479 566-718 (886)
437 PRK12402 replication factor C 24.8 5.4E+02 0.012 25.7 10.0 28 525-553 257-285 (337)
438 cd00280 TRFH Telomeric Repeat 24.8 3.2E+02 0.007 24.7 6.8 22 71-92 117-138 (200)
439 cd08326 CARD_CASP9 Caspase act 24.6 1.6E+02 0.0034 22.7 4.4 33 48-80 44-76 (84)
440 PRK11509 hydrogenase-1 operon 24.4 1.8E+02 0.004 24.7 5.1 83 566-653 37-126 (132)
441 PF02607 B12-binding_2: B12 bi 24.3 1.3E+02 0.0029 22.4 4.1 40 410-449 11-50 (79)
442 PF11817 Foie-gras_1: Foie gra 24.0 2.5E+02 0.0055 26.9 6.8 19 444-462 187-205 (247)
443 PRK10941 hypothetical protein; 24.0 6.8E+02 0.015 24.4 10.0 59 404-464 185-244 (269)
444 PF07720 TPR_3: Tetratricopept 23.7 1.3E+02 0.0028 18.8 3.1 23 522-544 3-25 (36)
445 PF12069 DUF3549: Protein of u 23.5 7.8E+02 0.017 24.9 12.1 89 169-261 171-260 (340)
446 cd08332 CARD_CASP2 Caspase act 23.4 3E+02 0.0065 21.5 5.8 35 381-415 46-80 (90)
447 KOG1586 Protein required for f 23.3 6.5E+02 0.014 24.0 13.6 21 313-333 168-188 (288)
448 PF12862 Apc5: Anaphase-promot 23.3 3.7E+02 0.0079 21.0 6.7 55 8-62 7-69 (94)
449 KOG3636 Uncharacterized conser 23.1 7.2E+02 0.016 25.9 9.6 71 427-499 175-253 (669)
450 KOG2659 LisH motif-containing 22.8 6.5E+02 0.014 23.7 12.3 92 402-496 28-128 (228)
451 COG0735 Fur Fe2+/Zn2+ uptake r 22.5 3.5E+02 0.0076 23.4 6.7 40 241-280 30-69 (145)
452 PF07575 Nucleopor_Nup85: Nup8 22.4 2.5E+02 0.0054 30.9 7.3 245 82-343 284-539 (566)
453 PRK11639 zinc uptake transcrip 22.1 2.8E+02 0.006 24.8 6.2 61 426-488 17-77 (169)
454 PF02847 MA3: MA3 domain; Int 22.0 1.8E+02 0.0039 23.6 4.8 20 203-222 9-28 (113)
455 COG2178 Predicted RNA-binding 21.5 4.6E+02 0.01 24.0 7.1 53 173-225 38-98 (204)
456 KOG0686 COP9 signalosome, subu 21.3 9.4E+02 0.02 25.0 13.5 59 66-124 151-215 (466)
457 KOG4334 Uncharacterized conser 21.2 46 0.001 34.3 1.1 145 31-177 412-573 (650)
458 PF09986 DUF2225: Uncharacteri 21.1 6.6E+02 0.014 23.5 8.7 61 441-501 124-195 (214)
459 PF11838 ERAP1_C: ERAP1-like C 20.7 8.3E+02 0.018 24.2 20.6 128 180-310 146-287 (324)
460 PRK11639 zinc uptake transcrip 20.6 3.2E+02 0.007 24.3 6.3 32 202-233 31-62 (169)
461 PF09454 Vps23_core: Vps23 cor 20.6 2.2E+02 0.0047 20.7 4.2 31 400-430 8-38 (65)
462 KOG4279 Serine/threonine prote 20.6 1.3E+03 0.027 26.2 15.6 43 477-519 350-399 (1226)
463 PRK06645 DNA polymerase III su 20.4 9.7E+02 0.021 25.9 10.8 100 214-334 191-292 (507)
464 COG4003 Uncharacterized protei 20.3 1.4E+02 0.003 22.6 3.1 36 91-126 25-61 (98)
465 COG4455 ImpE Protein of avirul 20.1 7.4E+02 0.016 23.3 11.6 77 402-479 3-80 (273)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4e-133 Score=1140.83 Aligned_cols=669 Identities=36% Similarity=0.624 Sum_probs=658.4
Q ss_pred CHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc----cChhHHHHHHHHHH
Q 037537 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH----ANVFSFNVLLAAYA 76 (677)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~ 76 (677)
||+++|.+|++.|++++|.++|+.|.+.|+.||.++|+.++++|++.+++..+.++|..+.+ +|+.++|.||.+|+
T Consensus 154 ~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~ 233 (857)
T PLN03077 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233 (857)
T ss_pred EHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999987 89999999999999
Q ss_pred hcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHH
Q 037537 77 RQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCL 154 (677)
Q Consensus 77 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~ 154 (677)
++|++++|.++|+.|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|+..++ .++++|..
T Consensus 234 k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 313 (857)
T PLN03077 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313 (857)
T ss_pred cCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHH
Q 037537 155 AIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTL 234 (677)
Q Consensus 155 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 234 (677)
+.+.|+.||..+||+||.+|+++|++++|.++|++| ..||+++||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 999999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCC
Q 037537 235 ASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEY 314 (677)
Q Consensus 235 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~ 314 (677)
+.++.+|++.|+++.|.++|+.+.+.|+.|+..++|+|+++|+++|+ +++|.++|++|.++|+++||+||.+|+++ |+
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~-~~~A~~vf~~m~~~d~vs~~~mi~~~~~~-g~ 470 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC-IDKALEVFHNIPEKDVISWTSIIAGLRLN-NR 470 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC-HHHHHHHHHhCCCCCeeeHHHHHHHHHHC-CC
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHh
Q 037537 315 SDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFD 393 (677)
Q Consensus 315 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 393 (677)
.++|+++|++|.. +++||..||+++|.+|++.| ++.++++|..+.+.|+.++ ..++|+||++|+|+|++++|.++|+
T Consensus 471 ~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~-~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 471 CFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD-GFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred HHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc-ceechHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999986 69999999999999999999 9999999999999999999 9999999999999999999999999
Q ss_pred cCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHH
Q 037537 394 RMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEH 473 (677)
Q Consensus 394 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 473 (677)
.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.+|+.|+..+
T Consensus 549 ~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 549 SH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred hc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999977799999999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCCCCCChHH-----------------HHHHHHHhccCCCCchhHHHHHHHHHhcCCh
Q 037537 474 YSCMIDLLGRAGKLTDAERLIEAMPFNPGSIA-----------------LKAANHFLQLEPSNAVPYVMLANIYAASGKW 536 (677)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----------------~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~ 536 (677)
|++|+++|+|+|++++|.+++++|+.+|+..+ +.+++++++++|+++..|+.|+++|+..|+|
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~ 707 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKW 707 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCCh
Confidence 99999999999999999999999999999876 6788899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCccc-----------hhhh
Q 037537 537 EEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLEEMSRKMKQAGYVPD-----------KEKR 605 (677)
Q Consensus 537 ~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~pd-----------~~~~ 605 (677)
++|.++++.|+++|++|+||+|||++++++|.|++||.+||+.++||..|+++..+|++.||+|| |+..
T Consensus 708 ~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~ 787 (857)
T PLN03077 708 DEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDI 787 (857)
T ss_pred HHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 6788
Q ss_pred hhhhhHHHHHHHhhccCCCCCcEEEEecccccCCccchhhhHhhhcCceEEEecCCccccccCccccCCC
Q 037537 606 LVHHSEKLAVAFGLLSTSYGEPILVMKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGD 675 (677)
Q Consensus 606 ~~~~~~~la~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~f~~g~csc~~ 675 (677)
+++||||||+|||||++|||.||||+||||+|+|||+++|+||++++|+|||||++|||||+||+|||+|
T Consensus 788 ~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 788 FCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.9e-120 Score=1008.10 Aligned_cols=580 Identities=36% Similarity=0.618 Sum_probs=569.0
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcC-CCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCCCCChhHHHHH
Q 037537 94 PDLVSYNTLISAYADCGDTESALSLFKDMREKR-FDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGFDHYASVNNSL 170 (677)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~~~~~~~~~l 170 (677)
++..+|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.+. .+.++|..+.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 577899999999999999999999999999864 78999999999999999988 899999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHH
Q 037537 171 LTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGG 250 (677)
Q Consensus 171 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 250 (677)
+++|+++|++++|.++|++| +.||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m-~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEM-PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcC-CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCC
Q 037537 251 LQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGY 330 (677)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~ 330 (677)
.++|..+.+.|+.+|..++|+|+++|+++|+ +++|.++|++|+++|+++||+||.+|++. |+.++|+++|++|.+.|+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~-~~~A~~vf~~m~~~~~vt~n~li~~y~~~-g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGD-IEDARCVFDGMPEKTTVAWNSMLAGYALH-GYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCC-HHHHHHHHHhCCCCChhHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999 99999999999999999999999999999 999999999999999999
Q ss_pred CCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHH
Q 037537 331 HPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAG 409 (677)
Q Consensus 331 ~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~ 409 (677)
.||..||++++.+|++.+ ++.+.++|..+.+.|+.++ ..++|+||++|+|+|++++|.++|++|.+||+++||+||.+
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d-~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~ 400 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD-IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC-eeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 999999999999999999 9999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHH
Q 037537 410 YAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTD 489 (677)
Q Consensus 410 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (677)
|+++|+.++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|.+.+|+.|+..+|++||++|+|+|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHhCCCCCChHH-----------------HHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 037537 490 AERLIEAMPFNPGSIA-----------------LKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQ 552 (677)
Q Consensus 490 A~~~~~~m~~~~~~~~-----------------~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 552 (677)
|.+++++|+..|+..+ +.+++++++++|++..+|+.|+++|++.|+|++|.+++++|+++|++
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 9999999999998766 66788899999999999999999999999999999999999999999
Q ss_pred cCCceeEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCccc------------hhhhhhhhhHHHHHHHhhc
Q 037537 553 KKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLEEMSRKMKQAGYVPD------------KEKRLVHHSEKLAVAFGLL 620 (677)
Q Consensus 553 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~pd------------~~~~~~~~~~~la~~~~~~ 620 (677)
|.||+|||++++++|.|++||.+||+..+||+.|+++..+|++.||.|| |+..+.+||||||+|||||
T Consensus 561 k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~ 640 (697)
T PLN03081 561 MHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLI 640 (697)
T ss_pred cCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCc
Confidence 9999999999999999999999999999999999999999999999998 7778999999999999999
Q ss_pred cCCCCCcEEEEecccccCCccchhhhHhhhcCceEEEecCCccccccCccccCCCCC
Q 037537 621 STSYGEPILVMKNLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSCGDYW 677 (677)
Q Consensus 621 ~~~~~~~~~~~~nl~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~f~~g~csc~~~~ 677 (677)
++|||.||||+||||+|+|||+++|+||++++|+|||||++|||||+||+|||+|||
T Consensus 641 ~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 641 NTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred cCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-82 Score=724.92 Aligned_cols=645 Identities=25% Similarity=0.367 Sum_probs=558.4
Q ss_pred CHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc----cChhHHHHHHHHHH
Q 037537 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH----ANVFSFNVLLAAYA 76 (677)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~ 76 (677)
+++.++.++.+.|++++|..+++.|.+.|++|+..+|..++..|.+.+.++.|.++|..+.+ +++.++|.|+.+|+
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~ 132 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFV 132 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999998877 78889999999999
Q ss_pred hcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHH
Q 037537 77 RQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCL 154 (677)
Q Consensus 77 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~ 154 (677)
++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+.+|++|+..++ .++++|..
T Consensus 133 ~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~ 212 (857)
T PLN03077 133 RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212 (857)
T ss_pred hCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888 89999999
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHH
Q 037537 155 AIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTL 234 (677)
Q Consensus 155 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 234 (677)
+.+.|+.+|+.++|+||.+|+++|++++|.++|++| +.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m-~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty 291 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM-PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC-CCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 999999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCC
Q 037537 235 ASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEY 314 (677)
Q Consensus 235 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~ 314 (677)
+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|+ +++|.++|++|.+||.++||+||.+|++. |+
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~-~~~A~~vf~~m~~~d~~s~n~li~~~~~~-g~ 369 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS-WGEAEKVFSRMETKDAVSWTAMISGYEKN-GL 369 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC-HHHHHHHHhhCCCCCeeeHHHHHHHHHhC-CC
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHh
Q 037537 315 SDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFD 393 (677)
Q Consensus 315 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 393 (677)
+++|+++|++|.+.|+.||..||+++|.+|++.+ ++.+.++|..+.+.|+.++ ..++|+||++|+++|++++|.++|+
T Consensus 370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~-~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY-VVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999 9999999999999999999 9999999999999999999999999
Q ss_pred cCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHH
Q 037537 394 RMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEH 473 (677)
Q Consensus 394 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 473 (677)
+|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+.+|.+|++.|.++.+.+++..+.+. |+.|+..+
T Consensus 449 ~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~ 526 (857)
T PLN03077 449 NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFL 526 (857)
T ss_pred hCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCcccee
Confidence 99999999999999999999999999999999986 58999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 037537 474 YSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQK 553 (677)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~ 553 (677)
+++||++|+|+|++++|.++|++| .| |..+|++|+.+|++.|+.++|.++|++|.+.|++|
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~--~~-----------------d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSH--EK-----------------DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhc--CC-----------------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999998 43 34556666666666666666666666666666655
Q ss_pred CCceeEEEECCE-EE-----------EEEe-CCCCCCCHHHHH----------HHHHHHHHHHHHcCCccch---hhhhh
Q 037537 554 KPGFSWIEVKKQ-MH-----------VFVA-EDGSHPMIKEIH----------NYLEEMSRKMKQAGYVPDK---EKRLV 607 (677)
Q Consensus 554 ~~~~s~~~~~~~-~~-----------~~~~-~~~~~~~~~~i~----------~~l~~l~~~~~~~g~~pd~---~~~~~ 607 (677)
+.- ++..+-.. .| .-+. .....|.. +.| ..+++..+.++++++.||. ..++.
T Consensus 588 d~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~-~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ 665 (857)
T PLN03077 588 DEV-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL-KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN 665 (857)
T ss_pred Ccc-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 431 11110000 00 0000 00001111 111 1355666666677777771 11111
Q ss_pred ---hh-----hHHHH-HHHhhccCCCCCcEEEEecccccCCccchhhhHhhhcCc--------eEEEecCCccccccCcc
Q 037537 608 ---HH-----SEKLA-VAFGLLSTSYGEPILVMKNLRICGDCHNAIKFISAIAGR--------EITVRDTYRFHCFKDGR 670 (677)
Q Consensus 608 ---~~-----~~~la-~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~s~~~~~--------~i~~~d~~~~h~f~~g~ 670 (677)
.| .|+.+ ..+.+.+..++..+.+.+-+...|++.++.+....|..+ ..|.- .+..|-|..|.
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~-~~~~~~f~~~d 744 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV-KGKVHAFLTDD 744 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE-CCEEEEEecCC
Confidence 11 12222 234454444444433333478899999999988777655 33332 36789998776
Q ss_pred ccC
Q 037537 671 CSC 673 (677)
Q Consensus 671 csc 673 (677)
-|-
T Consensus 745 ~~h 747 (857)
T PLN03077 745 ESH 747 (857)
T ss_pred CCC
Confidence 554
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.9e-69 Score=601.58 Aligned_cols=462 Identities=24% Similarity=0.384 Sum_probs=435.1
Q ss_pred CHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHccCChHHHHHHHhhccc----cChhHHHHHHHHH
Q 037537 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNL-VPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH----ANVFSFNVLLAAY 75 (677)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~ 75 (677)
+|+.+|.++.+.|++++|+++|+.|...+ +.|+..+|+.++.+|++.++++.|.++|..|.+ ||+.++|.|+.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 47899999999999999999999999865 789999999999999999999999999999987 9999999999999
Q ss_pred HhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHH
Q 037537 76 ARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHC 153 (677)
Q Consensus 76 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~ 153 (677)
+++|++++|.++|++|++||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..+. .++++|.
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988 9999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhH
Q 037537 154 LAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYT 233 (677)
Q Consensus 154 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 233 (677)
.+.+.|+.+|..++|+||++|+++|++++|.++|++| +.+|+++||+||.+|++.|++++|+++|++|.+.|+.||..|
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM-PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC-CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 9999999999999999999999999999999999999 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCC
Q 037537 234 LASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEE 313 (677)
Q Consensus 234 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~ 313 (677)
|++++.+|++.|+++.|+++|..|.+.|+.||..++++|+++|+++|+ +++|.++|++|.+||+++||+||.+|++. |
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~-~~~A~~vf~~m~~~d~~t~n~lI~~y~~~-G 405 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR-MEDARNVFDRMPRKNLISWNALIAGYGNH-G 405 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC-HHHHHHHHHhCCCCCeeeHHHHHHHHHHc-C
Confidence 999999999999999999999999999999999999999999999999 99999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHH-hhcccCccchhHHHHHHHHccCCHHHHHHH
Q 037537 314 YSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIK-IEIRSNRISVNNALVAMYSKCGNLEDARRL 391 (677)
Q Consensus 314 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 391 (677)
+.++|+++|++|.+.|+.||..||+++|.+|++.| ++.|.+++..+.+ .|+.|+ ..+|++++++|++.|++++|.++
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-AMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-ccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999 9999999999876 588888 88889999999999988888888
Q ss_pred HhcCC-CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc
Q 037537 392 FDRMP-EHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP 469 (677)
Q Consensus 392 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 469 (677)
|++|+ +|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.+++.|++.|++++|.++++.|.+. |+.+
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 88886 47888888888888888888888888888865 4454 568888888888888888888888888877 7654
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-66 Score=580.89 Aligned_cols=506 Identities=15% Similarity=0.187 Sum_probs=475.0
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHhhccc-----cChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHH
Q 037537 30 VPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH-----ANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLIS 104 (677)
Q Consensus 30 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~ 104 (677)
..++...|..++..|.+.|++++|.++|+.|.+ ++...++.++..|.+.|.+++|.++|+.|..||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 356778899999999999999999999999988 455677888899999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhH
Q 037537 105 AYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDE 182 (677)
Q Consensus 105 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 182 (677)
+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.++ .+.+++..|.+.|+.||..+|++||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHhhc---CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHH--CCCCCCHhHHHHHHHHHccCCChHHHHHHHHHH
Q 037537 183 AKRVFYEM---GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVS--LQLGLDMYTLASILTAFTSLEDLVGGLQFHAHL 257 (677)
Q Consensus 183 A~~~f~~m---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 257 (677)
|.++|++| +..||.++||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999 7789999999999999999999999999999986 679999999999999999999999999999999
Q ss_pred HHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC----CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCC
Q 037537 258 IKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP----QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPD 333 (677)
Q Consensus 258 ~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~ 333 (677)
.+.|+.|+..+|+++|.+|++.|+ +++|.++|++|. .||.++|+++|.+|++. |+.++|+++|++|.+.|+.||
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~-~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~-G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGD-WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA-GDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999 999999999997 48999999999999999 999999999999999999999
Q ss_pred cchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC----CCcchHHHHHH
Q 037537 334 DCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE----HNTVSLNSMIA 408 (677)
Q Consensus 334 ~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~----~~~~~~~~li~ 408 (677)
..+|+++|.+|++.| .+.+.+++..+.+.|+.|+ ..+||+||++|++.|++++|.++|++|.+ ||..+|+++|.
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999 9999999999999999999 99999999999999999999999999963 89999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c-------------------CCHHHHHHHHHHhHHhc
Q 037537 409 GYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH----T-------------------GKVAEGQKYFSMMKDMF 465 (677)
Q Consensus 409 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~-------------------g~~~~a~~~~~~m~~~~ 465 (677)
+|++.|+.++|.++|++|.+.|+.||..+|++++..|.+ . +..++|..+|++|.+.
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~- 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA- 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-
Confidence 999999999999999999999999999999999977642 1 2246799999999998
Q ss_pred CCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 037537 466 GFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRL 545 (677)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 545 (677)
|+.||..+|+.++..+.+.+..+.+..+++.|...|. +++..+|++|++++.+. .++|..++++
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~--------------~~~~~~y~~Li~g~~~~--~~~A~~l~~e 905 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISAD--------------SQKQSNLSTLVDGFGEY--DPRAFSLLEE 905 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCC--------------CcchhhhHHHHHhhccC--hHHHHHHHHH
Confidence 9999999999999999999999999999999975543 35788999999998432 3689999999
Q ss_pred HHhCCCccCC
Q 037537 546 MRDRGVQKKP 555 (677)
Q Consensus 546 m~~~g~~~~~ 555 (677)
|.+.|+.|+-
T Consensus 906 m~~~Gi~p~~ 915 (1060)
T PLN03218 906 AASLGVVPSV 915 (1060)
T ss_pred HHHcCCCCCc
Confidence 9999999764
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-64 Score=562.42 Aligned_cols=491 Identities=14% Similarity=0.155 Sum_probs=338.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCC
Q 037537 2 FRQVLKTCVGRRDLVTGKSLHALYLKNLV-PFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLR 80 (677)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (677)
|..++..|.+.|+++.|+++|+.|.+.|+ +++..+++.++..|.+.|.+++|.++|..|..||..+||.|+.+|++.|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcC
Confidence 55667777778888888888888888774 45555666666666666666666666666666666666666666666666
Q ss_pred hhHHHHHhccCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHH
Q 037537 81 IASARQLFDQIPQ----PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCL 154 (677)
Q Consensus 81 ~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~ 154 (677)
++.|.++|+.|.+ ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.++ .+.+++..
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6666666666653 56666666666666666666666666666666666666666666666666666 56666666
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-----CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 037537 155 AIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-----GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGL 229 (677)
Q Consensus 155 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 229 (677)
|.+.|+.||..+|+.||.+|++.|++++|.++|++| +..||.++|++||.+|++.|++++|.++|++|.+.|+.|
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 666666666666666666666666666666666666 235666666666666666666666666666666666666
Q ss_pred CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC----CCChhhHHHHH
Q 037537 230 DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP----QPDLVLWNTMI 305 (677)
Q Consensus 230 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~----~~~~~~~~~li 305 (677)
+..+|+.+|.+|++.|++++|.++|..|.+.|+.||..+|++++++|++.|+ +++|.++|++|. .||..+|+++|
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~-~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD-LDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666 666666666664 35666666666
Q ss_pred hhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCC
Q 037537 306 SGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGN 384 (677)
Q Consensus 306 ~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 384 (677)
.+|++. |++++|.++|++|...|+.||..||+++|.+|++.| .+.+.+++..|.+.|+.|+ ..+|++|+.+|++.|+
T Consensus 692 ~ay~k~-G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 692 GACSNA-KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDD 769 (1060)
T ss_pred HHHHhC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCC
Confidence 666666 666666666666666666666666666666666666 6666666666666666666 6666666666666666
Q ss_pred HHHHHHHHhcCCC----CCcchHHHHHHHHHH-----------------------cCChHHHHHHHHHHHHCCCCCCHHH
Q 037537 385 LEDARRLFDRMPE----HNTVSLNSMIAGYAQ-----------------------HGIGMEALRLFEWMLETNIPPTNIT 437 (677)
Q Consensus 385 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~-----------------------~g~~~~A~~l~~~m~~~g~~p~~~t 437 (677)
+++|.++|+.|.+ ||..+|++++..|.+ .+..++|+.+|++|++.|+.||..|
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 6666666666643 566666666543221 1223679999999999999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCC
Q 037537 438 FVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 438 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (677)
|+.+|.++...+..+.+..+++.|... +..|+..+|++||+++++. .++|..++++|.
T Consensus 850 ~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 850 LSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 999998777888899888888888766 7788899999999998543 478999999984
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.5e-28 Score=282.86 Aligned_cols=531 Identities=13% Similarity=0.100 Sum_probs=406.7
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhH
Q 037537 7 KTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIAS 83 (677)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 83 (677)
..+...|+++.|...+..+++.. +.+...+..+...+.+.|++++|.+.+..+.. .+...++.+...|.+.|++++
T Consensus 303 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 303 ASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 45667899999999999998875 55677778888888999999999999988876 456678888889999999999
Q ss_pred HHHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHh
Q 037537 84 ARQLFDQIPQ--P-DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYC 158 (677)
Q Consensus 84 A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~ 158 (677)
|.+.|+.+.+ | +...|..+...+...|++++|.+.|+++.+....+ ......+...+...++ .+..++..+.+.
T Consensus 382 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 382 AAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL-GRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 9999988764 3 45667788888889999999999998887654222 2233445555666665 666666666553
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-C-CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHH
Q 037537 159 GFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-G-EIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLAS 236 (677)
Q Consensus 159 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 236 (677)
.+.++.++..+...|...|++++|.+.|+++ . ...+...+..+...+...|++++|.+.|+++...+ +.+..++..
T Consensus 461 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 538 (899)
T TIGR02917 461 -QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILA 538 (899)
T ss_pred -CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 4556778888888888999999999998887 2 22345567778888888899999999998887754 235677778
Q ss_pred HHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHhhhcccCC
Q 037537 237 ILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTMISGYSQKEE 313 (677)
Q Consensus 237 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~ 313 (677)
+...+...|+.++|...+..+.+.+ +.+...+..+...|.+.|+ .++|..+++++. ..+...|..+...|.+. |
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 615 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQ-LKKALAILNEAADAAPDSPEAWLMLGRAQLAA-G 615 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-C
Confidence 8888888888888888888887765 4566677788888888888 888888888875 34567888888888888 8
Q ss_pred CHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHH
Q 037537 314 YSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLF 392 (677)
Q Consensus 314 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~ 392 (677)
++++|+..|+++.+.. ..+...+..+...+...+ .+.+...+..+.+. .|+....+..++..+.+.|++++|.+++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888887643 223445666666677777 88888888777754 3444677888888888888888888888
Q ss_pred hcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc
Q 037537 393 DRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP 469 (677)
Q Consensus 393 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 469 (677)
+.+.+ .+...|..+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~ 768 (899)
T TIGR02917 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPN 768 (899)
T ss_pred HHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC
Confidence 88764 35566777888888888888888888888875 455567777888888888888888888888764 344
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHhCC-CCCChHH-----------------HHHHHHHhccCCCCchhHHHHHHHHH
Q 037537 470 EGEHYSCMIDLLGRAGKLTDAERLIEAMP-FNPGSIA-----------------LKAANHFLQLEPSNAVPYVMLANIYA 531 (677)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~-----------------~~~~~~l~~l~p~~~~~~~~l~~~y~ 531 (677)
+...+..+...|.+.|++++|.+.|+++. ..|+... ....++++++.|+++..+..++.+|.
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLV 848 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 67778888888888888888888888762 2333222 34556677788888888888888888
Q ss_pred hcCChHHHHHHHHHHHhCCC
Q 037537 532 ASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 532 ~~g~~~~a~~~~~~m~~~g~ 551 (677)
..|++++|.++++++.+.+.
T Consensus 849 ~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCC
Confidence 88888888888888887663
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=2e-27 Score=277.43 Aligned_cols=526 Identities=14% Similarity=0.058 Sum_probs=406.5
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHH
Q 037537 8 TCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASA 84 (677)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 84 (677)
.+...|+++.|...+..+++.+ +.+...+..+...+...|++++|...++.+.+ .+...+..+...+.+.|++++|
T Consensus 270 ~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 270 VDFQKKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHH
Confidence 3456788999999998888876 33334444556677788999999999988876 3455677788888899999999
Q ss_pred HHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCc-ccHHHHHHHhhcchh--hHHHHHHHHHHh
Q 037537 85 RQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDG-FTLSGLITASSNNLC--LIKQLHCLAIYC 158 (677)
Q Consensus 85 ~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~--~~~~i~~~~~~~ 158 (677)
...++.+.+ .+...|+.+...+.+.|++++|.++|+++.+. .|+. ..+..+-..+...++ .+...+..+.+.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 349 IATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 998887764 35567888888899999999999999988764 3443 344444445555555 566666666665
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHH
Q 037537 159 GFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLAS 236 (677)
Q Consensus 159 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 236 (677)
.. .+......++..|.+.|++++|.++++++ ...++..+|+.+...+...|++++|.+.|+++.+.. +.+...+..
T Consensus 427 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 504 (899)
T TIGR02917 427 DP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAAN 504 (899)
T ss_pred CC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHH
Confidence 42 23445667778888999999999999888 233466778888899999999999999999887743 224556777
Q ss_pred HHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHhhhcccCC
Q 037537 237 ILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTMISGYSQKEE 313 (677)
Q Consensus 237 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~ 313 (677)
+...+...|++++|.+.+..+.+.. +.+..++..+...|.+.|+ .++|...|+++. ..+...+..+...|.+. |
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 581 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGN-EEEAVAWLEKAAELNPQEIEPALALAQYYLGK-G 581 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccchhHHHHHHHHHHHC-C
Confidence 7788888899999999999888765 4567788888888888888 999999988874 24556777888888888 8
Q ss_pred CHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHH
Q 037537 314 YSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLF 392 (677)
Q Consensus 314 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~ 392 (677)
++++|+.+++++.... ..+..++..+...+...+ .+.+...+..+.+.. |+.+..+..+...|.+.|++++|...|
T Consensus 582 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 582 QLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999887643 345567777778888888 888888888877653 333677888889999999999999999
Q ss_pred hcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc
Q 037537 393 DRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP 469 (677)
Q Consensus 393 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 469 (677)
+++.+ .+..+|..++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|...|+.+.+. .|
T Consensus 659 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~ 734 (899)
T TIGR02917 659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---AP 734 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CC
Confidence 88754 356788888999999999999999999998865 556777888888888899999999999988864 56
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHhCC-CCCChHH------------------HHHHHHHhccCCCCchhHHHHHHHH
Q 037537 470 EGEHYSCMIDLLGRAGKLTDAERLIEAMP-FNPGSIA------------------LKAANHFLQLEPSNAVPYVMLANIY 530 (677)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~------------------~~~~~~l~~l~p~~~~~~~~l~~~y 530 (677)
+..++..+..++.+.|++++|.+.++++. ..|+... ....+++++..|+++..+..++.+|
T Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 735 SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLY 814 (899)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 66778888888999999999998887762 2333322 5556777788899999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 037537 531 AASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 531 ~~~g~~~~a~~~~~~m~~~ 549 (677)
...|+ .+|+.+++++.+.
T Consensus 815 ~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKL 832 (899)
T ss_pred HhcCc-HHHHHHHHHHHhh
Confidence 99999 8899988888764
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=4.1e-31 Score=216.93 Aligned_cols=102 Identities=58% Similarity=0.911 Sum_probs=83.4
Q ss_pred ceeEEEECCEEEEEEeCCCCCCCHHHHHHHHH-HHHHHHHHcCCccch-----------hhhhhhhhHHHHHHHhhccCC
Q 037537 556 GFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLE-EMSRKMKQAGYVPDK-----------EKRLVHHSEKLAVAFGLLSTS 623 (677)
Q Consensus 556 ~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~l~~~~~~~g~~pd~-----------~~~~~~~~~~la~~~~~~~~~ 623 (677)
|+||+++ |.|++||.+||+...+...+. .....++..|+.++. +..+.+||||||+||||+++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~- 76 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT- 76 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce-
Confidence 7899988 999999999999854444332 222333334443332 34779999999999999998
Q ss_pred CCCcEEEEecc-cccCCccchhhhHhhhcCceEEEecCCcccccc
Q 037537 624 YGEPILVMKNL-RICGDCHNAIKFISAIAGREITVRDTYRFHCFK 667 (677)
Q Consensus 624 ~~~~~~~~~nl-~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~f~ 667 (677)
+|+||+ |||+|||+++|+||+++||+|||||++|||||+
T Consensus 77 -----~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 77 -----RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred -----eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 899998 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=1e-18 Score=205.20 Aligned_cols=514 Identities=12% Similarity=0.054 Sum_probs=282.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhH----------------HHHHHHHHccCChHHHHHHHhhccc--cCh
Q 037537 4 QVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLS----------------NHFILLYSKCGCLSAAHHAFNQTQH--ANV 65 (677)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~ll~~~~~~g~~~~a~~~~~~~~~--~~~ 65 (677)
.+...+.+.|+.++|.+.++++.+.. |.+.... ..+...+.+.|++++|.+.++.+.. |+.
T Consensus 67 ~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~ 145 (1157)
T PRK11447 67 ARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPE 145 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCC
Confidence 34556677778888888887777776 3333322 2233456677788888887777766 222
Q ss_pred hHH-HHH-HHHHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCC------------
Q 037537 66 FSF-NVL-LAAYARQLRIASARQLFDQIPQ--P-DLVSYNTLISAYADCGDTESALSLFKDMREKRFD------------ 128 (677)
Q Consensus 66 ~~~-~~l-i~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------ 128 (677)
... ... .......|+.++|++.|+.+.+ | +...+..+...+...|+.++|+..|+++.+....
T Consensus 146 ~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l 225 (1157)
T PRK11447 146 LDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQI 225 (1157)
T ss_pred hHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 111 111 1112234777788887777764 3 3445667777788888888888888877543210
Q ss_pred ----CCccc---HHHHHHHhhcchh--hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCC-Cee
Q 037537 129 ----TDGFT---LSGLITASSNNLC--LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIK-DEV 197 (677)
Q Consensus 129 ----p~~~t---~~~ll~a~~~~~~--~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~-~~~ 197 (677)
++... +...+..+..... .+...+....+....|+. .....-..+...|++++|...|++. ...| +..
T Consensus 226 ~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~-~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~ 304 (1157)
T PRK11447 226 KDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF-RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSE 304 (1157)
T ss_pred hccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 00000 0000100000000 111111111111111111 1112234455667777777777766 2223 455
Q ss_pred eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhHH------------HHHHHHHccCCChHHHHHHHHHHHHhCCCC
Q 037537 198 SWNSMVVAYGQHREGLEALQLFQEMVSLQLGL-DMYTL------------ASILTAFTSLEDLVGGLQFHAHLIKSGFHQ 264 (677)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~------------~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 264 (677)
.+..+...|.+.|++++|+..|++..+..... +...+ ......+.+.|++++|...+..+++.. +.
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~ 383 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NT 383 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 66677777777777777777777766543211 11111 111234456677777777777777653 33
Q ss_pred chhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--C-ChhhHHHHHhh----------------------------------
Q 037537 265 NSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--P-DLVLWNTMISG---------------------------------- 307 (677)
Q Consensus 265 ~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~---------------------------------- 307 (677)
+...+..+...|...|+ .++|++.|++..+ | +...+..+...
T Consensus 384 ~~~a~~~Lg~~~~~~g~-~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKD-YAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 44556666677777777 7777777776542 2 22233333332
Q ss_pred --------hcccCCCHHHHHHHHHHHhhcCCCCCcc-hHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 308 --------YSQKEEYSDQALGCFKKLNRVGYHPDDC-SFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 308 --------~~~~~~~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
+... |++++|++.|++..+. .|+.. .+..+-..+...| .+.+...+..+++.. |+++.....+..
T Consensus 463 ~~~~~a~~~~~~-g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al 537 (1157)
T PRK11447 463 RLAQQAEALENQ-GKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGL 537 (1157)
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHH
Confidence 3334 5566666666665543 34332 2333444455555 666666665555422 222334444444
Q ss_pred HHHccCCHHHHHHHHhcCCCCC----c---------chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPEHN----T---------VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSA 444 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 444 (677)
.+.+.|+.++|...++.++... . ..+..+...+...|+.++|+.+++. .+++...+..+...
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~ 612 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADW 612 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHH
Confidence 4555566666666665554311 0 0112234456666777777666651 24445556666667
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhH
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPY 523 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~ 523 (677)
+...|+.++|...|+.+.+. .| +...+..++.+|...|++++|++.++... +..|+++..+
T Consensus 613 ~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll---------------~~~p~~~~~~ 674 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLP---------------ATANDSLNTQ 674 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh---------------ccCCCChHHH
Confidence 77777777777777777753 34 45667777777777777777777777553 4556666667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 524 VMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 524 ~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
..+..++...|++++|.++++++...
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 77777777777777777777776654
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=4.8e-18 Score=199.64 Aligned_cols=532 Identities=11% Similarity=-0.000 Sum_probs=363.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc--cChhHH--------------
Q 037537 5 VLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH--ANVFSF-------------- 68 (677)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~-------------- 68 (677)
.++.+...++.+.|.+.+.++.... +.++.++..++..+.+.|+.++|.+.+++..+ |+...+
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCch
Confidence 3456778899999999999999886 77889999999999999999999999999988 332221
Q ss_pred ---HHHHHHHHhcCChhHHHHHhccCCCC--CcchHHH--HHHHHHhCCChhHHHHHHHHhHhcCCCCCccc-HHHHHHH
Q 037537 69 ---NVLLAAYARQLRIASARQLFDQIPQP--DLVSYNT--LISAYADCGDTESALSLFKDMREKRFDTDGFT-LSGLITA 140 (677)
Q Consensus 69 ---~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a 140 (677)
..+...+.+.|++++|.+.|+...+. +...... ........|+.++|++.|+++.+. .|+... ...+-..
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~~~~~~LA~l 190 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNTGLRNTLALL 190 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 23344688899999999999988753 2222111 111122458999999999999876 465443 3333334
Q ss_pred hhcchh--hHHHHHHHHHHhCCC----------------CC---hhHHHHHHHHHHhcCChhHHHHHHhhc---CCCCCe
Q 037537 141 SSNNLC--LIKQLHCLAIYCGFD----------------HY---ASVNNSLLTCYSRNGFLDEAKRVFYEM---GEIKDE 196 (677)
Q Consensus 141 ~~~~~~--~~~~i~~~~~~~g~~----------------~~---~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~ 196 (677)
+...++ .+...+..+.+..-. .+ ...+...+..+-.....+.|...+.+. ...|+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 444444 566666666543210 01 111122222222223344555555543 112221
Q ss_pred eeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCc-hhhH-----
Q 037537 197 VSWNSMVVAYGQHREGLEALQLFQEMVSLQLGL-DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQN-SHIG----- 269 (677)
Q Consensus 197 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~----- 269 (677)
. .......+...|++++|+..|++..+. .| |...+..+..++.+.|++++|...+..+++..-... ...+
T Consensus 271 ~-~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 271 R-ARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred H-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 1 123356677899999999999999885 35 677888888999999999999999999988642221 1112
Q ss_pred -------HHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcc-hHH
Q 037537 270 -------SGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDC-SFV 338 (677)
Q Consensus 270 -------~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~-t~~ 338 (677)
..+...+.+.|+ +++|...|++... .+...+..+...+... |++++|++.|++..+. .|+.. .+.
T Consensus 348 ~~~~~~~~~~g~~~~~~g~-~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~-g~~~eA~~~y~~aL~~--~p~~~~a~~ 423 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANN-LAQAERLYQQARQVDNTDSYAVLGLGDVAMAR-KDYAAAERYYQQALRM--DPGNTNAVR 423 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 122446678888 9999999998863 4556777788888888 9999999999999874 45543 333
Q ss_pred HHHHHhhccChhHHHHHHHHHHHhhc--------ccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHH
Q 037537 339 CVISACSNLSPSLGKQIHALTIKIEI--------RSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMI 407 (677)
Q Consensus 339 ~ll~a~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li 407 (677)
.+...+.....+.+......+..... ... ...+..+...+...|++++|.+.|++..+ | +...+..+.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~-~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA 502 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ-NDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLA 502 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh-hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 33333322225555555443221110 001 23456677889999999999999998765 3 455677888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccCh---------HHHHHHH
Q 037537 408 AGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG---------EHYSCMI 478 (677)
Q Consensus 408 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---------~~~~~li 478 (677)
..|.+.|++++|...|+++.+.. +.+...+..+...+...++.++|...++.+... ...++. ..+..+.
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHH
Confidence 99999999999999999998743 223444444445567789999999998876532 222221 1233456
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCChHH---------------HHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 037537 479 DLLGRAGKLTDAERLIEAMPFNPGSIA---------------LKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIR 543 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~---------------~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 543 (677)
+.|...|+.++|.++++.-|..+.... ....+++++.+|+++.++..++.+|...|++++|.+.+
T Consensus 581 ~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 778889999999999986554443222 66677888999999999999999999999999999999
Q ss_pred HHHHhC
Q 037537 544 RLMRDR 549 (677)
Q Consensus 544 ~~m~~~ 549 (677)
+...+.
T Consensus 661 ~~ll~~ 666 (1157)
T PRK11447 661 AKLPAT 666 (1157)
T ss_pred HHHhcc
Confidence 977653
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=5.2e-19 Score=175.99 Aligned_cols=378 Identities=17% Similarity=0.255 Sum_probs=246.8
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCc-ccHHHHHHHhhcchh--hHHHHHHHHHHhCCCCChhH-HHHHHH
Q 037537 97 VSYNTLISAYADCGDTESALSLFKDMREKRFDTDG-FTLSGLITASSNNLC--LIKQLHCLAIYCGFDHYASV-NNSLLT 172 (677)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~~~~~~-~~~li~ 172 (677)
.+|..+...+-..|++++|+.+|+.|.+. +|+. ..|..+-.++...++ .+.+.+...++. .|+... .+.+-.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 45555666666666666666666666553 2321 122222222222222 222222222211 222211 122223
Q ss_pred HHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCCChHH
Q 037537 173 CYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-MYTLASILTAFTSLEDLVG 249 (677)
Q Consensus 173 ~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~ 249 (677)
.....|++.+|...+.+. ...| =.+.|+.|...+-.+|+..+|+.-|++.+. +.|+ ...|..+-..+...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchH
Confidence 334456666666666554 2233 245677777777777777777777776665 4444 3455566666666666666
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--CC-hhhHHHHHhhhcccCCCHHHHHHHHHHHh
Q 037537 250 GLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--PD-LVLWNTMISGYSQKEEYSDQALGCFKKLN 326 (677)
Q Consensus 250 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~~~~~~~A~~l~~~m~ 326 (677)
|...+..+.... +....++..+...|...|. ++-|+..+++..+ |+ ...||.|..++-.. |+..+|.+.|.+..
T Consensus 271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~-ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~-G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGL-LDLAIDTYKRALELQPNFPDAYNNLANALKDK-GSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHhcC-CcchhhccceEEEEecccc-HHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc-cchHHHHHHHHHHH
Confidence 666665555432 2233444555555555566 6666666665542 33 24566666666666 66666666666555
Q ss_pred hcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--CC-cchH
Q 037537 327 RVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--HN-TVSL 403 (677)
Q Consensus 327 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~ 403 (677)
. +.|+ .....+.|...|...|.+++|..+|....+ |. ....
T Consensus 348 ~--l~p~----------------------------------hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~ 391 (966)
T KOG4626|consen 348 R--LCPN----------------------------------HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAH 391 (966)
T ss_pred H--hCCc----------------------------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhh
Confidence 4 2233 266789999999999999999999998766 32 3468
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHH
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLL 481 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 481 (677)
|.|...|-++|+.++|+..|++.+. ++|+ ...|+.+-..+-..|+++.|.+.+...+ .+.|. .+..+.|...|
T Consensus 392 nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI---~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI---QINPTFAEAHSNLASIY 466 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH---hcCcHHHHHHhhHHHHh
Confidence 9999999999999999999999998 7898 5789999999999999999999999888 46776 67888999999
Q ss_pred hhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHH
Q 037537 482 GRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEV 539 (677)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a 539 (677)
-.+|++.+|..-+++. ++++|+-+.+|..++-..---.+|.+-
T Consensus 467 kDsGni~~AI~sY~~a---------------LklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 467 KDSGNIPEAIQSYRTA---------------LKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred hccCCcHHHHHHHHHH---------------HccCCCCchhhhHHHHHHHHHhcccch
Confidence 9999999999999876 578888888888887776666666663
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=2.2e-19 Score=187.98 Aligned_cols=302 Identities=15% Similarity=0.147 Sum_probs=230.1
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCc---hhhHHHHHHHHHHcC
Q 037537 204 VAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQN---SHIGSGLIDLYAKCS 280 (677)
Q Consensus 204 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g 280 (677)
..+...|++++|+..|+++.+.+. .+..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344556667777777777766421 2334566666666677777777777776665432111 245677888888888
Q ss_pred CCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHH
Q 037537 281 GDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHA 357 (677)
Q Consensus 281 ~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~ 357 (677)
+ +++|..+|+++.+ .+..+++.++..+.+. |++++|++.|+.+.+.+..++....
T Consensus 122 ~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~-------------------- 179 (389)
T PRK11788 122 L-LDRAEELFLQLVDEGDFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGGDSLRVEI-------------------- 179 (389)
T ss_pred C-HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcCCcchHHH--------------------
Confidence 8 9999999998864 5667899999999998 9999999999999876433221111
Q ss_pred HHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 037537 358 LTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT 434 (677)
Q Consensus 358 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 434 (677)
...+..+...|.+.|++++|...|+++.+ | +...+..+...|.+.|++++|+++|+++.+.+....
T Consensus 180 -----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 180 -----------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred -----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 23356678888999999999999998764 3 355788888999999999999999999998542222
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 435 NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 435 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
..++..+..++...|++++|...++.+.+. .|+...+..++..|.+.|++++|.++++++. +
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l---------------~ 310 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQL---------------R 310 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHH---------------H
Confidence 467888999999999999999999999865 6777778899999999999999999998773 4
Q ss_pred cCCCCchhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCccCCcee
Q 037537 515 LEPSNAVPYVMLANIYAA---SGKWEEVATIRRLMRDRGVQKKPGFS 558 (677)
Q Consensus 515 l~p~~~~~~~~l~~~y~~---~g~~~~a~~~~~~m~~~g~~~~~~~s 558 (677)
..|++ ..+..++..+.. .|+.+++..++++|.+++++++|.+.
T Consensus 311 ~~P~~-~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 311 RHPSL-RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred hCcCH-HHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 45654 466666766654 56999999999999999999999743
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=1.3e-15 Score=171.22 Aligned_cols=519 Identities=11% Similarity=0.011 Sum_probs=284.5
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc--cChhHHHHHHHHHHhcCChhHHHHHh
Q 037537 11 GRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH--ANVFSFNVLLAAYARQLRIASARQLF 88 (677)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f 88 (677)
..|++++|...+++.++.. |-+..++..|...|.+.|+.++|+...++..+ |+-..+..++..+ ++.++|..++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 3478888888888888877 55677888888888888888888888888777 3222222222222 6666666666
Q ss_pred ccCCC--CC-cchHHHHHHH--------HHhCCChhHHHHHHHHhHhcCCCCCcccHHHH-HHHhhcchh--hHHHHHHH
Q 037537 89 DQIPQ--PD-LVSYNTLISA--------YADCGDTESALSLFKDMREKRFDTDGFTLSGL-ITASSNNLC--LIKQLHCL 154 (677)
Q Consensus 89 ~~m~~--~~-~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~~~--~~~~i~~~ 154 (677)
+++.. |+ ...+..+... |.+. ++|.+.++ .......|+..+.... .+.+...++ .+..++..
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 66643 22 2222222222 3333 22332222 2221122223322222 444444444 34444444
Q ss_pred HHHhCCCCChhHHHHHHHHHHh-cCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCC-CCHh
Q 037537 155 AIYCGFDHYASVNNSLLTCYSR-NGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLG-LDMY 232 (677)
Q Consensus 155 ~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~ 232 (677)
+.+.+. .+......|-.+|.. .++ +++..+++.. ...|...+..+...|.+.|+.++|.++++++...-.. |+..
T Consensus 208 L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~-lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 208 ARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQG-IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred HHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchh-cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 444432 222223333334444 233 4444444432 3334444555555555555555555555544322111 2222
Q ss_pred HHHHH------------------------------HHHHccCCChH-----------------------------HHHHH
Q 037537 233 TLASI------------------------------LTAFTSLEDLV-----------------------------GGLQF 253 (677)
Q Consensus 233 t~~~l------------------------------l~a~~~~~~~~-----------------------------~a~~~ 253 (677)
++.-+ +..+.+.++++ ++.+.
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 22111 11122222222 22222
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--CC----hhhHHHHHhhhcccCCC---HHHHHHH---
Q 037537 254 HAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--PD----LVLWNTMISGYSQKEEY---SDQALGC--- 321 (677)
Q Consensus 254 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~~~~---~~~A~~l--- 321 (677)
+..+.+.. +-+....--+.-...+.|+ .++|.++|++... ++ ...-+-++..|.+. +. ..+++.+
T Consensus 365 ~~~~y~~~-~~~~~~l~q~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 365 ARLLYQQE-PANLTRLDQLTWQLMQNGQ-SREAADLLLQRYPFQGDARLSQTLMARLASLLESH-PYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHccc-HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhC-CcccchHHHHHhccc
Confidence 22222221 1122222222223344566 7777777776643 11 22333555556555 43 3333333
Q ss_pred ---------HHH----------Hhh-cCCCCC--cchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHH
Q 037537 322 ---------FKK----------LNR-VGYHPD--DCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAM 378 (677)
Q Consensus 322 ---------~~~----------m~~-~g~~p~--~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~ 378 (677)
..+ ... .+..|+ .......+..|...+ .+.+...+....... |+ ......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd-~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PD-AWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--Cc-hHHHHHHHHH
Confidence 111 111 112233 222222223333335 555666555544433 33 2223334444
Q ss_pred HHccCCHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037537 379 YSKCGNLEDARRLFDRMPE--HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQK 456 (677)
Q Consensus 379 y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 456 (677)
+.+.|++++|...|+++.. ++...+..+...+.+.|+.++|...|++.++.. +++...+..+.......|++++|..
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHH
Confidence 5688999999999887654 444556777778888999999999999888754 2233333344445556699999999
Q ss_pred HHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC-CCCCChHH------------------HHHHHHHhccCC
Q 037537 457 YFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM-PFNPGSIA------------------LKAANHFLQLEP 517 (677)
Q Consensus 457 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~------------------~~~~~~l~~l~p 517 (677)
.++...+ +.|+...|..+..++.+.|+.++|.+.+++. ...|+... ....+++++++|
T Consensus 598 ~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 598 DLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 9988875 4677888888888899999999999988876 33455443 556778889999
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 518 SNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 518 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
+++..+..+..+|...|++++|...+++..+..
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999987643
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=2.5e-18 Score=180.06 Aligned_cols=293 Identities=14% Similarity=0.097 Sum_probs=234.5
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc-cC------hhHHHHHHHHHHhcCCh
Q 037537 9 CVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH-AN------VFSFNVLLAAYARQLRI 81 (677)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~------~~~~~~li~~~~~~g~~ 81 (677)
....|+++.|...+..+++.+ +.+..++..+...+.+.|++++|..+++.+.. ++ ...+..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 446688888999999998875 55667888888888889999999988888776 21 24577788888888999
Q ss_pred hHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHh
Q 037537 82 ASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYC 158 (677)
Q Consensus 82 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~ 158 (677)
+.|..+|+.+.+ ++..+++.++..+.+.|++++|.+.++.+.+.+..++....
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------------ 179 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI------------------------ 179 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH------------------------
Confidence 999999888865 45667888888899999999999999888775422211100
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHH
Q 037537 159 GFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLAS 236 (677)
Q Consensus 159 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 236 (677)
...+..+...+.+.|++++|.+.|+++ ...| +...+..+...+.+.|++++|+++|+++...+......++..
T Consensus 180 -----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 254 (389)
T PRK11788 180 -----AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK 254 (389)
T ss_pred -----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHH
Confidence 112356677888999999999999998 2233 355788888999999999999999999987543333567888
Q ss_pred HHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC--CCChhhHHHHHhhhcc---c
Q 037537 237 ILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP--QPDLVLWNTMISGYSQ---K 311 (677)
Q Consensus 237 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~---~ 311 (677)
+..++...|+++.|.+.+..+.+. .|+..++..+...|.+.|+ +++|.++|+++. .|+..+++.++..+.. .
T Consensus 255 l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~-~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 255 LMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEG-PEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCC
Confidence 999999999999999999999887 4666677899999999999 999999999875 4888899988887764 4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCcc
Q 037537 312 EEYSDQALGCFKKLNRVGYHPDDC 335 (677)
Q Consensus 312 ~~~~~~A~~l~~~m~~~g~~p~~~ 335 (677)
|+.++++.+|++|.+.+++|++.
T Consensus 332 -g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 332 -GRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -ccchhHHHHHHHHHHHHHhCCCC
Confidence 58899999999999988888765
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=3.6e-15 Score=167.67 Aligned_cols=522 Identities=13% Similarity=0.030 Sum_probs=285.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHH----
Q 037537 2 FRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAA---- 74 (677)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~---- 74 (677)
+..|.+.+...|+.++|+...++.++.. |.|...+..+ ..+ ++.++|..+++++.+ .+..++..+...
T Consensus 81 ~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~ 155 (987)
T PRK09782 81 TLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQ 155 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhcc
Confidence 4567889999999999999999999886 4444444444 322 889999999999998 345556666555
Q ss_pred ----HHhcCChhHHHHHhccCCCCC--cchHHH-HHHHHHhCCChhHHHHHHHHhHhcCCCCCccc-HHHHHHHhhcc-h
Q 037537 75 ----YARQLRIASARQLFDQIPQPD--LVSYNT-LISAYADCGDTESALSLFKDMREKRFDTDGFT-LSGLITASSNN-L 145 (677)
Q Consensus 75 ----~~~~g~~~~A~~~f~~m~~~~--~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~-~ 145 (677)
|.+.+....+++ .....|+ ...... +...|.+.|++++|++++.++.+.+ |.... ...+-.++... +
T Consensus 156 ~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~ 231 (987)
T PRK09782 156 NALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQL 231 (987)
T ss_pred chhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhC
Confidence 777766666666 3333344 443444 4899999999999999999999985 33333 33333344432 2
Q ss_pred h-hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcC----CCCCeeeHHHH------------------
Q 037537 146 C-LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMG----EIKDEVSWNSM------------------ 202 (677)
Q Consensus 146 ~-~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~~l------------------ 202 (677)
. .+..+ .+..+..++.++.++.+.|.+.|+.++|.+++++++ ..|+..+|--+
T Consensus 232 ~~~a~al----~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~ 307 (987)
T PRK09782 232 DDRLLAL----QSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQ 307 (987)
T ss_pred HHHHHHH----hchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhh
Confidence 2 22222 222445788899999999999999999999999981 11222222111
Q ss_pred ------------HHHHHhCCCch-----------------------------HHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 037537 203 ------------VVAYGQHREGL-----------------------------EALQLFQEMVSLQLGL-DMYTLASILTA 240 (677)
Q Consensus 203 ------------i~~~~~~g~~~-----------------------------~A~~~~~~m~~~g~~p-d~~t~~~ll~a 240 (677)
+..+.++++++ ++.+.++.|.+.. | +....--+--.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~ 385 (987)
T PRK09782 308 FADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE--PANLTRLDQLTWQ 385 (987)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 22222333332 2222222222210 1 22222222222
Q ss_pred HccCCChHHHHHHHHHHHHh-C-CCCchhhHHHHHHHHHHcCCCHHHHHHH----------------------------H
Q 037537 241 FTSLEDLVGGLQFHAHLIKS-G-FHQNSHIGSGLIDLYAKCSGDMRDCMKV----------------------------F 290 (677)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~y~~~g~~~~~A~~~----------------------------f 290 (677)
....|+.++|.+++.+.... + -..+....+-|+..|.+.+. +....++ +
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY-LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc-ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 34455666666666655542 1 11233344455555555432 1111111 1
Q ss_pred hhCCC---C--ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhc
Q 037537 291 EEIPQ---P--DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEI 364 (677)
Q Consensus 291 ~~~~~---~--~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~ 364 (677)
..... + +...|..+...+.. +++++|+..|.+.... .|+......+..++...| .+.+...+..+...
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~--~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-- 538 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRD--TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-- 538 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHh--CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 11110 1 23344444444432 4445555555544432 244333222222233445 55555555544322
Q ss_pred ccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037537 365 RSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMI---AGYAQHGIGMEALRLFEWMLETNIPPTNITFVSV 441 (677)
Q Consensus 365 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 441 (677)
.++ ...+..+...+.+.|+.++|...|++..+.++..++... ......|++++|+..|++.++ +.|+...+..+
T Consensus 539 ~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~L 615 (987)
T PRK09782 539 DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVAR 615 (987)
T ss_pred CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 122 223344445555556666666655554443222222222 122223566666666666555 23455555555
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhC-CCCCChHH--------------
Q 037537 442 LSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAM-PFNPGSIA-------------- 505 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~-------------- 505 (677)
..++.+.|+.++|...++...+. .|+ ...+..+...+...|++++|++.+++. ...|+...
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 55555666666666666555532 332 444455555555566666666555543 12233222
Q ss_pred ----HHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037537 506 ----LKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 506 ----~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 551 (677)
....+++++++|++..+.....+...+..+++.|.+-+++.-.-+.
T Consensus 693 ~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 693 MAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 4445566789999999999999999999999999988877655443
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=4.5e-16 Score=171.85 Aligned_cols=417 Identities=11% Similarity=0.002 Sum_probs=270.0
Q ss_pred HHHHHHHHHccCChHHHHHHHhhccc--cChhHHHHHHHHHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCCC
Q 037537 37 SNHFILLYSKCGCLSAAHHAFNQTQH--ANVFSFNVLLAAYARQLRIASARQLFDQIPQ--P-DLVSYNTLISAYADCGD 111 (677)
Q Consensus 37 ~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~ 111 (677)
+......+.+.|++++|...|++.+. |+...|..+..+|.+.|++++|+..++...+ | +...|..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 44556677788889999988888777 7777888888888888999888888887664 3 45578888888888899
Q ss_pred hhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcC
Q 037537 112 TESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMG 191 (677)
Q Consensus 112 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 191 (677)
+++|+.-|......+-. +......+ +.-+.+......+...++.-
T Consensus 210 ~~eA~~~~~~~~~~~~~-~~~~~~~~---------------------------------~~~~l~~~a~~~~~~~l~~~- 254 (615)
T TIGR00990 210 YADALLDLTASCIIDGF-RNEQSAQA---------------------------------VERLLKKFAESKAKEILETK- 254 (615)
T ss_pred HHHHHHHHHHHHHhCCC-ccHHHHHH---------------------------------HHHHHHHHHHHHHHHHHhcC-
Confidence 98888887665543211 10000000 00000000112222222221
Q ss_pred CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-hHHHHHHH---HHccCCChHHHHHHHHHHHHhC-C-CCc
Q 037537 192 EIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDM-YTLASILT---AFTSLEDLVGGLQFHAHLIKSG-F-HQN 265 (677)
Q Consensus 192 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~---a~~~~~~~~~a~~~~~~~~~~g-~-~~~ 265 (677)
.++..++..+.. |....+......-+.+-.+ ..|+. ..+..+.. -....++++.|.+.+..+++.+ . +..
T Consensus 255 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~ 330 (615)
T TIGR00990 255 -PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKE 330 (615)
T ss_pred -CCCCCCHHHHHH-HHHHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhh
Confidence 122223332222 2221122222111111111 11110 00100000 0122355667777777766654 2 223
Q ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--CC-hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 037537 266 SHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--PD-LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVIS 342 (677)
Q Consensus 266 ~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 342 (677)
...++.+...|...|+ +++|...|++..+ |+ ...|..+...+... |++++|+..|++..+. .|+.
T Consensus 331 a~a~~~lg~~~~~~g~-~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~--~p~~-------- 398 (615)
T TIGR00990 331 AIALNLRGTFKCLKGK-HLEALADLSKSIELDPRVTQSYIKRASMNLEL-GDPDKAEEDFDKALKL--NSED-------- 398 (615)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHh--CCCC--------
Confidence 3456666677777777 8888888877653 33 44667777777777 8888888888887653 3432
Q ss_pred HhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHH
Q 037537 343 ACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEA 419 (677)
Q Consensus 343 a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A 419 (677)
+.++..+...|...|++++|...|++..+ | +...|..+...+.+.|++++|
T Consensus 399 --------------------------~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 399 --------------------------PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred --------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHH
Confidence 55677788889999999999999988764 3 456778888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccCh-H-------HHHHHHHHHhhcCChHHHH
Q 037537 420 LRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG-E-------HYSCMIDLLGRAGKLTDAE 491 (677)
Q Consensus 420 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~-------~~~~li~~~~~~g~~~~A~ 491 (677)
+..|++.++.. +.+...+..+...+...|++++|...|+...+. .|+. . .++.....+...|++++|.
T Consensus 453 ~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~ 528 (615)
T TIGR00990 453 MATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAE 528 (615)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999998742 344778888899999999999999999998754 3431 1 1222223344569999999
Q ss_pred HHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 492 RLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 492 ~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+++++. ++++|++...+..|+.+|.+.|++++|++.+++..+.
T Consensus 529 ~~~~kA---------------l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 529 NLCEKA---------------LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHH---------------HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 998875 4677888889999999999999999999999998664
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=1.1e-16 Score=159.64 Aligned_cols=417 Identities=16% Similarity=0.145 Sum_probs=269.8
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcch
Q 037537 69 NVLLAAYARQLRIASARQLFDQIPQPDL---VSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNL 145 (677)
Q Consensus 69 ~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 145 (677)
..|..-.-+.|++++|++.-...-+.|. ...-.+-..+.+..+++....--....+.. ..-..+|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~y----------- 119 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAY----------- 119 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHH-----------
Confidence 3455555678999999987665544322 222233356667667766554433332221 1122334
Q ss_pred hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHH
Q 037537 146 CLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMV 223 (677)
Q Consensus 146 ~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 223 (677)
..+.+.+-..|++++|..+++.+ ...| .+..|-.+..++...|+.+.|.+.|.+.+
T Consensus 120 ----------------------sn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~al 177 (966)
T KOG4626|consen 120 ----------------------SNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEAL 177 (966)
T ss_pred ----------------------HHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHH
Confidence 44555555566666666666655 2222 34456666666666666666666666655
Q ss_pred HCCCCCCHhHHHHHHHH-HccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--CCh-h
Q 037537 224 SLQLGLDMYTLASILTA-FTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--PDL-V 299 (677)
Q Consensus 224 ~~g~~pd~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~~~-~ 299 (677)
+ +.|+.+...+-+.- ....|++.+|..-+..+++.. +.-..+|+.|...+-..|+ +..|..-|++... |+. .
T Consensus 178 q--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Ge-i~~aiq~y~eAvkldP~f~d 253 (966)
T KOG4626|consen 178 Q--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGE-IWLAIQHYEEAVKLDPNFLD 253 (966)
T ss_pred h--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcch-HHHHHHHHHHhhcCCCcchH
Confidence 5 33444433332222 223455666666555555442 2223455555555555555 6666666665543 221 3
Q ss_pred hHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcc-hHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 300 LWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDC-SFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 300 ~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
.|-.|-..|... +.+++|+..|.+... ..|+.. .+..+-..+-..| ++.+..-++..+. ++|+.+..|+.|..
T Consensus 254 AYiNLGnV~ke~-~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 254 AYINLGNVYKEA-RIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLAN 328 (966)
T ss_pred HHhhHHHHHHHH-hcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHH
Confidence 444555555555 556666665555443 344432 1222222233334 4444444444332 34555789999999
Q ss_pred HHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 453 (677)
++-..|++.+|.+.+..... | -..+.+.|...|...|.+++|..+|....+ +-|. ...++.|...+-+.|++++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~ 406 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDD 406 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHH
Confidence 99999999999999998765 3 345788899999999999999999999988 6677 5788999999999999999
Q ss_pred HHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 037537 454 GQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA 532 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~ 532 (677)
|...+++.. .++|+ ...|+.+...|-..|+.+.|.+.+.+. +..+|.-+.++..|..+|-.
T Consensus 407 Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA---------------I~~nPt~AeAhsNLasi~kD 468 (966)
T KOG4626|consen 407 AIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRA---------------IQINPTFAEAHSNLASIYKD 468 (966)
T ss_pred HHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHH---------------HhcCcHHHHHHhhHHHHhhc
Confidence 999999988 57887 678999999999999999999998876 46667777889999999999
Q ss_pred cCChHHHHHHHHHHHh
Q 037537 533 SGKWEEVATIRRLMRD 548 (677)
Q Consensus 533 ~g~~~~a~~~~~~m~~ 548 (677)
+|+..+|+.-++...+
T Consensus 469 sGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 469 SGNIPEAIQSYRTALK 484 (966)
T ss_pred cCCcHHHHHHHHHHHc
Confidence 9999999999988765
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=1.5e-14 Score=162.64 Aligned_cols=392 Identities=12% Similarity=0.053 Sum_probs=286.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 037537 101 TLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL 180 (677)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 180 (677)
-.+......|+.++|++++.+..... +.+...+..+...+.+.|++
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~----------------------------------~~~a~~~~~lA~~~~~~g~~ 65 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM----------------------------------QLPARGYAAVAVAYRNLKQW 65 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC----------------------------------CCCHHHHHHHHHHHHHcCCH
Confidence 34556668899999999888876421 22333456777888999999
Q ss_pred hHHHHHHhhc-C-CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHH
Q 037537 181 DEAKRVFYEM-G-EIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLI 258 (677)
Q Consensus 181 ~~A~~~f~~m-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 258 (677)
++|.++|++. . .+.+...+..+...+...|++++|+..+++..+. .|+...+..+..++...|+.+.|...+..++
T Consensus 66 ~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 66 QNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999996 2 2334556778888899999999999999999875 3433227777778889999999999999999
Q ss_pred HhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC-CCh------hhHHHHHhhh-----cccCCCH---HHHHHHHH
Q 037537 259 KSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ-PDL------VLWNTMISGY-----SQKEEYS---DQALGCFK 323 (677)
Q Consensus 259 ~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~-~~~------~~~~~li~~~-----~~~~~~~---~~A~~l~~ 323 (677)
+.. +.+..+...+...+.+.+. .+.|.+.++.... |+. .....++... ... +++ ++|++.++
T Consensus 144 ~~~-P~~~~~~~~la~~l~~~~~-~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~-~r~~~ad~Al~~~~ 220 (765)
T PRK10049 144 PRA-PQTQQYPTEYVQALRNNRL-SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEK-ERYAIADRALAQYD 220 (765)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCC-hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChh-HHHHHHHHHHHHHH
Confidence 875 4455666677888888777 8999999988775 221 0111222222 122 233 77888888
Q ss_pred HHhhc-CCCCCcc-hHHH----HHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCC
Q 037537 324 KLNRV-GYHPDDC-SFVC----VISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMP 396 (677)
Q Consensus 324 ~m~~~-g~~p~~~-t~~~----ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 396 (677)
.+... ...|+.. .+.. .+.+....+ .+.+...+..+.+.+.+.. ......+...|...|++++|...|+++.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P-~~a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIP-PWAQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 88854 2334332 1111 133444556 8888888888887653211 2233336789999999999999999875
Q ss_pred CCC-------cchHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHhccCCHHHHH
Q 037537 397 EHN-------TVSLNSMIAGYAQHGIGMEALRLFEWMLETN-----------IPPTN---ITFVSVLSACAHTGKVAEGQ 455 (677)
Q Consensus 397 ~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~ 455 (677)
+.+ ...+..+..++...|++++|+++++.+.... -.|+. ..+..+...+...|+.++|.
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 422 1245567778899999999999999998752 11332 24456667788999999999
Q ss_pred HHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 037537 456 KYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGK 535 (677)
Q Consensus 456 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~ 535 (677)
.+++.+... .+.+...+..+..++.+.|++++|++.+++. ++++|++...+..++..+...|+
T Consensus 380 ~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a---------------l~l~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 380 MRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKA---------------EVLEPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------HhhCCCChHHHHHHHHHHHHhCC
Confidence 999999864 3335778889999999999999999999876 57889999999999999999999
Q ss_pred hHHHHHHHHHHHhC
Q 037537 536 WEEVATIRRLMRDR 549 (677)
Q Consensus 536 ~~~a~~~~~~m~~~ 549 (677)
|++|..+++.+.+.
T Consensus 443 ~~~A~~~~~~ll~~ 456 (765)
T PRK10049 443 WRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998874
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=5.1e-14 Score=155.26 Aligned_cols=412 Identities=10% Similarity=0.070 Sum_probs=280.9
Q ss_pred HHHccCChHHHHHHHhhccc--cChh-HHHHHHHHHHhcCChhHHHHHhccCCCCCcchHH-HH--HHHHHhCCChhHHH
Q 037537 43 LYSKCGCLSAAHHAFNQTQH--ANVF-SFNVLLAAYARQLRIASARQLFDQIPQPDLVSYN-TL--ISAYADCGDTESAL 116 (677)
Q Consensus 43 ~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~l--i~~~~~~g~~~~A~ 116 (677)
...+.|+++.|...|++..+ |+.. ....++..+...|+.++|+..+++...|+...+. .+ ...|...|++++|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34599999999999999998 4431 2338888999999999999999998877555444 33 45778889999999
Q ss_pred HHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCC
Q 037537 117 SLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKD 195 (677)
Q Consensus 117 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~ 195 (677)
++|+++.+. .|+ ++.++..++..|...++.++|.+.++++ ...|+
T Consensus 123 ely~kaL~~--dP~--------------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 123 ALWQSSLKK--DPT--------------------------------NPDLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred HHHHHHHhh--CCC--------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 999999875 343 3344456778888999999999999998 33455
Q ss_pred eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 037537 196 EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGL-DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLID 274 (677)
Q Consensus 196 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 274 (677)
...+-.++..+...++..+|++.++++.+.. | +...+..+..+..+.|-...|.++...- |+.++-.....
T Consensus 169 ~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~ 240 (822)
T PRK14574 169 VQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ 240 (822)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH
Confidence 4444333333333566666999999998853 5 4566677788888888888877665542 22111111000
Q ss_pred -------HHHHcC---------C--CHHHHHHHHhhCCC-----CCh-hhH----HHHHhhhcccCCCHHHHHHHHHHHh
Q 037537 275 -------LYAKCS---------G--DMRDCMKVFEEIPQ-----PDL-VLW----NTMISGYSQKEEYSDQALGCFKKLN 326 (677)
Q Consensus 275 -------~y~~~g---------~--~~~~A~~~f~~~~~-----~~~-~~~----~~li~~~~~~~~~~~~A~~l~~~m~ 326 (677)
-..+.+ + -.+.|..-++.+.. |.. ..| --.+-++... ++..++++.|+.|.
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r-~r~~~vi~~y~~l~ 319 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR-HQTADLIKEYEAME 319 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhh
Confidence 000000 0 02222222222211 111 111 1122334444 55566666666665
Q ss_pred hcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCC--------
Q 037537 327 RVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEH-------- 398 (677)
Q Consensus 327 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-------- 398 (677)
..|.+ .. ..+--++.++|...+++++|..+|..+...
T Consensus 320 ~~~~~----------------------------------~P-~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~ 364 (822)
T PRK14574 320 AEGYK----------------------------------MP-DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNS 364 (822)
T ss_pred hcCCC----------------------------------CC-HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCC
Confidence 55432 22 456678889999999999999999887432
Q ss_pred -CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCC--H-HHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 399 -NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNI-----------PPT--N-ITFVSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 399 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~p~--~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
+......|.-+|...+++++|..+++++.+..- .|| - ..+..+...+...|++.+|++.++.+..
T Consensus 365 ~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~ 444 (822)
T PRK14574 365 DDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS 444 (822)
T ss_pred cchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122246788899999999999999999987311 122 2 2344556667889999999999999976
Q ss_pred hcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 037537 464 MFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIR 543 (677)
Q Consensus 464 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 543 (677)
. -+-|......+.+++...|.+.+|++.++.. ..++|++..+...++.++...|+|.+|..+.
T Consensus 445 ~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a---------------~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 445 T--APANQNLRIALASIYLARDLPRKAEQELKAV---------------ESLAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred h--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------hhhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4 3337888899999999999999999999766 3567888888999999999999999998888
Q ss_pred HHHHhC
Q 037537 544 RLMRDR 549 (677)
Q Consensus 544 ~~m~~~ 549 (677)
+...+.
T Consensus 508 ~~l~~~ 513 (822)
T PRK14574 508 DDVISR 513 (822)
T ss_pred HHHHhh
Confidence 776654
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=3.4e-14 Score=136.19 Aligned_cols=434 Identities=15% Similarity=0.151 Sum_probs=279.7
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--ccCChHHH-HHHHhhccc---cChhHHHHHHHHHHhcCChh
Q 037537 9 CVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYS--KCGCLSAA-HHAFNQTQH---ANVFSFNVLLAAYARQLRIA 82 (677)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~g~~~~a-~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 82 (677)
...+|.++.+.-+++.|.+.|++.++.+-..|++.-+ ...+..-| .+-|-.|.+ .+..+| |.|++.
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~vA 196 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAVA 196 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccHH
Confidence 4567889999999999999999999988888776533 33333322 244555554 333344 456554
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCC
Q 037537 83 SARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDH 162 (677)
Q Consensus 83 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~ 162 (677)
+ -+|+..+ ....+|..||.|+|+--..+.|.++|++-.....+.+..+|+.+|.+.+-. .++.+...|+...+.|
T Consensus 197 d--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~--~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 197 D--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS--VGKKLVAEMISQKMTP 271 (625)
T ss_pred H--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--ccHHHHHHHHHhhcCC
Confidence 4 4555544 466899999999999999999999999999998999999999999875543 4588899999999999
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHh----hc---CCCCCeeeHHHHHHHHHhCCCchH-HHHHHHHHHH----CCCCC-
Q 037537 163 YASVNNSLLTCYSRNGFLDEAKRVFY----EM---GEIKDEVSWNSMVVAYGQHREGLE-ALQLFQEMVS----LQLGL- 229 (677)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~A~~~f~----~m---~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p- 229 (677)
|..++|+++...++.|+++.|++.+- +| |..|...+|..+|..+.+.+++.+ |..++.+... +.++|
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 99999999999999999887766554 34 889999999999999999888754 4444444432 23333
Q ss_pred ---CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHh
Q 037537 230 ---DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMIS 306 (677)
Q Consensus 230 ---d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~ 306 (677)
|..-|...+..|.+..+.+.|.++++.+.... +++..=.-+ ....-|..+..
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~--------------------N~~~ig~~~-----~~~fYyr~~~~ 406 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD--------------------NWKFIGPDQ-----HRNFYYRKFFD 406 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--------------------chhhcChHH-----HHHHHHHHHHH
Confidence 45668889999999999999999887664321 011000000 01122333444
Q ss_pred hhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCH
Q 037537 307 GYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNL 385 (677)
Q Consensus 307 ~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 385 (677)
..|+. ...+..+..|..|.-.-+-|+..+...+++|....+ ++....++..++..|.... ..+.
T Consensus 407 licq~-es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r-~~l~------------- 471 (625)
T KOG4422|consen 407 LICQM-ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR-SDLR------------- 471 (625)
T ss_pred HHHHH-HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh-HHHH-------------
Confidence 55555 556677777777777667777777777777777777 7777777777776664433 1111
Q ss_pred HHHHHHHhcCC-CCCcchHHHHHHHHHHc-CChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 037537 386 EDARRLFDRMP-EHNTVSLNSMIAGYAQH-GIGME-ALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMK 462 (677)
Q Consensus 386 ~~A~~~~~~~~-~~~~~~~~~li~~~~~~-g~~~~-A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 462 (677)
++.+.++.+-. .|+...-..+-...++. -++.+ ....-.+|.+...+| ...+.++..+.+.|..++|.++|..+.
T Consensus 472 eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~ 549 (625)
T KOG4422|consen 472 EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFL 549 (625)
T ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 11222222211 22212111111111111 01111 122234455443333 345555556678888888888888775
Q ss_pred HhcCCccChHHHH---HHHHHHhhcCChHHHHHHHHhC
Q 037537 463 DMFGFEPEGEHYS---CMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 463 ~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m 497 (677)
+..+--|-....+ -+++.-.+......|...++-|
T Consensus 550 ~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 550 RKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5534344444444 3444555666777777777666
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=1.1e-14 Score=160.40 Aligned_cols=316 Identities=10% Similarity=0.022 Sum_probs=154.0
Q ss_pred HHHHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhH
Q 037537 72 LAAYARQLRIASARQLFDQIPQ--P-DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLI 148 (677)
Q Consensus 72 i~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 148 (677)
+..+.+.|++++|..+++.... | +...+..++......|++++|...|+++.+. .|+.
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~----------------- 109 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQ----------------- 109 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCC-----------------
Confidence 3444455666666655555432 2 2333334444455566666666666665543 2221
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 037537 149 KQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQ 226 (677)
Q Consensus 149 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 226 (677)
...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++.+....
T Consensus 110 ---------------~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 110 ---------------PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred ---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 222334444555556666666555555 2222 23345555555555666666666555554432
Q ss_pred CCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHH
Q 037537 227 LGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNT 303 (677)
Q Consensus 227 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~ 303 (677)
..+. ..+.. +..+...|++++|...+..+++..-.++......+...+.+.|+ .++|...|++..+ .+...+..
T Consensus 175 P~~~-~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~-~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 175 PPRG-DMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGK-YQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CCCH-HHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCCHHHHHH
Confidence 2111 11111 22244555555555555555444322222333333445555555 5555555555432 23344445
Q ss_pred HHhhhcccCCCHHH----HHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHH
Q 037537 304 MISGYSQKEEYSDQ----ALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMY 379 (677)
Q Consensus 304 li~~~~~~~~~~~~----A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y 379 (677)
+...|.+. |++++ |+..|++.... .|+. ..++..+...|
T Consensus 252 Lg~~l~~~-G~~~eA~~~A~~~~~~Al~l--~P~~----------------------------------~~a~~~lg~~l 294 (656)
T PRK15174 252 LGLAYYQS-GRSREAKLQAAEHWRHALQF--NSDN----------------------------------VRIVTLYADAL 294 (656)
T ss_pred HHHHHHHc-CCchhhHHHHHHHHHHHHhh--CCCC----------------------------------HHHHHHHHHHH
Confidence 55555555 55543 45555555442 3332 34445555556
Q ss_pred HccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHH
Q 037537 380 SKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNI-TFVSVLSACAHTGKVAEGQ 455 (677)
Q Consensus 380 ~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~ 455 (677)
.+.|++++|...+++..+ | +...+..+...|.+.|++++|+..|+++.+. .|+.. .+..+..++...|+.++|.
