Query 037537
Match_columns 677
No_of_seqs 756 out of 4037
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 22:58:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.9E-39 6.5E-44 359.2 37.5 469 2-532 87-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.6E-37 9E-42 342.0 35.6 461 75-549 63-579 (597)
3 4g26_A Pentatricopeptide repea 100.0 1E-27 3.5E-32 254.6 19.5 211 214-484 8-223 (501)
4 4g26_A Pentatricopeptide repea 99.9 4.2E-27 1.4E-31 250.0 19.5 182 97-278 27-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 5.7E-24 1.9E-28 221.5 35.1 368 74-535 8-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 9.6E-24 3.3E-28 219.8 35.2 355 102-549 5-368 (388)
7 2gw1_A Mitochondrial precursor 99.9 9.7E-21 3.3E-25 204.7 30.2 428 35-550 7-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.4E-19 4.8E-24 192.2 31.0 295 195-549 25-358 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.5E-19 5E-24 195.4 30.9 417 4-464 11-478 (514)
10 3fp2_A TPR repeat-containing p 99.9 3.2E-19 1.1E-23 194.0 33.2 426 35-550 26-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 6E-20 2.1E-24 195.0 25.1 309 161-529 23-372 (450)
12 3ieg_A DNAJ homolog subfamily 99.8 3.2E-16 1.1E-20 160.3 32.0 290 200-549 7-335 (359)
13 3fp2_A TPR repeat-containing p 99.8 1.8E-16 6.2E-21 172.2 30.8 413 2-464 28-491 (537)
14 3ieg_A DNAJ homolog subfamily 99.7 7.1E-16 2.4E-20 157.8 28.0 310 164-532 3-352 (359)
15 1b89_A Protein (clathrin heavy 99.7 1.4E-16 4.8E-21 161.2 21.1 289 46-395 15-308 (449)
16 3hym_B Cell division cycle pro 99.7 2.6E-15 9E-20 151.7 28.8 287 194-537 20-322 (330)
17 1b89_A Protein (clathrin heavy 99.7 4.2E-16 1.4E-20 157.7 21.1 332 175-546 14-369 (449)
18 3spa_A Mtrpol, DNA-directed RN 99.7 5E-18 1.7E-22 184.7 7.0 152 369-534 127-286 (1134)
19 3hym_B Cell division cycle pro 99.7 2.8E-15 9.5E-20 151.5 26.3 267 227-548 18-298 (330)
20 1xi4_A Clathrin heavy chain; a 99.7 6.5E-13 2.2E-17 149.5 46.8 478 3-541 843-1376(1630)
21 3mkr_A Coatomer subunit epsilo 99.7 4.4E-15 1.5E-19 147.0 25.7 226 268-550 36-265 (291)
22 1fch_A Peroxisomal targeting s 99.7 6.5E-16 2.2E-20 159.0 19.8 280 234-545 67-355 (368)
23 1xi4_A Clathrin heavy chain; a 99.7 6.7E-13 2.3E-17 149.3 44.7 381 33-495 984-1379(1630)
24 2ooe_A Cleavage stimulation fa 99.7 6.7E-14 2.3E-18 151.6 36.0 403 22-497 2-489 (530)
25 2ooe_A Cleavage stimulation fa 99.7 9.6E-14 3.3E-18 150.4 36.0 396 95-549 12-492 (530)
26 3spa_A Mtrpol, DNA-directed RN 99.7 5.8E-17 2E-21 176.5 8.0 148 163-311 126-285 (1134)
27 2xm6_A Protein corresponding t 99.7 1.2E-13 4.3E-18 147.9 32.8 346 63-497 37-429 (490)
28 1fch_A Peroxisomal targeting s 99.7 9.9E-15 3.4E-19 150.1 23.0 282 174-497 35-356 (368)
29 2xm6_A Protein corresponding t 99.6 9.8E-13 3.3E-17 140.9 36.6 352 94-551 37-434 (490)
30 4g1t_A Interferon-induced prot 99.6 2.3E-14 8E-19 152.8 23.5 356 164-560 51-470 (472)
31 4eqf_A PEX5-related protein; a 99.6 9.5E-15 3.2E-19 150.2 19.5 268 195-545 64-352 (365)
32 4eqf_A PEX5-related protein; a 99.6 3.2E-14 1.1E-18 146.3 21.5 271 163-497 64-353 (365)
33 3cv0_A Peroxisome targeting si 99.6 1.3E-13 4.4E-18 139.0 23.9 258 196-497 21-312 (327)
34 3cv0_A Peroxisome targeting si 99.6 5.7E-14 1.9E-18 141.6 20.0 272 230-546 20-312 (327)
35 3mkr_A Coatomer subunit epsilo 99.6 4.8E-13 1.7E-17 132.3 25.2 274 172-494 7-288 (291)
36 4g1t_A Interferon-induced prot 99.5 1.4E-12 4.8E-17 139.0 24.5 267 178-497 152-456 (472)
37 2pl2_A Hypothetical conserved 99.5 7E-13 2.4E-17 125.1 16.3 193 297-546 4-211 (217)
38 3u4t_A TPR repeat-containing p 99.5 7.9E-12 2.7E-16 122.2 22.3 213 268-534 39-269 (272)
39 3uq3_A Heat shock protein STI1 99.4 1.4E-11 4.7E-16 119.2 20.2 228 266-549 5-236 (258)
40 3e4b_A ALGK; tetratricopeptide 99.4 4.5E-11 1.5E-15 126.1 22.7 368 40-496 9-417 (452)
41 2ho1_A Type 4 fimbrial biogene 99.4 4.2E-11 1.4E-15 115.6 20.2 199 298-550 37-239 (252)
42 3e4b_A ALGK; tetratricopeptide 99.4 1.2E-10 4.1E-15 122.9 25.0 344 102-551 9-389 (452)
43 3uq3_A Heat shock protein STI1 99.3 3.1E-11 1.1E-15 116.7 18.3 219 198-464 7-236 (258)
44 1xnf_A Lipoprotein NLPI; TPR, 99.3 2.7E-11 9.3E-16 118.5 18.0 215 268-543 45-269 (275)
45 2q7f_A YRRB protein; TPR, prot 99.3 1.8E-11 6.3E-16 117.2 16.1 200 296-550 21-223 (243)
46 2vq2_A PILW, putative fimbrial 99.3 9.5E-11 3.3E-15 110.6 19.8 198 298-549 8-211 (225)
47 2pl2_A Hypothetical conserved 99.3 3.5E-11 1.2E-15 113.4 15.8 192 263-497 2-211 (217)
48 3vtx_A MAMA; tetratricopeptide 99.3 8.5E-11 2.9E-15 107.4 17.3 163 369-549 5-170 (184)
49 2q7f_A YRRB protein; TPR, prot 99.3 2.5E-11 8.7E-16 116.3 13.0 211 266-532 23-239 (243)
50 3sf4_A G-protein-signaling mod 99.3 3E-11 1E-15 125.5 14.5 229 268-537 89-364 (406)
51 2ho1_A Type 4 fimbrial biogene 99.3 3.9E-10 1.3E-14 108.7 21.3 199 196-464 37-238 (252)
52 3u4t_A TPR repeat-containing p 99.3 5.1E-10 1.8E-14 109.2 21.8 160 166-328 5-171 (272)
53 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.8E-11 6.2E-16 119.8 11.3 111 13-123 19-138 (275)
54 1ouv_A Conserved hypothetical 99.2 1.1E-09 3.7E-14 107.1 23.0 220 267-550 7-252 (273)
55 2vq2_A PILW, putative fimbrial 99.2 7.8E-10 2.7E-14 104.2 21.1 206 95-339 7-220 (225)
56 4a1s_A PINS, partner of inscut 99.2 1E-10 3.5E-15 122.0 16.1 279 199-549 51-372 (411)
57 4abn_A Tetratricopeptide repea 99.2 7.5E-11 2.6E-15 125.2 15.2 207 283-545 84-317 (474)
58 2h6f_A Protein farnesyltransfe 99.2 2.3E-10 7.9E-15 117.0 17.6 244 198-532 99-365 (382)
59 3ro2_A PINS homolog, G-protein 99.2 7.7E-11 2.6E-15 118.7 13.8 281 199-549 8-332 (338)
60 4e6h_A MRNA 3'-END-processing 99.2 6.2E-08 2.1E-12 105.8 37.0 428 15-482 48-585 (679)
61 3sf4_A G-protein-signaling mod 99.2 9.5E-11 3.2E-15 121.7 14.4 279 198-548 11-335 (406)
62 4a1s_A PINS, partner of inscut 99.2 1.5E-10 5E-15 120.8 15.8 274 166-497 50-369 (411)
63 3ulq_A Response regulator aspa 99.2 6.2E-10 2.1E-14 114.9 20.1 230 272-548 109-367 (383)
64 3ro2_A PINS homolog, G-protein 99.2 2.2E-10 7.5E-15 115.3 16.3 272 166-497 7-329 (338)
65 3as5_A MAMA; tetratricopeptide 99.2 1E-09 3.5E-14 99.8 19.3 163 369-549 8-173 (186)
66 1ouv_A Conserved hypothetical 99.2 1.6E-09 5.4E-14 106.0 20.8 223 165-464 7-251 (273)
67 2h6f_A Protein farnesyltransfe 99.2 1E-09 3.5E-14 112.2 19.8 236 35-308 98-363 (382)
68 4gyw_A UDP-N-acetylglucosamine 99.2 2.2E-10 7.4E-15 126.7 15.7 163 366-548 6-173 (723)
69 4e6h_A MRNA 3'-END-processing 99.2 3.4E-08 1.2E-12 107.9 32.1 427 63-550 64-571 (679)
70 2ond_A Cleavage stimulation fa 99.1 4.7E-09 1.6E-13 104.6 22.2 167 369-550 99-271 (308)
71 3q15_A PSP28, response regulat 99.1 4.1E-09 1.4E-13 108.5 18.6 225 274-548 109-364 (378)
72 2ond_A Cleavage stimulation fa 99.1 1.5E-08 5.2E-13 100.9 21.7 178 82-294 81-268 (308)
73 3vtx_A MAMA; tetratricopeptide 99.0 2.4E-09 8.1E-14 97.6 14.3 160 297-497 4-167 (184)
74 3nf1_A KLC 1, kinesin light ch 99.0 2.8E-10 9.5E-15 113.4 8.7 236 265-548 26-306 (311)
75 3ulq_A Response regulator aspa 99.0 5.5E-09 1.9E-13 107.7 16.1 287 174-497 22-365 (383)
76 3nf1_A KLC 1, kinesin light ch 99.0 5E-10 1.7E-14 111.5 7.5 96 268-396 113-222 (311)
77 4i17_A Hypothetical protein; T 99.0 7.2E-09 2.5E-13 98.1 14.4 161 369-549 7-209 (228)
78 4abn_A Tetratricopeptide repea 99.0 7.5E-09 2.6E-13 109.8 15.7 161 369-549 102-287 (474)
79 2fo7_A Synthetic consensus TPR 98.9 2.8E-08 9.5E-13 84.6 15.7 130 402-549 3-132 (136)
80 1hz4_A MALT regulatory protein 98.9 1.7E-07 5.9E-12 96.0 23.2 127 371-497 176-319 (373)
81 3q15_A PSP28, response regulat 98.9 1.5E-07 5.2E-12 96.6 22.6 234 102-428 107-364 (378)
82 3as5_A MAMA; tetratricopeptide 98.9 1.1E-07 3.8E-12 86.0 17.8 159 67-260 10-173 (186)
83 1hz4_A MALT regulatory protein 98.9 4.4E-07 1.5E-11 92.9 24.3 223 8-259 23-281 (373)
84 4i17_A Hypothetical protein; T 98.9 4.8E-08 1.7E-12 92.3 15.8 203 264-530 5-224 (228)
85 4ga2_A E3 SUMO-protein ligase 98.8 1.8E-08 6.1E-13 88.3 9.6 142 375-535 3-149 (150)
86 4gyw_A UDP-N-acetylglucosamine 98.8 5.2E-08 1.8E-12 107.7 15.1 158 298-497 9-171 (723)
87 3edt_B KLC 2, kinesin light ch 98.8 3.8E-08 1.3E-12 96.1 11.9 180 369-548 43-280 (283)
88 3qky_A Outer membrane assembly 98.7 3.1E-07 1.1E-11 88.8 17.3 186 369-595 15-247 (261)
89 2fo7_A Synthetic consensus TPR 98.7 1.4E-07 4.7E-12 80.2 13.1 124 371-497 3-129 (136)
90 1qqe_A Vesicular transport pro 98.7 4E-07 1.4E-11 89.7 17.9 166 299-498 78-267 (292)
91 1qqe_A Vesicular transport pro 98.7 1.4E-07 4.7E-12 93.1 13.9 206 283-546 33-266 (292)
92 2r5s_A Uncharacterized protein 98.7 3.3E-07 1.1E-11 82.6 14.2 160 369-548 6-172 (176)
93 2pzi_A Probable serine/threoni 98.7 1.6E-07 5.5E-12 104.2 14.3 147 369-535 433-583 (681)
94 3mv2_B Coatomer subunit epsilo 98.6 2.4E-06 8.1E-11 82.9 19.6 173 286-497 85-279 (310)
95 2vsy_A XCC0866; transferase, g 98.6 3.8E-07 1.3E-11 99.2 15.7 158 349-527 5-169 (568)
96 2yhc_A BAMD, UPF0169 lipoprote 98.6 7E-07 2.4E-11 84.1 15.4 161 370-550 5-214 (225)
97 3qky_A Outer membrane assembly 98.6 3.6E-07 1.2E-11 88.4 13.1 165 297-497 14-221 (261)
98 3qou_A Protein YBBN; thioredox 98.6 3.5E-07 1.2E-11 89.8 12.3 159 369-547 117-282 (287)
99 3edt_B KLC 2, kinesin light ch 98.6 4.7E-07 1.6E-11 88.1 12.8 211 283-497 24-278 (283)
100 3mv2_B Coatomer subunit epsilo 98.5 6E-07 2.1E-11 87.1 12.9 165 373-550 104-283 (310)
101 3qou_A Protein YBBN; thioredox 98.5 3.1E-06 1.1E-10 82.9 17.5 172 285-497 104-281 (287)
102 2pzi_A Probable serine/threoni 98.5 3.7E-07 1.3E-11 101.3 11.8 149 380-548 402-562 (681)
103 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.4E-06 4.9E-11 81.0 14.1 141 404-550 10-151 (213)
104 2r5s_A Uncharacterized protein 98.5 3.7E-06 1.3E-10 75.6 15.6 153 36-223 8-171 (176)
105 4gco_A Protein STI-1; structur 98.5 2E-06 7E-11 72.4 12.8 109 402-529 15-124 (126)
106 1a17_A Serine/threonine protei 98.5 2.7E-06 9.3E-11 75.3 14.4 130 401-548 14-145 (166)
107 1hh8_A P67PHOX, NCF-2, neutrop 98.5 7.2E-06 2.4E-10 76.1 17.9 126 371-497 8-147 (213)
108 2uy1_A Cleavage stimulation fa 98.5 3.4E-05 1.2E-09 81.6 25.1 125 401-548 287-412 (493)
109 1na0_A Designed protein CTPR3; 98.5 3.2E-06 1.1E-10 70.4 13.7 117 400-534 9-125 (125)
110 2uy1_A Cleavage stimulation fa 98.5 4.2E-05 1.4E-09 80.9 25.5 363 12-427 7-411 (493)
111 4ga2_A E3 SUMO-protein ligase 98.4 1.8E-07 6.1E-12 81.9 5.7 122 407-548 4-128 (150)
112 3gyz_A Chaperone protein IPGC; 98.4 1.7E-06 5.9E-11 75.3 11.6 101 432-550 32-134 (151)
113 2ifu_A Gamma-SNAP; membrane fu 98.4 1.1E-06 3.6E-11 87.4 11.4 128 369-497 76-221 (307)
114 3rjv_A Putative SEL1 repeat pr 98.4 6.4E-06 2.2E-10 76.6 16.0 160 369-551 18-199 (212)
115 2lni_A Stress-induced-phosphop 98.4 3.8E-06 1.3E-10 71.0 13.0 119 399-535 15-133 (133)
116 2vsy_A XCC0866; transferase, g 98.4 2.2E-06 7.7E-11 93.1 14.4 147 313-464 3-157 (568)
117 2vyi_A SGTA protein; chaperone 98.4 3.7E-06 1.3E-10 70.7 12.6 120 399-536 11-130 (131)
118 2vgx_A Chaperone SYCD; alterna 98.4 1.6E-06 5.4E-11 75.5 9.7 97 435-549 21-118 (148)
119 2fbn_A 70 kDa peptidylprolyl i 98.4 6.8E-07 2.3E-11 82.3 7.7 161 372-550 7-187 (198)
120 3u3w_A Transcriptional activat 98.3 1.3E-05 4.4E-10 78.8 17.2 166 374-548 80-265 (293)
121 2ifu_A Gamma-SNAP; membrane fu 98.3 3E-06 1E-10 84.1 12.5 159 373-547 40-222 (307)
122 1p5q_A FKBP52, FK506-binding p 98.3 4.4E-06 1.5E-10 84.0 13.1 144 384-547 128-292 (336)
123 4gco_A Protein STI-1; structur 98.3 4.7E-06 1.6E-10 70.1 11.2 101 431-549 8-110 (126)
124 3urz_A Uncharacterized protein 98.3 3.1E-06 1.1E-10 78.5 10.9 154 42-232 12-191 (208)
125 3urz_A Uncharacterized protein 98.3 6.1E-06 2.1E-10 76.5 12.7 167 306-497 12-183 (208)
126 3gw4_A Uncharacterized protein 98.3 5.3E-06 1.8E-10 76.3 12.2 158 380-548 3-175 (203)
127 2yhc_A BAMD, UPF0169 lipoprote 98.3 1.2E-05 4E-10 75.6 14.7 84 412-497 108-210 (225)
128 2e2e_A Formate-dependent nitri 98.3 4.4E-06 1.5E-10 75.1 10.6 121 411-550 21-145 (177)
129 3dra_A Protein farnesyltransfe 98.3 0.00013 4.3E-09 71.4 21.5 210 283-548 49-286 (306)
130 2qfc_A PLCR protein; TPR, HTH, 98.2 3.6E-05 1.2E-09 75.6 17.7 170 370-548 76-265 (293)
131 2c2l_A CHIP, carboxy terminus 98.2 2.7E-06 9.2E-11 83.1 8.4 191 298-549 4-199 (281)
132 2xcb_A PCRH, regulatory protei 98.2 2.1E-05 7.3E-10 67.6 13.1 96 436-549 19-115 (142)
133 3gyz_A Chaperone protein IPGC; 98.2 1.1E-05 3.7E-10 70.2 10.9 119 371-497 11-130 (151)
134 1elw_A TPR1-domain of HOP; HOP 98.2 3.2E-05 1.1E-09 63.4 13.2 112 400-529 4-115 (118)
135 2vgx_A Chaperone SYCD; alterna 98.2 7.5E-06 2.6E-10 71.2 9.5 95 399-497 20-115 (148)
136 3rjv_A Putative SEL1 repeat pr 98.2 0.00011 3.7E-09 68.1 18.1 160 265-467 17-199 (212)
137 1a17_A Serine/threonine protei 98.1 1.5E-05 5.1E-10 70.3 11.5 125 369-497 13-143 (166)
138 2qfc_A PLCR protein; TPR, HTH, 98.1 3.7E-05 1.3E-09 75.5 14.7 167 300-497 77-263 (293)
139 4f3v_A ESX-1 secretion system 98.1 1.5E-05 5.3E-10 76.1 11.4 125 371-497 104-234 (282)
140 3upv_A Heat shock protein STI1 98.1 2.3E-05 7.7E-10 65.7 11.1 96 436-549 5-101 (126)
141 3u3w_A Transcriptional activat 98.1 9.1E-05 3.1E-09 72.7 16.6 163 304-497 81-263 (293)
142 2kck_A TPR repeat; tetratricop 98.1 3.3E-05 1.1E-09 62.7 11.1 99 435-550 6-107 (112)
143 2dba_A Smooth muscle cell asso 98.1 6.2E-05 2.1E-09 64.8 13.4 113 399-531 27-144 (148)
144 1na0_A Designed protein CTPR3; 98.1 4.1E-05 1.4E-09 63.5 11.9 112 369-484 9-124 (125)
145 1wao_1 Serine/threonine protei 98.1 1.3E-05 4.3E-10 84.7 10.5 120 407-545 13-135 (477)
146 3q49_B STIP1 homology and U bo 98.1 4.7E-05 1.6E-09 64.7 12.4 100 433-549 7-106 (137)
147 2xcb_A PCRH, regulatory protei 98.0 2.8E-05 9.6E-10 66.8 10.8 94 400-497 18-112 (142)
148 3dra_A Protein farnesyltransfe 98.0 0.00049 1.7E-08 67.3 20.8 211 13-258 47-285 (306)
149 3upv_A Heat shock protein STI1 98.0 6.1E-05 2.1E-09 63.0 12.3 92 402-497 6-98 (126)
150 4f3v_A ESX-1 secretion system 98.0 4.5E-05 1.5E-09 72.9 12.2 133 304-477 108-247 (282)
151 3sz7_A HSC70 cochaperone (SGT) 98.0 6E-05 2E-09 66.6 12.4 110 399-527 10-120 (164)
152 2e2e_A Formate-dependent nitri 98.0 2E-05 6.7E-10 70.7 9.3 114 380-497 21-141 (177)
153 3sz7_A HSC70 cochaperone (SGT) 98.0 4E-05 1.4E-09 67.7 11.1 98 434-549 10-108 (164)
154 1hxi_A PEX5, peroxisome target 98.0 3.4E-05 1.2E-09 64.2 9.5 92 439-548 21-113 (121)
155 1elw_A TPR1-domain of HOP; HOP 98.0 8E-05 2.7E-09 60.9 11.6 98 435-549 4-101 (118)
156 1wao_1 Serine/threonine protei 98.0 5.2E-05 1.8E-09 80.0 12.9 120 372-495 9-134 (477)
157 2kck_A TPR repeat; tetratricop 97.9 9.9E-05 3.4E-09 59.7 11.9 95 399-497 5-103 (112)
158 2lni_A Stress-induced-phosphop 97.9 7.5E-05 2.6E-09 62.8 11.1 114 369-486 16-133 (133)
159 2vyi_A SGTA protein; chaperone 97.9 8.9E-05 3.1E-09 61.9 11.2 115 369-487 12-130 (131)
160 3q49_B STIP1 homology and U bo 97.9 8.7E-05 3E-09 63.0 11.1 96 398-497 7-103 (137)
161 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 6.5E-05 2.2E-09 78.8 12.3 129 400-548 268-414 (457)
162 1elr_A TPR2A-domain of HOP; HO 97.9 8.2E-05 2.8E-09 62.2 10.8 96 401-497 5-105 (131)
163 2dba_A Smooth muscle cell asso 97.9 0.00013 4.3E-09 62.7 12.3 98 434-549 27-128 (148)
164 3gw4_A Uncharacterized protein 97.9 0.00011 3.7E-09 67.2 11.8 152 280-463 6-175 (203)
165 1p5q_A FKBP52, FK506-binding p 97.8 7.6E-05 2.6E-09 74.8 11.4 125 369-497 147-291 (336)
166 3q7a_A Farnesyltransferase alp 97.8 0.0024 8.2E-08 63.1 21.4 216 283-548 70-330 (349)
167 3ro3_A PINS homolog, G-protein 97.8 7.9E-05 2.7E-09 65.0 9.4 138 402-548 11-157 (164)
168 2xev_A YBGF; tetratricopeptide 97.8 0.00039 1.3E-08 58.1 13.4 90 403-497 5-102 (129)
169 4gcn_A Protein STI-1; structur 97.8 9E-05 3.1E-09 62.2 8.9 93 371-463 10-111 (127)
170 1hxi_A PEX5, peroxisome target 97.8 0.00017 5.8E-09 59.9 10.5 93 401-497 18-111 (121)
171 3rkv_A Putative peptidylprolyl 97.7 0.00028 9.4E-09 62.0 12.1 64 471-549 63-126 (162)
172 2if4_A ATFKBP42; FKBP-like, al 97.7 9.1E-05 3.1E-09 74.3 9.7 127 403-549 182-328 (338)
173 2xev_A YBGF; tetratricopeptide 97.7 0.00024 8.3E-09 59.4 10.9 93 439-549 6-105 (129)
174 3k9i_A BH0479 protein; putativ 97.7 3.2E-05 1.1E-09 63.9 5.1 85 448-548 3-89 (117)
175 2c2l_A CHIP, carboxy terminus 97.7 0.00029 9.8E-09 68.6 12.7 94 400-497 4-98 (281)
176 1ihg_A Cyclophilin 40; ppiase 97.7 0.00016 5.5E-09 73.4 10.8 122 402-541 225-362 (370)
177 4gcn_A Protein STI-1; structur 97.7 0.00032 1.1E-08 58.8 10.9 93 401-497 9-109 (127)
178 3q7a_A Farnesyltransferase alp 97.7 0.0071 2.4E-07 59.8 21.8 222 69-327 58-330 (349)
179 2hr2_A Hypothetical protein; a 97.7 0.00031 1.1E-08 60.5 10.5 69 472-548 58-130 (159)
180 1elr_A TPR2A-domain of HOP; HO 97.6 0.00013 4.3E-09 61.0 7.9 110 369-481 4-122 (131)
181 4b4t_Q 26S proteasome regulato 97.6 0.001 3.6E-08 69.0 16.5 208 309-548 15-244 (434)
182 3ro3_A PINS homolog, G-protein 97.6 0.00026 8.9E-09 61.6 9.4 129 369-497 9-155 (164)
183 3rkv_A Putative peptidylprolyl 97.6 0.00023 7.8E-09 62.6 8.9 93 402-497 13-123 (162)
184 3k9i_A BH0479 protein; putativ 97.5 8.7E-05 3E-09 61.2 5.4 82 413-497 3-87 (117)
185 2fbn_A 70 kDa peptidylprolyl i 97.5 0.00042 1.4E-08 63.3 10.3 125 369-497 38-183 (198)
186 4b4t_Q 26S proteasome regulato 97.5 0.00034 1.2E-08 72.7 9.9 190 7-224 12-244 (434)
187 3n71_A Histone lysine methyltr 97.4 0.00078 2.7E-08 70.6 12.1 133 409-551 318-466 (490)
188 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.00089 3E-08 70.2 11.7 126 369-498 268-413 (457)
189 3dss_A Geranylgeranyl transfer 97.3 0.013 4.3E-07 57.7 18.8 162 369-549 108-304 (331)
190 2l6j_A TPR repeat-containing p 97.3 0.00024 8.1E-09 57.5 5.1 95 400-498 4-105 (111)
191 1dce_A Protein (RAB geranylger 97.3 0.0019 6.6E-08 69.3 12.9 135 385-538 89-244 (567)
192 3dss_A Geranylgeranyl transfer 97.2 0.028 9.6E-07 55.2 19.9 214 9-260 39-304 (331)
193 3ma5_A Tetratricopeptide repea 97.2 0.00098 3.4E-08 52.9 7.9 65 470-549 6-70 (100)
194 2l6j_A TPR repeat-containing p 97.2 0.0008 2.7E-08 54.3 7.6 95 433-544 2-102 (111)
195 1ihg_A Cyclophilin 40; ppiase 97.2 0.0014 4.7E-08 66.4 10.7 121 369-493 223-363 (370)
196 2kat_A Uncharacterized protein 97.1 0.0019 6.6E-08 52.6 9.1 78 453-548 3-81 (115)
197 1na3_A Designed protein CTPR2; 97.1 0.0023 7.9E-08 49.2 9.1 82 436-534 10-91 (91)
198 2hr2_A Hypothetical protein; a 97.1 0.0015 5.3E-08 56.1 8.2 94 370-463 12-130 (159)
199 1klx_A Cysteine rich protein B 97.0 0.0031 1.1E-07 53.5 9.4 113 413-551 8-128 (138)
200 3n71_A Histone lysine methyltr 97.0 0.0013 4.3E-08 69.0 8.2 123 310-464 321-464 (490)
201 3bee_A Putative YFRE protein; 96.9 0.0031 1.1E-07 49.1 8.0 68 468-550 3-73 (93)
202 3ma5_A Tetratricopeptide repea 96.8 0.004 1.4E-07 49.3 8.0 65 399-464 6-70 (100)
203 2kat_A Uncharacterized protein 96.8 0.0023 7.9E-08 52.1 6.6 65 399-464 18-82 (115)
204 2if4_A ATFKBP42; FKBP-like, al 96.8 0.005 1.7E-07 61.5 10.3 126 199-328 182-328 (338)
205 1dce_A Protein (RAB geranylger 96.8 0.023 7.7E-07 61.0 15.8 149 381-548 41-220 (567)
206 1zu2_A Mitochondrial import re 96.8 0.0013 4.4E-08 56.5 4.9 93 447-550 14-121 (158)
207 1zu2_A Mitochondrial import re 96.8 0.0022 7.6E-08 55.0 6.4 93 411-522 13-127 (158)
208 3mkq_A Coatomer beta'-subunit; 96.6 0.023 7.9E-07 64.2 15.8 154 74-293 608-762 (814)
209 3qwp_A SET and MYND domain-con 96.6 0.0065 2.2E-07 62.6 9.7 127 442-594 294-427 (429)
210 1na3_A Designed protein CTPR2; 96.6 0.024 8.3E-07 43.2 10.7 81 400-484 9-90 (91)
211 3qww_A SET and MYND domain-con 96.4 0.0063 2.2E-07 62.6 8.2 115 447-587 310-431 (433)
212 3ly7_A Transcriptional activat 96.3 0.09 3.1E-06 51.9 15.3 135 398-550 192-340 (372)
213 3mkq_A Coatomer beta'-subunit; 96.3 0.099 3.4E-06 58.9 18.2 103 377-497 660-762 (814)
214 1klx_A Cysteine rich protein B 96.2 0.02 6.9E-07 48.4 8.8 110 12-126 8-127 (138)
215 3lvg_A Clathrin heavy chain 1; 96.0 0.0019 6.6E-08 65.0 1.5 255 34-319 54-324 (624)
216 3qww_A SET and MYND domain-con 95.8 0.014 4.7E-07 60.1 7.1 85 313-428 312-410 (433)
217 2kc7_A BFR218_protein; tetratr 95.7 0.018 6.2E-07 45.0 6.0 59 477-550 6-65 (99)
218 1pc2_A Mitochondria fission pr 95.6 0.093 3.2E-06 44.4 10.2 91 416-524 14-109 (152)
219 3qwp_A SET and MYND domain-con 95.3 0.088 3E-06 54.1 11.2 92 406-497 293-397 (429)
220 1pc2_A Mitochondria fission pr 95.2 0.14 4.7E-06 43.4 9.9 85 448-549 11-100 (152)
221 2kc7_A BFR218_protein; tetratr 95.2 0.075 2.6E-06 41.3 8.1 80 406-497 6-87 (99)
222 3ly7_A Transcriptional activat 94.9 0.35 1.2E-05 47.7 13.3 73 398-475 275-347 (372)
223 1wy6_A Hypothetical protein ST 94.7 1.3 4.4E-05 36.2 13.5 68 470-552 90-157 (172)
224 3mkq_B Coatomer subunit alpha; 94.4 1.4 4.7E-05 38.3 14.5 104 377-498 13-116 (177)
225 3lvg_A Clathrin heavy chain 1; 94.2 0.011 3.7E-07 59.7 0.9 236 163-420 53-324 (624)
226 2v5f_A Prolyl 4-hydroxylase su 94.1 0.26 8.7E-06 38.9 8.7 74 437-525 7-85 (104)
227 3u64_A Protein TP_0956; tetrat 94.0 0.22 7.7E-06 47.0 9.2 88 451-556 179-276 (301)
228 3mkq_B Coatomer subunit alpha; 93.5 1.2 4E-05 38.7 12.3 129 172-325 13-141 (177)
229 1nzn_A CGI-135 protein, fissio 92.5 0.67 2.3E-05 37.6 8.7 92 415-524 16-112 (126)
230 3u64_A Protein TP_0956; tetrat 92.3 1.9 6.5E-05 40.8 12.7 112 381-497 133-266 (301)
231 3bee_A Putative YFRE protein; 92.2 0.94 3.2E-05 34.7 9.0 63 399-463 5-71 (93)
232 1nzn_A CGI-135 protein, fissio 91.0 2.4 8.3E-05 34.4 10.5 90 444-549 10-103 (126)
233 4b4t_P 26S proteasome regulato 90.1 8.9 0.0003 39.2 16.6 255 13-297 30-325 (445)
234 1wy6_A Hypothetical protein ST 90.0 6.1 0.00021 32.3 11.5 84 381-467 73-156 (172)
235 4h7y_A Dual specificity protei 89.7 2.8 9.7E-05 35.0 9.8 98 397-497 10-120 (161)
236 2v5f_A Prolyl 4-hydroxylase su 88.3 2 7E-05 33.5 8.1 62 403-464 8-75 (104)
237 4gns_B Protein CSD3, chitin bi 87.6 2.1 7.1E-05 46.8 10.0 53 479-546 345-397 (754)
238 4h7y_A Dual specificity protei 86.1 4.5 0.00015 33.8 8.9 111 161-272 10-135 (161)
239 2ff4_A Probable regulatory pro 85.5 1.3 4.5E-05 44.6 6.8 68 473-555 173-245 (388)
240 1v54_E Cytochrome C oxidase po 85.0 5 0.00017 30.8 7.9 62 417-480 27-88 (109)
241 3txn_A 26S proteasome regulato 84.5 34 0.0012 34.0 18.1 160 35-222 20-207 (394)
242 3lpz_A GET4 (YOR164C homolog); 84.2 31 0.0011 33.3 20.9 146 42-210 20-181 (336)
243 2ff4_A Probable regulatory pro 83.8 6.1 0.00021 39.6 10.8 70 404-474 175-248 (388)
244 1qsa_A Protein (soluble lytic 82.5 55 0.0019 34.9 25.6 116 414-548 228-347 (618)
245 3ffl_A Anaphase-promoting comp 82.3 6.3 0.00022 33.6 8.4 114 373-500 24-151 (167)
246 1y8m_A FIS1; mitochondria, unk 82.0 18 0.00063 29.8 10.8 75 432-522 36-113 (144)
247 3o48_A Mitochondria fission 1 81.1 13 0.00046 30.2 9.6 65 432-497 37-104 (134)
248 2wpv_A GET4, UPF0363 protein Y 80.9 40 0.0014 32.3 17.4 167 270-464 37-217 (312)
249 4gns_B Protein CSD3, chitin bi 80.9 21 0.0007 39.1 14.1 53 444-499 346-399 (754)
250 4b4t_P 26S proteasome regulato 80.1 25 0.00087 35.8 14.0 94 373-466 141-249 (445)
251 1v54_E Cytochrome C oxidase po 78.7 8.9 0.00031 29.4 7.2 60 213-273 27-86 (109)
252 2y69_E Cytochrome C oxidase su 78.1 11 0.00036 30.8 7.9 60 418-479 71-130 (152)
253 2p58_C Putative type III secre 77.5 17 0.00057 27.8 8.3 60 377-439 48-107 (116)
254 2wpv_A GET4, UPF0363 protein Y 77.4 52 0.0018 31.5 18.8 123 44-188 23-158 (312)
255 3txn_A 26S proteasome regulato 77.0 62 0.0021 32.2 21.1 210 303-552 104-346 (394)
256 2uwj_G Type III export protein 76.6 16 0.00054 27.9 7.9 61 377-440 47-107 (115)
257 3ltm_A Alpha-REP4; protein eng 75.9 42 0.0014 29.6 17.8 79 32-110 31-109 (211)
258 3ltj_A Alpharep-4; protein eng 74.1 45 0.0015 29.1 18.3 50 32-81 26-75 (201)
259 3ltm_A Alpha-REP4; protein eng 72.5 51 0.0017 29.0 17.0 174 59-278 27-200 (211)
260 2uwj_G Type III export protein 72.1 29 0.001 26.5 8.4 84 247-337 22-105 (115)
261 2p58_C Putative type III secre 71.9 31 0.0011 26.4 9.4 84 247-337 23-106 (116)
262 1wdy_A 2-5A-dependent ribonucl 71.4 28 0.00097 32.3 11.1 16 275-291 225-240 (285)
263 3ffl_A Anaphase-promoting comp 70.8 29 0.00098 29.6 9.3 58 5-62 26-91 (167)
264 4fhn_B Nucleoporin NUP120; pro 69.4 44 0.0015 38.9 14.0 196 339-547 817-1048(1139)
265 4g8k_A 2-5A-dependent ribonucl 68.2 86 0.0029 30.0 15.1 53 4-60 27-82 (337)
266 2qx5_A Nucleoporin NIC96; mRNA 67.7 1E+02 0.0036 33.0 15.2 44 165-209 154-199 (661)
267 1wdy_A 2-5A-dependent ribonucl 65.7 41 0.0014 31.1 11.0 239 4-266 7-281 (285)
268 2y69_E Cytochrome C oxidase su 65.4 37 0.0013 27.7 8.3 59 214-273 71-129 (152)
269 4fhn_B Nucleoporin NUP120; pro 58.6 1E+02 0.0034 35.9 14.3 66 473-553 901-971 (1139)
270 3ltj_A Alpharep-4; protein eng 58.3 92 0.0031 27.0 18.1 170 63-278 26-195 (201)
271 1zbp_A Hypothetical protein VP 56.3 64 0.0022 30.0 9.5 116 409-549 6-129 (273)
272 2qx5_A Nucleoporin NIC96; mRNA 54.5 2.3E+02 0.0078 30.4 17.5 43 101-144 157-199 (661)
273 3esl_A Checkpoint serine/threo 53.7 1.2E+02 0.004 26.8 10.4 90 473-601 82-171 (202)
274 3kea_A K1L; tropism, ANK repea 53.2 1.4E+02 0.0048 27.7 12.3 52 41-92 35-86 (285)
275 2l0z_A Glycoprotein G2; zinc-b 52.1 4.5 0.00015 24.7 0.7 17 660-676 12-29 (42)
276 4b4t_R RPN7, 26S proteasome re 50.9 61 0.0021 32.8 9.6 96 369-464 131-237 (429)
277 3lpz_A GET4 (YOR164C homolog); 50.8 1.8E+02 0.0061 28.0 25.8 165 271-463 40-215 (336)
278 3eiq_C Programmed cell death p 50.6 1.6E+02 0.0053 28.8 11.9 65 372-436 220-289 (358)
279 1zbp_A Hypothetical protein VP 47.6 47 0.0016 30.8 7.2 115 7-125 5-129 (273)
280 4b4t_S RPN3, 26S proteasome re 47.4 1.8E+02 0.0062 30.0 12.2 120 369-497 231-367 (523)
281 1n11_A Ankyrin; clathrin, BAND 47.0 2.3E+02 0.0077 28.2 15.7 17 74-90 53-69 (437)
282 3eiq_C Programmed cell death p 46.6 79 0.0027 30.9 9.1 72 199-271 220-293 (358)
283 4b4t_R RPN7, 26S proteasome re 45.6 84 0.0029 31.7 9.7 57 166-222 133-194 (429)
284 3hra_A Ankyrin repeat family p 45.5 1.4E+02 0.0049 25.5 10.4 16 76-91 13-28 (201)
285 4ady_A RPN2, 26S proteasome re 45.1 3.7E+02 0.013 30.1 30.8 118 375-497 496-620 (963)
286 2nsz_A Programmed cell death p 41.3 1E+02 0.0035 24.8 7.7 63 372-434 10-77 (129)
287 3hra_A Ankyrin repeat family p 40.1 1.7E+02 0.006 24.9 10.1 154 105-266 11-173 (201)
288 3b7b_A Euchromatic histone-lys 39.8 72 0.0025 28.5 7.5 23 237-259 213-235 (237)
289 2k0q_A Putative uncharacterize 39.1 9.6 0.00033 26.6 0.9 22 653-674 8-29 (74)
290 2lo3_A SAGA-associated factor 38.1 13 0.00044 22.9 1.2 12 633-644 16-27 (44)
291 2nsz_A Programmed cell death p 37.2 1.1E+02 0.0038 24.6 7.3 62 68-129 10-76 (129)
292 1y8m_A FIS1; mitochondria, unk 36.9 1.8E+02 0.0061 24.0 13.2 67 468-549 36-106 (144)
293 2d2s_A Exocyst complex compone 36.4 95 0.0032 28.2 7.4 86 407-496 25-116 (235)
294 2zu6_B Programmed cell death p 35.2 80 0.0027 30.1 7.0 70 199-269 169-240 (307)
295 3esl_A Checkpoint serine/threo 34.2 2.4E+02 0.0082 24.8 9.9 83 386-470 61-149 (202)
296 1n11_A Ankyrin; clathrin, BAND 34.2 3E+02 0.01 27.2 12.0 327 5-367 17-371 (437)
297 2pk8_A Uncharacterized protein 34.1 80 0.0027 23.5 5.0 40 579-618 15-58 (103)
298 4ady_A RPN2, 26S proteasome re 33.5 5.6E+02 0.019 28.8 28.8 50 174-224 384-439 (963)
299 2ion_A PDCD4, programmed cell 33.3 93 0.0032 26.0 6.3 63 372-434 12-79 (152)
300 3eu9_A Huntingtin-interacting 32.6 2.5E+02 0.0086 24.5 10.6 21 238-258 214-234 (240)
301 3ljn_A Hypothetical protein; a 32.6 2E+02 0.0067 27.7 9.9 87 41-128 24-113 (364)
302 2ion_A PDCD4, programmed cell 31.4 90 0.0031 26.1 5.9 61 68-128 12-77 (152)
303 1k1a_A B-cell lymphoma 3-encod 30.6 2.8E+02 0.0095 24.4 13.2 54 5-58 12-67 (241)
304 2d2s_A Exocyst complex compone 30.4 1.9E+02 0.0065 26.2 8.4 23 102-124 24-46 (235)
305 4a1g_A Mitotic checkpoint seri 29.7 75 0.0026 26.6 5.0 27 370-396 102-128 (152)
306 3eu9_A Huntingtin-interacting 29.5 2.8E+02 0.0097 24.2 10.0 13 46-58 18-30 (240)
307 3jxi_A Vanilloid receptor-rela 28.8 64 0.0022 29.4 5.2 88 5-93 8-118 (260)
308 1oyz_A Hypothetical protein YI 27.9 3.5E+02 0.012 24.6 18.6 16 265-280 205-220 (280)
309 2wvi_A Mitotic checkpoint seri 27.2 2.8E+02 0.0097 23.4 8.7 55 417-472 77-132 (164)
310 3o48_A Mitochondria fission 1 26.9 2.5E+02 0.0087 22.7 10.4 67 468-549 37-107 (134)
311 3jxi_A Vanilloid receptor-rela 25.7 3.6E+02 0.012 24.1 10.0 24 207-230 13-36 (260)
312 4a1g_A Mitotic checkpoint seri 24.8 3E+02 0.01 22.9 8.5 53 417-470 82-135 (152)
313 4aez_C MAD3, mitotic spindle c 24.0 3.4E+02 0.012 24.2 8.6 54 416-470 130-184 (223)
314 1ug3_A EIF4GI, eukaryotic prot 23.4 4.3E+02 0.015 25.3 10.2 60 270-330 15-77 (339)
315 2etb_A Transient receptor pote 22.9 94 0.0032 28.2 5.2 88 4-93 4-115 (256)
316 3syn_E ATP-binding protein YLX 22.9 51 0.0018 16.5 1.6 17 533-549 3-19 (23)
317 1ug3_A EIF4GI, eukaryotic prot 22.3 5.2E+02 0.018 24.7 11.2 71 38-108 15-89 (339)
318 1oyz_A Hypothetical protein YI 22.2 4.4E+02 0.015 23.9 18.4 15 264-278 140-154 (280)
319 2hgo_A CASSIICOLIN; toxin, dis 21.5 18 0.00063 19.0 -0.1 13 665-677 8-22 (27)
320 1qc6_A EVH1 domain from ENA/VA 21.0 34 0.0012 27.8 1.3 41 625-673 44-88 (130)
321 2etb_A Transient receptor pote 20.8 90 0.0031 28.3 4.5 86 103-189 6-112 (256)
322 2b7e_A PRE-mRNA processing pro 20.6 1.1E+02 0.0039 20.7 3.6 30 112-141 2-31 (59)
323 3ljn_A Hypothetical protein; a 20.3 4.7E+02 0.016 24.9 10.1 15 277-292 181-195 (364)
324 3qye_A TBC1 domain family memb 20.2 3.5E+02 0.012 25.8 8.8 95 421-516 209-308 (331)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-39 Score=359.19 Aligned_cols=469 Identities=9% Similarity=-0.009 Sum_probs=403.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc--cChhHHHHHHHHHHhcC
Q 037537 2 FRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH--ANVFSFNVLLAAYARQL 79 (677)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g 79 (677)
|+.+++.+.+.|+++.|..+++.+.+. .|+..++..++.+|.+.|++++|.++|+.+.. +++.+++.++.+|.++|
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHh
Confidence 678999999999999999999999965 46889999999999999999999999999954 88999999999999999
Q ss_pred ChhHHHHHhccCCC-C------------------CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHH
Q 037537 80 RIASARQLFDQIPQ-P------------------DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITA 140 (677)
Q Consensus 80 ~~~~A~~~f~~m~~-~------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 140 (677)
++++|.++|+++.. . +..+|+.++.+|.+.|++++|+++|++|.+.+ |+..+....+..
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~ 242 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVS 242 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHH
Confidence 99999999995433 3 47899999999999999999999999999853 655443333333
Q ss_pred -hhcchh-hHHHH----HHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCC--CCeeeHHHHHHHHHhCCCc
Q 037537 141 -SSNNLC-LIKQL----HCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEI--KDEVSWNSMVVAYGQHREG 212 (677)
Q Consensus 141 -~~~~~~-~~~~i----~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~~li~~~~~~g~~ 212 (677)
....+. ....+ +..+...+......+++.++.+|.+.|++++|.++|+++ .. ++..+|+.++.+|.+.|++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~ 321 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI-NGLEKSSDLLLCKADTLFVRSRF 321 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS-TTGGGCHHHHHHHHHHHHHTTCH
T ss_pred hhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh-hcCCchHHHHHHHHHHHHHhcCH
Confidence 222222 22111 333444444455567777889999999999999999999 44 7899999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhh
Q 037537 213 LEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEE 292 (677)
Q Consensus 213 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~ 292 (677)
++|+++|++|.+.+. .+..++..++.++...|++++|.+++..+.+.. +.+..+++.++.+|.++|+ +++|.++|++
T Consensus 322 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~ 398 (597)
T 2xpi_A 322 IDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNK-ISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhcc-HHHHHHHHHH
Confidence 999999999998653 377889999999999999999999999999764 6678899999999999999 9999999998
Q ss_pred CC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCcc
Q 037537 293 IP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRI 369 (677)
Q Consensus 293 ~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~ 369 (677)
+. ..+..+|+.++..|.+. |++++|+++|++|.+. .|+. .
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~--~~~~----------------------------------~ 441 (597)
T 2xpi_A 399 SSTMDPQFGPAWIGFAHSFAIE-GEHDQAISAYTTAARL--FQGT----------------------------------H 441 (597)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHT--TTTC----------------------------------S
T ss_pred HHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--Cccc----------------------------------h
Confidence 75 35678999999999999 9999999999999875 3321 5
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHH
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLET----NIPPT--NITFVS 440 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ 440 (677)
.+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|+++|++|.+. +..|+ ..+|..
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 6678899999999999999999998864 57889999999999999999999999999886 66888 689999
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCc
Q 037537 441 VLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNA 520 (677)
Q Consensus 441 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~ 520 (677)
+..+|...|++++|.++|+.+.+. + +.+..+|..+..+|.+.|++++|.+.++++ ++++|+++
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------l~~~p~~~ 584 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLL-S-TNDANVHTAIALVYLHKKIPGLAITHLHES---------------LAISPNEI 584 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh-C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH---------------HhcCCCCh
Confidence 999999999999999999999876 2 347899999999999999999999999877 68899999
Q ss_pred hhHHHHHHHHHh
Q 037537 521 VPYVMLANIYAA 532 (677)
Q Consensus 521 ~~~~~l~~~y~~ 532 (677)
..|..|.++|..
T Consensus 585 ~~~~~l~~~~~~ 596 (597)
T 2xpi_A 585 MASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHTTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-37 Score=342.02 Aligned_cols=461 Identities=9% Similarity=-0.026 Sum_probs=271.4
Q ss_pred HHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHH
Q 037537 75 YARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLH 152 (677)
Q Consensus 75 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~ 152 (677)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..++...++ .+..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 44556666666667666666677777777777777777777777777763 34666666667777766666 555555
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCC------------------CeeeHHHHHHHHHhCCCchH
Q 037537 153 CLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIK------------------DEVSWNSMVVAYGQHREGLE 214 (677)
Q Consensus 153 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~------------------~~~~~~~li~~~~~~g~~~~ 214 (677)
..+.. .++++.+++.++.+|.++|++++|.++|+++.+.. +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 54432 26778889999999999999999999999651222 47889999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HhHHHHHHHHHccCCChHHH--HHH-HHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHH
Q 037537 215 ALQLFQEMVSLQLGLD-MYTLASILTAFTSLEDLVGG--LQF-HAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVF 290 (677)
Q Consensus 215 A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f 290 (677)
|+++|++|.+.+ |+ ...+..+...+...+..+.. ..+ +..+...+..+...+++.++.+|.++|+ +++|.++|
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~ 295 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE-LRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH-HHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch-HHHHHHHH
Confidence 999999998854 44 33333333322222111110 011 2222222333333444445555555555 56666666
Q ss_pred hhCCC--CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccC
Q 037537 291 EEIPQ--PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSN 367 (677)
Q Consensus 291 ~~~~~--~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~ 367 (677)
+++.+ ++..+|+.++.+|.+. |++++|+++|++|.+.+ ..+..++..++..+...| .+.+..++..+.+. .|+
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 371 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVR-SRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPE 371 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT
T ss_pred HHhhcCCchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--Ccc
Confidence 55554 5555566666666555 55566666666555443 124445555555555555 55555555555522 222
Q ss_pred ccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037537 368 RISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSA 444 (677)
Q Consensus 368 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 444 (677)
...+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 255555555666666666666665555432 234455556666666666666666666555542 3345555555555
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC-------CCCCCh--HH----------
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM-------PFNPGS--IA---------- 505 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~~~~--~~---------- 505 (677)
|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+. ..
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 55666666666666555543 1224555555566666666666665555554 223332 11
Q ss_pred -------HHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 506 -------LKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 506 -------~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
....+++++++|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 33444557888999999999999999999999999999999874
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1e-27 Score=254.63 Aligned_cols=211 Identities=12% Similarity=0.137 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHCCCCCCH-hHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhh
Q 037537 214 EALQLFQEMVSLQLGLDM-YTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEE 292 (677)
Q Consensus 214 ~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~ 292 (677)
.+..+.+++.+.++.+.. ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+. ..
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~-~~-------- 78 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEA-AT-------- 78 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCC-CS--------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCc-hh--------
Confidence 344555666666655443 35677777777777777777777777777777777777777777777654 11
Q ss_pred CCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchh
Q 037537 293 IPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVN 372 (677)
Q Consensus 293 ~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 372 (677)
...+. +..++|+++|++|...|+.||..||
T Consensus 79 --------------~~~~~-~~l~~A~~lf~~M~~~G~~Pd~~ty----------------------------------- 108 (501)
T 4g26_A 79 --------------ESSPN-PGLSRGFDIFKQMIVDKVVPNEATF----------------------------------- 108 (501)
T ss_dssp --------------SSSCC-HHHHHHHHHHHHHHHTTCCCCHHHH-----------------------------------
T ss_pred --------------hhhhc-chHHHHHHHHHHHHHhCCCCCHHHH-----------------------------------
Confidence 11234 6688999999999999999996665
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPE----HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHT 448 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 448 (677)
|+||++|+++|++++|.++|++|.+ ||.++||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 6777777888888888888888753 788999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhc
Q 037537 449 GKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRA 484 (677)
Q Consensus 449 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 484 (677)
|++++|.+++++|++. |..|+..||+.+++.+.+.
T Consensus 189 g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 189 KNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999998 9999999999999988764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=4.2e-27 Score=249.97 Aligned_cols=182 Identities=11% Similarity=0.019 Sum_probs=163.7
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh-----------hHHHHHHHHHHhCCCCChh
Q 037537 97 VSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC-----------LIKQLHCLAIYCGFDHYAS 165 (677)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----------~~~~i~~~~~~~g~~~~~~ 165 (677)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+. .+.+++..|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45888999999999999999999999999999999999999999986542 5778888888889899999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhc---CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHc
Q 037537 166 VNNSLLTCYSRNGFLDEAKRVFYEM---GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFT 242 (677)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 242 (677)
+||+||.+|++.|++++|.++|++| +..||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999998 7788999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHH
Q 037537 243 SLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAK 278 (677)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 278 (677)
+.|++++|.+++++|.+.|..|+..+++.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 999999999999999999999999999988888876
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=5.7e-24 Score=221.53 Aligned_cols=368 Identities=14% Similarity=0.124 Sum_probs=253.5
Q ss_pred HHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHH
Q 037537 74 AYARQLRIASARQLFDQIPQ--P-DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQ 150 (677)
Q Consensus 74 ~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 150 (677)
.+.+.|++++|.+.|+.+.+ | +...+..+...+.+.|++++|...++...+..
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~------------------------ 63 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN------------------------ 63 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------------
Confidence 33445555555555544432 2 22334444455555555555555555544321
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 037537 151 LHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLG 228 (677)
Q Consensus 151 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 228 (677)
+.+...+..+...|.+.|++++|.+.|+++ ...| +..+|..+...+.+.|++++|++.|+++.+. .