T Consensus 295 ~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~ 372 (656)
T PRK15174 295 IRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAE 372 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHH
Confidence 666666666666555443 2 2334555555566666666666666666553 33332 2222344455566666666
Q ss_pred HHHHHhHH
Q 037537 456 KYFSMMKD 463 (677)
Q Consensus 456 ~~~~~m~~ 463 (677)
..|+...+
T Consensus 373 ~~l~~al~ 380 (656)
T PRK15174 373 SVFEHYIQ 380 (656)
T ss_pred HHHHHHHH
Confidence 66665554
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=3.2e-14 Score=156.60 Aligned_cols=316 Identities=11% Similarity=0.036 Sum_probs=202.0
Q ss_pred HHHHHHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCC
Q 037537 169 SLLTCYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-MYTLASILTAFTSLE 245 (677)
Q Consensus 169 ~li~~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~ 245 (677)
-++....+.|++++|..+++.. ...| +...+..++.+....|++++|++.|+++... .|+ ...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcC
Confidence 3445666778888888887776 2222 3445566666777788888888888888773 343 455666667778888
Q ss_pred ChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC--CCC-hhhHHHHHhhhcccCCCHHHHHHHH
Q 037537 246 DLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP--QPD-LVLWNTMISGYSQKEEYSDQALGCF 322 (677)
Q Consensus 246 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~~~~~~~A~~l~ 322 (677)
+++.|...+..+++.. +.+...+..+...|...|+ .++|...++.+. .|+ ...+..+ ..+.+. |++++|...+
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~-~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~-g~~~eA~~~~ 200 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDK-ELQAISLARTQAQEVPPRGDMIATC-LSFLNK-SRLPEDHDLA 200 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHc-CCHHHHHHHH
Confidence 8888888888887763 4456677777888888888 888888877653 232 2233333 335666 8888888888
Q ss_pred HHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHH----HHHHHhcCCC
Q 037537 323 KKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLED----ARRLFDRMPE 397 (677)
Q Consensus 323 ~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~----A~~~~~~~~~ 397 (677)
+.+......++......+..++...+ .+.+...+....... |+...++..+...|.+.|++++ |...|++..+
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 88766533333333333344555666 666666666666532 3335666667777777777664 5666666543
Q ss_pred --C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChH-
Q 037537 398 --H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGE- 472 (677)
Q Consensus 398 --~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~- 472 (677)
| +...+..+...+...|++++|+..+++..+. .|+ ...+..+..++...|++++|...++.+.+. .|+..
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~ 353 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSK 353 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchH
Confidence 2 3446666677777777777777777777663 333 445555666666777777777777766643 34432
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.+..+..+|...|+.++|.+.+++.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2333455666777777777776655
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.72 E-value=4.6e-14 Score=155.91 Aligned_cols=406 Identities=13% Similarity=0.017 Sum_probs=250.4
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhH
Q 037537 7 KTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIAS 83 (677)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 83 (677)
..+...|+++.|...++..++.. |++..|..+..+|.+.|++++|...+....+ .+..++..+..+|...|++++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 45677899999999999999764 6788899999999999999999999999888 345688889999999999999
Q ss_pred HHHHhccCCCCC---cchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCC
Q 037537 84 ARQLFDQIPQPD---LVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGF 160 (677)
Q Consensus 84 A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~ 160 (677)
|..-|......+ ......++.-+.. ..+........+. .|........+..
T Consensus 213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~~~~~~~~~~~~~-------------------- 266 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET--KPENLPSVTFVGN-------------------- 266 (615)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc--CCCCCCCHHHHHH--------------------
Confidence 998876543211 1111111111111 2222222222222 2221111111111
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCC-eeeHHHHHHHH---HhCCCchHHHHHHHHHHHCC-CCCC-HhH
Q 037537 161 DHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKD-EVSWNSMVVAY---GQHREGLEALQLFQEMVSLQ-LGLD-MYT 233 (677)
Q Consensus 161 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~-~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~pd-~~t 233 (677)
|........+..-++.- ...++ ...+..+...+ ...+++++|++.|++..+.+ ..|+ ...
T Consensus 267 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a 333 (615)
T TIGR00990 267 -------------YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA 333 (615)
T ss_pred -------------HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHH
Confidence 10000011111101111 00010 01111111111 12356667777777666543 2232 344
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcc
Q 037537 234 LASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQ 310 (677)
Q Consensus 234 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 310 (677)
+..+...+...|+++.|...+...++.. +.+...+..+...|...|+ +++|...|++..+ .+...|..+...+..
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGD-PDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5555555566677777777777666552 2234456666666777677 7777777776542 345667777777777
Q ss_pred cCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHH
Q 037537 311 KEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARR 390 (677)
Q Consensus 311 ~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 390 (677)
. |++++|+..|++..+. .|+. ...+..+...|.+.|++++|..
T Consensus 412 ~-g~~~~A~~~~~kal~l--~P~~----------------------------------~~~~~~la~~~~~~g~~~eA~~ 454 (615)
T TIGR00990 412 K-GEFAQAGKDYQKSIDL--DPDF----------------------------------IFSHIQLGVTQYKEGSIASSMA 454 (615)
T ss_pred c-CCHHHHHHHHHHHHHc--CccC----------------------------------HHHHHHHHHHHHHCCCHHHHHH
Confidence 7 8888888888887753 3442 3445566777788888888888
Q ss_pred HHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HH-------HHHHHHHHhccCCHHHHHHHHH
Q 037537 391 LFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN-IT-------FVSVLSACAHTGKVAEGQKYFS 459 (677)
Q Consensus 391 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t-------~~~ll~a~~~~g~~~~a~~~~~ 459 (677)
.|++..+ .+...|+.+...+...|++++|++.|++.++.. |+. .+ ++..+..+...|++++|.++++
T Consensus 455 ~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 455 TFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQWKQDFIEAENLCE 532 (615)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8887654 345678888888888899999999998888743 321 11 1112222334688999999998
Q ss_pred HhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 460 MMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 460 ~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
...+. .|+ ...+..+..+|.+.|++++|.++|++.
T Consensus 533 kAl~l---~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 533 KALII---DPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHhc---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 87753 454 446788889999999999999998876
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.71 E-value=5.7e-14 Score=158.03 Aligned_cols=400 Identities=11% Similarity=-0.019 Sum_probs=265.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChh
Q 037537 6 LKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIA 82 (677)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 82 (677)
+......|+.++|++++....... +.+...+..+..++.+.|++++|.+++++... .+...+..+...+...|+++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 455667788888888888887633 55556677888888888888888888888665 34556667777788888888
Q ss_pred HHHHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhC
Q 037537 83 SARQLFDQIPQ--P-DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCG 159 (677)
Q Consensus 83 ~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g 159 (677)
+|...+++..+ | +.. |..+...+...|+.++|+..+++..+. .|+
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~----------------------------- 148 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQ----------------------------- 148 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-----------------------------
Confidence 88888877654 3 344 777777888888888888888888764 343
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCe------eeHHHHHHHHH-----hCCCc---hHHHHHHHHHHHC
Q 037537 160 FDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDE------VSWNSMVVAYG-----QHREG---LEALQLFQEMVSL 225 (677)
Q Consensus 160 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~ 225 (677)
+..++..+...+.+.|..+.|.+.++.....|+. .....++.... ..+++ ++|++.++.+.+.
T Consensus 149 ---~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 149 ---TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred ---CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 2333345566677778888888888877222221 01122222221 12233 6788888888754
Q ss_pred -CCCCCHh-HHH----HHHHHHccCCChHHHHHHHHHHHHhCCC-CchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--C
Q 037537 226 -QLGLDMY-TLA----SILTAFTSLEDLVGGLQFHAHLIKSGFH-QNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--P 296 (677)
Q Consensus 226 -g~~pd~~-t~~----~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~ 296 (677)
...|+.. .+. ..+.++...++.++|+..++.+.+.+-+ |+. ....+...|...|+ .++|...|+++.+ |
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~-~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQ-PEKAQSILTELFYHPE 303 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCC-cHHHHHHHHHHhhcCC
Confidence 2233321 111 1133455668889999999888877532 221 22235667888888 9999999888753 2
Q ss_pred C-----hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCc--c
Q 037537 297 D-----LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNR--I 369 (677)
Q Consensus 297 ~-----~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~--~ 369 (677)
. ...+..+..++.+. |++++|..+++.+... .|.......+. .-.|+. .
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~-g~~~eA~~~l~~~~~~--~P~~~~~~~~~---------------------~~~p~~~~~ 359 (765)
T PRK10049 304 TIADLSDEELADLFYSLLES-ENYPGALTVTAHTINN--SPPFLRLYGSP---------------------TSIPNDDWL 359 (765)
T ss_pred CCCCCChHHHHHHHHHHHhc-ccHHHHHHHHHHHhhc--CCceEeecCCC---------------------CCCCCchHH
Confidence 1 12355566677778 8899999999888764 23221110000 001110 2
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSAC 445 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 445 (677)
.....+...+...|++++|.++++++.. .+...+..+...+...|++++|++.+++.++. .|| ...+.......
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHH
Confidence 2445667788888999999999988754 35667888888888999999999999988884 466 45666666677
Q ss_pred hccCCHHHHHHHHHHhHHhcCCccChH
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEPEGE 472 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p~~~ 472 (677)
...|++++|..+++.+.+. .|+..
T Consensus 438 l~~~~~~~A~~~~~~ll~~---~Pd~~ 461 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAR---EPQDP 461 (765)
T ss_pred HHhCCHHHHHHHHHHHHHh---CCCCH
Confidence 8888999999999998875 45543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=5.1e-13 Score=141.00 Aligned_cols=502 Identities=13% Similarity=0.066 Sum_probs=282.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccC------hhHHHHHHHHHHhcCChhHHHHH
Q 037537 14 DLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHAN------VFSFNVLLAAYARQLRIASARQL 87 (677)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~ 87 (677)
....++.++....... +.++.+.+.|.+.|-..|++..+..+...+...+ ...|-.+..+|...|+++.|...
T Consensus 251 s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3444555555555554 5566666666676666777777776666665511 22355566677777777777776
Q ss_pred hccCCC--CCc--chHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcch-h------hHHHHHHHHH
Q 037537 88 FDQIPQ--PDL--VSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNL-C------LIKQLHCLAI 156 (677)
Q Consensus 88 f~~m~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~-~------~~~~i~~~~~ 156 (677)
|-+..+ +|- ..+--|.+.|.+.|+++.+...|+...+. .||..--..+|....... . .+..+.....
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 665544 222 23335566677777777777777776653 354443333333222111 1 2222222222
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCh------hHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHC---CC
Q 037537 157 YCGFDHYASVNNSLLTCYSRNGFL------DEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSL---QL 227 (677)
Q Consensus 157 ~~g~~~~~~~~~~li~~~~~~g~~------~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~ 227 (677)
+.- +.|...|-.+-.+|-...-+ ..|..++..-+..+-....|.+...+...|.+++|...|...... -.
T Consensus 408 ~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 408 EQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred hcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 221 33444454444444433222 222222222222344555666666677777777777777666543 12
Q ss_pred CCCHh------HHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CCh
Q 037537 228 GLDMY------TLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDL 298 (677)
Q Consensus 228 ~pd~~------t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~ 298 (677)
.+|.. +--.+.+..-..++.+.|.+.|..+++.. +.-+..|-.|..+--..+. ..+|...+....+ .|.
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~-~~ea~~~lk~~l~~d~~np 564 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNN-LYEASLLLKDALNIDSSNP 564 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccC-cHHHHHHHHHHHhcccCCc
Confidence 22221 11223333344556666667776666552 1111222222222222233 5566666655542 344
Q ss_pred hhHHHHHhhhcccCCCHHHHHHHHHHHhhcC-CCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVG-YHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 299 ~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
..|+.+-.-+... ..+..|.+-|......- ..+|..+..++=+.|.. ..+.+.. +.
T Consensus 565 ~arsl~G~~~l~k-~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~--------------~l~~~~r-----n~--- 621 (1018)
T KOG2002|consen 565 NARSLLGNLHLKK-SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ--------------ALHNPSR-----NP--- 621 (1018)
T ss_pred HHHHHHHHHHHhh-hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH--------------Hhccccc-----Ch---
Confidence 4555554455544 44455555444443321 11232222111111100 0000000 00
Q ss_pred HHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEG 454 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 454 (677)
-...+..++|.++|.++.+ +|...-|.+...++..|++.+|..+|.+..+.. .-+..+|..+...|...|.+..|
T Consensus 622 -ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 -EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHH
Confidence 1123567888999887765 466677888888999999999999999999875 34556888899999999999999
Q ss_pred HHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC-CCCCChHH---------HHHHHHHhccCCCCchhHH
Q 037537 455 QKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM-PFNPGSIA---------LKAANHFLQLEPSNAVPYV 524 (677)
Q Consensus 455 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~---------~~~~~~l~~l~p~~~~~~~ 524 (677)
.++|+...+.+.-.-+..+..+|..++-++|.+.+|.+.+... ...|.... .+.++.+++.++. +..
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~---t~e 776 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKR---TLE 776 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccc---cHH
Confidence 9999999988776678889999999999999999999887654 22333222 5555666666663 222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 037537 525 MLANIYAASGKWEEVATIRRLMRDRGVQ 552 (677)
Q Consensus 525 ~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 552 (677)
..-...+..++|.++|..|...+-+
T Consensus 777 ---ev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 777 ---EVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2233456689999999999887644
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=2e-12 Score=124.27 Aligned_cols=422 Identities=14% Similarity=0.141 Sum_probs=290.5
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh-----hHHHHHHHHHHhCCCCChhHHHHH
Q 037537 96 LVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC-----LIKQLHCLAIYCGFDHYASVNNSL 170 (677)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~~i~~~~~~~g~~~~~~~~~~l 170 (677)
+.+=|.|++ ....|.+.++.-+|++|++.|+......-..++.-.+-... .-.+-|-.+.+.|- .+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence 456677765 45678999999999999999987776665555554332222 11222222333332 122222
Q ss_pred HHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHH
Q 037537 171 LTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGG 250 (677)
Q Consensus 171 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 250 (677)
|.|++.+ ++-+. ..++..++..||.|+++--..+.|.++|++-.....+.+..+|+.+|.+-+ +..+
T Consensus 191 -----K~G~vAd---L~~E~-~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~ 257 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFET-LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVG 257 (625)
T ss_pred -----ccccHHH---HHHhh-cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhcc
Confidence 3455444 44444 456778999999999999999999999999999889999999999998764 3345
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHh----hCC----CCChhhHHHHHhhhcccCCCH-HHHHHH
Q 037537 251 LQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFE----EIP----QPDLVLWNTMISGYSQKEEYS-DQALGC 321 (677)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~----~~~----~~~~~~~~~li~~~~~~~~~~-~~A~~l 321 (677)
+++..+|+...+.||..++|+++...++.|+ ++.|++.+- +|+ +|...+|..+|..+++. +++ .-|..+
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~-F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re-~dp~k~as~~ 335 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGK-FEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRE-SDPQKVASSW 335 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhccc-CCchhhhHHH
Confidence 8899999999999999999999999999998 887766554 443 69999999999999998 555 345566
Q ss_pred HHHHhh----cCCCC----CcchHHHHHHHhhccC-hhHHHHHHHHHHHh------hcccCccchhHHHHHHHHccCCHH
Q 037537 322 FKKLNR----VGYHP----DDCSFVCVISACSNLS-PSLGKQIHALTIKI------EIRSNRISVNNALVAMYSKCGNLE 386 (677)
Q Consensus 322 ~~~m~~----~g~~p----~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~------~~~~~~~~~~~~li~~y~k~g~~~ 386 (677)
+.+++. .-++| |...|.+.++.|.+.. .+.+.+++...... |-......-|..+.+..+....++
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554 23444 3456788999999999 99999999876542 111111345677888889999999
Q ss_pred HHHHHHhcCCC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-C-----------
Q 037537 387 DARRLFDRMPE----HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG-K----------- 450 (677)
Q Consensus 387 ~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~----------- 450 (677)
.-...|+.|.. |+..+..-++++....|.++-.-.++..|+..|..-+...-..++.-+++.. .
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~ 495 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQV 495 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 99999998864 6777777788888888888888888888887774444333333333333222 0
Q ss_pred --------HHH-HHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCc-
Q 037537 451 --------VAE-GQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNA- 520 (677)
Q Consensus 451 --------~~~-a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~- 520 (677)
+.+ ....-.+++ ...-.....++..-++.|.|+.++|.+++.-...+.+.+ |..+
T Consensus 496 ~~ak~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i------------p~~p~ 560 (625)
T KOG4422|consen 496 AFAKCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI------------PRSPL 560 (625)
T ss_pred HHHHHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC------------CCCcc
Confidence 001 111111222 223345567888889999999999999998663332221 1111
Q ss_pred -hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 037537 521 -VPYVMLANIYAASGKWEEVATIRRLMRDRGVQ 552 (677)
Q Consensus 521 -~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 552 (677)
-+..-|.+.-........|+.+++.|...+..
T Consensus 561 lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 561 LNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 12335556666778888999999999776653
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.62 E-value=1.1e-11 Score=136.94 Aligned_cols=423 Identities=13% Similarity=0.053 Sum_probs=295.1
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCChHHHHHHHhhccccChhH-HHHH--HHHHHhcCChhH
Q 037537 8 TCVGRRDLVTGKSLHALYLKNLVPFS-AYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFS-FNVL--LAAYARQLRIAS 83 (677)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~l--i~~~~~~g~~~~ 83 (677)
...+.|++..|+..+.++++.. |.+ +.++ .++..+...|+.++|...+++...|+... +..+ ...|...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3468899999999999999886 333 2344 88899999999999999999998754333 3333 557888899999
Q ss_pred HHHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHh
Q 037537 84 ARQLFDQIPQ--P-DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYC 158 (677)
Q Consensus 84 A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~ 158 (677)
|.++|+++.+ | |...+..++..|...++.++|++.++++... .|+...+..+......... .+.+.+..+++.
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999876 3 4566778888999999999999999999865 5666666333333322222 566666666666
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHH-------HHHHH---------hCCCc---hHHHHHH
Q 037537 159 GFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSM-------VVAYG---------QHREG---LEALQLF 219 (677)
Q Consensus 159 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~l-------i~~~~---------~~g~~---~~A~~~~ 219 (677)
. +.+...+..++....+.|-...|.++..+- |+.++=... +.-.+ ...++ +.|+.-+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~---p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKEN---PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC---ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 4 556778888889999999999998888765 444431110 11111 11222 3455555
Q ss_pred HHHHHC-CCCCCHh-----HHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhC
Q 037537 220 QEMVSL-QLGLDMY-----TLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEI 293 (677)
Q Consensus 220 ~~m~~~-g~~pd~~-----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~ 293 (677)
+.+... +-.|... ...--+-++...++..++.+.++.+...+.+....+--++.++|...+. .++|..+|+++
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~-P~kA~~l~~~~ 353 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL-PEKAAPILSSL 353 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC-cHHHHHHHHHH
Confidence 555442 2223221 2234455778888999999999999988877677788899999999888 99999999987
Q ss_pred CCC---------ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcch-HHHHHHHhhccChhHHHHHHHHHHHhh
Q 037537 294 PQP---------DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCS-FVCVISACSNLSPSLGKQIHALTIKIE 363 (677)
Q Consensus 294 ~~~---------~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~~~i~~~~~~~~ 363 (677)
... +......|.-+|... +++++|..+++.+.+. .|..+. |. .-. ..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~-e~~~~A~~~l~~~~~~--~p~~~~~~~----~~~----------------~~ 410 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNES-EQLDKAYQFAVNYSEQ--TPYQVGVYG----LPG----------------KE 410 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhc-ccHHHHHHHHHHHHhc--CCcEEeccC----CCC----------------CC
Confidence 431 222346778888888 9999999999999863 331110 00 000 00
Q ss_pred cccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHH
Q 037537 364 IRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFV 439 (677)
Q Consensus 364 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 439 (677)
..++-......++..+...|++.+|++.++.+.. -|...+..+...+...|.+.+|.+.++..... .|+ ..+..
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~ 488 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILER 488 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHH
Confidence 0111133445566777788888888888888764 36667888888888888888888888766653 454 55666
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 440 SVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 440 ~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
....+....|++++|..+.+.+.+.
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 7777777888888888888888765
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.8e-11 Score=129.57 Aligned_cols=454 Identities=13% Similarity=0.092 Sum_probs=231.8
Q ss_pred hHHHHHHHhhccc--cChhHHHHHHHHH--HhcCChhHHHHHhccCCC------CCcchHHHHHHHHHhCCChhHHHHHH
Q 037537 50 LSAAHHAFNQTQH--ANVFSFNVLLAAY--ARQLRIASARQLFDQIPQ------PDLVSYNTLISAYADCGDTESALSLF 119 (677)
Q Consensus 50 ~~~a~~~~~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~ 119 (677)
++.|.+.|..+.+ |+- +...|..+. -..+++..|+.+|..... +|+. -.+-..+.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~N-il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDN-ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcc-hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 5777777777766 221 112222222 234677777777776332 2321 12224555777888888888
Q ss_pred HHhHhcCCCCCcccHHHHHHHhhcch---h---hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCC
Q 037537 120 KDMREKRFDTDGFTLSGLITASSNNL---C---LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEI 193 (677)
Q Consensus 120 ~~m~~~g~~p~~~t~~~ll~a~~~~~---~---~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 193 (677)
.+.++. .|+.+.-...|.-....- + .+.+......+.. ..|+.+.+.|-+.|.-.|++..+..+...+ ..
T Consensus 223 ~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~a-i~ 298 (1018)
T KOG2002|consen 223 ERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHA-IK 298 (1018)
T ss_pred HHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHH-HH
Confidence 777653 342211111111110000 0 2222222222111 345556666666666666666666666655 21
Q ss_pred CC------eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhH--HHHHHHHHccCCChHHHHHHHHHHHHhCCCCc
Q 037537 194 KD------EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYT--LASILTAFTSLEDLVGGLQFHAHLIKSGFHQN 265 (677)
Q Consensus 194 ~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 265 (677)
.+ ..+|-.+.++|-..|++++|...|.+-.+. .||.++ +..+...+...|+++.+...|+.+.+.. +.+
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~ 375 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNN 375 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cch
Confidence 11 223555666666666666666666555442 333333 3344555666666666666666666553 334
Q ss_pred hhhHHHHHHHHHHcC----CCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHH
Q 037537 266 SHIGSGLIDLYAKCS----GDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFV 338 (677)
Q Consensus 266 ~~~~~~li~~y~~~g----~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~ 338 (677)
..+...|...|+..+ . .+.|..+..+..+ .|...|-.+-..+-+. ++..++..|....
T Consensus 376 ~etm~iLG~Lya~~~~~~~~-~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~--d~~~sL~~~~~A~------------ 440 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEK-RDKASNVLGKVLEQTPVDSEAWLELAQLLEQT--DPWASLDAYGNAL------------ 440 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHH-HHHHHHHHHHHHhcccccHHHHHHHHHHHHhc--ChHHHHHHHHHHH------------
Confidence 444445555555432 2 3455555554443 2334444444444432 3333344444332
Q ss_pred HHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-------CCcc------hHHH
Q 037537 339 CVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-------HNTV------SLNS 405 (677)
Q Consensus 339 ~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~~~~------~~~~ 405 (677)
..+...+.... +.+.|.+...+...|++++|...|..... +|.. +--.
T Consensus 441 ------------------d~L~~~~~~ip-~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 441 ------------------DILESKGKQIP-PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred ------------------HHHHHcCCCCC-HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 11222233333 55666666666666666666666654432 1221 1111
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhc
Q 037537 406 MIAGYAQHGIGMEALRLFEWMLETNIPPTN-ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRA 484 (677)
Q Consensus 406 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 484 (677)
+...+-..++++.|.+.|....+. .|+- ..|..++......+...+|...+...... ...++..++-+.+.+.+.
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~--d~~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI--DSSNPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHhh
Confidence 333444455666666666666653 3442 33444432223344555555555555542 233344444444455555
Q ss_pred CChHHHHHHHHhC----CCCCChHH-----------------------------HHHHHHHhccCCCCchhHHHHHHHHH
Q 037537 485 GKLTDAERLIEAM----PFNPGSIA-----------------------------LKAANHFLQLEPSNAVPYVMLANIYA 531 (677)
Q Consensus 485 g~~~~A~~~~~~m----~~~~~~~~-----------------------------~~~~~~l~~l~p~~~~~~~~l~~~y~ 531 (677)
..+.-|.+-|+.+ ...+|... .....++++.+|.|..+-+-++-+++
T Consensus 578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLA 657 (1018)
T ss_pred hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhh
Confidence 5555454422222 11222211 33445678899999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCC
Q 037537 532 ASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 532 ~~g~~~~a~~~~~~m~~~g~ 551 (677)
..|+|.+|..+|.+.++...
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred hccCchHHHHHHHHHHHHHh
Confidence 99999999999999998775
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=1.8e-09 Score=109.56 Aligned_cols=445 Identities=11% Similarity=0.074 Sum_probs=262.5
Q ss_pred HHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHH----hHhcCCCCCcccHHHHHHHhhcchh
Q 037537 74 AYARQLRIASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKD----MREKRFDTDGFTLSGLITASSNNLC 146 (677)
Q Consensus 74 ~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~a~~~~~~ 146 (677)
+|++...++.|.++++...+ .+...|.+-...--++|+.+...++..+ +...|+..+...|..=-.+|-..+.
T Consensus 415 AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 44555556666666665554 3555666555555566666666665543 3445666666555555555555554
Q ss_pred --hHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChhHHHHHHhhc-CC-CCCeeeHHHHHHHHHhCCCchHHHHHHH
Q 037537 147 --LIKQLHCLAIYCGFDHY--ASVNNSLLTCYSRNGFLDEAKRVFYEM-GE-IKDEVSWNSMVVAYGQHREGLEALQLFQ 220 (677)
Q Consensus 147 --~~~~i~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~m-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 220 (677)
..+.|...++.-|++.. ..+|+.--..+.+.+.++-|+.+|... .. ..+...|.-....=-..|..++-..+|+
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 55555555555555332 235555556666666666666666554 11 2234456555555555666666666666
Q ss_pred HHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC--CCCh
Q 037537 221 EMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP--QPDL 298 (677)
Q Consensus 221 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~~~~ 298 (677)
+....- +-...-|.....-.-..|+...|+.++.++.+.. +.+..+|-+-+..-+.... ++.|+.+|.+.. .++.
T Consensus 575 kav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e-~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 575 KAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDE-LERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhcccc-HHHHHHHHHHHhccCCcc
Confidence 665531 1123333333444455566666666666666654 3355566666666666555 666666666554 2444
Q ss_pred hhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHH
Q 037537 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAM 378 (677)
Q Consensus 299 ~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~ 378 (677)
..|.--+..---. +..++|++++++.++. -|+- ...|-.+...
T Consensus 652 Rv~mKs~~~er~l-d~~eeA~rllEe~lk~--fp~f----------------------------------~Kl~lmlGQi 694 (913)
T KOG0495|consen 652 RVWMKSANLERYL-DNVEEALRLLEEALKS--FPDF----------------------------------HKLWLMLGQI 694 (913)
T ss_pred hhhHHHhHHHHHh-hhHHHHHHHHHHHHHh--CCch----------------------------------HHHHHHHhHH
Confidence 4443333322223 5566666666655542 3332 3445555566
Q ss_pred HHccCCHHHHHHHHhcCCC--CC-cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037537 379 YSKCGNLEDARRLFDRMPE--HN-TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQ 455 (677)
Q Consensus 379 y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 455 (677)
+-..++++.|++.|..-.+ |+ +..|-.+...--+.|..-.|..++++.+-.+ +-|...|...|..-.+.|+.++|.
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHH
Confidence 6666666666666655444 32 3346666665566666666666666666554 445566666666666666666666
Q ss_pred HHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHH---------------HHHHHHHhccCCCCc
Q 037537 456 KYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIA---------------LKAANHFLQLEPSNA 520 (677)
Q Consensus 456 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---------------~~~~~~l~~l~p~~~ 520 (677)
.+.....+. .+.+-..|..-|.+..+.++-..+...+++....|.... ..=+.+++..+|++.
T Consensus 774 ~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 774 LLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 666666553 333455566666666666666666666666654454443 222345568899999
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEEC
Q 037537 521 VPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVK 563 (677)
Q Consensus 521 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~ 563 (677)
.+|.-+...+..+|.-++-.+++++.... .|.-|..|..+.
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 99999999999999999999999887664 366688887653
No 31
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.53 E-value=1.5e-11 Score=128.45 Aligned_cols=509 Identities=13% Similarity=0.069 Sum_probs=295.5
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc----cChhHHHHHHHHHHhcCChhHHHHHhccCCCCC
Q 037537 20 SLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH----ANVFSFNVLLAAYARQLRIASARQLFDQIPQPD 95 (677)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 95 (677)
.++..+...|+.|+..+|.++|.-|+..|+.+.|. +|..|.- -+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56788889999999999999999999999999999 8888776 44567899999988888887665 688
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHH-hH-------hcCCCCCcccHHHHHHHhhcchh---------hHHHHHHHHHHh
Q 037537 96 LVSYNTLISAYADCGDTESALSLFKD-MR-------EKRFDTDGFTLSGLITASSNNLC---------LIKQLHCLAIYC 158 (677)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~a~~~~~~---------~~~~i~~~~~~~ 158 (677)
..+|+.|..+|.+.|+... ++.-++ |. ..|+-....-|...+.+|..... ..+.+++..++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998765 332222 22 23443344445455555554432 234455556665
Q ss_pred CCCCChhHHHHHHHHHHhcC-----ChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhH
Q 037537 159 GFDHYASVNNSLLTCYSRNG-----FLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYT 233 (677)
Q Consensus 159 g~~~~~~~~~~li~~~~~~g-----~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 233 (677)
+....+..|+.=...+.+.. .+++-..........++..++.+++..-..+|+.+.|..++.+|.+.|++.+..-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 52222222221111122221 2233333333332358999999999999999999999999999999999999998
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCC
Q 037537 234 LASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEE 313 (677)
Q Consensus 234 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~ 313 (677)
|..++-+ .++......+..-|...|+.|+..++.--+-...+.|. ...+....+.-.--....+..+..+...+ .
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~-t~~~~e~sq~~hg~tAavrsaa~rg~~a~-k 316 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ-TKYGEEGSQLAHGFTAAVRSAACRGLLAN-K 316 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh-hhhcccccchhhhhhHHHHHHHhcccHhH-H
Confidence 8888866 78888899999999999999999999877766666433 22221111100000111122222221111 1
Q ss_pred CHH-----HHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHh--hcccCccchhHHHHHHHHc----
Q 037537 314 YSD-----QALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKI--EIRSNRISVNNALVAMYSK---- 381 (677)
Q Consensus 314 ~~~-----~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~--~~~~~~~~~~~~li~~y~k---- 381 (677)
+.+ -....+.+..-.|+......|...... ...| -+...++-..+..- ...++.+..+..++.-|.+
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 111 111111111112222111111111111 0111 22222222211110 0111111111111111111
Q ss_pred ------------------cCCHHHHHHHH------------hcCC----CCCcchH-----------HHHHHHHHHcCCh
Q 037537 382 ------------------CGNLEDARRLF------------DRMP----EHNTVSL-----------NSMIAGYAQHGIG 416 (677)
Q Consensus 382 ------------------~g~~~~A~~~~------------~~~~----~~~~~~~-----------~~li~~~~~~g~~ 416 (677)
.....+..+.. .... ++....| +.++..+...-+.
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 1110 0111222 3334444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh-cCCccChHHHHHHHHHHhhcCChHHHHHHHH
Q 037537 417 MEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM-FGFEPEGEHYSCMIDLLGRAGKLTDAERLIE 495 (677)
Q Consensus 417 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 495 (677)
.+++..-+.....-+ | ..|..+|+-|.+...++.|..+.++.... -.+..|..-+..+.+.+.|-+...+|..+++
T Consensus 476 lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~ 552 (1088)
T KOG4318|consen 476 LKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILY 552 (1088)
T ss_pred HHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHh
Confidence 444433322222111 1 46788888888888999998888877532 0233456678889999999999999999999
Q ss_pred hCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeE
Q 037537 496 AMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSW 559 (677)
Q Consensus 496 ~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 559 (677)
++.. ..+..|.-..+..-+.+.-+..|+.+...++++-....|+.. .|.-|
T Consensus 553 e~ks------------~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 553 EDKS------------SAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred hhhH------------HhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 8853 124445556677888899999999999999999999999876 35545
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.46 E-value=9.6e-09 Score=108.65 Aligned_cols=483 Identities=16% Similarity=0.129 Sum_probs=310.1
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHH
Q 037537 11 GRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQL 87 (677)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 87 (677)
.+|+.++|..++.++++.. +.....|-+|...|-..|+.+++...+-.+.. .|...|-.+-....+.|.++.|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3499999999999999987 77889999999999999999999987654443 6778899999999999999999999
Q ss_pred hccCCCCCcchHHH---HHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHH----Hhhcchh---hHHHHHHHHHH
Q 037537 88 FDQIPQPDLVSYNT---LISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLIT----ASSNNLC---LIKQLHCLAIY 157 (677)
Q Consensus 88 f~~m~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----a~~~~~~---~~~~i~~~~~~ 157 (677)
|.+..+.++.-|-. =+..|-+.|+...|.+-|.++.+.....|-.-+..++. .+....+ .++.+.+...+
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99988744444443 35678899999999999999987643222222333333 3333333 44445555554
Q ss_pred hCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-C------------------------CCCCeeeHH----HHHHHHHh
Q 037537 158 CGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-G------------------------EIKDEVSWN----SMVVAYGQ 208 (677)
Q Consensus 158 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~------------------------~~~~~~~~~----~li~~~~~ 208 (677)
.+-..+...++.++.+|.+...++.|......+ + ..++..+|+ -+.-++.+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 455566677888899999998888888777665 1 112222222 12334444
Q ss_pred CCCchHHHHHHHHHHHCCCCC--CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHH
Q 037537 209 HREGLEALQLFQEMVSLQLGL--DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDC 286 (677)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~p--d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A 286 (677)
....+....+.....+..+.| +..-|.-+..++...|.+..|..++..+.......+..+|--+..+|...|. .+.|
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e-~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE-YEEA 468 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh-HHHH
Confidence 454555555555555555434 5667888999999999999999999999988766778899999999999999 9999
Q ss_pred HHHHhhCCC--CCh-hhHHHHHhhhcccCCCHHHHHHHHHHHhhcC--------CCCCcchHHHHHHHhhccC-hh----
Q 037537 287 MKVFEEIPQ--PDL-VLWNTMISGYSQKEEYSDQALGCFKKLNRVG--------YHPDDCSFVCVISACSNLS-PS---- 350 (677)
Q Consensus 287 ~~~f~~~~~--~~~-~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g--------~~p~~~t~~~ll~a~~~~~-~~---- 350 (677)
...|+.+.. |+. ..--+|-.-+.+. |+.++|++.+..|...+ ..|+.........-+...| .+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~-g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQL-GNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhc-CCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999864 332 2333444556666 99999999999875221 2222222222222222333 22
Q ss_pred HHHHHHHHHHHhh-c----------------ccCccchhHHHHHHHHccCCHHHHHHHHhcCCC------C--Ccc----
Q 037537 351 LGKQIHALTIKIE-I----------------RSNRISVNNALVAMYSKCGNLEDARRLFDRMPE------H--NTV---- 401 (677)
Q Consensus 351 ~~~~i~~~~~~~~-~----------------~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~------~--~~~---- 401 (677)
.+..+.....+.. + .+........++.+-.+.++.....+-...-.. . ...
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 2222221111100 0 000011222334444444443222222211100 1 111
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHH--HH-HHHHHHHhccCCHHHHHHHHHHhHHhcCCccC---hHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNI--PPTNI--TF-VSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE---GEH 473 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~ 473 (677)
.+.-++.++++.+++++|+.+...+....+ .++.. .+ ...+.++...+++..|..+++.|...++...+ ...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 234567788999999999999998887542 22221 22 34456667899999999999999987665444 346
Q ss_pred HHHHHHHHhhcCChHHHHHHHHh
Q 037537 474 YSCMIDLLGRAGKLTDAERLIEA 496 (677)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~ 496 (677)
|++..+...+.|+-.-=.+++..
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~ 730 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMR 730 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67666666666654444444443
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=7.8e-11 Score=123.29 Aligned_cols=438 Identities=11% Similarity=0.045 Sum_probs=261.4
Q ss_pred CHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCC
Q 037537 1 TFRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLR 80 (677)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (677)
||.++|..|+..|+.+.|- +|.-|.-...+....+++.++..-.+.++.+.++ .|-+.+|+.|..+|...||
T Consensus 27 tyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ayr~hGD 98 (1088)
T KOG4318|consen 27 TYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAYRIHGD 98 (1088)
T ss_pred hHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHHHhccc
Confidence 6999999999999999998 9999999999999999999999988888887776 5778899999999999998
Q ss_pred hhH---HHHHhccCCC---CC----cc---------------hHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHH
Q 037537 81 IAS---ARQLFDQIPQ---PD----LV---------------SYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLS 135 (677)
Q Consensus 81 ~~~---A~~~f~~m~~---~~----~~---------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 135 (677)
+.. .++.++.+.. +. .. .-...+.-..-.|.++.+++++..|.... -..++.
T Consensus 99 li~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa---~~~p~~ 175 (1088)
T KOG4318|consen 99 LILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA---WNAPFQ 175 (1088)
T ss_pred hHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc---ccchHH
Confidence 765 2221111111 00 00 01123334445566666666665554321 111222
Q ss_pred HHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc---CCCCCeeeHHHHHHHHHhCCCc
Q 037537 136 GLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM---GEIKDEVSWNSMVVAYGQHREG 212 (677)
Q Consensus 136 ~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~~li~~~~~~g~~ 212 (677)
.+|+-+.....-.+.+.......--.++...+.++++.-...|+++.|..++.+| |..-+..-+-.|+-+ .+..
T Consensus 176 vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~ 252 (1088)
T KOG4318|consen 176 VFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAA 252 (1088)
T ss_pred HHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cccc
Confidence 2466665555566666665544433699999999999999999999999999999 333344444445544 7888
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHH-----------HHHHH-----------------------
Q 037537 213 LEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQF-----------HAHLI----------------------- 258 (677)
Q Consensus 213 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~-----------~~~~~----------------------- 258 (677)
.-+..+++-|.+.|+.|++.|+..-+..+...|....+... ...+.
T Consensus 253 q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~ 332 (1088)
T KOG4318|consen 253 QVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKK 332 (1088)
T ss_pred hHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhH
Confidence 88899999999999999999998877777664432221111 00110
Q ss_pred --HhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCC-------ChhhHHHHHhhhccc-C----------------
Q 037537 259 --KSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQP-------DLVLWNTMISGYSQK-E---------------- 312 (677)
Q Consensus 259 --~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~-~---------------- 312 (677)
=.|+.....+|...+...- .|. -++.+++-..+..| ++..+..++.-|.+. +
T Consensus 333 ~fLlg~d~~~aiws~c~~l~h-Qgk-~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~ 410 (1088)
T KOG4318|consen 333 LFLLGTDILEAIWSMCEKLRH-QGK-GEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSL 410 (1088)
T ss_pred HHHhccccchHHHHHHHHHHH-cCC-CchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 0122222223322222211 233 44444444444321 223333333332221 0
Q ss_pred ----CCHHHHHHHHHHHhhcCCCCCcch----------------------------HHHHHHHhhccC-hhHHHHHHHHH
Q 037537 313 ----EYSDQALGCFKKLNRVGYHPDDCS----------------------------FVCVISACSNLS-PSLGKQIHALT 359 (677)
Q Consensus 313 ----~~~~~A~~l~~~m~~~g~~p~~~t----------------------------~~~ll~a~~~~~-~~~~~~i~~~~ 359 (677)
.+..+..++... ..||..- -..++..|.+.. .......-+..
T Consensus 411 ~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky 485 (1088)
T KOG4318|consen 411 NLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY 485 (1088)
T ss_pred hhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111111 1222110 001111111111 11111111111
Q ss_pred HHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCc------chHHHHHHHHHHcCChHHHHHHHHHHHHCC-CC
Q 037537 360 IKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNT------VSLNSMIAGYAQHGIGMEALRLFEWMLETN-IP 432 (677)
Q Consensus 360 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~ 432 (677)
...-+ +..|..||+......++++|....++...+|. .-+..+.+...+.+....+..++++|.+.- ..
T Consensus 486 e~~lf----~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~ 561 (1088)
T KOG4318|consen 486 EDLLF----AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENE 561 (1088)
T ss_pred HHHHh----hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCC
Confidence 11111 45788999999999999999999998887654 347888889999999999999999998732 23
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 433 PT-NITFVSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 433 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
|+ ..++-.+++.....|..+.-.++++-+..
T Consensus 562 ~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs 593 (1088)
T KOG4318|consen 562 PLVAIILFPLLNSGAPAGQQEKLKKLADILVS 593 (1088)
T ss_pred chHHHHHHHHHhhhhhccCHHHHHHHHHHHHH
Confidence 43 45566666666667766666666655543
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.40 E-value=1.9e-12 Score=128.46 Aligned_cols=155 Identities=17% Similarity=0.258 Sum_probs=106.2
Q ss_pred HHHHHHHccCCHHHHHHHHhcCC-----CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMP-----EHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAH 447 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 447 (677)
.++..|.+.|+++++.++++.+. ..+...|..+...+.+.|+.++|++.|++.++. .|+ ......++..+..
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLID 192 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 34444555566666666655532 245667888888899999999999999999985 564 7788889999999
Q ss_pred cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 448 TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
.|+.+++.++++...+. .+.|...+..+..+|...|+.++|+..+++. ++..|+|+.....+.
T Consensus 193 ~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~---------------~~~~p~d~~~~~~~a 255 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKA---------------LKLNPDDPLWLLAYA 255 (280)
T ss_dssp TCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH---------------HHHSTT-HHHHHHHH
T ss_pred CCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccc---------------ccccccccccccccc
Confidence 99999999999988875 3556778889999999999999999999876 467788999999999
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 037537 528 NIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 528 ~~y~~~g~~~~a~~~~~~m~ 547 (677)
+++...|+.++|.+++++.-
T Consensus 256 ~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 256 DALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHT----------------
T ss_pred cccccccccccccccccccc
Confidence 99999999999999987753
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=9.8e-09 Score=100.61 Aligned_cols=411 Identities=11% Similarity=0.096 Sum_probs=215.9
Q ss_pred HccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHhccCCC--CCc-chHHHHHHHHHhCCChhHHHHH
Q 037537 45 SKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLFDQIPQ--PDL-VSYNTLISAYADCGDTESALSL 118 (677)
Q Consensus 45 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~ 118 (677)
..++++..|+.+|++... .+...|-.-+.+=.++..+..|+.+|+.... |-+ ..|--.+-.--..|+...|.++
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 344555555555555554 3344454555555555555555555554332 211 1222222223334555555555
Q ss_pred HHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCCee
Q 037537 119 FKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKDEV 197 (677)
Q Consensus 119 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~~~ 197 (677)
|++-.+- .|+...|++.|+.=.+-..++.|+.++++. -..|++.
T Consensus 164 ferW~~w-----------------------------------~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~ 208 (677)
T KOG1915|consen 164 FERWMEW-----------------------------------EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVS 208 (677)
T ss_pred HHHHHcC-----------------------------------CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHH
Confidence 5554432 333444455555555555555555555554 2345555
Q ss_pred eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh----HHHHHHHHHccCCChHHHHHHHHHHHHhCCCCc--hhhHHH
Q 037537 198 SWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMY----TLASILTAFTSLEDLVGGLQFHAHLIKSGFHQN--SHIGSG 271 (677)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ 271 (677)
+|--...-=-++|+...|..+|+...+. -.|.. .|++...--.+....+.|.-++...++.- +.+ ...|..
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~ 285 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKK 285 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHH
Confidence 5555555445555555555555544332 11121 22222222233445555666665555542 112 233333
Q ss_pred HHHHHHHcCCC--HHHHHHH-----HhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCc-------
Q 037537 272 LIDLYAKCSGD--MRDCMKV-----FEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDD------- 334 (677)
Q Consensus 272 li~~y~~~g~~--~~~A~~~-----f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~------- 334 (677)
++..=-+.|+. ++++.-- ++++.. -|-.+|--.+.---.. |+.+...++|++.... ++|-.
T Consensus 286 ~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~-g~~~~Ire~yErAIan-vpp~~ekr~W~R 363 (677)
T KOG1915|consen 286 YTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESV-GDKDRIRETYERAIAN-VPPASEKRYWRR 363 (677)
T ss_pred HHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhc-CCHHHHHHHHHHHHcc-CCchhHHHHHHH
Confidence 33333333320 3333222 122222 2334555455444445 6666666666666543 33321
Q ss_pred chHHHHHHHhh---ccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHH----ccCCHHHHHHHHhcCCC--CCcchHH
Q 037537 335 CSFVCVISACS---NLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYS----KCGNLEDARRLFDRMPE--HNTVSLN 404 (677)
Q Consensus 335 ~t~~~ll~a~~---~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~----k~g~~~~A~~~~~~~~~--~~~~~~~ 404 (677)
..|.-+=-+|- ... .+..++++...++ +.|....++.-+--||+ ++.++..|++++....- |..-++-
T Consensus 364 YIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk 441 (677)
T KOG1915|consen 364 YIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFK 441 (677)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHH
Confidence 11111111111 122 4555666655555 33333445554444444 56788888888876543 5556677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhc
Q 037537 405 SMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRA 484 (677)
Q Consensus 405 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 484 (677)
.-|..-.+.++++....+|++.++-+ +-|..+|......=...|+.+.|..+|+.+++...+..-...|-+.|+.=...
T Consensus 442 ~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~ 520 (677)
T KOG1915|consen 442 GYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEE 520 (677)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhc
Confidence 77777778888888888888888854 44567777777777788888888888888887533333345677777777788
Q ss_pred CChHHHHHHHHhCC
Q 037537 485 GKLTDAERLIEAMP 498 (677)
Q Consensus 485 g~~~~A~~~~~~m~ 498 (677)
|.++.|..++++..
T Consensus 521 ~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 521 GEFEKARALYERLL 534 (677)
T ss_pred chHHHHHHHHHHHH
Confidence 88888888888763
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=1.2e-10 Score=112.73 Aligned_cols=457 Identities=13% Similarity=0.146 Sum_probs=260.3
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHccCChHHHHHHHhhccc--cC------hhHHHHHHHHHHh
Q 037537 7 KTCVGRRDLVTGKSLHALYLKNLVPFSAYLSN-HFILLYSKCGCLSAAHHAFNQTQH--AN------VFSFNVLLAAYAR 77 (677)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~--~~------~~~~~~li~~~~~ 77 (677)
+.+.......+|+..++.+++...-|+.-... .+-+.+.+...+.+|.+.++.... |+ ....|.+.-.+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 34555556677777777777776655554432 233456677777888877765554 21 2234555556778
Q ss_pred cCChhHHHHHhccCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHH
Q 037537 78 QLRIASARQLFDQIPQ--PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLA 155 (677)
Q Consensus 78 ~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~ 155 (677)
.|.+++|+.-|+...+ ||..+--.|+-++..-|+-++..+.|.+|..-...||..-|. +..
T Consensus 289 ~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------~~~---------- 351 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------KEK---------- 351 (840)
T ss_pred cccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------CCc----------
Confidence 8999999999988664 776654445555666788888888999988766666665541 000
Q ss_pred HHhCCCCChhHHHHHH-----HHHHhcCChhHHHH-------HHhhcCCCCCeee---HH------------------HH
Q 037537 156 IYCGFDHYASVNNSLL-----TCYSRNGFLDEAKR-------VFYEMGEIKDEVS---WN------------------SM 202 (677)
Q Consensus 156 ~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~~-------~f~~m~~~~~~~~---~~------------------~l 202 (677)
-.|+....|.-| .-.-+.+. ..|++ +..-+ ..||-.. |- .-
T Consensus 352 ----ddp~~~ll~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiapv-i~~~fa~g~dwcle~lk~s~~~~la~dlei~k 425 (840)
T KOG2003|consen 352 ----DDPDDNLLNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAPV-IAPDFAAGCDWCLESLKASQHAELAIDLEINK 425 (840)
T ss_pred ----CCcchHHHHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccc-cccchhcccHHHHHHHHHhhhhhhhhhhhhhH
Confidence 011211111111 11111111 11111 11111 2222111 11 01
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHH--HHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcC
Q 037537 203 VVAYGQHREGLEALQLFQEMVSLQLGLDMYTLA--SILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCS 280 (677)
Q Consensus 203 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 280 (677)
..-|.++|+++.|++++.-..+..-+.-+..-+ .++.-.-.-.++..|.++-+..+... .-+....+.--+.-...|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 234778899999999888886654332222222 22222223346666766666655332 111111111111122237
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHh---hhcccCCCHHHHHHHHHHHhhcCCCCCc-chHHHHHHHhhccChhHHHHHH
Q 037537 281 GDMRDCMKVFEEIPQPDLVLWNTMIS---GYSQKEEYSDQALGCFKKLNRVGYHPDD-CSFVCVISACSNLSPSLGKQIH 356 (677)
Q Consensus 281 ~~~~~A~~~f~~~~~~~~~~~~~li~---~~~~~~~~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~i~ 356 (677)
+ +++|.+.+.+....|...-.+|.. .+-.. |+.++|++.|-++.. +-.+. .....+-+-+..+. +.+..|-
T Consensus 505 d-~dka~~~ykeal~ndasc~ealfniglt~e~~-~~ldeald~f~klh~--il~nn~evl~qianiye~le-d~aqaie 579 (840)
T KOG2003|consen 505 D-LDKAAEFYKEALNNDASCTEALFNIGLTAEAL-GNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLE-DPAQAIE 579 (840)
T ss_pred c-HHHHHHHHHHHHcCchHHHHHHHHhcccHHHh-cCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhh-CHHHHHH
Confidence 7 888888888887666544333322 23334 788889888877643 22222 22222222232222 2222333
Q ss_pred HHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037537 357 ALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPP 433 (677)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 433 (677)
-++....+.|+++.+.+.|.+.|-+.|+-..|.+.+-.--+ -|+.+..-|..-|....-+++|+..|++.-- +.|
T Consensus 580 ~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp 657 (840)
T KOG2003|consen 580 LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP 657 (840)
T ss_pred HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence 33444455565588888888888888888888776543322 3555555566667777778888888888765 688
Q ss_pred CHHHHHHHHHHHh-ccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 434 TNITFVSVLSACA-HTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 434 ~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+..-|..++..|. +.|++.+|..++...-+ .++-|.....-|+...+..|. .+|.++-+++
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl-~d~key~~kl 719 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL-KDAKEYADKL 719 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc-hhHHHHHHHH
Confidence 8888888877774 67888888888888766 466677777788887777763 3444444433
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.37 E-value=1.6e-07 Score=95.91 Aligned_cols=508 Identities=13% Similarity=0.040 Sum_probs=339.0
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHhc
Q 037537 13 RDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLFD 89 (677)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~ 89 (677)
++...|+.++....+.+ |.++..|-+-.+.--..|.+..|+.+...--+ .+..+|-.-+ +....+.|..+..
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHH
Confidence 56677888888888777 55555665555555667777777765543332 2222232211 2333444444444
Q ss_pred cCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCCCCChhHH
Q 037537 90 QIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGFDHYASVN 167 (677)
Q Consensus 90 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~~~~~~~ 167 (677)
......+.+-..-+.+---..+...=.+++++.++. -|+++. |=++.....+ .++.++...++.- +.+...|
T Consensus 340 ~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvecc-p~s~dLw 413 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECC-PQSMDLW 413 (913)
T ss_pred HHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhc-cchHHHH
Confidence 333211111111111111112222233444444443 244332 2223333333 4555555554442 3333333
Q ss_pred HHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHH----HHHCCCCCCHhHHHHHHHHH
Q 037537 168 NSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQE----MVSLQLGLDMYTLASILTAF 241 (677)
Q Consensus 168 ~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~pd~~t~~~ll~a~ 241 (677)
-+|++..-++.|.+++++. ....+...|-+-...=-.+|+.+....+..+ +...|+..+...|..=..+|
T Consensus 414 ----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 414 ----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 4566677788899998877 3445677788777777788888888877755 45678888988888888889
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHH
Q 037537 242 TSLEDLVGGLQFHAHLIKSGFHQNS--HIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSD 316 (677)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~ 316 (677)
-..|..-.+..+....+..|++... .+|..-.+.+.+.+. ++-|+.+|....+ .+...|......--.. |..+
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~-~~carAVya~alqvfp~k~slWlra~~~ek~h-gt~E 567 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA-IECARAVYAHALQVFPCKKSLWLRAAMFEKSH-GTRE 567 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch-HHHHHHHHHHHHhhccchhHHHHHHHHHHHhc-CcHH
Confidence 8889888888888888888875543 567777778888888 9999999887764 4556777766655555 7888
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcC
Q 037537 317 QALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRM 395 (677)
Q Consensus 317 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 395 (677)
+-..+|++....- +-....+.......-..| ...++.+...+..... ++..++-+-+..-.....++.|+.+|.+.
T Consensus 568 sl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p--nseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 568 SLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP--NSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC--CcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8888898888752 222333333333344456 7788888777766543 33678888888888999999999999887
Q ss_pred CC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChH
Q 037537 396 PE--HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGE 472 (677)
Q Consensus 396 ~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 472 (677)
.. +....|.--+...-..+..++|++++++.++. -|+ ...|..+-..+-+.++++.|...|..=.+. .+-.+.
T Consensus 645 r~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ip 720 (913)
T KOG0495|consen 645 RSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIP 720 (913)
T ss_pred hccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCch
Confidence 64 66777877777777788999999999998884 566 567777777888888999888887765532 333466
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQ 552 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 552 (677)
.|-.|.++=-+.|.+-.|..++++.. --+|+|...|...+.+-.+.|..+.|..+..+..+. .
T Consensus 721 LWllLakleEk~~~~~rAR~ildrar---------------lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--c 783 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRAR---------------LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--C 783 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHH---------------hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 78888888889999999999998874 335889999999999999999999999888777654 3
Q ss_pred cCCceeEEE
Q 037537 553 KKPGFSWIE 561 (677)
Q Consensus 553 ~~~~~s~~~ 561 (677)
|..|.-|.+
T Consensus 784 p~sg~LWaE 792 (913)
T KOG0495|consen 784 PSSGLLWAE 792 (913)
T ss_pred CccchhHHH
Confidence 567777754
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.36 E-value=5e-10 Score=116.34 Aligned_cols=278 Identities=9% Similarity=0.085 Sum_probs=168.6
Q ss_pred cCChhHHHHHHhhcCCCC--Cee-eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHH--HHHHHHccCCChHHHH
Q 037537 177 NGFLDEAKRVFYEMGEIK--DEV-SWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLA--SILTAFTSLEDLVGGL 251 (677)
Q Consensus 177 ~g~~~~A~~~f~~m~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~ 251 (677)
.|+++.|++.+... +.. +.. .|-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~-~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRN-ADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 46666666666655 221 111 1222223335666666666666666552 33332222 2233445556666666
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCC
Q 037537 252 QFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYH 331 (677)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~ 331 (677)
+.++.+.+.. +.+..+...+...|.+.|+ +++|.+++..+ .+.+..
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gd-w~~a~~~l~~l--------------------------------~k~~~~ 219 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGA-WSSLLDILPSM--------------------------------AKAHVG 219 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHh-HHHHHHHHHHH--------------------------------HHcCCC
Confidence 6655555544 3344455555555555555 55555555444 443322
Q ss_pred CCcc-------hHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchH
Q 037537 332 PDDC-------SFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSL 403 (677)
Q Consensus 332 p~~~-------t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~ 403 (677)
++.. +|..++..-.... .+...+.+....+ ..+.+ +.+...+...+.+.|+.++|.+++++..+.....-
T Consensus 220 ~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~-~~~~~-~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~ 297 (398)
T PRK10747 220 DEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR-KTRHQ-VALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER 297 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH-HHhCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 1110 1111111111111 1111222222111 11223 77888899999999999999999988766433333
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhh
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGR 483 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 483 (677)
-.++.+....++.+++++..+...+.. +-|...+..+...|...+++++|.+.|+.+.+ ..|+...+..+..++.+
T Consensus 298 l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~ 373 (398)
T PRK10747 298 LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDR 373 (398)
T ss_pred HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHH
Confidence 334556666799999999999999853 44466788899999999999999999999985 48999999999999999
Q ss_pred cCChHHHHHHHHhC
Q 037537 484 AGKLTDAERLIEAM 497 (677)
Q Consensus 484 ~g~~~~A~~~~~~m 497 (677)
.|+.++|.+.+++-
T Consensus 374 ~g~~~~A~~~~~~~ 387 (398)
T PRK10747 374 LHKPEEAAAMRRDG 387 (398)
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999999865
No 39
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=6.4e-10 Score=103.78 Aligned_cols=308 Identities=15% Similarity=0.154 Sum_probs=220.3
Q ss_pred hCCCchHHHHHHHHHHHCCCCC-CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCC---chhhHHHHHHHHHHcCCCH
Q 037537 208 QHREGLEALQLFQEMVSLQLGL-DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQ---NSHIGSGLIDLYAKCSGDM 283 (677)
Q Consensus 208 ~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~ 283 (677)
-++++++|+++|-+|.+. .| +..+-.++-+.|.+.|..+.|..+|..+.++.--+ .......|..-|...|- +
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl-~ 123 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL-L 123 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh-h
Confidence 357889999999999873 22 23334566677888899999999999888753111 12344556777888899 9
Q ss_pred HHHHHHHhhCCCCCh---hhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHH
Q 037537 284 RDCMKVFEEIPQPDL---VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTI 360 (677)
Q Consensus 284 ~~A~~~f~~~~~~~~---~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~ 360 (677)
|.|+.+|..+.+.+. ...-.|+..|-.. .+|++|++.-+++...|-++..+-.
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~q~~~~eI----------------------- 179 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQAT-REWEKAIDVAERLVKLGGQTYRVEI----------------------- 179 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCCccchhHH-----------------------
Confidence 999999999876333 3556678889888 9999999999999887655554333
Q ss_pred HhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 037537 361 KIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEH---NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNIT 437 (677)
Q Consensus 361 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 437 (677)
...|.-|...+....+.+.|..++.+..+. .+..=-.+...+...|+++.|++.++...+++..--..+
T Consensus 180 --------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 180 --------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred --------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 445566677777778889999999887652 333344456778899999999999999998753333567
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHH-HhCCCCCChHHHHHHHHHhccC
Q 037537 438 FVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLI-EAMPFNPGSIALKAANHFLQLE 516 (677)
Q Consensus 438 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~l~~l~ 516 (677)
...|..+|.+.|+.+++...+..+.+. .+....-..+.+.-....-.+.|...+ +....+|+.
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~------------- 315 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM------------- 315 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-------------
Confidence 888999999999999999999988865 444444455555444444455555554 344444443
Q ss_pred CCCchhHHHHHHHH---HhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEE
Q 037537 517 PSNAVPYVMLANIY---AASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFV 570 (677)
Q Consensus 517 p~~~~~~~~l~~~y---~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~ 570 (677)
..+..|+..- +..|++.+.+.+++.|....++..|-+.....+-+.|.|.
T Consensus 316 ----~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 316 ----RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred ----HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 3344455443 2347799999999999988888888887777777777665
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=2.1e-10 Score=117.32 Aligned_cols=282 Identities=15% Similarity=0.125 Sum_probs=202.3
Q ss_pred CchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHHcCCCHHHHHH
Q 037537 211 EGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSG--FHQNSHIGSGLIDLYAKCSGDMRDCMK 288 (677)
Q Consensus 211 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~~A~~ 288 (677)
+..+|+.+|...... +.-+......+-++|-..+++++++.+|+.+.+.. ...+..+|.+.+--+-+.=.----|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 456788888774432 33334666677778888888888888888887653 233556676666544332110111223
Q ss_pred HHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCc
Q 037537 289 VFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNR 368 (677)
Q Consensus 289 ~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~ 368 (677)
+.+.. .-...+|-++-..|.-. ++.+.|++.|++..+ +.|+-
T Consensus 413 Li~~~-~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQ--ldp~f---------------------------------- 454 (638)
T KOG1126|consen 413 LIDTD-PNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQ--LDPRF---------------------------------- 454 (638)
T ss_pred HHhhC-CCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhc--cCCcc----------------------------------
Confidence 33332 33457888888888887 888889888888775 23321
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLN---SMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
..+|+-+..-+.....+|.|...|+.....|+..|| .+...|.++++.+.|+-.|++.++-+ +-|.+....+...+
T Consensus 455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 455 AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQ 533 (638)
T ss_pred chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHH
Confidence 445566666666677899999999988876666555 46778999999999999999998843 33466777777788
Q ss_pred hccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHH
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYV 524 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~ 524 (677)
-+.|+.|+|+++++++.. +.|. +-.--..+..+.-.++.++|+..+++.. ++-|++...|.
T Consensus 534 ~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk---------------~~vP~es~v~~ 595 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELK---------------ELVPQESSVFA 595 (638)
T ss_pred HHhhhhhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHH---------------HhCcchHHHHH
Confidence 889999999999999874 4553 3333344566778899999999998874 67789999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 525 MLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 525 ~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
++..+|-+.|+.+.|+.-|.-|.+..
T Consensus 596 llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 596 LLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHccchHHHHhhHHHhcCC
Confidence 99999999999999999888876643
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.31 E-value=8.3e-10 Score=114.72 Aligned_cols=220 Identities=14% Similarity=0.045 Sum_probs=126.1
Q ss_pred HHHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHH
Q 037537 172 TCYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVG 249 (677)
Q Consensus 172 ~~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 249 (677)
..+...|+++.|...++++ ...| +......+...|.+.|++++|++++..+.+.+..++. .+..+-
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~----------- 228 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE----------- 228 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-----------
Confidence 4455566666666666665 2222 3344555556666666666666666666555433211 110000
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHh
Q 037537 250 GLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLN 326 (677)
Q Consensus 250 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~ 326 (677)
...+..++....+..+ .+...++++.++. .+......+...+... |+.++|.+++.+..
T Consensus 229 ----------------~~a~~~l~~~~~~~~~-~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~-g~~~~A~~~L~~~l 290 (398)
T PRK10747 229 ----------------QQAWIGLMDQAMADQG-SEGLKRWWKNQSRKTRHQVALQVAMAEHLIEC-DDHDTAQQIILDGL 290 (398)
T ss_pred ----------------HHHHHHHHHHHHHhcC-HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
Confidence 0112222222223233 5556666666652 4555666677777777 77788888777776
Q ss_pred hcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchH
Q 037537 327 RVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSL 403 (677)
Q Consensus 327 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~ 403 (677)
+. .||. . -.++......++.+++.+..+...+ .|...+
T Consensus 291 ~~--~~~~-~------------------------------------l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~ 331 (398)
T PRK10747 291 KR--QYDE-R------------------------------------LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLW 331 (398)
T ss_pred hc--CCCH-H------------------------------------HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHH
Confidence 53 2331 1 0111222234666777766666554 244456
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMK 462 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 462 (677)
.++...+.+.|++++|.+.|+...+ ..|+..++..+...+.+.|+.++|.++++...
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6677777778888888888888777 46777777777777888888888877777654
No 42
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=6.2e-12 Score=87.44 Aligned_cols=50 Identities=30% Similarity=0.512 Sum_probs=47.1
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 037537 398 HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH 447 (677)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 447 (677)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 43
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.29 E-value=3.5e-09 Score=111.91 Aligned_cols=318 Identities=16% Similarity=0.181 Sum_probs=221.8
Q ss_pred HHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhHHHHHHHHHccCCChHH
Q 037537 173 CYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGL-DMYTLASILTAFTSLEDLVG 249 (677)
Q Consensus 173 ~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~ 249 (677)
.+++ |++++|.+++.++ ..+.+...|.+|...|-+.|+.++++..+-..- .+.| |..-|..+-.-..+.|+++.
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHH
Confidence 3444 9999999999998 334567789999999999999999988764443 3445 45667777777788899999
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCCh----h----hHHHHHhhhcccCCCHHHHHHH
Q 037537 250 GLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDL----V----LWNTMISGYSQKEEYSDQALGC 321 (677)
Q Consensus 250 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~----~----~~~~li~~~~~~~~~~~~A~~l 321 (677)
|.-.+..+++.. +++....---..+|-+.|+ ...|..-|.++.+.+. . .--.++..|... ++.+.|.+.
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~-~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~-~~~e~a~~~ 302 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGD-LKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH-NERERAAKA 302 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhCh-HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 999999999886 5666666667788888898 8888888887764222 1 111234444445 445666666
Q ss_pred HHHHhhcC-CCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---
Q 037537 322 FKKLNRVG-YHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--- 397 (677)
Q Consensus 322 ~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--- 397 (677)
+......+ -..+ ...++.++.+|.+...++.|......+..
T Consensus 303 le~~~s~~~~~~~-----------------------------------~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~ 347 (895)
T KOG2076|consen 303 LEGALSKEKDEAS-----------------------------------LEDLNILAELFLKNKQSDKALMKIVDDRNRES 347 (895)
T ss_pred HHHHHhhcccccc-----------------------------------ccHHHHHHHHHHHhHHHHHhhHHHHHHhcccc
Confidence 66655421 1111 23334444444444444444433322211
Q ss_pred -----------------------CCcchHH----HHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcc
Q 037537 398 -----------------------HNTVSLN----SMIAGYAQHGIGMEALRLFEWMLETNIPPT--NITFVSVLSACAHT 448 (677)
Q Consensus 398 -----------------------~~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~ 448 (677)
++..+|+ -+.-++......+....+.....+..+.|+ ...|.-+..++...
T Consensus 348 e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~ 427 (895)
T KOG2076|consen 348 EKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNI 427 (895)
T ss_pred CCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhc
Confidence 1222222 222334444444445555555566664444 56788899999999
Q ss_pred CCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHH
Q 037537 449 GKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLAN 528 (677)
Q Consensus 449 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~ 528 (677)
|.+.+|..+|..+....+ .-+...|--+..+|...|..++|.+.+++. +.+.|++..+-..|..
T Consensus 428 ~~~~~Al~~l~~i~~~~~-~~~~~vw~~~a~c~~~l~e~e~A~e~y~kv---------------l~~~p~~~D~Ri~Las 491 (895)
T KOG2076|consen 428 GKYKEALRLLSPITNREG-YQNAFVWYKLARCYMELGEYEEAIEFYEKV---------------LILAPDNLDARITLAS 491 (895)
T ss_pred ccHHHHHHHHHHHhcCcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHH---------------HhcCCCchhhhhhHHH
Confidence 999999999999987622 234678999999999999999999999876 6788999999999999
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 037537 529 IYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 529 ~y~~~g~~~~a~~~~~~m~ 547 (677)
.|-+.|+.++|.+.+..|.
T Consensus 492 l~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHhcCCHHHHHHHHhccc
Confidence 9999999999999999876
No 44
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=6e-12 Score=87.53 Aligned_cols=50 Identities=28% Similarity=0.446 Sum_probs=48.2
Q ss_pred CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHcc
Q 037537 194 KDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTS 243 (677)
Q Consensus 194 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 243 (677)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999875
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.29 E-value=1.9e-09 Score=112.61 Aligned_cols=281 Identities=11% Similarity=0.026 Sum_probs=168.5
Q ss_pred CCCchHHHHHHHHHHHCCCCCCH-hHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHH
Q 037537 209 HREGLEALQLFQEMVSLQLGLDM-YTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCM 287 (677)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~ 287 (677)
.|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.+.+.+..+.+..-.+...+.-.....+...|+ .+.|.
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~-~~~Al 173 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE-LHAAR 173 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC-HHHHH
Confidence 45555555555554432 2322 22223334444555566666655555443211112233334555555566 66666
Q ss_pred HHHhhCCC--C-ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHh---hccC-hhHHHHHHHHHH
Q 037537 288 KVFEEIPQ--P-DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISAC---SNLS-PSLGKQIHALTI 360 (677)
Q Consensus 288 ~~f~~~~~--~-~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~---~~~~-~~~~~~i~~~~~ 360 (677)
..++.+.+ | +...+..+...+.+. |++++|.+++..+.+.++.++......-..+. ...+ .+.+........
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~-~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRS-GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 66666542 2 334555666666666 77777777777777665432221111111111 0111 111111222222
Q ss_pred Hhhc---ccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--CCcch---HHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 037537 361 KIEI---RSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--HNTVS---LNSMIAGYAQHGIGMEALRLFEWMLETNIP 432 (677)
Q Consensus 361 ~~~~---~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 432 (677)
+... ..+ +..+..+...+.+.|+.++|.+++++..+ ||... +..........++.+.+++.+++..+. .
T Consensus 253 ~~~p~~~~~~-~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~ 329 (409)
T TIGR00540 253 KNQPRHRRHN-IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--V 329 (409)
T ss_pred HHCCHHHhCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--C
Confidence 2111 123 78889999999999999999999998876 43331 122222334457788999999888874 4
Q ss_pred CC-H--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 433 PT-N--ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 433 p~-~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
|+ . ....++...|.+.|++++|.++|+..... ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55 4 45668888899999999999999954332 56899999999999999999999999999874
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.27 E-value=1.3e-11 Score=122.52 Aligned_cols=121 Identities=20% Similarity=0.221 Sum_probs=46.8
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG 449 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 449 (677)
..+...|.+.|+.++|.+.|++..+ | |....+.++..+...|+.+++.++++...+.. +.|+..+..+..++...|
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg 228 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLG 228 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccc
Confidence 3344444444444444444444432 2 23344444444444555555444444444432 333334444444455555
Q ss_pred CHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHh
Q 037537 450 KVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEA 496 (677)
Q Consensus 450 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (677)
+.++|..+|+...+. -+.|+.....+.+++...|+.++|.++.++
T Consensus 229 ~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 229 RYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp -HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccc--cccccccccccccccccccccccccccccc
Confidence 555555555554432 112344444455555555555555554443
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=4.5e-09 Score=103.47 Aligned_cols=213 Identities=15% Similarity=0.171 Sum_probs=155.8
Q ss_pred HHcCCCHHHHHHHHhhCCC--C-ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHH
Q 037537 277 AKCSGDMRDCMKVFEEIPQ--P-DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGK 353 (677)
Q Consensus 277 ~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 353 (677)
.-+|+ ...|..-|+.... | +...|--+-..|.+. .+.++....|.+..+- .|
T Consensus 337 fL~g~-~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~-~~~~~~~~~F~~A~~l--dp--------------------- 391 (606)
T KOG0547|consen 337 FLKGD-SLGAQEDFDAAIKLDPAFNSLYIKRAAAYADE-NQSEKMWKDFNKAEDL--DP--------------------- 391 (606)
T ss_pred hhcCC-chhhhhhHHHHHhcCcccchHHHHHHHHHhhh-hccHHHHHHHHHHHhc--CC---------------------
Confidence 34466 6666666666542 2 222255566667777 7777777777776642 23
Q ss_pred HHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 037537 354 QIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETN 430 (677)
Q Consensus 354 ~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 430 (677)
.++.+|..-..++.-.+++++|..-|++... .++..|-.+..+.-+.+++++++..|++.++.
T Consensus 392 -------------~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk- 457 (606)
T KOG0547|consen 392 -------------ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK- 457 (606)
T ss_pred -------------CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 2266777777777788899999999998765 35567777777778888999999999999886
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC---------hHHHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 037537 431 IPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE---------GEHYSCMIDLLGRAGKLTDAERLIEAMPFNP 501 (677)
Q Consensus 431 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 501 (677)
++--+..|+.....+...++++.|.+.|+..++. .|+ +.+--+++-.--+ +++..|.+++++.
T Consensus 458 FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA---- 529 (606)
T KOG0547|consen 458 FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKA---- 529 (606)
T ss_pred CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHH----
Confidence 4555788999999999999999999999988853 454 1111122221122 7788888887765
Q ss_pred ChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 502 GSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 502 ~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
++++|+...+|..|...-.+.|+.++|+++|++-.
T Consensus 530 -----------~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 530 -----------IELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred -----------HccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 68999999999999999999999999999998754
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=5.5e-09 Score=97.67 Aligned_cols=286 Identities=12% Similarity=0.092 Sum_probs=210.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc-cChh------HHHHHHHHHHhcCChhHH
Q 037537 12 RRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH-ANVF------SFNVLLAAYARQLRIASA 84 (677)
Q Consensus 12 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~li~~~~~~g~~~~A 84 (677)
++..+.|..+|-+|.+.. +.+..+.-+|-+.|.+.|..+.|.++|+.+.+ ||.. +.-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467889999999999865 66677788899999999999999999999888 5532 344566778899999999
Q ss_pred HHHhccCCCCC---cchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCC
Q 037537 85 RQLFDQIPQPD---LVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFD 161 (677)
Q Consensus 85 ~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~ 161 (677)
+.+|..+.+.+ ..+...|+..|-+..+|++|++.-+++.+.+-++..+-.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---------------------------
Confidence 99999987633 345667899999999999999999999887644433221
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCC-eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 037537 162 HYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKD-EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILT 239 (677)
Q Consensus 162 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 239 (677)
...|.-|...+....+++.|+.++.+. ...|+ +..--.+...+...|+++.|++.++...+.+..--+.+...+..
T Consensus 180 --AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 180 --AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred --HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 112234445555667888899999887 33333 33334455778899999999999999988775555677888899
Q ss_pred HHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHh-hCC-CCChhhHHHHHhhhcccC--CCH
Q 037537 240 AFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFE-EIP-QPDLVLWNTMISGYSQKE--EYS 315 (677)
Q Consensus 240 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~-~~~-~~~~~~~~~li~~~~~~~--~~~ 315 (677)
+|...|+++++...+..+.+....++ .-..+-+.-..... .+.|..... ++. +|+...+..+|..-.... |..
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G-~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEG-IDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRA 334 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhC-hHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccch
Confidence 99999999999999999888743333 33344443333344 666665554 443 588888888888665431 456
Q ss_pred HHHHHHHHHHhhcCC
Q 037537 316 DQALGCFKKLNRVGY 330 (677)
Q Consensus 316 ~~A~~l~~~m~~~g~ 330 (677)
.+.+.+++.|....+
T Consensus 335 k~sL~~lr~mvge~l 349 (389)
T COG2956 335 KESLDLLRDMVGEQL 349 (389)
T ss_pred hhhHHHHHHHHHHHH
Confidence 777888888876543
No 49
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=2.2e-08 Score=97.44 Aligned_cols=200 Identities=17% Similarity=0.118 Sum_probs=114.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHH
Q 037537 313 EYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRL 391 (677)
Q Consensus 313 ~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 391 (677)
|++++|.+.|++.+...-.-....|+.=|.+- ..+ ++++...+-.+ +++-.++..+.-.+.+.|--..+...|.++
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~kl--h~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKL--HAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 77888888888877543322222333322222 222 44444333221 222223355666666667667777777776
Q ss_pred HhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCc
Q 037537 392 FDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFE 468 (677)
Q Consensus 392 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 468 (677)
+-+... .|+....-|...|-+.|+-.+|.+.+-+--.. ++-|..|..-|...|....-++++..+|++.. -++
T Consensus 581 ~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---liq 656 (840)
T KOG2003|consen 581 LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQ 656 (840)
T ss_pred HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcC
Confidence 655443 35566666777777777777776655443332 34455566666666666666777777777664 457
Q ss_pred cChHHHHHHHH-HHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 037537 469 PEGEHYSCMID-LLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASG 534 (677)
Q Consensus 469 p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g 534 (677)
|+..-|..||. .+.|.|++++|.++++... +.-|.|....-.|..++...|
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~h---------------rkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIH---------------RKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHH---------------HhCccchHHHHHHHHHhcccc
Confidence 77777766654 3456677777777776652 122445555555555555555
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.5e-07 Score=92.46 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=129.7
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPP-TNITFVSVLSA 444 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 444 (677)
..+|+-+..-|....+...|.+.+++..+ .|-..|-.|..+|.-.+...-|+-.|++..+. +| |...|.+|...
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~C 441 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGEC 441 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHH
Confidence 66778888889999999999999987665 57789999999999999999999999999984 55 58899999999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHH
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYV 524 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~ 524 (677)
|.+.++.++|...|...... | ..+...+..|.++|-+.++.++|...+++-... ...--+.+|+...+-.
T Consensus 442 Y~kl~~~~eAiKCykrai~~-~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~--------~~~eg~~~~~t~ka~~ 511 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILL-G-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV--------SELEGEIDDETIKARL 511 (559)
T ss_pred HHHhccHHHHHHHHHHHHhc-c-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------HHhhcccchHHHHHHH
Confidence 99999999999999998874 3 335678999999999999999999998765210 0000122333333444
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 037537 525 MLANIYAASGKWEEVATIRRL 545 (677)
Q Consensus 525 ~l~~~y~~~g~~~~a~~~~~~ 545 (677)
-|..-+.+.++|++|...-.+
T Consensus 512 fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 512 FLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHhhcchHHHHHHHHH
Confidence 477778888999998776554
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=2.9e-07 Score=93.86 Aligned_cols=435 Identities=13% Similarity=0.135 Sum_probs=265.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHhhccc-----cChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHh
Q 037537 34 AYLSNHFILLYSKCGCLSAAHHAFNQTQH-----ANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYAD 108 (677)
Q Consensus 34 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 108 (677)
+.+|..-+....++|++..-+..|++... .....|...+......|-++-+.++++.-.+-++..-+.-|..++.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 35566666777788999999999998877 3445788888888889999999999999888777778889999999
Q ss_pred CCChhHHHHHHHHhHhcC------CCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCCC--CC--hhHHHHHHHHHHh
Q 037537 109 CGDTESALSLFKDMREKR------FDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGFD--HY--ASVNNSLLTCYSR 176 (677)
Q Consensus 109 ~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~--~~--~~~~~~li~~~~~ 176 (677)
.+++++|.+.+...+... .+.+...|.-+..-.++..+ ....+ +.+++.|+. +| ...|++|.+.|.+
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 999999999998876432 23445556666666666665 22222 223344432 23 4689999999999
Q ss_pred cCChhHHHHHHhhc-CCCCCeeeHHHHHHHHHhCC----------------C------chHHHHHHHHHHHCCC-C----
Q 037537 177 NGFLDEAKRVFYEM-GEIKDEVSWNSMVVAYGQHR----------------E------GLEALQLFQEMVSLQL-G---- 228 (677)
Q Consensus 177 ~g~~~~A~~~f~~m-~~~~~~~~~~~li~~~~~~g----------------~------~~~A~~~~~~m~~~g~-~---- 228 (677)
.|.++.|+.++++. ...-.+.-++.+..+|++-. + .+-.+.-|+.+...+. -
T Consensus 261 ~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsV 340 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSV 340 (835)
T ss_pred hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 99999999999986 11223333555555554321 1 1122233333333211 0
Q ss_pred -----C-CHhHHHHHHHHHccCCChHHHHHHHHHHHHhC-----CCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCC
Q 037537 229 -----L-DMYTLASILTAFTSLEDLVGGLQFHAHLIKSG-----FHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPD 297 (677)
Q Consensus 229 -----p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~ 297 (677)
| +..+|..-.. ...|+..+-...+..+++.- ...-...|..+.+.|-..|+ +++|+.+|++..+-+
T Consensus 341 lLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~-l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD-LDDARVIFEKATKVP 417 (835)
T ss_pred HHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc-HHHHHHHHHHhhcCC
Confidence 1 1112211111 22355666667777777642 11223567888999999999 999999999987643
Q ss_pred hh-------hHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCC-----------------cchHHHHHHHhhccC-hhHH
Q 037537 298 LV-------LWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPD-----------------DCSFVCVISACSNLS-PSLG 352 (677)
Q Consensus 298 ~~-------~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~-----------------~~t~~~ll~a~~~~~-~~~~ 352 (677)
-. +|-.....=.+. .+++.|+++.++....--.|. ...|...+..-...| ++..