T Consensus 64 ----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~ 131 (388)
T 1w3b_A 64 ----------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--N 131 (388)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--C
T ss_pred ----------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 223344455566666666666666666665 2223 2335666666666666666666666666653 2
Q ss_pred CCH-hHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHH
Q 037537 229 LDM-YTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTM 304 (677)
Q Consensus 229 pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~l 304 (677)
|+. ..+..+...+...|++++|.+.+..+++.. +.+..+++.+...|.+.|+ +++|...|+++. ..+...|..+
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l 209 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGE-IWLAIHHFEKAVTLDPNFLDAYINL 209 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 432 334445555566666666666666666553 3345566666666666666 777777776654 2334566666
Q ss_pred HhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCC
Q 037537 305 ISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGN 384 (677)
Q Consensus 305 i~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 384 (677)
...+... |++++|+..|++.... .|+. ..++..+...|.+.|+
T Consensus 210 g~~~~~~-~~~~~A~~~~~~al~~--~p~~----------------------------------~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 210 GNVLKEA-RIFDRAVAAYLRALSL--SPNH----------------------------------AVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHTT-TCTTHHHHHHHHHHHH--CTTC----------------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHc-CCHHHHHHHHHHHHhh--CcCC----------------------------------HHHHHHHHHHHHHcCC
Confidence 7777777 7788888887777653 3432 5567788889999999
Q ss_pred HHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037537 385 LEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMM 461 (677)
Q Consensus 385 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 461 (677)
+++|.+.|+++.+ | +..+|..+...|.+.|++++|++.|+++.+.. +++..++..+...+...|++++|...++.+
T Consensus 253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999988754 3 45689999999999999999999999999864 667889999999999999999999999999
Q ss_pred HHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 037537 462 KDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGK 535 (677)
Q Consensus 462 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~ 535 (677)
.+. .| +...+..+..+|.+.|++++|.+.++++ ++++|+++.+|..+..+|...|+
T Consensus 332 l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---------------~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 332 LEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEA---------------IRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTS---CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH---------------HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred Hhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HhhCCCCHHHHHhHHHHHHHccC
Confidence 853 45 5778999999999999999999999987 47788899999999998877664
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=9.6e-24 Score=219.83 Aligned_cols=355 Identities=15% Similarity=0.168 Sum_probs=301.5
Q ss_pred HHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 037537 102 LISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLD 181 (677)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 181 (677)
+...+.+.|++++|++.++++.+. .|+.. ..+..+...+.+.|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~--------------------------------~~~~~l~~~~~~~~~~~ 50 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNT--------------------------------GVLLLLSSIHFQCRRLD 50 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCH--------------------------------HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCH--------------------------------HHHHHHHHHHHHcCCHH
Confidence 345677899999999999988765 34433 33355567788999999
Q ss_pred HHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCCChHHHHHHHHHHH
Q 037537 182 EAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-MYTLASILTAFTSLEDLVGGLQFHAHLI 258 (677)
Q Consensus 182 ~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 258 (677)
+|...++.. ..+.+..+|+.+...|.+.|++++|++.|+++.+. .|+ ..++..+..++...|++++|.+.+..++
T Consensus 51 ~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (388)
T 1w3b_A 51 RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999877 23446778999999999999999999999999874 454 5678999999999999999999999999
Q ss_pred HhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcc
Q 037537 259 KSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDC 335 (677)
Q Consensus 259 ~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~ 335 (677)
+.. +.+...+..+...|...|+ +++|.+.|+++. ..+..+|+.+...+.+. |++++|+..|+++... .|+.
T Consensus 129 ~~~-p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~--~p~~- 202 (388)
T 1w3b_A 129 QYN-PDLYCVRSDLGNLLKALGR-LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVTL--DPNF- 202 (388)
T ss_dssp HHC-TTCTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH--CTTC-
T ss_pred HhC-CCcHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc--CCCc-
Confidence 875 4455677788888999899 999999999875 24567899999999999 9999999999999874 3442
Q ss_pred hHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHH
Q 037537 336 SFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQ 412 (677)
Q Consensus 336 t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 412 (677)
...+..+...|.+.|++++|...|++..+ .+..+|..+...|..
T Consensus 203 ---------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 249 (388)
T 1w3b_A 203 ---------------------------------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249 (388)
T ss_dssp ---------------------------------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH
Confidence 55677888999999999999999987653 357789999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHH
Q 037537 413 HGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAER 492 (677)
Q Consensus 413 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (677)
.|++++|++.|+++.+.+ +.+..++..+...+...|++++|...|+.+.+. .+++...+..+...|.+.|++++|.+
T Consensus 250 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 250 QGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp TTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999953 334778999999999999999999999999975 34578899999999999999999999
Q ss_pred HHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 493 LIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 493 ~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.++++ +++.|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 327 ~~~~a---------------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 327 LYRKA---------------LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHH---------------TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHH---------------HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99987 3667888999999999999999999999999998763
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=9.7e-21 Score=204.73 Aligned_cols=428 Identities=11% Similarity=0.004 Sum_probs=286.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHhhccc--cChhHHHHHHHHHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhC
Q 037537 35 YLSNHFILLYSKCGCLSAAHHAFNQTQH--ANVFSFNVLLAAYARQLRIASARQLFDQIPQ--P-DLVSYNTLISAYADC 109 (677)
Q Consensus 35 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~ 109 (677)
..+..+...+.+.|++++|...|+++.. |++.++..+..+|.+.|++++|...|+.+.+ | +..+|..+...|.+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 3455666777888888888888888877 7888888888888888888888888887653 3 456788899999999
Q ss_pred CChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhh
Q 037537 110 GDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYE 189 (677)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 189 (677)
|++++|+..|+++.+.+ +++......++..+.... ....+.+.+..
T Consensus 87 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~l~~ 132 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQ---------------------------------AMSKLKEKFGD 132 (514)
T ss_dssp TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHH---------------------------------HHHHHTTC---
T ss_pred hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHH---------------------------------HHHHHHHHHHH
Confidence 99999999999988765 233333333332211111 01111111100
Q ss_pred c---CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCC--------CCC-HhHHHHHHHHHc---cCCChHHHHHHH
Q 037537 190 M---GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQL--------GLD-MYTLASILTAFT---SLEDLVGGLQFH 254 (677)
Q Consensus 190 m---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--------~pd-~~t~~~ll~a~~---~~~~~~~a~~~~ 254 (677)
+ ...|+...++.-...............+...+..... .|+ ...+......+. +.|+++.|...+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 212 (514)
T 2gw1_A 133 IDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESF 212 (514)
T ss_dssp ------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHH
T ss_pred HHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHH
Confidence 0 0000000000000000000011111111111100000 011 222222222222 366777777777
Q ss_pred HHHHH-----hCC--------CCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC--CCChhhHHHHHhhhcccCCCHHHHH
Q 037537 255 AHLIK-----SGF--------HQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP--QPDLVLWNTMISGYSQKEEYSDQAL 319 (677)
Q Consensus 255 ~~~~~-----~g~--------~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~~~~~~~A~ 319 (677)
..+.+ ..- +.+..++..+...|...|+ +++|...|+++. .|+...|..+...|... |++++|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~A~ 290 (514)
T 2gw1_A 213 TKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND-PLGAHEDIKKAIELFPRVNSYIYMALIMADR-NDSTEYY 290 (514)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHTS-SCCTTGG
T ss_pred HHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCccHHHHHHHHHHHHHC-CCHHHHH
Confidence 77666 211 2234566677777777777 888888887764 24466777777788877 8888888
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--
Q 037537 320 GCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-- 397 (677)
Q Consensus 320 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-- 397 (677)
..|+++... .|+. ..++..+...|.+.|++++|...|++..+
T Consensus 291 ~~~~~~~~~--~~~~----------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 334 (514)
T 2gw1_A 291 NYFDKALKL--DSNN----------------------------------SSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334 (514)
T ss_dssp GHHHHHHTT--CTTC----------------------------------THHHHHHHHHHHHTTCTTHHHHHHHHHHHTC
T ss_pred HHHHHHhhc--CcCC----------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 888887753 2322 55667888889999999999999987643
Q ss_pred -CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC----hH
Q 037537 398 -HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE----GE 472 (677)
Q Consensus 398 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 472 (677)
.+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+...-.|+ ..
T Consensus 335 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 413 (514)
T 2gw1_A 335 PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIA 413 (514)
T ss_dssp SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHH
Confidence 456789999999999999999999999998853 445778889999999999999999999999865222222 33
Q ss_pred HHHHHHHHHhh---cCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 473 HYSCMIDLLGR---AGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 473 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+..+...|.+ .|++++|.+.++++ +++.|+++.+|..++.+|...|++++|...+++..+.
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKA---------------SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHH---------------HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 88999999999 99999999999876 4677889999999999999999999999999998875
Q ss_pred C
Q 037537 550 G 550 (677)
Q Consensus 550 g 550 (677)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 3
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=1.4e-19 Score=192.18 Aligned_cols=295 Identities=15% Similarity=0.099 Sum_probs=216.1
Q ss_pred CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 037537 195 DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLID 274 (677)
Q Consensus 195 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 274 (677)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34445566666666666666666666665432 1245555556666666666666666666666554 334556666666
Q ss_pred HHHHcCCCHHHHHHHHhhCCC--CC-h---hhHHHHH------------hhhcccCCCHHHHHHHHHHHhhcCCCCCcch
Q 037537 275 LYAKCSGDMRDCMKVFEEIPQ--PD-L---VLWNTMI------------SGYSQKEEYSDQALGCFKKLNRVGYHPDDCS 336 (677)
Q Consensus 275 ~y~~~g~~~~~A~~~f~~~~~--~~-~---~~~~~li------------~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t 336 (677)
.|.+.|+ +++|.+.|+++.+ |+ . ..|..++ ..+.+. |++++|+..|+++.+. .|+.
T Consensus 103 ~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~--~~~~-- 176 (450)
T 2y4t_A 103 LLLKQGK-LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS-GDYTAAIAFLDKILEV--CVWD-- 176 (450)
T ss_dssp HHHHTTC-HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH--CTTC--
T ss_pred HHHHcCC-HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCC--
Confidence 6666666 7777766666543 22 2 4444443 336677 8999999999998864 3332
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHc
Q 037537 337 FVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQH 413 (677)
Q Consensus 337 ~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 413 (677)
..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...
T Consensus 177 --------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 177 --------------------------------AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL 224 (450)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred --------------------------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 56678888999999999999999988764 4678899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHH------------HHHHhccCCHHHHHHHHHHhHHhcCCccC-----hHHHH
Q 037537 414 GIGMEALRLFEWMLETNIPPTN-ITFVSV------------LSACAHTGKVAEGQKYFSMMKDMFGFEPE-----GEHYS 475 (677)
Q Consensus 414 g~~~~A~~l~~~m~~~g~~p~~-~t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~ 475 (677)
|++++|+..|+++.+. .|+. ..+..+ ...|.+.|++++|..+|+.+.+. .|+ ..+|.
T Consensus 225 g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~ 299 (450)
T 2y4t_A 225 GDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKE 299 (450)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHH
Confidence 9999999999999874 4553 444443 67888999999999999999875 454 45788
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 476 CMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+..+|.+.|++++|.+.++++ ++++|+++.+|..++.+|...|++++|...++++.+.
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a---------------~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEV---------------LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHH---------------HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 8999999999999999999876 4667888899999999999999999999999998774
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.5e-19 Score=195.42 Aligned_cols=417 Identities=10% Similarity=0.016 Sum_probs=261.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCC
Q 037537 4 QVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLR 80 (677)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~ 80 (677)
..-..+...|+++.|...++.+++.. |++..+..+..+|.+.|++++|.+.++.+.+ .+..++..+..+|.+.|+
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhh
Confidence 44567888999999999999999987 6899999999999999999999999999887 456789999999999999
Q ss_pred hhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHH
Q 037537 81 IASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLA 155 (677)
Q Consensus 81 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~ 155 (677)
+++|...|+.+.. ++......++..+........+.+.+..+...+..|+...+..-......... ....+....
T Consensus 89 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 89 FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 9999999988753 34445555565555544444444444444333333332222111100000000 001111111
Q ss_pred HHhCC---------CCChhHHHHHHHHHH---hcCChhHHHHHHhhc-C-----C--CC--------CeeeHHHHHHHHH
Q 037537 156 IYCGF---------DHYASVNNSLLTCYS---RNGFLDEAKRVFYEM-G-----E--IK--------DEVSWNSMVVAYG 207 (677)
Q Consensus 156 ~~~g~---------~~~~~~~~~li~~~~---~~g~~~~A~~~f~~m-~-----~--~~--------~~~~~~~li~~~~ 207 (677)
..... +.+...+..+...+. +.|++++|...|+++ . . .| +...|..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 11100 111222333333333 267777777777766 1 1 11 2345666677777
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHH
Q 037537 208 QHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCM 287 (677)
Q Consensus 208 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~ 287 (677)
..|++++|+..|+++.+.. |+..++..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|+ +++|.
T Consensus 249 ~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~ 324 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN-YDQAG 324 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC-TTHHH
T ss_pred HCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC-HHHHH
Confidence 7777777777777776644 336666666677777777777777777776653 3455566667777777776 77777
Q ss_pred HHHhhCC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhc
Q 037537 288 KVFEEIP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEI 364 (677)
Q Consensus 288 ~~f~~~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~ 364 (677)
..|++.. ..+...|..+...|... |++++|+..|+++.+. .|+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~--~~~~------------------------------ 371 (514)
T 2gw1_A 325 KDFDKAKELDPENIFPYIQLACLAYRE-NKFDDCETLFSEAKRK--FPEA------------------------------ 371 (514)
T ss_dssp HHHHHHHHTCSSCSHHHHHHHHHTTTT-TCHHHHHHHHHHHHHH--STTC------------------------------
T ss_pred HHHHHHHHhChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH--cccC------------------------------
Confidence 7776643 23455666666666666 7777777777766553 2221
Q ss_pred ccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-C------cchHHHHHHHHHH---cCChHHHHHHHHHHHHCCCC
Q 037537 365 RSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-N------TVSLNSMIAGYAQ---HGIGMEALRLFEWMLETNIP 432 (677)
Q Consensus 365 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~------~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~ 432 (677)
..++..+...|.+.|++++|...|+++.+ | + ...|..+...|.. .|++++|...|+++.+.. +
T Consensus 372 ----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~ 446 (514)
T 2gw1_A 372 ----PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-P 446 (514)
T ss_dssp ----SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-T
T ss_pred ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-c
Confidence 44556677777778888888777776643 1 1 2267777777777 788888888888877743 3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 433 PTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 433 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
.+..++..+...+...|++++|...|+.+.+.
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566777777777888888888888877754
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=3.2e-19 Score=193.99 Aligned_cols=426 Identities=11% Similarity=0.011 Sum_probs=259.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHh
Q 037537 35 YLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLFDQIPQ---PDLVSYNTLISAYAD 108 (677)
Q Consensus 35 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 108 (677)
..+..+...+.+.|++++|...|+.+.. .++.++..+...|.+.|++++|.+.|+.+.+ .+..+|..+...|..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 4455555566666666666666666555 3445566666666666666666666665542 234555666666666
Q ss_pred CCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChhHHH
Q 037537 109 CGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCG--FDHYASVNNSLLTCYSRNGFLDEAK 184 (677)
Q Consensus 109 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~ 184 (677)
.|++++|+..|+.+. ..|+..... +..+...+. .+...+..++... ..+........+..|....+.+.+.
T Consensus 106 ~g~~~~A~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLS---LNGDFDGAS--IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHHh---cCCCCChHH--HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 666666666664221 122211110 000000000 1111111111100 0000011122333344445555555
Q ss_pred HHHhhcCCCCCee---eHHHHHHHHHhC--------CCchHHHHHHHHHHHCCCCCCH-hHHHHHHHHHccCCChHHHHH
Q 037537 185 RVFYEMGEIKDEV---SWNSMVVAYGQH--------REGLEALQLFQEMVSLQLGLDM-YTLASILTAFTSLEDLVGGLQ 252 (677)
Q Consensus 185 ~~f~~m~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~ 252 (677)
..+... ...+.. .+..+...+... |++++|+.+|+++.+.. |+. ..+..+
T Consensus 181 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~--------------- 242 (537)
T 3fp2_A 181 SSVNTS-SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENA--------------- 242 (537)
T ss_dssp HTSCCC-CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH---------------
T ss_pred HHHhhc-cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHH---------------
Confidence 444444 222211 122222221111 24455555555554321 221 111000
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC--CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCC
Q 037537 253 FHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP--QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGY 330 (677)
Q Consensus 253 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~ 330 (677)
..++..+...|...|+ +++|...|++.. .|+...|..+...+... |++++|+..|+++.+.
T Consensus 243 -------------~~~~~~~g~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~-- 305 (537)
T 3fp2_A 243 -------------ALALCYTGIFHFLKNN-LLDAQVLLQESINLHPTPNSYIFLALTLADK-ENSQEFFKFFQKAVDL-- 305 (537)
T ss_dssp -------------HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCHHHHHHHHHHTCCS-SCCHHHHHHHHHHHHH--
T ss_pred -------------HHHHHHHHHHHHhccc-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHh-cCHHHHHHHHHHHhcc--
Confidence 1134445556666677 788877777764 35567788888888888 8999999999988764
Q ss_pred CCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHH
Q 037537 331 HPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMI 407 (677)
Q Consensus 331 ~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li 407 (677)
.|+. ..++..+...|.+.|++++|...|++..+ .+...|..+.
T Consensus 306 ~~~~----------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 351 (537)
T 3fp2_A 306 NPEY----------------------------------PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 351 (537)
T ss_dssp CTTC----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHH
T ss_pred CCCC----------------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2332 55678888899999999999999988753 3567899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc----ChHHHHHHHHHHhh
Q 037537 408 AGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP----EGEHYSCMIDLLGR 483 (677)
Q Consensus 408 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~ 483 (677)
..|...|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+...-.+ ....+..+...|.+
T Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 352 CLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR 430 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999864 44567888999999999999999999999886521111 12234455677777
Q ss_pred c----------CChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 484 A----------GKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 484 ~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
. |++++|...+++. ++++|+++.+|..++.+|...|++++|.+.+++..+..
T Consensus 431 ~~~~~~~~~~~~~~~~A~~~~~~a---------------~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 431 QSSQDPTQLDEEKFNAAIKLLTKA---------------CELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHTC----CCHHHHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhccchhhhHhHHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 7 9999999999876 57788899999999999999999999999999988754
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=6e-20 Score=195.00 Aligned_cols=309 Identities=12% Similarity=0.057 Sum_probs=256.3
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHH
Q 037537 161 DHYASVNNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASIL 238 (677)
Q Consensus 161 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 238 (677)
+.+...+..+...|.+.|++++|..+|+++ ..+.+..+|..+...|.+.|++++|+..|+++.+.+. .+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 345667888999999999999999999988 2334678899999999999999999999999988642 3577888999
Q ss_pred HHHccCCChHHHHHHHHHHHHhCCCCch---hhHHHH------------HHHHHHcCCCHHHHHHHHhhCC---CCChhh
Q 037537 239 TAFTSLEDLVGGLQFHAHLIKSGFHQNS---HIGSGL------------IDLYAKCSGDMRDCMKVFEEIP---QPDLVL 300 (677)
Q Consensus 239 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------i~~y~~~g~~~~~A~~~f~~~~---~~~~~~ 300 (677)
.++...|+++.|.+.+..+.+.. +.+. ..+..+ ...|.+.|+ +++|...|+++. ..+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD-YTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999998764 3333 555555 344888899 999999999875 356788
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHH
Q 037537 301 WNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYS 380 (677)
Q Consensus 301 ~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~ 380 (677)
|..+...|.+. |++++|++.|+++.+. .|+. +.++..+...|.
T Consensus 180 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~--~~~~----------------------------------~~~~~~l~~~~~ 222 (450)
T 2y4t_A 180 RELRAECFIKE-GEPRKAISDLKAASKL--KNDN----------------------------------TEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHHHHHT-TCGGGGHHHHHHHHHH--HCSC----------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHh--CCCC----------------------------------HHHHHHHHHHHH
Confidence 99999999999 9999999999998864 2221 566788889999
Q ss_pred ccCCHHHHHHHHhcCCC--C-CcchHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHH
Q 037537 381 KCGNLEDARRLFDRMPE--H-NTVSLNSM------------IAGYAQHGIGMEALRLFEWMLETNIPPT-----NITFVS 440 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~--~-~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ 440 (677)
+.|++++|...|+++.+ | +...|..+ ...|...|++++|+..|+++.+. .|+ ...+..
T Consensus 223 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKER 300 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHH
Confidence 99999999999988754 3 33445444 78899999999999999999984 455 347888
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCC
Q 037537 441 VLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSN 519 (677)
Q Consensus 441 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~ 519 (677)
+...+.+.|++++|...++.+.+. .| +...|..+..+|.+.|++++|.+.++++ ++++|++
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------l~~~p~~ 362 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETA---------------QEHNEND 362 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTSSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------HHhCcch
Confidence 889999999999999999999865 34 6789999999999999999999999877 5778888
Q ss_pred chhHHHHHHH
Q 037537 520 AVPYVMLANI 529 (677)
Q Consensus 520 ~~~~~~l~~~ 529 (677)
+..+..+..+
T Consensus 363 ~~~~~~l~~~ 372 (450)
T 2y4t_A 363 QQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888833
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=3.2e-16 Score=160.34 Aligned_cols=290 Identities=14% Similarity=0.091 Sum_probs=197.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHc
Q 037537 200 NSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKC 279 (677)
Q Consensus 200 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 279 (677)
..+...+...|++++|+..|+++.+... .+..++..+...+...|+++.|...+..+++.. +.+...+..+...|.+.
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHc
Confidence 3334444444444444444444443211 123344444444444444444444444444432 22334444455555555
Q ss_pred CCCHHHHHHHHhhCCC--C----ChhhHHH------------HHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 037537 280 SGDMRDCMKVFEEIPQ--P----DLVLWNT------------MISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVI 341 (677)
Q Consensus 280 g~~~~~A~~~f~~~~~--~----~~~~~~~------------li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll 341 (677)
|+ .++|...|++..+ | +...|.. +...+... |++++|++.|+++.+. .|+.
T Consensus 85 ~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~--~~~~------- 153 (359)
T 3ieg_A 85 GK-LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG-ADYTAAITFLDKILEV--CVWD------- 153 (359)
T ss_dssp TC-HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTC-------
T ss_pred CC-hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHh--CCCc-------
Confidence 55 5555555554432 2 1222222 24566777 9999999999988764 3332
Q ss_pred HHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHH
Q 037537 342 SACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGME 418 (677)
Q Consensus 342 ~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 418 (677)
..++..+...|.+.|++++|...|++..+ .+...|..+...|...|++++
T Consensus 154 ---------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 154 ---------------------------AELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp ---------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred ---------------------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 55667888899999999999999998754 466789999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHH------------HHHHHHhccCCHHHHHHHHHHhHHhcCCccCh-----HHHHHHHHH
Q 037537 419 ALRLFEWMLETNIPPT-NITFV------------SVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG-----EHYSCMIDL 480 (677)
Q Consensus 419 A~~l~~~m~~~g~~p~-~~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~ 480 (677)
|...|++..+. .|+ ..++. .+...+...|++++|...++.+.+. .|+. ..+..+...
T Consensus 207 A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 207 SLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHH
Confidence 99999999985 344 33333 2255688999999999999999876 3442 335567889
Q ss_pred HhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 481 LGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
|.+.|++++|.+.+++. ++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 282 ~~~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEV---------------LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHccCHHHHHHHHHHH---------------HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999876 4678889999999999999999999999999998764
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.77 E-value=1.8e-16 Score=172.18 Aligned_cols=413 Identities=9% Similarity=0.050 Sum_probs=294.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhc
Q 037537 2 FRQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQ 78 (677)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 78 (677)
|..+-..+...|+++.|...++.+++.. |.++..+..+...|.+.|++++|.+.++++.. .+..++..+...|...
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence 3445668889999999999999999987 77889999999999999999999999999887 4567889999999999
Q ss_pred CChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhc------CCCCCcccHHHHHHHhhcchhhHHHHH
Q 037537 79 LRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREK------RFDTDGFTLSGLITASSNNLCLIKQLH 152 (677)
Q Consensus 79 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~~~~i~ 152 (677)
|++++|...|+.+. .+....+..+..+...+...+|...++++... ...|+.......+..+ .....+
T Consensus 107 g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~- 180 (537)
T 3fp2_A 107 GNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF----DSHLEV- 180 (537)
T ss_dssp TCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS----CHHHHH-
T ss_pred CCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc----ChHHHH-
Confidence 99999999997443 23333334455666677778999999998653 2234433333332211 100000
Q ss_pred HHHHHhCCCCChh---HHHHHHHHHHhc--------CChhHHHHHHhhc-CCCCC--------eeeHHHHHHHHHhCCCc
Q 037537 153 CLAIYCGFDHYAS---VNNSLLTCYSRN--------GFLDEAKRVFYEM-GEIKD--------EVSWNSMVVAYGQHREG 212 (677)
Q Consensus 153 ~~~~~~g~~~~~~---~~~~li~~~~~~--------g~~~~A~~~f~~m-~~~~~--------~~~~~~li~~~~~~g~~ 212 (677)
.. .......+.. ....+...+... |++++|..+|+++ ...|+ ..+|..+...+...|++
T Consensus 181 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 181 SS-VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HT-SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HH-HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 00 0001111111 333444343332 4789999999998 33343 22467777888999999
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhh
Q 037537 213 LEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEE 292 (677)
Q Consensus 213 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~ 292 (677)
++|+..|++..+. .|+..++..+...+...|+++.|...+..+.+.. +.+..++..+...|...|+ +++|...|++
T Consensus 260 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~ 335 (537)
T 3fp2_A 260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD-YKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC-HHHHHHHHHH
Confidence 9999999999885 4667888889999999999999999999999875 4567788889999999888 9999999987
Q ss_pred CC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCcc
Q 037537 293 IP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRI 369 (677)
Q Consensus 293 ~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~ 369 (677)
.. ..+...|..+...|... |++++|+..|+++.+. .|+. .
T Consensus 336 a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~--~~~~----------------------------------~ 378 (537)
T 3fp2_A 336 AQSLNPENVYPYIQLACLLYKQ-GKFTESEAFFNETKLK--FPTL----------------------------------P 378 (537)
T ss_dssp HHHHCTTCSHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTC----------------------------------T
T ss_pred HHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCC----------------------------------h
Confidence 65 34567788888888888 9999999999888764 2332 4
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCC--C-------CcchHHHHHHHHHHc----------CChHHHHHHHHHHHHCC
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPE--H-------NTVSLNSMIAGYAQH----------GIGMEALRLFEWMLETN 430 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-------~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g 430 (677)
.++..+...|.+.|++++|...|+++.+ | ....+..+...|... |++++|+..|++..+..
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 4566777888888888888888877643 1 111234445666666 88888888888887753
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 431 IPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 431 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
+.+..++..+...+...|++++|...|+.+.+.
T Consensus 459 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 459 -PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 344667777888888888888888888888764
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.74 E-value=7.1e-16 Score=157.76 Aligned_cols=310 Identities=12% Similarity=0.056 Sum_probs=247.2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 037537 164 ASVNNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAF 241 (677)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 241 (677)
+..+..+...+.+.|++++|...|+++ ..+.+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 445667778899999999999999987 223356788999999999999999999999998753 12567888888899
Q ss_pred ccCCChHHHHHHHHHHHHhCCC--CchhhHHHH------------HHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHH
Q 037537 242 TSLEDLVGGLQFHAHLIKSGFH--QNSHIGSGL------------IDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTM 304 (677)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l------------i~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~l 304 (677)
...|+++.|...+..+.+.... .+...+..+ ...|...|+ +++|.+.|+++. ..+...|..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD-YTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999876410 244455444 578888899 999999999875 3566788888
Q ss_pred HhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCC
Q 037537 305 ISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGN 384 (677)
Q Consensus 305 i~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 384 (677)
...+... |++++|+..|++.... .|+. ..++..+...|.+.|+
T Consensus 161 ~~~~~~~-~~~~~A~~~~~~~~~~--~~~~----------------------------------~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 161 AECFIKE-GEPRKAISDLKAASKL--KSDN----------------------------------TEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHTT--CSCC----------------------------------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHC-CCHHHHHHHHHHHHHh--CCCC----------------------------------HHHHHHHHHHHHHcCC
Confidence 8999999 9999999999998864 3442 5566778888889999
Q ss_pred HHHHHHHHhcCCC--C-CcchHH------------HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHH
Q 037537 385 LEDARRLFDRMPE--H-NTVSLN------------SMIAGYAQHGIGMEALRLFEWMLETNIPPTN-----ITFVSVLSA 444 (677)
Q Consensus 385 ~~~A~~~~~~~~~--~-~~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a 444 (677)
+++|...|+...+ | +...|. .+...+...|++++|+..|+++.+.. |+. ..+..+...
T Consensus 204 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHH
Confidence 9999999987754 2 233333 23667899999999999999999853 443 234456778
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhH
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPY 523 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~ 523 (677)
+...|++++|...++...+. .| +...+..+...|.+.|++++|.+.+++. ++++|+++..+
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a---------------~~~~p~~~~~~ 343 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYEAA---------------QEHNENDQQIR 343 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTCTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HhcCCCChHHH
Confidence 89999999999999999875 44 6788999999999999999999999977 57788888888
Q ss_pred HHHHHHHHh
Q 037537 524 VMLANIYAA 532 (677)
Q Consensus 524 ~~l~~~y~~ 532 (677)
..|..++..
T Consensus 344 ~~l~~~~~~ 352 (359)
T 3ieg_A 344 EGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776544
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=1.4e-16 Score=161.17 Aligned_cols=289 Identities=13% Similarity=0.109 Sum_probs=108.7
Q ss_pred ccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhc
Q 037537 46 KCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREK 125 (677)
Q Consensus 46 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 125 (677)
+.|++++|.+.++++..| .+|+.|..++.+.|++++|.+.|.+. +|..+|..++..+.+.|++++|...++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 667788888888888544 48888888888888888888888653 56668888888888888888888866666553
Q ss_pred CCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHH
Q 037537 126 RFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMV 203 (677)
Q Consensus 126 g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li 203 (677)
.+++.+.+.++.++.+.++ .+.+++. .|+...|+.+.+.|...|.+++|...|..+ . .|..++
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-~-----n~~~LA 155 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-S-----NFGRLA 155 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-T-----CHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-----hHHHHH
Confidence 3445666666666666655 3333221 345556677777777777777777777776 2 577777
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCH
Q 037537 204 VAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDM 283 (677)
Q Consensus 204 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 283 (677)
.++.+.|++++|++.++++ .+..||..++.+|...|+++.|...... +...+.-...++..|.+.|. +
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~-~ 223 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGY-F 223 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTC-H
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCC-H
Confidence 7777777777777777766 2567777777777777777777443322 12222233456677777777 7
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHH
Q 037537 284 RDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTI 360 (677)
Q Consensus 284 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~ 360 (677)
++|..+++.... .....|+-|--.|++- ++++.++.++... ...-...+|++|..
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky--~p~k~~ehl~~~~------~~ini~k~~~~~~~-------------- 281 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKF--KPQKMREHLELFW------SRVNIPKVLRAAEQ-------------- 281 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT--CHHHHHHHHHHHS------TTSCHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHH------HHhcCcHHHHHHHH--------------
Confidence 777777766543 3344566665555543 2344444333222 12334456666665
Q ss_pred HhhcccCccchhHHHHHHHHccCCHHHHHHHHhcC
Q 037537 361 KIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRM 395 (677)
Q Consensus 361 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 395 (677)
..+|..++-.|.+.++++.|....-.-
T Consensus 282 --------~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 282 --------AHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp --------TTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred --------HHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 778888888888888888887765443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.72 E-value=2.6e-15 Score=151.66 Aligned_cols=287 Identities=13% Similarity=0.059 Sum_probs=217.5
Q ss_pred CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHH
Q 037537 194 KDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLI 273 (677)
Q Consensus 194 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 273 (677)
.+...+..+...+...|++++|+++|+++.+... .+...+..+...+...|+++.|...+..+++.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 3445566666666777777777777777765431 234445555566666777777777777776654 44566777777
Q ss_pred HHHHHcC-CCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccCh
Q 037537 274 DLYAKCS-GDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSP 349 (677)
Q Consensus 274 ~~y~~~g-~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 349 (677)
..|...| + .++|...|++..+ .+...|..+...+... |++++|+..|++..+.. |+.
T Consensus 98 ~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~--~~~--------------- 158 (330)
T 3hym_B 98 CYYLMVGHK-NEHARRYLSKATTLEKTYGPAWIAYGHSFAVE-SEHDQAMAAYFTAAQLM--KGC--------------- 158 (330)
T ss_dssp HHHHHSCSC-HHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHT--TTC---------------
T ss_pred HHHHHhhhh-HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhc--ccc---------------
Confidence 8888888 6 8888888877542 4566788888888888 89999999998887642 332
Q ss_pred hHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 037537 350 SLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWM 426 (677)
Q Consensus 350 ~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 426 (677)
...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++.
T Consensus 159 -------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 159 -------------------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp -------------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34456678888899999999999987654 35678899999999999999999999998
Q ss_pred HHCC--------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCC
Q 037537 427 LETN--------IPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 427 ~~~g--------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (677)
.+.. .+.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a- 296 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTA- 296 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTT-
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHH-
Confidence 8732 1333578899999999999999999999999875 2335778999999999999999999999988
Q ss_pred CCCChHHHHHHHHHhccCCCCchhHHHHHHHH-HhcCChH
Q 037537 499 FNPGSIALKAANHFLQLEPSNAVPYVMLANIY-AASGKWE 537 (677)
Q Consensus 499 ~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y-~~~g~~~ 537 (677)
++++|+++..+..+..++ ...|+.+
T Consensus 297 --------------l~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 297 --------------LGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp --------------TTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred --------------HccCCCchHHHHHHHHHHHHHhCchh
Confidence 477888999999999988 4556543
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=4.2e-16 Score=157.74 Aligned_cols=332 Identities=13% Similarity=0.073 Sum_probs=159.2
Q ss_pred HhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHH
Q 037537 175 SRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFH 254 (677)
Q Consensus 175 ~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 254 (677)
-+.|++++|.++++++ ..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.++
T Consensus 14 ~~~~~ld~A~~fae~~-~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-NEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-CCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4778999999999999 555 49999999999999999999999753 67889999999999999999999988
Q ss_pred HHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCc
Q 037537 255 AHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDD 334 (677)
Q Consensus 255 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~ 334 (677)
...++. .+++.+.+.|+.+|.++|+ ++++.++++ .|+..+|+.+...|... |.+++|..+|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~-l~e~e~f~~---~pn~~a~~~IGd~~~~~-g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNR-LAELEEFIN---GPNNAHIQQVGDRCYDE-KMYDAAKLLYNNV--------- 148 (449)
T ss_dssp --------------------------C-HHHHTTTTT---CC-----------------CTTTHHHHHHHT---------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCC-HHHHHHHHc---CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHh---------
Confidence 888774 5668899999999999999 999988886 47888999999999999 9999999999977
Q ss_pred chHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHc
Q 037537 335 CSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQH 413 (677)
Q Consensus 335 ~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 413 (677)
..|..+..++.++| .+.+.+....+ .+ +.+|..++.+|...|+++.|......+. .++.....++..|.+.
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~-~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA------NS-TRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDR 220 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH------TC-HHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc------CC-chhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHC
Confidence 37899999999999 99988888777 24 8899999999999999999988877765 3444455789999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHhHHhcCCcc------ChHHHHHHHHHHhhcC
Q 037537 414 GIGMEALRLFEWMLETNIPPTNITFVSVLSAC--AHTGKVAEGQKYFSMMKDMFGFEP------EGEHYSCMIDLLGRAG 485 (677)
Q Consensus 414 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g 485 (677)
|++++|+.+++..+... +--...|+-+--++ .+.+++.+..+.|..-. +++| +..+|.-++..|..-+
T Consensus 221 G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i---ni~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 221 GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS---CHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998644 33344555444444 45667777777776433 5565 4678999999999999
Q ss_pred ChHHHHHHHHhCCCC-CChHH--------------HHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 037537 486 KLTDAERLIEAMPFN-PGSIA--------------LKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 486 ~~~~A~~~~~~m~~~-~~~~~--------------~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 546 (677)
+++.|...+-+-+.. .+... -++..-.++-.| ...+-|..++...=+...+.+++++.
T Consensus 297 e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 297 EYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp CHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred hHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 999998877655322 11111 222222333333 44566666665555666666655543
No 18
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=5e-18 Score=184.74 Aligned_cols=152 Identities=14% Similarity=0.205 Sum_probs=127.1
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCC-------CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMP-------EHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSV 441 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 441 (677)
..+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 5689999999999999999999997753 489999999999999999999999999999999999999999999
Q ss_pred HHHHhccCC-HHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCc
Q 037537 442 LSACAHTGK-VAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNA 520 (677)
Q Consensus 442 l~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~ 520 (677)
|.++++.|. .++|.++|++|.+. |+.||..+|++++....|.+-++...++..++.-.|.. |+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~-------------~~~~ 272 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL-------------PPPV 272 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCC-------------CCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCC-------------cccc
Confidence 999999997 57899999999999 99999999999999888876555555543333211111 1223
Q ss_pred hhHHHHHHHHHhcC
Q 037537 521 VPYVMLANIYAASG 534 (677)
Q Consensus 521 ~~~~~l~~~y~~~g 534 (677)
.+-..|.+.|++.|
T Consensus 273 ~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 273 NTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCTTTHHHHCCCS
T ss_pred cchHHHHHHHccCC
Confidence 44556778888766
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.70 E-value=2.8e-15 Score=151.47 Aligned_cols=267 Identities=12% Similarity=0.073 Sum_probs=223.3
Q ss_pred CCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHH
Q 037537 227 LGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNT 303 (677)
Q Consensus 227 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~ 303 (677)
.+.+...+..+...+...|+++.|.+++..+.+.. +.+...+..++..+.+.|+ .++|...|+++. ..+...|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNK-ANELFYLSHKLVDLYPSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhh-HHHHHHHHHHHHHhCcCCHHHHHH
Confidence 44566677788888888899999999999998875 4556677778888888898 999999998875 346678888
Q ss_pred HHhhhcccCC-CHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHcc
Q 037537 304 MISGYSQKEE-YSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKC 382 (677)
Q Consensus 304 li~~~~~~~~-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~ 382 (677)
+...+... | ++++|...|++.... .|+. ...+..+...|...
T Consensus 96 l~~~~~~~-~~~~~~A~~~~~~a~~~--~~~~----------------------------------~~~~~~l~~~~~~~ 138 (330)
T 3hym_B 96 VGCYYLMV-GHKNEHARRYLSKATTL--EKTY----------------------------------GPAWIAYGHSFAVE 138 (330)
T ss_dssp HHHHHHHS-CSCHHHHHHHHHHHHTT--CTTC----------------------------------THHHHHHHHHHHHH
T ss_pred HHHHHHHh-hhhHHHHHHHHHHHHHh--CCcc----------------------------------HHHHHHHHHHHHHc
Confidence 88888888 8 899999999988764 3432 55678888999999
Q ss_pred CCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037537 383 GNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFS 459 (677)
Q Consensus 383 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 459 (677)
|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.. +.+..++..+...+...|++++|...++
T Consensus 139 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 139 SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999998754 346778889999999999999999999999864 4557889999999999999999999999
Q ss_pred HhHHhcC-------CccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 037537 460 MMKDMFG-------FEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA 532 (677)
Q Consensus 460 ~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~ 532 (677)
.+.+... .......+..+...|.+.|++++|.+.+++. +++.|+++.+|..++.+|..
T Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------~~~~~~~~~~~~~la~~~~~ 282 (330)
T 3hym_B 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA---------------LVLIPQNASTYSAIGYIHSL 282 (330)
T ss_dssp HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHSTTCSHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------HhhCccchHHHHHHHHHHHH
Confidence 9987521 1334678999999999999999999999876 46788899999999999999
Q ss_pred cCChHHHHHHHHHHHh
Q 037537 533 SGKWEEVATIRRLMRD 548 (677)
Q Consensus 533 ~g~~~~a~~~~~~m~~ 548 (677)
.|++++|.+.+++..+
T Consensus 283 ~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 283 MGNFENAVDYFHTALG 298 (330)
T ss_dssp HTCHHHHHHHHHTTTT
T ss_pred hccHHHHHHHHHHHHc
Confidence 9999999999987654
No 20
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=6.5e-13 Score=149.47 Aligned_cols=478 Identities=9% Similarity=0.054 Sum_probs=286.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHH----------HHhhccccChhH-----
Q 037537 3 RQVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHH----------AFNQTQHANVFS----- 67 (677)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~----------~~~~~~~~~~~~----- 67 (677)
..|+..+-.+++++..+-.++..+..| ..++.++|+|.+.|...++-.+..- +=.-..+.|+..
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay 921 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAY 921 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHh
Confidence 457777888888888888899999998 6789999999999987654433210 000111122221
Q ss_pred -----HHHHHHHHHhcCChhH-HHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHh----cCCCCCcccHHHH
Q 037537 68 -----FNVLLAAYARQLRIAS-ARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMRE----KRFDTDGFTLSGL 137 (677)
Q Consensus 68 -----~~~li~~~~~~g~~~~-A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~~~l 137 (677)
-..||+..-+.+-+.. |+-+.++ .|...|+.++. ..+ +-=.++.+.-.. ....|+.. +..
T Consensus 922 ~~g~~d~eli~vt~~n~l~k~~arylv~r---~d~~lW~~vl~---~~n--~~RR~Lidqv~a~aL~e~~~PeeV--s~~ 991 (1630)
T 1xi4_A 922 ERGQCDLELINVCNENSLFKSLSRYLVRR---KDPELWGSVLL---ESN--PYRRPLIDQVVQTALSETQDPEEV--SVT 991 (1630)
T ss_pred cccCCcHHHHHHHhcchhHHHHHHHHHHh---cCHHHHHHHhc---CCc--HHHHHHHHHHHHhhcccccCHHHh--HHH
Confidence 1122222222222221 1111111 22222332221 000 000011111111 11122222 223
Q ss_pred HHHhhcchh--hHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCch
Q 037537 138 ITASSNNLC--LIKQLHCLAIYCG--FDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGL 213 (677)
Q Consensus 138 l~a~~~~~~--~~~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~ 213 (677)
.+++...+. .+-.+++.++..+ +..+....+.|+.+..+. +..+..+..++. ..- ....+...+...|.++
T Consensus 992 vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kL-d~~---d~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRL-DNY---DAPDIANIAISNELFE 1066 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHh-hhc---cHHHHHHHHHhCCCHH
Confidence 333333333 3333443333211 123445556666666666 455566665555 222 2455777778888888
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhC
Q 037537 214 EALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEI 293 (677)
Q Consensus 214 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~ 293 (677)
+|..+|++.. -.......++. ..+++++|.++...+ .+..+|..+..++.+.|+ +++|...|.+.
T Consensus 1067 EAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~-~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1067 EAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM-VKEAIDSYIKA 1131 (1630)
T ss_pred HHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC-HHHHHHHHHhc
Confidence 8888888752 11122222322 566788887777654 346788888888888888 88888888765
Q ss_pred CCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchh
Q 037537 294 PQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVN 372 (677)
Q Consensus 294 ~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~ 372 (677)
.|...|..++..+.+. |++++|.+.|....+.. ++....+.+..++++.+ ++...... + .++ ...+
T Consensus 1132 --dD~say~eVa~~~~~l-GkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n-~ad~ 1198 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTS-GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN-NAHI 1198 (1630)
T ss_pred --CChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC-HHHH
Confidence 5666777788888888 88888888888766643 33333334777777777 65433221 1 223 4455
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVA 452 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 452 (677)
..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. .+..+|..+-.+|...|++.
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHH
Confidence 66888888888899998888885 47888888888888888888888876 34578888888888888888
Q ss_pred HHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCC-CCCChHH--------------------HHHHHH
Q 037537 453 EGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMP-FNPGSIA--------------------LKAANH 511 (677)
Q Consensus 453 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~--------------------~~~~~~ 511 (677)
.|...... +..+.+.+..++..|.+.|.+++|..+++... .++.... .+....
T Consensus 1268 LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1268 LAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 87775543 33456667788888888888888888887652 1221111 111112
Q ss_pred HhccCC-----CCchhHHHHHHHHHhcCChHHHHH
Q 037537 512 FLQLEP-----SNAVPYVMLANIYAASGKWEEVAT 541 (677)
Q Consensus 512 l~~l~p-----~~~~~~~~l~~~y~~~g~~~~a~~ 541 (677)
-..+.| .+...|.-+.-.|.+.|+|+.|..
T Consensus 1342 rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1342 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 223333 466779999999999999999984
No 21
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=4.4e-15 Score=147.01 Aligned_cols=226 Identities=12% Similarity=0.045 Sum_probs=186.1
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhcc
Q 037537 268 IGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNL 347 (677)
Q Consensus 268 ~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 347 (677)
....+..+|...|+ .+.|...++....|+..++..+...+... ++.++|++.++++...+..|+.
T Consensus 36 ~~~~l~r~yi~~g~-~~~al~~~~~~~~~~~~a~~~la~~~~~~-~~~~~A~~~l~~ll~~~~~P~~------------- 100 (291)
T 3mkr_A 36 RDVFLYRAYLAQRK-YGVVLDEIKPSSAPELQAVRMFAEYLASH-SRRDAIVAELDREMSRSVDVTN------------- 100 (291)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHSCTTSCHHHHHHHHHHHHHHCS-TTHHHHHHHHHHHHHSCCCCSC-------------
T ss_pred HHHHHHHHHHHCCC-HHHHHHHhcccCChhHHHHHHHHHHHcCC-CcHHHHHHHHHHHHhcccCCCC-------------
Confidence 33445677888888 88888888776566777888888888888 8999999999999887767775
Q ss_pred ChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 037537 348 SPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWML 427 (677)
Q Consensus 348 ~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 427 (677)
+.++..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.
T Consensus 101 ---------------------~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 101 ---------------------TTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34456677889999999999999999 4577789999999999999999999999999
Q ss_pred HCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChH
Q 037537 428 ETNIPPTNITF---VSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSI 504 (677)
Q Consensus 428 ~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 504 (677)
+. .|+.... ...+..+...|++++|..+|+.+.+. .+.+...++.+..+|.+.|++++|.+.+++.
T Consensus 158 ~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a------- 226 (291)
T 3mkr_A 158 DQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA------- 226 (291)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------
T ss_pred hh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-------
Confidence 85 4664311 12334444569999999999999986 3457889999999999999999999999976
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHhcCChHH-HHHHHHHHHhCC
Q 037537 505 ALKAANHFLQLEPSNAVPYVMLANIYAASGKWEE-VATIRRLMRDRG 550 (677)
Q Consensus 505 ~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~m~~~g 550 (677)
++++|+++.++..++..+...|++++ +.++++++.+..
T Consensus 227 --------l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 227 --------LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp --------HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred --------HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 68889999999999999999999986 578998887643
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.69 E-value=6.5e-16 Score=158.98 Aligned_cols=280 Identities=9% Similarity=-0.045 Sum_probs=179.9
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHhhhcc
Q 037537 234 LASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTMISGYSQ 310 (677)
Q Consensus 234 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~ 310 (677)
+..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|+ +++|...|+++. ..+..+|..+...|..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ-ELLAISALRRCLELKPDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444432 2334445555555555555 566655555443 2345566666677777
Q ss_pred cCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHH
Q 037537 311 KEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARR 390 (677)
Q Consensus 311 ~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 390 (677)
. |++++|+..|+++... .|+.......+..... ...+ ......+...+ +.|++++|..
T Consensus 145 ~-g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~----------------~~~~--~~~~~~~~~~~-~~~~~~~A~~ 202 (368)
T 1fch_A 145 E-SLQRQACEILRDWLRY--TPAYAHLVTPAEEGAG----------------GAGL--GPSKRILGSLL-SDSLFLEVKE 202 (368)
T ss_dssp T-TCHHHHHHHHHHHHHT--STTTGGGCC---------------------------------CTTHHHH-HHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhh----------------hhcc--cHHHHHHHHHh-hcccHHHHHH
Confidence 7 7777777777777764 2332221110000000 0000 11111223333 7899999999
Q ss_pred HHhcCCC--C---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037537 391 LFDRMPE--H---NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMF 465 (677)
Q Consensus 391 ~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 465 (677)
.|+++.+ | +..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.+.
T Consensus 203 ~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 280 (368)
T 1fch_A 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL- 280 (368)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9988753 3 46788999999999999999999999999853 445788999999999999999999999999875
Q ss_pred CCccChHHHHHHHHHHhhcCChHHHHHHHHhCCC-CCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 037537 466 GFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPF-NPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRR 544 (677)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 544 (677)
-+.+...+..+..+|.+.|++++|.+.++++.. .|+.. ....+..|....+|..++.+|...|++++|..+++
T Consensus 281 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 281 -QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR-----GPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-----CccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 223578899999999999999999999987620 00000 00001122337899999999999999999998876
Q ss_pred H
Q 037537 545 L 545 (677)
Q Consensus 545 ~ 545 (677)
+
T Consensus 355 ~ 355 (368)
T 1fch_A 355 R 355 (368)
T ss_dssp T
T ss_pred H
Confidence 3
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=6.7e-13 Score=149.34 Aligned_cols=381 Identities=12% Similarity=0.067 Sum_probs=255.6
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHhhccc-c-----ChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHH
Q 037537 33 SAYLSNHFILLYSKCGCLSAAHHAFNQTQH-A-----NVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAY 106 (677)
Q Consensus 33 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~ 106 (677)
++.-....+++|...|.+.+|.++++++.. + +....|.|+.+..+. +........+.... .....+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~---~d~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN---YDAPDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh---ccHHHHHHHH
Confidence 334445566666667777777777766664 1 224455555555555 33333333333322 1234455666
Q ss_pred HhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 037537 107 ADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRV 186 (677)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 186 (677)
...|.+++|..+|++... .....+.+ +-..|++++|.++
T Consensus 1060 i~lglyEEAf~IYkKa~~--------------------------------------~~~A~~VL---ie~i~nldrAiE~ 1098 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV--------------------------------------NTSAVQVL---IEHIGNLDRAYEF 1098 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC--------------------------------------HHHHHHHH---HHHHhhHHHHHHH
Confidence 677777777777776421 00011112 2266778888888
Q ss_pred HhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCch
Q 037537 187 FYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNS 266 (677)
Q Consensus 187 f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 266 (677)
.++. -+..+|..+..++.+.|++++|++.|.+. -|...|..++.+|.+.|+++++.+.+...++.. ++.
T Consensus 1099 Aerv---n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~ 1167 (1630)
T 1xi4_A 1099 AERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RES 1167 (1630)
T ss_pred HHhc---CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccc
Confidence 8876 23557888888888888888888888553 466677778888888888888888888777654 444
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhc
Q 037537 267 HIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSN 346 (677)
Q Consensus 267 ~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 346 (677)
.+.+.++..|++.++ +++..... ..++...|..+...|... |++++|..+|... ..|..+...+.+
T Consensus 1168 ~Idt~LafaYAKl~r-leele~fI---~~~n~ad~~~iGd~le~e-g~YeeA~~~Y~kA---------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1168 YVETELIFALAKTNR-LAELEEFI---NGPNNAHIQQVGDRCYDE-KMYDAAKLLYNNV---------SNFGRLASTLVH 1233 (1630)
T ss_pred cccHHHHHHHHhhcC-HHHHHHHH---hCCCHHHHHHHHHHHHhc-CCHHHHHHHHHhh---------hHHHHHHHHHHH
Confidence 455568888888777 77544332 345666677766777777 8888888888774 267777777777
Q ss_pred cC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 037537 347 LS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEW 425 (677)
Q Consensus 347 ~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 425 (677)
.| .+.|.+..... .+ ..+|..+..++...|++..|...... ...+...+..++.-|...|.+++|+.+++.
T Consensus 1234 Lge~q~AIEaarKA------~n-~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKA------NS-TRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred hCCHHHHHHHHHHh------CC-HHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77 77777776655 22 67778888888888999999888765 333455677899999999999999999988
Q ss_pred HHHCCCCCCHHHH--HHHHHHHhccCCHHHHHHHHHHhHHhcCCcc------ChHHHHHHHHHHhhcCChHHHHHHHH
Q 037537 426 MLETNIPPTNITF--VSVLSACAHTGKVAEGQKYFSMMKDMFGFEP------EGEHYSCMIDLLGRAGKLTDAERLIE 495 (677)
Q Consensus 426 m~~~g~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~ 495 (677)
.+... +-....| ...+.+-.+.+++.++.++|..-. .++| +...|.-++.+|.+.|+++.|...+-
T Consensus 1306 aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri---ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1306 ALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 87643 2223345 444444556677777777777543 4444 46789999999999999999985543
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=6.7e-14 Score=151.63 Aligned_cols=403 Identities=11% Similarity=0.092 Sum_probs=263.1
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHhccCCC--CCc
Q 037537 22 HALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLFDQIPQ--PDL 96 (677)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~ 96 (677)
++..++.. |-+...|..++.. .+.|+++.|+.+|+++.. .+...|..++..+.+.|++++|..+|++..+ |++
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~ 79 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI 79 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence 34455554 6677888888884 678999999999999887 3556788899999999999999999998765 776
Q ss_pred chHHHHHHHH-HhCCChhHHHH----HHHHhHhc-CCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHH
Q 037537 97 VSYNTLISAY-ADCGDTESALS----LFKDMREK-RFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSL 170 (677)
Q Consensus 97 ~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~l 170 (677)
..|...+... ...|+.++|.+ +|++.... |..|+. ..+|...