T Consensus 418 y~~v~dLa~vw~~waemElrh-~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRH-ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhh-hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 33 444444444566 678888888777653211111 111222333334456 7777
Q ss_pred HHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC----CCcc-hHHHHHHHHHH---cCChHHHHHHHH
Q 037537 353 KQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE----HNTV-SLNSMIAGYAQ---HGIGMEALRLFE 424 (677)
Q Consensus 353 ~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~----~~~~-~~~~li~~~~~---~g~~~~A~~l~~ 424 (677)
+.++..++...+... . +.-...-.+-...-++++.+++++-.. |++. .||+-+.-+.+ .-..+.|..+|+
T Consensus 497 k~vYdriidLriaTP-q-ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 497 KAVYDRIIDLRIATP-Q-IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHhcCCH-H-HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 777777777665443 1 112222223344557777777776543 4432 57766655543 224677888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHhHHhcCCccC--hHHHHHHH
Q 037537 425 WMLETNIPPTNITFVSVLSAC--AHTGKVAEGQKYFSMMKDMFGFEPE--GEHYSCMI 478 (677)
Q Consensus 425 ~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li 478 (677)
+.++ |.+|...-+..|+-+- -..|....|..++++... ++++. ...|+..|
T Consensus 575 qaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 575 QALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence 8877 6666654333333322 245777778888877665 45443 34455544
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.20 E-value=1.1e-08 Score=106.94 Aligned_cols=283 Identities=12% Similarity=0.017 Sum_probs=179.0
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCChHHHHHHHhhccc--cChh--HHHHHHHHHHhcCChhHH
Q 037537 10 VGRRDLVTGKSLHALYLKNLVPFSA-YLSNHFILLYSKCGCLSAAHHAFNQTQH--ANVF--SFNVLLAAYARQLRIASA 84 (677)
Q Consensus 10 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~--~~~~li~~~~~~g~~~~A 84 (677)
...|+++.|.+.+....+.. |++ ..+-....+..+.|+.+.|.+.+....+ |+.. +.-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 34578888888887776654 333 3334445667778888888888888655 4432 333346777778888888
Q ss_pred HHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCC
Q 037537 85 RQLFDQIPQ--P-DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFD 161 (677)
Q Consensus 85 ~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~ 161 (677)
...++.+.+ | +...+..+...|.+.|++++|.+++..+.+.++.++. .+..+-.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~---------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH----------------------
Confidence 888888765 3 4556778888888888888888888888877643221 1110000
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHhhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHH-HH
Q 037537 162 HYASVNNSLLTCYSRNGFLDEAKRVFYEMGEI---KDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLA-SI 237 (677)
Q Consensus 162 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~l 237 (677)
..+..++..-......+...+.++.. +. .+...+..+...+...|+.++|.+++++..+.. ||..... .+
T Consensus 230 ---~a~~~~l~~~~~~~~~~~L~~~~~~~-p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~ 303 (409)
T TIGR00540 230 ---KAEIGLLDEAMADEGIDGLLNWWKNQ-PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPL 303 (409)
T ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHHC-CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHH
Confidence 00111111111122233444444444 22 266667777788888888888888888887743 4433210 12
Q ss_pred HH--HHccCCChHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHHcCCCHHHHHHHHhh--C--CCCChhhHHHHHhhhc
Q 037537 238 LT--AFTSLEDLVGGLQFHAHLIKSGFHQNS--HIGSGLIDLYAKCSGDMRDCMKVFEE--I--PQPDLVLWNTMISGYS 309 (677)
Q Consensus 238 l~--a~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~~A~~~f~~--~--~~~~~~~~~~li~~~~ 309 (677)
+. .....++.+.+.+.++...+.. +.|. ....++...+.+.|+ +++|.+.|+. . ..|+...+..+...+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~-~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGE-FIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHccc-HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 22 2233466677777777766652 3333 556677788888888 8888888883 4 2577777778888888
Q ss_pred ccCCCHHHHHHHHHHHh
Q 037537 310 QKEEYSDQALGCFKKLN 326 (677)
Q Consensus 310 ~~~~~~~~A~~l~~~m~ 326 (677)
+. |+.++|.+++++-.
T Consensus 382 ~~-g~~~~A~~~~~~~l 397 (409)
T TIGR00540 382 QA-GDKAEAAAMRQDSL 397 (409)
T ss_pred Hc-CCHHHHHHHHHHHH
Confidence 88 88888888888754
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2e-08 Score=98.34 Aligned_cols=161 Identities=14% Similarity=0.143 Sum_probs=140.2
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPEH---NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
+.+...+.+-|+-.++.++|...|++..+- -...|+.|..-|....+...|++-++..++-. +.|...|-.+..+|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 455667778888899999999999988763 45679999999999999999999999999964 66788999999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHH
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYV 524 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~ 524 (677)
.-.+...-|+-+|++..+ .+| |...|.+|.+.|.+.+++++|.+-|++.-.-.+ -+...++
T Consensus 409 eim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d---------------te~~~l~ 470 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD---------------TEGSALV 470 (559)
T ss_pred HHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc---------------cchHHHH
Confidence 999999999999999985 466 789999999999999999999999998742222 2557899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 037537 525 MLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 525 ~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.|.++|-+.++.++|...+.+-.+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999988765
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.15 E-value=4.1e-06 Score=85.79 Aligned_cols=399 Identities=12% Similarity=0.127 Sum_probs=236.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh-hHHHHHHHHH-HhCCCCChhHHHHHHHHHH
Q 037537 98 SYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC-LIKQLHCLAI-YCGFDHYASVNNSLLTCYS 175 (677)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~~i~~~~~-~~g~~~~~~~~~~li~~~~ 175 (677)
.|++|...|.+.|.++.|.++|++-.+.- .+..-|+.+..+++.-.. ......+... +.|-..+..
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~---------- 317 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDV---------- 317 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhh----------
Confidence 59999999999999999999999877642 344456677777766554 2222222111 111111111
Q ss_pred hcCChhHHHHHHhhc--------------CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC------HhHHH
Q 037537 176 RNGFLDEAKRVFYEM--------------GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD------MYTLA 235 (677)
Q Consensus 176 ~~g~~~~A~~~f~~m--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd------~~t~~ 235 (677)
+++-...-|+.+ ....++..|..-... ..|++.+-...|.+..+. +.|- ...|.
T Consensus 318 ---dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~ 391 (835)
T KOG2047|consen 318 ---DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWV 391 (835)
T ss_pred ---hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHH
Confidence 112222222222 122344556554443 457777888888887653 3332 23466
Q ss_pred HHHHHHccCCChHHHHHHHHHHHHhCCCCc---hhhHHHHHHHHHHcCCCHHHHHHHHhhCCC-----------------
Q 037537 236 SILTAFTSLEDLVGGLQFHAHLIKSGFHQN---SHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ----------------- 295 (677)
Q Consensus 236 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~~A~~~f~~~~~----------------- 295 (677)
.+.+.|-..|+++.|+.+|+...+..++.- ..+|..-..+=.+..+ ++.|.++.+....
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~-~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ 470 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN-FEAALKLMRRATHVPTNPELEYYDNSEPVQ 470 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhcCCCchhhhhhcCCCcHH
Confidence 777778888999999999998887654332 3455555566666666 8888888776531
Q ss_pred ----CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccc
Q 037537 296 ----PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRIS 370 (677)
Q Consensus 296 ----~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~ 370 (677)
++...|+..+.---.. |-++....+++++.+..+.......+-.+- .-... .+.+.++++.-+..=-.|..-.
T Consensus 471 ~rlhrSlkiWs~y~DleEs~-gtfestk~vYdriidLriaTPqii~NyAmf-LEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 471 ARLHRSLKIWSMYADLEESL-GTFESTKAVYDRIIDLRIATPQIIINYAMF-LEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHhHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 1223455555444444 667777778888877554322221111110 11122 4555555554444322333345
Q ss_pred hhHHHHHHHHc---cCCHHHHHHHHhcCCCCC-cchHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCH--HHHHH
Q 037537 371 VNNALVAMYSK---CGNLEDARRLFDRMPEHN-TVSLNSMIAGYA----QHGIGMEALRLFEWMLETNIPPTN--ITFVS 440 (677)
Q Consensus 371 ~~~~li~~y~k---~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ 440 (677)
+|+..+.-+.+ .-+++.|+.+|++..+-- +..--++--.|+ .+|....|++++++.-.. +++.. ..|+.
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni 627 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNI 627 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHH
Confidence 66666655544 236899999999887621 222233333444 478889999999997653 56553 57888
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCccChH---HHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCC
Q 037537 441 VLSACAHTGKVAEGQKYFSMMKDMFGFEPEGE---HYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEP 517 (677)
Q Consensus 441 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p 517 (677)
.|.--...=-+...+.++++.++. -|+.. ..--..++=.+.|.++.|..++.....- .+|
T Consensus 628 ~I~kaae~yGv~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~--------------~dP 690 (835)
T KOG2047|consen 628 YIKKAAEIYGVPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI--------------CDP 690 (835)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc--------------CCC
Confidence 876555444455667788888764 45533 2334456667889999999999765321 122
Q ss_pred -CCchhHHHHHHHHHhcCC
Q 037537 518 -SNAVPYVMLANIYAASGK 535 (677)
Q Consensus 518 -~~~~~~~~l~~~y~~~g~ 535 (677)
.+...|.+.=.-=.++|+
T Consensus 691 r~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 691 RVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred cCChHHHHHHHHHHHhcCC
Confidence 245667777777788888
No 55
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=4.7e-09 Score=107.58 Aligned_cols=278 Identities=16% Similarity=0.098 Sum_probs=183.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc------cChhHHHHHHHHHHhcCC-hhHHHH
Q 037537 14 DLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH------ANVFSFNVLLAAYARQLR-IASARQ 86 (677)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~-~~~A~~ 86 (677)
+.++|...|..+ ...+..+..+...+..+|-..+++++|+++|+.+.+ .+...|+..+-.+-+.-. --.|..
T Consensus 334 ~~~~A~~~~~kl-p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKL-PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhh-HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 567888888884 444456668888889999999999999999998887 566677776654432111 112333
Q ss_pred HhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhH
Q 037537 87 LFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASV 166 (677)
Q Consensus 87 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~ 166 (677)
+.+.++ -.+.+|-++...|.-+++.+.|++.|++..+. .|+ + .+.
T Consensus 413 Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~-f-------------------------------aYa 457 (638)
T KOG1126|consen 413 LIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPR-F-------------------------------AYA 457 (638)
T ss_pred HHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCc-c-------------------------------chh
Confidence 443333 35678999999999999999999999888753 231 2 223
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHH---HHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhHHHHHHHHHc
Q 037537 167 NNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWN---SMVVAYGQHREGLEALQLFQEMVSLQLGL-DMYTLASILTAFT 242 (677)
Q Consensus 167 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~ 242 (677)
|+-+-.=+.....+|.|.+.|+.. ...|...|| .|.-.|.+.++++.|.-.|+...+. -| +.+....+...+-
T Consensus 458 yTLlGhE~~~~ee~d~a~~~fr~A-l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~ 534 (638)
T KOG1126|consen 458 YTLLGHESIATEEFDKAMKSFRKA-LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQH 534 (638)
T ss_pred hhhcCChhhhhHHHHhHHHHHHhh-hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHH
Confidence 344444455567788888888887 555555544 4566788888888888888888763 34 3455555566667
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--C-ChhhHHHHHhhhcccCCCHHHHH
Q 037537 243 SLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--P-DLVLWNTMISGYSQKEEYSDQAL 319 (677)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~~~~~~A~ 319 (677)
+.|+.++|+++++.+...... |+..---....+...++ .++|...++++++ | +...+-.+...|.+. |+.+.|+
T Consensus 535 ~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~-~~eal~~LEeLk~~vP~es~v~~llgki~k~~-~~~~~Al 611 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGR-YVEALQELEELKELVPQESSVFALLGKIYKRL-GNTDLAL 611 (638)
T ss_pred HhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcc-hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH-ccchHHH
Confidence 778888888888887766522 22222223333444466 7788877777763 3 445566666777777 7777777
Q ss_pred HHHHHHhhcCCCCC
Q 037537 320 GCFKKLNRVGYHPD 333 (677)
Q Consensus 320 ~l~~~m~~~g~~p~ 333 (677)
.-|.-+.+-..++.
T Consensus 612 ~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 612 LHFSWALDLDPKGA 625 (638)
T ss_pred HhhHHHhcCCCccc
Confidence 77777766444433
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.11 E-value=8.8e-08 Score=92.64 Aligned_cols=278 Identities=10% Similarity=0.074 Sum_probs=175.2
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHH
Q 037537 209 HREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMK 288 (677)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~ 288 (677)
.|++.+|.++..+-.+.+-.| ...|.....+.-..||.+.+-.++..+.+..-.++..+.-+........|+ .+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d-~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD-YPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC-chhHHH
Confidence 355555555555544433222 223333444444555555555555555544324444444455555555555 555555
Q ss_pred HHhhCC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCc-------chHHHHHHHhhccC-hhHHHHHHH
Q 037537 289 VFEEIP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDD-------CSFVCVISACSNLS-PSLGKQIHA 357 (677)
Q Consensus 289 ~f~~~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~~-~~~~~~i~~ 357 (677)
-.+++. ..+..........|.+. |++.+.+.++..|.+.|+-.|+ .++..+|+-+...+ .+.-+..+.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~-g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRL-GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHh-ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 444432 34555566666666666 6666666666666666654432 45666666665555 333222222
Q ss_pred HHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCC--CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 037537 358 LTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEH--NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN 435 (677)
Q Consensus 358 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 435 (677)
.. ......+ +.+..+++.-+..||+.++|.++..+..++ |.. -...-.+.+-++...-++..++-.+. .+-++
T Consensus 254 ~~-pr~lr~~-p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 254 NQ-PRKLRND-PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred hc-cHHhhcC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 22 2233344 667788999999999999999998876653 333 22233455667777777777666654 24445
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 436 ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 436 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..+.+|-.-|.+.+.+.+|..+|+... ...|+..+|+-+.+++.+.|+.++|.+..++.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 788888899999999999999999777 45899999999999999999999999998865
No 57
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=1.3e-05 Score=79.22 Aligned_cols=441 Identities=13% Similarity=0.062 Sum_probs=211.3
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc--cChh-HHHHHHHHHHhcCChhHHHHH
Q 037537 11 GRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH--ANVF-SFNVLLAAYARQLRIASARQL 87 (677)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~ 87 (677)
.+++...|+.+|+..+... ..+...|..-+.+-.++..+..|+.++++.+. |-+. .|-..+.+=-..|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3456677777887777665 44555666666666677777777777776665 3221 344444444455666667777
Q ss_pred hccCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCC--C
Q 037537 88 FDQIP--QPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGF--D 161 (677)
Q Consensus 88 f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~--~ 161 (677)
|+... +|+...|++.|..-.+-+..+.|..+|++..- +.|+..+|.--.+-=-+.|. .+++++...+..=- .
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 66654 36666677766666666666666666666553 34665555444444334444 45555555444311 1
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCC---eeeHHHHHHHHHhCCCc---hHHHH-----HHHHHHHCCCCC
Q 037537 162 HYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKD---EVSWNSMVVAYGQHREG---LEALQ-----LFQEMVSLQLGL 229 (677)
Q Consensus 162 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~---~~~~~~li~~~~~~g~~---~~A~~-----~~~~m~~~g~~p 229 (677)
.+..++.+....=.++..++.|.-+|.-. ..-|. ...|..+...=-+.|+. ++++- -|+.++..+ +-
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~ 320 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CC
Confidence 11223333333334444555555554433 00111 11122222221222322 22221 112222221 12
Q ss_pred CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCch-------hhHHHHHHHH---HHcCCCHHHHHHHHhhCCC---C
Q 037537 230 DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNS-------HIGSGLIDLY---AKCSGDMRDCMKVFEEIPQ---P 296 (677)
Q Consensus 230 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y---~~~g~~~~~A~~~f~~~~~---~ 296 (677)
|-.+|--.++.-...|+.+...++++.++..- +|-. .+|--+=.++ ....+ ++.++++|+.... .
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed-~ertr~vyq~~l~lIPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAED-VERTRQVYQACLDLIPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhcCc
Confidence 33344444444444455555555555544331 2211 1111111111 11223 4455555433221 1
Q ss_pred ChhhHHHH----HhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccch
Q 037537 297 DLVLWNTM----ISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISV 371 (677)
Q Consensus 297 ~~~~~~~l----i~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~ 371 (677)
...|+.-+ ..--.+. .+...|.+++.... |.-|-..+|..-|..-..++ .+..+.++...+..+ |.+..+
T Consensus 399 kkFtFaKiWlmyA~feIRq-~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe~c~~ 473 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQ-LNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PENCYA 473 (677)
T ss_pred ccchHHHHHHHHHHHHHHH-cccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hHhhHH
Confidence 11222221 1122233 44455555554433 34455555544444444444 555555555444322 222445
Q ss_pred hHHHHHHHHccCCHHHHHHHHhcCCC-C----CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 037537 372 NNALVAMYSKCGNLEDARRLFDRMPE-H----NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACA 446 (677)
Q Consensus 372 ~~~li~~y~k~g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 446 (677)
+......=...|+.+.|+.+|+-... | ....|-+-|.--...|.++.|..+|+++++.. +-..+|.++..--.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~ 551 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAKFEA 551 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhc
Confidence 55555555566777777777765543 3 23456666666666777777777777777642 22224433332211
Q ss_pred -----ccC-----------CHHHHHHHHHHhHHh
Q 037537 447 -----HTG-----------KVAEGQKYFSMMKDM 464 (677)
Q Consensus 447 -----~~g-----------~~~~a~~~~~~m~~~ 464 (677)
..+ .+..|..+|+.+...
T Consensus 552 s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 552 SASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred cccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 222 456777777776543
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.06 E-value=2.5e-08 Score=95.88 Aligned_cols=196 Identities=20% Similarity=0.200 Sum_probs=145.6
Q ss_pred hhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHH
Q 037537 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAM 378 (677)
Q Consensus 299 ~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~ 378 (677)
..+..+...+... |++++|.+.|++..+. .|+. ...+..+...
T Consensus 32 ~~~~~la~~~~~~-~~~~~A~~~~~~~l~~--~p~~----------------------------------~~~~~~la~~ 74 (234)
T TIGR02521 32 KIRVQLALGYLEQ-GDLEVAKENLDKALEH--DPDD----------------------------------YLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHHh--Cccc----------------------------------HHHHHHHHHH
Confidence 4455566666666 7788888888777653 2332 3445566777
Q ss_pred HHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHH
Q 037537 379 YSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPP-TNITFVSVLSACAHTGKVAEG 454 (677)
Q Consensus 379 y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 454 (677)
|...|++++|.+.|++..+ .+...+..+...+...|++++|.+.|++..+....| +...+..+...+...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 7788888888888876653 344567778888888999999999999988743223 244566677778889999999
Q ss_pred HHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 037537 455 QKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASG 534 (677)
Q Consensus 455 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g 534 (677)
...++...+. .+.+...+..+...+.+.|++++|.+.+++.. +..|.++..+..++..+...|
T Consensus 155 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T TIGR02521 155 EKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQ---------------QTYNQTAESLWLGIRIARALG 217 (234)
T ss_pred HHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHHh
Confidence 9999988864 22346678888889999999999999988763 334667778888889999999
Q ss_pred ChHHHHHHHHHHHh
Q 037537 535 KWEEVATIRRLMRD 548 (677)
Q Consensus 535 ~~~~a~~~~~~m~~ 548 (677)
++++|..+.+.+..
T Consensus 218 ~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 218 DVAAAQRYGAQLQK 231 (234)
T ss_pred hHHHHHHHHHHHHh
Confidence 99999998887764
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.03 E-value=2.4e-07 Score=89.68 Aligned_cols=288 Identities=12% Similarity=0.017 Sum_probs=202.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc----cChhHHHHHHHHHHhcCChhHHHHH
Q 037537 12 RRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH----ANVFSFNVLLAAYARQLRIASARQL 87 (677)
Q Consensus 12 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~ 87 (677)
.|++..|..+..+-.+.+ +.....|..-..+-.+.|+.+.+-+...++.+ ++..+.-.........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588999999888877777 44455566667778888999999999998887 3444566666778888999999887
Q ss_pred hccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCCh
Q 037537 88 FDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYA 164 (677)
Q Consensus 88 f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~ 164 (677)
.+...+ .++..-....+.|.+.|++.+...++..|.+.|+--|...- ++ ..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~---------------~l-----------e~ 229 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA---------------RL-----------EQ 229 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH---------------HH-----------HH
Confidence 776543 57788888999999999999999999999988765443211 00 11
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHc
Q 037537 165 SVNNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFT 242 (677)
Q Consensus 165 ~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 242 (677)
.+|+.+++=....+..+.-...++.. ....+...-.+++.-+.+.|+.++|.++..+-.+.+..|+ ...+-.+.
T Consensus 230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l 305 (400)
T COG3071 230 QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRL 305 (400)
T ss_pred HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhc
Confidence 22344444333334444444455555 1223455556677778888888888888888888776666 22233456
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC--CCChhhHHHHHhhhcccCCCHHHHHH
Q 037537 243 SLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP--QPDLVLWNTMISGYSQKEEYSDQALG 320 (677)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~~~~~~~A~~ 320 (677)
+.++...-.+..+...+.- +.++..+.+|...|.+.+. +.+|...|+... .|+..+|+-+-.++.+. |++.+|.+
T Consensus 306 ~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~-w~kA~~~leaAl~~~~s~~~~~~la~~~~~~-g~~~~A~~ 382 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKL-WGKASEALEAALKLRPSASDYAELADALDQL-GEPEEAEQ 382 (400)
T ss_pred CCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhH-HHHHHHHHHHHHhcCCChhhHHHHHHHHHHc-CChHHHHH
Confidence 6677776666666655542 3445778888888888888 899988888664 58888888888899888 88888888
Q ss_pred HHHHHhhcCCCCC
Q 037537 321 CFKKLNRVGYHPD 333 (677)
Q Consensus 321 l~~~m~~~g~~p~ 333 (677)
.+++-...-..|+
T Consensus 383 ~r~e~L~~~~~~~ 395 (400)
T COG3071 383 VRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHhcCCC
Confidence 8887664433343
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=9.7e-07 Score=87.43 Aligned_cols=392 Identities=9% Similarity=0.008 Sum_probs=231.3
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCChHHHHHHHhhccccChh---HHHHHHHHHHhcCChhH
Q 037537 8 TCVGRRDLVTGKSLHALYLKNLVPFS-AYLSNHFILLYSKCGCLSAAHHAFNQTQHANVF---SFNVLLAAYARQLRIAS 83 (677)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~ 83 (677)
-|-+.|++++|++.+...+... |+ +.-|......|...|+|++..+--....+-++. ++..-.+++-..|++++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 4667788888888888888764 55 677777777888888888877776666663333 33334445555666666
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHh--------Hh-cC--CCCCcccHHHHHHHhhcchhhHHHHH
Q 037537 84 ARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDM--------RE-KR--FDTDGFTLSGLITASSNNLCLIKQLH 152 (677)
Q Consensus 84 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~-~g--~~p~~~t~~~ll~a~~~~~~~~~~i~ 152 (677)
|+. -+|-.++..++..+.-..-+.+++... .+ .+ +-|......+.+..+...
T Consensus 202 al~---------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~-------- 264 (606)
T KOG0547|consen 202 ALF---------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD-------- 264 (606)
T ss_pred HHH---------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--------
Confidence 643 122333333333333333333333221 11 11 223332222223222111
Q ss_pred HHHHHhCC----CCChhHHHHHHHHHHhc-CChhHHHHHHhhc----CCCCCee-----------eHHHHHHHHHhCCCc
Q 037537 153 CLAIYCGF----DHYASVNNSLLTCYSRN-GFLDEAKRVFYEM----GEIKDEV-----------SWNSMVVAYGQHREG 212 (677)
Q Consensus 153 ~~~~~~g~----~~~~~~~~~li~~~~~~-g~~~~A~~~f~~m----~~~~~~~-----------~~~~li~~~~~~g~~ 212 (677)
...... ..|...-..+-..|... ..+..|...+.+- ...++.. +.+....-+.-.|+.
T Consensus 265 --~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 265 --PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred --ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 111111 11222222222222221 1234444443332 0111111 111111223446888
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhh
Q 037537 213 LEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEE 292 (677)
Q Consensus 213 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~ 292 (677)
..|.+.|+..+.....++.- |.-+..+|....+.++..+.|....+.. +.++.+|.--..++.-.++ +++|..=|++
T Consensus 343 ~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q-~e~A~aDF~K 419 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQ-YEEAIADFQK 419 (606)
T ss_pred hhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHH-HHHHHHHHHH
Confidence 89999999888865444332 6666777888888899999998888876 4566677766777776677 8999998888
Q ss_pred CCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCcc
Q 037537 293 IPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRI 369 (677)
Q Consensus 293 ~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~ 369 (677)
... .++..|--+--+..+. +.+++++..|++..+. -|+. +
T Consensus 420 ai~L~pe~~~~~iQl~~a~Yr~-~k~~~~m~~Fee~kkk--FP~~----------------------------------~ 462 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCCALYRQ-HKIAESMKTFEEAKKK--FPNC----------------------------------P 462 (606)
T ss_pred HhhcChhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh--CCCC----------------------------------c
Confidence 764 3444555555555667 7888888888887764 2332 7
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCC--CC-------cch--HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHH
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPE--HN-------TVS--LNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NIT 437 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-------~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t 437 (677)
.+||-....+...+++++|.+.|+...+ |+ +.. --+++..- =.+++..|++++++..+. .|- ...
T Consensus 463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A 539 (606)
T KOG0547|consen 463 EVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQA 539 (606)
T ss_pred hHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHH
Confidence 7888888888899999999999987653 22 111 11111111 237788888888888874 444 577
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 438 FVSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 438 ~~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
|.+|...-.+.|++++|.++|+....
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888888888888888887654
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=4.6e-06 Score=79.27 Aligned_cols=435 Identities=12% Similarity=0.019 Sum_probs=232.0
Q ss_pred HHHHccCChHHHHHHHhhccc------cChhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCh
Q 037537 42 LLYSKCGCLSAAHHAFNQTQH------ANVFSFNVLLAAYARQLRIASARQLFDQIPQ---PDLVSYNTLISAYADCGDT 112 (677)
Q Consensus 42 ~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~ 112 (677)
.-+....++..|..+++.-.. .++..| +...|-..|++++|..++..+.+ ++...|-.|.-.+.-.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 334455566666666654443 112222 33455566777777777766543 4555566666666666777
Q ss_pred hHHHHHHHHhHhcCCCCCcccHHHHH-HHhhcchh--hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhh
Q 037537 113 ESALSLFKDMREKRFDTDGFTLSGLI-TASSNNLC--LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYE 189 (677)
Q Consensus 113 ~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~--~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 189 (677)
.+|..+-... |+...-..++ ...-+.++ ...++|..+...- .-.-+|..+.--.-.+.+|.+++.+
T Consensus 108 ~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 7776664433 2222222222 22222233 3333333332211 1112333333333457888888888
Q ss_pred c-CCCCCeeeHHHH-HHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHc--cCCChHHHHHHHHHHHHhCCCCc
Q 037537 190 M-GEIKDEVSWNSM-VVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFT--SLEDLVGGLQFHAHLIKSGFHQN 265 (677)
Q Consensus 190 m-~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~g~~~~ 265 (677)
+ ...|+-...|.- .-+|.+..-++-+.+++....+. -||+ |+..-+.+|. +.=+-..+++-...+.+.+-..
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 7 334555555543 34567777777777777777653 2443 3333333442 2222223333333333322111
Q ss_pred hhhHHHHHHHHHHcC-----CCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHH
Q 037537 266 SHIGSGLIDLYAKCS-----GDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCV 340 (677)
Q Consensus 266 ~~~~~~li~~y~~~g-----~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~l 340 (677)
-..+.-.++.. + -+.|.+++-.+...=...--.++--|.+. ++..+|..+.+++.- ..|-.. +
T Consensus 253 ----~~f~~~l~rHNLVvFrn-gEgALqVLP~L~~~IPEARlNL~iYyL~q-~dVqeA~~L~Kdl~P--ttP~Ey----i 320 (557)
T KOG3785|consen 253 ----YPFIEYLCRHNLVVFRN-GEGALQVLPSLMKHIPEARLNLIIYYLNQ-NDVQEAISLCKDLDP--TTPYEY----I 320 (557)
T ss_pred ----chhHHHHHHcCeEEEeC-CccHHHhchHHHhhChHhhhhheeeeccc-ccHHHHHHHHhhcCC--CChHHH----H
Confidence 01112222221 2 34555555443322222333445556777 899999988876531 222222 2
Q ss_pred HHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-----CCcchHHHHHHHHHHcCC
Q 037537 341 ISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-----HNTVSLNSMIAGYAQHGI 415 (677)
Q Consensus 341 l~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~ 415 (677)
+.+. +..++..-......+.-|.+.|+-.-+ ..+.--.+|.+.+.-..+
T Consensus 321 lKgv--------------------------v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~q 374 (557)
T KOG3785|consen 321 LKGV--------------------------VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQ 374 (557)
T ss_pred HHHH--------------------------HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHH
Confidence 2221 111121111222334556666655433 223345667777777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHH-HHHHHHhhcCChHHHHHHH
Q 037537 416 GMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYS-CMIDLLGRAGKLTDAERLI 494 (677)
Q Consensus 416 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~ 494 (677)
+++.+-.++....--...|.+-| .+..|.+..|.+.+|+++|-.+... .+ .+..+|. .|...|.++|+.+-|.+++
T Consensus 375 FddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 375 FDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 88888888877775433444443 4667888889999999988776532 22 3445554 4567888999999999998
Q ss_pred HhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 495 EAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 495 ~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
-++....+ .-+....+.+-|.++|.+--|.+.|+.+....
T Consensus 452 lk~~t~~e----------------~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 452 LKTNTPSE----------------RFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HhcCCchh----------------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 88753221 12334566777888888888888888877654
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.96 E-value=1e-05 Score=83.28 Aligned_cols=456 Identities=13% Similarity=0.077 Sum_probs=264.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHhhccccC---hhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhC
Q 037537 36 LSNHFILLYSKCGCLSAAHHAFNQTQHAN---VFSFNVLLAAYARQLRIASARQLFDQIPQ---PDLVSYNTLISAYADC 109 (677)
Q Consensus 36 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 109 (677)
.+..+++.| ..+.+..+....+.+.+.. ..+.....-.+...|+.++|......-.. .+.+.|..+.-.+-..
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 344555555 4455666666666655511 11222222234456888888887766554 4567799888888888
Q ss_pred CChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhh
Q 037537 110 GDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYE 189 (677)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 189 (677)
.++++|++.|+..... .||.... +.-|--.-++.|+++.....-.+
T Consensus 89 K~Y~eaiKcy~nAl~~--~~dN~qi--------------------------------lrDlslLQ~QmRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKI--EKDNLQI--------------------------------LRDLSLLQIQMRDYEGYLETRNQ 134 (700)
T ss_pred hhHHHHHHHHHHHHhc--CCCcHHH--------------------------------HHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999988764 4553321 12222222233333333332222
Q ss_pred c-C-CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCHhHHHHHHH------HHccCCChHHHHHHHHHHHHh
Q 037537 190 M-G-EIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQ-LGLDMYTLASILT------AFTSLEDLVGGLQFHAHLIKS 260 (677)
Q Consensus 190 m-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~------a~~~~~~~~~a~~~~~~~~~~ 260 (677)
. . .......|..+..++.-.|++..|..++++..+.. -.|+...+.-... .....|.++.|.+.+......
T Consensus 135 LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 135 LLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ 214 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH
Confidence 2 1 23345678888888888999999999988887654 2455555543322 235566667666655443322
Q ss_pred CCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC--CCChhhHHHHHhhhc-ccCCCHHHHH-HHHHHHhhcCCCCCcch
Q 037537 261 GFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP--QPDLVLWNTMISGYS-QKEEYSDQAL-GCFKKLNRVGYHPDDCS 336 (677)
Q Consensus 261 g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~-~~~~~~~~A~-~l~~~m~~~g~~p~~~t 336 (677)
+......--.-.+.+.+.++ +++|..++..+. .||.+-|+.....+. +- .+.-+++ .+|....+.-..-....
T Consensus 215 -i~Dkla~~e~ka~l~~kl~~-lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~-~d~~~~lk~ly~~ls~~y~r~e~p~ 291 (700)
T KOG1156|consen 215 -IVDKLAFEETKADLLMKLGQ-LEEAVKVYRRLLERNPDNLDYYEGLEKALGKI-KDMLEALKALYAILSEKYPRHECPR 291 (700)
T ss_pred -HHHHHHHhhhHHHHHHHHhh-HHhHHHHHHHHHhhCchhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhhcCcccccch
Confidence 12222333445567777788 999999998876 467776666554443 23 2333444 56665544311111111
Q ss_pred HHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHH----HHHhcCC--------------C
Q 037537 337 FVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDAR----RLFDRMP--------------E 397 (677)
Q Consensus 337 ~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~----~~~~~~~--------------~ 397 (677)
. .-++...... .+.........++.|+ +.++..+...|-.-...+--. .....+. .
T Consensus 292 R-lplsvl~~eel~~~vdkyL~~~l~Kg~----p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 292 R-LPLSVLNGEELKEIVDKYLRPLLSKGV----PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred h-ccHHHhCcchhHHHHHHHHHHHhhcCC----CchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 0 0011111122 3334444444455555 455566666554432222111 1111111 2
Q ss_pred CCcchHHH--HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHH
Q 037537 398 HNTVSLNS--MIAGYAQHGIGMEALRLFEWMLETNIPPTN-ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHY 474 (677)
Q Consensus 398 ~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 474 (677)
|....|+. ++..|-..|+++.|+..++..++. .|+. .-|..=...+.+.|++++|..++++..+. -.||...-
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~IN 442 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAIN 442 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHH
Confidence 34445554 567788999999999999999884 6774 35656667889999999999999999864 34666655
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHH--HHHHHhcCChHHHHHHHHHH
Q 037537 475 SCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVML--ANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l--~~~y~~~g~~~~a~~~~~~m 546 (677)
..-+.-..|+.+.++|.++......++...+ ..+-+++ -.|..+ +.+|.+.|+|.+|++=|...
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~----~~L~~mq----cmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAV----NNLAEMQ----CMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchh----hhHHHhh----hHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 5666777899999999999988765543222 1111111 123332 45577777777777655443
No 63
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.96 E-value=3.9e-06 Score=86.78 Aligned_cols=419 Identities=13% Similarity=0.114 Sum_probs=207.7
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc-------------------------c
Q 037537 9 CVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH-------------------------A 63 (677)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------------------------~ 63 (677)
....|+++.|...++... .| +.....|..+..+....|++.-|.+.|..+-. .
T Consensus 454 aid~~df~ra~afles~~-~~-~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt 531 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLESLE-MG-PDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGT 531 (1636)
T ss_pred ccccCchHHHHHHHHhhc-cC-ccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCc
Confidence 345677888877666543 22 23334566665555555555555555443322 1
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCc-ccHHHHHHHhh
Q 037537 64 NVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDG-FTLSGLITASS 142 (677)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 142 (677)
+.+-..+++..+ ..++.+|..+|-+- | .-..-|..|....+|++|+.+-+-. | .|.- ..-.+.+++..
T Consensus 532 ~fykvra~lail--~kkfk~ae~ifleq---n--~te~aigmy~~lhkwde~i~lae~~---~-~p~~eklk~sy~q~l~ 600 (1636)
T KOG3616|consen 532 DFYKVRAMLAIL--EKKFKEAEMIFLEQ---N--ATEEAIGMYQELHKWDEAIALAEAK---G-HPALEKLKRSYLQALM 600 (1636)
T ss_pred hHHHHHHHHHHH--HhhhhHHHHHHHhc---c--cHHHHHHHHHHHHhHHHHHHHHHhc---C-ChHHHHHHHHHHHHHH
Confidence 111222222222 23567777776331 1 1123455666667777777664422 1 1110 01112222222
Q ss_pred cchh--hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCCeeeHHHHHHHHHhCCCchHHHHHH
Q 037537 143 NNLC--LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKDEVSWNSMVVAYGQHREGLEALQLF 219 (677)
Q Consensus 143 ~~~~--~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 219 (677)
..+. .+.+ +..+..-.-+.|..|.+.|.+..|.+.-..- ....|......+..++.+..-+++|=++|
T Consensus 601 dt~qd~ka~e---------lk~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlf 671 (1636)
T KOG3616|consen 601 DTGQDEKAAE---------LKESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLF 671 (1636)
T ss_pred hcCchhhhhh---------hccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHH
Confidence 2222 1111 1111112235677888888887776554221 12334444555555666665666666666
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhH-HHHHHHHHHcCCCHHHHHHHHhhCCCCCh
Q 037537 220 QEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIG-SGLIDLYAKCSGDMRDCMKVFEEIPQPDL 298 (677)
Q Consensus 220 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~~A~~~f~~~~~~~~ 298 (677)
+++.. | .-.+..+.+-.-+-+|.++-... ++..++.. ..--+-+...|+ ++.|..-|-+..
T Consensus 672 eki~d----~-----dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q-~daainhfiea~---- 733 (1636)
T KOG3616|consen 672 EKIHD----F-----DKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQ-LDAAINHFIEAN---- 733 (1636)
T ss_pred HHhhC----H-----HHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHh-HHHHHHHHHHhh----
Confidence 66543 1 11222222222233333332221 11111100 011112222234 455544443321
Q ss_pred hhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 299 ~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
..-..|.+-... ..+.+|+.+++.+++... -.--|..+-..|++.+ .+.+.+++.. ...++--|+
T Consensus 734 -~~~kaieaai~a-kew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e----------~~~~~dai~ 799 (1636)
T KOG3616|consen 734 -CLIKAIEAAIGA-KEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTE----------ADLFKDAID 799 (1636)
T ss_pred -hHHHHHHHHhhh-hhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHh----------cchhHHHHH
Confidence 011123334445 678888888888876543 2334666777788888 8877777644 445677889
Q ss_pred HHHccCCHHHHHHHHhcCCCC--CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPEH--NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQ 455 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 455 (677)
||.+.|++++|.++-.+...| .++.|-+-..-.-.+|++.+|.++|-... .|+. .|..|-+.|..+...
T Consensus 800 my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMI 870 (1636)
T ss_pred HHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHH
Confidence 999999999999998887655 34456666666777888888777764331 3432 234455555555555
Q ss_pred HHHHHhHHhcCCccC--hHHHHHHHHHHhhcCChHHHHHHHHh
Q 037537 456 KYFSMMKDMFGFEPE--GEHYSCMIDLLGRAGKLTDAERLIEA 496 (677)
Q Consensus 456 ~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (677)
++.++- .|+ ..+-..+..-|-..|++..|++-|-+
T Consensus 871 rlv~k~------h~d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 871 RLVEKH------HGDHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred HHHHHh------ChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 544322 122 12223334444455555555554443
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=5.1e-06 Score=84.06 Aligned_cols=454 Identities=11% Similarity=0.045 Sum_probs=239.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHh--hccccChhHHHHHHHHHHhcCC
Q 037537 3 RQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFN--QTQHANVFSFNVLLAAYARQLR 80 (677)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~li~~~~~~g~ 80 (677)
..+++-+..+..+..|..+-+++...+..| ...--+.+++.-.|.++.|..+.. .+.+.|......+...+.+..+
T Consensus 20 ~~~~r~~l~q~~y~~a~f~adkV~~l~~dp--~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~ 97 (611)
T KOG1173|consen 20 RRLVRDALMQHRYKTALFWADKVAGLTNDP--ADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKE 97 (611)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhccCCh--HHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 456666777777888888888887776444 444446677777777777776654 3344788888888889999999
Q ss_pred hhHHHHHhccCCC---------CC--------cch----HHHHH-------HHHHhCCChhHHHHHHHHhHhcCCCCCcc
Q 037537 81 IASARQLFDQIPQ---------PD--------LVS----YNTLI-------SAYADCGDTESALSLFKDMREKRFDTDGF 132 (677)
Q Consensus 81 ~~~A~~~f~~m~~---------~~--------~~~----~~~li-------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 132 (677)
++.|..++..-.. .| ..- -+.-. ..|....+.++|...|.+... .|..
T Consensus 98 ~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D~~ 173 (611)
T KOG1173|consen 98 WDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL----ADAK 173 (611)
T ss_pred HHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cchh
Confidence 9999999983221 11 111 01111 234445566777777766543 3444
Q ss_pred cHHHHHHHhhcchhhHHHHHHHHHHhCCC----CChhHHHHHHHHHHhcCChhHHHHHH--hhc-CCCCCeeeHHHHHHH
Q 037537 133 TLSGLITASSNNLCLIKQLHCLAIYCGFD----HYASVNNSLLTCYSRNGFLDEAKRVF--YEM-GEIKDEVSWNSMVVA 205 (677)
Q Consensus 133 t~~~ll~a~~~~~~~~~~i~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~f--~~m-~~~~~~~~~~~li~~ 205 (677)
.|..+..-....--.+.+.+..+....+. .+......+...+.-...-++....- +.+ +...++...-.-..-
T Consensus 174 c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~ 253 (611)
T KOG1173|consen 174 CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADR 253 (611)
T ss_pred hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHH
Confidence 44333222111111111111111111100 01111111111110000000000000 001 122333334444556
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHH
Q 037537 206 YGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRD 285 (677)
Q Consensus 206 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~ 285 (677)
+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+++. .+....+|-++...|.-.|+ ..+
T Consensus 254 ~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k-~se 330 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGK-YSE 330 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcC-cHH
Confidence 677899999999999988753 355556666666778888877766666666665 36667788888888888888 999
Q ss_pred HHHHHhhCCCCC---hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcch-HHHHHHHhhccC-hhHHHHHHHHHH
Q 037537 286 CMKVFEEIPQPD---LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCS-FVCVISACSNLS-PSLGKQIHALTI 360 (677)
Q Consensus 286 A~~~f~~~~~~~---~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~-~~~~~~i~~~~~ 360 (677)
|++.|.+...-| ...|-.....|+-. +..++|+..+...-+- -|...- +.-+---|...+ .+.+...+....
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e-~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGE-GEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhc-chHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999998865433 36899999999988 8889999888766542 111110 000111123333 444444433332
Q ss_pred HhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC------C----CcchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 037537 361 KIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE------H----NTVSLNSMIAGYAQHGIGMEALRLFEWMLETN 430 (677)
Q Consensus 361 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 430 (677)
++.|.++.+.+-+.-+.-+.+.+.+|...|+.... + -..+|+.|..+|.+.+++++|+..|++.+...
T Consensus 408 --ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 408 --AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred --hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 22233344444444444444455555554443321 0 11123444444445555555555555544432
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHH
Q 037537 431 IPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHY 474 (677)
Q Consensus 431 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 474 (677)
+-|..|+.++.-.+...|+++.|...|.+.. .+.|+..+-
T Consensus 486 -~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~ 525 (611)
T KOG1173|consen 486 -PKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFI 525 (611)
T ss_pred -CCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHH
Confidence 3334444444444444555555555544443 344444333
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.1e-06 Score=88.65 Aligned_cols=479 Identities=13% Similarity=0.064 Sum_probs=259.9
Q ss_pred hHHHHHHHHHccCChHHHHHHHhhccc--cChhHHHHHHHHHHhcCChhHHHHHhcc--CCCCCcchHHHHHHHHHhCCC
Q 037537 36 LSNHFILLYSKCGCLSAAHHAFNQTQH--ANVFSFNVLLAAYARQLRIASARQLFDQ--IPQPDLVSYNTLISAYADCGD 111 (677)
Q Consensus 36 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~--m~~~~~~~~~~li~~~~~~g~ 111 (677)
-+..+++-+..+.++..|.-+-+.+.. .|+...--+.++|.-.|+++.|..+... +.+.|..+.......+.+..+
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~ 97 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKE 97 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 344444444444445555544444433 4555555677888888888888777653 556888888999999999999
Q ss_pred hhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcC
Q 037537 112 TESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMG 191 (677)
Q Consensus 112 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 191 (677)
+++|+.++.+-. +.-+.+.|-..-.++.-..+.+...+..-.++++ +-.--..|......++|+..|.+.
T Consensus 98 ~~~al~vl~~~~---~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essi------c~lRgk~y~al~n~~~ar~~Y~~A- 167 (611)
T KOG1173|consen 98 WDQALLVLGRGH---VETNPFSYYEKDAANTLELNSAGEDLMINLESSI------CYLRGKVYVALDNREEARDKYKEA- 167 (611)
T ss_pred HHHHHHHhcccc---hhhcchhhcchhhhceeccCcccccccccchhce------eeeeeehhhhhccHHHHHHHHHHH-
Confidence 999999987331 1112222210000100000001000000011110 000013345556678888888877
Q ss_pred CCCCeeeHHHHHHHHHhCC-CchHHHHHHHHHHHC-CCCCCHhHHHHHHHHH-ccCCChHHHHHHHHHHHHhCCCCchhh
Q 037537 192 EIKDEVSWNSMVVAYGQHR-EGLEALQLFQEMVSL-QLGLDMYTLASILTAF-TSLEDLVGGLQFHAHLIKSGFHQNSHI 268 (677)
Q Consensus 192 ~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~a~-~~~~~~~~a~~~~~~~~~~g~~~~~~~ 268 (677)
...|+..+.++...-...= -.++-+++|+...-. -.+-+....-.+.... ++..+.+ ....-.+..-.++..+..+
T Consensus 168 l~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~-~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 168 LLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEE-SLTRNEDESLIGLAENLDL 246 (611)
T ss_pred HhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccc-ccccCchhhhhhhhhcHHH
Confidence 6666666555443222111 111223333221000 0111222222222211 0000000 0000000111223445555
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhCCCC---ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhh
Q 037537 269 GSGLIDLYAKCSGDMRDCMKVFEEIPQP---DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACS 345 (677)
Q Consensus 269 ~~~li~~y~~~g~~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 345 (677)
.....+-+...++ +.+..++++.+.+. +...+..-|..+... |+..+-+.+=.+|.+. .+-...+|-++---+-
T Consensus 247 l~~~ad~~y~~c~-f~~c~kit~~lle~dpfh~~~~~~~ia~l~el-~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 247 LAEKADRLYYGCR-FKECLKITEELLEKDPFHLPCLPLHIACLYEL-GKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHcCh-HHHHHHHhHHHHhhCCCCcchHHHHHHHHHHh-cccchHHHHHHHHHHh-CCCCCcchhhHHHHHH
Confidence 5556666666666 88888888777643 334455556666666 6666666666666653 2223455555544444
Q ss_pred ccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHH
Q 037537 346 NLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALR 421 (677)
Q Consensus 346 ~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 421 (677)
..+ .+.++..+.... .+++.....|-.+...|+-.|.-|.|...+....+ .....+--+..-|.+.+..+.|.+
T Consensus 324 ~i~k~seARry~SKat--~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKAT--TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHh--hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 445 666666655443 23343355666777777777777776665543322 011111123334666677777777
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCcc----ChHHHHHHHHHHhhcCChHHHHHHHH
Q 037537 422 LFEWMLETNIPP-TNITFVSVLSACAHTGKVAEGQKYFSMMKDMF-GFEP----EGEHYSCMIDLLGRAGKLTDAERLIE 495 (677)
Q Consensus 422 l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~ 495 (677)
.|.+... +-| |+..++-+.-...+.+.+.+|..+|+.....- .+.+ ...+++.|..+|.|.+++++|...++
T Consensus 402 Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 402 FFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 7777766 344 45566655555556777888888887766210 0111 23456667777778888888887777
Q ss_pred hCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 496 AMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 496 ~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
+. +.+.|.++.+|.+++-+|...|+.+.|.+.|.+..
T Consensus 480 ~a---------------L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 480 KA---------------LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HH---------------HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55 68889999999999999999999999999999844
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.94 E-value=4.6e-08 Score=94.07 Aligned_cols=165 Identities=18% Similarity=0.215 Sum_probs=139.3
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
...+..+...|.+.|++++|...|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 55677888999999999999999998754 345678888999999999999999999999864 44567788888889
Q ss_pred hccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHH
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVM 525 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~ 525 (677)
...|++++|.+.++...+..........+..+...+.+.|++++|.+.+++. ++..|+++..+..
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------~~~~~~~~~~~~~ 174 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRA---------------LQIDPQRPESLLE 174 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCcCChHHHHH
Confidence 9999999999999999875222234566777888999999999999999876 3566778889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 037537 526 LANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 526 l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++.+|...|++++|...+++..+.
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998775
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.90 E-value=5.9e-06 Score=86.63 Aligned_cols=426 Identities=15% Similarity=0.143 Sum_probs=238.4
Q ss_pred cChhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCccc-HHHHH
Q 037537 63 ANVFSFNVLLAAYARQLRIASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFT-LSGLI 138 (677)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll 138 (677)
.|+.+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-....-.|+..+ +-..-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4778888888889999999999999988654 3456789999999999999999998887654432343333 33333
Q ss_pred HHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHH-HhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhC--------
Q 037537 139 TASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCY-SRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQH-------- 209 (677)
Q Consensus 139 ~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~-~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~-------- 209 (677)
+.|.+.....++..+++.+ .|+.| .+++.+. ...|-.+.-+|...
T Consensus 401 klc~e~l~~~eegldYA~k------------ai~~~~~~~~~l~--------------~~~~l~lGi~y~~~A~~a~~~s 454 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQK------------AISLLGGQRSHLK--------------PRGYLFLGIAYGFQARQANLKS 454 (799)
T ss_pred HHHHhchhhhhhHHHHHHH------------HHHHhhhhhhhhh--------------hhHHHHHHHHHHhHhhcCCChH
Confidence 3344443333332222211 11111 1111111 11222222222211
Q ss_pred ---CCchHHHHHHHHHHHCC-CCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHH
Q 037537 210 ---REGLEALQLFQEMVSLQ-LGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRD 285 (677)
Q Consensus 210 ---g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~ 285 (677)
....++++.+++..+.+ -.|+..-|.++- ++..++++.|.+...+..+.+-..+...|.-|.-.+...++ +.+
T Consensus 455 eR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr-~~~ 531 (799)
T KOG4162|consen 455 ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR-LKE 531 (799)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh-hHH
Confidence 12345666666665543 234444343333 34556677777777777776555666666666555555555 777
Q ss_pred HHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHh
Q 037537 286 CMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKI 362 (677)
Q Consensus 286 A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~ 362 (677)
|+.+.+...+ .|.+....-|.--..- ++.++++.+...+..- --+...+... ++ +.-..-.+.
T Consensus 532 Al~vvd~al~E~~~N~~l~~~~~~i~~~~-~~~e~~l~t~~~~L~~--we~~~~~q~~--------~~---~g~~~~lk~ 597 (799)
T KOG4162|consen 532 ALDVVDAALEEFGDNHVLMDGKIHIELTF-NDREEALDTCIHKLAL--WEAEYGVQQT--------LD---EGKLLRLKA 597 (799)
T ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhc-ccHHHHHHHHHHHHHH--HHhhhhHhhh--------hh---hhhhhhhhc
Confidence 7776665432 1111111111111113 5566666665555421 0000000000 00 000000000
Q ss_pred hc------ccCccchhHHH---HHHHHccCCHHHHHHHHhcCCCCCc------chHHHHHHHHHHcCChHHHHHHHHHHH
Q 037537 363 EI------RSNRISVNNAL---VAMYSKCGNLEDARRLFDRMPEHNT------VSLNSMIAGYAQHGIGMEALRLFEWML 427 (677)
Q Consensus 363 ~~------~~~~~~~~~~l---i~~y~k~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~ 427 (677)
|+ ..+.+..+..+ +..-.+.-..+.....+...+.|+. ..|......+.+.+..++|...+.+..
T Consensus 598 ~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 598 GLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS 677 (799)
T ss_pred ccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 00 00101122211 1111111112222222222233332 246667778888999999998888877
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHH--HHHhCCCCCChH
Q 037537 428 ETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAER--LIEAMPFNPGSI 504 (677)
Q Consensus 428 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~~ 504 (677)
... +-....|......+...|..++|.+.|.... -+.|+ +....++..++.+.|+..-|.. ++..+
T Consensus 678 ~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~da------- 746 (799)
T KOG4162|consen 678 KID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDA------- 746 (799)
T ss_pred hcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH-------
Confidence 632 3334455555566678899999999998876 46775 6788899999999997666666 66655
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 505 ALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 505 ~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
++++|.++..|.-|+..+-+.|+.++|.+.|+...+..
T Consensus 747 --------lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 747 --------LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred --------HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 68999999999999999999999999999999876543
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.1e-05 Score=82.00 Aligned_cols=443 Identities=13% Similarity=0.117 Sum_probs=250.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHH--HHHHHH--hcCCh
Q 037537 6 LKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNV--LLAAYA--RQLRI 81 (677)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--li~~~~--~~g~~ 81 (677)
++-....+++++|.+....++..+ +.+...+.+-+-+..+.+.+++|..+...-... .+++. +=.+|+ +.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 445667789999999999999888 778888888888889999999999665543321 12222 234454 67999
Q ss_pred hHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCC-CcccHHHHHHHhhcchhhHHHHHHHHHHhCC
Q 037537 82 ASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDT-DGFTLSGLITASSNNLCLIKQLHCLAIYCGF 160 (677)
Q Consensus 82 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~ 160 (677)
++|...++.....|..+-..=.+.+.+.|++++|+++|+.+.+.+..- |..--..++.+.... ..+ .+.....
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l---~~~---~~q~v~~ 169 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL---QVQ---LLQSVPE 169 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh---hHH---HHHhccC
Confidence 999999996555555566666778889999999999999998765321 111112222211111 011 1222222
Q ss_pred CCC---hhHHHHHHHHHHhcCChhHHHHHHhhc---C----CCCCee----------eHHHHHHHHHhCCCchHHHHHHH
Q 037537 161 DHY---ASVNNSLLTCYSRNGFLDEAKRVFYEM---G----EIKDEV----------SWNSMVVAYGQHREGLEALQLFQ 220 (677)
Q Consensus 161 ~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m---~----~~~~~~----------~~~~li~~~~~~g~~~~A~~~~~ 220 (677)
.|+ ..+||.- -.+...|++.+|+++++.. + ..-|.. .--.|.-.+-..|+.++|..+|.
T Consensus 170 v~e~syel~yN~A-c~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 170 VPEDSYELLYNTA-CILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCcchHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 221 2234432 3466778999999888765 0 000110 11223445567899999999998
Q ss_pred HHHHCCCCCCHh---HHHHHHHHHccCCChHHH--HHHHHHH-----------HHhCCCCchhhHHHHHHHHHHcCCCHH
Q 037537 221 EMVSLQLGLDMY---TLASILTAFTSLEDLVGG--LQFHAHL-----------IKSGFHQNSHIGSGLIDLYAKCSGDMR 284 (677)
Q Consensus 221 ~m~~~g~~pd~~---t~~~ll~a~~~~~~~~~a--~~~~~~~-----------~~~g~~~~~~~~~~li~~y~~~g~~~~ 284 (677)
..+.... +|.. ++..-|-+.....++-.+ .+.++.. ....-......-+.++.+|.. . .+
T Consensus 249 ~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn--k-~~ 324 (652)
T KOG2376|consen 249 DIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN--K-MD 324 (652)
T ss_pred HHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h-HH
Confidence 8887653 3432 222222333333322221 1111100 000001122223444555543 2 55
Q ss_pred HHHHHHhhCCCCC-hhhHHHHHhhhcccC-CCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHh
Q 037537 285 DCMKVFEEIPQPD-LVLWNTMISGYSQKE-EYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKI 362 (677)
Q Consensus 285 ~A~~~f~~~~~~~-~~~~~~li~~~~~~~-~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~ 362 (677)
.++++-...+... ...+.+++....+.+ ....++.+++...-+. .|+..
T Consensus 325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s--------------------------- 375 (652)
T KOG2376|consen 325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKS--------------------------- 375 (652)
T ss_pred HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchh---------------------------
Confidence 5555555555321 222333333322220 1233444444433322 22211
Q ss_pred hcccCccchhHHHHHHHHccCCHHHHHHHHh--------cCCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC--C
Q 037537 363 EIRSNRISVNNALVAMYSKCGNLEDARRLFD--------RMPE--HNTVSLNSMIAGYAQHGIGMEALRLFEWMLET--N 430 (677)
Q Consensus 363 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~--------~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g 430 (677)
..+.-.++......|+++.|.+++. .+.+ .-+-+-.++...|.+.++.+.|..++++.+.. .
T Consensus 376 ------~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 376 ------KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 2344455566667788888888777 4433 23444555666677777777777777766541 1
Q ss_pred CCCCHHHHHHHHH----HHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 037537 431 IPPTNITFVSVLS----ACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFN 500 (677)
Q Consensus 431 ~~p~~~t~~~ll~----a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (677)
-.+......+++. --.+.|.-++|..+++++.+. ..+|..+...+|.+|++. +.+.|..+-+.++..
T Consensus 450 ~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~ 520 (652)
T KOG2376|consen 450 QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKLPPL 520 (652)
T ss_pred hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCc
Confidence 1222333333333 234668999999999999873 457888899999998876 478888888877533
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=98.90 E-value=1.9e-07 Score=101.57 Aligned_cols=244 Identities=12% Similarity=-0.015 Sum_probs=156.7
Q ss_pred ChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHH---------cCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCC
Q 037537 246 DLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAK---------CSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEE 313 (677)
Q Consensus 246 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~---------~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~ 313 (677)
+++.|...+++.++.. +.+...+..+...|.. .++ .++|...+++..+ .+...|..+...+... |
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~-~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~-g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNA-MIKAKEHAIKATELDHNNPQALGLLGLINTIH-S 352 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-c
Confidence 4566777777666553 2223344444433321 123 5677777776543 3445666666666666 7
Q ss_pred CHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHh
Q 037537 314 YSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFD 393 (677)
Q Consensus 314 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 393 (677)
++++|...|++..+. .|+. ...+..+...|...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l--~P~~----------------------------------~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 353 EYIVGSLLFKQANLL--SPIS----------------------------------ADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred CHHHHHHHHHHHHHh--CCCC----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 788888888777763 3443 5566777888888999999999999
Q ss_pred cCCC--CCc-chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc
Q 037537 394 RMPE--HNT-VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP 469 (677)
Q Consensus 394 ~~~~--~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 469 (677)
+..+ |+. ..+..++..+...|++++|+..+++..+.. +|+ ...+..+..++...|+.++|...+..+... .|
T Consensus 397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~ 472 (553)
T PRK12370 397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EI 472 (553)
T ss_pred HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cc
Confidence 8765 332 233344555777889999999999988754 454 444666667778899999999999887643 44
Q ss_pred C-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 470 E-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 470 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+ ....+.+...|.+.| ++|...++++... .+..|.++. .+...|+-.|+-+.+..+ +++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~------------~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLES------------EQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHH------------hhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhc
Confidence 4 334455666677777 4777777765311 112232222 266777888888887766 77776
Q ss_pred CC
Q 037537 549 RG 550 (677)
Q Consensus 549 ~g 550 (677)
.|
T Consensus 535 ~~ 536 (553)
T PRK12370 535 ED 536 (553)
T ss_pred cc
Confidence 55
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=98.88 E-value=1.5e-07 Score=102.34 Aligned_cols=209 Identities=13% Similarity=0.081 Sum_probs=152.9
Q ss_pred HHHHHHHHhhCCC--CC-hhhHHHHHhhhc---------ccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChh
Q 037537 283 MRDCMKVFEEIPQ--PD-LVLWNTMISGYS---------QKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPS 350 (677)
Q Consensus 283 ~~~A~~~f~~~~~--~~-~~~~~~li~~~~---------~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 350 (677)
.++|...|++..+ |+ ...|..+...|. .. ++.++|...+++..+. .|+.
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~-~~~~~A~~~~~~Al~l--dP~~---------------- 337 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQ-NAMIKAKEHAIKATEL--DHNN---------------- 337 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccc-hHHHHHHHHHHHHHhc--CCCC----------------
Confidence 6788888888764 33 334444433322 22 4567888888877763 4443
Q ss_pred HHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 037537 351 LGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWML 427 (677)
Q Consensus 351 ~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 427 (677)
..++..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..
T Consensus 338 ------------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al 399 (553)
T PRK12370 338 ------------------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL 399 (553)
T ss_pred ------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56667788888899999999999998765 3 34578889999999999999999999999
Q ss_pred HCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHH
Q 037537 428 ETNIPPTN-ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIA 505 (677)
Q Consensus 428 ~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 505 (677)
+. .|+. ..+..++..+...|++++|...++++.+. ..| +...+..+..+|...|+.++|.+.++++.
T Consensus 400 ~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~------- 468 (553)
T PRK12370 400 KL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEIS------- 468 (553)
T ss_pred hc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh-------
Confidence 85 4553 33344455566789999999999998764 235 35557778888999999999999998863
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 506 LKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 506 ~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
...|.+...+..|...|...| ++|...++.+.+.
T Consensus 469 --------~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 469 --------TQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred --------hccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 233555666777778888877 5888877776553
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.87 E-value=2.8e-07 Score=95.66 Aligned_cols=203 Identities=17% Similarity=0.240 Sum_probs=149.7
Q ss_pred HHhhhcccCCCHHHHHHHHHHHhhc---CCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHH
Q 037537 304 MISGYSQKEEYSDQALGCFKKLNRV---GYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYS 380 (677)
Q Consensus 304 li~~~~~~~~~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~ 380 (677)
+-..|... +++++|..+|+++... ..-++.... ..+++.|...|.
T Consensus 247 ~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h~~v-------------------------------a~~l~nLa~ly~ 294 (508)
T KOG1840|consen 247 LALVYRSL-GKYDEAVNLYEEALTIREEVFGEDHPAV-------------------------------AATLNNLAVLYY 294 (508)
T ss_pred HHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCCHHH-------------------------------HHHHHHHHHHHh
Confidence 44456666 8889999999888642 233444333 566788888999
Q ss_pred ccCCHHHHHHHHhcCCC----------CCcc-hHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHH
Q 037537 381 KCGNLEDARRLFDRMPE----------HNTV-SLNSMIAGYAQHGIGMEALRLFEWMLET---NIPPT----NITFVSVL 442 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~ll 442 (677)
+.|++++|...+++..+ +.+. -.+.+...+...+++++|..+++...+. -..++ ..+++.+.
T Consensus 295 ~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~ 374 (508)
T KOG1840|consen 295 KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLA 374 (508)
T ss_pred ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 99999999888776542 2222 3667778889999999999999877652 12233 35789999
Q ss_pred HHHhccCCHHHHHHHHHHhHHhc-----CCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc-c
Q 037537 443 SACAHTGKVAEGQKYFSMMKDMF-----GFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ-L 515 (677)
Q Consensus 443 ~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~-l 515 (677)
..+.+.|++++|.++|+++.+.. +..+. ..+++.|...|.+.+..++|.++|.+.. .+. +.+. -
T Consensus 375 ~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~--------~i~-~~~g~~ 445 (508)
T KOG1840|consen 375 ELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK--------DIM-KLCGPD 445 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH--------HHH-HHhCCC
Confidence 99999999999999999988652 11222 4567888899999999999999998762 111 2222 2
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 516 EPSNAVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 516 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
.|+-..+|..|+.+|.+.|++++|.++.....
T Consensus 446 ~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 446 HPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34556789999999999999999999988765
No 72
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=0.00011 Score=79.10 Aligned_cols=134 Identities=19% Similarity=0.245 Sum_probs=100.9
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID 479 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 479 (677)
+..|..+..+-.+.|...+|++-|-+ ..|+..|.-++..+++.|.+++-.+++...+++ .-+|.++ +.||-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 45699999999999999999887754 246778999999999999999999999998887 6666554 67899
Q ss_pred HHhhcCChHHHHHHHHhCCCCCChHH-HHHHHHHhc--------cCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 037537 480 LLGRAGKLTDAERLIEAMPFNPGSIA-LKAANHFLQ--------LEPSNAVPYVMLANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~--------l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 546 (677)
+|++.+++.|-++++..- +..- ..+..+.++ +--.+.+.|..|...+...|.+..|...-++.
T Consensus 1175 AyAkt~rl~elE~fi~gp----N~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAGP----NVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHhchHHHHHHHhcCC----CchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999887532 2211 222222221 11135677889999999999999887665543
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.83 E-value=1.1e-07 Score=98.51 Aligned_cols=228 Identities=17% Similarity=0.215 Sum_probs=160.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHc-----C-CCCChh-hHHHHHHHHHccCChHHHHHHHhhccc--------cCh--
Q 037537 3 RQVLKTCVGRRDLVTGKSLHALYLKN-----L-VPFSAY-LSNHFILLYSKCGCLSAAHHAFNQTQH--------ANV-- 65 (677)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~-- 65 (677)
.-|...|...|+++.|..++.+.++. | ..|... ..+.+..+|...+++.+|..+|+.+.. .++
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 34667888899999999988888876 1 122222 233466778888889999888888776 222
Q ss_pred -hHHHHHHHHHHhcCChhHHHHHhccCCC----------CCcc-hHHHHHHHHHhCCChhHHHHHHHHhHhc---CCCCC
Q 037537 66 -FSFNVLLAAYARQLRIASARQLFDQIPQ----------PDLV-SYNTLISAYADCGDTESALSLFKDMREK---RFDTD 130 (677)
Q Consensus 66 -~~~~~li~~~~~~g~~~~A~~~f~~m~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~ 130 (677)
.+++.|-.+|.+.|++++|...++...+ |.+. ..+.+...+...+++++|..+++...+. -..++
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 3456666678888888888777766432 2332 2566777788888888888888765532 01111
Q ss_pred cccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-------CC--CC-CeeeHH
Q 037537 131 GFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-------GE--IK-DEVSWN 200 (677)
Q Consensus 131 ~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-------~~--~~-~~~~~~ 200 (677)
.. .-..+++.|-..|.+.|++++|+++|++. .. .+ .....|
T Consensus 363 ~~-----------------------------~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 363 NV-----------------------------NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred ch-----------------------------HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 10 11346788999999999999999999987 11 11 234578
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHC----CC-CCC-HhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 037537 201 SMVVAYGQHREGLEALQLFQEMVSL----QL-GLD-MYTLASILTAFTSLEDLVGGLQFHAHLIK 259 (677)
Q Consensus 201 ~li~~~~~~g~~~~A~~~~~~m~~~----g~-~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 259 (677)
.|...|.+.+++.+|.++|.+-... |. .|+ ..+|..|...|...|+++.|.++...+..
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 8889999999999999999776432 21 123 46788888889999999999988887764
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=1.4e-07 Score=88.36 Aligned_cols=228 Identities=14% Similarity=0.126 Sum_probs=185.1
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhhCC--CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhh
Q 037537 268 IGSGLIDLYAKCSGDMRDCMKVFEEIP--QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACS 345 (677)
Q Consensus 268 ~~~~li~~y~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 345 (677)
--+-+...|.+.|. ..+|++-|+.-. .|-+.||-.|-..|.+. ++++.|+.+|.+-.+ ..|-.+||.
T Consensus 225 Wk~Q~gkCylrLgm-~r~AekqlqssL~q~~~~dTfllLskvY~ri-dQP~~AL~~~~~gld--~fP~~VT~l------- 293 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGM-PRRAEKQLQSSLTQFPHPDTFLLLSKVYQRI-DQPERALLVIGEGLD--SFPFDVTYL------- 293 (478)
T ss_pred HHHHHHHHHHHhcC-hhhhHHHHHHHhhcCCchhHHHHHHHHHHHh-ccHHHHHHHHhhhhh--cCCchhhhh-------
Confidence 34567788888888 999999888765 37777888888999999 999999999988776 467777763
Q ss_pred ccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHH
Q 037537 346 NLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRL 422 (677)
Q Consensus 346 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 422 (677)
.-....+-..++.++|.++++...+ .|+.+...+..+|.-.++++-|+..
T Consensus 294 ---------------------------~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 294 ---------------------------LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred ---------------------------hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence 2334445566888999999998765 3556666777889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC--hHHHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 037537 423 FEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE--GEHYSCMIDLLGRAGKLTDAERLIEAMPFN 500 (677)
Q Consensus 423 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (677)
|+++++.|+ -++.-|+.+.-.|...+.+|-++.-|+..... .-.|+ ..+|-.+.....-.|++.-|.+-|+-.
T Consensus 347 YRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla--- 421 (478)
T KOG1129|consen 347 YRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA--- 421 (478)
T ss_pred HHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHH---
Confidence 999999994 46678888888999999999999999988865 44454 467777888888889999999888765
Q ss_pred CChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 501 PGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 501 ~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
+.-+|++..+++.|.-.-.+.|+.++|..+++..+...
T Consensus 422 ------------L~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 422 ------------LTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred ------------hccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 35567888999999999999999999999999877643
No 75
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=3.9e-05 Score=82.49 Aligned_cols=432 Identities=12% Similarity=0.101 Sum_probs=266.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChh
Q 037537 3 RQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIA 82 (677)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (677)
..|..-+.++++++.....++..++.| ..++.++|+|.+.|....+-.+ ...+.|++--+..+.-||..+++.
T Consensus 842 deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE------~fLkeN~yYDs~vVGkYCEKRDP~ 914 (1666)
T KOG0985|consen 842 DELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPE------RFLKENPYYDSKVVGKYCEKRDPH 914 (1666)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChH------HhcccCCcchhhHHhhhhcccCCc
Confidence 346667777788888888888888888 5688888988888877665432 222344444456667777777776
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHhCCChhH-HHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCC
Q 037537 83 SARQLFDQIPQPDLVSYNTLISAYADCGDTES-ALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFD 161 (677)
Q Consensus 83 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~ 161 (677)
.|.-.+++-.- | ..||..+-.+..+.. |.-+.+ ..|...|..+|.- ....-+++.+.++..+++
T Consensus 915 lA~vaYerGqc-D----~elI~vcNeNSlfK~~aRYlv~-------R~D~~LW~~VL~e---~n~~rRqLiDqVv~tal~ 979 (1666)
T KOG0985|consen 915 LACVAYERGQC-D----LELINVCNENSLFKSQARYLVE-------RSDPDLWAKVLNE---ENPYRRQLIDQVVQTALP 979 (1666)
T ss_pred eEEEeecccCC-c----HHHHHhcCchhHHHHHHHHHHh-------ccChHHHHHHHhc---cChHHHHHHHHHHHhcCC
Confidence 66555544322 1 112222222221111 111111 1233334433321 111456777777777763
Q ss_pred --CChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeee-----HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHH
Q 037537 162 --HYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVS-----WNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTL 234 (677)
Q Consensus 162 --~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 234 (677)
.|+.-.+..+.++...+-..+-.++++++-..+++++ -|.||-...+ -+....++..+++-.-.. |+
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~---- 1053 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD---- 1053 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh----
Confidence 4666677788888889999999999998833444443 3344433333 345566666666543221 22
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCC
Q 037537 235 ASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEY 314 (677)
Q Consensus 235 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~ 314 (677)
+...+...+-+++|..+|... ..+....+.|+.--. . ++.|.+.-++..+|. .|+.+..+-.+. |.
T Consensus 1054 --ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie~i~---~-ldRA~efAe~~n~p~--vWsqlakAQL~~-~~ 1119 (1666)
T KOG0985|consen 1054 --IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIENIG---S-LDRAYEFAERCNEPA--VWSQLAKAQLQG-GL 1119 (1666)
T ss_pred --HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHHHhh---h-HHHHHHHHHhhCChH--HHHHHHHHHHhc-Cc
Confidence 223344455567777776543 444555555554433 3 777777777766554 588888888888 88
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHh
Q 037537 315 SDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFD 393 (677)
Q Consensus 315 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 393 (677)
..+|++-|-+. -|...|..++..+++.+ .+.-...+....+..-+|. +-+.||-+|+|.+++.+-++++.
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~---id~eLi~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY---IDSELIFAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc---chHHHHHHHHHhchHHHHHHHhc
Confidence 88888777442 35567888888888888 7766666666665554444 55788888888888887776654
Q ss_pred cCCC-----------------------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 037537 394 RMPE-----------------------HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGK 450 (677)
Q Consensus 394 ~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 450 (677)
.-.. .++.-|..|...+...|++..|...-++. .+..||-.+-.+|...+.
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhh
Confidence 2211 23445667777777777777776654432 345688888888887776
Q ss_pred HHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 451 VAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 451 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+.-|. |... ++....+-..-++..|-..|.++|-..+++..
T Consensus 1265 FrlAQ-----iCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1265 FRLAQ-----ICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hhHHH-----hcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 64432 2211 23334555677888899999999988888754
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.1e-05 Score=75.41 Aligned_cols=357 Identities=14% Similarity=0.063 Sum_probs=188.5
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchH-HHHHHHHHhCC-C-hhH-------------HHHHHHHhHhcC-
Q 037537 64 NVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSY-NTLISAYADCG-D-TES-------------ALSLFKDMREKR- 126 (677)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-~~li~~~~~~g-~-~~~-------------A~~~~~~m~~~g- 126 (677)
+...-...+..|...++-+.|.....+.+..-...- |.|+.-+.+.| + .++ |++.+.-..+.+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 444556678888889999999999988876433333 33433333332 1 121 222222222222
Q ss_pred --------------CCCCcccHHHHHHHhhcchh----hHHHHHHH-HHHhCCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 037537 127 --------------FDTDGFTLSGLITASSNNLC----LIKQLHCL-AIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVF 187 (677)
Q Consensus 127 --------------~~p~~~t~~~ll~a~~~~~~----~~~~i~~~-~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 187 (677)
+.|+..+.+.-+.+++..-. .+-+.+.. -...-++.|+....++.+.|...|+.++|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 22333333333444332211 22222222 233446777888888888888888888888888
Q ss_pred hhc-CCCCCeee-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCc
Q 037537 188 YEM-GEIKDEVS-WNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQN 265 (677)
Q Consensus 188 ~~m-~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 265 (677)
++. ...|+.++ .....-.+.+.|++++...+...+.... +-....|..-.+.....++++.|..+-+..++.. +.+
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~ 333 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRN 333 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-ccc
Confidence 887 23332221 2222233456777777777766665421 1122223333333445567777777766666543 223
Q ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHhhCC--C-CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHH-
Q 037537 266 SHIGSGLIDLYAKCSGDMRDCMKVFEEIP--Q-PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVI- 341 (677)
Q Consensus 266 ~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll- 341 (677)
+..+-.-...+...++ .++|.-.|+... . -+..+|.-|+..|... |...+|+-+-+...+. +..+..+.+ ++
T Consensus 334 ~~alilKG~lL~~~~R-~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~-~~~kEA~~~An~~~~~-~~~sA~~Lt-L~g 409 (564)
T KOG1174|consen 334 HEALILKGRLLIALER-HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ-KRFKEANALANWTIRL-FQNSARSLT-LFG 409 (564)
T ss_pred chHHHhccHHHHhccc-hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh-chHHHHHHHHHHHHHH-hhcchhhhh-hhc
Confidence 3333333345555566 888888887654 2 4677888888888888 8888887766554432 122222222 22
Q ss_pred -HHhhccC--hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCh
Q 037537 342 -SACSNLS--PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--HNTVSLNSMIAGYAQHGIG 416 (677)
Q Consensus 342 -~a~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~ 416 (677)
..|.... -+.++.+.+..++ +.|+.+...+.+...+...|..+++..++++... +|.+..+.|...+...+.+
T Consensus 410 ~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 410 TLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred ceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhH
Confidence 1222221 3444444433332 2233334444555555555555555555554432 4555555555555555555
Q ss_pred HHHHHHHHHHHH
Q 037537 417 MEALRLFEWMLE 428 (677)
Q Consensus 417 ~~A~~l~~~m~~ 428 (677)
.+|++.|...+.
T Consensus 488 Q~am~~y~~ALr 499 (564)
T KOG1174|consen 488 QKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHHHHh
Confidence 555555555544
No 77
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.80 E-value=1.8e-05 Score=82.03 Aligned_cols=421 Identities=14% Similarity=0.161 Sum_probs=237.7
Q ss_pred HHHHHHHccCChHHHHHHHhhccccChh--HHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHH
Q 037537 39 HFILLYSKCGCLSAAHHAFNQTQHANVF--SFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESAL 116 (677)
Q Consensus 39 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 116 (677)
..+.+......+.+|..+.+.+...++. -|..+.+.|+..|+++.|.++|-+. ..++--|..|.++|+|++|.