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~--------------------------------~~~w~~~ 127 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMS--------------------------------YQIWVDY 127 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTC--------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCccc--------------------------------HHHHHHH
Confidence 7777776533 35677777765 55554432 433332 2333343
Q ss_pred HHHHHh---------cCChhHHHHHHhhcCCCCCe---eeHHHHHHHH-------------HhCCCchHHHHHHHHHH--
Q 037537 171 LTCYSR---------NGFLDEAKRVFYEMGEIKDE---VSWNSMVVAY-------------GQHREGLEALQLFQEMV-- 223 (677)
Q Consensus 171 i~~~~~---------~g~~~~A~~~f~~m~~~~~~---~~~~~li~~~-------------~~~g~~~~A~~~~~~m~-- 223 (677)
+....+ .|+++.|+++|++.-..|+. ..|....... .+.+++.+|..++.++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~ 207 (530)
T 2ooe_A 128 INFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETV 207 (530)
T ss_dssp HHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 433332 56777888888776112321 2233222110 12345666776666532
Q ss_pred ----HCC---CCCCH--------hHHHHHHHHHcc----CCCh----HHHHHHHHHHHHhCCCCchhhHHHHHHHHHH--
Q 037537 224 ----SLQ---LGLDM--------YTLASILTAFTS----LEDL----VGGLQFHAHLIKSGFHQNSHIGSGLIDLYAK-- 278 (677)
Q Consensus 224 ----~~g---~~pd~--------~t~~~ll~a~~~----~~~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-- 278 (677)
+.. +.|+. ..|...+..... .++. +.+..+++++++.. +.+..+|..+...+.+
T Consensus 208 ~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~ 286 (530)
T 2ooe_A 208 MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSS 286 (530)
T ss_dssp HHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 111 23331 233333322211 1222 35667777777763 4567777777777765
Q ss_pred -----cCCCHH-------HHHHHHhhCCC---C-ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 037537 279 -----CSGDMR-------DCMKVFEEIPQ---P-DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVIS 342 (677)
Q Consensus 279 -----~g~~~~-------~A~~~f~~~~~---~-~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 342 (677)
.|+ ++ +|..+|++..+ | +...|..++..+.+. |++++|..+|+++.+. .|+..
T Consensus 287 ~~~~~~g~-~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~-g~~~~A~~~~~~al~~--~p~~~------- 355 (530)
T 2ooe_A 287 KLLAEKGD-MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR-MKYEKVHSIYNRLLAI--EDIDP------- 355 (530)
T ss_dssp HHHHTTTC-CHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHS--SSSCH-------
T ss_pred hhhhhccc-hhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc-CCHHHHHHHHHHHhCc--cccCc-------
Confidence 566 66 78888887652 3 466788888888888 8888888888888763 44421
Q ss_pred HhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcc---hHHHHH-HHHHHcCChHH
Q 037537 343 ACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTV---SLNSMI-AGYAQHGIGME 418 (677)
Q Consensus 343 a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~---~~~~li-~~~~~~g~~~~ 418 (677)
..+|..++..+.+.|++++|.++|++..+.+.. .|.... ..+...|+.++
T Consensus 356 --------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 356 --------------------------TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred --------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhH
Confidence 125566777777888889999998877552222 222211 12346899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC--hHHHHHHHHHHhhcCChHHHHHHHHh
Q 037537 419 ALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE--GEHYSCMIDLLGRAGKLTDAERLIEA 496 (677)
Q Consensus 419 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (677)
|..+|++.++.. +.+...+..++....+.|+.++|+.+|+.........|+ ...|...+....+.|+.+.+.++.++
T Consensus 410 A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 410 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988753 334778888888889999999999999999875333443 44788888888888999999988877
Q ss_pred C
Q 037537 497 M 497 (677)
Q Consensus 497 m 497 (677)
+
T Consensus 489 ~ 489 (530)
T 2ooe_A 489 R 489 (530)
T ss_dssp H
T ss_pred H
Confidence 6
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=9.6e-14 Score=150.41 Aligned_cols=396 Identities=9% Similarity=0.041 Sum_probs=233.0
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 037537 95 DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCY 174 (677)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~ 174 (677)
|..+|..++. +.+.|++++|..+|+++.+. . +.+...|..++..+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~--------------------------------P~~~~~w~~~~~~~ 56 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ--F--------------------------------PSSGRFWKLYIEAE 56 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--C--------------------------------TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--C--------------------------------CCCHHHHHHHHHHH
Confidence 4456666665 35566666666666666643 1 22334455555566
Q ss_pred HhcCChhHHHHHHhhc-CCCCCeeeHHHHHHHH-HhCCCchHHHH----HHHHHHHC-CCCCC-HhHHHHHHHHHcc---
Q 037537 175 SRNGFLDEAKRVFYEM-GEIKDEVSWNSMVVAY-GQHREGLEALQ----LFQEMVSL-QLGLD-MYTLASILTAFTS--- 243 (677)
Q Consensus 175 ~~~g~~~~A~~~f~~m-~~~~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-g~~pd-~~t~~~ll~a~~~--- 243 (677)
.+.|++++|.++|++. ...|++..|...+... ...|+.++|.+ +|++.... |..|+ ...|...+.....
T Consensus 57 ~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~ 136 (530)
T 2ooe_A 57 IKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA 136 (530)
T ss_dssp HHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC
T ss_pred HhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC
Confidence 6666666666666665 2234444455544322 23455555443 44444332 33332 3333333333222
Q ss_pred ------CCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH-------------HHcCCCHHHHHHHHhh-------CC---
Q 037537 244 ------LEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLY-------------AKCSGDMRDCMKVFEE-------IP--- 294 (677)
Q Consensus 244 ------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y-------------~~~g~~~~~A~~~f~~-------~~--- 294 (677)
.|+++.|..+|..+++........+|....... .+.+. ++.|..++.. +.
T Consensus 137 ~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~-~~~A~~~~~~~~~~~~~l~~~~ 215 (530)
T 2ooe_A 137 VGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRD-YMNARRVAKEYETVMKGLDRNA 215 (530)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHCCSSS
T ss_pred cccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHhcccc
Confidence 355566666666665521111112222211110 01123 5556555543 11
Q ss_pred ---CCC--------hhhHHHHHhhhcccC---CCH----HHHHHHHHHHhhcCCCCC-cchHHHHHHHhhc-------cC
Q 037537 295 ---QPD--------LVLWNTMISGYSQKE---EYS----DQALGCFKKLNRVGYHPD-DCSFVCVISACSN-------LS 348 (677)
Q Consensus 295 ---~~~--------~~~~~~li~~~~~~~---~~~----~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-------~~ 348 (677)
.|+ ...|...+.-...+. ++. ++++.+|++.... .|+ ...|......+.. .|
T Consensus 216 ~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 216 PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhcc
Confidence 111 245555553322110 222 3677788877764 343 3344444444433 45
Q ss_pred -hh-------HHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-Cc-chHHHHHHHHHHcCCh
Q 037537 349 -PS-------LGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NT-VSLNSMIAGYAQHGIG 416 (677)
Q Consensus 349 -~~-------~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~ 416 (677)
.+ .+..++...++. +.|+...++..++..+.+.|++++|..+|++..+ | +. ..|..++..+.+.|+.
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCH
Confidence 55 667777666652 2344488889999999999999999999988654 3 22 4788888888889999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHH
Q 037537 417 MEALRLFEWMLETNIPPT-NITFVSVLSA-CAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERL 493 (677)
Q Consensus 417 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 493 (677)
++|.++|++..+. .|+ ...|...... +...|+.++|..+|+...+. .| +...|..+++.+.+.|+.++|..+
T Consensus 373 ~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 373 KSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 9999999999874 333 3333332222 23588999999999988875 34 577888999999999999999999
Q ss_pred HHhCCCCCChHHHHHHHHHhccCCCCc----hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 494 IEAMPFNPGSIALKAANHFLQLEPSNA----VPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 494 ~~~m~~~~~~~~~~~~~~l~~l~p~~~----~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
|++.. +..|.++ ..|...+......|+.+.+.++.+++.+.
T Consensus 448 ~~~al---------------~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 448 FERVL---------------TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHH---------------HSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHH---------------hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 98762 3333333 37878888888899999999999888763
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=5.8e-17 Score=176.47 Aligned_cols=148 Identities=10% Similarity=0.096 Sum_probs=124.0
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHhhc------CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHH
Q 037537 163 YASVNNSLLTCYSRNGFLDEAKRVFYEM------GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLAS 236 (677)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~A~~~f~~m------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 236 (677)
-..+||+||++|+++|++++|.++|++| +..||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3457999999999999999999999876 5689999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCh-HHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC-----CChhhHHHHHhhhcc
Q 037537 237 ILTAFTSLEDL-VGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ-----PDLVLWNTMISGYSQ 310 (677)
Q Consensus 237 ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~ 310 (677)
+|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+- ++...+++.++.. +.+.+.+.|...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~v-L~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV-LKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHH-HHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHH-HHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 99999999985 7899999999999999999999999988777544 5555444444431 123344445555665
Q ss_pred c
Q 037537 311 K 311 (677)
Q Consensus 311 ~ 311 (677)
.
T Consensus 285 d 285 (1134)
T 3spa_A 285 D 285 (1134)
T ss_dssp C
T ss_pred C
Confidence 4
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.65 E-value=1.2e-13 Score=147.92 Aligned_cols=346 Identities=14% Similarity=0.087 Sum_probs=241.9
Q ss_pred cChhHHHHHHHHHHh----cCChhHHHHHhccCCC-CCcchHHHHHHHHHh----CCChhHHHHHHHHhHhcCCCCCccc
Q 037537 63 ANVFSFNVLLAAYAR----QLRIASARQLFDQIPQ-PDLVSYNTLISAYAD----CGDTESALSLFKDMREKRFDTDGFT 133 (677)
Q Consensus 63 ~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 133 (677)
.++.....|...|.. .++++.|...|+...+ .+..++..|...|.. .+++++|++.|++..+.|
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG------- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------
Confidence 455666666666666 6777777777765443 355666667777776 777777777777766543
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhHHHHHHhhcCCCCCeeeHHHHHHHHHh-
Q 037537 134 LSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSR----NGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQ- 208 (677)
Q Consensus 134 ~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~- 208 (677)
++..+..|-.+|.. .+++++|.+.|++.-...+...+..|...|..
T Consensus 110 -----------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g 160 (490)
T 2xm6_A 110 -----------------------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEG 160 (490)
T ss_dssp -----------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence 12222344455555 56777777777776112245556666666766
Q ss_pred ---CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHcc----CCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHH---
Q 037537 209 ---HREGLEALQLFQEMVSLQLGLDMYTLASILTAFTS----LEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAK--- 278 (677)
Q Consensus 209 ---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--- 278 (677)
.+++++|++.|++..+.| +...+..+-..+.. .++.+.|.+.+....+.| +......|..+|..
T Consensus 161 ~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g 234 (490)
T 2xm6_A 161 DGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIG 234 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 677888888888777754 45566666666655 677888888888777764 45566677777775
Q ss_pred -cCCCHHHHHHHHhhCCC-CChhhHHHHHhhhcc----cCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHH
Q 037537 279 -CSGDMRDCMKVFEEIPQ-PDLVLWNTMISGYSQ----KEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLG 352 (677)
Q Consensus 279 -~g~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 352 (677)
.++ .++|...|++..+ .+...+..+-..|.. . +++++|+..|++..+.|.
T Consensus 235 ~~~~-~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~-~d~~~A~~~~~~a~~~~~---------------------- 290 (490)
T 2xm6_A 235 VTQD-YTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGA-KEPLKALEWYRKSAEQGN---------------------- 290 (490)
T ss_dssp SCCC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSS-CCHHHHHHHHHHHHTTTC----------------------
T ss_pred CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHcCC----------------------
Confidence 456 8888888877543 444555555555554 5 778888888888765431
Q ss_pred HHHHHHHHHhhcccCccchhHHHHHHHHcc-----CCHHHHHHHHhcCCC-CCcchHHHHHHHHHHcC---ChHHHHHHH
Q 037537 353 KQIHALTIKIEIRSNRISVNNALVAMYSKC-----GNLEDARRLFDRMPE-HNTVSLNSMIAGYAQHG---IGMEALRLF 423 (677)
Q Consensus 353 ~~i~~~~~~~~~~~~~~~~~~~li~~y~k~-----g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g---~~~~A~~l~ 423 (677)
+..+..|..+|... ++.++|...|++..+ .+...+..+...|...| +.++|++.|
T Consensus 291 ----------------~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~ 354 (490)
T 2xm6_A 291 ----------------SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWF 354 (490)
T ss_dssp ----------------HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 33445666677766 889999999887654 45667888888888766 788999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhh----cCChHHHHHHHH
Q 037537 424 EWMLETNIPPTNITFVSVLSACAH----TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGR----AGKLTDAERLIE 495 (677)
Q Consensus 424 ~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~ 495 (677)
++..+.| +...+..+-..+.. .++.++|...|+...+. + +...+..|..+|.+ .+++++|.+.|+
T Consensus 355 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 355 RKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998864 56677777777777 78999999999998875 3 46677888888887 899999999998
Q ss_pred hC
Q 037537 496 AM 497 (677)
Q Consensus 496 ~m 497 (677)
+.
T Consensus 428 ~A 429 (490)
T 2xm6_A 428 TA 429 (490)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.65 E-value=9.9e-15 Score=150.08 Aligned_cols=282 Identities=14% Similarity=0.083 Sum_probs=218.5
Q ss_pred HHhcCChhHHHH-HHhhc----C--CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCC
Q 037537 174 YSRNGFLDEAKR-VFYEM----G--EIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLED 246 (677)
Q Consensus 174 ~~~~g~~~~A~~-~f~~m----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 246 (677)
|.-.|++++|.. .|++. + +..+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 444578888988 88865 1 11246779999999999999999999999999864 2367788889999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--C-ChhhHHH---------------HHhhh
Q 037537 247 LVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--P-DLVLWNT---------------MISGY 308 (677)
Q Consensus 247 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~-~~~~~~~---------------li~~~ 308 (677)
++.|...+..+++.. +.+..++..+...|...|+ .++|.+.|+++.. | +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESL-QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999999886 5578899999999999999 9999999998752 2 2222221 13333
Q ss_pred cccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHH
Q 037537 309 SQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDA 388 (677)
Q Consensus 309 ~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 388 (677)
... |++++|+..|+++... .|+.. + ..++..+...|.+.|++++|
T Consensus 192 ~~~-~~~~~A~~~~~~a~~~--~p~~~-------------------------------~-~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 192 LSD-SLFLEVKELFLAAVRL--DPTSI-------------------------------D-PDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp HHH-HHHHHHHHHHHHHHHH--STTSC-------------------------------C-HHHHHHHHHHHHHTTCHHHH
T ss_pred hhc-ccHHHHHHHHHHHHHh--CcCcc-------------------------------c-HHHHHHHHHHHHHcCCHHHH
Confidence 355 7788888888877764 23310 1 56678889999999999999
Q ss_pred HHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037537 389 RRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMF 465 (677)
Q Consensus 389 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 465 (677)
...|++..+ .+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.+.
T Consensus 237 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 314 (368)
T 1fch_A 237 VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM- 314 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 999998753 356789999999999999999999999999853 445788999999999999999999999999865
Q ss_pred CCccC------------hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 466 GFEPE------------GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 466 ~~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.|+ ...|..+..+|.+.|+.++|..++++.
T Consensus 315 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 315 --QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp --HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred --CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 332 578999999999999999999998754
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.63 E-value=9.8e-13 Score=140.94 Aligned_cols=352 Identities=12% Similarity=0.047 Sum_probs=273.3
Q ss_pred CCcchHHHHHHHHHh----CCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHH
Q 037537 94 PDLVSYNTLISAYAD----CGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNS 169 (677)
Q Consensus 94 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~ 169 (677)
.|..++..+...|.. .+++++|+..|++..+.| ++..+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------------------------------------~~~a~~~ 80 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG------------------------------------YTPAEYV 80 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------------------------CHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC------------------------------------CHHHHHH
Confidence 466777777777877 889999999998887653 2233355
Q ss_pred HHHHHHh----cCChhHHHHHHhhcCCCCCeeeHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 037537 170 LLTCYSR----NGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQ----HREGLEALQLFQEMVSLQLGLDMYTLASILTAF 241 (677)
Q Consensus 170 li~~~~~----~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 241 (677)
|-.+|.. .++.++|.+.|++.-...+...+..|...|.. .+++++|+..|++..+.| +...+..+-..+
T Consensus 81 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 157 (490)
T 2xm6_A 81 LGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAY 157 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 6667777 88999999999987222356677888888887 789999999999998865 455666666666
Q ss_pred cc----CCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHH----cCCCHHHHHHHHhhCCC-CChhhHHHHHhhhcc--
Q 037537 242 TS----LEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAK----CSGDMRDCMKVFEEIPQ-PDLVLWNTMISGYSQ-- 310 (677)
Q Consensus 242 ~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~-- 310 (677)
.. .++.+.|.+.+....+.| +...+..|..+|.. .++ .++|.+.|++..+ .+..++..+...|..
T Consensus 158 ~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~ 233 (490)
T 2xm6_A 158 FEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN-DAISAQWYRKSATSGDELGQLHLADMYYFGI 233 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 55 788999999999988875 56778888888887 667 8899988887653 455666666666664
Q ss_pred --cCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHc----cCC
Q 037537 311 --KEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSK----CGN 384 (677)
Q Consensus 311 --~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k----~g~ 384 (677)
. +++++|..+|++..+.|. +..+..|..+|.. .++
T Consensus 234 g~~-~~~~~A~~~~~~a~~~~~--------------------------------------~~a~~~lg~~y~~g~~~~~d 274 (490)
T 2xm6_A 234 GVT-QDYTQSRVLFSQSAEQGN--------------------------------------SIAQFRLGYILEQGLAGAKE 274 (490)
T ss_dssp SSC-CCHHHHHHHHHHHHTTTC--------------------------------------HHHHHHHHHHHHHTTTSSCC
T ss_pred CCC-CCHHHHHHHHHHHHHCCC--------------------------------------HHHHHHHHHHHHCCCCCCCC
Confidence 5 778888888888776431 3344556666666 799
Q ss_pred HHHHHHHHhcCCC-CCcchHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHH
Q 037537 385 LEDARRLFDRMPE-HNTVSLNSMIAGYAQH-----GIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG---KVAEGQ 455 (677)
Q Consensus 385 ~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~ 455 (677)
.++|...|++..+ .+...+..+...|... ++.++|+..|++..+.| +...+..+...+...| +.++|.
T Consensus 275 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 275 PLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 9999999998765 4666788888888887 89999999999999875 4456666666666656 889999
Q ss_pred HHHHHhHHhcCCccChHHHHHHHHHHhh----cCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 037537 456 KYFSMMKDMFGFEPEGEHYSCMIDLLGR----AGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYA 531 (677)
Q Consensus 456 ~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~ 531 (677)
++|+...+. .+...+..|..+|.. .+++++|.+.+++... ..++.++..|..+|.
T Consensus 352 ~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~-----------------~~~~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 352 EWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE-----------------QGLSAAQVQLGEIYY 410 (490)
T ss_dssp HHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh-----------------CCCHHHHHHHHHHHH
Confidence 999999875 357788888888888 8999999999987631 135678999999999
Q ss_pred h----cCChHHHHHHHHHHHhCCC
Q 037537 532 A----SGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 532 ~----~g~~~~a~~~~~~m~~~g~ 551 (677)
. .+++++|...+++..+.|.
T Consensus 411 ~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 411 YGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8 8999999999999988774
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=2.3e-14 Score=152.83 Aligned_cols=356 Identities=13% Similarity=0.016 Sum_probs=186.3
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHhhc----------C-CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCC------
Q 037537 164 ASVNNSLLTCYSRNGFLDEAKRVFYEM----------G-EIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQ------ 226 (677)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~f~~m----------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------ 226 (677)
...||.|-..|...|+.++|.+.|++. . .....++|+.+...|...|++++|+..|++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345566666777777777777766553 0 11234566777777777777777777766654310
Q ss_pred CCC-CHhHHHHHHHHHc--cCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHH---HcCCCHHHHHHHHhhCC---CCC
Q 037537 227 LGL-DMYTLASILTAFT--SLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYA---KCSGDMRDCMKVFEEIP---QPD 297 (677)
Q Consensus 227 ~~p-d~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~---~~g~~~~~A~~~f~~~~---~~~ 297 (677)
..+ ...++.....++. ..+++++|...|..+++.. +.+...+..+...+. ..++ .++|.+.|++.. ..+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~-~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPP-SQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCC-CCCTHHHHHHHHHHCSSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhcCCcc
Confidence 111 1233333322222 2345566666666665543 222333333333322 2233 334444443322 122
Q ss_pred hhhHHHHHhhh----cccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhH
Q 037537 298 LVLWNTMISGY----SQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNN 373 (677)
Q Consensus 298 ~~~~~~li~~~----~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 373 (677)
...+..+...+ ... ++.++|.+++++.... .|+...++.
T Consensus 209 ~~~~~~l~~~~~~~~~~~-~~~~~a~~~~~~al~~------------------------------------~~~~~~~~~ 251 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEG-EEEGEGEKLVEEALEK------------------------------------APGVTDVLR 251 (472)
T ss_dssp HHHHHHHHHHHHHCC-------CHHHHHHHHHHHH------------------------------------CSSCHHHHH
T ss_pred hHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHh------------------------------------CccHHHHHH
Confidence 22332222211 112 3444555555444432 222255667
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCC
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQ-------------------HGIGMEALRLFEWMLETNI 431 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~ 431 (677)
.+...|.+.|++++|...|++..+ | +..+|..+...|.. .+..++|+..|++..+..
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 330 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN- 330 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-
Confidence 777777888888888877776653 2 33455555554432 223567777788777643
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccCh--HHHHHHHH-HHhhcCChHHHHHHHHhC-CCCCChHH--
Q 037537 432 PPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG--EHYSCMID-LLGRAGKLTDAERLIEAM-PFNPGSIA-- 505 (677)
Q Consensus 432 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m-~~~~~~~~-- 505 (677)
+.+..++..+...+...|++++|...|+...+. ...|.. ..+..+.. .+.+.|+.++|.+.+++. ...|+...
T Consensus 331 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~ 409 (472)
T 4g1t_A 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE 409 (472)
T ss_dssp TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH
Confidence 334567777888888888888888888888764 322221 12223322 234678888888888764 33444333
Q ss_pred ------HHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEE
Q 037537 506 ------LKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWI 560 (677)
Q Consensus 506 ------~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 560 (677)
....++.++.+|+++.+|..|+.+|...|++++|++.+++..+.|-..+...+|+
T Consensus 410 ~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 410 KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 4556677889999999999999999999999999999999988775544445554
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.63 E-value=9.5e-15 Score=150.19 Aligned_cols=268 Identities=9% Similarity=-0.007 Sum_probs=187.1
Q ss_pred CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 037537 195 DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLID 274 (677)
Q Consensus 195 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 274 (677)
+...|..+...+.+.|++++|+++|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------------------------p~~~~~~~~lg~ 107 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD------------------------------------PGDAEAWQFLGI 107 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------cCCHHHHHHHHH
Confidence 45557777777777777777777777776532 223334444555
Q ss_pred HHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhH
Q 037537 275 LYAKCSGDMRDCMKVFEEIP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSL 351 (677)
Q Consensus 275 ~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 351 (677)
.|.+.|+ +++|...|++.. ..+..+|..+...|... |++++|+..|+++.+. .|+.......+.
T Consensus 108 ~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~~~~--------- 174 (365)
T 4eqf_A 108 TQAENEN-EQAAIVALQRCLELQPNNLKALMALAVSYTNT-SHQQDACEALKNWIKQ--NPKYKYLVKNKK--------- 174 (365)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CHHHHCC--------------
T ss_pred HHHHCCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHh--CccchHHHhhhc---------
Confidence 5555555 555555555443 23456677777777777 8888888888888763 232211100000
Q ss_pred HHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C---CcchHHHHHHHHHHcCChHHHHHHHHHH
Q 037537 352 GKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H---NTVSLNSMIAGYAQHGIGMEALRLFEWM 426 (677)
Q Consensus 352 ~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m 426 (677)
.. ...+..+...|.+.|++++|...|+++.+ | +..+|..+...|...|++++|++.|+++
T Consensus 175 --------------~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 239 (365)
T 4eqf_A 175 --------------GS-PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239 (365)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred --------------cc-hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 00 34456678889999999999999998764 3 5678999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHH
Q 037537 427 LETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIA 505 (677)
Q Consensus 427 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 505 (677)
.+.. +.+..++..+..++...|++++|...|+.+.+. .| +...+..+..+|.+.|++++|.+.++++.
T Consensus 240 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------- 308 (365)
T 4eqf_A 240 LTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI---QPGFIRSRYNLGISCINLGAYREAVSNFLTAL------- 308 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH-------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH-------
Confidence 9853 455789999999999999999999999999875 45 47889999999999999999999998762
Q ss_pred HHHHHHHhccCCC------------CchhHHHHHHHHHhcCChHHHHHHHHH
Q 037537 506 LKAANHFLQLEPS------------NAVPYVMLANIYAASGKWEEVATIRRL 545 (677)
Q Consensus 506 ~~~~~~l~~l~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~ 545 (677)
++.|+ +...|..|..+|...|+.+.+.++.++
T Consensus 309 --------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 309 --------SLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp --------HHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred --------HhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 22222 467899999999999999998877654
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.61 E-value=3.2e-14 Score=146.26 Aligned_cols=271 Identities=12% Similarity=0.068 Sum_probs=206.6
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 037537 163 YASVNNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTA 240 (677)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 240 (677)
+...+..+...|.+.|++++|.+.|+++ ..+.+..+|..+...|.+.|++++|++.|+++.+.. +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445888889999999999999999998 223467789999999999999999999999998753 2346777778888
Q ss_pred HccCCChHHHHHHHHHHHHhCCCCch-hhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHH
Q 037537 241 FTSLEDLVGGLQFHAHLIKSGFHQNS-HIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQAL 319 (677)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~ 319 (677)
+...|++++|...+..+++.. |+. ..+..+. .....+..+...+.+. |++++|+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~----------------------~~~~~~~~l~~~~~~~-g~~~~A~ 197 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK----------------------GSPGLTRRMSKSPVDS-SVLEGVK 197 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-----------------------------------------CC-HHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc----------------------cchHHHHHHHHHHhhh-hhHHHHH
Confidence 888888888888888777653 111 0110000 1123344556777778 9999999
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--
Q 037537 320 GCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-- 397 (677)
Q Consensus 320 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-- 397 (677)
..|+++... .|+.. + +.++..+...|.+.|++++|...|++..+
T Consensus 198 ~~~~~al~~--~p~~~-------------------------------~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 243 (365)
T 4eqf_A 198 ELYLEAAHQ--NGDMI-------------------------------D-PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR 243 (365)
T ss_dssp HHHHHHHHH--SCSSC-------------------------------C-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHh--CcCcc-------------------------------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999875 34310 1 55678888999999999999999998754
Q ss_pred -CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC------
Q 037537 398 -HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE------ 470 (677)
Q Consensus 398 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------ 470 (677)
.+..+|+.+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.+. .|+
T Consensus 244 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~ 319 (365)
T 4eqf_A 244 PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL---QRKSRNQQQ 319 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---HHCC-----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccCCCcc
Confidence 467789999999999999999999999999853 344788999999999999999999999999865 232
Q ss_pred -------hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 471 -------GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 471 -------~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
...|..+..++...|+.+.|.+..++-
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 320 VPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp -------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 678999999999999999999998764
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.60 E-value=1.3e-13 Score=138.97 Aligned_cols=258 Identities=12% Similarity=0.015 Sum_probs=181.0
Q ss_pred eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 037537 196 EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDL 275 (677)
Q Consensus 196 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 275 (677)
...|..+...+...|++++|+.+|+++.+... .+..++..+..++...|+++.|.+.+..+.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 34455555556666666666666666555321 234455555555556666666666666655543 3344555566666
Q ss_pred HHHcCCCHHHHHHHHhhCCC--C-ChhhHHHH--------------Hh-hhcccCCCHHHHHHHHHHHhhcCCCCCcchH
Q 037537 276 YAKCSGDMRDCMKVFEEIPQ--P-DLVLWNTM--------------IS-GYSQKEEYSDQALGCFKKLNRVGYHPDDCSF 337 (677)
Q Consensus 276 y~~~g~~~~~A~~~f~~~~~--~-~~~~~~~l--------------i~-~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~ 337 (677)
|...|+ .++|.+.|+++.. | +...+..+ .. .+... |++++|...++++.+.. |+.