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHH
Confidence 3445555667777777777777663333 2556666777777777777777553 23555677777777777777
Q ss_pred HHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCe
Q 037537 117 SLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDE 196 (677)
Q Consensus 117 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~ 196 (677)
++-.+... |... ...|-+-..-.-+.|++.+|++++-.+ ..|+.
T Consensus 812 kla~e~~~----~e~t-------------------------------~~~yiakaedldehgkf~eaeqlyiti-~~p~~ 855 (1636)
T KOG3616|consen 812 KLAEECHG----PEAT-------------------------------ISLYIAKAEDLDEHGKFAEAEQLYITI-GEPDK 855 (1636)
T ss_pred HHHHHhcC----chhH-------------------------------HHHHHHhHHhHHhhcchhhhhheeEEc-cCchH
Confidence 77655431 2111 111122223344567777777777666 45543
Q ss_pred eeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 037537 197 VSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLY 276 (677)
Q Consensus 197 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 276 (677)
-|..|-+.|..++.+++..+-....+ ..|-..+..-+-..|++..|+.-|-..- -|.+-++||
T Consensus 856 -----aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmy 918 (1636)
T KOG3616|consen 856 -----AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMY 918 (1636)
T ss_pred -----HHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHh
Confidence 45666777777777766655432111 2333444455556677777665543322 356677888
Q ss_pred HHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHH--hhcCCCCCcchHHHHHHHhhccC-hhHHH
Q 037537 277 AKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKL--NRVGYHPDDCSFVCVISACSNLS-PSLGK 353 (677)
Q Consensus 277 ~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m--~~~g~~p~~~t~~~ll~a~~~~~-~~~~~ 353 (677)
-..+. +++|.++-+.-.-.|..-.-..+-+-.-. | +.|.+++++. ...+ +.-.+..+ .+.+.
T Consensus 919 k~s~l-w~dayriaktegg~n~~k~v~flwaksig-g--daavkllnk~gll~~~-----------id~a~d~~afd~af 983 (1636)
T KOG3616|consen 919 KASEL-WEDAYRIAKTEGGANAEKHVAFLWAKSIG-G--DAAVKLLNKHGLLEAA-----------IDFAADNCAFDFAF 983 (1636)
T ss_pred hhhhh-HHHHHHHHhccccccHHHHHHHHHHHhhC-c--HHHHHHHHhhhhHHHH-----------hhhhhcccchhhHH
Confidence 88777 88888876654433332222222222211 2 5566666542 2211 11122223 55555
Q ss_pred HHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCc--chHHHHH-----HHHHHcC-ChHHHHHHHHH
Q 037537 354 QIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNT--VSLNSMI-----AGYAQHG-IGMEALRLFEW 425 (677)
Q Consensus 354 ~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~--~~~~~li-----~~~~~~g-~~~~A~~l~~~ 425 (677)
.+.....+... ..+.-.+.-.+-..|++++|-+-+-+..+-|. +||..-+ .-+.+.| ++++|.++|-.
T Consensus 984 dlari~~k~k~----~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~ 1059 (1636)
T KOG3616|consen 984 DLARIAAKDKM----GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIH 1059 (1636)
T ss_pred HHHHHhhhccC----ccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhh
Confidence 55444444333 33444555566788999999988887766443 4554332 2345556 67777777632
Q ss_pred H--------HHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHH
Q 037537 426 M--------LETNIPPTN--ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIE 495 (677)
Q Consensus 426 m--------~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 495 (677)
= +....-||. ..|+.-.......|++-+|..++-+. -+|+.. ++-|..++.|.+|+++-+
T Consensus 1060 dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllra-----nkp~i~-----l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1060 DNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRA-----NKPDIA-----LNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred cccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeec-----CCCchH-----HHHHHHhccChHHHHHHH
Confidence 1 011122332 23334444445566766666655333 356653 456777889999999887
Q ss_pred hC-CCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 037537 496 AM-PFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 496 ~m-~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 546 (677)
.. |.+...+.++--+..++....-...++.-..-.-++|+|..|...+-+.
T Consensus 1130 dylp~q~a~iqeeyek~~~k~gargvd~fvaqak~weq~gd~rkav~~~lki 1181 (1636)
T KOG3616|consen 1130 DYLPHQAAAIQEEYEKEALKKGARGVDGFVAQAKEWEQAGDWRKAVDALLKI 1181 (1636)
T ss_pred hhChhHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhcccHHHHHHHHhhh
Confidence 65 2222222244444455555556667888788888899999888877665
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=7.4e-05 Score=72.86 Aligned_cols=358 Identities=13% Similarity=0.031 Sum_probs=218.4
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHhhcCCCC-CeeeHHHHHHHHHhCC-CchH--------------HHHHHHHHHHCC-
Q 037537 164 ASVNNSLLTCYSRNGFLDEAKRVFYEMGEIK-DEVSWNSMVVAYGQHR-EGLE--------------ALQLFQEMVSLQ- 226 (677)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~~li~~~~~~g-~~~~--------------A~~~~~~m~~~g- 226 (677)
...-.-.+..|...++-+.|.....+. +.. ...--|.|+.-+-+.| +..+ |++.+.-..+.+
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~-p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQV-PPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcC-CccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 334445666777778888888887777 332 2223344443333332 1111 112222222222
Q ss_pred --------------CCCCHhHHHHHHHHH--ccCCChHHHHHHHHHHHH-hCCCCchhhHHHHHHHHHHcCCCHHHHHHH
Q 037537 227 --------------LGLDMYTLASILTAF--TSLEDLVGGLQFHAHLIK-SGFHQNSHIGSGLIDLYAKCSGDMRDCMKV 289 (677)
Q Consensus 227 --------------~~pd~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~~A~~~ 289 (677)
+.|+..+...-+.++ +..++-..+.+.+-.+.+ .-++.|+....++.+.|...|+ .++|...
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gd-n~~a~~~ 254 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGD-YFQAEDI 254 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcC-chHHHHH
Confidence 223333333334433 233444444444444433 3467888899999999999999 9999999
Q ss_pred HhhCCCCChhhHHHH---HhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC---hhHHHHHHHHHHHhh
Q 037537 290 FEEIPQPDLVLWNTM---ISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS---PSLGKQIHALTIKIE 363 (677)
Q Consensus 290 f~~~~~~~~~~~~~l---i~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~---~~~~~~i~~~~~~~~ 363 (677)
|++...-|..+..+| .--+.+. |+.+....+...+....-..-.. .+..+|.... .+.+..+-+..++
T Consensus 255 Fe~~~~~dpy~i~~MD~Ya~LL~~e-g~~e~~~~L~~~Lf~~~~~ta~~---wfV~~~~l~~~K~~~rAL~~~eK~I~-- 328 (564)
T KOG1174|consen 255 FSSTLCANPDNVEAMDLYAVLLGQE-GGCEQDSALMDYLFAKVKYTASH---WFVHAQLLYDEKKFERALNFVEKCID-- 328 (564)
T ss_pred HHHHhhCChhhhhhHHHHHHHHHhc-cCHhhHHHHHHHHHhhhhcchhh---hhhhhhhhhhhhhHHHHHHHHHHHhc--
Confidence 998765443332222 1122344 77777766666665432111111 1222222222 3333333333332
Q ss_pred cccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 037537 364 IRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVS 440 (677)
Q Consensus 364 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 440 (677)
.++..+..+-.-...+...|+.++|.-.|+.... -+..+|..|+.+|...|++.+|.-+-++..+. ++.+..++..
T Consensus 329 ~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL 407 (564)
T KOG1174|consen 329 SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTL 407 (564)
T ss_pred cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhh
Confidence 2333344444444667778999999999987653 47889999999999999999999988876653 3455566655
Q ss_pred HH-HHHh-ccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCC
Q 037537 441 VL-SACA-HTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEP 517 (677)
Q Consensus 441 ll-~a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p 517 (677)
+- ..|. ....-++|..++++.. .+.|+ ....+.+..++.+.|..+++..++++.. ...|
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L---------------~~~~ 469 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL---------------IIFP 469 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH---------------hhcc
Confidence 52 3343 2334578999988876 45776 5567788889999999999999998763 2222
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 518 SNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 518 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
|...++.|.+.+...+.+.+|++.|......
T Consensus 470 -D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 470 -DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred -ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5577999999999999999999999886553
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.74 E-value=0.00029 Score=74.44 Aligned_cols=276 Identities=14% Similarity=0.132 Sum_probs=175.6
Q ss_pred HHHHHccCChHHHHHHHhhccc--cC-hhHHHHHHHHHHhcCChhHHHHHhccCCC--CCcchHH-HHHHHHHh-----C
Q 037537 41 ILLYSKCGCLSAAHHAFNQTQH--AN-VFSFNVLLAAYARQLRIASARQLFDQIPQ--PDLVSYN-TLISAYAD-----C 109 (677)
Q Consensus 41 l~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~-~li~~~~~-----~ 109 (677)
...+...|++++|.+.+..... .| ..........|.+.|+.++|..++..+.+ |+-..|- .+..+... .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 3445566777777777765444 33 33455566667777777777777777665 4433333 33333311 1
Q ss_pred CChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh----hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHH
Q 037537 110 GDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC----LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKR 185 (677)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~----~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 185 (677)
.+.+...++|+++.+.- |.......+.-.+.. |+ .+.......++.|++ .+++.|-..|......+-..+
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLE-GDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCC-HHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 24566667777665542 433333222111111 22 334444444555543 355666666665555555555
Q ss_pred HHhhc-------C----------CCCCeeeH--HHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCC
Q 037537 186 VFYEM-------G----------EIKDEVSW--NSMVVAYGQHREGLEALQLFQEMVSLQLGLD-MYTLASILTAFTSLE 245 (677)
Q Consensus 186 ~f~~m-------~----------~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~ 245 (677)
++... + ..|+...| .-+...|-..|++++|+++.++.++. .|+ ...|..-.+.+-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 55443 0 12333334 55577788999999999999999885 465 567788888899999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChh----------hH--HHHHhhhcccCC
Q 037537 246 DLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLV----------LW--NTMISGYSQKEE 313 (677)
Q Consensus 246 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~----------~~--~~li~~~~~~~~ 313 (677)
++.+|....+...+.. ..|..+-+-.+..+.++|. +++|.+++.....++.. .| .....+|.+. |
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~-~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~-~ 319 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGR-IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ-G 319 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCC-HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH-h
Confidence 9999999999998876 4677888888889999999 99999998887654421 23 2345678888 9
Q ss_pred CHHHHHHHHHHHhh
Q 037537 314 YSDQALGCFKKLNR 327 (677)
Q Consensus 314 ~~~~A~~l~~~m~~ 327 (677)
++..|++.|....+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 99988887776654
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.74 E-value=4.7e-05 Score=78.50 Aligned_cols=437 Identities=13% Similarity=0.054 Sum_probs=232.5
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHH
Q 037537 9 CVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASAR 85 (677)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 85 (677)
|-..+.+..++.+.+.+++ ..+....+.....-.+...|+.++|........+ .+.+.|..+.-.+-...++++|+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 4456778888888888888 4455566665554455678899999988887777 45567888877777788999999
Q ss_pred HHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCc-ccHHHHHHHhhcchh--hHHHHHHHHHHhC
Q 037537 86 QLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDG-FTLSGLITASSNNLC--LIKQLHCLAIYCG 159 (677)
Q Consensus 86 ~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~--~~~~i~~~~~~~g 159 (677)
+.|..... .|...|.-+--.-++.|+++.....-.+..+. .|.. ..|..+.-+.--.++ .+..+.+...+.-
T Consensus 96 Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 96 KCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99987653 45667776666666777888877777666653 2322 223222222222222 3333333333322
Q ss_pred -CCCChhHHHHHH------HHHHhcCChhHHHHHHhhcCCCCCe---ee-HHHHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 037537 160 -FDHYASVNNSLL------TCYSRNGFLDEAKRVFYEMGEIKDE---VS-WNSMVVAYGQHREGLEALQLFQEMVSLQLG 228 (677)
Q Consensus 160 -~~~~~~~~~~li------~~~~~~g~~~~A~~~f~~m~~~~~~---~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 228 (677)
-.|+...+.... ....+.|.+++|.+-+..- ++.+ +. -..-...+.+.+++++|..++..++...
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~--e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-- 249 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN--EKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-- 249 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh--hhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--
Confidence 123322222111 1122334444444433332 1111 11 1122233344444444444444444421
Q ss_pred CCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHH-HHHhhCCC-------CChhh
Q 037537 229 LDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCM-KVFEEIPQ-------PDLVL 300 (677)
Q Consensus 229 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~-~~f~~~~~-------~~~~~ 300 (677)
||...|...+ ..++++..+ .-++. .+|....+ |-...
T Consensus 250 Pdn~~Yy~~l----------------------------------~~~lgk~~d-~~~~lk~ly~~ls~~y~r~e~p~Rlp 294 (700)
T KOG1156|consen 250 PDNLDYYEGL----------------------------------EKALGKIKD-MLEALKALYAILSEKYPRHECPRRLP 294 (700)
T ss_pred chhHHHHHHH----------------------------------HHHHHHHhh-hHHHHHHHHHHHhhcCcccccchhcc
Confidence 3433333322 223322222 22222 34433321 11111
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHH----HHHHHhh---------ccc
Q 037537 301 WNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIH----ALTIKIE---------IRS 366 (677)
Q Consensus 301 ~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~----~~~~~~~---------~~~ 366 (677)
.+.+. + . .-.+..-.++..+.+.|+.+--.++.++.. ... .+..+++. ..+...| .++
T Consensus 295 lsvl~-~---e-el~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 295 LSVLN-G---E-ELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred HHHhC-c---c-hhHHHHHHHHHHHhhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 11111 1 1 222333445555566665443222222221 111 11011110 0000000 112
Q ss_pred Cccch--hHHHHHHHHccCCHHHHHHHHhcCCCCCcch---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037537 367 NRISV--NNALVAMYSKCGNLEDARRLFDRMPEHNTVS---LNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSV 441 (677)
Q Consensus 367 ~~~~~--~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 441 (677)
..+.+ +--++.-|-+.|+++.|...++......+.. |-.=.+.+...|+.++|..++++..+.. .||...=.--
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKc 445 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKC 445 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHH
Confidence 21223 3456778889999999999999987744433 3344577888999999999999999876 5665443345
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCc--cChHHHHHH------HHHHhhcCChHHHHHHHHhC
Q 037537 442 LSACAHTGKVAEGQKYFSMMKDMFGFE--PEGEHYSCM------IDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~~~~~~--p~~~~~~~l------i~~~~~~g~~~~A~~~~~~m 497 (677)
..-..+++..++|..+.....+. |.. -+..-..|| ..+|.|.|++.+|++=|..+
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~-~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTRE-GFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhc-ccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 55566889999999999888776 541 111111122 35688999999898877655
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.74 E-value=1.1e-05 Score=84.96 Aligned_cols=134 Identities=15% Similarity=0.141 Sum_probs=98.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHH
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLL 481 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~ 481 (677)
.-+...|-..|++++|++..++.++. .|+ ...|..-...+-+.|++++|.+.++..++. .+ |...-+-.+..+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L---D~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL---DLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC---ChhhHHHHHHHHHHH
Confidence 44566788999999999999999995 577 567888888899999999999999999864 33 566666778888
Q ss_pred hhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 482 GRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.|+|++++|.+++......+.... ..+.++. -.....--+.+|.+.|++..|++-|....+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~----~~L~~mQ--c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPL----SNLNDMQ--CMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcc----cCHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999987754321100 0011110 011223557889999999999887766543
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=4e-05 Score=73.08 Aligned_cols=445 Identities=14% Similarity=0.108 Sum_probs=234.0
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCCh
Q 037537 6 LKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNH-FILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRI 81 (677)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 81 (677)
+.-+...+++..|+.+++.-...+-.. ....+. +...+-+.|++++|...+..+.. ++...+-.|.-.+--.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EE-E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREE-EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhh-hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 344566788888888888777554222 222333 34455678999999988887766 5556666666666667888
Q ss_pred hHHHHHhccCCCCCcchHH-HHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh-hHHHHHHHHHHhC
Q 037537 82 ASARQLFDQIPQPDLVSYN-TLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC-LIKQLHCLAIYCG 159 (677)
Q Consensus 82 ~~A~~~f~~m~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~~i~~~~~~~g 159 (677)
.+|..+-...++ ....+ .|...--+.++-++-..+-+.+... .-|..+..++= +.+..- .+-.++..++...
T Consensus 108 ~eA~~~~~ka~k--~pL~~RLlfhlahklndEk~~~~fh~~LqD~--~EdqLSLAsvh--YmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 108 IEAKSIAEKAPK--TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT--LEDQLSLASVH--YMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh--HHHHHhHHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence 888887665543 22222 3333344455555444444443321 01111111110 001111 3333333333321
Q ss_pred CCCChhHHHH-HHHHHHhcCChhHHHHHHhhc-CCCCC-eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHH
Q 037537 160 FDHYASVNNS-LLTCYSRNGFLDEAKRVFYEM-GEIKD-EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLAS 236 (677)
Q Consensus 160 ~~~~~~~~~~-li~~~~~~g~~~~A~~~f~~m-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 236 (677)
|+-...|. +.-.|.+..-++-+.++++-- ...|| .+.-|.......+.=.-.-|.+-..++...+-. .+.+..
T Consensus 182 --~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~--~~~f~~ 257 (557)
T KOG3785|consen 182 --PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ--EYPFIE 257 (557)
T ss_pred --hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc--cchhHH
Confidence 11111122 223566777777777666554 23343 444555554444432333344444444443211 111111
Q ss_pred -HHH-HHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHH-------HHHhh
Q 037537 237 -ILT-AFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWN-------TMISG 307 (677)
Q Consensus 237 -ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~-------~li~~ 307 (677)
+++ -+.--.+-+.|.+++--+.+. .| ...-.|+-.|.+.++ +++|..+..++...+..-|- ++-.-
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~d-VqeA~~L~Kdl~PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQND-VQEAISLCKDLDPTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhh--Ch--Hhhhhheeeeccccc-HHHHHHHHhhcCCCChHHHHHHHHHHHHhhhh
Confidence 111 112224456777776655543 22 233345666778788 99999999888643332221 11111
Q ss_pred hcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC--hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCH
Q 037537 308 YSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS--PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNL 385 (677)
Q Consensus 308 ~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 385 (677)
.... ....-|.+.|.-.-+++..-|.+.=..-+.+|--+. .+...-.. ..++.-+..| ....-.+..+++..|+.
T Consensus 333 ~gSr-eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl-nSi~sYF~Nd-D~Fn~N~AQAk~atgny 409 (557)
T KOG3785|consen 333 TGSR-EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYL-NSIESYFTND-DDFNLNLAQAKLATGNY 409 (557)
T ss_pred cCcH-HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCc-chhhhHHHHHHHHhcCh
Confidence 1111 234456666655545554444322211111211111 22222222 1233334444 23334578899999999
Q ss_pred HHHHHHHhcCCC---CCcchHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHH
Q 037537 386 EDARRLFDRMPE---HNTVSLNSM-IAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSV-LSACAHTGKVAEGQKYFSM 460 (677)
Q Consensus 386 ~~A~~~~~~~~~---~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~ 460 (677)
.+|+++|-++.. +|-.+|-++ .++|.+++.++.|.+++-.+ +-+.+..++..+ .+-|.+.+.+--|-+.|+.
T Consensus 410 ~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~ 486 (557)
T KOG3785|consen 410 VEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDE 486 (557)
T ss_pred HHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 999999988876 456677654 57889999999987766554 323445554444 4568889988888888888
Q ss_pred hHHhcCCccChHHHH
Q 037537 461 MKDMFGFEPEGEHYS 475 (677)
Q Consensus 461 m~~~~~~~p~~~~~~ 475 (677)
+.. ..|+++.|.
T Consensus 487 lE~---lDP~pEnWe 498 (557)
T KOG3785|consen 487 LEI---LDPTPENWE 498 (557)
T ss_pred HHc---cCCCccccC
Confidence 864 578887763
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.71 E-value=1.2e-06 Score=87.12 Aligned_cols=220 Identities=14% Similarity=0.134 Sum_probs=137.4
Q ss_pred CCHHHHHHHHHHHhhcC-CCCCc--chHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHH
Q 037537 313 EYSDQALGCFKKLNRVG-YHPDD--CSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDA 388 (677)
Q Consensus 313 ~~~~~A~~l~~~m~~~g-~~p~~--~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 388 (677)
+..+.++.-+.++.... ..|+. ..|...-..+...| .+.+...+...++. .|+.+.+++.+...|...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 55577777777777532 22322 22333333445556 66666666655553 455577888888888888888888
Q ss_pred HHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037537 389 RRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMF 465 (677)
Q Consensus 389 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 465 (677)
...|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|+.....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 888887754 3 3457777888888888888888888888874 454332222222234567788888888665542
Q ss_pred CCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 037537 466 GFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRL 545 (677)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 545 (677)
..|+...+ .++..+ .|++.++ +.++.+... .+...++.|+...+|..|+.+|.+.|++++|...|++
T Consensus 195 -~~~~~~~~-~~~~~~--lg~~~~~-~~~~~~~~~--------~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 195 -LDKEQWGW-NIVEFY--LGKISEE-TLMERLKAG--------ATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred -CCccccHH-HHHHHH--ccCCCHH-HHHHHHHhc--------CCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33333222 233332 4444333 233222100 0011245566778999999999999999999999999
Q ss_pred HHhCC
Q 037537 546 MRDRG 550 (677)
Q Consensus 546 m~~~g 550 (677)
..+.+
T Consensus 262 Al~~~ 266 (296)
T PRK11189 262 ALANN 266 (296)
T ss_pred HHHhC
Confidence 88755
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.70 E-value=6.2e-07 Score=87.89 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=115.5
Q ss_pred HHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHH
Q 037537 377 AMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH----TGKVA 452 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~ 452 (677)
.+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHH
Confidence 4567789999999888776 44555666788999999999999999999874 344 445555555432 34689
Q ss_pred HHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 037537 453 EGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA 532 (677)
Q Consensus 453 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~ 532 (677)
+|..+|+++.+. ..+++.+.+.+.-+....|++++|.+++++. ++.+|.++.+...++-....
T Consensus 185 ~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a---------------l~~~~~~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 185 DAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEA---------------LEKDPNDPDTLANLIVCSLH 247 (290)
T ss_dssp HHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHH---------------CCC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH---------------HHhccCCHHHHHHHHHHHHH
Confidence 999999999875 4578888999999999999999999998875 36678888899999999999
Q ss_pred cCCh-HHHHHHHHHHHhC
Q 037537 533 SGKW-EEVATIRRLMRDR 549 (677)
Q Consensus 533 ~g~~-~~a~~~~~~m~~~ 549 (677)
.|+. +.+.+++.+++..
T Consensus 248 ~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 248 LGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp TT-TCHHHHHHHHHCHHH
T ss_pred hCCChhHHHHHHHHHHHh
Confidence 9988 6677888888764
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=0.00032 Score=74.18 Aligned_cols=316 Identities=14% Similarity=0.126 Sum_probs=158.0
Q ss_pred HHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChhHHHHHhccCCC-CCcchHHHHHHHHHhCCChhHHHHHHH
Q 037537 42 LLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIASARQLFDQIPQ-PDLVSYNTLISAYADCGDTESALSLFK 120 (677)
Q Consensus 42 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 120 (677)
-.....|.+++|+.++++-.+ |..|-..|-..|.+++|.++-+.-.+ .=..||-.-...+-..++.+.|++.|+
T Consensus 808 vLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 334567888888888887765 33344566677888888877654322 112344445555555667777777666
Q ss_pred H----------hHhcCCCCCcccHHHHHHHhhcchh-hHHHHHHHHHHhCCCC--------ChhHHHHHHHHHHhcCChh
Q 037537 121 D----------MREKRFDTDGFTLSGLITASSNNLC-LIKQLHCLAIYCGFDH--------YASVNNSLLTCYSRNGFLD 181 (677)
Q Consensus 121 ~----------m~~~g~~p~~~t~~~ll~a~~~~~~-~~~~i~~~~~~~g~~~--------~~~~~~~li~~~~~~g~~~ 181 (677)
+ |+... .|...-|. +- ..+ ..-.-|..-+++--+. ...-|-++++..+-.|+.+
T Consensus 883 K~~~hafev~rmL~e~-p~~~e~Yv---~~---~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~ 955 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEY-PKQIEQYV---RR---KRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTD 955 (1416)
T ss_pred hcCChHHHHHHHHHhC-hHHHHHHH---Hh---ccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCch
Confidence 4 22221 11111110 00 000 0001111111110011 1112234555555567777
Q ss_pred HHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhC
Q 037537 182 EAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSG 261 (677)
Q Consensus 182 ~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 261 (677)
+|-++-++- .|......|.+.|-..|++.+|+..|.+.+ +|...|+.|-..+--+. +.....-.|
T Consensus 956 kAa~iA~es---gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~---L~nlal~s~ 1020 (1416)
T KOG3617|consen 956 KAARIAEES---GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDR---LANLALMSG 1020 (1416)
T ss_pred HHHHHHHhc---ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHH---HHHHHhhcC
Confidence 777776665 566677778888888888888888887764 45666665544332221 111111111
Q ss_pred CCCchh-----------hHHHHHHHHHHcCCCHHHHHHHHhhCC--------------CCChhhHHHHHhhhcccCCCHH
Q 037537 262 FHQNSH-----------IGSGLIDLYAKCSGDMRDCMKVFEEIP--------------QPDLVLWNTMISGYSQKEEYSD 316 (677)
Q Consensus 262 ~~~~~~-----------~~~~li~~y~~~g~~~~~A~~~f~~~~--------------~~~~~~~~~li~~~~~~~~~~~ 316 (677)
..|.. -..--+-.|-|.|. +.+|.++-=+-. ..|....+---.-++.+ .+++
T Consensus 1021 -~~d~v~aArYyEe~g~~~~~AVmLYHkAGm-~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~-~qye 1097 (1416)
T KOG3617|consen 1021 -GSDLVSAARYYEELGGYAHKAVMLYHKAGM-IGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN-QQYE 1097 (1416)
T ss_pred -chhHHHHHHHHHHcchhhhHHHHHHHhhcc-hHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH-HHHH
Confidence 00100 01112233444444 554444311111 12334444444555666 6777
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhh-cccC---ccchhHHHHHHHHccCCHHHHHHHH
Q 037537 317 QALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIE-IRSN---RISVNNALVAMYSKCGNLEDARRLF 392 (677)
Q Consensus 317 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~-~~~~---~~~~~~~li~~y~k~g~~~~A~~~~ 392 (677)
+|..++-...+ |...+..|...+.....++-+.+.-.. -.++ ...+...+.+.+.+.|.+..|-+-|
T Consensus 1098 kAV~lL~~ar~---------~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1098 KAVNLLCLARE---------FSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHHHHHHHHH---------HHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 78777765543 455566666655444444444433211 1111 1345566677777778777777766
Q ss_pred hcCC
Q 037537 393 DRMP 396 (677)
Q Consensus 393 ~~~~ 396 (677)
.+.-
T Consensus 1169 TQAG 1172 (1416)
T KOG3617|consen 1169 TQAG 1172 (1416)
T ss_pred hhhh
Confidence 5543
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.68 E-value=0.00014 Score=76.67 Aligned_cols=440 Identities=14% Similarity=0.097 Sum_probs=243.1
Q ss_pred HHhcCCChHHHHHH----HHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCC
Q 037537 8 TCVGRRDLVTGKSL----HALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLR 80 (677)
Q Consensus 8 ~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~ 80 (677)
.++.+.+.+++... +.++....++.++.+|..|.=+...+|++..+.+.|++... .....|+.+-..|+-+|.
T Consensus 293 s~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 293 SLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS 372 (799)
T ss_pred hccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc
Confidence 44455566666533 33333344678899999999999999999999999998887 566789999999999999
Q ss_pred hhHHHHHhccCCC----CCcchHHHHHH-HHH-hCCChhHHHHHHHHhHhc--C----CCCCcccHHHHHHHhh---cch
Q 037537 81 IASARQLFDQIPQ----PDLVSYNTLIS-AYA-DCGDTESALSLFKDMREK--R----FDTDGFTLSGLITASS---NNL 145 (677)
Q Consensus 81 ~~~A~~~f~~m~~----~~~~~~~~li~-~~~-~~g~~~~A~~~~~~m~~~--g----~~p~~~t~~~ll~a~~---~~~ 145 (677)
-..|..+.+.-.. |+..+--.|+. .|. +.+.+++++++-.+.... | +.|-..-+..+-.... ...
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 9999999887543 33333333333 232 357788888877776652 1 2222222211111110 010
Q ss_pred h--------hHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChhHHHHHHhhc---CCCCCeeeHHHHHHHHHhCCCch
Q 037537 146 C--------LIKQLHCLAIYCG-FDHYASVNNSLLTCYSRNGFLDEAKRVFYEM---GEIKDEVSWNSMVVAYGQHREGL 213 (677)
Q Consensus 146 ~--------~~~~i~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~~li~~~~~~g~~~ 213 (677)
. .+.+..+..++.+ -.|++..|-+ --|+..++++.|.+...+. +..-+...|..|.-.+...+++.
T Consensus 453 ~seR~~~h~kslqale~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 0 1222222233322 2333333322 2355556677776666655 23445666777777777777777
Q ss_pred HHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCCChHHHHHHHHHHHHhCC-CCchhhHHHHHHHHHHcCCCHHHHHHHHh
Q 037537 214 EALQLFQEMVSLQLGLD-MYTLASILTAFTSLEDLVGGLQFHAHLIKSGF-HQNSHIGSGLIDLYAKCSGDMRDCMKVFE 291 (677)
Q Consensus 214 ~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~~A~~~f~ 291 (677)
+|+.+.+.....- |+ -.-...-+..-...++.+++.....+++..-- .+.+ -..++ -....+.+.
T Consensus 531 ~Al~vvd~al~E~--~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~----------q~~~~-~g~~~~lk~ 597 (799)
T KOG4162|consen 531 EALDVVDAALEEF--GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGV----------QQTLD-EGKLLRLKA 597 (799)
T ss_pred HHHHHHHHHHHHh--hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH----------hhhhh-hhhhhhhhc
Confidence 7777766554421 11 00001111111123444444444333332100 0000 00011 112222222
Q ss_pred hCC----C-CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhccc
Q 037537 292 EIP----Q-PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRS 366 (677)
Q Consensus 292 ~~~----~-~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~ 366 (677)
.+. + .+...-..-+.+.++.++ +.+..-. .|...-+.|+......++
T Consensus 598 ~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~-~Lp~s~~~~~~~~~~~~~------------------------- 649 (799)
T KOG4162|consen 598 GLHLALSQPTDAISTSRYLSSLVASQL--KSAGSEL-KLPSSTVLPGPDSLWYLL------------------------- 649 (799)
T ss_pred ccccCcccccccchhhHHHHHHHHhhh--hhccccc-ccCcccccCCCCchHHHH-------------------------
Confidence 221 0 111111111111111100 0000000 022222222221110000
Q ss_pred CccchhHHHHHHHHccCCHHHHHHHHhcCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 037537 367 NRISVNNALVAMYSKCGNLEDARRLFDRMPEH---NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVL 442 (677)
Q Consensus 367 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 442 (677)
...|....+.+.+.+..++|.-.+.+..+- ....|......+...|..++|.+.|..... +.|+ ....+++.
T Consensus 650 --~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 650 --QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALA 725 (799)
T ss_pred --HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHH
Confidence 234556678888889999998777766553 334566666778889999999999999988 5677 45788888
Q ss_pred HHHhccCCHHHHHH--HHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 443 SACAHTGKVAEGQK--YFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 443 ~a~~~~g~~~~a~~--~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..+...|+..-+.. ++..+.+ +.| +.+.|-.+...+-+.|+.++|-+.|...
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr---~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALR---LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 88899997666665 8888875 455 5788999999999999999999999865
No 87
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=8e-07 Score=83.46 Aligned_cols=127 Identities=12% Similarity=0.130 Sum_probs=89.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHc
Q 037537 200 NSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKC 279 (677)
Q Consensus 200 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 279 (677)
+.|.++|.+.|.+.+|...|+.-+.. .|-..||..+-++|.+..++..|..++.+-++. ++-|+.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56778888889999998888887764 456677888888888888888888888877665 244444444455555555
Q ss_pred CCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCC
Q 037537 280 SGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYH 331 (677)
Q Consensus 280 g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~ 331 (677)
+. .++|.++++...+ .++.+...+..+|.-. ++++-|+.+++++.+-|+.
T Consensus 304 ~~-~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~-~~PE~AlryYRRiLqmG~~ 356 (478)
T KOG1129|consen 304 EQ-QEDALQLYKLVLKLHPINVEAIACIAVGYFYD-NNPEMALRYYRRILQMGAQ 356 (478)
T ss_pred Hh-HHHHHHHHHHHHhcCCccceeeeeeeeccccC-CChHHHHHHHHHHHHhcCC
Confidence 66 7777777776543 3444555555666666 7777788887777776653
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.66 E-value=1.2e-06 Score=78.76 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=140.3
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPEH---NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACA 446 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~ 446 (677)
+...|.-.|...|+...|.+-+++..+. +..+|..+...|.+.|..+.|.+-|++.+.. .|+ ....|..-.-++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence 3456777899999999999999998763 3458999999999999999999999999984 454 567777777788
Q ss_pred ccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHH
Q 037537 447 HTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVML 526 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l 526 (677)
..|.+++|.+.|+.........--..+|..+.-+-.++|+++.|.+.|++. ++++|+++.+...+
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra---------------L~~dp~~~~~~l~~ 179 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA---------------LELDPQFPPALLEL 179 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH---------------HHhCcCCChHHHHH
Confidence 899999999999999986333333668888888889999999999999876 68899999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC
Q 037537 527 ANIYAASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 527 ~~~y~~~g~~~~a~~~~~~m~~~g~ 551 (677)
.......|++..|...++.....|.
T Consensus 180 a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 180 ARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred HHHHHhcccchHHHHHHHHHHhccc
Confidence 9999999999999999999887764
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.63 E-value=1.1e-05 Score=80.25 Aligned_cols=88 Identities=19% Similarity=0.121 Sum_probs=42.3
Q ss_pred HHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCC
Q 037537 37 SNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLFDQIPQ--P-DLVSYNTLISAYADCG 110 (677)
Q Consensus 37 ~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g 110 (677)
|..+...|.+.|+.++|...|.+..+ .++.+|+.+...|...|++++|...|+...+ | +..+|..+...+...|
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 146 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGG 146 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 44444444455555555555554444 2334455555555555555555555554432 2 2334444444455555
Q ss_pred ChhHHHHHHHHhHh
Q 037537 111 DTESALSLFKDMRE 124 (677)
Q Consensus 111 ~~~~A~~~~~~m~~ 124 (677)
++++|++.|++..+
T Consensus 147 ~~~eA~~~~~~al~ 160 (296)
T PRK11189 147 RYELAQDDLLAFYQ 160 (296)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555443
No 90
>PF12854 PPR_1: PPR repeat
Probab=98.58 E-value=8.2e-08 Score=59.76 Aligned_cols=33 Identities=33% Similarity=0.573 Sum_probs=27.2
Q ss_pred CCccChHHHHHHHHHHhhcCChHHHHHHHHhCC
Q 037537 466 GFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (677)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888873
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.0012 Score=67.84 Aligned_cols=408 Identities=13% Similarity=0.082 Sum_probs=214.4
Q ss_pred HHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHH--HHHHHH--hCCCh
Q 037537 40 FILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNT--LISAYA--DCGDT 112 (677)
Q Consensus 40 ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~--li~~~~--~~g~~ 112 (677)
=++.+...|++++|.+.-+.+.. .|..++.+-+-+..+.+.+++|+++.+.-... .+++. +=.+|| +.+..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 35667788999999999988887 45667888888889999999999877654421 22222 344554 68899
Q ss_pred hHHHHHHHHhHhcCCCCCcc-cHHHHHHHhhcchh--hHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChhHHHHHHh
Q 037537 113 ESALSLFKDMREKRFDTDGF-TLSGLITASSNNLC--LIKQLHCLAIYCGFD-HYASVNNSLLTCYSRNGFLDEAKRVFY 188 (677)
Q Consensus 113 ~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~f~ 188 (677)
++|+..++ |..++.. +...=-..|.+.+. .+-.|+..+.+++.+ .+...-..++..-.. -.+. +.+
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q 165 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQ 165 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHH
Confidence 99999988 4444432 22222223444554 677777777776653 223222333322111 1111 344
Q ss_pred hcCCCCCeeeHHHHH---HHHHhCCCchHHHHHHHHHHHCC-------------CCCCHhH-HHHHHHHHccCCChHHHH
Q 037537 189 EMGEIKDEVSWNSMV---VAYGQHREGLEALQLFQEMVSLQ-------------LGLDMYT-LASILTAFTSLEDLVGGL 251 (677)
Q Consensus 189 ~m~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g-------------~~pd~~t-~~~ll~a~~~~~~~~~a~ 251 (677)
.. +.....+|..+- -.+...|++.+|+++++...+.+ ++-+..+ -.-+.-++-..|+-.+|.
T Consensus 166 ~v-~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 166 SV-PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred hc-cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 44 222233444333 34566788888888888773211 0001111 112223445668888888
Q ss_pred HHHHHHHHhCCCCchh----hHHHHHHHHHHcCCCHH-HHHHHHhhCCCCChhh--------------H-HHHHhhhccc
Q 037537 252 QFHAHLIKSGFHQNSH----IGSGLIDLYAKCSGDMR-DCMKVFEEIPQPDLVL--------------W-NTMISGYSQK 311 (677)
Q Consensus 252 ~~~~~~~~~g~~~~~~----~~~~li~~y~~~g~~~~-~A~~~f~~~~~~~~~~--------------~-~~li~~~~~~ 311 (677)
.++..+++... +|.. ..|.|+.+-....- .+ .+...|+......... . +.++..|.
T Consensus 245 ~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~-~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-- 320 (652)
T KOG2376|consen 245 SIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNY-FDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-- 320 (652)
T ss_pred HHHHHHHHhcC-CCchHHHHHhcchhhhcccccc-CchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 88888877763 3332 22223322111111 11 1222222222111111 1 11222222
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHH
Q 037537 312 EEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRL 391 (677)
Q Consensus 312 ~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 391 (677)
+.-+.+.++-.... +..|. ..+..++..+.. .+......|.++
T Consensus 321 -nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~---------------------------------~~~~~~~ka~e~ 363 (652)
T KOG2376|consen 321 -NKMDQVRELSASLP--GMSPE-SLFPILLQEATK---------------------------------VREKKHKKAIEL 363 (652)
T ss_pred -hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHH---------------------------------HHHHHHhhhHHH
Confidence 11222222222111 11111 122222222211 011124455555
Q ss_pred HhcCCC----CCcchHHHHHHHHHHcCChHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037537 392 FDRMPE----HNTVSLNSMIAGYAQHGIGMEALRLFE--------WMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFS 459 (677)
Q Consensus 392 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~--------~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 459 (677)
+....+ ...+.--.++.....+|+++.|++++. ...+.+..|- +...+...+.+.++-+.|..++.
T Consensus 364 L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~ 441 (652)
T KOG2376|consen 364 LLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLD 441 (652)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHH
Confidence 554433 334455667777889999999999999 6666555554 45556666777777777777777
Q ss_pred HhHHhcCC-ccChHHHHHH----HHHHhhcCChHHHHHHHHhCCC-CCCh
Q 037537 460 MMKDMFGF-EPEGEHYSCM----IDLLGRAGKLTDAERLIEAMPF-NPGS 503 (677)
Q Consensus 460 ~m~~~~~~-~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~-~~~~ 503 (677)
....-+.. .+......++ +..=.|.|+.++|..+++++.. .|+.
T Consensus 442 ~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 442 SAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred HHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence 76654322 1222333333 3444577999999999999853 4443
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00032 Score=65.57 Aligned_cols=345 Identities=12% Similarity=0.086 Sum_probs=189.9
Q ss_pred hHHHHHHHHHccCChHHHHHHHhhccc--c-ChhHHHHHHHHHHhcCChhHHHHHhccCCC--CCcchHHH-HHHHHHhC
Q 037537 36 LSNHFILLYSKCGCLSAAHHAFNQTQH--A-NVFSFNVLLAAYARQLRIASARQLFDQIPQ--PDLVSYNT-LISAYADC 109 (677)
Q Consensus 36 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~ 109 (677)
-+.+.+..+.+-.++.+|.++...-.+ | +....+.|...|-...++..|-..++++.+ |...-|.. -.+.+.+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 355566666677778888888776555 3 444566777788888888888888888765 44444442 24556678
Q ss_pred CChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhh
Q 037537 110 GDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYE 189 (677)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 189 (677)
+.+.+|+++...|... |+ ++...++. .+ ...-..+++..++.+.++
T Consensus 92 ~i~ADALrV~~~~~D~---~~--------------------L~~~~lqL---------qa--AIkYse~Dl~g~rsLveQ 137 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PA--------------------LHSRVLQL---------QA--AIKYSEGDLPGSRSLVEQ 137 (459)
T ss_pred cccHHHHHHHHHhcCC---HH--------------------HHHHHHHH---------HH--HHhcccccCcchHHHHHh
Confidence 8888898888877642 11 11111100 01 112245778888888888
Q ss_pred cCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhH
Q 037537 190 MGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIG 269 (677)
Q Consensus 190 m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 269 (677)
...+.+..+.+...-...+.|++++|++-|+...+-+---....|+..+.-| +.++.+.|.+..++++++|+...+...
T Consensus 138 lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElg 216 (459)
T KOG4340|consen 138 LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELG 216 (459)
T ss_pred ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence 8224556666666666678888889988888887754434456676666444 567888888888888888764322211
Q ss_pred ----HHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhc-CCCCCcchHHHHHHHh
Q 037537 270 ----SGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRV-GYHPDDCSFVCVISAC 344 (677)
Q Consensus 270 ----~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~ 344 (677)
+-.++.-.- |+...-+.. .-+..+|.-...+.+. ++++.|.+-+-+|.-. .-..|++|...+--.-
T Consensus 217 IGm~tegiDvrsv-gNt~~lh~S-------al~eAfNLKaAIeyq~-~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n 287 (459)
T KOG4340|consen 217 IGMTTEGIDVRSV-GNTLVLHQS-------ALVEAFNLKAAIEYQL-RNYEAAQEALTDMPPRAEEELDPVTLHNQALMN 287 (459)
T ss_pred ccceeccCchhcc-cchHHHHHH-------HHHHHhhhhhhhhhhc-ccHHHHHHHhhcCCCcccccCCchhhhHHHHhc
Confidence 000000000 000000000 0011223333334555 6666666666666422 2344555554332211
Q ss_pred hccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCC-----CcchHHHHHHHHHHcCChHHH
Q 037537 345 SNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEH-----NTVSLNSMIAGYAQHGIGMEA 419 (677)
Q Consensus 345 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A 419 (677)
....+..+..-...+.... |-...++..++-.|||..-++.|-+++.+-... +...|+.+=..-...-.+++|
T Consensus 288 ~~~~p~~g~~KLqFLL~~n--PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea 365 (459)
T KOG4340|consen 288 MDARPTEGFEKLQFLLQQN--PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEA 365 (459)
T ss_pred ccCCccccHHHHHHHHhcC--CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHH
Confidence 1111333333333333332 222566777888888888888888888765542 233343322222233445666
Q ss_pred HHHHHHH
Q 037537 420 LRLFEWM 426 (677)
Q Consensus 420 ~~l~~~m 426 (677)
++-++.+
T Consensus 366 ~KKL~~L 372 (459)
T KOG4340|consen 366 FKKLDGL 372 (459)
T ss_pred HHHHHHH
Confidence 5544443
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.47 E-value=0.0004 Score=71.67 Aligned_cols=204 Identities=14% Similarity=0.106 Sum_probs=122.4
Q ss_pred HHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHcc
Q 037537 303 TMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKC 382 (677)
Q Consensus 303 ~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~ 382 (677)
.+...+... |++++|...+++..+. .|+. ...+..+...|...
T Consensus 119 ~~a~~~~~~-G~~~~A~~~~~~al~~--~p~~----------------------------------~~~~~~la~i~~~~ 161 (355)
T cd05804 119 MLAFGLEEA-GQYDRAEEAARRALEL--NPDD----------------------------------AWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhh--CCCC----------------------------------cHHHHHHHHHHHHc
Confidence 334455666 8888888888888764 3443 34556777888888
Q ss_pred CCHHHHHHHHhcCCC--C---Cc--chHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHhccCCH
Q 037537 383 GNLEDARRLFDRMPE--H---NT--VSLNSMIAGYAQHGIGMEALRLFEWMLETNI-PPTNITF-V--SVLSACAHTGKV 451 (677)
Q Consensus 383 g~~~~A~~~~~~~~~--~---~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~~ 451 (677)
|++++|...+++..+ + +. ..|..+...+...|+.++|+.+|++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999988887654 1 21 2355677888999999999999999865321 1222211 1 223333344433
Q ss_pred HHHHHH---HHHhHHh-cCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 452 AEGQKY---FSMMKDM-FGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 452 ~~a~~~---~~~m~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
+.+.+. ....... .+ ..........+.++...|+.++|..+++.+........ . ....+..........
T Consensus 242 ~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~-~~~~~~~~~~~~l~A 314 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSAD-----D-NKQPARDVGLPLAEA 314 (355)
T ss_pred ChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccC-----c-hhhhHHhhhHHHHHH
Confidence 333332 1111111 01 11112223566778899999999999987732100000 0 001112345566777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC
Q 037537 528 NIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 528 ~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
.++...|++++|.+.+......+
T Consensus 315 ~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 315 LYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Confidence 88899999999999999887655
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.47 E-value=2.6e-06 Score=83.49 Aligned_cols=245 Identities=16% Similarity=0.125 Sum_probs=138.3
Q ss_pred cCChhHHHHHHhhcCCCC--CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHH
Q 037537 177 NGFLDEAKRVFYEMGEIK--DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFH 254 (677)
Q Consensus 177 ~g~~~~A~~~f~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 254 (677)
.|.+..+..-.+.-...+ +.....-+.+++...|+++.++ .+.... -.|.......+...+....+-+.+..-+
T Consensus 14 ~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l 89 (290)
T PF04733_consen 14 LGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALEEL 89 (290)
T ss_dssp TT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHH
T ss_pred hhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHHHH
Confidence 456655554333111111 2223445566777777765443 222222 2455555554544444434444443333
Q ss_pred HHHHHhCCC-CchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCC
Q 037537 255 AHLIKSGFH-QNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPD 333 (677)
Q Consensus 255 ~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~ 333 (677)
...+..... .+..+......+|...|+ +++|.+++++. .+.......+..|.+. ++++.|.+.++.|.+. . +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~A~i~~~~~~-~~~AL~~l~~~--~~lE~~al~Vqi~L~~-~R~dlA~k~l~~~~~~--~-e 162 (290)
T PF04733_consen 90 KELLADQAGESNEIVQLLAATILFHEGD-YEEALKLLHKG--GSLELLALAVQILLKM-NRPDLAEKELKNMQQI--D-E 162 (290)
T ss_dssp HHCCCTS---CHHHHHHHHHHHHCCCCH-HHHHHCCCTTT--TCHHHHHHHHHHHHHT-T-HHHHHHHHHHHHCC--S-C
T ss_pred HHHHHhccccccHHHHHHHHHHHHHcCC-HHHHHHHHHcc--CcccHHHHHHHHHHHc-CCHHHHHHHHHHHHhc--C-C
Confidence 333222222 222333333345555666 88887777665 4455556667777777 8888888888888753 2 2
Q ss_pred cchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHH
Q 037537 334 DCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGY 410 (677)
Q Consensus 334 ~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 410 (677)
..+. ..+..+.+..+.-.+++.+|..+|+++.+ +++.+.|.+..++
T Consensus 163 D~~l-------------------------------~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~ 211 (290)
T PF04733_consen 163 DSIL-------------------------------TQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH 211 (290)
T ss_dssp CHHH-------------------------------HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH
T ss_pred cHHH-------------------------------HHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 2333 23334455555445578888888888765 3556677778888
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhHHh
Q 037537 411 AQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKV-AEGQKYFSMMKDM 464 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~ 464 (677)
...|++++|.+++.+..+.+ +-|..|+..++....+.|+. +.+.+++..+...
T Consensus 212 l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 212 LQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 88888888888888876643 33466777777777777777 6677888887754
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=0.00014 Score=67.97 Aligned_cols=308 Identities=15% Similarity=0.117 Sum_probs=192.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 037537 99 YNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNG 178 (677)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g 178 (677)
+++.+..+.+..++.+|++++..-.+.. | .+....+.|-..|-...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p--------------------------------~~rAgLSlLgyCYY~~Q 58 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--P--------------------------------RSRAGLSLLGYCYYRLQ 58 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--c--------------------------------cchHHHHHHHHHHHHHH
Confidence 5556666677778888888776655542 1 12333355667788888
Q ss_pred ChhHHHHHHhhc-CCCCCeeeHHH-HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHH--HccCCChHHHHHHH
Q 037537 179 FLDEAKRVFYEM-GEIKDEVSWNS-MVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTA--FTSLEDLVGGLQFH 254 (677)
Q Consensus 179 ~~~~A~~~f~~m-~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a--~~~~~~~~~a~~~~ 254 (677)
++..|-..++++ ...|...-|.. -...+.+.+.+.+|+.+...|... |+...-..-+.+ ....+|+..+..+.
T Consensus 59 ~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLv 135 (459)
T KOG4340|consen 59 EFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLV 135 (459)
T ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHH
Confidence 889998888888 23343333332 235566788899999998888653 332222222222 24567777777777
Q ss_pred HHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC----CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCC
Q 037537 255 AHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ----PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGY 330 (677)
Q Consensus 255 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~ 330 (677)
++.... .+..+.+.......+.|+ .+.|.+-|+...+ ...+.||..+..|.+ ++++.|+++..++.+.|+
T Consensus 136 eQlp~e---n~Ad~~in~gCllykegq-yEaAvqkFqaAlqvsGyqpllAYniALaHy~~--~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 136 EQLPSE---NEADGQINLGCLLYKEGQ-YEAAVQKFQAALQVSGYQPLLAYNLALAHYSS--RQYASALKHISEIIERGI 209 (459)
T ss_pred HhccCC---Cccchhccchheeecccc-HHHHHHHHHHHHhhcCCCchhHHHHHHHHHhh--hhHHHHHHHHHHHHHhhh
Confidence 665422 244445555556677788 9999999988764 455788888877764 688999999999999886
Q ss_pred CCCcch-HHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-----CCcchH
Q 037537 331 HPDDCS-FVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-----HNTVSL 403 (677)
Q Consensus 331 ~p~~~t-~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~~~ 403 (677)
+-.+.. ......+- ... +.....+|...+ +..+|.-...+.+.|+.+.|.+.+-.|+. -|++|.
T Consensus 210 r~HPElgIGm~tegi-DvrsvgNt~~lh~Sal--------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 210 RQHPELGIGMTTEGI-DVRSVGNTLVLHQSAL--------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred hcCCccCccceeccC-chhcccchHHHHHHHH--------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 532110 00000000 000 111111111111 44455556667889999999999999985 477776
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSM 460 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 460 (677)
..+.-.- ..+++.+..+-+.-+++.+ +-...||..++-.|++..-++.|-.++.+
T Consensus 281 HN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 281 HNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6554322 2344555555555555543 33467999999999999888888877654
No 96
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=3.5e-07 Score=56.91 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037537 430 NIPPTNITFVSVLSACAHTGKVAEGQKYFSMM 461 (677)
Q Consensus 430 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 461 (677)
|+.||..||+++|+++++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777766
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.40 E-value=0.00055 Score=74.24 Aligned_cols=187 Identities=12% Similarity=0.111 Sum_probs=106.4
Q ss_pred HHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037537 353 KQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMP---EHNTVSLNSMIAGYAQHGIGMEALRLFEWMLET 429 (677)
Q Consensus 353 ~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 429 (677)
..++.....-.++.++-..||+|.-. ..-|++.-|...|-.-. ..+..+|..+...+.++.+++-|...|...+..
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL 879 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL 879 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc
Confidence 33444444444444434444444333 44456666665554332 235566766666677777777777777766653
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH---hcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHH
Q 037537 430 NIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKD---MFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIAL 506 (677)
Q Consensus 430 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 506 (677)
. +.|...|......-...|+.-+...+|..-.+ ..|-.|+..-|-|....-...|+.++-..-.++++. ..
T Consensus 880 d-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s-----As 953 (1238)
T KOG1127|consen 880 D-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS-----AS 953 (1238)
T ss_pred C-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh-----hH
Confidence 2 22344554444334455555555555554111 113334444444444444556665555544444431 14
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 037537 507 KAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 507 ~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 546 (677)
.+.++.+.-.|+...+|...+...-+.+.+++|.++..+.
T Consensus 954 ~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 954 LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5667788889999999999998888889888888776654
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=0.0007 Score=71.74 Aligned_cols=383 Identities=14% Similarity=0.136 Sum_probs=198.6
Q ss_pred ChhhHHHHHH--HHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChhHHHHHhccCCC-----------CCc-ch
Q 037537 33 SAYLSNHFIL--LYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIASARQLFDQIPQ-----------PDL-VS 98 (677)
Q Consensus 33 ~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----------~~~-~~ 98 (677)
|+.|-..+++ .|...|+.+.|.+..+.+. +..+|..+.+++.+.++++-|.-.+-.|.. .|. ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 4455555553 3556677777766555544 455677777777777777777666666643 011 11
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 037537 99 YNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNG 178 (677)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g 178 (677)
-.-....-.+.|.+++|+.+|++-.+. ..|=..|-..|
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR~------------------------------------------DLlNKlyQs~g 840 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKRY------------------------------------------DLLNKLYQSQG 840 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHH------------------------------------------HHHHHHHHhcc
Confidence 111112223556677777777666542 22334566778
Q ss_pred ChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHH----------HCCC---------CCCHhHHHHHHH
Q 037537 179 FLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMV----------SLQL---------GLDMYTLASILT 239 (677)
Q Consensus 179 ~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~g~---------~pd~~t~~~ll~ 239 (677)
.+++|.++-+.-....=..||..-..-+-..++.+.|++.|++-. .... .-|...|..--.
T Consensus 841 ~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgq 920 (1416)
T KOG3617|consen 841 MWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQ 920 (1416)
T ss_pred cHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHH
Confidence 888887776543000112245555555555677777777766431 1110 112222333333
Q ss_pred HHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHH
Q 037537 240 AFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQAL 319 (677)
Q Consensus 240 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~ 319 (677)
-.-..|+.+.|+.+|..+.+ |-+++...+-.|+ +++|-++-++- .|....-.+...|-.. |++.+|.
T Consensus 921 YlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk-~~kAa~iA~es--gd~AAcYhlaR~YEn~-g~v~~Av 987 (1416)
T KOG3617|consen 921 YLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK-TDKAARIAEES--GDKAACYHLARMYEND-GDVVKAV 987 (1416)
T ss_pred HHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC-chHHHHHHHhc--ccHHHHHHHHHHhhhh-HHHHHHH
Confidence 33445666666666655443 2334444444566 77776666553 4556666777788777 8899999
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHhhccChhHHH-------------HHHHHHHHhhcccCccchhHHHHHHHHccCCHH
Q 037537 320 GCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGK-------------QIHALTIKIEIRSNRISVNNALVAMYSKCGNLE 386 (677)
Q Consensus 320 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~-------------~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 386 (677)
.+|.+.+ +|...|+.|-..+++.-. ....+..+.|.. ...-+-.|-|.|.+.
T Consensus 988 ~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~------~~~AVmLYHkAGm~~ 1052 (1416)
T KOG3617|consen 988 KFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGY------AHKAVMLYHKAGMIG 1052 (1416)
T ss_pred HHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchh------hhHHHHHHHhhcchH
Confidence 9988765 456666666554411111 111111122211 122344566677766
Q ss_pred HHHHHHhcCCC--------------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 037537 387 DARRLFDRMPE--------------HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVA 452 (677)
Q Consensus 387 ~A~~~~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 452 (677)
+|.++-=+-.+ .|+...+.-..-+..+.++++|..++-..++ |...+..|...| +.
T Consensus 1053 kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~ 1122 (1416)
T KOG3617|consen 1053 KALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VR 1122 (1416)
T ss_pred HHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-Cc
Confidence 66654221111 2333444444555666777777777665543 334445554433 22
Q ss_pred HHHHHHHHhHHhcCCccC----hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 453 EGQKYFSMMKDMFGFEPE----GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 453 ~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
-..++-+.|.-.-.-.|+ ......+.+.+.+.|.+..|-+-|...
T Consensus 1123 vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1123 VTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred hhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 222222233211011222 234555666777777777776666544
No 99
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.38 E-value=5.5e-05 Score=68.27 Aligned_cols=186 Identities=17% Similarity=0.130 Sum_probs=149.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhc
Q 037537 270 SGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSN 346 (677)
Q Consensus 270 ~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 346 (677)
..|.-.|...|+ ...|.+-+++..+ .+..+|..+...|-+. |+.+.|.+-|++... +.|+.
T Consensus 39 lqLal~YL~~gd-~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~-Ge~~~A~e~YrkAls--l~p~~------------ 102 (250)
T COG3063 39 LQLALGYLQQGD-YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKL-GENDLADESYRKALS--LAPNN------------ 102 (250)
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CChhhHHHHHHHHHh--cCCCc------------
Confidence 345567778788 8888888888764 3345788888888888 888999998888776 34543
Q ss_pred cChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-C----CcchHHHHHHHHHHcCChHHHHH
Q 037537 347 LSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-H----NTVSLNSMIAGYAQHGIGMEALR 421 (677)
Q Consensus 347 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~ 421 (677)
-.+.|.....+|..|++++|...|++... | -..+|..+.-+..+.|+.+.|.+
T Consensus 103 ----------------------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 103 ----------------------GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred ----------------------cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH
Confidence 66778899999999999999999998764 4 34589999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHh
Q 037537 422 LFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEA 496 (677)
Q Consensus 422 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (677)
.|++.++.. +-...++..+.......|++-.|..+++..... ..++.++....|..-.+.|+-+.|.+.=..
T Consensus 161 ~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 161 YLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999853 333678888888889999999999999998876 338888888888888899998888766443
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.37 E-value=1.5e-05 Score=73.71 Aligned_cols=150 Identities=12% Similarity=0.189 Sum_probs=119.7
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 453 (677)
.-+..|.+.|+++....-.+.+..+. . .|...++.++++..+++.++.. +.|...|..+...+...|++++
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 34567889999888766554433321 0 1223567788888899888865 6668899999999999999999
Q ss_pred HHHHHHHhHHhcCCcc-ChHHHHHHHHH-HhhcCC--hHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHH
Q 037537 454 GQKYFSMMKDMFGFEP-EGEHYSCMIDL-LGRAGK--LTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANI 529 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~ 529 (677)
|...|+...+. .| +...+..+..+ +.+.|+ .++|.+++++. ++++|+++.++..|...
T Consensus 92 A~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a---------------l~~dP~~~~al~~LA~~ 153 (198)
T PRK10370 92 ALLAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKA---------------LALDANEVTALMLLASD 153 (198)
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH---------------HHhCCCChhHHHHHHHH
Confidence 99999999864 55 57788888886 467787 58999999876 58889999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 037537 530 YAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 530 y~~~g~~~~a~~~~~~m~~~g 550 (677)
+...|++++|...|+++.+..
T Consensus 154 ~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 154 AFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999998754
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.37 E-value=0.00051 Score=70.83 Aligned_cols=291 Identities=9% Similarity=-0.074 Sum_probs=170.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhc--CCCCCeee---HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHH---H
Q 037537 167 NNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVS---WNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-MYTLAS---I 237 (677)
Q Consensus 167 ~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~---l 237 (677)
+..+...|...|+.+++.+.+... ...++... .......+...|++++|.+++++..+.. |+ ...+.. .
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~ 86 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhHHH
Confidence 344445566667777766666554 12222222 2222345677899999999999988753 43 333332 1
Q ss_pred HHHHccCCChHHHHHHHHHHHHhCCCCc-hhhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCC
Q 037537 238 LTAFTSLEDLVGGLQFHAHLIKSGFHQN-SHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEE 313 (677)
Q Consensus 238 l~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~ 313 (677)
.......+..+.+.+.+.. .....|+ ......+...+...|+ +++|.+.+++..+ .+...+..+...|... |
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~-~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~-g 162 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ-YDRAEEAARRALELNPDDAWAVHAVAHVLEMQ-G 162 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc-C
Confidence 1111223444555554443 1122233 3344455667888899 9999999998763 4456677788888888 9
Q ss_pred CHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHh
Q 037537 314 YSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFD 393 (677)
Q Consensus 314 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 393 (677)
++++|..++.+....... +.... ...+..+...+...|+.++|..+|+
T Consensus 163 ~~~eA~~~l~~~l~~~~~-~~~~~-------------------------------~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 163 RFKEGIAFMESWRDTWDC-SSMLR-------------------------------GHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred CHHHHHHHHHhhhhccCC-Ccchh-------------------------------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999988764211 11111 2334567788899999999999999
Q ss_pred cCCCCCc--chHH------HHHHHHHHcCChHHHHHHHHHHHH---CCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037537 394 RMPEHNT--VSLN------SMIAGYAQHGIGMEALRLFEWMLE---TNIP--PTNITFVSVLSACAHTGKVAEGQKYFSM 460 (677)
Q Consensus 394 ~~~~~~~--~~~~------~li~~~~~~g~~~~A~~l~~~m~~---~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 460 (677)
+...++. ..+. .++.-+...|....+..+ +.+.. ...+ ...........++...|+.++|...++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 211 THIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 8753222 2222 222233344433333332 22211 1111 1112223566677889999999999998
Q ss_pred hHHhcCCcc--------ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 461 MKDMFGFEP--------EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 461 m~~~~~~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+... ...+ .+.......-++.+.|+.++|.+.+...
T Consensus 290 l~~~-~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 290 LKGR-ASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred HHHH-HhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8764 2110 1222233334566999999999998865
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.31 E-value=2e-05 Score=75.99 Aligned_cols=163 Identities=12% Similarity=0.099 Sum_probs=120.6
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC--CC-c---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE--HN-T---VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNI----TF 438 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~ 438 (677)
+..+..+...|.+.|++++|...|+++.+ |+ . ..|..+..+|.+.|++++|+..|+++.+. .|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHH
Confidence 55667777888899999999999988764 32 2 35677888999999999999999999884 34321 34
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCccChH-HH-----------------HHHHHHHhhcCChHHHHH
Q 037537 439 VSVLSACAHT--------GKVAEGQKYFSMMKDMFGFEPEGE-HY-----------------SCMIDLLGRAGKLTDAER 492 (677)
Q Consensus 439 ~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~-----------------~~li~~~~~~g~~~~A~~ 492 (677)
..+..++... |+.++|.+.|+.+.+. .|+.. .+ ..+.+.|.+.|++++|..
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 4444444443 7889999999999875 34322 11 134567888899999999
Q ss_pred HHHhCCC-CCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 493 LIEAMPF-NPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 493 ~~~~m~~-~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+++... .|+ .|..+..+..++.+|...|++++|..+++.+..+
T Consensus 188 ~~~~al~~~p~-------------~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 188 RFETVVENYPD-------------TPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHCCC-------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9887621 111 2345678999999999999999999999988754
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.29 E-value=1.8e-05 Score=69.23 Aligned_cols=123 Identities=10% Similarity=0.058 Sum_probs=97.7
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc
Q 037537 390 RLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP 469 (677)
Q Consensus 390 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 469 (677)
.+|++..+-++..+..+...+.+.|++++|...|+...... +.+..++..+..++...|++++|...|+...+. .|
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l---~p 89 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML---DA 89 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CC
Confidence 34444444344456667788899999999999999998854 446788888999999999999999999999863 45
Q ss_pred -ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 037537 470 -EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYA 531 (677)
Q Consensus 470 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~ 531 (677)
+...+..+..++.+.|++++|.+.++.. +++.|+++..|....++..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~A---------------l~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTA---------------IKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCChHHHHHHHHHHH
Confidence 6788888999999999999999999876 5777888888877665543
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.26 E-value=0.0054 Score=72.04 Aligned_cols=261 Identities=12% Similarity=0.080 Sum_probs=162.1
Q ss_pred HHHHhcCChhHHHHHHhhc-C--CCCCe----eeHHHHHHHHHhCCCchHHHHHHHHHHHCCCC---C--CHhHHHHHHH
Q 037537 172 TCYSRNGFLDEAKRVFYEM-G--EIKDE----VSWNSMVVAYGQHREGLEALQLFQEMVSLQLG---L--DMYTLASILT 239 (677)
Q Consensus 172 ~~~~~~g~~~~A~~~f~~m-~--~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p--d~~t~~~ll~ 239 (677)
..+...|++++|...+++. . ...+. ..++.+...+...|++++|...+++.....-. + ...++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 4566789999999988875 1 11121 23455666777899999999999888643111 1 1234455566
Q ss_pred HHccCCChHHHHHHHHHHHHh----CCCC---chhhHHHHHHHHHHcCCCHHHHHHHHhhCCC------CC--hhhHHHH
Q 037537 240 AFTSLEDLVGGLQFHAHLIKS----GFHQ---NSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ------PD--LVLWNTM 304 (677)
Q Consensus 240 a~~~~~~~~~a~~~~~~~~~~----g~~~---~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~------~~--~~~~~~l 304 (677)
.+...|+++.|...+....+. +... ....+..+...+...|+ +++|...+++... +. ...+..+
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR-LDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC-HHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 778899999999998877653 2111 12234445556666688 9999888877532 11 2233334
Q ss_pred HhhhcccCCCHHHHHHHHHHHhhcCCCCC-cchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccC
Q 037537 305 ISGYSQKEEYSDQALGCFKKLNRVGYHPD-DCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCG 383 (677)
Q Consensus 305 i~~~~~~~~~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g 383 (677)
...+... |++++|.+.+.+.....-... ...+. .......+..+...|
T Consensus 619 a~~~~~~-G~~~~A~~~l~~a~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~g 667 (903)
T PRK04841 619 AKISLAR-GDLDNARRYLNRLENLLGNGRYHSDWI------------------------------ANADKVRLIYWQMTG 667 (903)
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHhcccccHhHh------------------------------hHHHHHHHHHHHHCC
Confidence 4455666 888999888887754211111 00000 000111224445578
Q ss_pred CHHHHHHHHhcCCCCCcc-------hHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCH
Q 037537 384 NLEDARRLFDRMPEHNTV-------SLNSMIAGYAQHGIGMEALRLFEWMLET----NIPPT-NITFVSVLSACAHTGKV 451 (677)
Q Consensus 384 ~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~ 451 (677)
+.+.|...+.....+... .+..+..++...|++++|..++++.... |..++ ..+...+..++...|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 888888888765542211 1345667788889999999998887653 32332 23555666677788999
Q ss_pred HHHHHHHHHhHHh
Q 037537 452 AEGQKYFSMMKDM 464 (677)
Q Consensus 452 ~~a~~~~~~m~~~ 464 (677)
++|...+.+..+.
T Consensus 748 ~~A~~~L~~Al~l 760 (903)
T PRK04841 748 SEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888888765
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.25 E-value=0.00013 Score=81.50 Aligned_cols=230 Identities=13% Similarity=0.070 Sum_probs=169.9
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc--------cChhHHHHHHHHHHhcCChhHHHHHhccC
Q 037537 20 SLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH--------ANVFSFNVLLAAYARQLRIASARQLFDQI 91 (677)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~f~~m 91 (677)
+=|++++..+ |.+...|-.-+......+++++|++++++... .-...|.++++.-...|.-+...++|++.
T Consensus 1445 eDferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1445 EDFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 3455666555 77788899999999999999999999999887 22347888888888888888999999998
Q ss_pred CC-CC-cchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCCC-CChhH
Q 037537 92 PQ-PD-LVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGFD-HYASV 166 (677)
Q Consensus 92 ~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~-~~~~~ 166 (677)
.+ -| -..|..|...|.+.+.+++|-++|+.|.+. +.-....|........+..+ .++.+....+++--. -...+
T Consensus 1524 cqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1524 CQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred HHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 77 34 346889999999999999999999999876 23455566666666666655 666676666665322 24556
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH--hHHHHHHHHHc
Q 037537 167 NNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDM--YTLASILTAFT 242 (677)
Q Consensus 167 ~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~ 242 (677)
....+.+-.++|+.+.++.+|+.. .-+.-...|+..|..=.++|+.+.+..+|++....++.|-. +-|.-.|.---
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 667777788889999999999887 22234567999999999999999999999999888776642 33444444333
Q ss_pred cCCChHHHH
Q 037537 243 SLEDLVGGL 251 (677)
Q Consensus 243 ~~~~~~~a~ 251 (677)
..|+-..++
T Consensus 1683 ~~Gde~~vE 1691 (1710)
T KOG1070|consen 1683 SHGDEKNVE 1691 (1710)
T ss_pred hcCchhhHH
Confidence 334433333
No 106
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=2.3e-06 Score=54.15 Aligned_cols=35 Identities=43% Similarity=0.598 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN 435 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 435 (677)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 107
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=0.0057 Score=62.35 Aligned_cols=98 Identities=16% Similarity=0.089 Sum_probs=75.9
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc--cCh-hHHHHHHHHHHhcCChhHH
Q 037537 8 TCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH--ANV-FSFNVLLAAYARQLRIASA 84 (677)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A 84 (677)
+....|+++.|...|...+... |++-..|..-..+|++.|++++|.+=-....+ |+- ..|+.+..++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 4456789999999999999887 66888888889999999999998877666666 442 3688888888888999999
Q ss_pred HHHhccCCC--C-CcchHHHHHHHH
Q 037537 85 RQLFDQIPQ--P-DLVSYNTLISAY 106 (677)
Q Consensus 85 ~~~f~~m~~--~-~~~~~~~li~~~ 106 (677)
...|.+-.+ | |...++-+..++
T Consensus 90 ~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999988765 2 344455555555
No 108
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.2e-06 Score=54.26 Aligned_cols=35 Identities=46% Similarity=0.721 Sum_probs=33.1
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCc
Q 037537 97 VSYNTLISAYADCGDTESALSLFKDMREKRFDTDG 131 (677)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 131 (677)
.+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999984
No 109
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=9.1e-05 Score=75.18 Aligned_cols=126 Identities=15% Similarity=0.164 Sum_probs=106.7
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGK 450 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 450 (677)
+..+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.++.. +-|...+..-...|...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 334566667778999999999999998887778889999999999999999999999753 4455666666677889999
Q ss_pred HHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 037537 451 VAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFN 500 (677)
Q Consensus 451 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (677)
.+.|+.+.+++.+ ..|+ ..+|..|..+|.+.|++++|+..++.+|..
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999985 4675 669999999999999999999999998754
No 110
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.18 E-value=0.0064 Score=58.32 Aligned_cols=309 Identities=12% Similarity=0.122 Sum_probs=182.0
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCcchHHHHH---HHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhh
Q 037537 71 LLAAYARQLRIASARQLFDQIPQPDLVSYNTLI---SAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCL 147 (677)
Q Consensus 71 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 147 (677)
|.+.+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.=|.+.++. +||-.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~--------------- 106 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFM--------------- 106 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHH---------------
Confidence 455556678888888888888888888887775 4688888888888888887763 56522
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 037537 148 IKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQ 226 (677)
Q Consensus 148 ~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 226 (677)
...++.| ..+.+.|.++.|..=|+.+ ...|+..+ ...++.+.- +.+++.
T Consensus 107 -----~ARiQRg------------~vllK~Gele~A~~DF~~vl~~~~s~~~---~~eaqskl~-------~~~e~~--- 156 (504)
T KOG0624|consen 107 -----AARIQRG------------VVLLKQGELEQAEADFDQVLQHEPSNGL---VLEAQSKLA-------LIQEHW--- 156 (504)
T ss_pred -----HHHHHhc------------hhhhhcccHHHHHHHHHHHHhcCCCcch---hHHHHHHHH-------hHHHHH---
Confidence 1112222 3466889999999999988 23332211 111221111 111111
Q ss_pred CCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhC---CCCChhhHHH
Q 037537 227 LGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEI---PQPDLVLWNT 303 (677)
Q Consensus 227 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~---~~~~~~~~~~ 303 (677)
.....+..+...|+...+.....++++.. +.|...+..-..+|...|. +..|+.-+... .+.++...--
T Consensus 157 ------~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e-~k~AI~Dlk~askLs~DnTe~~yk 228 (504)
T KOG0624|consen 157 ------VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGE-PKKAIHDLKQASKLSQDNTEGHYK 228 (504)
T ss_pred ------HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCc-HHHHHHHHHHHHhccccchHHHHH
Confidence 12233344556677777777777777664 5677777777788888777 77776555443 3455566666
Q ss_pred HHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHH--HHHHc
Q 037537 304 MISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALV--AMYSK 381 (677)
Q Consensus 304 li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li--~~y~k 381 (677)
+-.-+... |+.+.++...++-++ +.||....-..-.-.- .+. -+|- .....
T Consensus 229 is~L~Y~v-gd~~~sL~~iRECLK--ldpdHK~Cf~~YKklk--------Kv~----------------K~les~e~~ie 281 (504)
T KOG0624|consen 229 ISQLLYTV-GDAENSLKEIRECLK--LDPDHKLCFPFYKKLK--------KVV----------------KSLESAEQAIE 281 (504)
T ss_pred HHHHHHhh-hhHHHHHHHHHHHHc--cCcchhhHHHHHHHHH--------HHH----------------HHHHHHHHHHh
Confidence 66666677 888888888877765 4677543211111100 000 0111 11123
Q ss_pred cCCHHHHHHHHhcCCC--C--Ccc---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH
Q 037537 382 CGNLEDARRLFDRMPE--H--NTV---SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 382 ~g~~~~A~~~~~~~~~--~--~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 453 (677)
.+++.++.+..+...+ | ..+ .+..+-.+|...|++.+|++.-.+.++ +.|| ..++.-=..++.-..++|.
T Consensus 282 ~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 282 EKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred hhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHH
Confidence 3444444444444332 1 112 233455566667777777777777766 4455 5566666666666667777
Q ss_pred HHHHHHHhHH
Q 037537 454 GQKYFSMMKD 463 (677)
Q Consensus 454 a~~~~~~m~~ 463 (677)
|..-|+...+
T Consensus 360 AI~dye~A~e 369 (504)
T KOG0624|consen 360 AIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.18 E-value=0.0055 Score=71.94 Aligned_cols=334 Identities=10% Similarity=-0.039 Sum_probs=195.4
Q ss_pred HHhcCChhHHHHHHhhcC---CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCC------CCCHh--HHHHHHHHHc
Q 037537 174 YSRNGFLDEAKRVFYEMG---EIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQL------GLDMY--TLASILTAFT 242 (677)
Q Consensus 174 ~~~~g~~~~A~~~f~~m~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~pd~~--t~~~ll~a~~ 242 (677)
....|+++.+...++.++ ...+..........+...|++++|...+......-- .|... ....+-..+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445677777777777761 111222233344455677899999888887754211 11111 1112223345
Q ss_pred cCCChHHHHHHHHHHHHhCCCCch----hhHHHHHHHHHHcCCCHHHHHHHHhhCCC-------CCh--hhHHHHHhhhc
Q 037537 243 SLEDLVGGLQFHAHLIKSGFHQNS----HIGSGLIDLYAKCSGDMRDCMKVFEEIPQ-------PDL--VLWNTMISGYS 309 (677)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~~A~~~f~~~~~-------~~~--~~~~~li~~~~ 309 (677)
..|+++.+...+....+.--..+. ...+.+...+...|+ +++|...+++... +.. .+++.+...+.
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~-~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE-LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678888888888887763111111 233445555666777 8888887776541 111 23344445566
Q ss_pred ccCCCHHHHHHHHHHHhhcCC---CCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHH
Q 037537 310 QKEEYSDQALGCFKKLNRVGY---HPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLE 386 (677)
Q Consensus 310 ~~~~~~~~A~~l~~~m~~~g~---~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 386 (677)
.. |++++|...+++.....- .++... . ...+..+...+...|+++
T Consensus 543 ~~-G~~~~A~~~~~~al~~~~~~~~~~~~~------------------------------~-~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 543 AQ-GFLQAAYETQEKAFQLIEEQHLEQLPM------------------------------H-EFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HC-CCHHHHHHHHHHHHHHHHHhccccccH------------------------------H-HHHHHHHHHHHHHhcCHH
Confidence 66 888888888777654200 011000 0 122344556667789999
Q ss_pred HHHHHHhcCCC------C--CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHhccCCHH
Q 037537 387 DARRLFDRMPE------H--NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNI-PPTNITF-----VSVLSACAHTGKVA 452 (677)
Q Consensus 387 ~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-----~~ll~a~~~~g~~~ 452 (677)
+|...+++... + ....+..+...+...|+.++|...+.+.....- ......+ ...+..+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 99888876532 1 123444566678889999999999988864211 1111111 11123345578999
Q ss_pred HHHHHHHHhHHhcCCccC---hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHH
Q 037537 453 EGQKYFSMMKDMFGFEPE---GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANI 529 (677)
Q Consensus 453 ~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~ 529 (677)
.|.+.+...... ..... ...+..+..++...|+.++|...+++.... . .-....+....++..+..+
T Consensus 671 ~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~--------~-~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 671 AAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN--------A-RSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------H-HHhCchHHHHHHHHHHHHH
Confidence 999987765432 11111 111345667788999999999999876310 0 0001111233567788899
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 037537 530 YAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 530 y~~~g~~~~a~~~~~~m~~~g 550 (677)
|...|+.++|...+.+..+..
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999987754
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=4.5e-05 Score=79.76 Aligned_cols=223 Identities=17% Similarity=0.137 Sum_probs=136.1
Q ss_pred CCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHH
Q 037537 261 GFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCV 340 (677)
Q Consensus 261 g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~l 340 (677)
+++|-...-..+...+.++|- ...|..+|+++ ..|.-.|-.|+.. |+..+|..+..+-.+ -+||..-|
T Consensus 393 ~lpp~Wq~q~~laell~slGi-tksAl~I~Erl-----emw~~vi~CY~~l-g~~~kaeei~~q~le--k~~d~~ly--- 460 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGI-TKSALVIFERL-----EMWDPVILCYLLL-GQHGKAEEINRQELE--KDPDPRLY--- 460 (777)
T ss_pred CCCCcchHHHHHHHHHHHcch-HHHHHHHHHhH-----HHHHHHHHHHHHh-cccchHHHHHHHHhc--CCCcchhH---
Confidence 355666677788889999999 99999999986 4677888889988 888889888887776 35665444
Q ss_pred HHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHH
Q 037537 341 ISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEAL 420 (677)
Q Consensus 341 l~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 420 (677)
..+.|......-+++|.++++....+--.+|+.++ ..++++.++.
T Consensus 461 --------------------------------c~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~---~~~~~fs~~~ 505 (777)
T KOG1128|consen 461 --------------------------------CLLGDVLHDPSLYEKAWELSNYISARAQRSLALLI---LSNKDFSEAD 505 (777)
T ss_pred --------------------------------HHhhhhccChHHHHHHHHHhhhhhHHHHHhhcccc---ccchhHHHHH
Confidence 44444444444455555555544332111222111 2256666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCC
Q 037537 421 RLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPF 499 (677)
Q Consensus 421 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (677)
+.|+.-.+.+ +.-..||-.+-.+..+.++++.+.+.|..-.. ..|| ...||.+-.+|.+.|+-.+|...+++..
T Consensus 506 ~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl- 580 (777)
T KOG1128|consen 506 KHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL- 580 (777)
T ss_pred HHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh-
Confidence 6666655532 22344555555555666666666666666553 3454 4566666666666666666666666552
Q ss_pred CCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 500 NPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 500 ~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+-+-++...|...+-.-.+-|.|++|.+...+|.+.
T Consensus 581 --------------Kcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 581 --------------KCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred --------------hcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 111234445555555556666677776666666543
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=6e-05 Score=78.86 Aligned_cols=226 Identities=11% Similarity=0.061 Sum_probs=141.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCC
Q 037537 202 MVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSG 281 (677)
Q Consensus 202 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 281 (677)
+...+...|-..+|+.+|++... +..++.+|...|+..+|..+..+.++ -+||...|..+.+......-
T Consensus 404 laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 44445555555555555554422 33344455555555555555555544 25666666666666555444
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHH
Q 037537 282 DMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIK 361 (677)
Q Consensus 282 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~ 361 (677)
+++|.++++....+--..|+.. ..++ ++++++.+.|+.-.+. .|-.
T Consensus 473 -yEkawElsn~~sarA~r~~~~~---~~~~-~~fs~~~~hle~sl~~--nplq--------------------------- 518 (777)
T KOG1128|consen 473 -YEKAWELSNYISARAQRSLALL---ILSN-KDFSEADKHLERSLEI--NPLQ--------------------------- 518 (777)
T ss_pred -HHHHHHHhhhhhHHHHHhhccc---cccc-hhHHHHHHHHHHHhhc--Cccc---------------------------
Confidence 7777777776554322222222 2235 7888888888765542 1211
Q ss_pred hhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 037537 362 IEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITF 438 (677)
Q Consensus 362 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 438 (677)
..+|-.+..+..++++++.|.+.|..... | +..+||.+-.+|.+.|+-.+|...+++..+.+ .-+...|
T Consensus 519 -------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iW 590 (777)
T KOG1128|consen 519 -------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIW 590 (777)
T ss_pred -------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeee
Confidence 44556666677788888888888877653 4 45689999999999999999999999998877 4444555
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHH
Q 037537 439 VSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL 480 (677)
Q Consensus 439 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 480 (677)
...+......|.+++|.+.+..+........|..+-.-++..
T Consensus 591 ENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 591 ENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred echhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHH
Confidence 556666678889999988888877542233355555444443
No 114
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=0.00016 Score=73.89 Aligned_cols=248 Identities=12% Similarity=0.097 Sum_probs=148.4
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHH
Q 037537 206 YGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRD 285 (677)
Q Consensus 206 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~ 285 (677)
+.++|+..+|.-.|+..+.... -+...|-.|-...+..++-..|+..+...++.. +.+..+.-+|.-.|...|. -.+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~-q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL-QNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh-HHH
Confidence 3455666666666665555321 134455555555555555555665555555543 3344555555556666555 555
Q ss_pred HHHHHhhCCCCChhhHHHHH-----------hhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHH
Q 037537 286 CMKVFEEIPQPDLVLWNTMI-----------SGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQ 354 (677)
Q Consensus 286 A~~~f~~~~~~~~~~~~~li-----------~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 354 (677)
|.+.|+.-.... ..|..+. ..+... .......++|-++..
T Consensus 372 Al~~L~~Wi~~~-p~y~~l~~a~~~~~~~~~~s~~~~-~~l~~i~~~fLeaa~--------------------------- 422 (579)
T KOG1125|consen 372 ALKMLDKWIRNK-PKYVHLVSAGENEDFENTKSFLDS-SHLAHIQELFLEAAR--------------------------- 422 (579)
T ss_pred HHHHHHHHHHhC-ccchhccccCccccccCCcCCCCH-HHHHHHHHHHHHHHH---------------------------
Confidence 555555431100 0000000 111111 222233333333322
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 037537 355 IHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNI 431 (677)
Q Consensus 355 i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 431 (677)
..+...| +.++..|.-.|--.|++++|.+.|+.... | |...||.|...++...+.++|++.|++.++ +
T Consensus 423 ------~~~~~~D-pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--L 493 (579)
T KOG1125|consen 423 ------QLPTKID-PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--L 493 (579)
T ss_pred ------hCCCCCC-hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--c
Confidence 2222234 77888898889999999999999998764 3 678999999999999999999999999999 7
Q ss_pred CCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--------ccChHHHHHHHHHHhhcCChHHHHHHH
Q 037537 432 PPTN-ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGF--------EPEGEHYSCMIDLLGRAGKLTDAERLI 494 (677)
Q Consensus 432 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--------~p~~~~~~~li~~~~~~g~~~~A~~~~ 494 (677)
+|+- .+...|.-+|...|.+++|...|-........ .++...|..|=.++.-.++.+-+.+..
T Consensus 494 qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 494 QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 8883 45555666799999999999888766543111 112345666555555555555444443
No 115
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.12 E-value=0.0013 Score=71.40 Aligned_cols=176 Identities=18% Similarity=0.134 Sum_probs=110.0
Q ss_pred hHHHHHHHhhccccCh---hHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhH
Q 037537 50 LSAAHHAFNQTQHANV---FSFNVLLAAYARQLRIASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMR 123 (677)
Q Consensus 50 ~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 123 (677)
...|...|=+..+.|+ ..|..|..-|...-+...|.+.|+..-+ .|..++......|++..+++.|..+.-.--
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 3344444444444332 3577888888777788888888888766 356778888899999999999988832221
Q ss_pred hcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-C-CCCCeeeHHH
Q 037537 124 EKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-G-EIKDEVSWNS 201 (677)
Q Consensus 124 ~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~-~~~~~~~~~~ 201 (677)
+. .| .....+.+.. .| -.|.+.++...|..-|+.. . .+.|...|..
T Consensus 554 qk--a~-----------------a~~~k~nW~~-rG------------~yyLea~n~h~aV~~fQsALR~dPkD~n~W~g 601 (1238)
T KOG1127|consen 554 QK--AP-----------------AFACKENWVQ-RG------------PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLG 601 (1238)
T ss_pred hh--ch-----------------HHHHHhhhhh-cc------------ccccCccchhhHHHHHHHHhcCCchhHHHHHH
Confidence 11 11 0011111111 11 2455667777777777766 2 3347778888
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH--HHccCCChHHHHHHHHHHHHh
Q 037537 202 MVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILT--AFTSLEDLVGGLQFHAHLIKS 260 (677)
Q Consensus 202 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~--a~~~~~~~~~a~~~~~~~~~~ 260 (677)
+..+|...|++..|+++|.+... +.|+. +|..... .-+..|.+.++...++.++..
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 88999999999999999887765 44543 2222222 224567778888777776654
No 116
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.08 E-value=0.012 Score=56.62 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=58.4
Q ss_pred HHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHH---HHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHH-HHHHHccCCC
Q 037537 171 LTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMV---VAYGQHREGLEALQLFQEMVSLQLGLDMYTLAS-ILTAFTSLED 246 (677)
Q Consensus 171 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~a~~~~~~ 246 (677)
-..+...|++.+|+.-|... ..-|...|.++. ..|...|+..-|+.=|.+.++ ++||-..-.. --..+.+.|.
T Consensus 45 Gk~lla~~Q~sDALt~yHaA-ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAA-VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 34455567888888888877 666666676665 457777888888887777776 5666432211 1123456777
Q ss_pred hHHHHHHHHHHHHhC
Q 037537 247 LVGGLQFHAHLIKSG 261 (677)
Q Consensus 247 ~~~a~~~~~~~~~~g 261 (677)
++.|..-|..+++..
T Consensus 122 le~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHE 136 (504)
T ss_pred HHHHHHHHHHHHhcC
Confidence 888887777777663
No 117
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.08 E-value=0.019 Score=58.76 Aligned_cols=176 Identities=14% Similarity=0.118 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHhhcC-CCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHH
Q 037537 315 SDQALGCFKKLNRVG-YHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLF 392 (677)
Q Consensus 315 ~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~ 392 (677)
.+...+.+.++...- ..|+ .+|...++..-+.. ++.++.++....+.+..+..+.++++++.-|+ .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 455566666665433 3444 56777777777776 99999999999998887744899999999887 46788899999
Q ss_pred hcCCC--CCcc-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-
Q 037537 393 DRMPE--HNTV-SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN--ITFVSVLSACAHTGKVAEGQKYFSMMKDMFG- 466 (677)
Q Consensus 393 ~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 466 (677)
+.-.+ +|.. --...+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+.-|++..+.++-+++...|.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 86554 3433 3455666677788888899999999988777774 6899999988999999998888888776544
Q ss_pred -CccChHHHHHHHHHHhhcCChHHHHH
Q 037537 467 -FEPEGEHYSCMIDLLGRAGKLTDAER 492 (677)
Q Consensus 467 -~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (677)
..|...+-..+++.|+=.+....-..
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccccHH
Confidence 44444455556676665555443333
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.08 E-value=7e-05 Score=65.47 Aligned_cols=109 Identities=13% Similarity=0.043 Sum_probs=92.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCC
Q 037537 420 LRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 420 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (677)
..+|++.++ +.|+. +.....++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A- 84 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHA- 84 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH-
Confidence 346666666 45664 45567778899999999999999985 355 6788899999999999999999999987
Q ss_pred CCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 499 FNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 499 ~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
++++|+++..+..+..++...|++++|...+++..+..
T Consensus 85 --------------l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 85 --------------LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred --------------HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 57889999999999999999999999999999987644
No 119
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.07 E-value=6.6e-06 Score=51.60 Aligned_cols=34 Identities=38% Similarity=0.718 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCC
Q 037537 96 LVSYNTLISAYADCGDTESALSLFKDMREKRFDT 129 (677)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 129 (677)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999988
No 120
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.05 E-value=0.00068 Score=76.03 Aligned_cols=223 Identities=13% Similarity=0.122 Sum_probs=158.0
Q ss_pred CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-----CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhH
Q 037537 195 DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGL-----DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIG 269 (677)
Q Consensus 195 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 269 (677)
+...|-..|....+.++.++|.+++++.+.. +.+ -...|.++++.-..-|.-+...++|+++.+.. ....+|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4556888888888888888888888887653 211 12345555555555566677777777777652 234577
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhc
Q 037537 270 SGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSN 346 (677)
Q Consensus 270 ~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 346 (677)
..|...|.+.+. .++|.++|+.|.+ .....|...+..+.+. ++-++|..++.+.++. -|....
T Consensus 1534 ~~L~~iy~k~ek-~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~-ne~~aa~~lL~rAL~~--lPk~eH---------- 1599 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEK-NDEADELLRLMLKKFGQTRKVWIMYADFLLRQ-NEAEAARELLKRALKS--LPKQEH---------- 1599 (1710)
T ss_pred HHHHHHHHHhhc-chhHHHHHHHHHHHhcchhhHHHHHHHHHhcc-cHHHHHHHHHHHHHhh--cchhhh----------
Confidence 788888888777 8888888888864 3556788888888877 7777777787777653 222110
Q ss_pred cChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHH
Q 037537 347 LSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLF 423 (677)
Q Consensus 347 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 423 (677)
+.+..-.+.+-.++|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|
T Consensus 1600 ----------------------v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1600 ----------------------VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred ----------------------HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 44445667777899999999999998764 34668999999999999999999999
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHH
Q 037537 424 EWMLETNIPPTN--ITFVSVLSACAHTGKVAEGQK 456 (677)
Q Consensus 424 ~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~ 456 (677)
++....++.|-. ..|.-.|..=.+.|+-+.++.
T Consensus 1658 eRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1658 ERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 999999888763 456666665556665444433
No 121
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=8.2e-06 Score=51.17 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPP 433 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 433 (677)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.99 E-value=0.00032 Score=67.56 Aligned_cols=125 Identities=15% Similarity=0.137 Sum_probs=78.0
Q ss_pred hHHHHHHHHccCCHHHHHHHHhcCCC--CC-cc---hHHHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCH-H
Q 037537 372 NNALVAMYSKCGNLEDARRLFDRMPE--HN-TV---SLNSMIAGYAQH--------GIGMEALRLFEWMLETNIPPTN-I 436 (677)
Q Consensus 372 ~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~---~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~-~ 436 (677)
+..+...|.+.|++++|...|+++.+ |+ .. .+..+..++.+. |+.++|.+.|+++.+. .|+. .
T Consensus 73 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 150 (235)
T TIGR03302 73 QLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEY 150 (235)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChh
Confidence 34445555556666666666665533 21 11 233333334332 5566667776666653 2332 1
Q ss_pred HH-----------------HHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCC
Q 037537 437 TF-----------------VSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 437 t~-----------------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (677)
.. ..+...+...|++++|...++...+.+.-.| ....+..+..+|.+.|++++|...++.+.
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 1334556788999999999999987643333 35678889999999999999999988764
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.96 E-value=0.00074 Score=74.31 Aligned_cols=127 Identities=11% Similarity=0.087 Sum_probs=66.7
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCM 477 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 477 (677)
+..+-.|.....+.|+.++|..+++...+ +.|| ......+...+.+.+.+++|....+..... .|+ ......+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~~ 160 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILLE 160 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHHH
Confidence 34444455555555555555555555555 3444 334445555555555555555555555432 333 3444445
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 037537 478 IDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 546 (677)
..++.+.|++++|.++|++.. ...|+++.++..+..++-..|+.++|...|++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~---------------~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLS---------------RQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHH---------------hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555542 223444555555555555555555555555554
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.93 E-value=0.00015 Score=62.88 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=87.2
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 037537 422 LFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFN 500 (677)
Q Consensus 422 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (677)
+|++.+. ..|+ ......+...+...|++++|.+.|+.+.+. -+.+...+..+...|.+.|++++|...++..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~--- 77 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALA--- 77 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4566665 3454 345666677788899999999999998764 2336778888889999999999999998866
Q ss_pred CChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 501 PGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 501 ~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
++++|+++..|..+..+|...|++++|...+++..+..
T Consensus 78 ------------~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 78 ------------AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred ------------HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45678888999999999999999999999998877643
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.90 E-value=0.039 Score=56.50 Aligned_cols=126 Identities=17% Similarity=0.246 Sum_probs=103.7
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC-----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE-----HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLS 443 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 443 (677)
..+|-.+++.-.+..-++.|+.+|.+..+ .++...++++.-|+ .++..-|..+|+-=++. +..++.-....++
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLD 443 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHH
Confidence 57888899999999999999999998875 26677788887666 46678999999986654 2334455566778
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCccC--hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 444 ACAHTGKVAEGQKYFSMMKDMFGFEPE--GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
-+++.++-..++.+|+..... ++.|+ .+.|..+++-=..-|++..+.++-+++
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 888999999999999999987 77776 679999999989999999999998776
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.87 E-value=0.0015 Score=65.83 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=109.5
Q ss_pred HHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 453 (677)
.+...|++++|+..++.+.. | |+..+......+..+|+.++|.+.+++++.. .|+ ......+..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34567888899988888753 3 6666777788899999999999999999984 677 5566677788999999999
Q ss_pred HHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 037537 454 GQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAAS 533 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~ 533 (677)
|..+++.... ..+-|+..|..|..+|...|+..+|..-.- ..|+..
T Consensus 393 ai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~A--------------------------------E~~~~~ 438 (484)
T COG4783 393 AIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARA--------------------------------EGYALA 438 (484)
T ss_pred HHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHH--------------------------------HHHHhC
Confidence 9999988876 355678899999999999998877766544 447778
Q ss_pred CChHHHHHHHHHHHhCC
Q 037537 534 GKWEEVATIRRLMRDRG 550 (677)
Q Consensus 534 g~~~~a~~~~~~m~~~g 550 (677)
|+|++|.......+++.
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999988887754
No 127
>PLN02789 farnesyltranstransferase
Probab=97.86 E-value=0.0015 Score=65.13 Aligned_cols=182 Identities=13% Similarity=0.107 Sum_probs=125.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccC-CHHHHHHH
Q 037537 313 EYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCG-NLEDARRL 391 (677)
Q Consensus 313 ~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g-~~~~A~~~ 391 (677)
+..++|+.+..++++ +.|+..| +++.....+.+.| +++++...
T Consensus 51 e~serAL~lt~~aI~--lnP~~yt----------------------------------aW~~R~~iL~~L~~~l~eeL~~ 94 (320)
T PLN02789 51 ERSPRALDLTADVIR--LNPGNYT----------------------------------VWHFRRLCLEALDADLEEELDF 94 (320)
T ss_pred CCCHHHHHHHHHHHH--HCchhHH----------------------------------HHHHHHHHHHHcchhHHHHHHH
Confidence 667778887777775 3455433 3344444445556 57889998
Q ss_pred HhcCCC---CCcchHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 037537 392 FDRMPE---HNTVSLNSMIAGYAQHGIG--MEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFG 466 (677)
Q Consensus 392 ~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 466 (677)
++++.+ ++..+|+-....+.+.|+. ++++++++++++.. +-|..+|..-..++.+.|+++++++.++.+.+. .
T Consensus 95 ~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d 172 (320)
T PLN02789 95 AEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D 172 (320)
T ss_pred HHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C
Confidence 887764 4556787666556666653 67899999999864 456788988888888999999999999999975 3
Q ss_pred CccChHHHHHHHHHHhhcC---Ch----HHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhc----CC
Q 037537 467 FEPEGEHYSCMIDLLGRAG---KL----TDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAAS----GK 535 (677)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g---~~----~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~----g~ 535 (677)
.-+...|+....++.+.| .. +++.++. .+.++++|+|.++|.-+..+|... ++
T Consensus 173 -~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~---------------~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 173 -VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT---------------IDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred -CCchhHHHHHHHHHHhccccccccccHHHHHHHH---------------HHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 234556666655554442 22 2333333 345788999999999999999874 34
Q ss_pred hHHHHHHHHHHHh
Q 037537 536 WEEVATIRRLMRD 548 (677)
Q Consensus 536 ~~~a~~~~~~m~~ 548 (677)
..+|.+...+..+
T Consensus 237 ~~~~~~~~~~~~~ 249 (320)
T PLN02789 237 DPEVSSVCLEVLS 249 (320)
T ss_pred chhHHHHHHHhhc
Confidence 4667777666444
No 128
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.001 Score=68.24 Aligned_cols=212 Identities=15% Similarity=0.107 Sum_probs=147.5
Q ss_pred HHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhCCChhHHHH
Q 037537 44 YSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLFDQIPQP---DLVSYNTLISAYADCGDTESALS 117 (677)
Q Consensus 44 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~ 117 (677)
+.+.|++.+|.-.|+..++ .+..+|-.|.-..+..++-..|+..+.+..+- |....-+|.-.|...|.-.+|+.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 3578888888888888877 44567888888888888888888888777653 45566667778888898899999
Q ss_pred HHHHhHhcCCC--------CCcccHHHHHHHhhcchh---hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 037537 118 LFKDMREKRFD--------TDGFTLSGLITASSNNLC---LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRV 186 (677)
Q Consensus 118 ~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~---~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 186 (677)
.|+.......+ ++..+-.. +....... ..+.+.+.....+...|+.+...|--.|--.|.++.|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88887543200 01000000 01111111 2334444555556567888888888888888999999999
Q ss_pred Hhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 037537 187 FYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-MYTLASILTAFTSLEDLVGGLQFHAHLIK 259 (677)
Q Consensus 187 f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 259 (677)
|+.. ...| |...||-|...++...+.++|+..|++.++ ++|+ ......|--+|...|.+++|...+-.++.
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9887 4445 667799999999999999999999999887 6676 33344455567888888888777655543
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.0011 Score=61.54 Aligned_cols=153 Identities=12% Similarity=0.010 Sum_probs=79.2
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcch
Q 037537 69 NVLLAAYARQLRIASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNL 145 (677)
Q Consensus 69 ~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 145 (677)
..+-..+.-.|+-+.+..+...... .|...-+..+....++|++.+|...|++.....
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~------------------- 130 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA------------------- 130 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-------------------
Confidence 3334444455555555555544332 233334445566666666666666666655421
Q ss_pred hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CC-CCCeeeHHHHHHHHHhCCCchHHHHHHHHHH
Q 037537 146 CLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GE-IKDEVSWNSMVVAYGQHREGLEALQLFQEMV 223 (677)
Q Consensus 146 ~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 223 (677)
++|...|+.+--.|.+.|++++|+.-|.+. .. ..+....|.|.-.|.-.|+.+.|..++....
T Consensus 131 ---------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 131 ---------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred ---------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444455555566666666666555554 11 1233445555555555666666666665555
Q ss_pred HCCCCCCHhHHHHHHHHHccCCChHHHHHHHHH
Q 037537 224 SLQLGLDMYTLASILTAFTSLEDLVGGLQFHAH 256 (677)
Q Consensus 224 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 256 (677)
..+. -|...-..+..+....|+++.|+.+-..
T Consensus 196 l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 196 LSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hCCC-CchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 4322 2444444455555566666666655443
No 130
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.82 E-value=2.4e-05 Score=47.75 Aligned_cols=31 Identities=45% Similarity=0.634 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNI 431 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 431 (677)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 131
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.81 E-value=2.4e-05 Score=47.73 Aligned_cols=31 Identities=48% Similarity=0.856 Sum_probs=27.9
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHhcCC
Q 037537 97 VSYNTLISAYADCGDTESALSLFKDMREKRF 127 (677)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 127 (677)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999998774
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.78 E-value=0.0019 Score=59.85 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=68.6
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSA 444 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 444 (677)
..+...++....+.|++..|...|.+... +|...|+.+..+|.+.|+.++|..-|.+..+ +.|+ ...++.+.-.
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms 177 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMS 177 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHH
Confidence 33444455555666666666666665543 3455666666666666666666666666655 2333 3445555555
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHH
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIE 495 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 495 (677)
+.-.|+.+.|..++...... -.-|..+-..+.-+.+..|++++|.++..
T Consensus 178 ~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 178 LLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 55566666666666655542 12244445555555566666666666554
No 133
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.78 E-value=0.00045 Score=63.97 Aligned_cols=112 Identities=9% Similarity=0.018 Sum_probs=87.7
Q ss_pred cCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCC--HHHHH
Q 037537 382 CGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC-AHTGK--VAEGQ 455 (677)
Q Consensus 382 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~--~~~a~ 455 (677)
.++.+++...++...+ .|...|..+...|...|++++|+..|++..+.. +.|...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4566677666666543 467789999999999999999999999998853 33466676766654 56676 58999
Q ss_pred HHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 456 KYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 456 ~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
++++...+. .| +...+..+...+.+.|++++|...++++
T Consensus 131 ~~l~~al~~---dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 131 EMIDKALAL---DANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHh---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999864 45 5778888888899999999999999987
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.77 E-value=0.008 Score=60.76 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMID 479 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 479 (677)
.+-.....+...|+.++|+..++.++.. .|| ..-.......+...++.++|.+.++.+... .|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHH
Confidence 3444445566789999999999999885 455 555556667788999999999999999864 676 556667889
Q ss_pred HHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 480 LLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+|.+.|++.+|..+++... .-+|+|+..|..|..+|...|+..++..-+.++-.
T Consensus 383 all~~g~~~eai~~L~~~~---------------~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYL---------------FNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHhcCChHHHHHHHHHHh---------------hcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999999999999998773 45688999999999999999999999998887654
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.76 E-value=0.00052 Score=69.75 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=100.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhc
Q 037537 405 SMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRA 484 (677)
Q Consensus 405 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 484 (677)
+|+..+...++++.|+++|+++.+.. |+.. ..++..+...++-.+|.+++++..+. .+-+......-.+.|.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 45566677889999999999999864 6643 44677777788889999999998864 333666777777889999
Q ss_pred CChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 485 GKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 485 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
++.+.|+++.+++ .++.|.+-.+|..|..+|...|++++|+..++.+-
T Consensus 248 ~~~~lAL~iAk~a---------------v~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKA---------------VELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHH---------------HHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999998877 47778889999999999999999999999988763
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.74 E-value=0.0016 Score=57.13 Aligned_cols=124 Identities=17% Similarity=0.217 Sum_probs=88.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccCh--HHHHHH
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETNIPPT---NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG--EHYSCM 477 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l 477 (677)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|.. .....|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 44455555 4778888888888888753 333 233344556777889999999999998876 322322 234456
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 037537 478 IDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRL 545 (677)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 545 (677)
...+...|++++|+..++..+.. |..+..+..++++|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~----------------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE----------------AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc----------------chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77888999999999999775422 22456788899999999999999998875
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.73 E-value=0.012 Score=65.91 Aligned_cols=118 Identities=9% Similarity=0.090 Sum_probs=74.2
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN-ITFVSVLSACAH 447 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 447 (677)
+.+.|.+...|+.. ++++|.+++.+. +.-|...+++.++.++|.++... .|+. ..|..+
T Consensus 150 ~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i------ 209 (906)
T PRK14720 150 PEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRI------ 209 (906)
T ss_pred HHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchHHHHH------
Confidence 66677777777777 888887776653 33366666777888888887774 3332 222222
Q ss_pred cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 448 TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
.+.+...-|..--+.++--+..-|-...+++++..+++.+ ++.+|.|..+..-|+
T Consensus 210 ----------~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i---------------L~~~~~n~~a~~~l~ 264 (906)
T PRK14720 210 ----------ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI---------------LEHDNKNNKAREELI 264 (906)
T ss_pred ----------HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH---------------HhcCCcchhhHHHHH
Confidence 2233222222233445555666677777788888887765 577777777777777
Q ss_pred HHHH
Q 037537 528 NIYA 531 (677)
Q Consensus 528 ~~y~ 531 (677)
..|.
T Consensus 265 ~~y~ 268 (906)
T PRK14720 265 RFYK 268 (906)
T ss_pred HHHH
Confidence 7765
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.70 E-value=0.13 Score=56.20 Aligned_cols=126 Identities=13% Similarity=0.129 Sum_probs=77.9
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH--HccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHH
Q 037537 10 VGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLY--SKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASA 84 (677)
Q Consensus 10 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 84 (677)
...++++.|++..+.+++.. |+ ..|..+++++ .+.|..++|..+++.... .|..+...+-..|-..+..++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 45567788888888877764 22 2334444444 477888888877765554 5667777888888888888888
Q ss_pred HHHhccCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHH
Q 037537 85 RQLFDQIPQ--PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLIT 139 (677)
Q Consensus 85 ~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 139 (677)
..++++..+ |+...-..+..+|++.+++.+-.+.--+|.+ .+.-+.+.|-++++
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~S 152 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVIS 152 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHH
Confidence 888888776 4433344555677777766554433333332 12234455544444
No 139
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.014 Score=59.61 Aligned_cols=360 Identities=15% Similarity=0.104 Sum_probs=190.3
Q ss_pred HHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCCChHH
Q 037537 173 CYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-MYTLASILTAFTSLEDLVG 249 (677)
Q Consensus 173 ~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~ 249 (677)
+....|+++.|...|.+. -.++|.+.|+.-..+|+..|++++|++=-.+-++ +.|+ ...|.-.-.++...|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 455679999999999876 2344888899999999999999999876666655 6677 4678888888889999999
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhC------C-CC------ChhhHHHHHhhhcccC----
Q 037537 250 GLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEI------P-QP------DLVLWNTMISGYSQKE---- 312 (677)
Q Consensus 250 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~------~-~~------~~~~~~~li~~~~~~~---- 312 (677)
|+.-|..-++.. +.+....+.|.+++.. -..+.+.|..- . .| ....|..++..+-++.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~----~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLE----DYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhH----HHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999998887764 5566778888888722 11222222210 0 00 1112333443332221
Q ss_pred -----CCHHHHHHHHHHH-----hhcCCCCCcchHHHHHHHhhccC--hhHHHHHHHHHHHhhcccCccchhHHHHHHHH
Q 037537 313 -----EYSDQALGCFKKL-----NRVGYHPDDCSFVCVISACSNLS--PSLGKQIHALTIKIEIRSNRISVNNALVAMYS 380 (677)
Q Consensus 313 -----~~~~~A~~l~~~m-----~~~g~~p~~~t~~~ll~a~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~ 380 (677)
.+...|...+... ...|..+...+-..- .-+-... ++.-.+.-. .+.+ ..-...+.++.-
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~d~~ee~~--~k~~-----a~~ek~lgnaay 235 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-KQEHNGFPIIEDNTEERR--VKEK-----AHKEKELGNAAY 235 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-cccCCCCCccchhHHHHH--HHHh-----hhHHHHHHHHHH
Confidence 1111222111110 001110000000000 0000000 000000000 0000 112234445555
Q ss_pred ccCCHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHhccCCH
Q 037537 381 KCGNLEDARRLFDRMPE--HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNI-------TFVSVLSACAHTGKV 451 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~~~~g~~ 451 (677)
+..+++.|.+-+....+ .++.-++....+|...|.+.+....-...++.|-. ... .+..+-.++.+.+++
T Consensus 236 kkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred HhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 55556666655554433 23333455555666666666655555555544411 111 122223344455666
Q ss_pred HHHHHHHHHhHHhcCCccChHHHH-------------------------HHHHHHhhcCChHHHHHHHHhC-CCCCChHH
Q 037537 452 AEGQKYFSMMKDMFGFEPEGEHYS-------------------------CMIDLLGRAGKLTDAERLIEAM-PFNPGSIA 505 (677)
Q Consensus 452 ~~a~~~~~~m~~~~~~~p~~~~~~-------------------------~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~ 505 (677)
+.+..+|...... ...|+...-. .=...+.+.|++..|...+.++ ...|+...
T Consensus 315 ~~ai~~~~kaLte-~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 315 EGAIKYYQKALTE-HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 6666666665554 2233322111 1123456778888888888876 23454443
Q ss_pred ------------------HHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 506 ------------------LKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 506 ------------------~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
..-++..++++|+....|.--..++....+|++|++.|++-.+.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33345566777777777777777777777777777777765543
No 140
>PLN02789 farnesyltranstransferase
Probab=97.65 E-value=0.0094 Score=59.49 Aligned_cols=202 Identities=11% Similarity=0.051 Sum_probs=131.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC-ChHHHHHHHhhccc---cChhHHHHHHHHHHhcCCh
Q 037537 6 LKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCG-CLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRI 81 (677)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 81 (677)
-......+..+.|+.+.+.+++.. |-+..+|+.--..+...| .++++...++.+.. .+..+|+...-.+.+.|+.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 344555678899999999999887 556667776666676777 67899999998887 4455677665555566653
Q ss_pred --hHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHH
Q 037537 82 --ASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAI 156 (677)
Q Consensus 82 --~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~ 156 (677)
+++...++.+.+ .|..+|+.....+.+.|+++++++.++++.+.+...+
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~-------------------------- 176 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN-------------------------- 176 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch--------------------------
Confidence 667777777664 5677888888888899999999999999988653221
Q ss_pred HhCCCCChhHHHHHHHHHHhc---CC----hhHHHHHHhhc-C-CCCCeeeHHHHHHHHHhC----CCchHHHHHHHHHH
Q 037537 157 YCGFDHYASVNNSLLTCYSRN---GF----LDEAKRVFYEM-G-EIKDEVSWNSMVVAYGQH----REGLEALQLFQEMV 223 (677)
Q Consensus 157 ~~g~~~~~~~~~~li~~~~~~---g~----~~~A~~~f~~m-~-~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~ 223 (677)
.+|+.....+.+. |. .+++.....+. . ...|..+|+-+...+... ++..+|.+.+.+..
T Consensus 177 --------sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 177 --------SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred --------hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 2222222122111 11 23344444333 2 234677788888888773 33456777777765
Q ss_pred HCCCCCCHhHHHHHHHHHcc
Q 037537 224 SLQLGLDMYTLASILTAFTS 243 (677)
Q Consensus 224 ~~g~~pd~~t~~~ll~a~~~ 243 (677)
..+ ..+...+..++..++.
T Consensus 249 ~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 249 SKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccc-CCcHHHHHHHHHHHHh
Confidence 532 1245556666666653
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.63 E-value=0.0072 Score=67.47 Aligned_cols=215 Identities=17% Similarity=0.202 Sum_probs=150.7
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCCeee-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC---------
Q 037537 162 HYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKDEVS-WNSMVVAYGQHREGLEALQLFQEMVSLQLGLD--------- 230 (677)
Q Consensus 162 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--------- 230 (677)
.+...+..|+..|...+++++|.++.+.. ...|+... |-.+...+.+.++..++..+ .+... ...+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~ 105 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHI 105 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHHH
Confidence 34667888999999999999999998866 34454443 33333456666666666555 33221 1122
Q ss_pred ----------HhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhh
Q 037537 231 ----------MYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVL 300 (677)
Q Consensus 231 ----------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~ 300 (677)
...+-.+..+|.+.|+.+++..+++.+++.. +.|+.+.|-+...|+.. + +++|.+++.+.
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d-L~KA~~m~~KA------- 175 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D-KEKAITYLKKA------- 175 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h-HHHHHHHHHHH-------
Confidence 2566677778888899999999999999988 77888999999999998 6 99999887765
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHh-hcccCccchhHHHHHHH
Q 037537 301 WNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKI-EIRSNRISVNNALVAMY 379 (677)
Q Consensus 301 ~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~li~~y 379 (677)
+..|... +++.++.+++.++... .|+.+.+-. .+...+..+ ++..- +.++-.|-..|
T Consensus 176 ----V~~~i~~-kq~~~~~e~W~k~~~~--~~~d~d~f~--------------~i~~ki~~~~~~~~~-~~~~~~l~~~y 233 (906)
T PRK14720 176 ----IYRFIKK-KQYVGIEEIWSKLVHY--NSDDFDFFL--------------RIERKVLGHREFTRL-VGLLEDLYEPY 233 (906)
T ss_pred ----HHHHHhh-hcchHHHHHHHHHHhc--CcccchHHH--------------HHHHHHHhhhccchh-HHHHHHHHHHH
Confidence 3336666 7888999999998874 455544421 112222221 22222 55566777888
Q ss_pred HccCCHHHHHHHHhcCCC---CCcchHHHHHHHHH
Q 037537 380 SKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYA 411 (677)
Q Consensus 380 ~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 411 (677)
-+..+++++..+|..+.+ .|.....-++.+|.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 899999999999998875 45566777787776
No 142
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.018 Score=53.55 Aligned_cols=172 Identities=18% Similarity=0.132 Sum_probs=102.7
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCC
Q 037537 254 HAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPD 333 (677)
Q Consensus 254 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~ 333 (677)
.+.+.......+......-...|.+.|+ .++|.+.......-.....|.- .+.+. .+.+-|.+.+++|++- -+
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~-~deAl~~~~~~~~lE~~Al~Vq--I~lk~-~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGD-FDEALKALHLGENLEAAALNVQ--ILLKM-HRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCC-hHHHHHHHhccchHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHcc---ch
Confidence 3333333333333333333445666566 7777777776443333333322 23344 5567777777777752 23
Q ss_pred cchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHH
Q 037537 334 DCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGY 410 (677)
Q Consensus 334 ~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 410 (677)
..|. ....++.+....-.+.+.+|.-+|++|.+ |+..+.|.+..++
T Consensus 169 d~tL-------------------------------tQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~ 217 (299)
T KOG3081|consen 169 DATL-------------------------------TQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCH 217 (299)
T ss_pred HHHH-------------------------------HHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHH
Confidence 3333 22334444444455678888888988876 4555667777888
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhHHh
Q 037537 411 AQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKV-AEGQKYFSMMKDM 464 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~ 464 (677)
...|++++|..++++.+... .-++.|+..++..-.+.|.. +-..+....++..
T Consensus 218 l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 88899999999998888764 44566777776666666654 3345566666543
No 143
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0093 Score=55.44 Aligned_cols=152 Identities=15% Similarity=0.116 Sum_probs=113.5
Q ss_pred HHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCC
Q 037537 375 LVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH----TGK 450 (677)
Q Consensus 375 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~ 450 (677)
-...|.+.|++++|.+.......-+....| +..+.+..+.+-|.+.+++|.+ -.+..|.+.|..++.+ .+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchh
Confidence 345688999999999999884333333322 3445677789999999999987 3456788877777653 457
Q ss_pred HHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHH
Q 037537 451 VAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIY 530 (677)
Q Consensus 451 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y 530 (677)
+..|.-+|++|.++ ..|+..+.+.+..+....|++++|..++++. +.-+|+++.+...++-.-
T Consensus 189 ~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea---------------L~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEA---------------LDKDAKDPETLANLIVLA 251 (299)
T ss_pred hhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHH---------------HhccCCCHHHHHHHHHHH
Confidence 89999999999874 6788888888888888999999999999987 344567777877777777
Q ss_pred HhcCChHHH-HHHHHHHHh
Q 037537 531 AASGKWEEV-ATIRRLMRD 548 (677)
Q Consensus 531 ~~~g~~~~a-~~~~~~m~~ 548 (677)
...|+-.++ .+...+.+.
T Consensus 252 ~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 252 LHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHhCCChHHHHHHHHHHHh
Confidence 777876555 345555444
No 144
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.53 E-value=0.0081 Score=66.32 Aligned_cols=138 Identities=11% Similarity=0.123 Sum_probs=93.7
Q ss_pred hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 298 LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 298 ~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
+..+-.|.....+. |.+++|..+++...+ +.||. ......+..
T Consensus 86 ~~~~~~La~i~~~~-g~~~ea~~~l~~~~~--~~Pd~----------------------------------~~a~~~~a~ 128 (694)
T PRK15179 86 ELFQVLVARALEAA-HRSDEGLAVWRGIHQ--RFPDS----------------------------------SEAFILMLR 128 (694)
T ss_pred HHHHHHHHHHHHHc-CCcHHHHHHHHHHHh--hCCCc----------------------------------HHHHHHHHH
Confidence 44455555555555 777888888777765 35554 444456667
Q ss_pred HHHccCCHHHHHHHHhcCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPEH---NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEG 454 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 454 (677)
.+.+.+++++|...+++.... +....+.+..++.+.|++++|.++|++....+ +-+..++..+..++-..|+.++|
T Consensus 129 ~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 129 GVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred HHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 777788888888888777653 33455666777788888888888888887732 33367777777788888888888
Q ss_pred HHHHHHhHHhcCCccChHHHH
Q 037537 455 QKYFSMMKDMFGFEPEGEHYS 475 (677)
Q Consensus 455 ~~~~~~m~~~~~~~p~~~~~~ 475 (677)
...|+...+. ..|...-|+
T Consensus 208 ~~~~~~a~~~--~~~~~~~~~ 226 (694)
T PRK15179 208 RDVLQAGLDA--IGDGARKLT 226 (694)
T ss_pred HHHHHHHHHh--hCcchHHHH
Confidence 8888887764 344444444
No 145
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.49 E-value=0.0022 Score=55.47 Aligned_cols=93 Identities=15% Similarity=0.228 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLL 481 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 481 (677)
....+...+.+.|++++|.+.|+.....+ +.+...+..+...+...|++++|..+++...+. .+.+...+..+...|
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 34455566677777777777777777643 345566666677777777777777777776643 223456666667777
Q ss_pred hhcCChHHHHHHHHhC
Q 037537 482 GRAGKLTDAERLIEAM 497 (677)
Q Consensus 482 ~~~g~~~~A~~~~~~m 497 (677)
...|++++|.+.+++.
T Consensus 96 ~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 96 LALGEPESALKALDLA 111 (135)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 7778888887777655
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.49 E-value=0.0021 Score=56.29 Aligned_cols=124 Identities=12% Similarity=0.100 Sum_probs=91.7
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCCCCcch-H-----HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHH
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPEHNTVS-L-----NSMIAGYAQHGIGMEALRLFEWMLETNIPPT--NITFVSV 441 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~-~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~l 441 (677)
..|..++..+. .++...+...++.+.+.+..+ | -.+...+...|++++|...|+........|+ ......+
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 45556666664 788888888888877533322 3 3345678889999999999999999762332 2345556
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 442 LSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
...+...|++++|+..++..... ......+....++|.+.|++++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77888999999999999775432 234556778899999999999999999763
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.43 E-value=0.00033 Score=54.78 Aligned_cols=82 Identities=22% Similarity=0.315 Sum_probs=48.4
Q ss_pred cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 448 TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
.|+++.|..+++.+.+.....|+...+-.+..+|.+.|++++|.+++++. +.+|.+......++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----------------~~~~~~~~~~~l~a 65 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----------------KLDPSNPDIHYLLA 65 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----------------THHHCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----------------CCCCCCHHHHHHHH
Confidence 35667777777777655111123344445677777777777777777662 22233445555667
Q ss_pred HHHHhcCChHHHHHHHHH
Q 037537 528 NIYAASGKWEEVATIRRL 545 (677)
Q Consensus 528 ~~y~~~g~~~~a~~~~~~ 545 (677)
.+|.+.|++++|++++++
T Consensus 66 ~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhc
Confidence 777777777777777664
No 148
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.35 E-value=0.0053 Score=53.04 Aligned_cols=95 Identities=8% Similarity=-0.021 Sum_probs=79.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhcc
Q 037537 437 TFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQL 515 (677)
Q Consensus 437 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l 515 (677)
.+-.+..-+...|++++|.++|+.+.. +.|. ..-|-.|.-++-..|++++|...+... +.+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A---------------~~L 98 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA---------------AQI 98 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------Hhc
Confidence 344455556789999999999999885 4664 556678888889999999999999876 578
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 516 EPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 516 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+|+|+.++..+...|...|+.+.|.+-|+.....
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999987653
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.31 E-value=0.0052 Score=51.54 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSC 476 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 476 (677)
++......+.+.|++++|.+.|+++.+.. |+ ...+..+..++...|++++|...|+.+...+.-.| ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 45556677778888888888888887642 32 23555677778888888888888888876522111 2455667
Q ss_pred HHHHHhhcCChHHHHHHHHhC
Q 037537 477 MIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m 497 (677)
+..++.+.|+.++|.+.++++
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHH
Confidence 777788888888888888766
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.26 E-value=0.0029 Score=50.11 Aligned_cols=90 Identities=21% Similarity=0.189 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHh
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLG 482 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 482 (677)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++...+. ...+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 3344455555555555555555555432 222233444444444444455555544444432 1112233444444444
Q ss_pred hcCChHHHHHHHH
Q 037537 483 RAGKLTDAERLIE 495 (677)
Q Consensus 483 ~~g~~~~A~~~~~ 495 (677)
..|+.++|...++
T Consensus 80 ~~~~~~~a~~~~~ 92 (100)
T cd00189 80 KLGKYEEALEAYE 92 (100)
T ss_pred HHHhHHHHHHHHH
Confidence 4444444444443
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.023 Score=52.55 Aligned_cols=161 Identities=17% Similarity=0.187 Sum_probs=111.7
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSM---IAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH 447 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 447 (677)
++..+.-+...+|+.+.|..+++.+..+=+-++-.. ..-+-..|++++|+++++..++.+ +.|.+++.-=+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 344445555567888888888887654222222211 112445788999999999998876 5567777766666666
Q ss_pred cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 448 TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
.|.--+|.+-+....+. +..|.+.|.-+.+.|...|+++.|.--++++ +-+.|.++..+..+.
T Consensus 133 ~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~---------------ll~~P~n~l~f~rla 195 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL---------------LLIQPFNPLYFQRLA 195 (289)
T ss_pred cCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH---------------HHcCCCcHHHHHHHH
Confidence 77777888777777764 6778899999999999999999999888887 345567777777888
Q ss_pred HHHHhcCC---hHHHHHHHHHHHhC
Q 037537 528 NIYAASGK---WEEVATIRRLMRDR 549 (677)
Q Consensus 528 ~~y~~~g~---~~~a~~~~~~m~~~ 549 (677)
..+...|. .+-|.+++.+..+.
T Consensus 196 e~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 196 EVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 87766554 34455666655443
No 152
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.22 E-value=0.0062 Score=48.75 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCCccChHH
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETNI-PPTNITFVSVLSACAHTG--------KVAEGQKYFSMMKDMFGFEPEGEH 473 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~ 473 (677)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+..+.. ++-+.+.+++.|... +++|+.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34566777777999999999999999999 899999999999877543 345678899999988 99999999
Q ss_pred HHHHHHHHhh
Q 037537 474 YSCMIDLLGR 483 (677)
Q Consensus 474 ~~~li~~~~~ 483 (677)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.0033 Score=59.51 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=71.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChH
Q 037537 410 YAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLT 488 (677)
Q Consensus 410 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 488 (677)
+.+.+++.+|+..|.+.++.. +-|.+-|..=..+|++.|.++.|.+-.+.... +.|. ...|..|..+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcHH
Confidence 456678888888888888742 33456666667778888888888777666653 4554 567888888888888888
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHH
Q 037537 489 DAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANI 529 (677)
Q Consensus 489 ~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~ 529 (677)
+|.+.|++. ++++|+|...+..|-.+
T Consensus 167 ~A~~aykKa---------------LeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 167 EAIEAYKKA---------------LELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHhh---------------hccCCCcHHHHHHHHHH
Confidence 888887765 57777777555444333
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.18 E-value=0.0052 Score=48.60 Aligned_cols=92 Identities=23% Similarity=0.291 Sum_probs=76.7
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH 447 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 447 (677)
++..+...+...|++++|...|+...+ .+...|..+...+...|++++|.+.|++..+.. +.+..++..+...+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 356678888999999999999998754 234678888999999999999999999998864 4445678888888999
Q ss_pred cCCHHHHHHHHHHhHH
Q 037537 448 TGKVAEGQKYFSMMKD 463 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~ 463 (677)
.|+.++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 9999999999988764
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.17 E-value=0.0066 Score=50.93 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 436 ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 436 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
.++..+...+...|++++|...|..+.+.+.-.| ....+..+..++.+.|++++|.+.++... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------------~ 67 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV---------------K 67 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH---------------H
Confidence 3556667778889999999999999987522111 13466678999999999999999999873 3
Q ss_pred cCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 515 LEPS---NAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 515 l~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
..|. .+.++..+..+|.+.|++++|.+.++++.+..
T Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 68 KYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 3333 35678999999999999999999999998764
No 156
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.13 E-value=0.0069 Score=54.90 Aligned_cols=117 Identities=12% Similarity=0.127 Sum_probs=86.4
Q ss_pred CCHhHHHHHHHHHc-----cCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHH
Q 037537 229 LDMYTLASILTAFT-----SLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNT 303 (677)
Q Consensus 229 pd~~t~~~ll~a~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~ 303 (677)
.|..+|..++..+. +.|..+-....+..|.+.|++.|..+|+.|++.+=| |. +- -..+ +-+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~-fv-p~n~-----------fQ~ 110 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GK-FV-PRNF-----------FQA 110 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CC-cc-cccH-----------HHH
Confidence 45666666666653 346777777888889999999999999999999887 54 11 1111 222
Q ss_pred HHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC--hhHHHHHHHHHHHh
Q 037537 304 MISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS--PSLGKQIHALTIKI 362 (677)
Q Consensus 304 li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~~~i~~~~~~~ 362 (677)
+-.-|- .+-+-|++++++|...|+.||..|+..+++.++..+ .....++.-++.+.
T Consensus 111 ~F~hyp---~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkf 168 (228)
T PF06239_consen 111 EFMHYP---RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKF 168 (228)
T ss_pred HhccCc---HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 222333 345789999999999999999999999999999888 77777777777663
No 157
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.18 Score=50.25 Aligned_cols=123 Identities=11% Similarity=0.175 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCC
Q 037537 166 VNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLE 245 (677)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~ 245 (677)
..+..|.-+...|+...|.++-.+. ..||..-|-..+.+++..+++++-..+... +-++.-|-..+.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F-kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF-KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 3445566667788889999998888 778888899999999999998876665332 223477888888888888
Q ss_pred ChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhh
Q 037537 246 DLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGY 308 (677)
Q Consensus 246 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~ 308 (677)
+..+|..+...+ .+..-+.+|.++|+ +.+|.+.--+ .+|......+...+
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~-~~~A~~~A~~--~kd~~~L~~i~~~~ 301 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGD-YKEAAQEAFK--EKDIDLLKQILKRC 301 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCC-HHHHHHHHHH--cCCHHHHHHHHHHC
Confidence 888888776551 22667888899988 8887665333 23444444443333
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.11 E-value=0.0098 Score=60.77 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=54.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcC
Q 037537 407 IAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAG 485 (677)
Q Consensus 407 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 485 (677)
...+...|++++|+++|++.++.. +-+...|..+..++...|++++|...++.+.+. .| +...|..+..+|.+.|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhC
Confidence 344556677777777777776643 333555666666666677777777777666643 34 3455666666666777
Q ss_pred ChHHHHHHHHhC
Q 037537 486 KLTDAERLIEAM 497 (677)
Q Consensus 486 ~~~~A~~~~~~m 497 (677)
++++|...|++.
T Consensus 85 ~~~eA~~~~~~a 96 (356)
T PLN03088 85 EYQTAKAALEKG 96 (356)
T ss_pred CHHHHHHHHHHH
Confidence 777777766655
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.09 E-value=0.01 Score=60.57 Aligned_cols=96 Identities=11% Similarity=0.096 Sum_probs=79.7
Q ss_pred HHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 037537 375 LVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKV 451 (677)
Q Consensus 375 li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 451 (677)
....+...|++++|...|++..+ .+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 35667788999999999998865 356678888999999999999999999999853 33577888888999999999
Q ss_pred HHHHHHHHHhHHhcCCccChHHH
Q 037537 452 AEGQKYFSMMKDMFGFEPEGEHY 474 (677)
Q Consensus 452 ~~a~~~~~~m~~~~~~~p~~~~~ 474 (677)
++|...|+...+. .|+....
T Consensus 87 ~eA~~~~~~al~l---~P~~~~~ 106 (356)
T PLN03088 87 QTAKAALEKGASL---APGDSRF 106 (356)
T ss_pred HHHHHHHHHHHHh---CCCCHHH
Confidence 9999999999864 5654433
No 160
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.09 E-value=0.23 Score=52.49 Aligned_cols=57 Identities=7% Similarity=0.170 Sum_probs=34.0
Q ss_pred CCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHH
Q 037537 262 FHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKL 325 (677)
Q Consensus 262 ~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m 325 (677)
++.+....-.+.+|+...|. -++|.+.|-+-..|. +.+..|... +++.+|.++-++.
T Consensus 848 Lpe~s~llp~~a~mf~svGM-C~qAV~a~Lr~s~pk-----aAv~tCv~L-nQW~~avelaq~~ 904 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGM-CDQAVEAYLRRSLPK-----AAVHTCVEL-NQWGEAVELAQRF 904 (1189)
T ss_pred cCcccchHHHHHHHHHhhch-HHHHHHHHHhccCcH-----HHHHHHHHH-HHHHHHHHHHHhc
Confidence 35566666667777777777 777766665544432 234445555 6666666665544
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.08 E-value=0.039 Score=54.48 Aligned_cols=127 Identities=12% Similarity=0.168 Sum_probs=63.1
Q ss_pred HHHHhc-CChhHHHHHHhhc-----C-CCC--CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-----CHh-HHHH
Q 037537 172 TCYSRN-GFLDEAKRVFYEM-----G-EIK--DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGL-----DMY-TLAS 236 (677)
Q Consensus 172 ~~~~~~-g~~~~A~~~f~~m-----~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----d~~-t~~~ 236 (677)
..|-.. |++++|.+.|++. . ..+ -...+..+...+.+.|++++|+++|++....-... +.. .|..
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 445555 5666666666554 0 111 11234556677788888888888888876543221 111 1222
Q ss_pred HHHHHccCCChHHHHHHHHHHHHh--CCCCc--hhhHHHHHHHHHHcC-CCHHHHHHHHhhCCCCCh
Q 037537 237 ILTAFTSLEDLVGGLQFHAHLIKS--GFHQN--SHIGSGLIDLYAKCS-GDMRDCMKVFEEIPQPDL 298 (677)
Q Consensus 237 ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~--~~~~~~li~~y~~~g-~~~~~A~~~f~~~~~~~~ 298 (677)
.+-++...||+..|.+.++..... ++..+ ..+...|+.+|-... ..+.++..-|+.+.+.|.
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 333445567777777777766543 23222 234455566655421 125566666666655443
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.06 E-value=0.0014 Score=48.20 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=50.7
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 477 MIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+...+.+.|++++|.+.|++. ++..|+++..|..+..++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~---------------l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQA---------------LKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHH---------------HCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH---------------HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456788999999999999977 5777889999999999999999999999999998764
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.05 E-value=0.023 Score=51.27 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=79.5
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT--NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSC 476 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 476 (677)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|...++...+. .|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 44677778888888999999999999887532222 347778888888999999999999888754 343 455566
Q ss_pred HHHHHh-------hcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCC
Q 037537 477 MIDLLG-------RAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSN 519 (677)
Q Consensus 477 li~~~~-------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~ 519 (677)
+...|. +.|++++|...+++. ....+++++.+|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a--------~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA--------AEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH--------HHHHHHHHHhCccc
Confidence 666666 888999888888765 23455667777754
No 164
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.02 E-value=0.0014 Score=48.82 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 037537 470 EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASG-KWEEVATIRRLMRD 548 (677)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 548 (677)
+...|..+...+.+.|++++|+..|++. ++++|+++..|..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a---------------i~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKA---------------IELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHH---------------HHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567888899999999999999999876 6889999999999999999999 79999999988765
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.00 E-value=0.023 Score=51.38 Aligned_cols=122 Identities=17% Similarity=0.255 Sum_probs=77.5
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT--NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSC 476 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 476 (677)
...+..+...+...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...++...+. .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 34566677777778888888888888876432222 356777777778888888888888887753 34 3445555
Q ss_pred HHHHHhhcCC-------hHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 037537 477 MIDLLGRAGK-------LTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGK 535 (677)
Q Consensus 477 li~~~~~~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~ 535 (677)
+..+|...|+ .++|...+++. ....+++++++|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A--------~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKA--------AEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHH--------HHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666554 44444444332 33445566777765 6666666665554
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.00 E-value=0.0045 Score=60.92 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=97.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc-cCChHHHHHHHhhccc---cChhHHHHHHHHHHh
Q 037537 2 FRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSK-CGCLSAAHHAFNQTQH---ANVFSFNVLLAAYAR 77 (677)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 77 (677)
|..+++.+-|.+..+.|+.+|.+..+.+ ..+..+|.....+--+ .++.+.|..+|+...+ .+...|..-++.+.+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 7788889999999999999999999765 3334444444444233 5677779999999998 777889999999999
Q ss_pred cCChhHHHHHhccCCC--CC----cchHHHHHHHHHhCCChhHHHHHHHHhHhc
Q 037537 78 QLRIASARQLFDQIPQ--PD----LVSYNTLISAYADCGDTESALSLFKDMREK 125 (677)
Q Consensus 78 ~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 125 (677)
.|+.+.|+.+|+.... +. ...|...+..=.+.|+++.+.++.+++.+.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999998765 22 347999999999999999999999999874
No 167
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.98 E-value=0.0057 Score=48.96 Aligned_cols=78 Identities=10% Similarity=0.057 Sum_probs=60.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCC-CCCHhHHHHHHHHHccCC--------ChHHHHHHHHHHHHhCCCCchhhHHH
Q 037537 201 SMVVAYGQHREGLEALQLFQEMVSLQL-GLDMYTLASILTAFTSLE--------DLVGGLQFHAHLIKSGFHQNSHIGSG 271 (677)
Q Consensus 201 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~~ 271 (677)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|+..++.|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 445566666888888888888888888 888889988888876542 23456677888888888888888888
Q ss_pred HHHHHHH
Q 037537 272 LIDLYAK 278 (677)
Q Consensus 272 li~~y~~ 278 (677)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8887776
No 168
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.98 E-value=0.52 Score=50.01 Aligned_cols=84 Identities=20% Similarity=0.078 Sum_probs=39.0
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHhhccc-cChhHHHHHHHH----------HHhcCChhHHHHHhccCCCCCcchH
Q 037537 31 PFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH-ANVFSFNVLLAA----------YARQLRIASARQLFDQIPQPDLVSY 99 (677)
Q Consensus 31 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~----------~~~~g~~~~A~~~f~~m~~~~~~~~ 99 (677)
.|.+..|..|.....+.-.++.|+..|-+... +.+...-.|-.. -+-.|++++|.+++-.|.++|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLA-- 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLA-- 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhh--
Confidence 35556666555555555555555555544433 111111111111 11135666666666655555533
Q ss_pred HHHHHHHHhCCChhHHHHHH
Q 037537 100 NTLISAYADCGDTESALSLF 119 (677)
Q Consensus 100 ~~li~~~~~~g~~~~A~~~~ 119 (677)
|..+.+.|++-...+++
T Consensus 767 ---ielr~klgDwfrV~qL~ 783 (1189)
T KOG2041|consen 767 ---IELRKKLGDWFRVYQLI 783 (1189)
T ss_pred ---HHHHHhhhhHHHHHHHH
Confidence 44445555555554444
No 169
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.97 E-value=0.0098 Score=60.95 Aligned_cols=116 Identities=11% Similarity=0.115 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHhhcCCCCC-----eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHH
Q 037537 164 ASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKD-----EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASIL 238 (677)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 238 (677)
......+++......+++++..++-+....|+ ..|..++|+.|.+.|..++++++++.=...|+=||.+|++.+|
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 33345556666666777888888777722221 2345699999999999999999999999999999999999999
Q ss_pred HHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHc
Q 037537 239 TAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKC 279 (677)
Q Consensus 239 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 279 (677)
..+.+.|++..|.++...|...+.-.+..++.--+..+.++
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999998888766666666666666664
No 170
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.96 E-value=0.00071 Score=41.96 Aligned_cols=32 Identities=38% Similarity=0.625 Sum_probs=29.9
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCChHHHH
Q 037537 509 ANHFLQLEPSNAVPYVMLANIYAASGKWEEVA 540 (677)
Q Consensus 509 ~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 540 (677)
.+++++++|+|+.+|..|..+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 46789999999999999999999999999986
No 171
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.93 E-value=0.0069 Score=62.02 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCCCCChhH
Q 037537 100 NTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGFDHYASV 166 (677)
Q Consensus 100 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~~~~~~ 166 (677)
.++|+.|.+.|..++++.+++.=...|+-||.+|++.++..+.+.++ .+.++...|...+...+..+
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t 175 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPST 175 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchH
Confidence 34444444444445554444444444444555555555544444444 33344434433333333333
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.93 E-value=0.66 Score=48.84 Aligned_cols=140 Identities=13% Similarity=0.126 Sum_probs=82.2
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 453 (677)
+-..|+...|+.++|..+.- .+|-.+-++++-+++- ..+..+...+..-+-+...+.-
T Consensus 708 aAAEmLiSaGe~~KAi~i~~------------------d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEICG------------------DHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred HHHHHhhcccchhhhhhhhh------------------cccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccch
Confidence 44556666777777665542 2333344444433332 2234455555555556667777
Q ss_pred HHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCC-CCChHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 037537 454 GQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPF-NPGSIALKAANHFLQLEPSNAVPYVMLANIYAA 532 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~ 532 (677)
|-++|.+|-.. .+++++....|+|.+|..+-++.|. .|+... .-++-+-+- .-+.---.+|-+
T Consensus 766 AaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~-pyaqwLAE~-----DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 766 AAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYM-PYAQWLAEN-----DRFEEAQKAFHK 829 (1081)
T ss_pred HHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccccc-hHHHHhhhh-----hhHHHHHHHHHH
Confidence 88888877432 4567888888899999888888763 222211 011111111 124445577888
Q ss_pred cCChHHHHHHHHHHHhCCC
Q 037537 533 SGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 533 ~g~~~~a~~~~~~m~~~g~ 551 (677)
+|+-.||.++++++....+
T Consensus 830 AGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 830 AGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hcchHHHHHHHHHhhhhhh
Confidence 8999999999888865544
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.93 E-value=0.015 Score=52.72 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC--hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHh
Q 037537 436 ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE--GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFL 513 (677)
Q Consensus 436 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 513 (677)
..+..+...+...|++++|...|+...+. ...+. ...+..+..+|.+.|++++|.+.+++. +
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------l 99 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA---------------L 99 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------H
Confidence 45677777888999999999999999865 22221 457888899999999999999998876 4
Q ss_pred ccCCCCchhHHHHHHHHHhcCC--------------hHHHHHHHHHHHh
Q 037537 514 QLEPSNAVPYVMLANIYAASGK--------------WEEVATIRRLMRD 548 (677)
Q Consensus 514 ~l~p~~~~~~~~l~~~y~~~g~--------------~~~a~~~~~~m~~ 548 (677)
+..|.+...+..+..+|...|+ +++|.+++++...
T Consensus 100 ~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 100 ELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 6678888889999999988887 4566666666554
No 174
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.26 Score=45.88 Aligned_cols=179 Identities=13% Similarity=0.147 Sum_probs=120.4
Q ss_pred CCHHHHHHHHHHHhh---cC-CCCCcchH-HHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHH
Q 037537 313 EYSDQALGCFKKLNR---VG-YHPDDCSF-VCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLE 386 (677)
Q Consensus 313 ~~~~~A~~l~~~m~~---~g-~~p~~~t~-~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 386 (677)
.++++.++++.+|.. .| ..|+..+. --++-+.-..+ .+.+......+...- +.+ ..+.---.-.+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S-~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGS-KRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCC-hhHHHHHHHHHHHhhchh
Confidence 456777777776653 23 44554432 23333333444 555655555544432 222 333333333355679999
Q ss_pred HHHHHHhcCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 387 DARRLFDRMPEH---NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 387 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
+|.++++.+.+. |.+++-.=+...-..|+.-+|++-+....+. +..|...|.-+-..|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999998864 4566777777777889999999999998886 688999999999999999999999999999984
Q ss_pred hcCCccChH-HHHHHHHHHhhcC---ChHHHHHHHHhC
Q 037537 464 MFGFEPEGE-HYSCMIDLLGRAG---KLTDAERLIEAM 497 (677)
Q Consensus 464 ~~~~~p~~~-~~~~li~~~~~~g---~~~~A~~~~~~m 497 (677)
+.|... .+..+.+.+--.| +.+-|.+++.+.
T Consensus 183 ---~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 183 ---IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred ---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 577544 4456666654444 455666666654
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.85 E-value=0.016 Score=56.98 Aligned_cols=131 Identities=12% Similarity=0.104 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSA-CAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL 480 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 480 (677)
+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 45556666666666666666666665432 2223333333333 22245555566666666664 33345556666666
Q ss_pred HhhcCChHHHHHHHHhCCCC-CChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 481 LGRAGKLTDAERLIEAMPFN-PGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+.+.|+.+.|..+|++.... +... .....|...+.-=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~-------------~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEK-------------QSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHH-------------HCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchh-------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666655321 1100 0123566666666666666666666666654
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.84 E-value=0.003 Score=49.25 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=57.5
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHH
Q 037537 413 HGIGMEALRLFEWMLETNIP-PTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDA 490 (677)
Q Consensus 413 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 490 (677)
+|+++.|+.+|+++.+..-. |+...+..+..++.+.|++++|..+++. . ...|+ ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 67889999999999885421 2444555578888999999999999988 2 23343 24444557888999999999
Q ss_pred HHHHHh
Q 037537 491 ERLIEA 496 (677)
Q Consensus 491 ~~~~~~ 496 (677)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998875
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.82 E-value=0.018 Score=49.78 Aligned_cols=98 Identities=9% Similarity=-0.042 Sum_probs=78.7
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH 447 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 447 (677)
..-++..-+...|++++|.++|+.+.. .+..-|-.|..++...|++++|+..|....... +-|+..+-.+-.++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334555666788999999999987764 356678889999999999999999999998865 3457788888888999
Q ss_pred cCCHHHHHHHHHHhHHhcCCcc
Q 037537 448 TGKVAEGQKYFSMMKDMFGFEP 469 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~~~p 469 (677)
.|+.+.|++.|+..+...+-.|
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccCh
Confidence 9999999999998887644333
No 178
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.054 Score=50.33 Aligned_cols=178 Identities=12% Similarity=0.069 Sum_probs=122.5
Q ss_pred HHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--CC--------cchHHHHHHHHHHcCChHHHHH
Q 037537 352 GKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--HN--------TVSLNSMIAGYAQHGIGMEALR 421 (677)
Q Consensus 352 ~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~g~~~~A~~ 421 (677)
.+.+|+.+...- ..-+++|+..|.-..-+++-...|+.-.. .. ...-+.++..+.-+|.+.-.+.
T Consensus 124 mR~lhAe~~~~l-----gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d 198 (366)
T KOG2796|consen 124 MRILHAELQQYL-----GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVD 198 (366)
T ss_pred HHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHH
Confidence 344555544422 22346676666655555555555554332 12 2234567777777888888999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHH-----HHHHhhcCChHHHHHHHHh
Q 037537 422 LFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCM-----IDLLGRAGKLTDAERLIEA 496 (677)
Q Consensus 422 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~ 496 (677)
++++.++..-+-++.-...+.+.-.+.|+.+.|..+|+...+. .-..+....+.+ ...|.-+.++.+|...+++
T Consensus 199 ~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~ 277 (366)
T KOG2796|consen 199 AYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE 277 (366)
T ss_pred HHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhh
Confidence 9999999765666777888888888999999999999977765 223333333333 3456667888889888888
Q ss_pred CCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 497 MPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 497 m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
++ +.+|.++..-+.-.-+..-.|+..+|++....|++.-
T Consensus 278 i~---------------~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 278 IL---------------RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred cc---------------ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 85 5667777777766666667899999999999998753
No 179
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.76 E-value=0.012 Score=53.44 Aligned_cols=98 Identities=14% Similarity=0.226 Sum_probs=80.2
Q ss_pred HHHHhcC--CCCCcchHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 037537 389 RRLFDRM--PEHNTVSLNSMIAGYAQH-----GIGMEALRLFEWMLETNIPPTNITFVSVLSACAHT------------- 448 (677)
Q Consensus 389 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 448 (677)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4556665 457778888888888754 67777788899999999999999999999876542
Q ss_pred ---CCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCCh
Q 037537 449 ---GKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKL 487 (677)
Q Consensus 449 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 487 (677)
...+-|..+++.|... |+.||.+++..+++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccHH
Confidence 2356789999999886 9999999999999999988763
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.67 E-value=0.054 Score=57.98 Aligned_cols=137 Identities=16% Similarity=0.089 Sum_probs=94.6
Q ss_pred CCCCcchHHHHHHHHHHcC-----ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc--------CCHHHHHHHHHHh
Q 037537 396 PEHNTVSLNSMIAGYAQHG-----IGMEALRLFEWMLETNIPPT-NITFVSVLSACAHT--------GKVAEGQKYFSMM 461 (677)
Q Consensus 396 ~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~--------g~~~~a~~~~~~m 461 (677)
...|...|...+.|..... ....|..+|++.++ ..|| ...+..+..++... .++..+.+..+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3457788888888865432 26689999999998 4677 34444433322211 1233444444443
Q ss_pred HHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHH
Q 037537 462 KDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVAT 541 (677)
Q Consensus 462 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 541 (677)
........+...|..+.-.+...|++++|...++++ ++++| +..+|..++..|...|+.++|.+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rA---------------l~L~p-s~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKA---------------IDLEM-SWLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHH---------------HHcCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 332112335577877766677789999999999887 47777 57899999999999999999999
Q ss_pred HHHHHHhCC
Q 037537 542 IRRLMRDRG 550 (677)
Q Consensus 542 ~~~~m~~~g 550 (677)
.+++.....
T Consensus 475 ~~~~A~~L~ 483 (517)
T PRK10153 475 AYSTAFNLR 483 (517)
T ss_pred HHHHHHhcC
Confidence 999887654
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.64 E-value=0.021 Score=51.49 Aligned_cols=96 Identities=15% Similarity=0.060 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc--ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHH
Q 037537 435 NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP--EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHF 512 (677)
Q Consensus 435 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 512 (677)
...+..+...+...|++++|...|+..... ...| ...++..+..+|.+.|++++|.+.+++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A--------------- 98 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA--------------- 98 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------
Confidence 345666667777889999999999999864 2122 2357888899999999999999999876
Q ss_pred hccCCCCchhHHHHHHHHH-------hcCChHHHHHHHHHH
Q 037537 513 LQLEPSNAVPYVMLANIYA-------ASGKWEEVATIRRLM 546 (677)
Q Consensus 513 ~~l~p~~~~~~~~l~~~y~-------~~g~~~~a~~~~~~m 546 (677)
++++|.+..++..+..+|. ..|++++|...+++.
T Consensus 99 l~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 99 LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 3556777788888888888 888888776666544
No 182
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.61 E-value=0.0051 Score=46.40 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=51.8
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 479 DLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
..|.+.+++++|.+.++.+ ++++|+++..|.....+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~---------------l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERA---------------LELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHH---------------HHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 5688999999999999987 57889999999999999999999999999999988654
No 183
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.033 Score=53.24 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcC---ChHHHHHHHHhCCCCCChHHHHH
Q 037537 432 PPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAG---KLTDAERLIEAMPFNPGSIALKA 508 (677)
Q Consensus 432 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~ 508 (677)
+-|...|..|-.+|...|+.+.|..-|....+. -.++...+..+..++..+. ...++.++|+++
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a----------- 219 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQA----------- 219 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH-----------
Confidence 556788999999999999999999999888764 2234566666666554332 344555555544
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037537 509 ANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 509 ~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 551 (677)
+.++|.|..+...|...+...|++.+|...|+.|.+..-
T Consensus 220 ----l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 220 ----LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred ----HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999999999999998763
No 184
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.55 E-value=0.99 Score=45.09 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC
Q 037537 270 SGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS 348 (677)
Q Consensus 270 ~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 348 (677)
+..+.-+...|. ...|.++-.+..-|+-.-|-..|.+++.. ++|++-..+... +-.++-|-.++.+|-..|
T Consensus 181 ~~Ti~~li~~~~-~k~A~kl~k~Fkv~dkrfw~lki~aLa~~-~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 181 NDTIRKLIEMGQ-EKQAEKLKKEFKVPDKRFWWLKIKALAEN-KDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 333455556677 88888888888888888888888888888 888866654321 222345555555554444
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.55 E-value=0.06 Score=44.82 Aligned_cols=92 Identities=13% Similarity=0.128 Sum_probs=68.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHh
Q 037537 406 MIAGYAQHGIGMEALRLFEWMLETNIPPT--NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLG 482 (677)
Q Consensus 406 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 482 (677)
+..++-..|+.++|+.+|++....|.... ...+..+-+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45677788999999999999999886655 35677788889999999999999999887621111 1222233445778
Q ss_pred hcCChHHHHHHHHhC
Q 037537 483 RAGKLTDAERLIEAM 497 (677)
Q Consensus 483 ~~g~~~~A~~~~~~m 497 (677)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 899999999887543
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.50 E-value=0.012 Score=43.63 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=26.5
Q ss_pred ccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 447 HTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..|++++|.++|+.+... .| +...+..+..+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566666666665543 23 4445555666666666666666666655
No 187
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.41 E-value=1.3 Score=44.92 Aligned_cols=424 Identities=12% Similarity=0.119 Sum_probs=206.6
Q ss_pred HccCChHHHHHHHhhccc---cC------hhHHHHHHHHHHhcCChhHHHHHhccCCCC-CcchHHHHHHHH--HhCCCh
Q 037537 45 SKCGCLSAAHHAFNQTQH---AN------VFSFNVLLAAYARQLRIASARQLFDQIPQP-DLVSYNTLISAY--ADCGDT 112 (677)
Q Consensus 45 ~~~g~~~~a~~~~~~~~~---~~------~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~--~~~g~~ 112 (677)
.+++++.+|..+|.++.+ .+ ....+.++++|-.. +++.....+....+. ....|-.+..++ -+.+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 467788888888887776 22 23345677777543 344444444333331 134465555543 467889
Q ss_pred hHHHHHHHHhHhc--CCCCCcc--cHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHh
Q 037537 113 ESALSLFKDMREK--RFDTDGF--TLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFY 188 (677)
Q Consensus 113 ~~A~~~~~~m~~~--g~~p~~~--t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 188 (677)
.+|++.+..-.+. +.+|.-. -+.-+ -+|-..-+..++.+...|++.+++.+++
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l-----------------------~~df~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQL-----------------------FSDFFLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHH-----------------------hhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 9999888777654 3222100 00000 1223333555666667777777777777
Q ss_pred hc-------CCCCCeeeHHHHHHHHHhC--------CC-------chHHHHHHHHHHHC------CCCCCHhHHHHHHHH
Q 037537 189 EM-------GEIKDEVSWNSMVVAYGQH--------RE-------GLEALQLFQEMVSL------QLGLDMYTLASILTA 240 (677)
Q Consensus 189 ~m-------~~~~~~~~~~~li~~~~~~--------g~-------~~~A~~~~~~m~~~------g~~pd~~t~~~ll~a 240 (677)
++ ...-++.+||.++-.+.++ .. ++-++-...+|... .+.|...-+..++..
T Consensus 153 ~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqh 232 (549)
T PF07079_consen 153 RIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQH 232 (549)
T ss_pred HHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHH
Confidence 66 1123555566533333221 11 11222222233221 133444444444443
Q ss_pred HccC--CChHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHcCCCHHHHHHHHhhCC--------CCChhhHHHHHhhhc
Q 037537 241 FTSL--EDLVGGLQFHAHLIKSGFHQNSH-IGSGLIDLYAKCSGDMRDCMKVFEEIP--------QPDLVLWNTMISGYS 309 (677)
Q Consensus 241 ~~~~--~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~~A~~~f~~~~--------~~~~~~~~~li~~~~ 309 (677)
..-. ..+.--.+++......-+.|+.. +...|+.-+.+ + .+++..+-+.+. +.=+.++..++...+
T Consensus 233 lfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~-~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~V 309 (549)
T PF07079_consen 233 LFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--D-PEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKV 309 (549)
T ss_pred HHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--C-hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3221 23333444444444444455432 44455555554 2 444444433321 233345666666666
Q ss_pred ccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHcc----CCH
Q 037537 310 QKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKC----GNL 385 (677)
Q Consensus 310 ~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~----g~~ 385 (677)
+. ++..+|-+.+.-+.- +.|+.. +. ... ...-.+|.++.+.- -++
T Consensus 310 k~-~~T~~a~q~l~lL~~--ldp~~s-vs------------------~Kl---------lls~~~lq~Iv~~DD~~~Tkl 358 (549)
T PF07079_consen 310 KQ-VQTEEAKQYLALLKI--LDPRIS-VS------------------EKL---------LLSPKVLQDIVCEDDESYTKL 358 (549)
T ss_pred HH-HhHHHHHHHHHHHHh--cCCcch-hh------------------hhh---------hcCHHHHHHHHhcchHHHHHH
Confidence 66 666666665554443 233321 10 000 00011222222210 011
Q ss_pred HHHHHHHhcCCCCCcch---HHHHH---HHHHHcCC-hHHHHHHHHHHHHCCCCCC-HHH----HHHHHHHHhc---cCC
Q 037537 386 EDARRLFDRMPEHNTVS---LNSMI---AGYAQHGI-GMEALRLFEWMLETNIPPT-NIT----FVSVLSACAH---TGK 450 (677)
Q Consensus 386 ~~A~~~~~~~~~~~~~~---~~~li---~~~~~~g~-~~~A~~l~~~m~~~g~~p~-~~t----~~~ll~a~~~---~g~ 450 (677)
.+=..+++.....|+.. -.-|+ .-+-+.|. -++|+++++..++ +.|. ... +..+=.+|.+ ...
T Consensus 359 r~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~ 436 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHA 436 (549)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 22223333333333221 11122 22444555 6788888888887 3443 222 2222223322 233
Q ss_pred HHHHHHHHHHhHHhcCCccC----hHHHHHHHHH--HhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHH
Q 037537 451 VAEGQKYFSMMKDMFGFEPE----GEHYSCMIDL--LGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYV 524 (677)
Q Consensus 451 ~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~ 524 (677)
+.+-..+-+-+.+. |+.|- .+.-|+|.|+ +-..|++.++.-.-.- +.++.| ++.+|.
T Consensus 437 ~~rLlkLe~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W---------------L~~iaP-S~~~~R 499 (549)
T PF07079_consen 437 IPRLLKLEDFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW---------------LTKIAP-SPQAYR 499 (549)
T ss_pred HHHHHHHHHHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH---------------HHHhCC-cHHHHH
Confidence 44444444444444 88774 3455666554 4456777666544332 235566 778899
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 037537 525 MLANIYAASGKWEEVATIRRL 545 (677)
Q Consensus 525 ~l~~~y~~~g~~~~a~~~~~~ 545 (677)
.++-......++++|..++..