T Consensus 99 ~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~--~~~--- 171 (327)
T 3cv0_A 99 HTNEHN-ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP-NEYRECRTLLHAALEMN--PND--- 171 (327)
T ss_dssp HHHTTC-HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSH-HHHHHHHHHHHHHHHHS--TTC---
T ss_pred HHHcCC-HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHc-ccHHHHHHHHHHHHhhC--CCC---
Confidence 666666 6666666655431 1 12222222 22 35666 88888888888887642 321
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcC
Q 037537 338 VCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHG 414 (677)
Q Consensus 338 ~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 414 (677)
..++..+...|.+.|++++|...|++..+ .+..+|..+...|...|
T Consensus 172 -------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 172 -------------------------------AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred -------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 56678888999999999999999998753 45678999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-------------hHHHHHHHHHH
Q 037537 415 IGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-------------GEHYSCMIDLL 481 (677)
Q Consensus 415 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------------~~~~~~li~~~ 481 (677)
++++|+..|+++.+.. +.+..++..+...+...|++++|.+.++.+.+. .|+ ...|..+..+|
T Consensus 221 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (327)
T 3cv0_A 221 RPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLL 296 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHH
Confidence 9999999999998853 445788999999999999999999999999875 343 67888999999
Q ss_pred hhcCChHHHHHHHHhC
Q 037537 482 GRAGKLTDAERLIEAM 497 (677)
Q Consensus 482 ~~~g~~~~A~~~~~~m 497 (677)
.+.|+.++|.+++++.
T Consensus 297 ~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 297 NVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHTTCHHHHHHHTTCC
T ss_pred HhcCCHHHHHHHHHHH
Confidence 9999999999999865
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.58 E-value=5.7e-14 Score=141.59 Aligned_cols=272 Identities=10% Similarity=0.009 Sum_probs=212.4
Q ss_pred CHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHh
Q 037537 230 DMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTMIS 306 (677)
Q Consensus 230 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~ 306 (677)
+...+......+...|++++|..++..+++.. +.+...+..+...|.+.|+ +++|...|+++. ..+...|..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEK-DGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 34456677778889999999999999999875 4577788889999999999 999999999875 346678888899
Q ss_pred hhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHH-HHhhccChhHHHHHHHHHHHhhcccCccchhHHH-HH-HHHccC
Q 037537 307 GYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVI-SACSNLSPSLGKQIHALTIKIEIRSNRISVNNAL-VA-MYSKCG 383 (677)
Q Consensus 307 ~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l-i~-~y~k~g 383 (677)
.|... |++++|++.|+++... .|+.......+ ..+ ++ ......+ .. .+...|
T Consensus 98 ~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~---------------------~~-~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 98 SHTNE-HNANAALASLRAWLLS--QPQYEQLGSVNLQAD---------------------VD-IDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHT--STTTTTC------------------------------------------CCTTSHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHh--CCccHHHHHHHhHHH---------------------HH-HHHHHHHHHhHHHHHcc
Confidence 99999 9999999999999875 34332221111 000 00 0011122 22 366788
Q ss_pred CHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037537 384 NLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSM 460 (677)
Q Consensus 384 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 460 (677)
++++|...|+++.+ .+...|..+...|...|++++|++.++++.+.. +.+..++..+...+...|++++|...++.
T Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999988753 366789999999999999999999999999864 44578899999999999999999999999
Q ss_pred hHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCC------------CchhHHHHHH
Q 037537 461 MKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPS------------NAVPYVMLAN 528 (677)
Q Consensus 461 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~------------~~~~~~~l~~ 528 (677)
+.+. .+.+...+..+...|.+.|++++|.+.++++ +++.|. ++..|..+..
T Consensus 232 a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (327)
T 3cv0_A 232 ALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA---------------IYMQVGGTTPTGEASREATRSMWDFFRM 294 (327)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHTTSCC-----CCTHHHHHHHHHHH
T ss_pred HHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH---------------HHhCCccccccccchhhcCHHHHHHHHH
Confidence 9875 2335778999999999999999999999876 344455 5788999999
Q ss_pred HHHhcCChHHHHHHHHHH
Q 037537 529 IYAASGKWEEVATIRRLM 546 (677)
Q Consensus 529 ~y~~~g~~~~a~~~~~~m 546 (677)
+|...|++++|..++++.
T Consensus 295 ~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 295 LLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHTTCHHHHHHHTTCC
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 999999999999988643
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.57 E-value=4.8e-13 Score=132.26 Aligned_cols=274 Identities=13% Similarity=0.078 Sum_probs=210.2
Q ss_pred HHHHhcCChhHHHHHHhhc-CCCCC--eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChH
Q 037537 172 TCYSRNGFLDEAKRVFYEM-GEIKD--EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLV 248 (677)
Q Consensus 172 ~~~~~~g~~~~A~~~f~~m-~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 248 (677)
+-....|++..|...++.. ...|+ ....-.+.++|...|++++|+..++.. -.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 3345679999999999886 22232 234566789999999999999877542 3467788888888999999999
Q ss_pred HHHHHHHHHHHhCCCC-chhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhh
Q 037537 249 GGLQFHAHLIKSGFHQ-NSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNR 327 (677)
Q Consensus 249 ~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~ 327 (677)
.|.+.++.++..+..| +..++..+...|...|+ +++|.+.|++ ..+...+..+...|.+. |++++|.+.|+++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~-~~~Al~~l~~--~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN-PDAALRTLHQ--GDSLECMAMTVQILLKL-DRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC-HHHHHHHHTT--CCSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC-HHHHHHHHhC--CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHh
Confidence 9999999999887544 55667777789999999 9999999999 56778899999999999 999999999999988
Q ss_pred cCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHH
Q 037537 328 VGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLN 404 (677)
Q Consensus 328 ~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~ 404 (677)
. .|+.. . .....+++..+...|++++|..+|+++.+ .++..|+
T Consensus 159 ~--~p~~~-~-------------------------------~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~ 204 (291)
T 3mkr_A 159 Q--DEDAT-L-------------------------------TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN 204 (291)
T ss_dssp H--CTTCH-H-------------------------------HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred h--CcCcH-H-------------------------------HHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 6 36642 1 11223444555567889999999988754 4667888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHhHHhcCCccChHHHHHHHHHHhh
Q 037537 405 SMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAE-GQKYFSMMKDMFGFEPEGEHYSCMIDLLGR 483 (677)
Q Consensus 405 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~-a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 483 (677)
.+..++.+.|++++|.+.|++.++.. +-+..++..++..+...|+.++ +.++++.+.+. .|+... +.+...+
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~---~P~~~~---~~d~~~~ 277 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA---HRSHPF---IKEYRAK 277 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CTTCHH---HHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---CCCChH---HHHHHHH
Confidence 89999999999999999999988853 3457788888888888888865 57888888764 565332 3455666
Q ss_pred cCChHHHHHHH
Q 037537 484 AGKLTDAERLI 494 (677)
Q Consensus 484 ~g~~~~A~~~~ 494 (677)
.+.+++|..-|
T Consensus 278 ~~~fd~~~~~~ 288 (291)
T 3mkr_A 278 ENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 67777666544
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=1.4e-12 Score=139.01 Aligned_cols=267 Identities=14% Similarity=0.092 Sum_probs=141.8
Q ss_pred CChhHHHHHHhhc-CCCCC-eeeHHHHHHH---HHhCCCchHHHHHHHHHHHCCCCC-CHhHHHHHHHHHc----cCCCh
Q 037537 178 GFLDEAKRVFYEM-GEIKD-EVSWNSMVVA---YGQHREGLEALQLFQEMVSLQLGL-DMYTLASILTAFT----SLEDL 247 (677)
Q Consensus 178 g~~~~A~~~f~~m-~~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~----~~~~~ 247 (677)
+++++|...|++. ...|+ ...+..+... +...++.++|++.|++..+. .| +..++..+...+. ..++.
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~ 229 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEE 229 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHH
Confidence 3456666666655 22232 2233333322 23445566666666665553 23 2333333333322 23455
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--C-ChhhHHHHHhhhccc-------------
Q 037537 248 VGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--P-DLVLWNTMISGYSQK------------- 311 (677)
Q Consensus 248 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~------------- 311 (677)
+.|.+.+....+.. +.+..++..+...|.+.|+ .++|...|++..+ | +..+|..+...|...
T Consensus 230 ~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~ 307 (472)
T 4g1t_A 230 GEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDE-PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMY 307 (472)
T ss_dssp CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 66666666665554 3445556666666666666 6666666665542 2 233344433333211
Q ss_pred -----CCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHH
Q 037537 312 -----EEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLE 386 (677)
Q Consensus 312 -----~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 386 (677)
.+..++|+..|++..+ ..|+....+..+...|.+.|+++
T Consensus 308 ~~~~~~~~~~~A~~~~~~a~~------------------------------------~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 308 GKRKLLELIGHAVAHLKKADE------------------------------------ANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH------------------------------------HCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHHHHHHHHHHhh------------------------------------cCCchhhhhhhHHHHHHHhccHH
Confidence 0112233333333322 22333677888999999999999
Q ss_pred HHHHHHhcCCC--CCcc----hHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037537 387 DARRLFDRMPE--HNTV----SLNSMIA-GYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFS 459 (677)
Q Consensus 387 ~A~~~~~~~~~--~~~~----~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 459 (677)
+|...|++..+ ++.. .+..+.. .+.+.|+.++|+..|++.++ +.|+...... ..+.+.++++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~~~~ 420 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQKIAK 420 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHHHHH
Confidence 99999987643 2222 1222222 23467899999999999998 5676543322 2334455566
Q ss_pred HhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 460 MMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 460 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
...+. -+.+...|..+..+|...|++++|.+.|++.
T Consensus 421 ~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 421 MRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHH--CC-CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55543 2346789999999999999999999999987
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.48 E-value=7e-13 Score=125.07 Aligned_cols=193 Identities=17% Similarity=0.059 Sum_probs=142.9
Q ss_pred ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHH
Q 037537 297 DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALV 376 (677)
Q Consensus 297 ~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li 376 (677)
+...|..+...+.+. |++++|+..|++..+. .|+. +..+..+.
T Consensus 4 ~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~--~p~~----------------------------------~~a~~~lg 46 (217)
T 2pl2_A 4 AEQNPLRLGVQLYAL-GRYDAALTLFERALKE--NPQD----------------------------------PEALYWLA 46 (217)
T ss_dssp CCHHHHHHHHHHHHT-TCHHHHHHHHHHHHTT--SSSC----------------------------------HHHHHHHH
T ss_pred cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCC----------------------------------HHHHHHHH
Confidence 445566666666666 7777777777776652 3432 55566677
Q ss_pred HHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHc-----------CChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 037537 377 AMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQH-----------GIGMEALRLFEWMLETNIPPT-NITFVSV 441 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 441 (677)
..|.+.|++++|...|++..+ | +...|..+...|... |++++|+..|++.++. .|+ ...+..+
T Consensus 47 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~l 124 (217)
T 2pl2_A 47 RTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQR 124 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 777777777777777776543 2 455677777778877 9999999999999985 454 6788888
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCch
Q 037537 442 LSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAV 521 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~ 521 (677)
...+...|++++|...|+...+. . .+...+..+..+|...|++++|...+++. ++++|+++.
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------l~~~P~~~~ 186 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKA---------------LEQAPKDLD 186 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------HHHSTTCHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCChH
Confidence 88999999999999999999987 5 77888999999999999999999999876 578899999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 037537 522 PYVMLANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 522 ~~~~l~~~y~~~g~~~~a~~~~~~m 546 (677)
.+..+..+|...|++++|...+++.
T Consensus 187 ~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 187 LRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999888764
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=7.9e-12 Score=122.24 Aligned_cols=213 Identities=12% Similarity=0.048 Sum_probs=148.2
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhhCCC--CC----hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 037537 268 IGSGLIDLYAKCSGDMRDCMKVFEEIPQ--PD----LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVI 341 (677)
Q Consensus 268 ~~~~li~~y~~~g~~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll 341 (677)
++..+...|...|+ +++|...|++..+ ++ ..+|..+...|... |++++|+..|++..+. .|+.
T Consensus 39 ~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~a~~~--~~~~------- 107 (272)
T 3u4t_A 39 IYNRRAVCYYELAK-YDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK-GQDSLAIQQYQAAVDR--DTTR------- 107 (272)
T ss_dssp THHHHHHHHHHTTC-HHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--STTC-------
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhc--Cccc-------
Confidence 34444444444444 5555554444322 11 12366666677777 8888888888887763 2332
Q ss_pred HHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHH
Q 037537 342 SACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGME 418 (677)
Q Consensus 342 ~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 418 (677)
..++..+...|.+.|++++|...|++..+ .+...|..+...+...+++++
T Consensus 108 ---------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 108 ---------------------------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp ---------------------------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 56678888999999999999999998876 345567777734445569999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHhHHhcCCccC------hHHHHHHHHHHhhcCChHH
Q 037537 419 ALRLFEWMLETNIPPTNITFVSVLSACAHTGK---VAEGQKYFSMMKDMFGFEPE------GEHYSCMIDLLGRAGKLTD 489 (677)
Q Consensus 419 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~~ 489 (677)
|++.|+++.+.. +.+...+..+...+...|+ .++|...++.+.+...-.|+ ...|..+...|.+.|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999853 3346777778888888887 88899999888876433354 2578889999999999999
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 037537 490 AERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASG 534 (677)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g 534 (677)
|.+.+++. ++++|+++.++..+.......+
T Consensus 240 A~~~~~~a---------------l~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNI---------------LALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHH---------------HHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHH---------------HhcCccHHHHHHHhhhhhcccc
Confidence 99999877 5788888888777766655443
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.4e-11 Score=119.21 Aligned_cols=228 Identities=11% Similarity=0.084 Sum_probs=176.7
Q ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcC--CCCCcchHHHHH
Q 037537 266 SHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVG--YHPDDCSFVCVI 341 (677)
Q Consensus 266 ~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g--~~p~~~t~~~ll 341 (677)
...+..+...|...|+ +++|...|++..+ .+...|..+...|... |++++|+..|.+..+.. ..|+....
T Consensus 5 a~~~~~~g~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~---- 78 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQ-FDEAIEHYNKAWELHKDITYLNNRAAAEYEK-GEYETAISTLNDAVEQGREMRADYKVI---- 78 (258)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSCCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHH----
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcccccchHHH----
Confidence 3456667777777777 7777777766431 5566777777777777 77777777777766531 11111100
Q ss_pred HHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHH
Q 037537 342 SACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALR 421 (677)
Q Consensus 342 ~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 421 (677)
..++..+...|.+.|++++|...|++..+.+.. ...+...|++++|+.
T Consensus 79 ---------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 79 ---------------------------SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELK 126 (258)
T ss_dssp ---------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHH
Confidence 456788899999999999999999987652221 345777889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 037537 422 LFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNP 501 (677)
Q Consensus 422 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 501 (677)
.++++.... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++.
T Consensus 127 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---- 199 (258)
T 3uq3_A 127 KAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKA---- 199 (258)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH----
Confidence 999999853 333567888888999999999999999999875 2335788999999999999999999999876
Q ss_pred ChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 502 GSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 502 ~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+++.|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 200 -----------l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 200 -----------IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp -----------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4678889999999999999999999999999998764
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.37 E-value=4.5e-11 Score=126.15 Aligned_cols=368 Identities=12% Similarity=0.092 Sum_probs=184.7
Q ss_pred HHHHHHccCChHHHHHHHhhccc-cChhHHHHHHHHHHhcCCh---hHHHHHhccCCCCCcchHHHHHHHHHhCC-----
Q 037537 40 FILLYSKCGCLSAAHHAFNQTQH-ANVFSFNVLLAAYARQLRI---ASARQLFDQIPQPDLVSYNTLISAYADCG----- 110 (677)
Q Consensus 40 ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g----- 110 (677)
+...+.+.|++++|.+.|.+..+ .++..+..|...|...|++ ++|...|+...+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 44555667777777777777665 4455555566666666766 77887777776666667777766555555
Q ss_pred ChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh-----hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh----h
Q 037537 111 DTESALSLFKDMREKRFDTDGFTLSGLITASSNNLC-----LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL----D 181 (677)
Q Consensus 111 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~ 181 (677)
++++|+..|++..+.|.. + .+..+-..+...+. .+.+.+......| ++.....|...|...+.+ +
T Consensus 89 ~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 667888888887775522 1 22222221111111 1112222222222 233334444445444432 2
Q ss_pred HHHHHHhhcCCCCCeeeHHHHHHHHHhCC---CchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHH
Q 037537 182 EAKRVFYEMGEIKDEVSWNSMVVAYGQHR---EGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLI 258 (677)
Q Consensus 182 ~A~~~f~~m~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 258 (677)
++..++... ...+...+..|...|.+.| +.++|++.|++..+.|
T Consensus 163 ~a~~~~~~a-~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-------------------------------- 209 (452)
T 3e4b_A 163 DVERICKAA-LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-------------------------------- 209 (452)
T ss_dssp HHHHHHHHH-TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------------------------------
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--------------------------------
Confidence 233333333 2223335555555555555 4555555555554443
Q ss_pred HhCCCCchhhHHHHHHHHHHc----CCCHHHHHHHHhhCCCCChhhHHHHHhh-h--cccCCCHHHHHHHHHHHhhcCCC
Q 037537 259 KSGFHQNSHIGSGLIDLYAKC----SGDMRDCMKVFEEIPQPDLVLWNTMISG-Y--SQKEEYSDQALGCFKKLNRVGYH 331 (677)
Q Consensus 259 ~~g~~~~~~~~~~li~~y~~~----g~~~~~A~~~f~~~~~~~~~~~~~li~~-~--~~~~~~~~~A~~l~~~m~~~g~~ 331 (677)
+++...+..|..+|..- ++ .++|.+.|++....+...+..+-.. | ... +++++|+..|++..+.|
T Consensus 210 ----~~~a~~~~~Lg~~y~~g~~~~~d-~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~-~d~~~A~~~~~~Aa~~g-- 281 (452)
T 3e4b_A 210 ----TVTAQRVDSVARVLGDATLGTPD-EKTAQALLEKIAPGYPASWVSLAQLLYDFPEL-GDVEQMMKYLDNGRAAD-- 281 (452)
T ss_dssp ----CSCHHHHHHHHHHHTCGGGSSCC-HHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGG-CCHHHHHHHHHHHHHTT--
T ss_pred ----CHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHCC--
Confidence 22222223333444321 23 6666666665542233444444444 2 234 78888888888877655
Q ss_pred CCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccC-----CHHHHHHHHhcCCCCCcchHHHH
Q 037537 332 PDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCG-----NLEDARRLFDRMPEHNTVSLNSM 406 (677)
Q Consensus 332 p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g-----~~~~A~~~~~~~~~~~~~~~~~l 406 (677)
+ +.....|..+|. .| ++++|...|++....++..+..|
T Consensus 282 -~-----------------------------------~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~L 324 (452)
T 3e4b_A 282 -Q-----------------------------------PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYL 324 (452)
T ss_dssp -C-----------------------------------HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHH
T ss_pred -C-----------------------------------HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHH
Confidence 1 344456666666 44 88999999988773355667777
Q ss_pred HHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCccChHHHHHHH
Q 037537 407 IAGYAQ----HGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH----TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMI 478 (677)
Q Consensus 407 i~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 478 (677)
...|.. ..+.++|...|++..+.| .|+ ....+-..|.. ..+.++|...|+...+. |. ++.......+
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-g~-~~a~~~l~~l 399 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG-QNS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ-DT-PEANDLATQL 399 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT-CTT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT-CC-HHHHHHHHHH
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC-hHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC-CC-HHHHHHHHHH
Confidence 766665 348899999999998877 333 33444444443 45888999998888775 53 2222222222
Q ss_pred HHHhhcCChHHHHHHHHh
Q 037537 479 DLLGRAGKLTDAERLIEA 496 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~ 496 (677)
......+++++|.++.++
T Consensus 400 ~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 400 EAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp HTTCCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 323334456666666654
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.36 E-value=4.2e-11 Score=115.56 Aligned_cols=199 Identities=15% Similarity=0.098 Sum_probs=160.5
Q ss_pred hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 298 LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 298 ~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
...|..+...+... |++++|++.|+++.+. .|+. ..++..+..
T Consensus 37 ~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~--~~~~----------------------------------~~~~~~la~ 79 (252)
T 2ho1_A 37 RDAYIQLGLGYLQR-GNTEQAKVPLRKALEI--DPSS----------------------------------ADAHAALAV 79 (252)
T ss_dssp HHHHHHHHHHHHHT-TCTGGGHHHHHHHHHH--CTTC----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHHHHhc--CCCh----------------------------------HHHHHHHHH
Confidence 45677777777777 8888899988888764 2332 455677788
Q ss_pred HHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 453 (677)
.|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+...+...|++++
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 88889999999988887653 3566788888999999999999999999987444554 5677888888899999999
Q ss_pred HHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 037537 454 GQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAAS 533 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~ 533 (677)
|..+++.+.+. . +.+...+..+...|.+.|++++|.+.++++ ++..|.+...+..++.+|...
T Consensus 160 A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 222 (252)
T 2ho1_A 160 AKEYFEKSLRL-N-RNQPSVALEMADLLYKEREYVPARQYYDLF---------------AQGGGQNARSLLLGIRLAKVF 222 (252)
T ss_dssp HHHHHHHHHHH-C-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc-C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCcCcHHHHHHHHHHHHHc
Confidence 99999998875 2 235778888999999999999999999876 456677888899999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 037537 534 GKWEEVATIRRLMRDRG 550 (677)
Q Consensus 534 g~~~~a~~~~~~m~~~g 550 (677)
|++++|.+.++++.+..
T Consensus 223 g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 223 EDRDTAASYGLQLKRLY 239 (252)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHC
Confidence 99999999999987753
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.35 E-value=1.2e-10 Score=122.86 Aligned_cols=344 Identities=11% Similarity=0.086 Sum_probs=227.8
Q ss_pred HHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-
Q 037537 102 LISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL- 180 (677)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~- 180 (677)
+...+.+.|++++|+++|++..+.|. |+ .+..|-.+|...|+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~-----------------------------------A~~~Lg~~y~~~g~~~ 52 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SE-----------------------------------AQVGLADIQVGTRDPA 52 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CT-----------------------------------GGGTCC----------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HH-----------------------------------HHHHHHHHHHccCCCC
Confidence 55667788999999999998877652 22 122333455566777
Q ss_pred --hHHHHHHhhcCCCCCeeeHHHHHHHHHhCC-----CchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCCh---HHH
Q 037537 181 --DEAKRVFYEMGEIKDEVSWNSMVVAYGQHR-----EGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDL---VGG 250 (677)
Q Consensus 181 --~~A~~~f~~m~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~~a 250 (677)
++|.+.|++. ...+...+..|...+...+ ++++|+..|++..+.|... .+..+...+...+.. ..+
T Consensus 53 d~~~A~~~~~~A-~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a 128 (452)
T 3e4b_A 53 QIKQAEATYRAA-ADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNA 128 (452)
T ss_dssp -------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCH
T ss_pred CHHHHHHHHHHH-HhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHH
Confidence 8999999998 4447778888888666665 7789999999999876433 455555555444433 345
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHcCC---CHHHHHHHHhhCCCCChhhHHHHHhhhcccCC---CHHHHHHHHHH
Q 037537 251 LQFHAHLIKSGFHQNSHIGSGLIDLYAKCSG---DMRDCMKVFEEIPQPDLVLWNTMISGYSQKEE---YSDQALGCFKK 324 (677)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~---~~~~A~~l~~~ 324 (677)
.+.+....+.| +......|...|...+. ..+.+..+++.....+...+..+...|... | +.++|++.|++
T Consensus 129 ~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~-g~~~~~~~A~~~~~~ 204 (452)
T 3e4b_A 129 QQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKK-QQPEQQAELLKQMEA 204 (452)
T ss_dssp HHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcccHHHHHHHHHH
Confidence 55555555555 35566677777777662 266677778777777777888888888887 8 89999999999
Q ss_pred HhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHcc----CCHHHHHHHHhcCCCCCc
Q 037537 325 LNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKC----GNLEDARRLFDRMPEHNT 400 (677)
Q Consensus 325 m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~----g~~~~A~~~~~~~~~~~~ 400 (677)
..+.|... ...+..|..+|... ++.++|...|++....++
T Consensus 205 aa~~g~~~------------------------------------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~ 248 (452)
T 3e4b_A 205 GVSRGTVT------------------------------------AQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYP 248 (452)
T ss_dssp HHHTTCSC------------------------------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGST
T ss_pred HHHCCCHH------------------------------------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCH
Confidence 88876222 22224455555444 688999999988773356
Q ss_pred chHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHhHHhcCCccChH
Q 037537 401 VSLNSMIAG-Y--AQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG-----KVAEGQKYFSMMKDMFGFEPEGE 472 (677)
Q Consensus 401 ~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~ 472 (677)
..+..|... | ...++.++|++.|++..+.| +...+..+-..|. .| ++++|...|+... .-+..