T Consensus 500 LlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 500 LLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHhhHHHHHHHHHh
Confidence 999999999999999999876
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.36 E-value=0.015 Score=43.01 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=48.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHH
Q 037537 411 AQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCM 477 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 477 (677)
.+.|++++|+++|+++.+.. +-|......+..++.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence 46788999999999998853 335677778888999999999999999998865 6664444433
No 189
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=2 Score=46.34 Aligned_cols=298 Identities=14% Similarity=0.040 Sum_probs=165.8
Q ss_pred hhHHHHHHHHHHhcCC---hhHHHHHHhhcCCC--CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCC----CCCHhHH
Q 037537 164 ASVNNSLLTCYSRNGF---LDEAKRVFYEMGEI--KDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQL----GLDMYTL 234 (677)
Q Consensus 164 ~~~~~~li~~~~~~g~---~~~A~~~f~~m~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~pd~~t~ 234 (677)
..++.....-+.+..+ -+-+.++=+++ .. ...++|..+.+-..+.|+.+-|..+++.=...+- -.+..-+
T Consensus 471 ~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kl-s~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~ 549 (829)
T KOG2280|consen 471 DRVLLEWARRKIKQSDKMDEEVLDKIDEKL-SAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDS 549 (829)
T ss_pred cHHHHHHHHHHHhccCccchHHHHHHHHHh-cccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchH
Confidence 4566666666666532 23334444444 22 4667888888888888999888887754322221 1133345
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC-CChhhHHHHHhhhcccCC
Q 037537 235 ASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ-PDLVLWNTMISGYSQKEE 313 (677)
Q Consensus 235 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~~~ 313 (677)
...+.-+...|+.+...+++-++.+.- +...+ .+-. .+ ...|..++.+... .|..+ +-..|- . +
T Consensus 550 ~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l----~~~l--~~-~p~a~~lY~~~~r~~~~~~---l~d~y~-q-~ 614 (829)
T KOG2280|consen 550 SLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL----FMTL--RN-QPLALSLYRQFMRHQDRAT---LYDFYN-Q-D 614 (829)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH----HHHH--Hh-chhhhHHHHHHHHhhchhh---hhhhhh-c-c
Confidence 556666777777777777666655431 00000 0000 11 3334444443321 11110 111111 1 2
Q ss_pred CHHHHHHHHHHH------hhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHH---H--------HHhhcccCccchhHHH
Q 037537 314 YSDQALGCFKKL------NRVGYHPDDCSFVCVISACSNLS-PSLGKQIHAL---T--------IKIEIRSNRISVNNAL 375 (677)
Q Consensus 314 ~~~~A~~l~~~m------~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~---~--------~~~~~~~~~~~~~~~l 375 (677)
+..+++.-|..= ...|..|+. ...-++|++.. ...+.+..+. . .+.|.... --..+--
T Consensus 615 dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~-dlSl~dT 690 (829)
T KOG2280|consen 615 DNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFV-DLSLHDT 690 (829)
T ss_pred cchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccc-cCcHHHH
Confidence 222222222110 012333332 22333444433 2211111111 1 11122122 1222344
Q ss_pred HHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037537 376 VAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQ 455 (677)
Q Consensus 376 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 455 (677)
+.-+..-|+..+|.++-.+..-||-..|---+.+++..+++++-+++-+.+ ++ ++-|.-+..+|.+.|+.++|.
T Consensus 691 v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAksk-----ks-PIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSK-----KS-PIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhcc-----CC-CCCchhHHHHHHhcccHHHHh
Confidence 555667899999999999999899998988899999999998766655443 22 677888999999999999999
Q ss_pred HHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 456 KYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 456 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.++.+.. |.. -.+.+|.+.|++.+|.++--+-
T Consensus 765 KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 765 KYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hhhhccC---ChH-------HHHHHHHHhccHHHHHHHHHHh
Confidence 9987653 221 4678999999999998876554
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.26 E-value=0.24 Score=48.93 Aligned_cols=113 Identities=12% Similarity=0.172 Sum_probs=68.6
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhC-CCchHHHHHHHHHHHC----CCCCC--HhHHHHHHHH
Q 037537 168 NSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQH-REGLEALQLFQEMVSL----QLGLD--MYTLASILTA 240 (677)
Q Consensus 168 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~pd--~~t~~~ll~a 240 (677)
...+..|...|++..|-+++..+ ...|-.. |++++|++.|++..+. | .+. ...+..+...
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~l------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKEL------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHH------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 44456788888888887777766 4456566 7888898888877542 3 121 2345566677
Q ss_pred HccCCChHHHHHHHHHHHHhCCCCch-------hhHHHHHHHHHHcCCCHHHHHHHHhhCCC
Q 037537 241 FTSLEDLVGGLQFHAHLIKSGFHQNS-------HIGSGLIDLYAKCSGDMRDCMKVFEEIPQ 295 (677)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~~A~~~f~~~~~ 295 (677)
+.+.|++++|.++++.+.......+. ....++| .+...|+ ...|.+.|++...
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D-~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGD-YVAARKALERYCS 224 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT--HHHHHHHHHHHGT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCC-HHHHHHHHHHHHh
Confidence 78888888888888888765432221 1223333 3334477 8888888877543
No 191
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=2.3 Score=45.95 Aligned_cols=120 Identities=11% Similarity=-0.058 Sum_probs=75.9
Q ss_pred HcCCCCChhhHHH-----HHHHHHccCChHHHHHHHhhccccC---hhHHHHHHHHHHhcC---ChhHHHHHhccCCC--
Q 037537 27 KNLVPFSAYLSNH-----FILLYSKCGCLSAAHHAFNQTQHAN---VFSFNVLLAAYARQL---RIASARQLFDQIPQ-- 93 (677)
Q Consensus 27 ~~~~~~~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g---~~~~A~~~f~~m~~-- 93 (677)
+.|++.+..-|.. +++-+...+.+..|.++-..+..|. ..++.....-+.+.. +-+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 3456655555544 4666778888999999888877755 566777777776663 23334444444544
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCC----CCcccHHHHHHHhhcchh
Q 037537 94 PDLVSYNTLISAYADCGDTESALSLFKDMREKRFD----TDGFTLSGLITASSNNLC 146 (677)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~a~~~~~~ 146 (677)
...++|..+.+---+.|+++-|..+++.=...+-. .+..-+...|.-+...++
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d 561 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGD 561 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCC
Confidence 56788999988888999999999888743222211 122234445555555555
No 192
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.15 E-value=1.8 Score=43.98 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=37.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHH
Q 037537 411 AQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCM 477 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 477 (677)
..+|++.++.-.-....+ +.|++.+|..+.-......++++|..++.. ++|+..++++=
T Consensus 473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~------LP~n~~~~dsk 531 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK------LPPNERMRDSK 531 (549)
T ss_pred HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh------CCCchhhHHHH
Confidence 346777776655555554 677777777766666667777777777653 35666665543
No 193
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.12 E-value=2.9 Score=46.17 Aligned_cols=98 Identities=18% Similarity=0.194 Sum_probs=68.5
Q ss_pred ccCChHHHHHHHhhccc--cChhHHHHHHHHH--HhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHH
Q 037537 46 KCGCLSAAHHAFNQTQH--ANVFSFNVLLAAY--ARQLRIASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSL 118 (677)
Q Consensus 46 ~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 118 (677)
..+++..|.+-...+.+ |+. .|...+.++ .+.|+.++|..+++.... .|..|...+-..|...++.++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 44567777777777666 443 344455554 578999999988887654 4778888999999999999999999
Q ss_pred HHHhHhcCCCCCcccHHHHHHHhhcchh
Q 037537 119 FKDMREKRFDTDGFTLSGLITASSNNLC 146 (677)
Q Consensus 119 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 146 (677)
|++.... .|+..-...++.++.+..+
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHH
Confidence 9988754 4554444444444444433
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.07 E-value=0.11 Score=55.58 Aligned_cols=126 Identities=10% Similarity=-0.005 Sum_probs=84.1
Q ss_pred cchhHHHHHHHHc--c---CCHHHHHHHHhcCCC--CC-cchHHHHHHHHHHcC--------ChHHHHHHHHHHHHCC-C
Q 037537 369 ISVNNALVAMYSK--C---GNLEDARRLFDRMPE--HN-TVSLNSMIAGYAQHG--------IGMEALRLFEWMLETN-I 431 (677)
Q Consensus 369 ~~~~~~li~~y~k--~---g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~g-~ 431 (677)
...|...+.+... . +..+.|..+|++..+ |+ ...|..+..+|.... +...+.+...+..... .
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~ 416 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL 416 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence 5666666655433 2 236788888888765 43 234554444443321 1233444444433321 2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 432 PPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 432 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..+...+..+.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++.
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334567777666666789999999999999864 688889999999999999999999999876
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.05 E-value=0.03 Score=40.98 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=34.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 407 IAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 407 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
...+.+.|++++|++.|++.++.. +-+...+..+...+...|++++|..+|+.+.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566666666666666666643 223455666666666666666666666666543
No 196
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.96 E-value=0.04 Score=52.47 Aligned_cols=93 Identities=22% Similarity=0.259 Sum_probs=81.2
Q ss_pred HHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHH
Q 037537 379 YSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEG 454 (677)
Q Consensus 379 y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 454 (677)
..+.+++++|...|.+..+ .|.+-|..-..+|.+.|.++.|++-.+..+. +.|. ..+|..|-.++...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHH
Confidence 4578999999999998765 5788899999999999999999999999888 5666 57999999999999999999
Q ss_pred HHHHHHhHHhcCCccChHHHHH
Q 037537 455 QKYFSMMKDMFGFEPEGEHYSC 476 (677)
Q Consensus 455 ~~~~~~m~~~~~~~p~~~~~~~ 476 (677)
.+.|++.. .+.|+-.+|-.
T Consensus 169 ~~aykKaL---eldP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKAL---ELDPDNESYKS 187 (304)
T ss_pred HHHHHhhh---ccCCCcHHHHH
Confidence 99999887 57999887754
No 197
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.92 E-value=0.09 Score=46.01 Aligned_cols=67 Identities=25% Similarity=0.414 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH-----
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMR----- 547 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~----- 547 (677)
....++..+...|++++|.++.+++ +..+|-|...|..++.+|...|+..+|.+++++++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~---------------l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRA---------------LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH---------------HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHH---------------HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4566778888999999999998876 68899999999999999999999999999998874
Q ss_pred hCCCccC
Q 037537 548 DRGVQKK 554 (677)
Q Consensus 548 ~~g~~~~ 554 (677)
+.|+.|.
T Consensus 129 elg~~Ps 135 (146)
T PF03704_consen 129 ELGIEPS 135 (146)
T ss_dssp HHS----
T ss_pred HhCcCcC
Confidence 4566654
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.86 E-value=0.034 Score=41.23 Aligned_cols=64 Identities=22% Similarity=0.214 Sum_probs=47.2
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhHH
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG-KVAEGQKYFSMMKD 463 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~~~~a~~~~~~m~~ 463 (677)
+...|..+...+...|++++|+..|++.++.. +-+...|..+..++...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34567777888888888888888888888743 223567777777777787 68888888877765
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.79 E-value=0.15 Score=42.54 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=40.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCC--HhHHHHHHHHHccCCChHHHHHHHHHHHHh
Q 037537 202 MVVAYGQHREGLEALQLFQEMVSLQLGLD--MYTLASILTAFTSLEDLVGGLQFHAHLIKS 260 (677)
Q Consensus 202 li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 260 (677)
+..++-..|+.++|+.+|++....|+..+ ...+..+-+++...|++++|..+++.....
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456667888888888888877776544 334555666677777777777777776654
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.72 E-value=0.56 Score=49.37 Aligned_cols=78 Identities=19% Similarity=0.134 Sum_probs=50.1
Q ss_pred HHHHHhcCCChHHHH--HHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChh
Q 037537 5 VLKTCVGRRDLVTGK--SLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIA 82 (677)
Q Consensus 5 ll~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (677)
.=++|.+.++..-.. .-++.+.+.|-.|+... +...|+-.|.+.+|-++|.+--. -|..+.+|.....++
T Consensus 604 ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~-----enRAlEmyTDlRMFD 675 (1081)
T KOG1538|consen 604 ARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGH-----ENRALEMYTDLRMFD 675 (1081)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCc-----hhhHHHHHHHHHHHH
Confidence 335666666655433 34566777776676654 44567788999999999875443 245566666666677
Q ss_pred HHHHHhcc
Q 037537 83 SARQLFDQ 90 (677)
Q Consensus 83 ~A~~~f~~ 90 (677)
.|.++...
T Consensus 676 ~aQE~~~~ 683 (1081)
T KOG1538|consen 676 YAQEFLGS 683 (1081)
T ss_pred HHHHHhhc
Confidence 77666544
No 201
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.72 E-value=0.11 Score=43.65 Aligned_cols=95 Identities=9% Similarity=0.230 Sum_probs=65.5
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG 449 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 449 (677)
.++.+++-++++.|+++....+.+..-..|+. +-...+. --......|+..++.+++.+++..|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n~ 66 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYNG 66 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 45566667777777777766666554221110 0000000 1112346799999999999999999
Q ss_pred CHHHHHHHHHHhHHhcCCccChHHHHHHHHH
Q 037537 450 KVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL 480 (677)
Q Consensus 450 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 480 (677)
++..|.++.+...+.|+++-+..+|..|+.=
T Consensus 67 ~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 67 DIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999988888889888763
No 202
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.77 Score=45.89 Aligned_cols=149 Identities=16% Similarity=0.156 Sum_probs=95.2
Q ss_pred ccCCHHHHHHHHhcCCCCCcc-hHHHHHHH--HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH---H----------HH
Q 037537 381 KCGNLEDARRLFDRMPEHNTV-SLNSMIAG--YAQHGIGMEALRLFEWMLETNIPPTNITFVSV---L----------SA 444 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~~~~~-~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l----------~a 444 (677)
-.|+.++|.++--.+.+-|.+ .+...+++ +-..++.+.|...|++.+.. .|+...-... . +-
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~ 258 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGND 258 (486)
T ss_pred hcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence 345555555554444433222 22222322 23355667777777776663 4554322221 1 22
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCccC-----hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCC
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEPE-----GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSN 519 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~ 519 (677)
..+.|.+..|.+.+.+.+ ++.|+ ...|........|.|++.+|+.--++. +.++|.-
T Consensus 259 ~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A---------------l~iD~sy 320 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA---------------LKIDSSY 320 (486)
T ss_pred HhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh---------------hhcCHHH
Confidence 346788999999888877 45554 445666666778899999998877665 4666666
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 520 AVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 520 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
...|..-.+++...++|++|.+-+++..+.
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677777888889999999999999887654
No 203
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.50 E-value=0.94 Score=43.42 Aligned_cols=173 Identities=15% Similarity=0.165 Sum_probs=98.2
Q ss_pred hcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHH
Q 037537 308 YSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLED 387 (677)
Q Consensus 308 ~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~ 387 (677)
+.+. |++++|.+.|+++... .|+.... ....-.+..+|.+.+++++
T Consensus 42 ~~~~-g~y~~Ai~~f~~l~~~--yP~s~~a-------------------------------~~a~l~la~ayy~~~~y~~ 87 (243)
T PRK10866 42 KLQD-GNWKQAITQLEALDNR--YPFGPYS-------------------------------QQVQLDLIYAYYKNADLPL 87 (243)
T ss_pred HHHC-CCHHHHHHHHHHHHHh--CCCChHH-------------------------------HHHHHHHHHHHHhcCCHHH
Confidence 3445 7788888888887763 3443211 2222355666777777777
Q ss_pred HHHHHhcCCC--C--CcchHHHHHHHHHH--cC---------------C---hHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037537 388 ARRLFDRMPE--H--NTVSLNSMIAGYAQ--HG---------------I---GMEALRLFEWMLETNIPPTNITFVSVLS 443 (677)
Q Consensus 388 A~~~~~~~~~--~--~~~~~~~li~~~~~--~g---------------~---~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 443 (677)
|...|++..+ | .-+-|...+.|.+. .+ + ..+|++.|++.++
T Consensus 88 A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~--------------- 152 (243)
T PRK10866 88 AQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR--------------- 152 (243)
T ss_pred HHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------
Confidence 7777776643 2 11223333333321 11 1 1234444444444
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCC-CChHHHHHHHHHhccCCCCchh
Q 037537 444 ACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFN-PGSIALKAANHFLQLEPSNAVP 522 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~l~~l~p~~~~~ 522 (677)
-+=.+.-.++|...+..+... -..+--.+...|.+.|.+.-|..-++.+..+ |+. |....+
T Consensus 153 ~yP~S~ya~~A~~rl~~l~~~-----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t-------------~~~~ea 214 (243)
T PRK10866 153 GYPNSQYTTDATKRLVFLKDR-----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT-------------QATRDA 214 (243)
T ss_pred HCcCChhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC-------------chHHHH
Confidence 333334455565555554432 1122335567788899988887777766311 222 234567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 523 YVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 523 ~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
...|..+|...|..++|.++.+...
T Consensus 215 l~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 215 LPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHh
Confidence 8889999999999999988877654
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.47 E-value=0.17 Score=48.97 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=63.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccCh----HHHHHHHHHHhhcCChHHHHHHHHhCCC-CCChHHHHHHHH
Q 037537 437 TFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG----EHYSCMIDLLGRAGKLTDAERLIEAMPF-NPGSIALKAANH 511 (677)
Q Consensus 437 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~ 511 (677)
.|...+......|++++|...|+.+.+. .|+. ..+--+..+|...|++++|...|+.+.. -|+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--------- 212 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--------- 212 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------
Confidence 3444444445567777777777777765 3332 3555677778888888888888877621 111
Q ss_pred HhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 512 FLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 512 l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.|..+.++..++.+|...|++++|.+++++..+.
T Consensus 213 ----s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 213 ----SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred ----CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1334556666777888888888888888877653
No 205
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.45 E-value=1.1 Score=42.94 Aligned_cols=173 Identities=12% Similarity=0.060 Sum_probs=94.3
Q ss_pred HHHHhcCChhHHHHHHhhc-CCCCCee-e---HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHcc--C
Q 037537 172 TCYSRNGFLDEAKRVFYEM-GEIKDEV-S---WNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTS--L 244 (677)
Q Consensus 172 ~~~~~~g~~~~A~~~f~~m-~~~~~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~--~ 244 (677)
..+.+.|++++|.+.|+++ ...|+.. . .-.+..++.+.+++++|...|++..+.-..-....+...+.+.+. .
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 3445678899999999888 2233322 1 234557778889999999999888875433233344444444321 0
Q ss_pred ---------------CChH---HHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHh
Q 037537 245 ---------------EDLV---GGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMIS 306 (677)
Q Consensus 245 ---------------~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~ 306 (677)
.|.. .|.+.++.+++. |-...- ..+|...+..+...-...--.+..
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~y-a~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQY-TTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 233334444333 222122 333333333322111111112344
Q ss_pred hhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHH
Q 037537 307 GYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLE 386 (677)
Q Consensus 307 ~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 386 (677)
-|.+. |.+..|..-|+.+.+. -|+.... ......++.+|.+.|..+
T Consensus 184 ~Y~~~-~~y~AA~~r~~~v~~~--Yp~t~~~-------------------------------~eal~~l~~ay~~lg~~~ 229 (243)
T PRK10866 184 YYTKR-GAYVAVVNRVEQMLRD--YPDTQAT-------------------------------RDALPLMENAYRQLQLNA 229 (243)
T ss_pred HHHHc-CchHHHHHHHHHHHHH--CCCCchH-------------------------------HHHHHHHHHHHHHcCChH
Confidence 46677 8888888888888764 3443222 445566777788888888
Q ss_pred HHHHHHhc
Q 037537 387 DARRLFDR 394 (677)
Q Consensus 387 ~A~~~~~~ 394 (677)
+|..+...
T Consensus 230 ~a~~~~~~ 237 (243)
T PRK10866 230 QADKVAKI 237 (243)
T ss_pred HHHHHHHH
Confidence 87776543
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.29 E-value=0.25 Score=47.77 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHH
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN----ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCM 477 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 477 (677)
|+.-+..+.+.|++++|+..|+.+++. .|+. ..+.-+..++...|++++|...|+.+.+.|.-.|. ...+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444444445567788888888887774 3443 35566667777788888888888888765333222 3444455
Q ss_pred HHHHhhcCChHHHHHHHHhC
Q 037537 478 IDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m 497 (677)
...|.+.|+.++|.+++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 66677778888888887765
No 207
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.26 E-value=0.026 Score=37.45 Aligned_cols=42 Identities=26% Similarity=0.460 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHH
Q 037537 472 EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLAN 528 (677)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~ 528 (677)
..+..+...|.+.|++++|.+++++. ++.+|+|+..|..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~---------------l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRA---------------LALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHHCcCCHHHHHHhhh
Confidence 45778899999999999999999987 5788999988887753
No 208
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.25 E-value=0.032 Score=42.60 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 471 GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
..+|+.+...|.+.|++++|++.+++... ..+..-.-.|.-..++..++.+|...|++++|.+.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALD--------IEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH--------HHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45688889999999999999999987621 10011011122356789999999999999999999987643
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.19 E-value=0.18 Score=44.17 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCccChHH
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKD----MFGFEPEGEH 473 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 473 (677)
..++..+...|++++|+.+.+.+.... +-|...+..++.++...|+..+|.++|+.+.+ ..|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555566666666666666666643 44556666667777777777766666665532 3466666554
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=0.27 Score=45.87 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=97.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc----cChhHHHHHHH-----H
Q 037537 4 QVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH----ANVFSFNVLLA-----A 74 (677)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~-----~ 74 (677)
.++......+.+...+.++..+++...+.++.....|.++-.+.|+.+.|...|+...+ -|...++.++. .
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 45556666777888888899999888788899999999999999999999999997776 33333333333 4
Q ss_pred HHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHH
Q 037537 75 YARQLRIASARQLFDQIPQP---DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLI 138 (677)
Q Consensus 75 ~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 138 (677)
|.-++++.+|.+.|++++.. |.+.-|.=.-...-.|+..+|++..+.|.+. .|.+.+-.+++
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 55678899999999998863 4444454333444468999999999999875 56666655444
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.11 E-value=0.079 Score=54.01 Aligned_cols=65 Identities=22% Similarity=0.112 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCch---hHHHHHHHHHhcCChHHHHHHHHHH
Q 037537 470 EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAV---PYVMLANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m 546 (677)
+...++.+..+|.+.|++++|...|++. ++++|++.. +|..+..+|+..|+.++|+..+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rA---------------LeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETA---------------LELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678888999999999999999999876 578888874 5999999999999999999999999
Q ss_pred HhC
Q 037537 547 RDR 549 (677)
Q Consensus 547 ~~~ 549 (677)
.+.
T Consensus 139 Lel 141 (453)
T PLN03098 139 LRD 141 (453)
T ss_pred HHh
Confidence 885
No 212
>PRK15331 chaperone protein SicA; Provisional
Probab=94.97 E-value=1.5 Score=38.40 Aligned_cols=87 Identities=10% Similarity=0.109 Sum_probs=71.3
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchh
Q 037537 444 ACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVP 522 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~ 522 (677)
-+.+.|++++|..+|.-+..- .| +..-+..|...+-..|++++|...+... ..++++|+..
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~---d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A---------------~~l~~~dp~p 107 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY---DFYNPDYTMGLAAVCQLKKQFQKACDLYAVA---------------FTLLKNDYRP 107 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHcccCCCCc
Confidence 345889999999999988753 33 4555677888888899999999999865 2455678888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 523 YVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 523 ~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+.-....|...|+.+.|...|....+
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999988766
No 213
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.86 E-value=0.21 Score=46.99 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=84.5
Q ss_pred HHHHHhcCC--CCCcchHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----------
Q 037537 388 ARRLFDRMP--EHNTVSLNSMIAGYAQH-----GIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGK---------- 450 (677)
Q Consensus 388 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---------- 450 (677)
.++.|.... ++|-.+|-+++..+..+ +.++=....++.|.+.|+.-|..+|..||+.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 456677776 67888999999888754 5566677788999999999999999999987765432
Q ss_pred ------HHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChH-HHHHHHHhC
Q 037537 451 ------VAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLT-DAERLIEAM 497 (677)
Q Consensus 451 ------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m 497 (677)
-+-+..+++.|... |+.||.++-..|+++++|.|..- +..++.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 24478899999876 99999999999999999998643 333443334
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.74 E-value=0.22 Score=37.26 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=31.1
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 409 GYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 409 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
.|.+.+++++|++.++.++..+ +.+...+......+...|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555666666666666666542 223444555555556666666666666666543
No 215
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.68 E-value=0.44 Score=44.95 Aligned_cols=100 Identities=13% Similarity=0.187 Sum_probs=70.8
Q ss_pred CChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHH
Q 037537 245 EDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKK 324 (677)
Q Consensus 245 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~ 324 (677)
+.++-....+..|.+.|++.|..+|+.|++.+-| |. + .|. ..+....-.|- .+-+-+++++++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK-gk-f-----------iP~-nvfQ~~F~HYP---~QQ~C~I~vLeq 148 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK-GK-F-----------IPQ-NVFQKVFLHYP---QQQNCAIKVLEQ 148 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc-cc-c-----------ccH-HHHHHHHhhCc---hhhhHHHHHHHH
Confidence 4455555566778888888899999998888877 33 1 011 11112222333 234679999999
Q ss_pred HhhcCCCCCcchHHHHHHHhhccC--hhHHHHHHHHHHH
Q 037537 325 LNRVGYHPDDCSFVCVISACSNLS--PSLGKQIHALTIK 361 (677)
Q Consensus 325 m~~~g~~p~~~t~~~ll~a~~~~~--~~~~~~i~~~~~~ 361 (677)
|...|+.||..+-..+++++.+.+ ......+.-++-+
T Consensus 149 ME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 149 MEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 999999999999999999999988 6666666666655
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.58 E-value=0.47 Score=47.18 Aligned_cols=138 Identities=11% Similarity=0.048 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCc-----cC
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWML----ETNIPP-TNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFE-----PE 470 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-----p~ 470 (677)
..|..|...|.-.|+++.|+..-+.=+ +-|-+. ....+..+.+++.-.|.++.|.+.++..... .++ ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L-Aielg~r~vE 274 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL-AIELGNRTVE 274 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH-HHHhcchhHH
Confidence 356666666777788888887655432 233222 2346777788888888999988887765432 111 22
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 471 GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
....-+|.+.|.-...++.|+.++.+-. .+++.+-.. -....++++|.++|...|..+.|+.....-.+
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHL--------aIAqeL~Dr-iGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHL--------AIAQELEDR-IGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHh-hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3445567777777778888888876531 111111111 12346799999999999999999887766544
No 217
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.52 E-value=5.7 Score=39.68 Aligned_cols=209 Identities=11% Similarity=0.095 Sum_probs=124.4
Q ss_pred CCCHHHHHHHHhhCCC--C-ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcC-CCCCcc--hHHHHHHHhhcc--C--h
Q 037537 280 SGDMRDCMKVFEEIPQ--P-DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVG-YHPDDC--SFVCVISACSNL--S--P 349 (677)
Q Consensus 280 g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~--~--~ 349 (677)
|. -+.|+..-+..-. | -.-.|.+.+...+.. |+++.|+++.+.-.... +.+|.. .-..+|.+-+.. . .
T Consensus 168 Ga-reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~-gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 168 GA-REAARHYAERAAEKAPQLPWAARATLEARCAA-GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred cc-HHHHHHHHHHHHhhccCCchHHHHHHHHHHhc-CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 44 4555444443321 2 223566677777777 77777777776655432 334432 122333332221 1 2
Q ss_pred hHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH-
Q 037537 350 SLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLE- 428 (677)
Q Consensus 350 ~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~- 428 (677)
..++..-.. ...+.|+.+...-.-...|.+.|++.++-.+++.+-+..+..--..+..+++.|+ .++.=+++..+
T Consensus 246 ~~Ar~~A~~--a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 246 ASARDDALE--ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHHHH--HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHHHHHHHH
Confidence 222222222 2344555334444456788999999999999998865333222223333445554 45554554433
Q ss_pred CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHh-hcCChHHHHHHHHhC
Q 037537 429 TNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLG-RAGKLTDAERLIEAM 497 (677)
Q Consensus 429 ~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m 497 (677)
..++|| ..+...+..+-...|++..|..--+... ...|....|..|.+.-. ..|+-.++...+-+.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 225666 5677788888889999998888777665 45899999998888764 449999999998765
No 218
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.50 E-value=3.3 Score=36.85 Aligned_cols=134 Identities=16% Similarity=0.131 Sum_probs=98.8
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHH
Q 037537 398 HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCM 477 (677)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 477 (677)
|.+..--.|..+....|+..||...|++...--+.-|......+.++....++..+|...++.+.+..--.-++...-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 34444556888999999999999999999886667788899999999999999999999999988652111124445566
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 478 IDLLGRAGKLTDAERLIEAMP-FNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
...|...|+.++|+.-|+... .-| ++..-......+++.|+.+++..-+....+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~yp-----------------g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYP-----------------GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCC-----------------CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 788999999999999988652 122 234444555667888988877665554433
No 219
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.61 Score=46.69 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037537 472 EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 551 (677)
..+..+.-.|.+.+++.+|++..++. |+++|+|..+..--..+|+..|+++.|...|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kv---------------Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~-- 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKV---------------LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL-- 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHH---------------HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--
Confidence 35666777788999999888876654 7999999999999999999999999999999999874
Q ss_pred ccCCceeEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Q 037537 552 QKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLEEMSRKMKQ 595 (677)
Q Consensus 552 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~ 595 (677)
.|..++|...|..+.+++++
T Consensus 321 ------------------------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ------------------------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ------------------------CCCcHHHHHHHHHHHHHHHH
Confidence 25567788888888877765
No 220
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.99 Score=43.46 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=50.0
Q ss_pred cCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHHHHH
Q 037537 366 SNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHG---IGMEALRLFEWMLETNIPPTNITFV 439 (677)
Q Consensus 366 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~ 439 (677)
|++..-|-.|...|...|+.+.|...|.+..+ +|+..+..+..++..+. ...++..+|++++... +-|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 33355556666666666666666666654433 34444444444443322 2345556666665532 22233444
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHH
Q 037537 440 SVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 440 ~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
.|...+...|++.+|...|+.|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 444455556666666666666654
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.95 E-value=0.2 Score=38.10 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=36.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhc---CC-ccC-hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 437 TFVSVLSACAHTGKVAEGQKYFSMMKDMF---GF-EPE-GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 437 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+++.+...+...|++++|+.+|++..+.. |- .|+ ..++..+...|.+.|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555556666666666665555321 11 122 456677777888888888888887754
No 222
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.82 E-value=0.35 Score=40.75 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=21.4
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhH
Q 037537 95 DLVSYNTLISAYADCGDTESALSLFKDMR 123 (677)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 123 (677)
|..++.++|.++++.|+.+....+++..-
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W 29 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW 29 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 34567778888888888888887776543
No 223
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=13 Score=41.02 Aligned_cols=168 Identities=13% Similarity=0.076 Sum_probs=76.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH----HccCChHHHHHHHhhccc-cChhHHHHHHHHHHhcCC
Q 037537 6 LKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLY----SKCGCLSAAHHAFNQTQH-ANVFSFNVLLAAYARQLR 80 (677)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~ 80 (677)
|........++.|..+- .+.+ .+......+...| -+.|++++|..-+=+.+. .++ ..++.-|....+
T Consensus 341 L~iL~kK~ly~~Ai~LA---k~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLA---KSQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHhhhHHHHHHHH---HhcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHH
Confidence 33344444555555432 2233 3344444444444 467888888876655443 111 123333333333
Q ss_pred hhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHH
Q 037537 81 IASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIY 157 (677)
Q Consensus 81 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~ 157 (677)
+.+-...++.+.+ .+...-+.|+.+|.+.++.++-.++.+.-. .|.- .+-+-..+.-|.+.+-.... .-.+.+
T Consensus 413 IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a-~~LA~k 488 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA-ELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH-HHHHHH
Confidence 3333344444332 233344566777777777766655554433 2211 11122233333222220000 001111
Q ss_pred hCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc
Q 037537 158 CGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM 190 (677)
Q Consensus 158 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 190 (677)
. ..+..+...+ +-..+++++|.+.+..+
T Consensus 489 ~--~~he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 F--KKHEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred h--ccCHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 1 1233333333 34568899999999998
No 224
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.71 E-value=1.2 Score=46.69 Aligned_cols=158 Identities=17% Similarity=0.086 Sum_probs=95.8
Q ss_pred HHHhcCCChHHHHHHHHH-HHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChhHHH
Q 037537 7 KTCVGRRDLVTGKSLHAL-YLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIASAR 85 (677)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 85 (677)
+...-+++++.+.+..+. -+-.. .+....+.++..+-+.|..+.|.++-. |+ ..-.....++|+++.|.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~--i~~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPN--IPKDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhccc--CChhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHHhcCCHHHHH
Confidence 445556777776555531 11111 225558888888888898888887754 22 23345666889999999
Q ss_pred HHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChh
Q 037537 86 QLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYAS 165 (677)
Q Consensus 86 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~ 165 (677)
++-++.. +...|..|.....+.|+++-|.+.|.+...-
T Consensus 339 ~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~---------------------------------------- 376 (443)
T PF04053_consen 339 EIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKDF---------------------------------------- 376 (443)
T ss_dssp HHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-H----------------------------------------
T ss_pred HHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc----------------------------------------
Confidence 8876665 5568999999999999999999988876532
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHH
Q 037537 166 VNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQE 221 (677)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 221 (677)
..|+-.|.-.|+.+.-.++-+.. ... .-+|....++.-.|+.++..+++.+
T Consensus 377 --~~L~lLy~~~g~~~~L~kl~~~a-~~~--~~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 377 --SGLLLLYSSTGDREKLSKLAKIA-EER--GDINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp --HHHHHHHHHCT-HHHHHHHHHHH-HHT--T-HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred --cccHHHHHHhCCHHHHHHHHHHH-HHc--cCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555666777766666665544 111 1256666666666777777766644
No 225
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.70 E-value=1.2 Score=46.74 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=96.3
Q ss_pred HHhcCChhHHHHHhc--cC-CCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHH
Q 037537 75 YARQLRIASARQLFD--QI-PQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQL 151 (677)
Q Consensus 75 ~~~~g~~~~A~~~f~--~m-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i 151 (677)
..-.++++++.+... ++ +.-...-.+.+++.+-+.|.++.|+++-.+-.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~---------------------------- 322 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD---------------------------- 322 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH----------------------------
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH----------------------------
Confidence 344577777444332 11 11123447888888888999999988855432
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH
Q 037537 152 HCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDM 231 (677)
Q Consensus 152 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 231 (677)
.-.+...++|+++.|.++.++. .+...|..|.....++|+++-|.+.|.+...
T Consensus 323 -----------------~rFeLAl~lg~L~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------- 375 (443)
T PF04053_consen 323 -----------------HRFELALQLGNLDIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKAKD------- 375 (443)
T ss_dssp -----------------HHHHHHHHCT-HHHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------
T ss_pred -----------------HHhHHHHhcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------
Confidence 2235567889999999888777 4666899999999999999999999887754
Q ss_pred hHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhC
Q 037537 232 YTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEI 293 (677)
Q Consensus 232 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~ 293 (677)
|..++-.+...|+.+.-.++.......|- +|....++.-.|+ +++..+++.+-
T Consensus 376 --~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd-~~~cv~lL~~~ 428 (443)
T PF04053_consen 376 --FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGD-VEECVDLLIET 428 (443)
T ss_dssp --HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT--HHHHHHHHHHT
T ss_pred --ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCC-HHHHHHHHHHc
Confidence 55555566677777777777766666551 3333334444466 77776666554
No 226
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.63 E-value=5 Score=35.76 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=58.3
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHh
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMPE----HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT---NITFVSVLSACA 446 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~ 446 (677)
.|.....+.|+..+|...|++... .|....-.+..+....+++.+|..+++.+.+.. |+ +.+-..+...+.
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchHHHHHHHH
Confidence 344555556666666666655432 344444445555555566666666666655532 21 123334445555
Q ss_pred ccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHH
Q 037537 447 HTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAE 491 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (677)
..|...+|+..|+....- -|+...-.-....+.+.|+.++|.
T Consensus 172 a~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 172 AQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred hcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHH
Confidence 566666666666666543 344443333344555566555544
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=93.58 E-value=0.26 Score=43.00 Aligned_cols=85 Identities=13% Similarity=0.067 Sum_probs=59.7
Q ss_pred HHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEG 454 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 454 (677)
-+-..|++++|..+|.-+.- -|..-|..|..++-..+++++|+.+|......+ .-|+..+-.....+...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 34467888888888876543 355567777777788888888888887776644 34444555566667778888888
Q ss_pred HHHHHHhHH
Q 037537 455 QKYFSMMKD 463 (677)
Q Consensus 455 ~~~~~~m~~ 463 (677)
+..|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888877765
No 228
>PRK09687 putative lyase; Provisional
Probab=93.46 E-value=8.4 Score=37.82 Aligned_cols=245 Identities=10% Similarity=-0.003 Sum_probs=115.9
Q ss_pred HHhhccccChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCh----hHHHHHHHHhHhcCCCCCc
Q 037537 56 AFNQTQHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDT----ESALSLFKDMREKRFDTDG 131 (677)
Q Consensus 56 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~ 131 (677)
+...+..+|..+....+..+...|..+-...+......+|...-...+.++.+.|+. ++++.++..+... .|+.
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 333344466666666777777766544444444434456666666667777777764 4566666666332 2333
Q ss_pred ccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCC
Q 037537 132 FTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHRE 211 (677)
Q Consensus 132 ~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~ 211 (677)
..-...+.+.+..+.... . ....+...+...-..++...--..+.++.+.++
T Consensus 106 ~VR~~A~~aLG~~~~~~~-----------~-----------------~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 106 CVRASAINATGHRCKKNP-----------L-----------------YSPKIVEQSQITAFDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred HHHHHHHHHHhccccccc-----------c-----------------cchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC
Confidence 333333333322211000 0 011122222221122233333344444444443
Q ss_pred chHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCC-ChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHH
Q 037537 212 GLEALQLFQEMVSLQLGLDMYTLASILTAFTSLE-DLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVF 290 (677)
Q Consensus 212 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f 290 (677)
.+|+..+..+... +|...-...+.+++..+ +-..+...+..+. -.++..+....+.++++.+. ..-...+.
T Consensus 158 -~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg~~~~-~~av~~Li 229 (280)
T PRK09687 158 -EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLALRKD-KRVLSVLI 229 (280)
T ss_pred -HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHccCC-hhHHHHHH
Confidence 3455555554432 33334444444444432 1223333333333 24566666666666666665 43333333
Q ss_pred hhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHh
Q 037537 291 EEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISAC 344 (677)
Q Consensus 291 ~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 344 (677)
+.+..++ ..-..+.++... |. .+|+..+..+.+. .||...-...+.+|
T Consensus 230 ~~L~~~~--~~~~a~~ALg~i-g~-~~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 230 KELKKGT--VGDLIIEAAGEL-GD-KTLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHcCCc--hHHHHHHHHHhc-CC-HhHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 4433333 233556666666 66 4677777777753 34555544444444
No 229
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.38 E-value=8.7 Score=37.77 Aligned_cols=122 Identities=14% Similarity=0.146 Sum_probs=68.3
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCCC---CcchHHHHHHHH---HHcCChHHHHHHHHHHHHCCCCCCHH-HH----HHHH
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMPEH---NTVSLNSMIAGY---AQHGIGMEALRLFEWMLETNIPPTNI-TF----VSVL 442 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~~-t~----~~ll 442 (677)
--+..+.+.++.+++.+++.+|... ....+...+..+ .. .....|...++.++...+.|... .. ...+
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~ 204 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRV 204 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 3344444567777777777776541 234555555554 33 33467777777777665666553 11 1111
Q ss_pred HHHhccC------CHHHHHHHHHHhHHhcCCccChHHHHHHHHH-------HhhcCChHHHHHHHHh
Q 037537 443 SACAHTG------KVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL-------LGRAGKLTDAERLIEA 496 (677)
Q Consensus 443 ~a~~~~g------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-------~~~~g~~~~A~~~~~~ 496 (677)
-.....+ .++....+++.+.+..+.+.+..+-.++... ..+++++++|.++++-
T Consensus 205 ~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 205 LLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 1222222 2555666666555544445555554444433 4577899999999873
No 230
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.33 E-value=11 Score=38.62 Aligned_cols=124 Identities=22% Similarity=0.227 Sum_probs=94.3
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC-----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE-----HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN-ITFVSVL 442 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 442 (677)
..++..+++.-.+..-++.|+.+|-+..+ +++..++++|.-++ .|+..-|..+|+--... -||. .-..-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 56778888888888889999999988765 57788899988666 46677888888875553 3453 3344566
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCccC--hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 443 SACAHTGKVAEGQKYFSMMKDMFGFEPE--GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 443 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.-+...++-+.|+.+|+..+++ +..+ ...|..+|+-=..-|++..|..+=+.|
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 6677889999999999977764 4444 678999999888889988887776665
No 231
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.32 E-value=1.3 Score=41.22 Aligned_cols=144 Identities=15% Similarity=0.103 Sum_probs=73.6
Q ss_pred HHHHhcCChhHHHHHHhhc-CCCC----CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHcc---
Q 037537 172 TCYSRNGFLDEAKRVFYEM-GEIK----DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTS--- 243 (677)
Q Consensus 172 ~~~~~~g~~~~A~~~f~~m-~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~--- 243 (677)
..+...|++++|.+.|+.+ ...| -..+.-.++.++.+.|++++|...|++..+.-..-....+...+.+.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 3455678999999999988 1112 2234556778888999999999999998775322222223333322211
Q ss_pred -------C---CChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCC
Q 037537 244 -------L---EDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEE 313 (677)
Q Consensus 244 -------~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~ 313 (677)
. +....|...+..+++. |=...- ..+|...+..+.+.=...--.+..-|.+. |
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~li~~---------------yP~S~y-~~~A~~~l~~l~~~la~~e~~ia~~Y~~~-~ 155 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEELIKR---------------YPNSEY-AEEAKKRLAELRNRLAEHELYIARFYYKR-G 155 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHHHHHH----------------TTSTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHCT-T
T ss_pred CccchhcccChHHHHHHHHHHHHHHHH---------------CcCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c
Confidence 1 1122333333333332 222222 44444333333211111111234556777 8
Q ss_pred CHHHHHHHHHHHhhcCCCCCc
Q 037537 314 YSDQALGCFKKLNRVGYHPDD 334 (677)
Q Consensus 314 ~~~~A~~l~~~m~~~g~~p~~ 334 (677)
.+..|..-|+.+.+. -|+.
T Consensus 156 ~y~aA~~r~~~v~~~--yp~t 174 (203)
T PF13525_consen 156 KYKAAIIRFQYVIEN--YPDT 174 (203)
T ss_dssp -HHHHHHHHHHHHHH--STTS
T ss_pred cHHHHHHHHHHHHHH--CCCC
Confidence 888888888888875 4554
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.23 E-value=3 Score=36.01 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=61.8
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG 449 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 449 (677)
..++..+.+.+........++.+.. .+....|.++..|++.+ ..+.++.++. .++......++..|.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 4556666666666666666665543 23446777777777664 3444444442 233444555677777777
Q ss_pred CHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhc-CChHHHHHHHHh
Q 037537 450 KVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRA-GKLTDAERLIEA 496 (677)
Q Consensus 450 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~ 496 (677)
.++++..++..+.. +...++.+... ++.+.|.+++.+
T Consensus 84 l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 84 LYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred cHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 77777777665521 22233333333 677777777765
No 233
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.22 E-value=8.4 Score=38.08 Aligned_cols=150 Identities=11% Similarity=0.185 Sum_probs=86.9
Q ss_pred hhhHHHHHhhhcc-cCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHH
Q 037537 298 LVLWNTMISGYSQ-KEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALV 376 (677)
Q Consensus 298 ~~~~~~li~~~~~-~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li 376 (677)
..++.+++..... -...+++.+.+++.|.+.|++-+..+|.+.+....... .. -
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~-----------------~~---~----- 114 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEE-----------------KE---D----- 114 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcc-----------------cc---c-----
Confidence 3444444444332 11234567788889999999888887754332221100 00 0
Q ss_pred HHHHccCCHHHHHHHHhcCCC-------CCcchHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 037537 377 AMYSKCGNLEDARRLFDRMPE-------HNTVSLNSMIAGYAQHGI----GMEALRLFEWMLETNIPPTN--ITFVSVLS 443 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~~--~t~~~ll~ 443 (677)
..-...+|..+|+.|.+ ++-.++.+|+.. ..++ .+.+...|+.+.+.|+..+. .....+|.
T Consensus 115 ----~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLa 188 (297)
T PF13170_consen 115 ----YDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILA 188 (297)
T ss_pred ----HHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 00124556677777764 233445555443 2222 35677888888888877653 34444554
Q ss_pred HHhccCC--HHHHHHHHHHhHHhcCCccChHHHHHHHH
Q 037537 444 ACAHTGK--VAEGQKYFSMMKDMFGFEPEGEHYSCMID 479 (677)
Q Consensus 444 a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 479 (677)
.+..... +.++.++++.+.+. |+++...+|..+.-
T Consensus 189 L~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 189 LSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred hccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 4433322 45788899999988 99998888876643
No 234
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.14 E-value=1.4 Score=41.01 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=19.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 525 MLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 525 ~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+..-|.+.|.|..|..-++.+.+.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4577889999999999888887763
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=2.1 Score=41.14 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=80.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCCh
Q 037537 408 AGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKL 487 (677)
Q Consensus 408 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 487 (677)
......|+..+|..+|+...... +-+...-..+..++...|+++.|..++..+-.. .. ..-+.. +
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~--~~~~~~----------l 206 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQ--DKAAHG----------L 206 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--ch--hhHHHH----------H
Confidence 35567788889999888888753 333556667778888899999998888876432 11 111111 1
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 488 TDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
...++++..+...|+.. ..+.-+.-+|+|...-..|...|...|+.++|.+.+-.+.++
T Consensus 207 ~a~i~ll~qaa~~~~~~---~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 207 QAQIELLEQAAATPEIQ---DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHHhcCCCHH---HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11233444443333221 222334567888888999999999999999999876666543
No 236
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.96 E-value=22 Score=41.16 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=14.7
Q ss_pred CCHhHHHHHHHHHccCC--ChHHHHHHHHHHH
Q 037537 229 LDMYTLASILTAFTSLE--DLVGGLQFHAHLI 258 (677)
Q Consensus 229 pd~~t~~~ll~a~~~~~--~~~~a~~~~~~~~ 258 (677)
|+ .-...+|.++.+.+ .++.+.+....+.
T Consensus 789 ~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 789 PD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred cc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 44 33445555665555 4555555544444
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.90 E-value=8.2 Score=40.13 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHH
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPP--TNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMI 478 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 478 (677)
-.+..+..+.|+.++|++.|++|.+.. ++ +......|+.++...+.+.++..++.+-.+. ..+.+ ...|+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-SLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-cCCchHHHHHHHHH
Confidence 346667778899999999999998753 33 2346778889999999999999998886532 22222 44566543
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.59 E-value=0.92 Score=46.54 Aligned_cols=65 Identities=12% Similarity=0.037 Sum_probs=52.8
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCCe----eeHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 037537 161 DHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKDE----VSWNSMVVAYGQHREGLEALQLFQEMVSL 225 (677)
Q Consensus 161 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 225 (677)
+.+...++.+-..|.+.|++++|...|++. ...|+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345667788888999999999999999886 445554 35889999999999999999999998874
No 239
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.56 E-value=4.1 Score=35.09 Aligned_cols=42 Identities=24% Similarity=0.121 Sum_probs=20.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 037537 4 QVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSK 46 (677)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 46 (677)
.++..+...+........++.+++.+ +.++..++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444445555555555555444 2444445555555543
No 240
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.00 E-value=6.1 Score=33.07 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037537 472 EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 551 (677)
+.....++.+...|+-+.-.++..+. +.-+..+|....-+.++|.+.|+..++-+++++.-++|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l---------------~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNEL---------------KKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH--------------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH---------------hhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444455566666666665555554 222234678899999999999999999999999999997
Q ss_pred c
Q 037537 552 Q 552 (677)
Q Consensus 552 ~ 552 (677)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 5
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=1.3 Score=44.32 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=91.0
Q ss_pred HHHHHccCCHHHHHHHHhcCCC------------------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 037537 376 VAMYSKCGNLEDARRLFDRMPE------------------HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNIT 437 (677)
Q Consensus 376 i~~y~k~g~~~~A~~~~~~~~~------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 437 (677)
.+.|.|.|++..|..-|++... .-..+++.+..+|.+.+++.+|++.-++.+..+ ++|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 3567889999998888776421 123467788889999999999999999999976 777888
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCccCh-HHHHHHHHHHhhcCChHH-HHHHHHhCC
Q 037537 438 FVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG-EHYSCMIDLLGRAGKLTD-AERLIEAMP 498 (677)
Q Consensus 438 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~-A~~~~~~m~ 498 (677)
+-.=-.+|...|+++.|+..|+.+.+ +.|+. ..-+.|+.+--+.....+ ..++|.+|-
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87888899999999999999999986 47764 444555555555555444 467777774
No 242
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.84 E-value=0.084 Score=46.03 Aligned_cols=85 Identities=12% Similarity=0.106 Sum_probs=58.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChhH
Q 037537 4 QVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIAS 83 (677)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (677)
.+++.+...+.+......++.+.+.+...++...+.++..|++.+..+...+++..... +-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46778888889999999999999887677899999999999999887888887774333 222334444444444444
Q ss_pred HHHHhccC
Q 037537 84 ARQLFDQI 91 (677)
Q Consensus 84 A~~~f~~m 91 (677)
|.-++..+
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 44444443
No 243
>PRK11906 transcriptional regulator; Provisional
Probab=91.79 E-value=6 Score=40.92 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=92.2
Q ss_pred CHHHHHHHHhcCC---CCC---cchHHHHHHHHHH---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 037537 384 NLEDARRLFDRMP---EHN---TVSLNSMIAGYAQ---------HGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHT 448 (677)
Q Consensus 384 ~~~~A~~~~~~~~---~~~---~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 448 (677)
..+.|..+|.+.. +-| ...|..+..++.. .....+|.++-++.++.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3566777888766 333 2233333333221 234567888888888876 66777777777777888
Q ss_pred CCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCch--hHHH
Q 037537 449 GKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAV--PYVM 525 (677)
Q Consensus 449 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~--~~~~ 525 (677)
++++.|...|+.... +.|+ ...|........-+|+.++|.+.+++. ++++|.-.. ..-.
T Consensus 352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a---------------lrLsP~~~~~~~~~~ 413 (458)
T PRK11906 352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKS---------------LQLEPRRRKAVVIKE 413 (458)
T ss_pred cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------hccCchhhHHHHHHH
Confidence 889999999999874 5776 445555555666789999999999884 345554333 2334
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 037537 526 LANIYAASGKWEEVATIRRL 545 (677)
Q Consensus 526 l~~~y~~~g~~~~a~~~~~~ 545 (677)
.++.|..++ .++|++++-+
T Consensus 414 ~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 414 CVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHcCCc-hhhhHHHHhh
Confidence 445676655 5666666543
No 244
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.79 E-value=0.66 Score=44.74 Aligned_cols=62 Identities=16% Similarity=0.341 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 472 EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.++..++..+..+|+.+.+.+.+++. ++.+|-+...|..|+.+|.+.|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~L---------------i~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERL---------------IELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHH---------------HhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45677888888999999888888766 688899999999999999999999999999998865
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.68 E-value=2.1 Score=41.70 Aligned_cols=162 Identities=9% Similarity=0.039 Sum_probs=91.4
Q ss_pred cCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH--HH--HHhccCCHHHH
Q 037537 382 CGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSV--LS--ACAHTGKVAEG 454 (677)
Q Consensus 382 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--l~--a~~~~g~~~~a 454 (677)
.|+..+|-..++++.+ .|..+|+--=.+|..+|+.+.-...+++..-. ..||...|..+ +- ++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4566666655655554 35666666666777777766666666666543 13443222222 22 22356667777
Q ss_pred HHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 037537 455 QKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAAS 533 (677)
Q Consensus 455 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~ 533 (677)
++.-++..+ +.| |.-.-.+....+--.|++.++.++..+-...... ..-.-.-.|....-.|...
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~-----------s~mlasHNyWH~Al~~iE~ 260 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ-----------SWMLASHNYWHTALFHIEG 260 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh-----------hhHHHhhhhHHHHHhhhcc
Confidence 666555543 233 3344445556666667777777776655311100 0000122455555667778
Q ss_pred CChHHHHHHHHHHHhCCCccCCcee
Q 037537 534 GKWEEVATIRRLMRDRGVQKKPGFS 558 (677)
Q Consensus 534 g~~~~a~~~~~~m~~~g~~~~~~~s 558 (677)
+.++.|+++|+.=.-+.+.++.+++
T Consensus 261 aeye~aleIyD~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 261 AEYEKALEIYDREIWKRLEKDDAVA 285 (491)
T ss_pred cchhHHHHHHHHHHHHHhhccchhh
Confidence 8999999999876666666766643
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.58 E-value=15 Score=37.28 Aligned_cols=171 Identities=12% Similarity=0.076 Sum_probs=102.4
Q ss_pred hHHHHHHHHccCCHHHHHHHHhcCCCC---Ccc----hHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037537 372 NNALVAMYSKCGNLEDARRLFDRMPEH---NTV----SLNSMIAGYAQ---HGIGMEALRLFEWMLETNIPPTNITFVSV 441 (677)
Q Consensus 372 ~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 441 (677)
.-.|+-.|....+++...++.+.+... ++. .--...-++-+ .|+.++|++++..++...-.+++.||..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 345555688899999999999988763 111 11123344556 78999999999997766668888888877
Q ss_pred HHHHhc---------cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHH
Q 037537 442 LSACAH---------TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHF 512 (677)
Q Consensus 442 l~a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 512 (677)
...|-. ....++|...+.+.- .+.|+..+--.++.++.-+|...+...-++++..+ ......++-
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~---l~~llg~kg 297 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVK---LSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHH---HHHHHHhhc
Confidence 665431 224667777666543 55676554434444555555433222212211100 000000000
Q ss_pred hccCC-CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 513 LQLEP-SNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 513 ~~l~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+++ .+-..+.++..++.-.|+.++|.+..++|...
T Consensus 298 -~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 -SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred -cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 0111 23344558889999999999999999999865
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.56 E-value=4.3 Score=34.70 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=33.4
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..+.|++++|.+.|+.+..+|-..|- ....--|+.+|-+.|++++|...+++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34567777777777777766444432 334455667777777777777766654
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.43 E-value=18 Score=36.81 Aligned_cols=172 Identities=19% Similarity=0.109 Sum_probs=91.0
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCC-Cc-chHH-----HHHHHHHh---CCChhHHHHHHHHhHhcCCCCCcccHHHHHH
Q 037537 70 VLLAAYARQLRIASARQLFDQIPQP-DL-VSYN-----TLISAYAD---CGDTESALSLFKDMREKRFDTDGFTLSGLIT 139 (677)
Q Consensus 70 ~li~~~~~~g~~~~A~~~f~~m~~~-~~-~~~~-----~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 139 (677)
.++-.|-...+++...++++.+... +. .+-+ ...-++-+ .|+.++|++++..+....-.+++.||..+=+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444588888999999999998863 21 1111 22334455 7899999999999776666677777643322
Q ss_pred HhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCCCeee---HHHHHHHHHhCCC-chH
Q 037537 140 ASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIKDEVS---WNSMVVAYGQHRE-GLE 214 (677)
Q Consensus 140 a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~~~~---~~~li~~~~~~g~-~~~ 214 (677)
. .-+....++.. |... +++|...+.+- ...||..+ +-+|+........ ..+
T Consensus 226 I----------yKD~~~~s~~~-d~~~-------------ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~e 281 (374)
T PF13281_consen 226 I----------YKDLFLESNFT-DRES-------------LDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEE 281 (374)
T ss_pred H----------HHHHHHHcCcc-chHH-------------HHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHH
Confidence 1 11111222211 2111 44444444444 22233322 2222222211111 112
Q ss_pred HHHHH---HH-HHHCCC---CCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCch
Q 037537 215 ALQLF---QE-MVSLQL---GLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNS 266 (677)
Q Consensus 215 A~~~~---~~-m~~~g~---~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 266 (677)
..++- .. ..+.|. ..|--.+.+++.++.-.|+.+.|.+..+.+.+.. +|.-
T Consensus 282 l~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W 339 (374)
T PF13281_consen 282 LRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPAW 339 (374)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccch
Confidence 22221 11 122332 2345566778888888889999999888888764 4433
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.22 E-value=13 Score=35.23 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--C----ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHH
Q 037537 266 SHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--P----DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVC 339 (677)
Q Consensus 266 ~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ 339 (677)
...|+.-+.-+-+ |+ +++|.+.|+.+.. | ...+--.++-++.+. +++++|+..+++....-..-...-|..
T Consensus 35 ~~LY~~g~~~L~~-gn-~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~-~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 35 SELYNEGLTELQK-GN-YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKN-GEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred HHHHHHHHHHHhc-CC-HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 3444444444444 77 9999999988863 2 123444566778888 999999999998877543333344554
Q ss_pred HHHHhh
Q 037537 340 VISACS 345 (677)
Q Consensus 340 ll~a~~ 345 (677)
-|.+.+
T Consensus 112 YlkgLs 117 (254)
T COG4105 112 YLKGLS 117 (254)
T ss_pred HHHHHH
Confidence 454443
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.19 E-value=6.7 Score=41.80 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=45.2
Q ss_pred HHHHccCCHHHHHHHHhcCCC-----C--CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-cc
Q 037537 377 AMYSKCGNLEDARRLFDRMPE-----H--NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACA-HT 448 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~ 448 (677)
.++...|++++|.+.|++... + ....+--+.-.+...+++++|.+.|..+.+.. ..+..+|..+..+|. ..
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l 353 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLML 353 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 444556777777777775432 1 11223334445666677777777777777653 334445554444442 34
Q ss_pred CCH-------HHHHHHHHHh
Q 037537 449 GKV-------AEGQKYFSMM 461 (677)
Q Consensus 449 g~~-------~~a~~~~~~m 461 (677)
|+. ++|.++|.+.
T Consensus 354 ~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 354 GREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred ccchhhhhhHHHHHHHHHHH
Confidence 444 4555555444
No 251
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.92 E-value=17 Score=35.68 Aligned_cols=117 Identities=14% Similarity=0.012 Sum_probs=64.3
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCChhh--------HHHHHHHHHccCChHHHHHHHhhccc------------cCh---
Q 037537 9 CVGRRDLVTGKSLHALYLKNLVPFSAYL--------SNHFILLYSKCGCLSAAHHAFNQTQH------------ANV--- 65 (677)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~ll~~~~~~g~~~~a~~~~~~~~~------------~~~--- 65 (677)
..+.|+.+.|...+.++...-...++.. |+.-...+.+..+++.|...+++..+ ++.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 3467888999988888877542233322 33333444333267666655554332 221
Q ss_pred --hHHHHHHHHHHhcCChhH---HHHHhccCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHhHhc
Q 037537 66 --FSFNVLLAAYARQLRIAS---ARQLFDQIPQ--PD-LVSYNTLISAYADCGDTESALSLFKDMREK 125 (677)
Q Consensus 66 --~~~~~li~~~~~~g~~~~---A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 125 (677)
.+...|+.+|...+..+. |.++++.+.. |+ +..+-.=+..+.+.++.+++.+.+.+|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 245556666666665443 3334444422 33 334444455555567777777777777765
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.76 E-value=6 Score=33.00 Aligned_cols=105 Identities=19% Similarity=0.109 Sum_probs=54.4
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC--hHHHHHHHHHHhhcCC
Q 037537 409 GYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE--GEHYSCMIDLLGRAGK 486 (677)
Q Consensus 409 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~ 486 (677)
+.+..|+.+.|++.|.+.+.. .+-+...||.=..++.-.|+.++|+.=+++..+.-|-+.. -..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344555566666666655552 1233455565556666666666666555555544232211 1122223345666777
Q ss_pred hHHHHHHHHhCCCCCChHHHHHHHHHhccCC
Q 037537 487 LTDAERLIEAMPFNPGSIALKAANHFLQLEP 517 (677)
Q Consensus 487 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p 517 (677)
.+.|..-|+..-.-+. ..+-+++.+++|
T Consensus 131 dd~AR~DFe~AA~LGS---~FAr~QLV~lNP 158 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS---KFAREQLVELNP 158 (175)
T ss_pred hHHHHHhHHHHHHhCC---HHHHHHHHhcCh
Confidence 7777777765532222 233456667777
No 253
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.76 E-value=30 Score=38.16 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=67.2
Q ss_pred HHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 037537 102 LISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLD 181 (677)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 181 (677)
=|..+.+.+.+++|++.-+.-.. ..|-. .-..++...|+.+.-.|+++
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~------------------------------~i~kv~~~yI~HLl~~~~y~ 409 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERF------------------------------VIKKVGKTYIDHLLFEGKYD 409 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--Ccccc------------------------------chHHHHHHHHHHHHhcchHH
Confidence 36677788899999887765432 22211 01235577788888889999
Q ss_pred HHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHcc
Q 037537 182 EAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTS 243 (677)
Q Consensus 182 ~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 243 (677)
+|-.+.-.| ...+..-|---+.-+...++......+ +.......+...|-.+|..+..
T Consensus 410 ~Aas~~p~m-~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 410 EAASLCPKM-LGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHhhhHHH-hcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 998888888 656667777777777777665543332 2222222345566666666654
No 254
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.64 E-value=0.53 Score=29.43 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 522 PYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 522 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
+|..|.++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999854
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.55 E-value=3.1 Score=39.66 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=65.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHH
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETNIPPT---NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMI 478 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 478 (677)
|+.-+. +.+.|++.+|...|...++.. +-+ ...+-=|..++...|++++|..+|..+.+.|+-.|. ++.+--|.
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 554443 345666888888888887753 211 123444667778888888888888888887666665 46777778
Q ss_pred HHHhhcCChHHHHHHHHhCC
Q 037537 479 DLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~ 498 (677)
....+.|+.++|...+++..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 88888888888888887763
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.41 E-value=2.5 Score=43.70 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=61.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCCC-CCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 037537 475 SCMIDLLGRAGKLTDAERLIEAMPF-NPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQK 553 (677)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~ 553 (677)
..+...+-+.|+.+||.+.+++|.. .|.. ++......|+..+...+++.++..++.+-.+....+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~--------------~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNL--------------DNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCcc--------------chhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 3455666677888888888877731 1111 234567778888888888888888887765544444
Q ss_pred CCceeEEEECCEEEEEEeCCCCCCCH-------HHHHHHHHHHHHHHHHcCCccc
Q 037537 554 KPGFSWIEVKKQMHVFVAEDGSHPMI-------KEIHNYLEEMSRKMKQAGYVPD 601 (677)
Q Consensus 554 ~~~~s~~~~~~~~~~~~~~~~~~~~~-------~~i~~~l~~l~~~~~~~g~~pd 601 (677)
...++|....-+. -.++|+..|+. ......++-+.+.++..+.+|+
T Consensus 329 SAti~YTaALLka--Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 329 SATICYTAALLKA--RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hHHHHHHHHHHHH--HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 4433332110000 00122222211 1122345666777777888887
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.39 E-value=16 Score=34.63 Aligned_cols=157 Identities=15% Similarity=0.193 Sum_probs=99.1
Q ss_pred HHccCCHHHHHHHHhcCCCCC---c---chHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHh---cc
Q 037537 379 YSKCGNLEDARRLFDRMPEHN---T---VSLNSMIAGYAQHGIGMEALRLFEWMLETN-IPPTNITFVSVLSACA---HT 448 (677)
Q Consensus 379 y~k~g~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~---~~ 448 (677)
-.+.|++++|.+.|+.+.... + .+--.++-++-+.+++++|+..+++....- -.|| .-|...|.+.+ ..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccC
Confidence 346799999999999987532 2 234445677788999999999999988742 2333 33444444433 22
Q ss_pred ----CCHH---HHHHHHHHhHHhcC---CccChH------------HHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHH
Q 037537 449 ----GKVA---EGQKYFSMMKDMFG---FEPEGE------------HYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIAL 506 (677)
Q Consensus 449 ----g~~~---~a~~~~~~m~~~~~---~~p~~~------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 506 (677)
.+.. +|..-|+.++++|- ..||.. +-..+.+-|.+.|.+..|..-+++|..+...
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~--- 199 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD--- 199 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc---
Confidence 2333 44555555555421 122322 1223445688889988888888877432111
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 507 KAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 507 ~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+....++-.|..+|.+.|-.++|.+.-+-+..
T Consensus 200 ---------t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 200 ---------TSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ---------ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 122334577788999999999999988776654
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=89.99 E-value=12 Score=38.91 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=92.7
Q ss_pred chH--HHHHHHHHHcC-----ChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHh---------ccCCHHHHHHHHHHhH
Q 037537 401 VSL--NSMIAGYAQHG-----IGMEALRLFEWMLE-TNIPPTN-ITFVSVLSACA---------HTGKVAEGQKYFSMMK 462 (677)
Q Consensus 401 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~-~g~~p~~-~t~~~ll~a~~---------~~g~~~~a~~~~~~m~ 462 (677)
..| ..++.|....- ..+.|+.+|.+... +.+.|+- ..|..+...+. ...+..+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66666665522 34678899999982 2356774 33333322211 1334566777777776
Q ss_pred HhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHH
Q 037537 463 DMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVAT 541 (677)
Q Consensus 463 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 541 (677)
+. .| |......+..+++-.|+++.|..+|++. +.++|+.+.+|........-+|+.++|.+
T Consensus 332 el---d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA---------------~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 332 DI---TTVDGKILAIMGLITGLSGQAKVSHILFEQA---------------KIHSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred hc---CCCCHHHHHHHHHHHHhhcchhhHHHHHHHH---------------hhcCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 53 44 5666677777778888899999999987 47889999999999999999999999999
Q ss_pred HHHHHHhC
Q 037537 542 IRRLMRDR 549 (677)
Q Consensus 542 ~~~~m~~~ 549 (677)
.+++..+.
T Consensus 394 ~i~~alrL 401 (458)
T PRK11906 394 CIDKSLQL 401 (458)
T ss_pred HHHHHhcc
Confidence 99885443
No 259
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=89.66 E-value=1.3 Score=44.21 Aligned_cols=50 Identities=10% Similarity=-0.092 Sum_probs=40.4
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHccCChHHHHHHHhh
Q 037537 9 CVGRRDLVTGKSLHALYLKNLVPFSA----YLSNHFILLYSKCGCLSAAHHAFNQ 59 (677)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~ 59 (677)
..+.|+.+.+..+|+..++.|. .|. .+|..|-++|.-.+++++|.+.|..
T Consensus 27 Lck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 4678999999999999999983 333 4577777888888999999998764
No 260
>PRK09687 putative lyase; Provisional
Probab=89.47 E-value=23 Score=34.83 Aligned_cols=72 Identities=8% Similarity=0.017 Sum_probs=35.7
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
..+-..-+.++++.|+.+-...+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||..+-...+.+|
T Consensus 206 ~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 206 EEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 3344455555566665433333333333333 233455666666653 566666666653 34555544444444
No 261
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.40 E-value=27 Score=35.53 Aligned_cols=87 Identities=14% Similarity=0.016 Sum_probs=61.1
Q ss_pred HHHHHccCCHHHHHHHHhcCCC-------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 037537 376 VAMYSKCGNLEDARRLFDRMPE-------HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAH 447 (677)
Q Consensus 376 i~~y~k~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 447 (677)
.+...+.|++.+|.+.|.+... ++...|-.......+.|+.++|+.--++..+ +.|. ...|..-..++.-
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHH
Confidence 4556789999999999988764 2334566666777889999999998888876 3332 1233333344556
Q ss_pred cCCHHHHHHHHHHhHHh
Q 037537 448 TGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~ 464 (677)
.+.+++|.+.++...+.
T Consensus 334 le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 67889999988888765
No 262
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.28 E-value=34 Score=36.57 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=105.1
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPEHN---TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
...|+..++.-.+.|+.+...-+|++...|- ...|--.+.-....|+.+-|-.++....+--++-.+.+-..-..-+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 5567777888888899999998888876542 2235444444444588888877777666543332222222222234
Q ss_pred hccCCHHHHHHHHHHhHHhcCCccCh-HHHHHHHHHHhhcCChHHHH---HHHHhCC---CCCChHH-------------
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEPEG-EHYSCMIDLLGRAGKLTDAE---RLIEAMP---FNPGSIA------------- 505 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m~---~~~~~~~------------- 505 (677)
-..|+.+.|..+++.+.+. . |+. ..-.--+....|.|..+.+. +++.... ..+....
T Consensus 377 e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 5678999999999999886 3 553 33333456677888888887 5554431 1111111
Q ss_pred -------HHHHHHHhccCCCCchhHHHHHHHHHhcCChH
Q 037537 506 -------LKAANHFLQLEPSNAVPYVMLANIYAASGKWE 537 (677)
Q Consensus 506 -------~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~ 537 (677)
..+..++.+..|++...|..+++.....+-..
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcch
Confidence 44555566788889999999999888776433
No 263
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.11 E-value=9.1 Score=32.08 Aligned_cols=84 Identities=13% Similarity=0.227 Sum_probs=43.6
Q ss_pred ccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037537 381 KCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSM 460 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 460 (677)
.||++......+-.+.. +....+.-+.....+|+-++-.++++++.+.+ .|++..+..+.+||.+.|+..++.+++..
T Consensus 68 ~C~NlKrVi~C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp G-S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34554444444433322 22233445566666777777667777766533 66666677777777777777777777777
Q ss_pred hHHhcCC
Q 037537 461 MKDMFGF 467 (677)
Q Consensus 461 m~~~~~~ 467 (677)
+-+. |+
T Consensus 146 ACek-G~ 151 (161)
T PF09205_consen 146 ACEK-GL 151 (161)
T ss_dssp HHHT-T-
T ss_pred HHHh-ch
Confidence 7665 54
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.83 E-value=7.7 Score=41.36 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=102.5
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHhC-CCCch-----hhHHHHHHHHHHc---CCCHHHHHHHHhhCCC--CChhhH
Q 037537 233 TLASILTAFTSLEDLVGGLQFHAHLIKSG-FHQNS-----HIGSGLIDLYAKC---SGDMRDCMKVFEEIPQ--PDLVLW 301 (677)
Q Consensus 233 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~-----~~~~~li~~y~~~---g~~~~~A~~~f~~~~~--~~~~~~ 301 (677)
.+..+++..+-.||-+.|.+.+....+.+ +.... -.|...+..++.. +...+.|.++++.+.+ |+...|
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf 269 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF 269 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence 34556666677788888888888776643 21111 2233333333332 3348889999999876 888888
Q ss_pred HHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHc
Q 037537 302 NTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSK 381 (677)
Q Consensus 302 ~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k 381 (677)
...-.-+.+..|+.++|++.|++..... .+ +. +++ ...+--+.-.+.-
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q--~~---~~---------------Ql~------------~l~~~El~w~~~~ 317 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQ--SE---WK---------------QLH------------HLCYFELAWCHMF 317 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccch--hh---HH---------------hHH------------HHHHHHHHHHHHH
Confidence 7776666655599999999998765321 11 10 111 1122334455667
Q ss_pred cCCHHHHHHHHhcCCCCCcc---hHHHH-HHHHHHcCCh-------HHHHHHHHHHHH
Q 037537 382 CGNLEDARRLFDRMPEHNTV---SLNSM-IAGYAQHGIG-------MEALRLFEWMLE 428 (677)
Q Consensus 382 ~g~~~~A~~~~~~~~~~~~~---~~~~l-i~~~~~~g~~-------~~A~~l~~~m~~ 428 (677)
.+++++|.+.|..+.+.+.. .|.-+ ..++...|+. ++|.++|.+...
T Consensus 318 ~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 89999999999999874332 23222 2344567777 888888887643
No 265
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.55 E-value=45 Score=37.06 Aligned_cols=109 Identities=21% Similarity=0.253 Sum_probs=51.2
Q ss_pred HHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHH
Q 037537 375 LVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIP-PTNITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 375 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~ 453 (677)
...-....|++++|..+|+.. |+++.+++++.+.+..-+. ++. .....-...+-...
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La------------------~~~d~vl~lln~~Ls~~l~~~~~----~~~~~s~~~~l~~l 477 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLA------------------EEYDKVLSLLNRLLSQVLSQPSS----SSLSDSERERLIEL 477 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHT------------------T-HHHHHHHHHHHHHHHHHCSST----SSSSSTTTTSHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH------------------hhHHHHHHHHHHHHHHHHcCccc----cccccchhhhHHHH
Confidence 344455678888888877665 4566677666665542100 000 00000001112333
Q ss_pred HHHHHHHhHHhcC----Ccc-ChHHHHHHHHH-----HhhcCChHHHHHHHHhCCCCCChHH
Q 037537 454 GQKYFSMMKDMFG----FEP-EGEHYSCMIDL-----LGRAGKLTDAERLIEAMPFNPGSIA 505 (677)
Q Consensus 454 a~~~~~~m~~~~~----~~p-~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~~~ 505 (677)
|..+.+....... +.+ ...++..|.+. +...|++++|++.++++..-|....
T Consensus 478 a~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP~~~~ 539 (613)
T PF04097_consen 478 AKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIPLDPS 539 (613)
T ss_dssp HHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-S-HH
T ss_pred HHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCCHH
Confidence 4444333322100 111 23445544443 4688999999999999977775443
No 266
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.53 E-value=2.4 Score=41.32 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=46.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCCh
Q 037537 409 GYAQHGIGMEALRLFEWMLETNIPP-TNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKL 487 (677)
Q Consensus 409 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 487 (677)
-|.++|.+++|+..|..-+. +.| |.+++..=..+|.+...+..|..=-...... -...+.+|.|.|.-
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHHHH
Confidence 35556666666666665554 344 5666665556666655555444333332211 12335566665555
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHhccCCCC
Q 037537 488 TDAERLIEAMPFNPGSIALKAANHFLQLEPSN 519 (677)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~ 519 (677)
.+++..+.+.. +-++.+++++|++
T Consensus 175 R~~Lg~~~EAK--------kD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 175 RESLGNNMEAK--------KDCETVLALEPKN 198 (536)
T ss_pred HHHHhhHHHHH--------HhHHHHHhhCccc
Confidence 55544444442 2234456666654
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.38 E-value=1.7 Score=28.59 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLET 429 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 429 (677)
+|..+...|...|++++|.++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566677777777777777777777774
No 268
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.58 E-value=0.038 Score=48.21 Aligned_cols=81 Identities=11% Similarity=0.080 Sum_probs=53.6
Q ss_pred HHHHHHccCChHHHHHHHhhccc----cChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHH
Q 037537 40 FILLYSKCGCLSAAHHAFNQTQH----ANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESA 115 (677)
Q Consensus 40 ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 115 (677)
+++.+.+.+.+....+.++.+.. .+....+.++..|++.++.+...++++... ..-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHHHH
Confidence 45555566666666666666553 457778888888988887788888777332 23445667777777777777
Q ss_pred HHHHHHhH
Q 037537 116 LSLFKDMR 123 (677)
Q Consensus 116 ~~~~~~m~ 123 (677)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77777654
No 269
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.52 E-value=2.2 Score=36.57 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=49.9
Q ss_pred HHHHHHHHHH---hhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 472 EHYSCMIDLL---GRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 472 ~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+.+.|++.. .+.++++++..+++.|. -+.|+.+..-..-.+.+...|+|.+|.++++...+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---------------vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALR---------------VLRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 3445555443 35789999999998883 45577777777778889999999999999999887
Q ss_pred CCC
Q 037537 549 RGV 551 (677)
Q Consensus 549 ~g~ 551 (677)
.+.
T Consensus 73 ~~~ 75 (153)
T TIGR02561 73 SAG 75 (153)
T ss_pred cCC
Confidence 664
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.46 E-value=1.3 Score=27.68 Aligned_cols=26 Identities=31% Similarity=0.347 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWML 427 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~ 427 (677)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777744
No 271
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.24 E-value=5 Score=38.28 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=75.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCC-CCChHHHHHHHHHhc
Q 037537 437 TFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPF-NPGSIALKAANHFLQ 514 (677)
Q Consensus 437 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~ 514 (677)
.|+.-+..+ ..|++..|...|...++.|--.+ ....+--|...+...|++++|..+|..+.. -|+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------------ 210 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------------ 210 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC------------
Confidence 566666554 67789999999999998642111 123344478999999999999999987732 232
Q ss_pred cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 515 LEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 515 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.|+-+.++.-|.....+.|+.++|..++++..++
T Consensus 211 -s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 211 -SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred -CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2566788999999999999999999999998764
No 272
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.21 E-value=16 Score=31.52 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=54.7
Q ss_pred ccCCHHHHHHHHHHhHHhcCCccChH-HHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHH
Q 037537 447 HTGKVAEGQKYFSMMKDMFGFEPEGE-HYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVM 525 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~ 525 (677)
..++.+++..+++.|. -+.|+.. .-..-...+.+.|+|.+|..+|++....+.......+-.++-+.-.....|..
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~ 98 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHV 98 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHH
Confidence 3667777777777765 3455422 22222344566777777777777775433221111111111121122235777
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 037537 526 LANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 526 l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
........|.-.++..+.+.+.
T Consensus 99 ~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 99 HADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHhCCCHhHHHHHHHHh
Confidence 7777778888888888888776
No 273
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.17 E-value=12 Score=36.23 Aligned_cols=151 Identities=13% Similarity=0.079 Sum_probs=88.8
Q ss_pred HHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037537 379 YSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQ 455 (677)
Q Consensus 379 y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 455 (677)
....|++.+|...|+.... .+...--.|+.+|...|+.+.|..++..+-..--.........-|....+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 3456778888877776543 2344556677888888888888888887654322222233223334444444444444
Q ss_pred HHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 037537 456 KYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASG 534 (677)
Q Consensus 456 ~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g 534 (677)
.+-+.... .| |...--.+.+.|.-.|+.++|.+.+=.+..+. ..-.|...-..|+..+..-|
T Consensus 224 ~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d-------------~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRD-------------RGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------------ccccCcHHHHHHHHHHHhcC
Confidence 44444443 35 67777788888999999999988775542110 11134455556666666555
Q ss_pred ChH-HHHHHHHHH
Q 037537 535 KWE-EVATIRRLM 546 (677)
Q Consensus 535 ~~~-~a~~~~~~m 546 (677)
.-+ .+...+++|
T Consensus 287 ~~Dp~~~~~RRkL 299 (304)
T COG3118 287 PADPLVLAYRRKL 299 (304)
T ss_pred CCCHHHHHHHHHH
Confidence 322 344445444
No 274
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.64 E-value=27 Score=33.90 Aligned_cols=142 Identities=18% Similarity=0.279 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhc-c-CCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHH
Q 037537 416 GMEALRLFEWMLE-TNIPPTNITFVSVLSACAH-T-GKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAER 492 (677)
Q Consensus 416 ~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~-~-g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (677)
..+|+.+|+...- ..+--|..+...+++.... . .....-.++.+.+...++-.++..+-.++++.+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4566666663211 2244455566666665543 1 13344445566666666788899999999999999999999999
Q ss_pred HHHhCCCC--CChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEE
Q 037537 493 LIEAMPFN--PGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFV 570 (677)
Q Consensus 493 ~~~~m~~~--~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~ 570 (677)
+++..... |. .|...|...+..-...|+.. +.+++...|. .-||--.+
T Consensus 224 fW~~~~~~~~~~---------------~D~rpW~~FI~li~~sgD~~----~~~kiI~~Gh-----LLwikR~~------ 273 (292)
T PF13929_consen 224 FWEQCIPNSVPG---------------NDPRPWAEFIKLIVESGDQE----VMRKIIDDGH-----LLWIKRNN------ 273 (292)
T ss_pred HHHHhcccCCCC---------------CCCchHHHHHHHHHHcCCHH----HHHHHhhCCC-----eEEeeecC------
Confidence 99876322 22 47788999999999999954 4566666663 24543111
Q ss_pred eCCCCCCCHHHHHHHHHHHHHH
Q 037537 571 AEDGSHPMIKEIHNYLEEMSRK 592 (677)
Q Consensus 571 ~~~~~~~~~~~i~~~l~~l~~~ 592 (677)
-+-.+++.+.|.+|++.
T Consensus 274 -----V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 274 -----VDVTDELRSQLSELFKK 290 (292)
T ss_pred -----CcCCHHHHHHHHHHHHh
Confidence 12345566777777664
No 275
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=86.48 E-value=27 Score=32.23 Aligned_cols=161 Identities=20% Similarity=0.213 Sum_probs=75.4
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC--CCc-chHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE--HNT-VSLNSMIA-GYAQHGIGMEALRLFEWMLETNIPP----TNITFVS 440 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ 440 (677)
...+..+...+...++.+.+...+..... ++. ..+..... .+...|+.+.|...|.+... ..| ....+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 172 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHH
Confidence 33444444555555555555555555443 111 12222222 45556666666666666543 222 1222333
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCC
Q 037537 441 VLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSN 519 (677)
Q Consensus 441 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~ 519 (677)
....+...++.+++...+...... ... ....+..+...+...+.+++|...+... +...|..
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---------------~~~~~~~ 235 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKA---------------LELDPDN 235 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHH---------------HhhCccc
Confidence 333344555556666555555542 112 2444555555555555555555555544 2333333
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 520 AVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 520 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
...+..+...+...|.++++...+.+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 236 AEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444555555555554433
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.45 E-value=29 Score=32.63 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=90.7
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCH---HHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNI--PPTN---ITFVSVLS 443 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~---~t~~~ll~ 443 (677)
+..++--..+|..+|..+.|-..+++..+ ...+-++++|+++|++...--. .-+. .-+..+-.
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 45667778889999998888777665422 1234567888888877654211 1111 12333444
Q ss_pred HHhccCCHHHHHHHHHHhHHh---cCCccCh-HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCC
Q 037537 444 ACAHTGKVAEGQKYFSMMKDM---FGFEPEG-EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSN 519 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~~~---~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~ 519 (677)
.+.+...+++|-..|.+-... +.-.|+. ..|.+.|-.|.-..++..|.+.++....-|+ -+.|++
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~-----------f~~sed 227 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA-----------FLKSED 227 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc-----------ccChHH
Confidence 555666777766555433211 0111222 2355556667777899999999988543333 234567
Q ss_pred chhHHHHHHHHHhcCChHHHHHHH
Q 037537 520 AVPYVMLANIYAASGKWEEVATIR 543 (677)
Q Consensus 520 ~~~~~~l~~~y~~~g~~~~a~~~~ 543 (677)
..+...|+.+| ..|+.+++.++.
T Consensus 228 ~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 228 SRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHh-ccCCHHHHHHHH
Confidence 77788888887 457777776554
No 277
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.41 E-value=13 Score=33.56 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC------hHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN--ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE------GEH 473 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------~~~ 473 (677)
.+..+..-|.+.|+.++|++.|.++.+....|.. ..+..+|..+...+++..+..+..+......-..| ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3555666677777777777777777766555543 34566677777777777777776666543111111 123
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCCC
Q 037537 474 YSCMIDLLGRAGKLTDAERLIEAMPF 499 (677)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (677)
|..|. +...|++.+|-+.|-+...
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccCc
Confidence 33332 2356889998888877643
No 278
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.39 E-value=36 Score=37.83 Aligned_cols=214 Identities=15% Similarity=0.082 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCC-------chHHHHHHHHHHHCCCCCCHhH--
Q 037537 165 SVNNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHRE-------GLEALQLFQEMVSLQLGLDMYT-- 233 (677)
Q Consensus 165 ~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~pd~~t-- 233 (677)
.+| ++|-.+.|||++++|.++..+. ........+-..+..|..+.+ -+....-|++........|++-
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~A 191 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRA 191 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHH
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 344 4677888999999999999333 133444567777888877533 2355566666665444335432
Q ss_pred HHHHHHHHccC-CC-------hHHHHHHHHHHHHhCCCCc-----hhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhh
Q 037537 234 LASILTAFTSL-ED-------LVGGLQFHAHLIKSGFHQN-----SHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVL 300 (677)
Q Consensus 234 ~~~ll~a~~~~-~~-------~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~ 300 (677)
.-.+|..|--. .. .+.=..+.=.+++..-..+ ..++..|=....+-|. +.|.. ..+...
T Consensus 192 vY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge------~~F~~--~~~p~~ 263 (613)
T PF04097_consen 192 VYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGE------SHFNA--GSNPLL 263 (613)
T ss_dssp HHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-G------GGCTT--------
T ss_pred HHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhch------hhccc--chhHHH
Confidence 22233333221 11 2222222222222221111 1222222111111111 11111 112222
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHH-hhcccCccchhHHHHHH
Q 037537 301 WNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIK-IEIRSNRISVNNALVAM 378 (677)
Q Consensus 301 ~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~~~li~~ 378 (677)
| ...+.-. |+++.|++++.+ ..+...|.+.+...|..+.-+. .+... ..+.. ..-++. ..-+..||..
T Consensus 264 Y---f~~LlLt-gqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~-~ln~arLI~~ 333 (613)
T PF04097_consen 264 Y---FQVLLLT-GQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPP-PLNFARLIGQ 333 (613)
T ss_dssp H---HHHHHHT-T-HHHHHHHHHT----T-HHHHHHHHHHHHHTT----------------------------HHHHHHH
T ss_pred H---HHHHHHH-hhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCC-CcCHHHHHHH
Confidence 2 2233335 899999998876 3345667777777777666555 22222 11111 111111 2335677888
Q ss_pred HHc---cCCHHHHHHHHhcCCC
Q 037537 379 YSK---CGNLEDARRLFDRMPE 397 (677)
Q Consensus 379 y~k---~g~~~~A~~~~~~~~~ 397 (677)
|.+ ..+..+|.+.|--+..
T Consensus 334 Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 334 YTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 876 4577888888766654
No 279
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.15 E-value=30 Score=32.53 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHh
Q 037537 268 IGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLN 326 (677)
Q Consensus 268 ~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~ 326 (677)
.++--..+|..+|. .+.|-..+++.-. ...+ .++++|+++|.+-.
T Consensus 93 l~eKAs~lY~E~Gs-pdtAAmaleKAak------------~len-v~Pd~AlqlYqral 137 (308)
T KOG1585|consen 93 LYEKASELYVECGS-PDTAAMALEKAAK------------ALEN-VKPDDALQLYQRAL 137 (308)
T ss_pred HHHHHHHHHHHhCC-cchHHHHHHHHHH------------Hhhc-CCHHHHHHHHHHHH
Confidence 44455566677666 5555444443211 1123 55677777776644
No 280
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.04 E-value=5.9 Score=41.87 Aligned_cols=150 Identities=22% Similarity=0.177 Sum_probs=99.3
Q ss_pred hcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHH
Q 037537 77 RQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAI 156 (677)
Q Consensus 77 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~ 156 (677)
-.|+++.|..++-.++++ .-+.++..+-+.|..++|+++- ||+.
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s---------~D~d------------------------ 641 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS---------TDPD------------------------ 641 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC---------CChh------------------------
Confidence 346777777766665532 3445566666777777776552 2211
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHH
Q 037537 157 YCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLAS 236 (677)
Q Consensus 157 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 236 (677)
.-.....+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|..... |..
T Consensus 642 ------------~rFelal~lgrl~iA~~la~e~---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~ 697 (794)
T KOG0276|consen 642 ------------QRFELALKLGRLDIAFDLAVEA---NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGS 697 (794)
T ss_pred ------------hhhhhhhhcCcHHHHHHHHHhh---cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhh
Confidence 1123445679999999988776 4566799999999999999999999987654 566
Q ss_pred HHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhC
Q 037537 237 ILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEI 293 (677)
Q Consensus 237 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~ 293 (677)
|+-.+...|+-+....+-....+.|. .| .-.-+|...|+ ++++.+++.+-
T Consensus 698 LlLl~t~~g~~~~l~~la~~~~~~g~-~N-----~AF~~~~l~g~-~~~C~~lLi~t 747 (794)
T KOG0276|consen 698 LLLLYTSSGNAEGLAVLASLAKKQGK-NN-----LAFLAYFLSGD-YEECLELLIST 747 (794)
T ss_pred hhhhhhhcCChhHHHHHHHHHHhhcc-cc-----hHHHHHHHcCC-HHHHHHHHHhc
Confidence 77777777877766666666666652 22 22234555577 77777776654
No 281
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=86.02 E-value=5.9 Score=33.01 Aligned_cols=88 Identities=19% Similarity=0.165 Sum_probs=67.9
Q ss_pred HHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCC
Q 037537 377 AMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN---ITFVSVLSACAHTGK 450 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~ 450 (677)
-+.+..|+++.|.+.|.+... .+...||.-..++.-+|+.++|++=+++.++..-.-.. ..|..=...|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 356789999999999987653 57788999999999999999999999998874212121 234444445677899
Q ss_pred HHHHHHHHHHhHHh
Q 037537 451 VAEGQKYFSMMKDM 464 (677)
Q Consensus 451 ~~~a~~~~~~m~~~ 464 (677)
.+.|+.=|+...+.
T Consensus 131 dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 131 DDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHhHHHHHHh
Confidence 99999999887765
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.53 E-value=7.5 Score=37.67 Aligned_cols=60 Identities=17% Similarity=0.306 Sum_probs=44.6
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLE 428 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 428 (677)
..++..++..+..+|+.+.+...++++.. -|...|..++.+|.+.|+...|+..|+++.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 55677778888888888887777777654 2555778888888888888888877777655
No 283
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.50 E-value=56 Score=35.02 Aligned_cols=114 Identities=13% Similarity=0.117 Sum_probs=75.5
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHH-hcCChhHHHH
Q 037537 11 GRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYA-RQLRIASARQ 86 (677)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~-~~g~~~~A~~ 86 (677)
+....+.+..+++.++..- |.----|......=.+.|..+.+..+|++... .....|...+.... ..|+.+..++
T Consensus 57 ~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 57 SIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred chhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3334455555566655432 32233444455555678888899999988777 33445555555443 4578888888
Q ss_pred HhccCCC------CCcchHHHHHHHHHhCCChhHHHHHHHHhHhc
Q 037537 87 LFDQIPQ------PDLVSYNTLISAYADCGDTESALSLFKDMREK 125 (677)
Q Consensus 87 ~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 125 (677)
.|+.... ....-|...|..-..++++.....+|++.++.
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 8877654 34556888888888888999999999998764
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.27 E-value=4 Score=35.66 Aligned_cols=65 Identities=25% Similarity=0.400 Sum_probs=48.4
Q ss_pred hHHHHHHHHHH---hhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 471 GEHYSCMIDLL---GRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 471 ~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
..+.+.|++.+ .+.++.+++..+++.+. -+.|..+..-..-.+.+...|+|.+|.++++.+.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALr---------------vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALR---------------VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHH---------------HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34455555544 46678888888888773 4567777777777888889999999999999987
Q ss_pred hCC
Q 037537 548 DRG 550 (677)
Q Consensus 548 ~~g 550 (677)
+.+
T Consensus 72 ~~~ 74 (160)
T PF09613_consen 72 ERA 74 (160)
T ss_pred ccC
Confidence 655
No 285
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=84.74 E-value=5.4 Score=34.16 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=50.6
Q ss_pred HHHccCCHHHHHHHHhcCCCC------CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccC
Q 037537 378 MYSKCGNLEDARRLFDRMPEH------NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT--NITFVSVLSACAHTG 449 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g 449 (677)
...+.|++++|.+.|+.+..+ ....--.++.+|.+.|++++|...+++.++. .|+ .+-|...+.++++-.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL--hP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL--HPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCCCccHHHHHHHHHHHH
Confidence 345679999999999988752 2234556788999999999999999999985 444 245666666655443
No 286
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.61 E-value=7.5 Score=30.51 Aligned_cols=61 Identities=20% Similarity=0.326 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHH
Q 037537 417 MEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID 479 (677)
Q Consensus 417 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 479 (677)
-++.+-++.+....+.|++....+.|.||.+.+++..|.++|+..+.+.| .+...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 35556667777778899999999999999999999999999998886533 24556776654
No 287
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.54 E-value=29 Score=30.85 Aligned_cols=120 Identities=14% Similarity=0.126 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccChhH-HHHHHHHHHhc-CChhHHHHHhccCCCCCc
Q 037537 19 KSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFS-FNVLLAAYARQ-LRIASARQLFDQIPQPDL 96 (677)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~li~~~~~~-g~~~~A~~~f~~m~~~~~ 96 (677)
.+....+.+.+++|+...+..+++.+.+.|.+....++...-.-+|... .-.|++.-.+. .-..-|...+.++ .
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL----~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL----G 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh----h
Confidence 4556667778999999999999999999999998888877555444443 33333322211 0123344444443 3
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh
Q 037537 97 VSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC 146 (677)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 146 (677)
..+..++..+...|++-+|+++.+..... +......++.+....++
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D 135 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSND 135 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCC
Confidence 35777888999999999999998875332 22233445555554444
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.53 E-value=50 Score=33.58 Aligned_cols=50 Identities=10% Similarity=0.040 Sum_probs=26.4
Q ss_pred HHHHhcCChhHHHHHHhhcCCC--CCeeeHHHHHHHHHhCCCchHHHHHHHHHHH
Q 037537 172 TCYSRNGFLDEAKRVFYEMGEI--KDEVSWNSMVVAYGQHREGLEALQLFQEMVS 224 (677)
Q Consensus 172 ~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 224 (677)
.+..+.|+++...+..... .. ++...+.++... +.++++++....+....
T Consensus 6 eaaWrl~~Wd~l~~~~~~~-~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 6 EAAWRLGDWDLLEEYLSQS-NEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHhcCChhhHHHHHhhc-cCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 4556667777755555555 22 222233333322 56666666666655543
No 289
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.36 E-value=2 Score=26.15 Aligned_cols=27 Identities=30% Similarity=0.307 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLE 428 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 428 (677)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 577778888888888888888888877
No 290
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.24 E-value=7.3 Score=30.90 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHH
Q 037537 418 EALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID 479 (677)
Q Consensus 418 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 479 (677)
+...-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455566666778899999999999999999999999999999987644 33447877765
No 291
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.90 E-value=31 Score=30.68 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=25.7
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHH
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFE 424 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 424 (677)
..+++.+...|++-+|.+........+.+.-..++.+-.+.++..-=..+|+
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 4445555556666666666655444333333444555444444443333333
No 292
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=83.59 E-value=36 Score=31.29 Aligned_cols=208 Identities=17% Similarity=0.184 Sum_probs=119.0
Q ss_pred HHHHHHHHhhCCC--C---ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhc-CCCCCcchHHHHHHHhhccC-hhHHHHH
Q 037537 283 MRDCMKVFEEIPQ--P---DLVLWNTMISGYSQKEEYSDQALGCFKKLNRV-GYHPDDCSFVCVISACSNLS-PSLGKQI 355 (677)
Q Consensus 283 ~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~-~~~~~~i 355 (677)
...+...+..... + ....+......+... +....+...+...... ........+..........+ ...+...
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKL-GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHc-ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4555555444432 2 235566666667767 7778888777776643 11222222322233333333 4444444
Q ss_pred HHHHHHhhcccCccchhHHHHH-HHHccCCHHHHHHHHhcCCCCCc------chHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037537 356 HALTIKIEIRSNRISVNNALVA-MYSKCGNLEDARRLFDRMPEHNT------VSLNSMIAGYAQHGIGMEALRLFEWMLE 428 (677)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~li~-~y~k~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 428 (677)
+.........+. ........ .|...|+++.|...|......+. ..+......+...++.++|+..+.+...
T Consensus 118 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDPD--LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCcc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 444444322221 12222223 67888888888888887643221 1233333345667888888888888887
Q ss_pred CCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 429 TNIPP-TNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 429 ~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.. +. ....+..+...+...+..+.+...+...... .|+ ...+..+...+...|.++++...+...
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL---DPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh---CcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 43 33 3567777777777888888888888887753 443 344444444444666777777777655
No 293
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.10 E-value=38 Score=32.78 Aligned_cols=58 Identities=19% Similarity=0.076 Sum_probs=49.0
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 475 SCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
+.....|..+|.+.+|.++.++. +.++|-+...|-.|++.|+..|+--+|.+-+++|.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~---------------ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRA---------------LTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHH---------------hhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 33446788999999999998876 57888899999999999999999888888777774
No 294
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=83.07 E-value=21 Score=35.33 Aligned_cols=27 Identities=11% Similarity=0.395 Sum_probs=18.5
Q ss_pred hhHHHHHHHHhHhcCCCCCcccHHHHH
Q 037537 112 TESALSLFKDMREKRFDTDGFTLSGLI 138 (677)
Q Consensus 112 ~~~A~~~~~~m~~~g~~p~~~t~~~ll 138 (677)
+++.+.+++.|.+.|++-+.++|.+.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~ 104 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAAL 104 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHH
Confidence 345556777888888887777775533
No 295
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.04 E-value=65 Score=33.84 Aligned_cols=142 Identities=11% Similarity=0.129 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLL 481 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 481 (677)
..-+++..+.++-...-...+-.+|..- ..+...|..++..|... .-++-..+|+++.+- .+ -|+..-..|++.|
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~-df-nDvv~~ReLa~~y 142 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEY-DF-NDVVIGRELADKY 142 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh-cc-hhHHHHHHHHHHH
Confidence 3445566666666666666666677663 34556666666666655 345555666666543 32 2444445556656
Q ss_pred hhcCChHHHHHHHHhC-----CCCCChHHHHHHHHHhccCCCCch--------------------hHHHHHHHHHhcCCh
Q 037537 482 GRAGKLTDAERLIEAM-----PFNPGSIALKAANHFLQLEPSNAV--------------------PYVMLANIYAASGKW 536 (677)
Q Consensus 482 ~~~g~~~~A~~~~~~m-----~~~~~~~~~~~~~~l~~l~p~~~~--------------------~~~~l~~~y~~~g~~ 536 (677)
-+ ++.+.+..+|.++ +.+.+..+.+..+++.++-|+|-. .+.-+-.-|....+|
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 55 6666666666553 334444455555565554444332 233344567788899
Q ss_pred HHHHHHHHHHHhC
Q 037537 537 EEVATIRRLMRDR 549 (677)
Q Consensus 537 ~~a~~~~~~m~~~ 549 (677)
++|+++.+-+.+.
T Consensus 222 ~eai~Ilk~il~~ 234 (711)
T COG1747 222 TEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999866554
No 296
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.86 E-value=84 Score=34.98 Aligned_cols=173 Identities=16% Similarity=0.036 Sum_probs=88.1
Q ss_pred HHHHHHHHHHH-cCCCCCh--hhHHHHHHHHH-ccCChHHHHHHHhhccc----cCh-----hHHHHHHHHHHhcCChhH
Q 037537 17 TGKSLHALYLK-NLVPFSA--YLSNHFILLYS-KCGCLSAAHHAFNQTQH----ANV-----FSFNVLLAAYARQLRIAS 83 (677)
Q Consensus 17 ~a~~~~~~~~~-~~~~~~~--~~~~~ll~~~~-~~g~~~~a~~~~~~~~~----~~~-----~~~~~li~~~~~~g~~~~ 83 (677)
.|+..++.+.+ ..++|.. .++-.+.+.+. ...+++.|+..+++... ++. .....++..|.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34556666663 2233322 34445555554 66789999998886654 111 12234556666665544
Q ss_pred HHHHhccCCC----CCcchHHH----H-HHHHHhCCChhHHHHHHHHhHhcC---CCCCcccHHHHHHHhhcchh----h
Q 037537 84 ARQLFDQIPQ----PDLVSYNT----L-ISAYADCGDTESALSLFKDMREKR---FDTDGFTLSGLITASSNNLC----L 147 (677)
Q Consensus 84 A~~~f~~m~~----~~~~~~~~----l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~a~~~~~~----~ 147 (677)
|.+..++..+ .....|.. + +..+...+++..|++.++.+...- ..|-...+..++.+...... .
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 7777766443 11222332 2 222333478999999998876543 23334445455555443322 2
Q ss_pred HHHHHHHHHHhC---------CCCChhHHHHHHHHH--HhcCChhHHHHHHhhc
Q 037537 148 IKQLHCLAIYCG---------FDHYASVNNSLLTCY--SRNGFLDEAKRVFYEM 190 (677)
Q Consensus 148 ~~~i~~~~~~~g---------~~~~~~~~~~li~~~--~~~g~~~~A~~~f~~m 190 (677)
..+....+.... -.|...+|..+++.+ ...|+++.+...++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222222221111 123445666666544 3556666666555554
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.89 E-value=2.7 Score=25.39 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 521 VPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 521 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
..|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4688899999999999999999998765
No 298
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=81.89 E-value=48 Score=33.12 Aligned_cols=94 Identities=12% Similarity=0.071 Sum_probs=58.9
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcC-------CCCCcc------hHHHHHHHHHHcCChHHHHHHHHHHHH----CCC
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRM-------PEHNTV------SLNSMIAGYAQHGIGMEALRLFEWMLE----TNI 431 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~-------~~~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~ 431 (677)
..++-+|...|.+..++++|.-+..+. .-.|.. +.--|..++...|+..+|.+.-++..+ .|-
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 567778888888888888776443332 213322 122355677788888888777776543 342
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 037537 432 PPT-NITFVSVLSACAHTGKVAEGQKYFSMMK 462 (677)
Q Consensus 432 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 462 (677)
+|- ......+.+.|...|+.+.|+.-++...
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 332 2345566677788888888877766554
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.63 E-value=36 Score=29.88 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=21.4
Q ss_pred ccCCHHHHHHHHHHhHHhcCCccChH-HHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 447 HTGKVAEGQKYFSMMKDMFGFEPEGE-HYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..++.+++..++..+.- +.|... +-..-...+.+.|+|.+|..+|+++
T Consensus 22 ~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred ccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44455555555555542 344321 1122223344555555555555554
No 300
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.45 E-value=2.3 Score=24.18 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHH
Q 037537 521 VPYVMLANIYAASGKWEEVATIRR 544 (677)
Q Consensus 521 ~~~~~l~~~y~~~g~~~~a~~~~~ 544 (677)
.....|..++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 457789999999999999998875
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.26 E-value=3.1 Score=26.60 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 521 VPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 521 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4688999999999999999999998865
No 302
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.18 E-value=1.2e+02 Score=35.58 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=60.3
Q ss_pred CChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHH
Q 037537 178 GFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHL 257 (677)
Q Consensus 178 g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 257 (677)
+++++|..-+.+++ ...|.-.+.---++|.+.+|+.++ +|+...+..+..+|+. ++
T Consensus 894 ~ry~~AL~hLs~~~----~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL 949 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG----ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HL 949 (1265)
T ss_pred HHHHHHHHHHHHcC----ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HH
Confidence 56777777777762 334555566566778888888774 5777777666655542 11
Q ss_pred HHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHh
Q 037537 258 IKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLN 326 (677)
Q Consensus 258 ~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~ 326 (677)
.+.. -++--.-+|.++|+ .++|.+.+.. + |++.+|+.+-.+|.
T Consensus 950 ~~~~------~~~~Aal~Ye~~Gk-lekAl~a~~~------------------~-~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 950 REEL------MSDEAALMYERCGK-LEKALKAYKE------------------C-GDWREALSLAAQLS 992 (1265)
T ss_pred HHhc------cccHHHHHHHHhcc-HHHHHHHHHH------------------h-ccHHHHHHHHHhhc
Confidence 1111 12223346777777 8887666554 3 77777777766654
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=80.95 E-value=3.1 Score=25.25 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 521 VPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 521 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+|..++.+|...|++++|+..+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46899999999999999999999998763
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=80.87 E-value=18 Score=32.69 Aligned_cols=97 Identities=15% Similarity=0.054 Sum_probs=69.1
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCCCC------cchHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPEHN------TVSLNSMIAGYAQHGIGMEALRLFEWMLE---TNIPPTNITFV 439 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~ 439 (677)
-..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+... .|-.++...-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4566789999999999999999999988743 23577788888899999999888877654 32223332222
Q ss_pred HHHHH--HhccCCHHHHHHHHHHhHHhc
Q 037537 440 SVLSA--CAHTGKVAEGQKYFSMMKDMF 465 (677)
Q Consensus 440 ~ll~a--~~~~g~~~~a~~~~~~m~~~~ 465 (677)
.+..+ +...+++.+|-+.|-.....+
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 23332 345788999888887776543
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.58 E-value=41 Score=29.87 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=81.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChH-HHHHH--HHHHhhcC
Q 037537 410 YAQHGIGMEALRLFEWMLETNIPPTNI-TFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGE-HYSCM--IDLLGRAG 485 (677)
Q Consensus 410 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l--i~~~~~~g 485 (677)
+++.+..++|+.-|..+.+.|...-++ ............|+...|...|+++-.. .-.|-.. -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 456778899999999998877543322 2223334456889999999999998765 2223222 11111 22456778
Q ss_pred ChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 486 KLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 486 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+++....++-+....+ |--...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 147 sy~dV~srvepLa~d~n--------------~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGN--------------PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCC--------------hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888887776643222 22334566777888899999999999988765
No 306
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.67 E-value=1.1e+02 Score=34.32 Aligned_cols=55 Identities=9% Similarity=0.045 Sum_probs=30.0
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhcc
Q 037537 6 LKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQ 61 (677)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 61 (677)
++-+............++.+.+.|+. +...-..|+..|.+.++.++-.+..+...
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 33333344444444555555566632 34445566777777777666666555444
No 307
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.03 E-value=28 Score=30.90 Aligned_cols=21 Identities=10% Similarity=-0.018 Sum_probs=12.3
Q ss_pred hhcccCCCHHHHHHHHHHHhhc
Q 037537 307 GYSQKEEYSDQALGCFKKLNRV 328 (677)
Q Consensus 307 ~~~~~~~~~~~A~~l~~~m~~~ 328 (677)
+-.+. |++.+|.+.|..+...
T Consensus 176 Aa~ka-gd~a~A~~~F~qia~D 196 (221)
T COG4649 176 AAYKA-GDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHhc-cchHHHHHHHHHHHcc
Confidence 33445 6666666666666553
No 308
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=78.71 E-value=86 Score=32.45 Aligned_cols=128 Identities=12% Similarity=0.121 Sum_probs=97.5
Q ss_pred chHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--CCcchH-HHHHHHH
Q 037537 335 CSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--HNTVSL-NSMIAGY 410 (677)
Q Consensus 335 ~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~ 410 (677)
..|...|++.-+.. ++.++.++....+.++....+.++++++.-|+ .|+...|..+|+.-.. +|...| +-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 44556677766666 99999999999999965554999999999876 5788889999986443 555544 4456666
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 411 AQHGIGMEALRLFEWMLETNIPPT--NITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
..-++-..|..+|+..+.. +..+ ...|..+|+--+.-|++..+..+=+.+.+.
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 7788889999999976653 2333 457888888888889998888888888765
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.68 E-value=4.2 Score=24.53 Aligned_cols=27 Identities=33% Similarity=0.287 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLE 428 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 428 (677)
.|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455667777777888888887777776
No 310
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.79 E-value=7.4 Score=37.74 Aligned_cols=100 Identities=10% Similarity=0.132 Sum_probs=65.9
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCe-----eeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHH
Q 037537 161 DHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDE-----VSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLA 235 (677)
Q Consensus 161 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 235 (677)
+........++..-....+++++...+-++...|+. .+-.+.++. +-.-++++++.++..=++-|+-||.+|+.
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchhhHH
Confidence 333344455555556667777887777666222221 111222332 33446778888888888888888888888
Q ss_pred HHHHHHccCCChHHHHHHHHHHHHhC
Q 037537 236 SILTAFTSLEDLVGGLQFHAHLIKSG 261 (677)
Q Consensus 236 ~ll~a~~~~~~~~~a~~~~~~~~~~g 261 (677)
.+|..+.+.+++..|.++.-.|+...
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888877776654
No 311
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.35 E-value=14 Score=29.06 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 037537 213 LEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIK 259 (677)
Q Consensus 213 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 259 (677)
-++.+-++.+....+.|+.....+.++||.+.+|+..|.++++-+..
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35556666777778889999999999999999999999999987763
No 312
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.91 E-value=1e+02 Score=32.45 Aligned_cols=173 Identities=15% Similarity=0.221 Sum_probs=105.2
Q ss_pred CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 037537 195 DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLID 274 (677)
Q Consensus 195 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 274 (677)
|-...-+++..+.++-...-...+-.+|..-| -+...|..++..|... ..+.-..+++++++..+ .|+.....|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44456678888888888888888888888754 4677888888888777 55666777888877764 35556666777
Q ss_pred HHHHcCCCHHHHHHHHhhCCCC------Ch---hhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhh
Q 037537 275 LYAKCSGDMRDCMKVFEEIPQP------DL---VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACS 345 (677)
Q Consensus 275 ~y~~~g~~~~~A~~~f~~~~~~------~~---~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 345 (677)
.|-+ ++ .+.+...|.++..+ +. ..|.-++.--. .+.+..+.+..+.+..
T Consensus 141 ~yEk-ik-~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~---dD~D~fl~l~~kiqt~----------------- 198 (711)
T COG1747 141 KYEK-IK-KSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIG---DDKDFFLRLQKKIQTK----------------- 198 (711)
T ss_pred HHHH-hc-hhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhcc---ccHHHHHHHHHHHHHh-----------------
Confidence 7776 66 77777777765311 11 14544443222 3344445444444431
Q ss_pred ccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHH
Q 037537 346 NLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGY 410 (677)
Q Consensus 346 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 410 (677)
.|...- ...+.-+-.-|....++++|.+++..+.+ +|+..-..++.-+
T Consensus 199 ----------------lg~~~~-~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 199 ----------------LGEGRG-SVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred ----------------hccchH-HHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 111111 22333344567777888888888886654 4555544555443
No 313
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.48 E-value=17 Score=32.43 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=42.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC----hHHHHHHHHHH
Q 037537 474 YSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGK----WEEVATIRRLM 546 (677)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~----~~~a~~~~~~m 546 (677)
|...+.-++......++.+++++. ..-.+.++.++|+...++..+.++|...|. ..+|..+|++.
T Consensus 31 WG~ALLELAqfk~g~es~~miedA--------isK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDA--------ISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHH--------HHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcchHHHHHHHH--------HHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 444444455666667787777766 345667789999999999999999988765 33444444444
No 314
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.28 E-value=6.2 Score=23.82 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 521 VPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 521 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+|..++..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998765
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.21 E-value=5.5 Score=25.36 Aligned_cols=27 Identities=41% Similarity=0.507 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLE 428 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 428 (677)
+++.|...|...|++++|+.++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 566677777777777777777777654
No 316
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.51 E-value=1.4e+02 Score=33.26 Aligned_cols=86 Identities=14% Similarity=0.099 Sum_probs=49.8
Q ss_pred HHcCChHHHHHHHHHHHHCCC-CCC-----HHHHHHHHHHH--hccCCHHHHHHHHH--------HhHHhcCCccChHHH
Q 037537 411 AQHGIGMEALRLFEWMLETNI-PPT-----NITFVSVLSAC--AHTGKVAEGQKYFS--------MMKDMFGFEPEGEHY 474 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g~-~p~-----~~t~~~ll~a~--~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~ 474 (677)
+-.+++..|...+..|.+..- .|+ ...+...+.|. -..|+++.|+..|. ..... +..++..++
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~-~~~~El~il 450 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRK-SKFRELYIL 450 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccC-CcchHHHHH
Confidence 457889999999999886421 121 23444444443 35689999999997 33333 444454444
Q ss_pred HHH--HHHHhhcCC--hHH--HHHHHHhC
Q 037537 475 SCM--IDLLGRAGK--LTD--AERLIEAM 497 (677)
Q Consensus 475 ~~l--i~~~~~~g~--~~~--A~~~~~~m 497 (677)
..| +-.+...+. .++ +.++++.+
T Consensus 451 a~LNl~~I~~~~~~~~~~~~~~~~l~~~i 479 (608)
T PF10345_consen 451 AALNLAIILQYESSRDDSESELNELLEQI 479 (608)
T ss_pred HHHHHHHHhHhhcccchhhhHHHHHHHhc
Confidence 432 223333333 222 77777766
No 317
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=75.28 E-value=3.4 Score=25.41 Aligned_cols=30 Identities=23% Similarity=0.122 Sum_probs=16.9
Q ss_pred HHHHcCCCCChhhHHHHHHHHHccCChHHHH
Q 037537 24 LYLKNLVPFSAYLSNHFILLYSKCGCLSAAH 54 (677)
Q Consensus 24 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 54 (677)
+.++.. |-++..|+.+...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344443 555566666666666666666554
No 318
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=75.00 E-value=1.8e+02 Score=34.25 Aligned_cols=238 Identities=8% Similarity=-0.021 Sum_probs=102.1
Q ss_pred HHHhhccccChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccH
Q 037537 55 HAFNQTQHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTL 134 (677)
Q Consensus 55 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 134 (677)
.+...+..+|+.+-...+..+.+.+..+....+...+..+|...-...+.++.+.+........+..++.. +|...-
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR 701 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVR 701 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHH
Confidence 44444445667676666777766665443344444444455444444444444432221112223233322 344333
Q ss_pred HHHHHHhhcchh-hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCch
Q 037537 135 SGLITASSNNLC-LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGL 213 (677)
Q Consensus 135 ~~ll~a~~~~~~-~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~ 213 (677)
...+.++...+. ....+.. .=-.+|..+-...+..+.+.+..+. +.... ..++...-.....++...+..+
T Consensus 702 ~~A~~aL~~~~~~~~~~l~~----~L~D~d~~VR~~Av~aL~~~~~~~~---l~~~l-~D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 702 AAALDVLRALRAGDAALFAA----ALGDPDHRVRIEAVRALVSVDDVES---VAGAA-TDENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHHHHHhhccCCHHHHHH----HhcCCCHHHHHHHHHHHhcccCcHH---HHHHh-cCCCHHHHHHHHHHHHHhcccc
Confidence 344444433322 1111111 1114455555555555555443322 22222 3344444444555555544432
Q ss_pred H-HHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhh
Q 037537 214 E-ALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEE 292 (677)
Q Consensus 214 ~-A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~ 292 (677)
. +...+..+... +|...-...+.++...+....+...+..+++ .++..+-...+.++.+.+. -+....+...
T Consensus 774 ~~~~~~L~~ll~D---~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 774 APAGDAVRALTGD---PDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred chhHHHHHHHhcC---CCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 2 23344444332 4455555556666555554333222222221 2344555555555555443 3222233333
Q ss_pred CCCCChhhHHHHHhhhcc
Q 037537 293 IPQPDLVLWNTMISGYSQ 310 (677)
Q Consensus 293 ~~~~~~~~~~~li~~~~~ 310 (677)
+..++...--..+.++.+
T Consensus 847 L~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 847 LTDPHLDVRKAAVLALTR 864 (897)
T ss_pred hcCCCHHHHHHHHHHHhc
Confidence 334444444444444443
No 319
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=74.74 E-value=1.8e+02 Score=34.20 Aligned_cols=135 Identities=11% Similarity=-0.034 Sum_probs=71.0
Q ss_pred cchhHHHHHHHHccCCHHH-HHH-HHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 037537 369 ISVNNALVAMYSKCGNLED-ARR-LFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACA 446 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~-A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 446 (677)
..+-...+.++...+..+. +.. +...+..+|...-.+.+.++...|....+...+..+++ .+|...-...+.++.
T Consensus 756 ~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~ 832 (897)
T PRK13800 756 REVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALA 832 (897)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 4444455555555554332 222 33333456666666677777777766555444555543 345555555666666
Q ss_pred ccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHH
Q 037537 447 HTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANH 511 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 511 (677)
..+.. ++...+..+.+ .|+..+-...+.++++.+.-..+...+......++..++..+.+
T Consensus 833 ~l~~~-~a~~~L~~~L~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~~ 892 (897)
T PRK13800 833 GAAAD-VAVPALVEALT----DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYARR 892 (897)
T ss_pred hcccc-chHHHHHHHhc----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 66653 34444444443 35666666666777665334455555555544545444333333
No 320
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.62 E-value=86 Score=29.96 Aligned_cols=201 Identities=13% Similarity=0.207 Sum_probs=101.3
Q ss_pred HHHHHHHHhhCCC-------CChhhHHHHHhhhcccCCCHHHHHHHHHHHhh---cCCC--CCcchHHHHHHHhhccC-h
Q 037537 283 MRDCMKVFEEIPQ-------PDLVLWNTMISGYSQKEEYSDQALGCFKKLNR---VGYH--PDDCSFVCVISACSNLS-P 349 (677)
Q Consensus 283 ~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~---~g~~--p~~~t~~~ll~a~~~~~-~ 349 (677)
.++|..-|++..+ ....+..-||..+.+. +++++.++.+.+|.. +-+. -+..+.++++.-.+... .
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l-~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRL-GNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 6667666666542 2233445567777777 888888888877753 1111 23344555555544433 3
Q ss_pred hHHHHHHHHHHHhhcccCc----cchhHHHHHHHHccCCHHHHHHHHhcCCC--------CC-------cchHHHHHHHH
Q 037537 350 SLGKQIHALTIKIEIRSNR----ISVNNALVAMYSKCGNLEDARRLFDRMPE--------HN-------TVSLNSMIAGY 410 (677)
Q Consensus 350 ~~~~~i~~~~~~~~~~~~~----~~~~~~li~~y~k~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~~ 410 (677)
+.-...+...++.--+..+ ..+-+.|...|...|.+.+..+++.++.. .| ...|..=|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 3333333332221000000 11224566667677777776666665532 11 22455556667
Q ss_pred HHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHh-----ccCCHHHHHHHHHHhHHhcCCc--cChH---HHHHHHH
Q 037537 411 AQHGIGMEALRLFEWMLETN-IPPTNITFVSVLSACA-----HTGKVAEGQKYFSMMKDMFGFE--PEGE---HYSCMID 479 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~--p~~~---~~~~li~ 479 (677)
..+.+-..--.+|++.+.-. --|-+ ....+|.-|. +.|.+++|-.=|-+.-+.|.-. |... -|-.|.+
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 77776666666777665422 12333 2344555554 4566666654443333333222 2211 2444555
Q ss_pred HHhhcC
Q 037537 480 LLGRAG 485 (677)
Q Consensus 480 ~~~~~g 485 (677)
++.++|
T Consensus 281 MLmkS~ 286 (440)
T KOG1464|consen 281 MLMKSG 286 (440)
T ss_pred HHHHcC
Confidence 555554
No 321
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=73.24 E-value=79 Score=29.32 Aligned_cols=187 Identities=15% Similarity=0.172 Sum_probs=100.7
Q ss_pred hhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcc-hHHHHHHH--HHHcCChHHH
Q 037537 344 CSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTV-SLNSMIAG--YAQHGIGMEA 419 (677)
Q Consensus 344 ~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~-~~~~li~~--~~~~g~~~~A 419 (677)
+-+.| ...++--+... ..+.|+-+.++|-|.--+...|+++.|.+.|+...+-|+. -|..+=+| +---|++.-|
T Consensus 75 YDSlGL~~LAR~DftQa--Lai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQA--LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhh--hhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhh
Confidence 44445 44444433333 3456666778888888888888888888888888775443 23333222 3345788888
Q ss_pred HHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHH-HHHHhhcCChHHHHHHHHh
Q 037537 420 LRLFEWMLETNIPPTN--ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCM-IDLLGRAGKLTDAERLIEA 496 (677)
Q Consensus 420 ~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 496 (677)
.+=|.+.-+.. +.|+ .-|..+.. ..-+..+|..-+..-- ...|.+-|... +..|.-.=..+.+.+-+..
T Consensus 153 q~d~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~----~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a 224 (297)
T COG4785 153 QDDLLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRA----EKSDKEQWGWNIVEFYLGKISEETLMERLKA 224 (297)
T ss_pred HHHHHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHH----HhccHhhhhHHHHHHHHhhccHHHHHHHHHh
Confidence 87777766543 2222 22333222 2234445543322211 12344444432 3333211112222222222
Q ss_pred CCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037537 497 MPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 497 m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 551 (677)
-..+. ...++++ ..+|.-|..-|...|+.++|..+|+.....++
T Consensus 225 ~a~~n----~~~Ae~L-------TEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 225 DATDN----TSLAEHL-------TETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hccch----HHHHHHH-------HHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 11111 1112222 25788899999999999999999998776554
No 322
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=73.11 E-value=19 Score=28.73 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHH
Q 037537 214 EALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLI 273 (677)
Q Consensus 214 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 273 (677)
+..+-++.+....+.|+.....+.|+||.+.+++..|.++++-+...- .+...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHH
Confidence 445556666677788999999999999999999999999998776542 22222555444
No 323
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=72.62 E-value=1.2e+02 Score=30.97 Aligned_cols=240 Identities=13% Similarity=0.099 Sum_probs=130.0
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHhHHH----HHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHH
Q 037537 209 HREGLEALQLFQEMVSLQLGLDMYTLA----SILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMR 284 (677)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~pd~~t~~----~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 284 (677)
.|+++.|.+-|+-|.. |..|-. .|.-..-+.|+.+.+.++-+..-..- +.-...+.+++...+..|+ ++
T Consensus 133 eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gd-Wd 205 (531)
T COG3898 133 EGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGD-WD 205 (531)
T ss_pred cCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCC-hH
Confidence 4555555555555543 222211 11222234455555555544443321 2223345555555566566 66
Q ss_pred HHHHHHhhCC-----CCChh--hHHHHHhhhcc--cCCCHHHHHHHHHHHhhcCCCCCcchH-HHHHHHhhccC-hhHHH
Q 037537 285 DCMKVFEEIP-----QPDLV--LWNTMISGYSQ--KEEYSDQALGCFKKLNRVGYHPDDCSF-VCVISACSNLS-PSLGK 353 (677)
Q Consensus 285 ~A~~~f~~~~-----~~~~~--~~~~li~~~~~--~~~~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~~-~~~~~ 353 (677)
.|.++.+.-. ++++. .-..|+.+-.. ..-+...|.+.-.+.. .+.||-+-- ...-.++...+ +..+.
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhh
Confidence 6666665433 23321 11122221110 0023344444333332 245554332 22233455566 77777
Q ss_pred HHHHHHHHhhcccCccchhHHHHHHHHccCCHHH--HH--HHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037537 354 QIHALTIKIEIRSNRISVNNALVAMYSKCGNLED--AR--RLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLET 429 (677)
Q Consensus 354 ~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~--A~--~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 429 (677)
.|.+.+-+....|+ -.++-.+.+.|+--. .. +-++.|...|..+--+...+-...|++..|..--+....
T Consensus 284 ~ilE~aWK~ePHP~-----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r- 357 (531)
T COG3898 284 KILETAWKAEPHPD-----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR- 357 (531)
T ss_pred hHHHHHHhcCCChH-----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-
Confidence 77777766655555 344445567776322 21 235667777888888888888888998887776666655
Q ss_pred CCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHhHHh
Q 037537 430 NIPPTNITFVSVLSAC-AHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 430 g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~ 464 (677)
..|....|..+.+.- ...|+-.++.+.+.+..+.
T Consensus 358 -~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 -EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 578888888777765 4569999999988888764
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=72.52 E-value=5.6 Score=23.71 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 522 PYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 522 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3567788999999999999999998764
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.18 E-value=27 Score=31.96 Aligned_cols=74 Identities=14% Similarity=0.012 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--CccChHHHHHHHHHHhhcCChHHHH
Q 037537 417 MEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFG--FEPEGEHYSCMIDLLGRAGKLTDAE 491 (677)
Q Consensus 417 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~ 491 (677)
++|...|-++...+.--++..... |..+-...+.+++.+++....+.+. -.+|++.+.+|+..|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 567777777776664433333333 3334445677777777776665432 2456777888888888888877774
No 326
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.92 E-value=64 Score=31.11 Aligned_cols=132 Identities=12% Similarity=0.133 Sum_probs=67.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHhccCCHHHHHHHHHHhHH---hcCCccChHHHHH
Q 037537 407 IAGYAQHGIGMEALRLFEWMLETNIPPTNIT-------FVSVLSACAHTGKVAEGQKYFSMMKD---MFGFEPEGEHYSC 476 (677)
Q Consensus 407 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~~~~ 476 (677)
.+-..+.+++++|+..+.+....|+..|..+ ...+...|...|+...-.+.....++ .+.-........+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3445566788999999999999888777544 44555666667765544333322221 1111112333444
Q ss_pred HHHHHhh-cCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 477 MIDLLGR-AGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 477 li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
|++.+.. ...+++-.++......= ..+--+..+++ ..-.-++.+|.+.|++.+|+.+..-..
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iew----A~rEkr~fLr~-----~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEW----ADREKRKFLRL-----ELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHH----HHHHHHHHHHH-----HHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4443321 22233333333221000 00001111111 112357889999999999998766553
No 327
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.66 E-value=30 Score=31.46 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=50.2
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCccC-----hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCC
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEPE-----GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSN 519 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~ 519 (677)
+...|++++|..-|...... .+|. ...|..-.-++.+.+.++.|.+-..+. +++.|..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa---------------iel~pty 167 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKA---------------IELNPTY 167 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh---------------HhcCchh
Confidence 34456666666655555543 1111 112332334455666666665544433 5666766
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 520 AVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 520 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
..+...-..+|.+..++++|++-++++.+.
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 666666667777777888888877777664
No 328
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.41 E-value=83 Score=32.08 Aligned_cols=160 Identities=20% Similarity=0.234 Sum_probs=87.5
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCC------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC---------CCCCCH
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPE------HNTVSLNSMIAGYAQHGIGMEALRLFEWMLET---------NIPPTN 435 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------g~~p~~ 435 (677)
.+.-+.+-|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|++........+.... .+++-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 456788899999999999999999654 12335666666666667776666666555542 133334
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-----Ccc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHH
Q 037537 436 ITFVSVLSACAHTGKVAEGQKYFSMMKDMFG-----FEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAA 509 (677)
Q Consensus 436 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 509 (677)
..+..+..-+.+ ++..|.+.|-....... +.| |+.+|.. +.+++--++-+--+.++.. ..+
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYgg-LcALAtfdr~~Lk~~vi~n----------~~F 298 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGG-LCALATFDRQDLKLNVIKN----------ESF 298 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHh-hHhhccCCHHHHHHHHHcc----------hhh
Confidence 444444444333 66666666544432211 223 2333432 2233322222222233332 345
Q ss_pred HHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 510 NHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 510 ~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+.+++++| ..+..|..-| .+++..-++++++++.
T Consensus 299 k~flel~P---qlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 299 KLFLELEP---QLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred hhHHhcCh---HHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 56778887 3454544444 3567777777666543
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=70.99 E-value=6.5 Score=23.71 Aligned_cols=27 Identities=37% Similarity=0.295 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLE 428 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 428 (677)
+|..+...|.+.|+.++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666777777777777776655
No 330
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.66 E-value=43 Score=32.79 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=18.6
Q ss_pred ChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh
Q 037537 111 DTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC 146 (677)
Q Consensus 111 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 146 (677)
++++++.++..=.+.|+-||.+|+..++..+.+.++
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n 150 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKEN 150 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhccc
Confidence 344555555555555555555555555555555544
No 331
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=70.58 E-value=91 Score=28.93 Aligned_cols=186 Identities=15% Similarity=0.082 Sum_probs=93.4
Q ss_pred HHhcCChhHHHHHHhhc-CCCCC-eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHH
Q 037537 174 YSRNGFLDEAKRVFYEM-GEIKD-EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGL 251 (677)
Q Consensus 174 ~~~~g~~~~A~~~f~~m-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 251 (677)
|-..|-.+-|+-=|.+. ...|+ ...||-|.--+...|+++.|.+.|+...+....- ..+...---++.-.|++..|.
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhH
Confidence 34445555555555554 33443 3457888888888999999999999887743221 222211111233446777776
Q ss_pred HHHHHHHHhC-CCCchhhHHHHHHHHHHcCCCHHHHHH-HHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcC
Q 037537 252 QFHAHLIKSG-FHQNSHIGSGLIDLYAKCSGDMRDCMK-VFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVG 329 (677)
Q Consensus 252 ~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~~A~~-~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g 329 (677)
+-+-..-+.. -.|-...|--|+ ...-+..+|.. +.++....|..-|..-|-.|.-. .-.+ ..+|++....
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~----E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLg-kiS~--e~l~~~~~a~- 225 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLN----EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLG-KISE--ETLMERLKAD- 225 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHH----HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHh-hccH--HHHHHHHHhh-
Confidence 6555444432 112122222222 11112555543 33444555666666665555432 2222 2344444432
Q ss_pred CCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCC
Q 037537 330 YHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMP 396 (677)
Q Consensus 330 ~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 396 (677)
..|...+.-.+ +.+|--|..-|...|++++|..+|+-..
T Consensus 226 -a~~n~~~Ae~L---------------------------TEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 226 -ATDNTSLAEHL---------------------------TETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred -ccchHHHHHHH---------------------------HHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 11333332222 4455566666666777777766665543
No 332
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.90 E-value=10 Score=24.99 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=12.7
Q ss_pred HHHHHhhcCChHHHHHHHHhCC
Q 037537 477 MIDLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m~ 498 (677)
|..+|...|+.+.|.+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3455556666666666665554
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=68.69 E-value=24 Score=32.25 Aligned_cols=70 Identities=20% Similarity=0.116 Sum_probs=39.8
Q ss_pred HccCChHHHHHHHhhccc----cChhHHHHHHHHHHhcCChhHHHHHhccCC-------CCCcchHHHHHHHHHhCCChh
Q 037537 45 SKCGCLSAAHHAFNQTQH----ANVFSFNVLLAAYARQLRIASARQLFDQIP-------QPDLVSYNTLISAYADCGDTE 113 (677)
Q Consensus 45 ~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~ 113 (677)
++.|+ +.|++.|-.+.. .++..-..|...|. ..+.+.|..++-... ..|+..+.+|++.|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34443 345555555444 44445555555554 445666665554432 256667777777777777777
Q ss_pred HHH
Q 037537 114 SAL 116 (677)
Q Consensus 114 ~A~ 116 (677)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 664
No 334
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.60 E-value=58 Score=25.93 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=43.5
Q ss_pred HHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 037537 377 AMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVS 440 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 440 (677)
..+...|++++|..+.+.+..||...|-+|-. .+.|..+++..-+.+|..+| .|...+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 44566888888888888888888888877654 45566677777777777776 555555543
No 335
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.55 E-value=58 Score=25.93 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=44.5
Q ss_pred HHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchH
Q 037537 273 IDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSF 337 (677)
Q Consensus 273 i~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~ 337 (677)
+..+...|+ +++|..+.+.+.-||...|-++-..-. |..+++..-+.+|..+| .|...+|
T Consensus 46 lsSLmNrG~-Yq~Al~l~~~~~~pdlepw~ALce~rl---Gl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGD-YQSALQLGNKLCYPDLEPWLALCEWRL---GLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccch-HHHHHHhcCCCCCchHHHHHHHHHHhh---ccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 344556688 999999999999999999998877654 66677777777777665 4544444
No 336
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=68.11 E-value=16 Score=28.66 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=35.9
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 507 KAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 507 ~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
.+.+..++.+|+|...-..+...|...|++++|++.+-.+.+..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45667778899999999999999999999999999988887654
No 337
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=67.58 E-value=29 Score=31.04 Aligned_cols=77 Identities=21% Similarity=0.327 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHcCCh-------HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC----C-------HHHHHHHHHHhH
Q 037537 402 SLNSMIAGYAQHGIG-------MEALRLFEWMLETNIPPT-NITFVSVLSACAHTG----K-------VAEGQKYFSMMK 462 (677)
Q Consensus 402 ~~~~li~~~~~~g~~-------~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g----~-------~~~a~~~~~~m~ 462 (677)
-|..-+.-+++.... ++|++-|++.+. +.|+ ..++..+-.++...+ + +++|...|+...
T Consensus 30 ~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv 107 (186)
T PF06552_consen 30 NWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAV 107 (186)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH
Confidence 355544445544444 445555555555 6788 478888888776544 2 445555555555
Q ss_pred HhcCCccChHHHHHHHHHHhh
Q 037537 463 DMFGFEPEGEHYSCMIDLLGR 483 (677)
Q Consensus 463 ~~~~~~p~~~~~~~li~~~~~ 483 (677)
. .+|+..+|+.-+++..+
T Consensus 108 ~---~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 108 D---EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp H---H-TT-HHHHHHHHHHHT
T ss_pred h---cCCCcHHHHHHHHHHHh
Confidence 3 58999999988877643
No 338
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.41 E-value=1.4e+02 Score=29.76 Aligned_cols=144 Identities=10% Similarity=0.046 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHH----HHHHHHHHcCChHHHHH
Q 037537 349 PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLN----SMIAGYAQHGIGMEALR 421 (677)
Q Consensus 349 ~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~----~li~~~~~~g~~~~A~~ 421 (677)
...+...++.+++ .++.| ...++---++|.-.|+.+.-...++++.. +|...|. ...-++...|-+++|.+
T Consensus 119 ~h~a~~~wdklL~-d~PtD-lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk 196 (491)
T KOG2610|consen 119 HHEAAIEWDKLLD-DYPTD-LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEK 196 (491)
T ss_pred ccHHHHHHHHHHH-hCchh-hhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHH
Confidence 3344444444443 33444 66666677888899999988888888754 4543332 22345567899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC---hHHHHHHHHHHhhcCChHHHHHHHHh
Q 037537 422 LFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE---GEHYSCMIDLLGRAGKLTDAERLIEA 496 (677)
Q Consensus 422 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (677)
.-++..+-+ +-|.-.-.++....--.|+..++.++...-..... ..+ ...|-...-.+...+.++.|+++|++
T Consensus 197 ~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 197 QADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-QSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh-hhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999988854 55566666777777788999999998877654322 111 22344444556677899999999975
No 339
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=67.02 E-value=1.7e+02 Score=30.63 Aligned_cols=111 Identities=10% Similarity=0.076 Sum_probs=62.0
Q ss_pred cCCChHHHHH-HHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHH
Q 037537 11 GRRDLVTGKS-LHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQ 86 (677)
Q Consensus 11 ~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 86 (677)
..|++..|-+ +++.+.+..-.|+ ............|+++.+.+....... ....+...++...-+.|++++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3466655543 4444433322333 332333344567888888777766555 445566777777777888888887
Q ss_pred HhccCCC-----CCcchHHHHHHHHHhCCChhHHHHHHHHhHhc
Q 037537 87 LFDQIPQ-----PDLVSYNTLISAYADCGDTESALSLFKDMREK 125 (677)
Q Consensus 87 ~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 125 (677)
+-+.|.. |.+.+-. ...--+.|-++++...+++....
T Consensus 379 ~a~~~l~~eie~~ei~~ia--a~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVA--AGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHhccccCChhheeee--cccHHHHhHHHHHHHHHHHHhcc
Confidence 7766653 2222211 11222345677777777776643
No 340
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=66.47 E-value=1.2e+02 Score=30.52 Aligned_cols=44 Identities=9% Similarity=-0.005 Sum_probs=23.6
Q ss_pred CCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHccCChHHHHH
Q 037537 12 RRDLVTGKSLHALYLKNL--VPFSAYLSNHFILLYSKCGCLSAAHH 55 (677)
Q Consensus 12 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~ 55 (677)
..+.+.++..|...+..- ...--.++..+.++.++.|.++++..
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 345566666666555431 11122455666666666666665553
No 341
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.92 E-value=77 Score=34.74 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=95.9
Q ss_pred HHccCCHHHHHHHHhcCCC--------CCcchHHHHHHHHHHcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 379 YSKCGNLEDARRLFDRMPE--------HNTVSLNSMIAGYAQHG-----IGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 379 y~k~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
++...+.+.|...|....+ -+......+...|.+.. +.+.|+.+|.+.-+.| .|+...+...+.-.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYET 337 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHc
Confidence 4455677888877776533 24455667777777754 5667999999999888 67776666555444
Q ss_pred hc-cCCHHHHHHHHHHhHHhcCCccChHHHHHHHH--HHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchh
Q 037537 446 AH-TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID--LLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVP 522 (677)
Q Consensus 446 ~~-~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~ 522 (677)
.. ..+...|.++|....+. |..+ ..-+-++.- +.+..-+.+.|..++++.-... ++.+
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~-G~~~-A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-----------------~~~A 398 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKA-GHIL-AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-----------------NPSA 398 (552)
T ss_pred CCccccHHHHHHHHHHHHHc-CChH-HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-----------------Chhh
Confidence 44 35678999999998876 5433 222323322 2335567888888888764221 1232
Q ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHhCCCcc
Q 037537 523 YVMLANIYAAS-GKWEEVATIRRLMRDRGVQK 553 (677)
Q Consensus 523 ~~~l~~~y~~~-g~~~~a~~~~~~m~~~g~~~ 553 (677)
...+...|... ++++.+.-.+..+.+.|..-
T Consensus 399 ~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 399 AYLLGAFYEYGVGRYDTALALYLYLAELGYEV 430 (552)
T ss_pred HHHHHHHHHHccccccHHHHHHHHHHHhhhhH
Confidence 33333333322 67777777777777666543
No 342
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=65.58 E-value=1.6e+02 Score=29.82 Aligned_cols=63 Identities=13% Similarity=0.060 Sum_probs=45.9
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHhhcCCCC------CeeeHHHHHHHHHhCCCchHHHHHHHHHHH
Q 037537 162 HYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIK------DEVSWNSMVVAYGQHREGLEALQLFQEMVS 224 (677)
Q Consensus 162 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 224 (677)
....+|..+...+-+.|.++.|...+..+.... +....-.-...+...|+..+|+..+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567788888999999999999888881111 233344456677788999999999888876
No 343
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.03 E-value=2.4e+02 Score=31.64 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCChhHHHHHHhhc
Q 037537 168 NSLLTCYSRNGFLDEAKRVFYEM 190 (677)
Q Consensus 168 ~~li~~~~~~g~~~~A~~~f~~m 190 (677)
..|...|...+++.+|...+-..
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhc
Confidence 34777788888888888777766
No 344
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=62.69 E-value=49 Score=32.72 Aligned_cols=90 Identities=18% Similarity=0.133 Sum_probs=59.2
Q ss_pred HHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 037537 377 AMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 453 (677)
+-|.|.|++++|...|..-.. | |.+++..-..+|.+..++..|..=-...+..+ +.-...|..=..+-...|...+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 568899999999999987654 5 89999999999999998887777666655432 1111223333333333455555
Q ss_pred HHHHHHHhHHhcCCccC
Q 037537 454 GQKYFSMMKDMFGFEPE 470 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p~ 470 (677)
|.+=.+... .+.|.
T Consensus 184 AKkD~E~vL---~LEP~ 197 (536)
T KOG4648|consen 184 AKKDCETVL---ALEPK 197 (536)
T ss_pred HHHhHHHHH---hhCcc
Confidence 555555554 35676
No 345
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.99 E-value=38 Score=29.19 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCC---------CCCcchHHHHHHHHHhCCC-hhHHHHHHHHhHhcCCCCCcccHHHH
Q 037537 68 FNVLLAAYARQLRIASARQLFDQIP---------QPDLVSYNTLISAYADCGD-TESALSLFKDMREKRFDTDGFTLSGL 137 (677)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~m~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~l 137 (677)
.|.++.-.+..++.....++++.+. ..+..+|++++.+.++... ---+..+|.-|.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444444444444444332 1456678888888866655 44566777888777777888888878
Q ss_pred HHHhhcc
Q 037537 138 ITASSNN 144 (677)
Q Consensus 138 l~a~~~~ 144 (677)
+.+|.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8776654
No 346
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.98 E-value=81 Score=30.49 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=59.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhh
Q 037537 406 MIAGYAQHGIGMEALRLFEWMLE--TNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGR 483 (677)
Q Consensus 406 li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 483 (677)
=|.+++..+++.+++...-+--+ +.++|... ..-|-.|++.+....+.++-..-... .-.-+..-|.++++.|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHH
Confidence 37788888899888876544433 22445443 33444578888888888877766654 222234458888777654
Q ss_pred -----cCChHHHHHHHHhC
Q 037537 484 -----AGKLTDAERLIEAM 497 (677)
Q Consensus 484 -----~g~~~~A~~~~~~m 497 (677)
.|.++||++++..-
T Consensus 166 ~VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHHhccccHHHHHHHHhcC
Confidence 59999999998543
No 347
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.62 E-value=1e+02 Score=26.67 Aligned_cols=78 Identities=12% Similarity=0.118 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhc--------CCCCCeeeHHHHHHHHHhCCC-chHHHHHHHHHHHCCCCCCHhHHHHH
Q 037537 167 NNSLLTCYSRNGFLDEAKRVFYEM--------GEIKDEVSWNSMVVAYGQHRE-GLEALQLFQEMVSLQLGLDMYTLASI 237 (677)
Q Consensus 167 ~~~li~~~~~~g~~~~A~~~f~~m--------~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~l 237 (677)
.|.++.-....+.+.....+++.+ ....+-.+|+.++.+.++..- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 355555555556666666665555 123456678888888866655 34566788888887788888888888
Q ss_pred HHHHccC
Q 037537 238 LTAFTSL 244 (677)
Q Consensus 238 l~a~~~~ 244 (677)
+.+|.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8887664
No 348
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.38 E-value=1.3e+02 Score=27.45 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=62.6
Q ss_pred HHHHHccCChHHHHHHHhhccc-cChh-----HHHHHHHHHHhcCChhHHHHHhccCCCCCcch--HHHHHHHHHhCCCh
Q 037537 41 ILLYSKCGCLSAAHHAFNQTQH-ANVF-----SFNVLLAAYARQLRIASARQLFDQIPQPDLVS--YNTLISAYADCGDT 112 (677)
Q Consensus 41 l~~~~~~g~~~~a~~~~~~~~~-~~~~-----~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~ 112 (677)
...+..++++++|...+.+... +... +--.|.......|.+++|...++....++-.+ ...-...+...|+-
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 4566788999999998887775 2222 23345556777899999999998877664333 22234578899999
Q ss_pred hHHHHHHHHhHhcC
Q 037537 113 ESALSLFKDMREKR 126 (677)
Q Consensus 113 ~~A~~~~~~m~~~g 126 (677)
++|..-|+.-++.+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 99999999988775
No 349
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.38 E-value=1.5e+02 Score=27.90 Aligned_cols=20 Identities=10% Similarity=0.127 Sum_probs=13.0
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 037537 531 AASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 531 ~~~g~~~~a~~~~~~m~~~g 550 (677)
+..|++.+|++++++.-...
T Consensus 165 a~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44567777777777765443
No 350
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.20 E-value=16 Score=24.05 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 525 MLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 525 ~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
-|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47889999999999999999988654
No 351
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.98 E-value=83 Score=30.40 Aligned_cols=135 Identities=13% Similarity=0.065 Sum_probs=82.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhH-------HHHHHHHHccCCChHHHHHHHHHHH----HhCCCCchhhHH
Q 037537 202 MVVAYGQHREGLEALQLFQEMVSLQLGLDMYT-------LASILTAFTSLEDLVGGLQFHAHLI----KSGFHQNSHIGS 270 (677)
Q Consensus 202 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-------~~~ll~a~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~ 270 (677)
+.+-.++.+++++|+..+.+....|+.-|..+ ...+...|...|+...-.+...... +..-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 34455667788888888888888887665544 4456667777777655444433322 222233445666
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhCCC-----CCh----hhHHHHHhhhcccCCCHHHHHHHHHHH----hhcCCCCCcchH
Q 037537 271 GLIDLYAKCSGDMRDCMKVFEEIPQ-----PDL----VLWNTMISGYSQKEEYSDQALGCFKKL----NRVGYHPDDCSF 337 (677)
Q Consensus 271 ~li~~y~~~g~~~~~A~~~f~~~~~-----~~~----~~~~~li~~~~~~~~~~~~A~~l~~~m----~~~g~~p~~~t~ 337 (677)
+|+..+-...+.+++-..+.....+ .-. ..-.-+|..+.+. |.+.+|+.+...+ .+-.-+|+..|.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~-~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKT-GKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 7777776665556666666554432 111 1223468888899 9999998876544 444556666554
No 352
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.98 E-value=1.3e+02 Score=27.45 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCC-cchHHHH-----HHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHH
Q 037537 67 SFNVLLAAYARQLRIASARQLFDQIPQPD-LVSYNTL-----ISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITA 140 (677)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 140 (677)
.|..++.... .+.+ +.....+.+...+ ..+|..+ ...++..|++++|..-++.-... |....+..++.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~- 129 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA- 129 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH-
Confidence 3444444442 3333 3333334444333 4455543 45778889999999988876642 33334433332
Q ss_pred hhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHH-----HHHHhCCCchHH
Q 037537 141 SSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMV-----VAYGQHREGLEA 215 (677)
Q Consensus 141 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li-----~~~~~~g~~~~A 215 (677)
-.|-......|.+++|.+.++.. ..+ .|.+++ ..+...|+-++|
T Consensus 130 ---------------------------lRLArvq~q~~k~D~AL~~L~t~-~~~---~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 130 ---------------------------LRLARVQLQQKKADAALKTLDTI-KEE---SWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred ---------------------------HHHHHHHHHhhhHHHHHHHHhcc-ccc---cHHHHHHHHhhhHHHHcCchHHH
Confidence 24556677789999999998887 433 355433 567888999999
Q ss_pred HHHHHHHHHCC
Q 037537 216 LQLFQEMVSLQ 226 (677)
Q Consensus 216 ~~~~~~m~~~g 226 (677)
..-|.+.++.+
T Consensus 179 r~ay~kAl~~~ 189 (207)
T COG2976 179 RAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHcc
Confidence 99988888765
No 353
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.95 E-value=13 Score=31.24 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=25.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 411 AQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
...|.-.+|..+|++|++.|-+|| .|+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 345667789999999999998888 566777655
No 354
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.83 E-value=41 Score=30.82 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=19.6
Q ss_pred CCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 466 GFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
...|+..+|..++.++...|+.++|.+..+++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566666666666666666666666665554
No 355
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=55.74 E-value=1.2e+02 Score=31.66 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=80.0
Q ss_pred HcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHH
Q 037537 412 QHGIGMEAL-RLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDA 490 (677)
Q Consensus 412 ~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (677)
..|+...|- ++|.-+....-.|+.+-+.+.| ..+.|+++.+.+.+...... +.....+..+++.-+.+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHH
Confidence 456655554 4566666655567766665555 56889999999998887653 455667888999999999999999
Q ss_pred HHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037537 491 ERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 491 ~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 551 (677)
..+-+.|..+ +++ ++.....-.-.--..|-++++.-.|++.-..+-
T Consensus 377 ~s~a~~~l~~-------------eie--~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 377 LSTAEMMLSN-------------EIE--DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHhcc-------------ccC--ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 9998887432 111 122222212222344668888888888766543
No 356
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.70 E-value=79 Score=26.40 Aligned_cols=60 Identities=15% Similarity=0.318 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHH
Q 037537 418 EALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID 479 (677)
Q Consensus 418 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 479 (677)
+..+-++......+.|++......|.||.+.+++..|.++|+-++.+ ..+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 34445566667788999999999999999999999999999998865 3344445666654
No 357
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=55.44 E-value=20 Score=20.21 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 521 VPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 521 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
..|..++..|...|++++|...++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4688899999999999999999987654
No 358
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=55.26 E-value=62 Score=30.00 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc
Q 037537 2 FRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH 62 (677)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 62 (677)
.+.-++...+.+.+.+++.....-++.. |.+...-..+++.++-.|++++|..-++-...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3445566667777777777777777665 56666677777777777777777755554433
No 359
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=53.81 E-value=26 Score=33.80 Aligned_cols=49 Identities=16% Similarity=0.046 Sum_probs=22.8
Q ss_pred HHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHh
Q 037537 40 FILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLF 88 (677)
Q Consensus 40 ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f 88 (677)
..+.|..+|.+.+|.+++++... .+...+-.|++.|+..|+--.|.+-+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khy 336 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHY 336 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHH
Confidence 33444555555555555554444 23334444555555555544443333
No 360
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.15 E-value=1.4e+02 Score=32.30 Aligned_cols=104 Identities=16% Similarity=0.041 Sum_probs=72.8
Q ss_pred HHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKY 457 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 457 (677)
...+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+..+ |..|+-.+...|+-+....+
T Consensus 646 lal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 344678888887776543 3566799999999999999999999988765 44666677777776654444
Q ss_pred HHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCC
Q 037537 458 FSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPF 499 (677)
Q Consensus 458 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (677)
-....+. |. .|.-.-+|...|+++++.+++.+-..
T Consensus 715 a~~~~~~-g~------~N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 715 ASLAKKQ-GK------NNLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred HHHHHhh-cc------cchHHHHHHHcCCHHHHHHHHHhcCc
Confidence 4444443 32 23334566778999999999987643
No 361
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.59 E-value=72 Score=25.99 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLE 428 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 428 (677)
-|..++.-|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888888888888888888776
No 362
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=52.25 E-value=76 Score=21.92 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 523 YVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 523 ~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
...|.-++.+.|++++|.+..+.+.+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34567789999999999999998876
No 363
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=51.65 E-value=1.4e+02 Score=28.06 Aligned_cols=151 Identities=18% Similarity=0.238 Sum_probs=89.2
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChH
Q 037537 169 SLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLV 248 (677)
Q Consensus 169 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 248 (677)
.-+..|++.-++.-|-..++++ .+|- .+--+ |--|.+..+.+---++.+-...+++.-+...+..++ +...||..
T Consensus 135 RtMEiyS~ttRFalaCN~s~KI-iEPI-QSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMR 209 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKI-IEPI-QSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMR 209 (333)
T ss_pred HHHHHHcccchhhhhhcchhhh-hhhH-HhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHH
Confidence 3456677777777776666666 4441 11112 222333333333334444445555554444444333 34566766
Q ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhc
Q 037537 249 GGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRV 328 (677)
Q Consensus 249 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~ 328 (677)
.|...++.-... -. .-.+..+|+-..+|.......|+..+.. ++.++|.+.+.++.+.
T Consensus 210 QalNnLQst~~g-------------------~g-~Vn~enVfKv~d~PhP~~v~~ml~~~~~--~~~~~A~~il~~lw~l 267 (333)
T KOG0991|consen 210 QALNNLQSTVNG-------------------FG-LVNQENVFKVCDEPHPLLVKKMLQACLK--RNIDEALKILAELWKL 267 (333)
T ss_pred HHHHHHHHHhcc-------------------cc-ccchhhhhhccCCCChHHHHHHHHHHHh--ccHHHHHHHHHHHHHc
Confidence 666555433211 11 4455677777778888888889988875 5789999999999999
Q ss_pred CCCCCcchHHHHHHHhhcc
Q 037537 329 GYHPDDCSFVCVISACSNL 347 (677)
Q Consensus 329 g~~p~~~t~~~ll~a~~~~ 347 (677)
|..|... .+++.+.|-..
T Consensus 268 gysp~Di-i~~~FRv~K~~ 285 (333)
T KOG0991|consen 268 GYSPEDI-ITTLFRVVKNM 285 (333)
T ss_pred CCCHHHH-HHHHHHHHHhc
Confidence 9988753 34455555443
No 364
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=50.45 E-value=3.4e+02 Score=28.84 Aligned_cols=240 Identities=8% Similarity=-0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc------------cChhHHHHHHHHHHhcCChhH
Q 037537 16 VTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH------------ANVFSFNVLLAAYARQLRIAS 83 (677)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~ 83 (677)
+...++++..++. -|+...++..|+.|...-.......+...+.- .....|..+.-.+.+.+...+
T Consensus 299 s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Q ss_pred HHHHhc-cCCCCCcchHHHHHHHHHhC--CChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCC
Q 037537 84 ARQLFD-QIPQPDLVSYNTLISAYADC--GDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGF 160 (677)
Q Consensus 84 A~~~f~-~m~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~ 160 (677)
+...+. +.-..|...|-.=++...+. .--..-.++|...+..-..+-...+++....-.-....-..|.......+-
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~ 456 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIG 456 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcC
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHH---HHHHhCCCchHHHHHHHHHHHCCCCCCHhHHH
Q 037537 161 DHYASVNNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMV---VAYGQHREGLEALQLFQEMVSLQLGLDMYTLA 235 (677)
Q Consensus 161 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 235 (677)
......-+.+++.+.+.|-..+|++++..+ -+.++++.|..+| ......| ..-+.++|+.|...=- .|+..|.
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg-~d~~lw~ 534 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG-ADSDLWM 534 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC-CChHHHH
Q ss_pred HHHHHHccCCChHHHHHHHHHHHH
Q 037537 236 SILTAFTSLEDLVGGLQFHAHLIK 259 (677)
Q Consensus 236 ~ll~a~~~~~~~~~a~~~~~~~~~ 259 (677)
.-+.--...|..+.+-+++..+.+
T Consensus 535 ~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 535 DYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHhhccCCCcccccHHHHHHHH
No 365
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.26 E-value=1.4e+02 Score=24.34 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHh
Q 037537 97 VSYNTLISAYADCGDTESALSLFKDMRE 124 (677)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (677)
.-|..|+..|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4699999999999999999999999887
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=49.25 E-value=42 Score=25.39 Aligned_cols=48 Identities=8% Similarity=0.046 Sum_probs=29.2
Q ss_pred ccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHH
Q 037537 447 HTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLI 494 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 494 (677)
+....++|...|....+...-.|+ -.+..+|+.+|+..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777766665222222 235666777777777777776653
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.66 E-value=54 Score=24.81 Aligned_cols=46 Identities=17% Similarity=0.094 Sum_probs=34.1
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHH
Q 037537 412 QHGIGMEALRLFEWMLETNIPPT--NITFVSVLSACAHTGKVAEGQKY 457 (677)
Q Consensus 412 ~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 457 (677)
...+.++|+..|+..++.-..|. -.++..++.+++..|++.+.+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999988887543333 24788888999999988887665
No 368
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.66 E-value=2e+02 Score=26.42 Aligned_cols=85 Identities=16% Similarity=0.114 Sum_probs=52.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccCh-HHHHHHHHHHh
Q 037537 409 GYAQHGIGMEALRLFEWMLETNIPPTN-----ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG-EHYSCMIDLLG 482 (677)
Q Consensus 409 ~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~ 482 (677)
-+..+|++++|..-|.+.++. ++|.. +.|..=..+..+.+.++.|..--...++ +.|+- .....-..+|.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAYE 179 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHHH
Confidence 456778888888888888874 33332 2233333455677777777776666554 34431 11122235677
Q ss_pred hcCChHHHHHHHHhC
Q 037537 483 RAGKLTDAERLIEAM 497 (677)
Q Consensus 483 ~~g~~~~A~~~~~~m 497 (677)
+..++++|++-++++
T Consensus 180 k~ek~eealeDyKki 194 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKI 194 (271)
T ss_pred hhhhHHHHHHHHHHH
Confidence 778888888877766
No 369
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.00 E-value=3.3e+02 Score=28.13 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=38.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHhHHh
Q 037537 409 GYAQHGIGMEALRLFEWMLETNIPPTNI--TFVSVLSACA--HTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 409 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~~ 464 (677)
.+..++++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344778899999999999987 666654 3444445554 355778888888877654
No 370
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.80 E-value=2.8e+02 Score=26.66 Aligned_cols=149 Identities=12% Similarity=0.134 Sum_probs=82.6
Q ss_pred hcCChhHHHHHHhhc-CCCCCee-----eHHHHHHHHHhCCCchHHHHHHHHHHH---CCCC--CCHhHHHHHHHHHccC
Q 037537 176 RNGFLDEAKRVFYEM-GEIKDEV-----SWNSMVVAYGQHREGLEALQLFQEMVS---LQLG--LDMYTLASILTAFTSL 244 (677)
Q Consensus 176 ~~g~~~~A~~~f~~m-~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--pd~~t~~~ll~a~~~~ 244 (677)
+...+++|..-|+++ ..++.-. +.-.+|..+.+.|++++.++.|.+|.. ..+. -+..+.++++.-.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345788898888887 2222222 334678899999999999999998853 1121 2345667777766666
Q ss_pred CChHHHHHHHHHHHHhC-CCCch----hhHHHHHHHHHHcCCCHHHHHHHHhhCCC------------C---ChhhHHHH
Q 037537 245 EDLVGGLQFHAHLIKSG-FHQNS----HIGSGLIDLYAKCSGDMRDCMKVFEEIPQ------------P---DLVLWNTM 304 (677)
Q Consensus 245 ~~~~~a~~~~~~~~~~g-~~~~~----~~~~~li~~y~~~g~~~~~A~~~f~~~~~------------~---~~~~~~~l 304 (677)
.+.+.-..+++.-++.= -..+. .+-+-|-..|...+. +..-.+++.++.+ + -...|..=
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e-~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGE-YTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHH-HHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 66666555554433210 00011 122344555555555 5566666655531 0 11345555
Q ss_pred HhhhcccCCCHHHHHHHHHHHh
Q 037537 305 ISGYSQKEEYSDQALGCFKKLN 326 (677)
Q Consensus 305 i~~~~~~~~~~~~A~~l~~~m~ 326 (677)
|..|... .+-.+-..++++..