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~ 319 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVA 319 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHH
Confidence 677777776 4 46889999999999999877 5566666666665 55 9999999998876 23566
Q ss_pred HHHHHHHHHhh----cCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh----cCChHHHHHHHH
Q 037537 473 HYSCMIDLLGR----AGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA----SGKWEEVATIRR 544 (677)
Q Consensus 473 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~ 544 (677)
.+..|..+|.. ..++++|.++|++... +.++.+...|..+|.. ..+.++|...++
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-----------------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-----------------NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-----------------TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-----------------hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 67777777765 4489999999987632 2456778889999875 458999999999
Q ss_pred HHHhCCC
Q 037537 545 LMRDRGV 551 (677)
Q Consensus 545 ~m~~~g~ 551 (677)
+..+.|.
T Consensus 383 ~A~~~g~ 389 (452)
T 3e4b_A 383 LAKAQDT 389 (452)
T ss_dssp HHHTTCC
T ss_pred HHHHCCC
Confidence 9888774
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.34 E-value=3.1e-11 Score=116.66 Aligned_cols=219 Identities=11% Similarity=0.081 Sum_probs=131.1
Q ss_pred eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCC--CCc----hhhHHH
Q 037537 198 SWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGF--HQN----SHIGSG 271 (677)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~~ 271 (677)
.|..+...+...|++++|+..|++..+.. .+..++..+..++...|+++.|...+..+++... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34555566666666666666666665554 5555566666666666666666666665554321 111 345555
Q ss_pred HHHHHHHcCCCHHHHHHHHhhCCC--CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccCh
Q 037537 272 LIDLYAKCSGDMRDCMKVFEEIPQ--PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSP 349 (677)
Q Consensus 272 li~~y~~~g~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 349 (677)
+...|.+.|+ +++|...|++... |+. ..+... |++++|+..++++... .|+
T Consensus 85 l~~~~~~~~~-~~~A~~~~~~a~~~~~~~-------~~~~~~-~~~~~a~~~~~~~~~~--~~~---------------- 137 (258)
T 3uq3_A 85 IGNAYHKLGD-LKKTIEYYQKSLTEHRTA-------DILTKL-RNAEKELKKAEAEAYV--NPE---------------- 137 (258)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHCCCH-------HHHHHH-HHHHHHHHHHHHHHHC--CHH----------------
T ss_pred HHHHHHHccc-HHHHHHHHHHHHhcCchh-------HHHHHH-hHHHHHHHHHHHHHHc--Ccc----------------
Confidence 5555555555 5555555555432 221 123333 5556666666655542 121
Q ss_pred hHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 037537 350 SLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWM 426 (677)
Q Consensus 350 ~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 426 (677)
...++..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++.
T Consensus 138 ------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 138 ------------------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp ------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 144556667777777777777777776543 34556777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 427 LETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 427 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
.+.. +.+..++..+...+...|++++|...++...+.
T Consensus 200 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 200 IEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7643 334666777777777777777777777776654
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.34 E-value=2.7e-11 Score=118.48 Aligned_cols=215 Identities=10% Similarity=-0.085 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHh
Q 037537 268 IGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISAC 344 (677)
Q Consensus 268 ~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 344 (677)
++..+...|...|+ +++|...|++.. ..+...|..+...|... |++++|+..|++..+. .|+.
T Consensus 45 ~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~--~~~~---------- 110 (275)
T 1xnf_A 45 LLYERGVLYDSLGL-RALARNDFSQALAIRPDMPEVFNYLGIYLTQA-GNFDAAYEAFDSVLEL--DPTY---------- 110 (275)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTC----------
T ss_pred HHHHHHHHHHHccc-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhc--Cccc----------
Confidence 34444444444444 555555554432 23345566666666666 6677777777666653 2221
Q ss_pred hccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCChHHHHHH
Q 037537 345 SNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--HNTVSLNSMIAGYAQHGIGMEALRL 422 (677)
Q Consensus 345 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l 422 (677)
..++..+...|.+.|++++|...|+++.+ |+...+...+..+...|++++|+..
T Consensus 111 ------------------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 111 ------------------------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp ------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHH
Confidence 44556666677777777777777776643 3333334444455667899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-----hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 423 FEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-----GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 423 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+++..... +++...+ .++..+...++.++|...++...+. .|+ ...+..+...|.+.|++++|.+.+++.
T Consensus 167 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 167 LKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 98887753 4444444 3666777788888999888877643 342 577888999999999999999999877
Q ss_pred CCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 037537 498 PFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIR 543 (677)
Q Consensus 498 ~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 543 (677)
++++|++.. ....++...|++++|++.+
T Consensus 242 ---------------l~~~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 ---------------VANNVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---------------HTTCCTTCH---HHHHHHHHHHHHHHC----
T ss_pred ---------------HhCCchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 455665544 3466788889999887765
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.34 E-value=1.8e-11 Score=117.23 Aligned_cols=200 Identities=16% Similarity=0.102 Sum_probs=145.5
Q ss_pred CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHH
Q 037537 296 PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNAL 375 (677)
Q Consensus 296 ~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 375 (677)
.....|..+...+... |++++|+.+|+++.+. .|+. ..++..+
T Consensus 21 ~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~--~~~~----------------------------------~~~~~~l 63 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEF-GDYEKAAEAFTKAIEE--NKED----------------------------------AIPYINF 63 (243)
T ss_dssp ----------------------CCTTHHHHHTT--CTTC----------------------------------HHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHh--Cccc----------------------------------HHHHHHH
Confidence 3445666677777777 8888888888888763 3332 4455677
Q ss_pred HHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 037537 376 VAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVA 452 (677)
Q Consensus 376 i~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 452 (677)
...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|+++
T Consensus 64 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~ 142 (243)
T 2q7f_A 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPK 142 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHH
Confidence 7888888999999888887653 356778888889999999999999999998854 456778888888899999999
Q ss_pred HHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 037537 453 EGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA 532 (677)
Q Consensus 453 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~ 532 (677)
+|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ++..|+++.+|..++.+|..
T Consensus 143 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~la~~~~~ 205 (243)
T 2q7f_A 143 LALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAV---------------TEQDPGHADAFYNAGVTYAY 205 (243)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCcccHHHHHHHHHHHHH
Confidence 999999998865 2335778888899999999999999998876 45677888899999999999
Q ss_pred cCChHHHHHHHHHHHhCC
Q 037537 533 SGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 533 ~g~~~~a~~~~~~m~~~g 550 (677)
.|++++|.+.++++.+..
T Consensus 206 ~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 206 KENREKALEMLDKAIDIQ 223 (243)
T ss_dssp TTCTTHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHccC
Confidence 999999999999887643
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.32 E-value=9.5e-11 Score=110.58 Aligned_cols=198 Identities=13% Similarity=0.052 Sum_probs=146.2
Q ss_pred hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 298 LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 298 ~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
...|..+...+... |++++|++.|+++.+. .|+. ..++..+..
T Consensus 8 ~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~--~~~~----------------------------------~~~~~~l~~ 50 (225)
T 2vq2_A 8 SNIKTQLAMEYMRG-QDYRQATASIEDALKS--DPKN----------------------------------ELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTC----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hhHHHHHHHHHHHHHh--Cccc----------------------------------hHHHHHHHH
Confidence 44566666677777 7777777777777653 2321 345566677
Q ss_pred HHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQH-GIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVA 452 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 452 (677)
.|...|++++|.+.|++..+ .+...|..+...|... |++++|+..|+++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 77777888888877776543 3556777788888888 888888888888887333344 567777788888888888
Q ss_pred HHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCC-CCchhHHHHHHHHH
Q 037537 453 EGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEP-SNAVPYVMLANIYA 531 (677)
Q Consensus 453 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p-~~~~~~~~l~~~y~ 531 (677)
+|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ++..| .++..+..+...+.
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 193 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKY---------------QSRVEVLQADDLLLGWKIAK 193 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------HHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCCCHHHHHHHHHHHH
Confidence 888888888765 1224677888888888889999988888876 35567 77788888888888
Q ss_pred hcCChHHHHHHHHHHHhC
Q 037537 532 ASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 532 ~~g~~~~a~~~~~~m~~~ 549 (677)
..|+.++|..+++.+.+.
T Consensus 194 ~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 194 ALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHh
Confidence 889998888888887653
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.31 E-value=3.5e-11 Score=113.37 Aligned_cols=192 Identities=15% Similarity=0.034 Sum_probs=145.9
Q ss_pred CCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHH
Q 037537 263 HQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVC 339 (677)
Q Consensus 263 ~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ 339 (677)
+++...+..+...+.+.|+ +++|...|++..+ .+...|..+...+.+. |++++|+..|++..+. .|+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~--~P~~----- 72 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGR-YDAALTLFERALKENPQDPEALYWLARTQLKL-GLVNPALENGKTLVAR--TPRY----- 72 (217)
T ss_dssp --CCHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTC-----
T ss_pred CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCc-----
Confidence 4566677777888888888 8888888887643 4567788888888888 9999999999998874 4543
Q ss_pred HHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHcc-----------CCHHHHHHHHhcCCC--C-CcchHHH
Q 037537 340 VISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKC-----------GNLEDARRLFDRMPE--H-NTVSLNS 405 (677)
Q Consensus 340 ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~-----------g~~~~A~~~~~~~~~--~-~~~~~~~ 405 (677)
...+..+...|.+. |++++|...|++..+ | +...|..
T Consensus 73 -----------------------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 123 (217)
T 2pl2_A 73 -----------------------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ 123 (217)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 44555666666666 999999999998764 3 5678999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhc
Q 037537 406 MIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRA 484 (677)
Q Consensus 406 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~ 484 (677)
+...|...|++++|+..|++.++.. .+...+..+..++...|++++|...|+.+.+. .| +...+..+..++.+.
T Consensus 124 lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 124 RGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLK 198 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHc
Confidence 9999999999999999999999977 77889999999999999999999999999875 45 577888999999999
Q ss_pred CChHHHHHHHHhC
Q 037537 485 GKLTDAERLIEAM 497 (677)
Q Consensus 485 g~~~~A~~~~~~m 497 (677)
|++++|.+.+++.
T Consensus 199 g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 199 GKAEEAARAAALE 211 (217)
T ss_dssp -------------
T ss_pred cCHHHHHHHHHHH
Confidence 9999999999876
No 48
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.30 E-value=8.5e-11 Score=107.41 Aligned_cols=163 Identities=12% Similarity=0.137 Sum_probs=143.8
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
+.+|..+...|.+.|++++|.+.|++..+ .++.+|..+...|.+.|++++|+..+....... +.+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 67899999999999999999999998764 466789999999999999999999999998853 44466777778888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHH
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVM 525 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~ 525 (677)
...++++.+...+....+. .+.+...+..+..+|.+.|++++|.+.|++. ++++|.++.+|..
T Consensus 84 ~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~---------------l~~~p~~~~~~~~ 146 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKT---------------ISIKPGFIRAYQS 146 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHH---------------HHhcchhhhHHHH
Confidence 9999999999999999875 2335778889999999999999999999876 5788999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 037537 526 LANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 526 l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++.+|.+.|++++|.+.+++..+.
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhC
Confidence 999999999999999999998764
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.27 E-value=2.5e-11 Score=116.27 Aligned_cols=211 Identities=10% Similarity=0.086 Sum_probs=145.5
Q ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 037537 266 SHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVIS 342 (677)
Q Consensus 266 ~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 342 (677)
...+..+...+...|+ +++|...|+++.+ .+...|..+...+... |++++|++.|++..+. .|+.
T Consensus 23 ~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~--~~~~-------- 90 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGD-YEKAAEAFTKAIEENKEDAIPYINFANLLSSV-NELERALAFYDKALEL--DSSA-------- 90 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTC--------
T ss_pred HHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc--CCcc--------
Confidence 3445555566666666 7777777766532 3456677777777777 8888888888887764 2321
Q ss_pred HhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHH
Q 037537 343 ACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEA 419 (677)
Q Consensus 343 a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 419 (677)
..++..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|
T Consensus 91 --------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 91 --------------------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp --------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHH
T ss_pred --------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 45566777788888888888888887643 4566788888999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCC
Q 037537 420 LRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPF 499 (677)
Q Consensus 420 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (677)
+..++++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+..+|.+.|++++|.+.++++
T Consensus 145 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-- 219 (243)
T 2q7f_A 145 LPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKA-- 219 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH--
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHH--
Confidence 99999998753 445778888888999999999999999998875 2335778888999999999999999999876
Q ss_pred CCChHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 037537 500 NPGSIALKAANHFLQLEPSNAVPYVMLANIYAA 532 (677)
Q Consensus 500 ~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~ 532 (677)
++++|+++..+..+......
T Consensus 220 -------------~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 220 -------------IDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp -------------HHHCTTCHHHHHHHTC----
T ss_pred -------------HccCcchHHHHHHHHHHHhh
Confidence 46777777777666554433
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.27 E-value=3e-11 Score=125.54 Aligned_cols=229 Identities=10% Similarity=-0.005 Sum_probs=152.0
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhhCCC-----CC----hhhHHHHHhhhcccCCC--------------------HHHH
Q 037537 268 IGSGLIDLYAKCSGDMRDCMKVFEEIPQ-----PD----LVLWNTMISGYSQKEEY--------------------SDQA 318 (677)
Q Consensus 268 ~~~~li~~y~~~g~~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~~~~--------------------~~~A 318 (677)
++..+...|...|+ +++|...|++..+ ++ ..++..+...|... |+ +++|
T Consensus 89 ~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 89 ASGNLGNTLKVLGN-FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc-CCcccccccchhhhhhhhHHHHHHHH
Confidence 44455555555565 6666665554431 11 23566666667666 77 7777
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-
Q 037537 319 LGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE- 397 (677)
Q Consensus 319 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~- 397 (677)
+..+.+....- .+.+..+....++..+...|...|++++|...|++..+
T Consensus 167 ~~~~~~al~~~------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 167 VDFYEENLSLV------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHHHHHH------------------------------HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------------------------HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77776654310 00000111145678888999999999999999887653
Q ss_pred ----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 398 ----HN----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNI-PPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 398 ----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
++ ..+|..+...|...|++++|+..+++..+..- .++ ..++..+...+...|++++|..+++...+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 12 23788899999999999999999999875310 111 457788888999999999999999988764
Q ss_pred cCCccC----hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChH
Q 037537 465 FGFEPE----GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWE 537 (677)
Q Consensus 465 ~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~ 537 (677)
..-.++ ...+..+...|.+.|++++|.+.+++... ..+. ....|....++..+..+|...|+..
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE--------ISRE-VGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------HHHH-TTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHH-hcCCcchhHHHHHHHHHHHHhhHhH
Confidence 211122 55788889999999999999999987521 0000 0111223456778888888887654
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.27 E-value=3.9e-10 Score=108.66 Aligned_cols=199 Identities=9% Similarity=0.029 Sum_probs=110.4
Q ss_pred eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 037537 196 EVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDL 275 (677)
Q Consensus 196 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 275 (677)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|+++.|.+.+..+.+.. +.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~---------- 104 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRN---------- 104 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCc----------
Confidence 4557777777777888888888877776642 1234455555555555555555555555555442 122
Q ss_pred HHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHH
Q 037537 276 YAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQI 355 (677)
Q Consensus 276 y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i 355 (677)
...|..+...|... |++++|+++|+++...+..|+.
T Consensus 105 ----------------------~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~--------------------- 140 (252)
T 2ho1_A 105 ----------------------ARVLNNYGGFLYEQ-KRYEEAYQRLLEASQDTLYPER--------------------- 140 (252)
T ss_dssp ----------------------HHHHHHHHHHHHHT-TCHHHHHHHHHHHTTCTTCTTH---------------------
T ss_pred ----------------------HHHHHHHHHHHHHH-hHHHHHHHHHHHHHhCccCccc---------------------
Confidence 33344444444444 5555555555555442122221
Q ss_pred HHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 037537 356 HALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIP 432 (677)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 432 (677)
..++..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|...|+++.+.. +
T Consensus 141 -------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 206 (252)
T 2ho1_A 141 -------------SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-G 206 (252)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-C
T ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 33344455555555555555555554432 234455566666666666666666666666532 3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 433 PTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 433 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
.+...+..+...+...|+.++|.++++.+.+.
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 207 QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666554
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.26 E-value=5.1e-10 Score=109.19 Aligned_cols=160 Identities=11% Similarity=0.017 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--HhHHHHHHHHH
Q 037537 166 VNNSLLTCYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD--MYTLASILTAF 241 (677)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~ 241 (677)
........+...|++++|...|++. ...| +...|..+...|...|++++|++.|++..+.+..|+ ..+|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3345567788999999999999987 3333 455899999999999999999999999988442222 23477888888
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHhhhcccCCCHHHH
Q 037537 242 TSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEEYSDQA 318 (677)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~A 318 (677)
...|+++.|...+..+.+.. +.+..++..+...|.+.|+ +++|...|++..+ .+...|..+...+... +++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGN-FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-KEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC-HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccC-HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHHHHH
Confidence 99999999999999998875 4566788888999999888 9999999988764 3445666666233334 688889
Q ss_pred HHHHHHHhhc
Q 037537 319 LGCFKKLNRV 328 (677)
Q Consensus 319 ~~l~~~m~~~ 328 (677)
++.|++..+.
T Consensus 162 ~~~~~~a~~~ 171 (272)
T 3u4t_A 162 DSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9988888764
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.26 E-value=1.8e-11 Score=119.76 Aligned_cols=111 Identities=16% Similarity=-0.014 Sum_probs=49.0
Q ss_pred CChHHHHHHHHHHHHcCC---CCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHH
Q 037537 13 RDLVTGKSLHALYLKNLV---PFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQ 86 (677)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 86 (677)
|+++.|...++.+++... +.+..++..+...+...|++++|...|+.+.. .+..++..+...|...|++++|.+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 445555555555554421 11233444444455555555555555544443 223344444444444444444444
Q ss_pred HhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhH
Q 037537 87 LFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMR 123 (677)
Q Consensus 87 ~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 123 (677)
.|+...+ .+..+|..+...|.+.|++++|...|+++.
T Consensus 99 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 138 (275)
T 1xnf_A 99 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY 138 (275)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4443332 123344444444444444444444444443
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.24 E-value=1.1e-09 Score=107.12 Aligned_cols=220 Identities=12% Similarity=0.005 Sum_probs=163.5
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhhCCCC-ChhhHHHHHhhhcc----cCCCHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 037537 267 HIGSGLIDLYAKCSGDMRDCMKVFEEIPQP-DLVLWNTMISGYSQ----KEEYSDQALGCFKKLNRVGYHPDDCSFVCVI 341 (677)
Q Consensus 267 ~~~~~li~~y~~~g~~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll 341 (677)
..+..+...|...|+ .++|...|++..++ +..++..+...|.. . +++++|+..|++..+.+ +
T Consensus 7 ~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~---~-------- 73 (273)
T 1ouv_A 7 KELVGLGAKSYKEKD-FTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVE-KNLKKAASFYAKACDLN---Y-------- 73 (273)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---C--------
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcC-CCHHHHHHHHHHHHHCC---C--------
Confidence 344445555555555 66666666554432 33455555555555 6 77788888887776643 1
Q ss_pred HHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHc----cCCHHHHHHHHhcCCC-CCcchHHHHHHHHHH----
Q 037537 342 SACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSK----CGNLEDARRLFDRMPE-HNTVSLNSMIAGYAQ---- 412 (677)
Q Consensus 342 ~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~---- 412 (677)
+..+..+..+|.. .+++++|...|++..+ .+..++..+...|..
T Consensus 74 ---------------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 74 ---------------------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp ---------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSS
T ss_pred ---------------------------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCc
Confidence 4455667777777 8888888888887654 466678888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhh----c
Q 037537 413 HGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH----TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGR----A 484 (677)
Q Consensus 413 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~ 484 (677)
.+++++|++.|++..+.+ +...+..+...+.. .+++++|...|+...+. + +...+..+..+|.+ .
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCC
Confidence 899999999999999865 55666777777776 89999999999998875 3 45677888888888 9
Q ss_pred CChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 037537 485 GKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA----SGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 485 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~g 550 (677)
+++++|.+.+++.. +..| +..+..|..+|.. .|++++|.+.+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~---------------~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKAC---------------ELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHH---------------HTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHH---------------hCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99999999998762 3333 5678899999999 999999999999988876
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.24 E-value=7.8e-10 Score=104.21 Aligned_cols=206 Identities=9% Similarity=-0.080 Sum_probs=159.7
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 037537 95 DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCY 174 (677)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~ 174 (677)
+...|..+...+...|++++|++.|++..+.. | .+..++..+...|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~--------------------------------~~~~~~~~l~~~~ 52 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--P--------------------------------KNELAWLVRAEIY 52 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T--------------------------------TCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c--------------------------------cchHHHHHHHHHH
Confidence 45567888888999999999999999887642 2 2334556777888
Q ss_pred HhcCChhHHHHHHhhc-C-CCCCeeeHHHHHHHHHhC-CCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCCChHHH
Q 037537 175 SRNGFLDEAKRVFYEM-G-EIKDEVSWNSMVVAYGQH-REGLEALQLFQEMVSLQLGLD-MYTLASILTAFTSLEDLVGG 250 (677)
Q Consensus 175 ~~~g~~~~A~~~f~~m-~-~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a 250 (677)
...|++++|.+.|++. . ...+...|..+...+... |++++|+..|+++.+.+..|+ ...+..+...+...|+++.|
T Consensus 53 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 53 QYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999887 1 233566788888999999 999999999999887433443 56777788888899999999
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---C-CChhhHHHHHhhhcccCCCHHHHHHHHHHHh
Q 037537 251 LQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---Q-PDLVLWNTMISGYSQKEEYSDQALGCFKKLN 326 (677)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~-~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~ 326 (677)
...+..+.+.. +.+...+..+...|.+.|+ .++|...|++.. . .+...|..+...+... |+.++|..+++.+.
T Consensus 133 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 133 EAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ-LGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL-GNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHH
Confidence 99999988875 4457788888899999999 999999998764 2 4566777777777777 99999999998887
Q ss_pred hcCCCCCcchHHH
Q 037537 327 RVGYHPDDCSFVC 339 (677)
Q Consensus 327 ~~g~~p~~~t~~~ 339 (677)
.. .|+......
T Consensus 210 ~~--~p~~~~~~~ 220 (225)
T 2vq2_A 210 AN--FPYSEELQT 220 (225)
T ss_dssp HH--CTTCHHHHH
T ss_pred Hh--CCCCHHHHH
Confidence 64 466555433
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.23 E-value=1e-10 Score=121.99 Aligned_cols=279 Identities=11% Similarity=0.020 Sum_probs=184.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-H----hHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHH
Q 037537 199 WNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-M----YTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLI 273 (677)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 273 (677)
+..+...+...|++++|+..|++..+.+ |+ . ..+..+...+...|+++.|...+..+++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------- 115 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL------------- 115 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------
Confidence 4445566677777777777777776642 22 1 23444445555555555555554444322
Q ss_pred HHHHHcCCCHHHHHHHHhhCC--CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCC-CCcchHHHHHHHhhccChh
Q 037537 274 DLYAKCSGDMRDCMKVFEEIP--QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYH-PDDCSFVCVISACSNLSPS 350 (677)
Q Consensus 274 ~~y~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~ 350 (677)
++... ......|..+...|... |++++|+..|++....... .+.
T Consensus 116 ----------------~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~---------------- 162 (411)
T 4a1s_A 116 ----------------AKSMNDRLGEAKSSGNLGNTLKVM-GRFDEAAICCERHLTLARQLGDR---------------- 162 (411)
T ss_dssp ----------------HHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCH----------------
T ss_pred ----------------HHHccCchHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhhch----------------
Confidence 11111 01234566666777777 8888888888876542100 010
Q ss_pred HHHHHHHHHHHhhcccCccchhHHHHHHHHccCC-----------------HHHHHHHHhcCCC-----C----CcchHH
Q 037537 351 LGKQIHALTIKIEIRSNRISVNNALVAMYSKCGN-----------------LEDARRLFDRMPE-----H----NTVSLN 404 (677)
Q Consensus 351 ~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~ 404 (677)
+....++..+...|...|+ +++|.+.|++..+ . ...+|.
T Consensus 163 ---------------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 227 (411)
T 4a1s_A 163 ---------------LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACG 227 (411)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0114566778888888888 8888888776532 1 234788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc----ChHHHH
Q 037537 405 SMIAGYAQHGIGMEALRLFEWMLETNI-PPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP----EGEHYS 475 (677)
Q Consensus 405 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~ 475 (677)
.+...|...|++++|+..|++..+..- .++ ..++..+...+...|++++|...++...+...-.. ....+.
T Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 307 (411)
T 4a1s_A 228 NLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCY 307 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 889999999999999999999876321 112 23778888899999999999999998876421111 156788
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 476 CMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+..+|.+.|++++|.+.+++... ..... ...+....+|..+..+|...|++++|.+.+++..+.
T Consensus 308 ~la~~~~~~g~~~~A~~~~~~al~--------~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 308 SLGNTYTLLHEFNTAIEYHNRHLA--------IAQEL-GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--------HHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--------HHHHC-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 889999999999999999987621 00000 001122457889999999999999999999988664
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.23 E-value=7.5e-11 Score=125.23 Aligned_cols=207 Identities=13% Similarity=0.086 Sum_probs=173.2
Q ss_pred HHHHHHHHhhCC---CCChhhHHHHHhhhcccCCCH-HHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHH
Q 037537 283 MRDCMKVFEEIP---QPDLVLWNTMISGYSQKEEYS-DQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHAL 358 (677)
Q Consensus 283 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~ 358 (677)
++++...+++.. ..+...|..+...|... |++ ++|++.|++..+. .|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~~A~~~~~~al~~--~p~~------------------------ 136 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVT-PDYSPEAEVLLSKAVKL--EPEL------------------------ 136 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSS-SSCCHHHHHHHHHHHHH--CTTC------------------------
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhc-cccHHHHHHHHHHHHhh--CCCC------------------------
Confidence 555555665443 34667788888888888 999 9999999988764 3432
Q ss_pred HHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--CCcchHHHHHHHHHHc---------CChHHHHHHHHHHH
Q 037537 359 TIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--HNTVSLNSMIAGYAQH---------GIGMEALRLFEWML 427 (677)
Q Consensus 359 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~ 427 (677)
..++..+...|.+.|++++|.+.|++..+ |+...|..+...|... |++++|++.|++.+
T Consensus 137 ----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al 206 (474)
T 4abn_A 137 ----------VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206 (474)
T ss_dssp ----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence 56778889999999999999999998764 6667888899999999 99999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCcc----ChHHHHHHHHHHhhcCChHHHHHHHH
Q 037537 428 ETNIPPTNITFVSVLSACAHT--------GKVAEGQKYFSMMKDMFGFEP----EGEHYSCMIDLLGRAGKLTDAERLIE 495 (677)
Q Consensus 428 ~~g~~p~~~t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~ 495 (677)
+.. +.+...+..+..++... |++++|...|+...+. .| +...|..+..+|.+.|++++|.+.|+
T Consensus 207 ~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 282 (474)
T 4abn_A 207 QMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFS 282 (474)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 853 44478888898999888 9999999999999875 45 67889999999999999999999998
Q ss_pred hCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 037537 496 AMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRL 545 (677)
Q Consensus 496 ~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 545 (677)
+. ++++|+++.++..+..++...|++++|.+.+.+
T Consensus 283 ~a---------------l~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 283 QA---------------AALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HH---------------HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HH---------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 76 578899999999999999999999999875543
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.22 E-value=2.3e-10 Score=116.99 Aligned_cols=244 Identities=10% Similarity=0.080 Sum_probs=164.4
Q ss_pred eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHHccCCC-hHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 037537 198 SWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-MYTLASILTAFTSLED-LVGGLQFHAHLIKSGFHQNSHIGSGLIDL 275 (677)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 275 (677)
.|+.+...+.+.|++++|++.|++.++. .|+ ...|..+..++...|+ +++|...+..+++..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------------- 162 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------------- 162 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--------------
Confidence 4666777777777777777777777663 233 3445555555555553 555555555555442
Q ss_pred HHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHH
Q 037537 276 YAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQI 355 (677)
Q Consensus 276 y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i 355 (677)
..+...|+.+...+... |++++|+..|+++++. .|+.