T Consensus 198 IQmYT~q-KnNKkLK~lYeqal 218 (440)
T KOG1464|consen 198 IQMYTEQ-KNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhhh-cccHHHHHHHHHHH
Confidence 5666555 44444455555444
No 371
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.79 E-value=82 Score=21.17 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=19.3
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037537 411 AQHGIGMEALRLFEWMLETNIPPTNITFVSVLS 443 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 443 (677)
.+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666666666555555543
No 372
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.02 E-value=59 Score=21.84 Aligned_cols=39 Identities=15% Similarity=0.015 Sum_probs=32.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037537 5 VLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILL 43 (677)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 43 (677)
++-...+.|-..++..+++.|.+.|+..+...+..+++.
T Consensus 8 iL~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 8 ILLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 445566788888999999999999999999988888764
No 373
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.18 E-value=2.7e+02 Score=27.02 Aligned_cols=127 Identities=16% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChH-HHHHHHhhccc---------cChhHHHHHHHHHHhcCChhHHH
Q 037537 16 VTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLS-AAHHAFNQTQH---------ANVFSFNVLLAAYARQLRIASAR 85 (677)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~ 85 (677)
+.+.-+.+...+.+.+++......+++.+...+.-+ .-.++.+.+.+ .|+.....+...|.+.|++.+|+
T Consensus 31 DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~ 110 (260)
T PF04190_consen 31 DLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAE 110 (260)
T ss_dssp HHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHH
Q ss_pred HHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChh
Q 037537 86 QLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYAS 165 (677)
Q Consensus 86 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~ 165 (677)
+.|-.-..++...+-.++.-....|...++--..-+..
T Consensus 111 ~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaV------------------------------------------ 148 (260)
T PF04190_consen 111 RHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAV------------------------------------------ 148 (260)
T ss_dssp HHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHH------------------------------------------
T ss_pred HHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHH------------------------------------------
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhc
Q 037537 166 VNNSLLTCYSRNGFLDEAKRVFYEM 190 (677)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~f~~m 190 (677)
-.|.-.+++..|..+|+..
T Consensus 149 ------L~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 149 ------LQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp ------HHHHHTTBHHHHHHHHHHH
T ss_pred ------HHHHHhcCHHHHHHHHHHH
No 374
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=44.11 E-value=4e+02 Score=27.89 Aligned_cols=192 Identities=8% Similarity=-0.062 Sum_probs=86.8
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh-hHHHHHHHHHHhCCCC
Q 037537 84 ARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC-LIKQLHCLAIYCGFDH 162 (677)
Q Consensus 84 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~~i~~~~~~~g~~~ 162 (677)
...+.+.+..++.........++...+...-.-. +..+.+ .++...-...+.++...+. ....+...+. .+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~-L~~~L~---~~~p~vR~aal~al~~r~~~~~~~L~~~L~----d~ 159 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPW-LEPLLA---ASEPPGRAIGLAALGAHRHDPGPALEAALT----HE 159 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHH-HHHHhc---CCChHHHHHHHHHHHhhccChHHHHHHHhc----CC
Confidence 3444444444444455555555555544333322 233332 1233333344444444333 2222222211 45
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHc
Q 037537 163 YASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFT 242 (677)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 242 (677)
|..+-..-+..++..++.+..-.+-.-. ..+|...-..-+.+....|. .+|...+...... |+..+...+.....
T Consensus 160 d~~Vra~A~raLG~l~~~~a~~~L~~al-~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~la 234 (410)
T TIGR02270 160 DALVRAAALRALGELPRRLSESTLRLYL-RDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLA 234 (410)
T ss_pred CHHHHHHHHHHHHhhccccchHHHHHHH-cCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHH
Confidence 5556666666666666543333333223 44555555555666666666 5666555553322 22222222222222
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC
Q 037537 243 SLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ 295 (677)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~ 295 (677)
..+.. .+...+..+.+. ..+-...+.+.++.|+ ...+..+.+.|..
T Consensus 235 l~~~~-~a~~~L~~ll~d-----~~vr~~a~~AlG~lg~-p~av~~L~~~l~d 280 (410)
T TIGR02270 235 VAGGP-DAQAWLRELLQA-----AATRREALRAVGLVGD-VEAAPWCLEAMRE 280 (410)
T ss_pred hCCch-hHHHHHHHHhcC-----hhhHHHHHHHHHHcCC-cchHHHHHHHhcC
Confidence 22222 333333333322 1255566666677666 6666556555543
No 375
>PRK10941 hypothetical protein; Provisional
Probab=43.70 E-value=92 Score=30.31 Aligned_cols=61 Identities=18% Similarity=0.114 Sum_probs=51.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 474 YSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+.+-.+|.+.++++.|++..+.+ +.+.|+++.-+---+-+|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~l---------------l~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEAL---------------LQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344567789999999999998877 6788999988888899999999999999988877654
No 376
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=42.76 E-value=62 Score=34.59 Aligned_cols=127 Identities=14% Similarity=0.108 Sum_probs=85.3
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHH---HHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHH
Q 037537 386 EDARRLFDRMPEHNTVSLNSMIAG---YAQHGIGMEALRLFEWMLETNIPPT--NITFVSVLSACAHTGKVAEGQKYFSM 460 (677)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~ 460 (677)
+-|-.+|-.|.+++...|-+|=.+ ....|+...|...+...... .|- .+....|.+...+.|..-.|-.++..
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~--~p~~~~v~~v~la~~~~~~~~~~da~~~l~q 667 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNL--APLQQDVPLVNLANLLIHYGLHLDATKLLLQ 667 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhcc--ChhhhcccHHHHHHHHHHhhhhccHHHHHHH
Confidence 445566667777766666544221 23478888999888877653 343 35666777777888888888887776
Q ss_pred hHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 037537 461 MKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYA 531 (677)
Q Consensus 461 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~ 531 (677)
.... . ...+-++-.+.++|.-..+++.|++-|+.. +.++|+++..-+.|..+-+
T Consensus 668 ~l~~-~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a---------------~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 668 ALAI-N-SSEPLTFLSLGNAYLALKNISGALEAFRQA---------------LKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHhh-c-ccCchHHHhcchhHHHHhhhHHHHHHHHHH---------------HhcCCCChhhHHHHHHHHH
Confidence 6654 2 334556667778888888899998888765 4667777777666655433
No 377
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=42.51 E-value=1.6e+02 Score=22.79 Aligned_cols=44 Identities=20% Similarity=0.047 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc
Q 037537 147 LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM 190 (677)
Q Consensus 147 ~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 190 (677)
.-.++++.....|+..|+.++..+++...-+=.++...++++.|
T Consensus 26 eE~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 26 EEVELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44578888888899999999999998887777777778888877
No 378
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.23 E-value=3.1e+02 Score=27.06 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHH
Q 037537 168 NSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVS 224 (677)
Q Consensus 168 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 224 (677)
-.++..+-+.+++....+.+..+ ..+..-...+..+...|++..|+++..+..+
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i---~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQI---KTVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34556666666666666666666 3444556677888899999999999888765
No 379
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.03 E-value=34 Score=28.84 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=26.0
Q ss_pred HHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHh
Q 037537 106 YADCGDTESALSLFKDMREKRFDTDGFTLSGLITAS 141 (677)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 141 (677)
.-..|.-.+|-.+|+.|++.|-.||. |+.||.++
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34557788999999999999988874 55566543
No 380
>PRK11619 lytic murein transglycosylase; Provisional
Probab=40.65 E-value=5.7e+02 Score=28.70 Aligned_cols=117 Identities=9% Similarity=0.011 Sum_probs=68.6
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHH
Q 037537 413 HGIGMEALRLFEWMLETN-IPPTN--ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTD 489 (677)
Q Consensus 413 ~g~~~~A~~l~~~m~~~g-~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (677)
..+.+.|..++....... +.+.. .....+.......+..+++...++..... ..+.....--+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 445688888888875433 33332 22333333333332255666666654432 1244444444555558999999
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 490 AERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
+...|..|+.... ..+.-+.=+..++...|+.++|...|+...
T Consensus 331 ~~~~i~~L~~~~~---------------~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAK---------------EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhc---------------cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999863211 122233334667677899999999888863
No 381
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.54 E-value=53 Score=32.15 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVL 442 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 442 (677)
-||..|..-.+.|++++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 47788999999999999999999999988766566665444
No 382
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.94 E-value=2e+02 Score=23.33 Aligned_cols=52 Identities=8% Similarity=0.002 Sum_probs=27.8
Q ss_pred HHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 037537 377 AMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETN 430 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 430 (677)
..+...|++++|...=.....||...|-+|- -.+.|..+++...+.++-.+|
T Consensus 48 ~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 48 SSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 3455677777774444444556777776553 345666666666666665554
No 383
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=39.65 E-value=1.8e+02 Score=22.60 Aligned_cols=64 Identities=14% Similarity=0.045 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChhHH
Q 037537 19 KSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIASA 84 (677)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 84 (677)
.++++.+++.|+ .+......+-.+-...|+.+.|+++...+. ..+..|...++++-..|.-+-|
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 355566665552 222233333222224456666666666666 4455555566655555544433
No 384
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.23 E-value=2.1e+02 Score=23.26 Aligned_cols=78 Identities=10% Similarity=0.068 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHh
Q 037537 247 LVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLN 326 (677)
Q Consensus 247 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~ 326 (677)
.++|..+.+.+...+- ....+.-.-+..+...|+ +++|...=.....||...|-++-..-. |..+++...+.++.
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~-Yq~ALl~~~~~~~pdL~p~~AL~a~kl---GL~~~~e~~l~rla 96 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGD-YQEALLLPQCHCYPDLEPWAALCAWKL---GLASALESRLTRLA 96 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT--HHHHHHHHTTS--GGGHHHHHHHHHHC---T-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHH-HHHHHHhcccCCCccHHHHHHHHHHhh---ccHHHHHHHHHHHH
Confidence 4455555555555442 223333333445566677 888844444455689999988877644 77777877777776
Q ss_pred hcC
Q 037537 327 RVG 329 (677)
Q Consensus 327 ~~g 329 (677)
.+|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 654
No 385
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.17 E-value=62 Score=29.62 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=32.0
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 509 ANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 509 ~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+++.++..| ++..|..++.++...|+.++|.++.+++..
T Consensus 134 a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 134 AERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555 678899999999999999999999998875
No 386
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=38.94 E-value=1.6e+02 Score=24.77 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHh
Q 037537 214 EALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKS 260 (677)
Q Consensus 214 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 260 (677)
|..+-++....-.+.|+....-..++||.+.+|+..|..+++-+...
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455566667778899999999999999999999999999877643
No 387
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.20 E-value=74 Score=22.80 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=13.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC
Q 037537 474 YSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
--.+|.+|...|++++|.++++++
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334556666666666666666554
No 388
>PHA02875 ankyrin repeat protein; Provisional
Probab=38.01 E-value=4.9e+02 Score=27.11 Aligned_cols=78 Identities=13% Similarity=-0.019 Sum_probs=34.2
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHccCChHHHHHHHhhccccChh--HHHHHHHHHHhcCChhHH
Q 037537 9 CVGRRDLVTGKSLHALYLKNLVPFSAYL--SNHFILLYSKCGCLSAAHHAFNQTQHANVF--SFNVLLAAYARQLRIASA 84 (677)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A 84 (677)
.+..|+.+. .+.+++.|..++... ..+.+...++.|+.+-+.-+.+.-..++.. .....+...++.|+.+..
T Consensus 9 A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v 84 (413)
T PHA02875 9 AILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAV 84 (413)
T ss_pred HHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHH
Confidence 334455543 344445565444322 233444455666665555554433222111 011223334455555555
Q ss_pred HHHhcc
Q 037537 85 RQLFDQ 90 (677)
Q Consensus 85 ~~~f~~ 90 (677)
..+++.
T Consensus 85 ~~Ll~~ 90 (413)
T PHA02875 85 EELLDL 90 (413)
T ss_pred HHHHHc
Confidence 555543
No 389
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=37.02 E-value=2.7e+02 Score=23.84 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHHhcCCccC--hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 432 PPTNITFVSVLSACAHTG---KVAEGQKYFSMMKDMFGFEPE--GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 432 ~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.++..+--.+..++.++. ++.++..+++.+.+. . .|+ .+..--|.-++.|.|++++++++++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-A-HPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-c-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 455555555666666554 567888899988862 2 332 222223455688999999999999866
No 390
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=37.00 E-value=13 Score=26.80 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=16.7
Q ss_pred ceEEEecCCccccccCccccC
Q 037537 653 REITVRDTYRFHCFKDGRCSC 673 (677)
Q Consensus 653 ~~i~~~d~~~~h~f~~g~csc 673 (677)
..|=+.|.+..|+||||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 367789999999999998653
No 391
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.61 E-value=5.6e+02 Score=28.78 Aligned_cols=185 Identities=15% Similarity=0.267 Sum_probs=105.8
Q ss_pred CCCCeee---HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH----------hHHHHHHHHHccCCChHHHHHHHHHHH
Q 037537 192 EIKDEVS---WNSMVVAYGQHREGLEALQLFQEMVSLQLGLDM----------YTLASILTAFTSLEDLVGGLQFHAHLI 258 (677)
Q Consensus 192 ~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----------~t~~~ll~a~~~~~~~~~a~~~~~~~~ 258 (677)
..|++.+ -..|+-.|....+++..+++.+.++.. ||. +.|...++--.+.||-++|....--++
T Consensus 194 Dnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lv 270 (1226)
T KOG4279|consen 194 DNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLV 270 (1226)
T ss_pred CCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHH
Confidence 3444443 445566677778888888888888763 322 234445555556677777777766665
Q ss_pred Hh-C-CCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcc-
Q 037537 259 KS-G-FHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDC- 335 (677)
Q Consensus 259 ~~-g-~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~- 335 (677)
+. | +.|| +||-||+ +++.|- +-+.|... +..+.|.+.|++.-+ +.|+..
T Consensus 271 e~eg~vapD---------m~Cl~GR-------IYKDmF---------~~S~ytDa-~s~~~a~~WyrkaFe--veP~~~s 322 (1226)
T KOG4279|consen 271 EKEGPVAPD---------MYCLCGR-------IYKDMF---------IASNYTDA-ESLNHAIEWYRKAFE--VEPLEYS 322 (1226)
T ss_pred HhcCCCCCc---------eeeeech-------hhhhhh---------hccCCcch-hhHHHHHHHHHHHhc--cCchhhc
Confidence 53 2 3343 4566665 222221 12334445 667788888888765 466543
Q ss_pred --hHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHc
Q 037537 336 --SFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQH 413 (677)
Q Consensus 336 --t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 413 (677)
-+.++|.+-... .+...++ ..+.-.|-..++|.|.++.-...++- . ..+.+-.-.
T Consensus 323 GIN~atLL~aaG~~-Fens~El-------------q~IgmkLn~LlgrKG~leklq~YWdV------~---~y~~asVLA 379 (1226)
T KOG4279|consen 323 GINLATLLRAAGEH-FENSLEL-------------QQIGMKLNSLLGRKGALEKLQEYWDV------A---TYFEASVLA 379 (1226)
T ss_pred cccHHHHHHHhhhh-ccchHHH-------------HHHHHHHHHHhhccchHHHHHHHHhH------H---Hhhhhhhhc
Confidence 344555443221 1111111 11223344556788888888777643 2 233444556
Q ss_pred CChHHHHHHHHHHHHCC
Q 037537 414 GIGMEALRLFEWMLETN 430 (677)
Q Consensus 414 g~~~~A~~l~~~m~~~g 430 (677)
+++.+|++.-+.|.+..
T Consensus 380 nd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 380 NDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred cCHHHHHHHHHHHhccC
Confidence 78889999888888753
No 392
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.49 E-value=57 Score=31.91 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHH
Q 037537 199 WNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLA 235 (677)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 235 (677)
||..|....+.|++++|+.++++..+.|+.--..||.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 6678888888888888888888888877654444443
No 393
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=36.40 E-value=7e+02 Score=28.51 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=12.6
Q ss_pred hhcCChHHHHHHHHhC
Q 037537 482 GRAGKLTDAERLIEAM 497 (677)
Q Consensus 482 ~~~g~~~~A~~~~~~m 497 (677)
...|.+++|+.+++..
T Consensus 718 y~~~~~e~aL~~le~l 733 (835)
T KOG2168|consen 718 YHNGEWEEALSILEHL 733 (835)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 4678888888888765
No 394
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.16 E-value=2.4e+02 Score=27.97 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=38.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 406 MIAGYAQHGIGMEALRLFEWMLETNIPPTNI---TFVSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 406 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
+..+-.+.|+..+|.+.|+.+.+. .|-.. .-..+|.+|.....+.....++.+..+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455556789999999999998764 23222 234577888877777777666665543
No 395
>PF13934 ELYS: Nuclear pore complex assembly
Probab=35.72 E-value=3.8e+02 Score=25.27 Aligned_cols=111 Identities=20% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHH
Q 037537 403 LNSMIAGYAQ--HGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL 480 (677)
Q Consensus 403 ~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 480 (677)
|...+.||.. ++++++|++++ -+-.+.|+.... ++.++...|+.+.|.++++.+. ..-.+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L---~~ps~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELL---SHPSLIPWFPDK--ILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHh---CCCCCCcccHHH--HHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH
Q ss_pred HhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCch---hHHHHHHHHH----hcCChHHHHHH
Q 037537 481 LGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAV---PYVMLANIYA----ASGKWEEVATI 542 (677)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~---~~~~l~~~y~----~~g~~~~a~~~ 542 (677)
..+|.+.||..+.+..+ +.. .+..++..+. +.|+.++-..+
T Consensus 151 -La~~~v~EAf~~~R~~~--------------------~~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYP--------------------DELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred -HHcCCHHHHHHHHHhCc--------------------hhhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 396
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=35.70 E-value=5.1e+02 Score=26.63 Aligned_cols=90 Identities=17% Similarity=0.289 Sum_probs=59.5
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCCCCChHH-----------------------------HHHHHHHhccCCC----Cchh
Q 037537 476 CMIDLLGRAGKLTDAERLIEAMPFNPGSIA-----------------------------LKAANHFLQLEPS----NAVP 522 (677)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----------------------------~~~~~~l~~l~p~----~~~~ 522 (677)
.|...+-.+|++++|..++.+.+.+.-... .++-.+.|+- |+ ....
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~-~~~~~lKlky 214 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEK-PDVQELKLKY 214 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCC-ccHHHHHHHH
Confidence 455667788999999999988765432222 2222222221 11 1246
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEE
Q 037537 523 YVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQM 566 (677)
Q Consensus 523 ~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~ 566 (677)
|..++.+....+.+=++.+.++..-+-|..+...--|+.+-..+
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~i 258 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSI 258 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhh
Confidence 89999999999999999999999988776665444466544333
No 397
>PRK11619 lytic murein transglycosylase; Provisional
Probab=34.97 E-value=7e+02 Score=28.04 Aligned_cols=394 Identities=7% Similarity=-0.022 Sum_probs=190.0
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHH
Q 037537 71 LLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQ 150 (677)
Q Consensus 71 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 150 (677)
-+..+.+.+++....+.+.. +..+...--....+....|+.++|....+.+-..|.. .+.... .
T Consensus 105 ~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd--------------~ 168 (644)
T PRK11619 105 FVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACD--------------K 168 (644)
T ss_pred HHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHH--------------H
Confidence 33445566777777763322 2233333445666777778877777776666544422 222333 3
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 037537 151 LHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD 230 (677)
Q Consensus 151 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 230 (677)
++....+.|.-.+..+|.- +......|+...|..+...+ ..........++..+. ++..+..++.. +.|+
T Consensus 169 l~~~~~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l-~~~~~~~a~a~~al~~---~p~~~~~~~~~-----~~~~ 238 (644)
T PRK11619 169 LFSVWQQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQL-PADYQTIASALIKLQN---DPNTVETFART-----TGPT 238 (644)
T ss_pred HHHHHHHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhc-ChhHHHHHHHHHHHHH---CHHHHHHHhhc-----cCCC
Confidence 4444444444444444444 33444567777777777766 2211112223333222 22222222211 1122
Q ss_pred HhHHHHHHHHH--ccCCChHHHHHHHHHHHHhC-CCCch--hhHHHHHHHHHHcCCCHHHHHHHHhhCCCC--ChhhHHH
Q 037537 231 MYTLASILTAF--TSLEDLVGGLQFHAHLIKSG-FHQNS--HIGSGLIDLYAKCSGDMRDCMKVFEEIPQP--DLVLWNT 303 (677)
Q Consensus 231 ~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~~g-~~~~~--~~~~~li~~y~~~g~~~~~A~~~f~~~~~~--~~~~~~~ 303 (677)
...-..++-++ ....+.+.|..++..+.+.. +.+.. .+...+....+..+. .++|...++....+ |...+.-
T Consensus 239 ~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~-~~~a~~w~~~~~~~~~~~~~~e~ 317 (644)
T PRK11619 239 DFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDV-TDEQAKWRDDVIMRSQSTSLLER 317 (644)
T ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccC-CHHHHHHHHhcccccCCcHHHHH
Confidence 21111111122 12345577777777664432 32222 223333333333222 45566666665421 3222232
Q ss_pred HHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccC
Q 037537 304 MISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCG 383 (677)
Q Consensus 304 li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g 383 (677)
-+..-.+. ++++.+...+..|....-. . ..-.--+..++...|
T Consensus 318 r~r~Al~~-~dw~~~~~~i~~L~~~~~~-----------------------------------~-~rw~YW~aRa~~~~g 360 (644)
T PRK11619 318 RVRMALGT-GDRRGLNTWLARLPMEAKE-----------------------------------K-DEWRYWQADLLLEQG 360 (644)
T ss_pred HHHHHHHc-cCHHHHHHHHHhcCHhhcc-----------------------------------C-HhhHHHHHHHHHHcC
Confidence 33333355 7777777777776432110 0 222334555656678
Q ss_pred CHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHH
Q 037537 384 NLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN-----ITFVSVLSACAHTGKVAEGQKYF 458 (677)
Q Consensus 384 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~ 458 (677)
+.++|...|+..... .+|-.++.+- +.|..-. +.. ...++.. ..-..-+..+...|....|...+
T Consensus 361 ~~~~A~~~~~~~a~~--~~fYG~LAa~-~Lg~~~~-~~~------~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew 430 (644)
T PRK11619 361 RKAEAEEILRQLMQQ--RGFYPMVAAQ-RLGEEYP-LKI------DKAPKPDSALTQGPEMARVRELMYWNMDNTARSEW 430 (644)
T ss_pred CHHHHHHHHHHHhcC--CCcHHHHHHH-HcCCCCC-CCC------CCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999887553 2333333221 1222100 000 0000000 01122234456778899999988
Q ss_pred HHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHH
Q 037537 459 SMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEE 538 (677)
Q Consensus 459 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~ 538 (677)
..+... .+......+.....+.|..+.|........... .+.+ .-+..|.-.+..+++.-..+.
T Consensus 431 ~~~~~~----~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~----------~~~~--rfp~~~~~~~~~~a~~~~v~~ 494 (644)
T PRK11619 431 ANLVAS----RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWD----------HLEE--RFPLAWNDEFRRYTSGKGIPQ 494 (644)
T ss_pred HHHHhc----CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHH----------HHHH--hCCcchHHHHHHHHHHcCCCH
Confidence 888763 344455666666677888888877665432100 0111 112346667777766666666
Q ss_pred HHHHHHHHHhCCCccC
Q 037537 539 VATIRRLMRDRGVQKK 554 (677)
Q Consensus 539 a~~~~~~m~~~g~~~~ 554 (677)
++-.--..+|+++.|.
T Consensus 495 ~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 495 SYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHhcCCCCC
Confidence 5533333347787664
No 398
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.68 E-value=7.6e+02 Score=28.39 Aligned_cols=170 Identities=12% Similarity=0.072 Sum_probs=82.9
Q ss_pred HHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 037537 42 LLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKD 121 (677)
Q Consensus 42 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 121 (677)
+.|...|.+++|.++-+.-++.=..+.-.-...|...+++..|-+++.++ ..++..+.--+....+.+ ++..|-.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L~ 440 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFLD 440 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHHH
Confidence 45666777887777665442211112222234455566777777777765 334444444455555444 4443322
Q ss_pred hHhcCCCCCcccHHHHHHH---------hhcch--h---------hHHHHHHHHHH-hCCCCChhHHHHHHHHHHhcCCh
Q 037537 122 MREKRFDTDGFTLSGLITA---------SSNNL--C---------LIKQLHCLAIY-CGFDHYASVNNSLLTCYSRNGFL 180 (677)
Q Consensus 122 m~~~g~~p~~~t~~~ll~a---------~~~~~--~---------~~~~i~~~~~~-~g~~~~~~~~~~li~~~~~~g~~ 180 (677)
=+-..++|...+-..+|.. ..... + .-+.+-....+ .-...+.....+........|+.
T Consensus 441 KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~ 520 (911)
T KOG2034|consen 441 KKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQ 520 (911)
T ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCH
Confidence 2222233433332221111 11111 1 11111111111 11122333344555566666777
Q ss_pred hHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHH
Q 037537 181 DEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEM 222 (677)
Q Consensus 181 ~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 222 (677)
+++..+-.-| . -|..++.-+.+.+.+++|++++..-
T Consensus 521 e~ll~fA~l~-~-----d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 521 EELLQFANLI-K-----DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHH-H-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7766655555 1 2677788888888888888877554
No 399
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.61 E-value=1.8e+02 Score=31.77 Aligned_cols=88 Identities=23% Similarity=0.110 Sum_probs=60.9
Q ss_pred HHHHHHHhcCChhHHHHHHhhc-----CCCCCeeeHHHHHHHHHhCCCch------HHHHHHHHHHHCCCCCCHhHHHHH
Q 037537 169 SLLTCYSRNGFLDEAKRVFYEM-----GEIKDEVSWNSMVVAYGQHREGL------EALQLFQEMVSLQLGLDMYTLASI 237 (677)
Q Consensus 169 ~li~~~~~~g~~~~A~~~f~~m-----~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~pd~~t~~~l 237 (677)
+|..+|...|++-.+..+++.+ +.+.=...+|..|+.+.++|.++ .|.+++++.. +.-|.-||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888899999999999999887 22223445899999999999764 3334443333 55688999999
Q ss_pred HHHHccCCChHHHHHHHHHHHH
Q 037537 238 LTAFTSLEDLVGGLQFHAHLIK 259 (677)
Q Consensus 238 l~a~~~~~~~~~a~~~~~~~~~ 259 (677)
+.+....-+-..++-++..++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8887665444455555555544
No 400
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.20 E-value=4.9e+02 Score=26.02 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=11.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHH
Q 037537 199 WNSMVVAYGQHREGLEALQLFQEM 222 (677)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~~~~~m 222 (677)
|-....-|++-|+-+.|++.+++-
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Confidence 333444455555555555544433
No 401
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=34.16 E-value=3.5e+02 Score=26.42 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=44.0
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHH----
Q 037537 203 VVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAK---- 278 (677)
Q Consensus 203 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~---- 278 (677)
|.+++..+++.+++...-+--+.--+.-....-.-|-.|++.+.+....++-+..++..-..+..-|.++...|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5667777777776654433322211112223333334456666666666665555544323333345555555544
Q ss_pred -cCCCHHHHHHHH
Q 037537 279 -CSGDMRDCMKVF 290 (677)
Q Consensus 279 -~g~~~~~A~~~f 290 (677)
.|. +++|+++.
T Consensus 170 PLG~-~~eAeelv 181 (309)
T PF07163_consen 170 PLGH-FSEAEELV 181 (309)
T ss_pred cccc-HHHHHHHH
Confidence 355 66666654
No 402
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=34.00 E-value=1.1e+02 Score=24.56 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=45.1
Q ss_pred hhhhhhhhhHHHHHHHhhccCCCCCcEEEEecccccCCccchhhhHhhhcCceEEEecCC
Q 037537 602 KEKRLVHHSEKLAVAFGLLSTSYGEPILVMKNLRICGDCHNAIKFISAIAGREITVRDTY 661 (677)
Q Consensus 602 ~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~s~~~~~~i~~~d~~ 661 (677)
.+..|..|.|.-++--=-.+..+|..+.|---++-|..|..++.-.+.-.|-.|+-++.+
T Consensus 43 P~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 43 PESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred chhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 456688899875553222233348787777779999999999999999999999888743
No 403
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=33.50 E-value=1.4e+02 Score=20.58 Aligned_cols=29 Identities=31% Similarity=0.326 Sum_probs=16.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 037537 406 MIAGYAQHGIGMEALRLFEWMLETNIPPTNI 436 (677)
Q Consensus 406 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 436 (677)
+.-|+.+.|++++|.+..+.+++ +.|+-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 34456666677777776666666 455543
No 404
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.35 E-value=6.9e+02 Score=27.52 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=35.7
Q ss_pred cChhHHHHHHHHHHhcCChhHHHHHhccCCCCC-cchHHHHHHHHHhCCChhHHHHHHHHhHhcCC
Q 037537 63 ANVFSFNVLLAAYARQLRIASARQLFDQIPQPD-LVSYNTLISAYADCGDTESALSLFKDMREKRF 127 (677)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 127 (677)
+.+..++.|+..+... +.++-..+++++.. . ...|..++.+....|-.....-+.+.+....+
T Consensus 308 ~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 308 PAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred chHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 3444566666655433 44555555555443 2 45677777777777766655555555554443
No 405
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=32.94 E-value=5.6e+02 Score=26.29 Aligned_cols=64 Identities=19% Similarity=0.346 Sum_probs=49.6
Q ss_pred ChHHHHHH---HHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCC-CchhHHHHHHHHH-hcCChHHHHHHHH
Q 037537 470 EGEHYSCM---IDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPS-NAVPYVMLANIYA-ASGKWEEVATIRR 544 (677)
Q Consensus 470 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~-~~~~~~~l~~~y~-~~g~~~~a~~~~~ 544 (677)
|...|-++ |..+++.|.+..|.++.+-+ +.++|. |+..-..+|+-|+ ++++++--+++.+
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlL---------------lsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~ 163 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLL---------------LSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSE 163 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHH---------------HhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 44455554 56789999999999987755 688888 8888888888886 5778888888888
Q ss_pred HHHh
Q 037537 545 LMRD 548 (677)
Q Consensus 545 ~m~~ 548 (677)
....
T Consensus 164 ~~~~ 167 (360)
T PF04910_consen 164 SPLA 167 (360)
T ss_pred hHhh
Confidence 7654
No 406
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.76 E-value=3e+02 Score=23.12 Aligned_cols=42 Identities=7% Similarity=0.272 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 037537 418 EALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFS 459 (677)
Q Consensus 418 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 459 (677)
++.++|+.|..+|+--. ..-|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555544333 2334444444445555555555544
No 407
>PF15161 Neuropep_like: Neuropeptide-like
Probab=32.16 E-value=15 Score=25.04 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=12.3
Q ss_pred ecccccCCccchhhhHhh
Q 037537 632 KNLRICGDCHNAIKFISA 649 (677)
Q Consensus 632 ~nl~~~~~~~~~~~~~s~ 649 (677)
..-|-|.|||.+. |+.+
T Consensus 11 aesRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCCchhhHHHH-HHHH
Confidence 3468899999776 5543
No 408
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.07 E-value=1.1e+02 Score=25.72 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=19.7
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhc
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDR 394 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~ 394 (677)
...|......+.+.|++++|.++|+.
T Consensus 99 A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 99 ALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 56677777888888888888888864
No 409
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.94 E-value=2.5e+02 Score=29.22 Aligned_cols=66 Identities=9% Similarity=0.175 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHh-ccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 474 YSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFL-QLEPSNAVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~-~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
...|+++.+=.|++..|++.++.+...... ++ ..-+-...+|.-++-+|...+|+.+|.++|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~--------l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKG--------LYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccch--------hhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778889999999999988543221 11 2223456778889999999999999999998763
No 410
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.85 E-value=5.6e+02 Score=29.45 Aligned_cols=135 Identities=13% Similarity=0.130 Sum_probs=85.3
Q ss_pred HHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037537 377 AMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQK 456 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 456 (677)
+....||+++.|.+.-..+.+ ..+|..|...-..+|+.+-|.-.|++... |.-|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkldd--~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLDD--KDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcCc--HHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 344578999999887766654 45799999999999999999888887754 2222233556788877666
Q ss_pred HHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCh
Q 037537 457 YFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKW 536 (677)
Q Consensus 457 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~ 536 (677)
+......+ -|.... ... -.-.|+.++=.++++..... +.+|.. -+.+|.-
T Consensus 720 m~~iae~r----~D~~~~--~qn-alYl~dv~ervkIl~n~g~~-------------------~laylt----a~~~G~~ 769 (1202)
T KOG0292|consen 720 MMKIAEIR----NDATGQ--FQN-ALYLGDVKERVKILENGGQL-------------------PLAYLT----AAAHGLE 769 (1202)
T ss_pred HHHHHHhh----hhhHHH--HHH-HHHhccHHHHHHHHHhcCcc-------------------cHHHHH----HhhcCcH
Confidence 65554332 232211 111 11257888888888776422 122322 2456777
Q ss_pred HHHHHHHHHHHhCCCc
Q 037537 537 EEVATIRRLMRDRGVQ 552 (677)
Q Consensus 537 ~~a~~~~~~m~~~g~~ 552 (677)
++|.++.++....+..
T Consensus 770 ~~ae~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 770 DQAEKLGEELEKQVPS 785 (1202)
T ss_pred HHHHHHHHhhccccCC
Confidence 8888888887664443
No 411
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=31.80 E-value=88 Score=22.39 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 418 EALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 418 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
+..++++.+.. .+-|-.--..+|.++...|++++|.++.+.+.+.
T Consensus 8 ~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 8 ELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33444444433 1233344455677777777777777777766643
No 412
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.24 E-value=9e+02 Score=28.17 Aligned_cols=230 Identities=10% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHH---cCCCCChhhHHHHHHHHHccCCh--HHHHHHHhhccccChhHHHHHHHHHH
Q 037537 2 FRQVLKTCVGRRDLVTGKSLHALYLK---NLVPFSAYLSNHFILLYSKCGCL--SAAHHAFNQTQHANVFSFNVLLAAYA 76 (677)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~li~~~~ 76 (677)
|..|+..|...|+.+.|+++|..... ..-+.-..-+..+++...+.+.- +...+.-++..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl--------------- 571 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVL--------------- 571 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhh---------------
Q ss_pred hcCChhHHHHHhccCCCCCcchHH-HHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHH
Q 037537 77 RQLRIASARQLFDQIPQPDLVSYN-TLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLA 155 (677)
Q Consensus 77 ~~g~~~~A~~~f~~m~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~ 155 (677)
..+++...++|-.-......+.+ .-+-.|......+-+...++.+....-.++..-.+.++.-+.+.-.. +...
T Consensus 572 -~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~----~~~~ 646 (877)
T KOG2063|consen 572 -NKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLE----QAST 646 (877)
T ss_pred -ccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhh----ccCc
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHH
Q 037537 156 IYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLA 235 (677)
Q Consensus 156 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 235 (677)
...|-..-...+...+..+...-+.=....+++.. +.-...-..+++-+ +.|+.++|+.++-.-..
T Consensus 647 ~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~-~~~~l~ee~aill~--rl~khe~aL~Iyv~~L~----------- 712 (877)
T KOG2063|consen 647 DGKGEEAPETTVREKLLDFLESSDLYDPQLLLERL-NGDELYEERAILLG--RLGKHEEALHIYVHELD----------- 712 (877)
T ss_pred hhccccchhhhHHHHHHHHhhhhcccCcchhhhhc-cchhHHHHHHHHHh--hhhhHHHHHHHHHHHhc-----------
Q ss_pred HHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 037537 236 SILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLY 276 (677)
Q Consensus 236 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 276 (677)
+++.|..+....-+ ..+++...|-.++..|
T Consensus 713 ----------d~~~A~~Yc~~~y~-~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 713 ----------DIDAAESYCLPQYE-SDKTNKEIYLTLLRIY 742 (877)
T ss_pred ----------chhHHHHHHHHhcc-CCCcccHHHHHHHHHH
No 413
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=29.92 E-value=2.7e+02 Score=25.68 Aligned_cols=115 Identities=13% Similarity=0.111 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccccCh--hHHHHHHHHHHhcC
Q 037537 2 FRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANV--FSFNVLLAAYARQL 79 (677)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~g 79 (677)
.+.+++.|..+||++.|-+.|..+++.. +.|... -+.-+.+++.+...... .-++.|+..|....
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~------------~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~ 110 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRS------------LWGIGAEILMRRGEQNSELEFLEWLISFYPSRK 110 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHh------------cchHHHHHHHcCCCcchHHHHHHHHHHHHHHhh
Confidence 3578899999999999999999999875 333321 13344444443333111 34555666666443
Q ss_pred ChhHHHHH------hccCCC---CC---cchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCC
Q 037537 80 RIASARQL------FDQIPQ---PD---LVSYNTLISAYADCGDTESALSLFKDMREKRFDT 129 (677)
Q Consensus 80 ~~~~A~~~------f~~m~~---~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 129 (677)
.......- |..-.. |. ...|..++..-.+....+++.++.++|.+.=+.|
T Consensus 111 ~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~P 172 (199)
T PF04090_consen 111 AFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSP 172 (199)
T ss_pred hccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCC
Confidence 33322221 111111 11 1125555555544455566666766666544444
No 414
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.87 E-value=30 Score=34.26 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=62.6
Q ss_pred ccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHH
Q 037537 447 HTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVML 526 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l 526 (677)
..|.+++|.+.|...++. -.|....|.-=..++.+.++...|.+=++.. ++++|+....|-.-
T Consensus 126 n~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A---------------~ein~Dsa~~ykfr 188 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFA---------------IEINPDSAKGYKFR 188 (377)
T ss_pred cCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhh---------------hccCcccccccchh
Confidence 567788888888777653 1233444444445556666666665544433 57777777777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 037537 527 ANIYAASGKWEEVATIRRLMRDRGVQKKP 555 (677)
Q Consensus 527 ~~~y~~~g~~~~a~~~~~~m~~~g~~~~~ 555 (677)
..+-...|+|++|.+.+....+.++....
T Consensus 189 g~A~rllg~~e~aa~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACKLDYDEAN 217 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHhccccHHH
Confidence 77777889999999999998888876543
No 415
>PRK13342 recombination factor protein RarA; Reviewed
Probab=29.73 E-value=6.7e+02 Score=26.24 Aligned_cols=114 Identities=17% Similarity=0.060 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHH---CCC-CCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHH
Q 037537 213 LEALQLFQEMVS---LQL-GLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMK 288 (677)
Q Consensus 213 ~~A~~~~~~m~~---~g~-~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~ 288 (677)
++...+++.... .|+ ..+......++..+ .|++..+..+++.+...+-..+ .+...+
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It-----------------~~~v~~ 214 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSIT-----------------LELLEE 214 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC-----------------HHHHHH
Confidence 444445544432 233 44555555555443 6888888887777654321111 233333
Q ss_pred HHhhCC---CCChhhHHHHHhhhcc---cCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhc
Q 037537 289 VFEEIP---QPDLVLWNTMISGYSQ---KEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSN 346 (677)
Q Consensus 289 ~f~~~~---~~~~~~~~~li~~~~~---~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 346 (677)
++.... .++...+..+++++.+ . .+++.|+..+..|.+.|..|....-..+..++..
T Consensus 215 ~~~~~~~~~d~~~~~~~~~isa~~ks~rg-sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 215 ALQKRAARYDKDGDEHYDLISALHKSIRG-SDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHhhhhhccCCCccHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 332211 1222233444444443 4 6889999999999999988875544444444333
No 416
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=29.54 E-value=72 Score=24.11 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 037537 580 KEIHNYLEEMSRKMKQAGYVPD 601 (677)
Q Consensus 580 ~~i~~~l~~l~~~~~~~g~~pd 601 (677)
.++.+.+++...+++..|+.||
T Consensus 8 i~il~~ie~~inELk~dG~ePD 29 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPD 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHhcCCCCC
Confidence 4567788888889999999999
No 417
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.26 E-value=1.9e+02 Score=22.27 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=27.1
Q ss_pred HccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHH
Q 037537 380 SKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEA 419 (677)
Q Consensus 380 ~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 419 (677)
+...+.+.|.++++.++.+...+|.++..++...|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445667777777777777777777777777766654433
No 418
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=29.23 E-value=7.1e+02 Score=26.92 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=19.0
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCC
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMP 396 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~ 396 (677)
..|+.-|.+++++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 467778888888888888888775
No 419
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=28.95 E-value=7e+02 Score=26.17 Aligned_cols=56 Identities=14% Similarity=0.241 Sum_probs=29.2
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMPEH---NTVSLNSMIAGYAQHGIGMEALRLFEWMLET 429 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 429 (677)
.|+.-|.-.|++.+|.+...++.-| ..+.+-+++.+.-+.|+-...+.+++..-..
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s 572 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS 572 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4555566666666666666655433 2344555555555555544444444444333
No 420
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.88 E-value=2.7e+02 Score=29.97 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC--CCcc---hHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCc
Q 037537 68 FNVLLAAYARQLRIASARQLFDQIPQ--PDLV---SYNTLISAYADCGDTESALSLFKDMREKRFDTDG 131 (677)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 131 (677)
...|+.-|.+++++++|..++..|.= -... +.+.+.+.+.+..--++....++.+...=..|..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~r 479 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTR 479 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCc
Confidence 34678899999999999999988852 1122 3445566666666666666677776654333443
No 421
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.37 E-value=8e+02 Score=26.72 Aligned_cols=118 Identities=15% Similarity=0.130 Sum_probs=70.6
Q ss_pred HHHHHHhcCCChHHHHH-------HHHHHHHcCCCC-------------ChhhHHHH---HHHHHccCChHHHHHHHhhc
Q 037537 4 QVLKTCVGRRDLVTGKS-------LHALYLKNLVPF-------------SAYLSNHF---ILLYSKCGCLSAAHHAFNQT 60 (677)
Q Consensus 4 ~ll~~~~~~~~~~~a~~-------~~~~~~~~~~~~-------------~~~~~~~l---l~~~~~~g~~~~a~~~~~~~ 60 (677)
.+...|..+|+.+-+.. .++.+....+.| +...|.+| ++..++.|.+..|.+.-.-+
T Consensus 289 qva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKll 368 (665)
T KOG2422|consen 289 QVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLL 368 (665)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34457777777655544 444444444333 22334443 45567889999998877766
Q ss_pred cc----cChhHHHHHHHHHH-hcCChhHHHHHhccCCC-------CCcchHH-HHHHHHHhCCC---hhHHHHHHHHh
Q 037537 61 QH----ANVFSFNVLLAAYA-RQLRIASARQLFDQIPQ-------PDLVSYN-TLISAYADCGD---TESALSLFKDM 122 (677)
Q Consensus 61 ~~----~~~~~~~~li~~~~-~~g~~~~A~~~f~~m~~-------~~~~~~~-~li~~~~~~g~---~~~A~~~~~~m 122 (677)
.. .|+...-.+|+.|+ +..++..-+++|+.... || ..|. +|...|.+... -..|+..+.+.
T Consensus 369 lsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qA 445 (665)
T KOG2422|consen 369 LSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQA 445 (665)
T ss_pred hhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHH
Confidence 66 47778888888775 56778888887776532 33 3444 45555555444 23444444443
No 422
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=28.34 E-value=6.1e+02 Score=25.31 Aligned_cols=16 Identities=19% Similarity=0.578 Sum_probs=8.5
Q ss_pred hhcCChHHHHHHHHhC
Q 037537 482 GRAGKLTDAERLIEAM 497 (677)
Q Consensus 482 ~~~g~~~~A~~~~~~m 497 (677)
.|.|++.||.+.++.+
T Consensus 286 RklGrlrEA~K~~RDL 301 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDL 301 (556)
T ss_pred HHhhhHHHHHHHHHHH
Confidence 3455555555555544
No 423
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=28.07 E-value=2.9e+02 Score=21.50 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=27.2
Q ss_pred hcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHH
Q 037537 176 RNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEAL 216 (677)
Q Consensus 176 ~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~ 216 (677)
..|+.+.|+++++.+ + +....|..++.++-+.|.-.-|.
T Consensus 48 ~~g~~~~ar~LL~~L-~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRI-V-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHh-c-cCCcHHHHHHHHHHHcCchhhhh
Confidence 457777788888877 5 66667777777777776655443
No 424
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=27.99 E-value=79 Score=32.95 Aligned_cols=78 Identities=15% Similarity=0.044 Sum_probs=50.9
Q ss_pred CChhHHHHHHhhcCCCCCeeeHHHHHHHHHh-----------CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCC
Q 037537 178 GFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQ-----------HREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLED 246 (677)
Q Consensus 178 g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~-----------~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 246 (677)
=++++|.+..+.+ |..-.+...+...-+ -+.+++-+++++.+.+.|- +| ....-|++|.+.++
T Consensus 28 vd~~eav~y~k~~---p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g~-ad--~lp~TIDSyTR~n~ 101 (480)
T TIGR01503 28 VDLQDAVDYHKSI---PAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEGG-AD--FLPSTIDAYTRQNR 101 (480)
T ss_pred CCHHHHHHHHHhC---CccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHccC-CC--ccceeeeccccccc
Confidence 3677888877777 333333433333332 2446788888888887752 23 33445788899999
Q ss_pred hHHHHHHHHHHHHhC
Q 037537 247 LVGGLQFHAHLIKSG 261 (677)
Q Consensus 247 ~~~a~~~~~~~~~~g 261 (677)
++.|.+.+..-++.|
T Consensus 102 y~~A~~~l~~s~~~~ 116 (480)
T TIGR01503 102 YDEAAVGIKESIKAG 116 (480)
T ss_pred HHHHHHHHHhhhhcC
Confidence 999999888777643
No 425
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=26.59 E-value=3.5e+02 Score=21.90 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=9.9
Q ss_pred HHHHHHhCCCchHHHHHHHHH
Q 037537 202 MVVAYGQHREGLEALQLFQEM 222 (677)
Q Consensus 202 li~~~~~~g~~~~A~~~~~~m 222 (677)
++..|...+++++|.+.+.++
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 344444445555555544444
No 426
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.54 E-value=8.3e+02 Score=29.17 Aligned_cols=156 Identities=16% Similarity=0.171 Sum_probs=91.8
Q ss_pred HHHHHccCCHHHHHHHHhcCCC-------------------C------C-------cchHHHHHHHHHHcCChHHHHHHH
Q 037537 376 VAMYSKCGNLEDARRLFDRMPE-------------------H------N-------TVSLNSMIAGYAQHGIGMEALRLF 423 (677)
Q Consensus 376 i~~y~k~g~~~~A~~~~~~~~~-------------------~------~-------~~~~~~li~~~~~~g~~~~A~~l~ 423 (677)
..+|..+|...+|...|.+... + + ..-|-..++-+-+++-.+++.++-
T Consensus 927 g~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA 1006 (1480)
T KOG4521|consen 927 GIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLA 1006 (1480)
T ss_pred heeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3447788888899888875531 0 1 112556778888899999998888
Q ss_pred HHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccCh----HHHHHHHHHHhhcCChHHHHHHHH
Q 037537 424 EWMLETNIPPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG----EHYSCMIDLLGRAGKLTDAERLIE 495 (677)
Q Consensus 424 ~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~ 495 (677)
...++. ++|| ..+++.+.+-....|.+-+|... +.+ .||. .....++-.+..+|.++.-.+
T Consensus 1007 ~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a---i~~----npdserrrdcLRqlvivLfecg~l~~L~~--- 1075 (1480)
T KOG4521|consen 1007 VKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKA---ILR----NPDSERRRDCLRQLVIVLFECGELEALAT--- 1075 (1480)
T ss_pred HHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHH---HHc----CCcHHHHHHHHHHHHHHHHhccchHHHhh---
Confidence 887774 3443 24566666666777777666543 333 2543 345667778888888764333
Q ss_pred hCCCCC--ChHHHHHHHHHhccCCC-CchhHHHHHHHHHhcCChHHHHHHH
Q 037537 496 AMPFNP--GSIALKAANHFLQLEPS-NAVPYVMLANIYAASGKWEEVATIR 543 (677)
Q Consensus 496 ~m~~~~--~~~~~~~~~~l~~l~p~-~~~~~~~l~~~y~~~g~~~~a~~~~ 543 (677)
+|.-+ +.+.....+..-+..|- ....|..|-.-+...++|.+|..+.
T Consensus 1076 -fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1076 -FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred -CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 43311 11111011111122221 2235666666677888998887653
No 427
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=26.42 E-value=27 Score=18.41 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=7.9
Q ss_pred CCccchhhhHhh
Q 037537 638 GDCHNAIKFISA 649 (677)
Q Consensus 638 ~~~~~~~~~~s~ 649 (677)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 346777777763
No 428
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=26.39 E-value=7.7e+02 Score=25.83 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=56.5
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHT 448 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 448 (677)
..+-..-+..+++.+..+..-.+-.-....|...-..-+.+....|. .+|......... .|+..+...+.......
T Consensus 161 ~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 161 ALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLAVA 236 (410)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHHhC
Confidence 33334444455555543333333333334555555555666666666 566655555332 22222222222222222
Q ss_pred CCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCC
Q 037537 449 GKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 449 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (677)
|.. ++...+..+.+. +. +-...+.++++.|+..-..-+++.|.
T Consensus 237 ~~~-~a~~~L~~ll~d----~~--vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 237 GGP-DAQAWLRELLQA----AA--TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred Cch-hHHHHHHHHhcC----hh--hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 322 444444444332 22 44556667777777776666666664
No 429
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.30 E-value=5.5e+02 Score=27.79 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 037537 523 YVMLANIYAASGKWEEVATIRRLMRDRGVQ 552 (677)
Q Consensus 523 ~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 552 (677)
...|+++. ..++.++|..+++.+...|..
T Consensus 245 if~Li~al-~~~d~~~Al~~l~~Ll~~G~~ 273 (504)
T PRK14963 245 LRGIAAAL-AQGDAAEALSGAAQLYRDGFA 273 (504)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCC
Confidence 44444544 447777788877777777744
No 430
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=25.98 E-value=4.5e+02 Score=26.42 Aligned_cols=88 Identities=11% Similarity=0.236 Sum_probs=51.6
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCC--ccChHHH--HHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCC
Q 037537 444 ACAHTGKVAEGQKYFSMMKDMFGF--EPEGEHY--SCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSN 519 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~ 519 (677)
..-+.++.++|.++++++.+.... .|+...| ..+...+...|++.++.+++++.. ...+.+..+.|.-
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~--------~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLK--------SMLDSLDGVTSNV 155 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHH--------HHHhcccCCChhh
Confidence 334555788888888888765322 3444444 344566667888888888887652 1222233444434
Q ss_pred chhHHHHHHHHHh-cCChHHH
Q 037537 520 AVPYVMLANIYAA-SGKWEEV 539 (677)
Q Consensus 520 ~~~~~~l~~~y~~-~g~~~~a 539 (677)
...|..++.-|.+ -|++...
T Consensus 156 h~~fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASY 176 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHH
Confidence 4566677666655 3555544
No 431
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=25.95 E-value=2e+02 Score=26.24 Aligned_cols=58 Identities=14% Similarity=0.276 Sum_probs=34.6
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCC------CCcchHHHHHH-HHHHcCC--hHHHHHHHHHHHHCC
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPE------HNTVSLNSMIA-GYAQHGI--GMEALRLFEWMLETN 430 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~~g 430 (677)
+...-.....|++++|.+-++.+.+ +-...|..+.. +++.++. +-+|.-++.-....+
T Consensus 33 s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~ 99 (204)
T COG2178 33 SGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGR 99 (204)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCC
Confidence 3444445567888888888877653 23445666655 5666554 446666666555543
No 432
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=25.78 E-value=6.5e+02 Score=24.76 Aligned_cols=52 Identities=10% Similarity=0.188 Sum_probs=28.1
Q ss_pred CCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC-----CCChhhHHHHHhhhcccCCCHH
Q 037537 263 HQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP-----QPDLVLWNTMISGYSQKEEYSD 316 (677)
Q Consensus 263 ~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~~~~~~ 316 (677)
.++..+...++..+++.++ +..-.+.++... ..|...|..+|...... |+..
T Consensus 199 ~l~~~vi~~Il~~L~~~~d-W~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~s-gD~~ 255 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRD-WNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVES-GDQE 255 (292)
T ss_pred CCChhHHHHHHHHHHhccc-HHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHc-CCHH
Confidence 4444555555555555555 555555554432 24555666666666666 5543
No 433
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=25.61 E-value=4.9e+02 Score=26.15 Aligned_cols=82 Identities=15% Similarity=0.207 Sum_probs=43.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHH--HHHHHhccCCHHHHHHHHHHhHH-----hcCCccChH-HHH
Q 037537 407 IAGYAQHGIGMEALRLFEWMLET---NIPPTNITFVS--VLSACAHTGKVAEGQKYFSMMKD-----MFGFEPEGE-HYS 475 (677)
Q Consensus 407 i~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~--ll~a~~~~g~~~~a~~~~~~m~~-----~~~~~p~~~-~~~ 475 (677)
+...-+.++.++|++.++++.+. --.|+.+.|.. ....+...|+.+++++.++...+ . +++|++. .|.
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~-~v~~~Vh~~fY 160 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLD-GVTSNVHSSFY 160 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccc-CCChhhhhhHH
Confidence 33344455667777777776542 12455554433 33344566777777777776665 3 5555433 244
Q ss_pred HHHHHH-hhcCChHH
Q 037537 476 CMIDLL-GRAGKLTD 489 (677)
Q Consensus 476 ~li~~~-~~~g~~~~ 489 (677)
.+-.-| -+.|++..
T Consensus 161 ~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHhHHH
Confidence 443333 34455443
No 434
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.15 E-value=1.1e+03 Score=27.26 Aligned_cols=157 Identities=13% Similarity=0.094 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHhCCCCChhH----HHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHH
Q 037537 147 LIKQLHCLAIYCGFDHYASV----NNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEM 222 (677)
Q Consensus 147 ~~~~i~~~~~~~g~~~~~~~----~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 222 (677)
-+..+..++.+.|++--... -..-......||+++.|.+.-..+ -|...|.-|.......|+.+-|...|++.
T Consensus 622 vGqaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkl---dd~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 622 VGQAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKL---DDKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred ccHHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 46677778888886421110 022234567899999999988887 45568999999999999999999999887
Q ss_pred HHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHH
Q 037537 223 VSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWN 302 (677)
Q Consensus 223 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~ 302 (677)
+. |..|--.|.-.|+.++-.++...+.... | .+..-...+|. |+ +++-.++++.-...+.. |
T Consensus 699 kn---------fekLsfLYliTgn~eKL~Km~~iae~r~---D-~~~~~qnalYl--~d-v~ervkIl~n~g~~~la-y- 760 (1202)
T KOG0292|consen 699 KN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN---D-ATGQFQNALYL--GD-VKERVKILENGGQLPLA-Y- 760 (1202)
T ss_pred hh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh---h-hHHHHHHHHHh--cc-HHHHHHHHHhcCcccHH-H-
Confidence 65 2222223455677777666655553321 1 11111222232 56 88888888776554332 2
Q ss_pred HHHhhhcccCCCHHHHHHHHHHHhhc
Q 037537 303 TMISGYSQKEEYSDQALGCFKKLNRV 328 (677)
Q Consensus 303 ~li~~~~~~~~~~~~A~~l~~~m~~~ 328 (677)
+.+. .+ |.-++|.++.++....
T Consensus 761 --lta~-~~-G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 761 --LTAA-AH-GLEDQAEKLGEELEKQ 782 (1202)
T ss_pred --HHHh-hc-CcHHHHHHHHHhhccc
Confidence 1111 13 7778888888887654
No 435
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.08 E-value=4.7e+02 Score=25.80 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=33.7
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhc
Q 037537 70 VLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREK 125 (677)
Q Consensus 70 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 125 (677)
.++..+.+..+.......+..+. .+..-...+..+...|++..|+++..+..+.
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~ 156 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQL 156 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34444444444444444444432 3334456678888999999999999887653
No 436
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=25.01 E-value=5.1e+02 Score=28.18 Aligned_cols=144 Identities=17% Similarity=0.156 Sum_probs=93.0
Q ss_pred CCCCCcchHHHHHHHhhccC---hhHHHHHHHHHHHhhcccCccchhHHHHHHH-HccCCHHHHHHHHhcCC----CCCc
Q 037537 329 GYHPDDCSFVCVISACSNLS---PSLGKQIHALTIKIEIRSNRISVNNALVAMY-SKCGNLEDARRLFDRMP----EHNT 400 (677)
Q Consensus 329 g~~p~~~t~~~ll~a~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y-~k~g~~~~A~~~~~~~~----~~~~ 400 (677)
.-.|+..|..+++.-..... .+.|..++..+ +....|. -... .+...| ...|+...|.+.+.... ...-
T Consensus 566 ~~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~-~~~~~p~-w~~l-n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~ 642 (886)
T KOG4507|consen 566 AKMPDDHARKILLSRINNYTIPEEEIGSFLFHAI-NKPNAPI-WLIL-NEAGLYWRAVGNSTFAIACLQRALNLAPLQQD 642 (886)
T ss_pred ccCchHHHHHHHHHHHhcccCcHHHHHHHHHHHh-cCCCCCe-EEEe-ecccceeeecCCcHHHHHHHHHHhccChhhhc
Confidence 34577778777777766665 33333343333 3322222 1222 233334 34688888887766543 3344
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHH
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMID 479 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 479 (677)
++...|.....+.|...+|-.++.+.+... ...+.++..+-+++.-..+++.|++.|+...+. .| +.+.-+.|..
T Consensus 643 v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~---~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 643 VPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL---TTKCPECENSLKL 718 (886)
T ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc---CCCChhhHHHHHH
Confidence 556667777778888889999998887754 445678889999999999999999999988754 44 3455555543
No 437
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=24.83 E-value=5.4e+02 Score=25.74 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=19.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH-hCCCcc
Q 037537 525 MLANIYAASGKWEEVATIRRLMR-DRGVQK 553 (677)
Q Consensus 525 ~l~~~y~~~g~~~~a~~~~~~m~-~~g~~~ 553 (677)
.++++. ..|++++|..++..|. +.|+.+
T Consensus 257 ~l~~ai-~~~~~~~a~~~l~~l~~~~g~~~ 285 (337)
T PRK12402 257 SLLDAA-EAGDFTDARKTLDDLLIDEGLSG 285 (337)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHHcCCCH
Confidence 444433 4578889999988886 667653
No 438
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.80 E-value=3.2e+02 Score=24.74 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=12.9
Q ss_pred HHHHHHhcCChhHHHHHhccCC
Q 037537 71 LLAAYARQLRIASARQLFDQIP 92 (677)
Q Consensus 71 li~~~~~~g~~~~A~~~f~~m~ 92 (677)
.+-.|.+.|.+++|.++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHh
Confidence 3445566666666666666544
No 439
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=24.59 E-value=1.6e+02 Score=22.73 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=15.3
Q ss_pred CChHHHHHHHhhccccChhHHHHHHHHHHhcCC
Q 037537 48 GCLSAAHHAFNQTQHANVFSFNVLLAAYARQLR 80 (677)
Q Consensus 48 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (677)
.+.+++.++.+.++...+.+|....+++-..|.
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 334444444444444444444444444444443
No 440
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=24.36 E-value=1.8e+02 Score=24.69 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=51.6
Q ss_pred EEEEEeCC-CCCCCHHHHHHHHHHHHHHHHHcCCccchhhhhhhhhHHHHHHHhhccCCCCCcEEEEeccc------ccC
Q 037537 566 MHVFVAED-GSHPMIKEIHNYLEEMSRKMKQAGYVPDKEKRLVHHSEKLAVAFGLLSTSYGEPILVMKNLR------ICG 638 (677)
Q Consensus 566 ~~~~~~~~-~~~~~~~~i~~~l~~l~~~~~~~g~~pd~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~nl~------~~~ 638 (677)
.-.|..|| ..+|+...+--.|+++.+++....+.. ...-..+...+|..||+.+.|. +.++||=. --.
T Consensus 37 ~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~--akVDiD~~~~LA~~fgV~siPT---Ll~FkdGk~v~~i~G~~ 111 (132)
T PRK11509 37 GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQV--AIADLEQSEAIGDRFGVFRFPA---TLVFTGGNYRGVLNGIH 111 (132)
T ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEE--EEEECCCCHHHHHHcCCccCCE---EEEEECCEEEEEEeCcC
Confidence 34578887 568999999889999988874211111 0111346688999999988873 55666521 122
Q ss_pred CccchhhhHhhhcCc
Q 037537 639 DCHNAIKFISAIAGR 653 (677)
Q Consensus 639 ~~~~~~~~~s~~~~~ 653 (677)
+.....+.|.++.+|
T Consensus 112 ~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 112 PWAELINLMRGLVEP 126 (132)
T ss_pred CHHHHHHHHHHHhcC
Confidence 445555566655554
No 441
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=24.28 E-value=1.3e+02 Score=22.43 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=28.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 037537 410 YAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG 449 (677)
Q Consensus 410 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 449 (677)
....|+.+.+.+++++..+.|+.|.......+..+....|
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3456888899999999998888887776666666655444
No 442
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.05 E-value=2.5e+02 Score=26.88 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=9.0
Q ss_pred HHhccCCHHHHHHHHHHhH
Q 037537 444 ACAHTGKVAEGQKYFSMMK 462 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~ 462 (677)
-|.+.|++++|.++|+.+.
T Consensus 187 ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 187 EYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 3444445555555544443
No 443
>PRK10941 hypothetical protein; Provisional
Probab=23.95 E-value=6.8e+02 Score=24.39 Aligned_cols=59 Identities=15% Similarity=0.034 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
+.+-.+|.+.++++.|+...+.+.. +.|+ ..-+.--.-.+.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3344455555555555555555555 2333 222222222344555555555544444443
No 444
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=23.69 E-value=1.3e+02 Score=18.78 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 037537 522 PYVMLANIYAASGKWEEVATIRR 544 (677)
Q Consensus 522 ~~~~l~~~y~~~g~~~~a~~~~~ 544 (677)
.+..+.-.+-..|++++|.++++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45677888899999999999954
No 445
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=23.49 E-value=7.8e+02 Score=24.89 Aligned_cols=89 Identities=12% Similarity=0.023 Sum_probs=50.5
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHH-HHHHHHHHCCCCCCHhHHHHHHHHHccCCCh
Q 037537 169 SLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEAL-QLFQEMVSLQLGLDMYTLASILTAFTSLEDL 247 (677)
Q Consensus 169 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 247 (677)
.+-+.+++.++.+.+..+-..+ ..--.....+|..++-...-.+... .+++..... ||......++++.+.....
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al-~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~ 246 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKAL-PHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPAS 246 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHH-hhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCch
Confidence 4556677777666665555555 2222333445555544444333333 333333333 7888888888888877766
Q ss_pred HHHHHHHHHHHHhC
Q 037537 248 VGGLQFHAHLIKSG 261 (677)
Q Consensus 248 ~~a~~~~~~~~~~g 261 (677)
......+..+++..
T Consensus 247 ~~~~~~i~~~L~~~ 260 (340)
T PF12069_consen 247 DLVAILIDALLQSP 260 (340)
T ss_pred hHHHHHHHHHhcCc
Confidence 66666566666554
No 446
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=23.38 E-value=3e+02 Score=21.51 Aligned_cols=35 Identities=9% Similarity=0.213 Sum_probs=22.8
Q ss_pred ccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCC
Q 037537 381 KCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGI 415 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 415 (677)
..-+.+.+.++++.++.+...+|..+..++...|.
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 34456677777777777777777777776655443
No 447
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.34 E-value=6.5e+02 Score=23.95 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCC
Q 037537 313 EYSDQALGCFKKLNRVGYHPD 333 (677)
Q Consensus 313 ~~~~~A~~l~~~m~~~g~~p~ 333 (677)
+++.+|+++|++.....+..+
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHhccch
Confidence 778888888888876554433
No 448
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=23.26 E-value=3.7e+02 Score=21.01 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=30.4
Q ss_pred HHhcCCChHHHHHH----HHHHHHcCCCCC----hhhHHHHHHHHHccCChHHHHHHHhhccc
Q 037537 8 TCVGRRDLVTGKSL----HALYLKNLVPFS----AYLSNHFILLYSKCGCLSAAHHAFNQTQH 62 (677)
Q Consensus 8 ~~~~~~~~~~a~~~----~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 62 (677)
.+.+.|++..|.+. |+...+.+.... ....-.+.......|+.++|.+.+++.++
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34567888887544 444444432221 12222234455667778888777776665
No 449
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=23.12 E-value=7.2e+02 Score=25.93 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=48.7
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHH--------HhhcCChHHHHHHHHhCC
Q 037537 427 LETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL--------LGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 427 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~ 498 (677)
....+.||..+.+-+.+.++..-..+-...+|+-..+. -.|-...+-++|-+ -.+...-+++.++++.||
T Consensus 175 dtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qq--aDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp 252 (669)
T KOG3636|consen 175 DTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQ--ADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMP 252 (669)
T ss_pred hccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCc
Confidence 34558899888777776666666677777777777663 45555555554432 246677899999999997
Q ss_pred C
Q 037537 499 F 499 (677)
Q Consensus 499 ~ 499 (677)
.
T Consensus 253 ~ 253 (669)
T KOG3636|consen 253 A 253 (669)
T ss_pred h
Confidence 5
No 450
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=22.76 E-value=6.5e+02 Score=23.72 Aligned_cols=92 Identities=20% Similarity=0.245 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPP---TNITF--VSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSC 476 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 476 (677)
-.|.||--|..+..+.+|.+.|.. +.|+.| |..++ ..-|......|++++|.+....+... -+.-|.+.+-.
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 355666666666666666665543 334444 22222 23445556778888887777666543 33334322222
Q ss_pred HHH----HHhhcCChHHHHHHHHh
Q 037537 477 MID----LLGRAGKLTDAERLIEA 496 (677)
Q Consensus 477 li~----~~~~~g~~~~A~~~~~~ 496 (677)
|.. -+.|.|..++|+++.+.
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 211 25688889999998875
No 451
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.49 E-value=3.5e+02 Score=23.40 Aligned_cols=40 Identities=8% Similarity=0.037 Sum_probs=17.9
Q ss_pred HccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcC
Q 037537 241 FTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCS 280 (677)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 280 (677)
+...++.-.|..+|..+.+.+...+..+.-.-++.+...|
T Consensus 30 L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 30 LLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3333333445555555555444444443334444444444
No 452
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=22.43 E-value=2.5e+02 Score=30.94 Aligned_cols=245 Identities=10% Similarity=0.032 Sum_probs=0.0
Q ss_pred hHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcch---------hhHHHHH
Q 037537 82 ASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNL---------CLIKQLH 152 (677)
Q Consensus 82 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~---------~~~~~i~ 152 (677)
+-|....+..+......+..++.+.. .|+...+++....+... .+-.....-++..++... ...+..+
T Consensus 284 ~~a~~~~~~~~~~~~~~~e~~~~~i~-~~d~~~vL~~~~~~~~~--~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ 360 (566)
T PF07575_consen 284 EYAQSCLEEFPPDSTNPLEQILLAIF-EGDIESVLKEISSLFDD--WWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYL 360 (566)
T ss_dssp HHHHHHHHHS---TTSTTHHHHHHHH-TS--GGGHHHHHHH--H--HHHHHHHHHHHHHTTSS--SS-----TS-HHHHH
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHH-ccCHHHHHHHHHHHccc--hhHHHHHHHHHHhcCccccccccccccccHHHHH
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCC--hhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 037537 153 CLAIYCGFDHYASVNNSLLTCYSRNGF--LDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD 230 (677)
Q Consensus 153 ~~~~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 230 (677)
-.--...+..+...|..-+..+..|++ ......++.+. +-++...-.-++..|.+.|-.+.|.++.+.+-..-.+
T Consensus 361 ll~YA~~L~s~~~lW~vai~yL~~c~~~g~~~i~~lL~~~-p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~-- 437 (566)
T PF07575_consen 361 LLEYASSLMSHHSLWQVAIGYLSSCPDEGRERIEELLPRV-PLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK-- 437 (566)
T ss_dssp HHHHHHHHHT-TTTHHHHHHHHHS-SSS-HHHHHHHGGG-----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHCChhhHHHHHHHHhhC-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--
Q ss_pred HhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcc
Q 037537 231 MYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQ 310 (677)
Q Consensus 231 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 310 (677)
..-|...+.-+.+.++......+-..+.+.....+......+++......- +......+-...+ ..-..+
T Consensus 438 ~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~-~~~~L~fla~yre---------F~~~~~ 507 (566)
T PF07575_consen 438 EGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPML-LSQRLSFLAKYRE---------FYELYD 507 (566)
T ss_dssp HHHHHHHHHHHH--------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhh-hhhhhHHHHHHHH---------HHHHHh
Q ss_pred cCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 037537 311 KEEYSDQALGCFKKLNRVGYHPDDCSFVCVISA 343 (677)
Q Consensus 311 ~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 343 (677)
. ++..+|.+.+-.+......|..+-...+..+
T Consensus 508 ~-~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 508 E-GDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------
T ss_pred h-hhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
No 453
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.13 E-value=2.8e+02 Score=24.77 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=37.7
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChH
Q 037537 426 MLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLT 488 (677)
Q Consensus 426 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 488 (677)
+.+.|++++..-. .++......+..-.|.++++.+.+. +..++..|----++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 4556776664433 3344444445556788888888876 65556555444557788888765
No 454
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.97 E-value=1.8e+02 Score=23.57 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=8.6
Q ss_pred HHHHHhCCCchHHHHHHHHH
Q 037537 203 VVAYGQHREGLEALQLFQEM 222 (677)
Q Consensus 203 i~~~~~~g~~~~A~~~~~~m 222 (677)
+..|...|+.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444444444444444443
No 455
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.48 E-value=4.6e+02 Score=24.01 Aligned_cols=53 Identities=11% Similarity=0.076 Sum_probs=32.9
Q ss_pred HHHhcCChhHHHHHHhhc-----CCCCCeeeHHHHHH-HHHhCCC--chHHHHHHHHHHHC
Q 037537 173 CYSRNGFLDEAKRVFYEM-----GEIKDEVSWNSMVV-AYGQHRE--GLEALQLFQEMVSL 225 (677)
Q Consensus 173 ~~~~~g~~~~A~~~f~~m-----~~~~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~ 225 (677)
.....|++++|.+-++++ ..+.-...|..+.. +++.++. +-+|.-++.-....
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 345567888888888777 12223445666665 6776654 45666666665544
No 456
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.25 E-value=9.4e+02 Score=24.99 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCC------CCcchHHHHHHHHHhCCChhHHHHHHHHhHh
Q 037537 66 FSFNVLLAAYARQLRIASARQLFDQIPQ------PDLVSYNTLISAYADCGDTESALSLFKDMRE 124 (677)
Q Consensus 66 ~~~~~li~~~~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (677)
....-+.+.|..||+++.|.+.+.+... .-...|-.+|..-.-.|+|......-.+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3566777888889999999998888543 1233466666666677778777777666654
No 457
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=21.23 E-value=46 Score=34.35 Aligned_cols=145 Identities=17% Similarity=0.046 Sum_probs=73.7
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHH--HHHHHHhcCChhHHHHHhccCCC--CC----------c
Q 037537 31 PFSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNV--LLAAYARQLRIASARQLFDQIPQ--PD----------L 96 (677)
Q Consensus 31 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~f~~m~~--~~----------~ 96 (677)
.||.+.|.+-..+--+......|+..+..++ ||...-.. -=..-...|.-..-+++|+.+.- |+ .
T Consensus 412 ~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-Pd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~p 490 (650)
T KOG4334|consen 412 LPDLFPYGSGVGASKKTAKLVAARDTLEILI-PDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIP 490 (650)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHhc-chhhhcccccccccccccccchhHHHHhhcccccCchHHHHhhhcCCC
Confidence 3444444433333333444556666665554 33322111 00001112344556788888763 32 2
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHH---HHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHH
Q 037537 97 VSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLS---GLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTC 173 (677)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~ 173 (677)
..|+.|..++.++-.+.+ +.+=.+|...|-+-+.++.. .-..+.++....++|+-.+.+-.-+.|...+|.+|+++
T Consensus 491 sPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~twGSlLri 569 (650)
T KOG4334|consen 491 SPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLHPHLLTWGSLLRI 569 (650)
T ss_pred CHHHHHHHHHHhhcCCcc-eeeeeeccCCCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhCHHhhhHHHHHHH
Confidence 347888888777765542 22223444444333333321 00111222222777777777777778888888888888
Q ss_pred HHhc
Q 037537 174 YSRN 177 (677)
Q Consensus 174 ~~~~ 177 (677)
|++.
T Consensus 570 YGr~ 573 (650)
T KOG4334|consen 570 YGRL 573 (650)
T ss_pred hhhh
Confidence 8775
No 458
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=21.09 E-value=6.6e+02 Score=23.46 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=36.1
Q ss_pred HHHHHhccCC-------HHHHHHHHHHhHHhcCC--cc-C-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 037537 441 VLSACAHTGK-------VAEGQKYFSMMKDMFGF--EP-E-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNP 501 (677)
Q Consensus 441 ll~a~~~~g~-------~~~a~~~~~~m~~~~~~--~p-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 501 (677)
+.-.|...|+ +..|...|....+.-.. .+ + ....-.+.++..|.|+.++|.+.|.++...+
T Consensus 124 lAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 124 LAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3334555555 34556666665544122 11 1 2233345677789999999999999875443
No 459
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=20.70 E-value=8.3e+02 Score=24.17 Aligned_cols=128 Identities=13% Similarity=0.019 Sum_probs=63.5
Q ss_pred hhHHHHHHhhc--CCC-----CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHH
Q 037537 180 LDEAKRVFYEM--GEI-----KDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQ 252 (677)
Q Consensus 180 ~~~A~~~f~~m--~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 252 (677)
.++|.+.|+.. +.. .+......++...++.|..++-..+++..... ++...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 45667777666 211 12333445556666667655544444444432 356666778888888888888888
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhC----C---CCChhhHHHHHhhhcc
Q 037537 253 FHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEI----P---QPDLVLWNTMISGYSQ 310 (677)
Q Consensus 253 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~----~---~~~~~~~~~li~~~~~ 310 (677)
+++.+...+..++..+...+...+.......+.+.+.|..- . ..+......++..+..
T Consensus 223 ~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~ 287 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAG 287 (324)
T ss_dssp HHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCT
T ss_pred HHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhc
Confidence 88888775422233333333333212111135555555432 1 2222255666665554
No 460
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.65 E-value=3.2e+02 Score=24.35 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=14.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhH
Q 037537 202 MVVAYGQHREGLEALQLFQEMVSLQLGLDMYT 233 (677)
Q Consensus 202 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 233 (677)
++..+...++.-.|.++++.+.+.+..++..|
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aT 62 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPT 62 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcch
Confidence 33333333444445555555554444444333
No 461
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=20.63 E-value=2.2e+02 Score=20.71 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=16.1
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETN 430 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 430 (677)
...++.++..++...-.++++..+.++.+.|
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344555555555555555555555555554
No 462
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.58 E-value=1.3e+03 Score=26.24 Aligned_cols=43 Identities=28% Similarity=0.472 Sum_probs=24.7
Q ss_pred HHHHHhhcCChHHHHHHHHhCCC-------CCChHHHHHHHHHhccCCCC
Q 037537 477 MIDLLGRAGKLTDAERLIEAMPF-------NPGSIALKAANHFLQLEPSN 519 (677)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~l~~l~p~~ 519 (677)
|-.+++|.|.++.-.++++-... +.-.-+..+++.++++.|+.
T Consensus 350 Ln~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 350 LNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 33456777777777776653311 11111266777777877764
No 463
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=20.39 E-value=9.7e+02 Score=25.95 Aligned_cols=100 Identities=12% Similarity=0.043 Sum_probs=55.2
Q ss_pred HHHHHHHHH-HHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCC-CchhhHHHHHHHHHHcCCCHHHHHHHHh
Q 037537 214 EALQLFQEM-VSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFH-QNSHIGSGLIDLYAKCSGDMRDCMKVFE 291 (677)
Q Consensus 214 ~A~~~~~~m-~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~~A~~~f~ 291 (677)
+....++.. .+.|+..+......+... ..|++..+...++++...+-. ....+ .+.+.+++.
T Consensus 191 el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It--------------~~~V~~llg 254 (507)
T PRK06645 191 EIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIIS--------------PQVINQMLG 254 (507)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcC--------------HHHHHHHHC
Confidence 344444433 345676666666555553 347888888888777543211 01111 222222222
Q ss_pred hCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCc
Q 037537 292 EIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDD 334 (677)
Q Consensus 292 ~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~ 334 (677)
. .+....-.++.+.. . ++.++|+.+++++...|..|..
T Consensus 255 ~---~~~~~if~L~~ai~-~-~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 255 L---VDSSVIIEFVEYII-H-RETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred C---CCHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHcCCCHHH
Confidence 2 22223333444444 3 7889999999999999887653
No 464
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.32 E-value=1.4e+02 Score=22.60 Aligned_cols=36 Identities=28% Similarity=0.528 Sum_probs=29.0
Q ss_pred CCCCCcchHH-HHHHHHHhCCChhHHHHHHHHhHhcC
Q 037537 91 IPQPDLVSYN-TLISAYADCGDTESALSLFKDMREKR 126 (677)
Q Consensus 91 m~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g 126 (677)
|++.+..-|| +++..+.+..--++|+++++-|.+.|
T Consensus 25 ~~~~~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 25 EPKIDFSGYNPTVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred cccCCcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4555666777 67888888888999999999998887
No 465
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=20.07 E-value=7.4e+02 Score=23.34 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh-cCCccChHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM-FGFEPEGEHYSCMID 479 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~ 479 (677)
|.+.-++.+.+.+...+|+.+.++-++.. +.|..+-..++..++-.|++++|..-++-..+. ....+....|..+|+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34455677778888888888888877753 445566667778888889998888777665432 012233556666665
Done!