T Consensus 163 -------------------P~~~~a~~~~g~~~~~~-g~~~eAl~~~~kal~l--dP~~--------------------- 199 (382)
T 2h6f_A 163 -------------------PKNYQVWHHRRVLVEWL-RDPSQELEFIADILNQ--DAKN--------------------- 199 (382)
T ss_dssp -------------------TTCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHH--CTTC---------------------
T ss_pred -------------------CCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHh--CccC---------------------
Confidence 23445555555566666 6677777777776653 2332
Q ss_pred HHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHH-cCChHHH-----HHHHHHH
Q 037537 356 HALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQ-HGIGMEA-----LRLFEWM 426 (677)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-~g~~~~A-----~~l~~~m 426 (677)
..+|..+..+|.+.|++++|...|+++.+ .+...|+.+...|.. .|..++| ++.|++.
T Consensus 200 -------------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~A 266 (382)
T 2h6f_A 200 -------------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 266 (382)
T ss_dssp -------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 55666677777777777777777777654 355678888888888 6665777 5889999
Q ss_pred HHCCCCCC-HHHHHHHHHHHhccC--CHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcC---------ChHHHHHHH
Q 037537 427 LETNIPPT-NITFVSVLSACAHTG--KVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAG---------KLTDAERLI 494 (677)
Q Consensus 427 ~~~g~~p~-~~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~ 494 (677)
++. .|+ ...|..+...+...| ++++|...+..+ + .-..+...+..+.++|.+.| .+++|.+++
T Consensus 267 l~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~ 341 (382)
T 2h6f_A 267 IKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELC 341 (382)
T ss_dssp HHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 884 454 678888888888888 689999988887 3 23345778889999998874 358888888
Q ss_pred HhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 037537 495 EAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA 532 (677)
Q Consensus 495 ~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~ 532 (677)
+++. .+++|.....|..++..+..
T Consensus 342 ~~l~--------------~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 342 EILA--------------KEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHH--------------HTTCGGGHHHHHHHHHHHHH
T ss_pred HHHH--------------HHhCchhHHHHHHHHHHHHH
Confidence 7651 36777777788877666543
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.22 E-value=7.7e-11 Score=118.66 Aligned_cols=281 Identities=11% Similarity=0.057 Sum_probs=180.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHH
Q 037537 199 WNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-----MYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLI 273 (677)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 273 (677)
+......+...|++++|+..|++..+.. |+ ...+..+...+...|+++.|...+..+.+..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------ 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh------------
Confidence 3444556677777777777777776642 32 2344455555555666666665555443320
Q ss_pred HHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCC-CCcchHHHHHHHhhccChhHH
Q 037537 274 DLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYH-PDDCSFVCVISACSNLSPSLG 352 (677)
Q Consensus 274 ~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~ 352 (677)
.+.++ . .....+|..+...|... |++++|+..|.+..+.... ++....
T Consensus 74 ---~~~~~-~-----------~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~--------------- 122 (338)
T 3ro2_A 74 ---RTIGD-Q-----------LGEAKASGNLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGE--------------- 122 (338)
T ss_dssp ---HHHTC-H-----------HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHH---------------
T ss_pred ---hcccc-c-----------HHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCchHH---------------
Confidence 00000 0 01133556666677777 8888888888776542110 111111
Q ss_pred HHHHHHHHHhhcccCccchhHHHHHHHHccCC--------------------HHHHHHHHhcCCC-----C----CcchH
Q 037537 353 KQIHALTIKIEIRSNRISVNNALVAMYSKCGN--------------------LEDARRLFDRMPE-----H----NTVSL 403 (677)
Q Consensus 353 ~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~--------------------~~~A~~~~~~~~~-----~----~~~~~ 403 (677)
..++..+...|...|+ +++|...+++..+ + ....+
T Consensus 123 ----------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 186 (338)
T 3ro2_A 123 ----------------ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAF 186 (338)
T ss_dssp ----------------HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3355667777777777 7888777765432 1 23468
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC----hHHH
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNI-PPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE----GEHY 474 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~ 474 (677)
..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ ...+
T Consensus 187 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 266 (338)
T 3ro2_A 187 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 266 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 8888999999999999999999875310 112 237778888899999999999999988754211111 5577
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 475 SCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
..+...|.+.|++++|.+.+++.... .... .-.+....++..+..+|...|++++|...+++..+.
T Consensus 267 ~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 267 YSLGNTYTLLQDYEKAIDYHLKHLAI--------AQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH--------HHhc-CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88889999999999999999876210 0000 001112457889999999999999999999998764
No 60
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.21 E-value=6.2e-08 Score=105.82 Aligned_cols=428 Identities=7% Similarity=0.023 Sum_probs=217.6
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCC---hhHHHHHh
Q 037537 15 LVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLR---IASARQLF 88 (677)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~f 88 (677)
..+-...++..+..+ +.|...|..+++.+.+.+.++.++.+|+++.. .....|..-+..-.+.|+ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 444555667777666 77899999999999888999999999998888 445578888888888888 99999999
Q ss_pred ccCCC-----CCcchHHHHHHHHHhCCCh----hH----HHHHHHHhHh-cCC-CCCc-ccHHHHHHHhhc---------
Q 037537 89 DQIPQ-----PDLVSYNTLISAYADCGDT----ES----ALSLFKDMRE-KRF-DTDG-FTLSGLITASSN--------- 143 (677)
Q Consensus 89 ~~m~~-----~~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~~-~t~~~ll~a~~~--------- 143 (677)
++... |++..|..-+....+.++. ++ +.++|+.... .|. .|+. ..|...+.-...
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 88653 6777788777766555543 23 3466766543 465 5654 334333332211
Q ss_pred chh--hHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-------------CChhHHHHHHhhc-----CCC---CC-----
Q 037537 144 NLC--LIKQLHCLAIYCGFDHYASVNNSLLTCYSRN-------------GFLDEAKRVFYEM-----GEI---KD----- 195 (677)
Q Consensus 144 ~~~--~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~-------------g~~~~A~~~f~~m-----~~~---~~----- 195 (677)
... .++.++..++......-..+|......--.. ..++.|+..+.++ +.. |.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 111 4566666665422222223332222111110 1122233333321 000 00
Q ss_pred ---------------eeeHHHHHHHHHhCCC-------chHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHH-H
Q 037537 196 ---------------EVSWNSMVVAYGQHRE-------GLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGL-Q 252 (677)
Q Consensus 196 ---------------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~-~ 252 (677)
...|...+.---.++. .+.+..+|++.+.. .+-+...|.....-+...|+.+.|. +
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 0113333322211110 11223344444332 1113333333333333444444443 5
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCC--
Q 037537 253 FHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGY-- 330 (677)
Q Consensus 253 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~-- 330 (677)
+++..+.. ++.+..++-..+...-+.|+ ++.|+++| +++.....
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~-~e~aR~iy--------------------------------ek~l~~l~~~ 411 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTK-IPEIETTI--------------------------------LSCIDRIHLD 411 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTC-HHHHHHHH--------------------------------HHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCC-HHHHHHHH--------------------------------HHHHHHHHHH
Confidence 55544432 23333344444444444444 55555444 44443210
Q ss_pred -------CCC------------cchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccC-CHHHHH
Q 037537 331 -------HPD------------DCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCG-NLEDAR 389 (677)
Q Consensus 331 -------~p~------------~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g-~~~~A~ 389 (677)
.|+ ...|...+....+.+ ++.++.++..+++...... ..+|-..+.+-.++| +.+.|+
T Consensus 412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-~~lyi~~A~lE~~~~~d~e~Ar 490 (679)
T 4e6h_A 412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-PDIYLENAYIEYHISKDTKTAC 490 (679)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-THHHHHHHHHHHTTTSCCHHHH
T ss_pred hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHhCCCHHHHH
Confidence 021 112344444444444 5555555555554411111 223333333333443 367777
Q ss_pred HHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 390 RLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPP--TNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 390 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
++|+...+ .+...|...+.-....|+.+.|..+|++.+.....+ ....|...+.--...|+.+.+..+.+++.+.
T Consensus 491 ~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 491 KVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77776554 244556666666666777777777777776643212 1345666666666777777777777777765
Q ss_pred cCCccChHHHHHHHHHHh
Q 037537 465 FGFEPEGEHYSCMIDLLG 482 (677)
Q Consensus 465 ~~~~p~~~~~~~li~~~~ 482 (677)
.|+......+++-|.
T Consensus 571 ---~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 571 ---FPEVNKLEEFTNKYK 585 (679)
T ss_dssp ---STTCCHHHHHHHHTC
T ss_pred ---CCCCcHHHHHHHHhc
Confidence 344444444455553
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.21 E-value=9.5e-11 Score=121.75 Aligned_cols=279 Identities=12% Similarity=0.065 Sum_probs=182.8
Q ss_pred eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHH
Q 037537 198 SWNSMVVAYGQHREGLEALQLFQEMVSLQLGLD-----MYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGL 272 (677)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 272 (677)
.+......+...|++++|+..|++..+.+ |+ ...+..+...+...|+++.|...+..+++.
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------ 76 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL------------ 76 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------
Confidence 34555566666777777777777666542 22 123344444444455555554444333221
Q ss_pred HHHHHHcCCCHHHHHHHHhhCCC--CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCC-CCcchHHHHHHHhhccCh
Q 037537 273 IDLYAKCSGDMRDCMKVFEEIPQ--PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYH-PDDCSFVCVISACSNLSP 349 (677)
Q Consensus 273 i~~y~~~g~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~ 349 (677)
...... ....+|..+...|... |++++|+..|.+..+.... ++....
T Consensus 77 -----------------~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~------------ 126 (406)
T 3sf4_A 77 -----------------ARTIGDQLGEAKASGNLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGE------------ 126 (406)
T ss_dssp -----------------HHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHH------------
T ss_pred -----------------HHhccccHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcccccch------------
Confidence 111111 1234677777888888 9999999999887653100 111000
Q ss_pred hHHHHHHHHHHHhhcccCccchhHHHHHHHHccCC--------------------HHHHHHHHhcCCC-----C----Cc
Q 037537 350 SLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGN--------------------LEDARRLFDRMPE-----H----NT 400 (677)
Q Consensus 350 ~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~--------------------~~~A~~~~~~~~~-----~----~~ 400 (677)
..++..+...|...|+ +++|...|++..+ . ..
T Consensus 127 -------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~ 187 (406)
T 3sf4_A 127 -------------------ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQG 187 (406)
T ss_dssp -------------------HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHH
Confidence 4456777788888888 8888877765432 1 23
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC----h
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNI-PPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE----G 471 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 471 (677)
.+|..+...|...|++++|+..|++..+..- .++ ..++..+...+...|++++|..+++...+...-.++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 4688889999999999999999999876310 122 237888888999999999999999988754211111 5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 472 EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.++..+...|.+.|++++|.+.+++.... ... ..-.+....++..+..+|...|++++|.+.+++..+
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAI--------AQE-LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHH--------HHh-cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57888899999999999999999876210 000 000111256788999999999999999999998765
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.21 E-value=1.5e-10 Score=120.77 Aligned_cols=274 Identities=9% Similarity=-0.017 Sum_probs=187.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhc-CCCCC-e----eeHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-CHhHH
Q 037537 166 VNNSLLTCYSRNGFLDEAKRVFYEM-GEIKD-E----VSWNSMVVAYGQHREGLEALQLFQEMVSL----QLGL-DMYTL 234 (677)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~ 234 (677)
.+..+...+...|++++|...|++. ...|+ . ..|..+...|...|++++|++.|++..+. +-.| ...++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3445667888999999999999998 22233 2 46888999999999999999999998653 1111 23445
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCC
Q 037537 235 ASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEY 314 (677)
Q Consensus 235 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~ 314 (677)
..+...+...|+++.|...+..+++.. .+.++ . .....+|..+...|... |+
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~-~-----------~~~~~~~~~l~~~~~~~-g~ 181 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLA---------------RQLGD-R-----------LSEGRALYNLGNVYHAK-GK 181 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHTC-H-----------HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHhhc-h-----------HHHHHHHHHHHHHHHHc-Cc
Confidence 555555666666666666655544321 00000 0 01123555666666666 77
Q ss_pred -----------------HHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 315 -----------------SDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 315 -----------------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
+++|++.+.+..+.. ...+..+....++..+..
T Consensus 182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~------------------------------~~~~~~~~~~~~~~~la~ 231 (411)
T 4a1s_A 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLM------------------------------RDLGDRGAQGRACGNLGN 231 (411)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH------------------------------HHHTCHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHH------------------------------HHcCCHHHHHHHHHHHHH
Confidence 777777776654310 000000111456788889
Q ss_pred HHHccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIP-PT----NITFVSVLS 443 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~ 443 (677)
.|...|++++|...|++..+ .+ ..+|..+...|...|++++|+..|++..+..-. .+ ..++..+..
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN 311 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999987754 11 237888999999999999999999988763210 11 457788888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCcc----ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 444 ACAHTGKVAEGQKYFSMMKDMFGFEP----EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.+...|++++|..+++...+...-.+ ....+..+...|.+.|++++|.+.+++.
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 89999999999999998876421111 1457788899999999999999999876
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.20 E-value=6.2e-10 Score=114.92 Aligned_cols=230 Identities=10% Similarity=0.078 Sum_probs=170.7
Q ss_pred HHHHHHHcCCCHHHHHHHHhhCCC-----CC----hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 037537 272 LIDLYAKCSGDMRDCMKVFEEIPQ-----PD----LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVIS 342 (677)
Q Consensus 272 li~~y~~~g~~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 342 (677)
....+...|+ +++|...|++..+ ++ ..+|..+...|... |++++|+..+.+..+.--..+. +
T Consensus 109 ~g~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~--~----- 179 (383)
T 3ulq_A 109 RGMYELDQRE-YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM-KQTYFSMDYARQAYEIYKEHEA--Y----- 179 (383)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCST--T-----
T ss_pred HHHHHHHhcC-HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCcc--c-----
Confidence 4455666677 8888888877642 22 34677788888888 9999999998887653111110 0
Q ss_pred HhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHc
Q 037537 343 ACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQH 413 (677)
Q Consensus 343 a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~ 413 (677)
.+....+++.+...|...|++++|...|++..+ ++ ..+|+.+...|...
T Consensus 180 ----------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 180 ----------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 000045678889999999999999999887653 11 23788899999999
Q ss_pred CChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC---CccChHHHHHHHHHHhhcC
Q 037537 414 GIGMEALRLFEWMLET----NIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFG---FEPEGEHYSCMIDLLGRAG 485 (677)
Q Consensus 414 g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~---~~p~~~~~~~li~~~~~~g 485 (677)
|++++|++.|++..+. +..|+ ..++..+...+...|++++|...++...+... -......+..+...|.+.|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999998872 32244 56788899999999999999999998876421 1112334567888899999
Q ss_pred C---hHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 486 K---LTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 486 ~---~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+ +++|..++++....| .....+..|+..|...|++++|...+++..+
T Consensus 318 ~~~~~~~al~~~~~~~~~~----------------~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESKMLYA----------------DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHTTCHH----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCcCHH----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9 999999999884322 2345788999999999999999999998865
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.20 E-value=2.2e-10 Score=115.30 Aligned_cols=272 Identities=11% Similarity=0.009 Sum_probs=182.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhc-CCCCC-----eeeHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-CHhHH
Q 037537 166 VNNSLLTCYSRNGFLDEAKRVFYEM-GEIKD-----EVSWNSMVVAYGQHREGLEALQLFQEMVSL----QLGL-DMYTL 234 (677)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~f~~m-~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~ 234 (677)
.+...-..+...|++++|...|++. ...|+ ...|..+...+...|++++|++.+++.... +-.| ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444557788999999999999998 22233 356888999999999999999999987652 1111 13344
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCC--ChhhHHHHHhhhcccC
Q 037537 235 ASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQP--DLVLWNTMISGYSQKE 312 (677)
Q Consensus 235 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~~ 312 (677)
..+...+...|+++.|...+...++.. .....+ ...++..+...|...
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------------------~~~~~~~~~~~~~~~l~~~~~~~- 136 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDIS-----------------------------RELNDKVGEARALYNLGNVYHAK- 136 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------HHTTCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHH-----------------------------HHhcCchHHHHHHHHHHHHHHHc-
Confidence 455555556666666666555544321 000000 012444555555555
Q ss_pred CC--------------------HHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchh
Q 037537 313 EY--------------------SDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVN 372 (677)
Q Consensus 313 ~~--------------------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 372 (677)
|+ +++|++.+.+..... ...+..+....++
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~------------------------------~~~~~~~~~~~~~ 186 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV------------------------------TALGDRAAQGRAF 186 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH------------------------------HHHTCHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH------------------------------HhcCCHHHHHHHH
Confidence 55 677777776654310 0000001114567
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHH
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNI-PPT----NITF 438 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~ 438 (677)
..+...|...|++++|...|++..+ ++ ..+|..+...|...|++++|...+++..+... .++ ..++
T Consensus 187 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 266 (338)
T 3ro2_A 187 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 266 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 7888899999999999999987653 11 23788889999999999999999998875310 111 4567
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCccC----hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 439 VSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE----GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 439 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..+...+...|++++|..+++...+...-.++ ...+..+...|.+.|++++|.+.+++.
T Consensus 267 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 267 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 78888899999999999999988754211111 447788899999999999999999876
No 65
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.20 E-value=1e-09 Score=99.75 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=142.2
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44567788889999999999999999876 356678889999999999999999999999863 44677888889999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHH
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVM 525 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~ 525 (677)
...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ++..|.++..+..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~ 149 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIA---------------LGLRPNEGKVHRA 149 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHH---------------HhcCccchHHHHH
Confidence 9999999999999999875 2346778889999999999999999999876 4667888899999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 037537 526 LANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 526 l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++.+|...|++++|.+.+++..+.
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999998764
No 66
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.18 E-value=1.6e-09 Score=105.95 Aligned_cols=223 Identities=13% Similarity=0.044 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhhcCCCC-CeeeHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 037537 165 SVNNSLLTCYSRNGFLDEAKRVFYEMGEIK-DEVSWNSMVVAYGQ----HREGLEALQLFQEMVSLQLGLDMYTLASILT 239 (677)
Q Consensus 165 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 239 (677)
..+..+-..|...|++++|.+.|++. ..| +..++..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a-~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 82 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKA-CDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 34444555556666666666666655 222 33445555555555 666666666666655543 4444444444
Q ss_pred HHcc----CCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCH
Q 037537 240 AFTS----LEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYS 315 (677)
Q Consensus 240 a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~ 315 (677)
.+.. .+++++|...+....+.+ +...+..+...|.+. . ... +++
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~-~---------------------------~~~-~~~ 130 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG-K---------------------------VVT-RDF 130 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC-S---------------------------SSC-CCH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC-C---------------------------Ccc-cCH
Confidence 4544 555555555555555443 333444444444430 0 004 566
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHc----cCCHHHHHHH
Q 037537 316 DQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSK----CGNLEDARRL 391 (677)
Q Consensus 316 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~ 391 (677)
++|+..|++..+.+ + ...+..+...|.+ .+++++|...
T Consensus 131 ~~A~~~~~~a~~~~---~-----------------------------------~~a~~~lg~~~~~~~~~~~~~~~A~~~ 172 (273)
T 1ouv_A 131 KKAVEYFTKACDLN---D-----------------------------------GDGCTILGSLYDAGRGTPKDLKKALAS 172 (273)
T ss_dssp HHHHHHHHHHHHTT---C-----------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHhcC---c-----------------------------------HHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 66666666665543 1 2223344444444 5666666666
Q ss_pred HhcCCC-CCcchHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhH
Q 037537 392 FDRMPE-HNTVSLNSMIAGYAQ----HGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH----TGKVAEGQKYFSMMK 462 (677)
Q Consensus 392 ~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~ 462 (677)
|++..+ .+...+..+...|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|...|+...
T Consensus 173 ~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 173 YDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC 249 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 655433 244555666666666 677777777777766643 24455555566666 667777777777766
Q ss_pred Hh
Q 037537 463 DM 464 (677)
Q Consensus 463 ~~ 464 (677)
+.
T Consensus 250 ~~ 251 (273)
T 1ouv_A 250 KL 251 (273)
T ss_dssp HH
T ss_pred Hc
Confidence 54
No 67
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.18 E-value=1e-09 Score=112.19 Aligned_cols=236 Identities=11% Similarity=0.086 Sum_probs=137.1
Q ss_pred hhHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCC-hhHHHHHhccCCC---CCcchHHHHHHHHH
Q 037537 35 YLSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLR-IASARQLFDQIPQ---PDLVSYNTLISAYA 107 (677)
Q Consensus 35 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~f~~m~~---~~~~~~~~li~~~~ 107 (677)
..+..+..++.+.|++++|...+++++. .+..+|+.+...|.+.|+ +++|+..|++..+ .+...|+.+...+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4455555666666666666666666665 334556666666666664 6666666666543 24556666666666
Q ss_pred hCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 037537 108 DCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVF 187 (677)
Q Consensus 108 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 187 (677)
+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|...|
T Consensus 178 ~~g~~~eAl~~~~kal~ld----------------------------------P~~~~a~~~lg~~~~~~g~~~eAl~~~ 223 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD----------------------------------AKNYHAWQHRQWVIQEFKLWDNELQYV 223 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC----------------------------------ccCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 6667777776666666532 223344455556666666666666666
Q ss_pred hhc--CCCCCeeeHHHHHHHHHh-CCCchHH-----HHHHHHHHHCCCCC-CHhHHHHHHHHHccCC--ChHHHHHHHHH
Q 037537 188 YEM--GEIKDEVSWNSMVVAYGQ-HREGLEA-----LQLFQEMVSLQLGL-DMYTLASILTAFTSLE--DLVGGLQFHAH 256 (677)
Q Consensus 188 ~~m--~~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~--~~~~a~~~~~~ 256 (677)
+++ ....+...|+.+...+.+ .|..++| ++.|++.+.. .| +...|..+...+...| +.+++.+.+..
T Consensus 224 ~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 224 DQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 665 333456666666666666 4544665 3666666552 34 3445555555566555 46666666655
Q ss_pred HHHhCCCCchhhHHHHHHHHHHcC--------CCHHHHHHHHhhC-CCCCh---hhHHHHHhhh
Q 037537 257 LIKSGFHQNSHIGSGLIDLYAKCS--------GDMRDCMKVFEEI-PQPDL---VLWNTMISGY 308 (677)
Q Consensus 257 ~~~~g~~~~~~~~~~li~~y~~~g--------~~~~~A~~~f~~~-~~~~~---~~~~~li~~~ 308 (677)
+ + .-+.+...+..+.+.|.+.| +..++|.++|+++ .+.|. ..|..+...+
T Consensus 302 ~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 302 L-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp H-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred h-c-cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 5 2 22334556666666776653 1146777777776 43332 3455554444
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.17 E-value=2.2e-10 Score=126.71 Aligned_cols=163 Identities=17% Similarity=0.249 Sum_probs=146.3
Q ss_pred cCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 037537 366 SNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSV 441 (677)
Q Consensus 366 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 441 (677)
|+.+..++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++.++. .|+ ..+|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 33477899999999999999999999998764 35678999999999999999999999999984 565 7899999
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCc
Q 037537 442 LSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNA 520 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~ 520 (677)
..++...|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.|++. ++++|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A---------------l~l~P~~~ 145 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTA---------------LKLKPDFP 145 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCSCCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCCh
Confidence 99999999999999999999865 56 4788999999999999999999999876 68899999
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 521 VPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 521 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+|..|+.+|...|+|++|.+.+++..+
T Consensus 146 ~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 146 DAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999999998887754
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.16 E-value=3.4e-08 Score=107.87 Aligned_cols=427 Identities=11% Similarity=0.077 Sum_probs=237.5
Q ss_pred cChhHHHHHHHHHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCCC---hhHHHHHHHHhHhcCC-CCCcccHH
Q 037537 63 ANVFSFNVLLAAYARQLRIASARQLFDQIPQ--P-DLVSYNTLISAYADCGD---TESALSLFKDMREKRF-DTDGFTLS 135 (677)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~-~p~~~t~~ 135 (677)
.|...|..++..+.+.+.++.|+.+|+.+.. | ....|..-+..-.+.++ ++.+..+|++...... .|+...|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 5778899999999999999999999999875 4 45568888888888888 9999999999887541 25544443
Q ss_pred HHHHHh---hcc--h-h----hHHHHHHHHHH-hCC-CCC-hhHHHHHHHHHHh---------cCChhHHHHHHhhcCCC
Q 037537 136 GLITAS---SNN--L-C----LIKQLHCLAIY-CGF-DHY-ASVNNSLLTCYSR---------NGFLDEAKRVFYEMGEI 193 (677)
Q Consensus 136 ~ll~a~---~~~--~-~----~~~~i~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~~~~A~~~f~~m~~~ 193 (677)
.-+.-. ... + . ..+++++..+. .|. .++ ..+|...+..... .++++.++++|++. ..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra-L~ 222 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL-LC 222 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH-Hh
Confidence 333221 111 0 0 33445544443 244 332 3455555544332 22344455555554 11
Q ss_pred -CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHh--CCC----Cch
Q 037537 194 -KDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKS--GFH----QNS 266 (677)
Q Consensus 194 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~----~~~ 266 (677)
|.. .+..+-..| ...... + +..+-..++.- ...+++.|+..+..+.+. ++. ...
T Consensus 223 iP~~-~~~~~w~~Y-------------~~fe~~-~--~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 223 QPMD-CLESMWQRY-------------TQWEQD-V--NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp SCCS-SHHHHHHHH-------------HHHHHH-H--CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred CccH-HHHHHHHHH-------------HHHHHh-c--CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 100 011111111 111000 0 00000000000 000112222222221110 110 000
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHhhCCCCC------hhhHHHHHhhhcccCC-------CHHHHHHHHHHHhhcCCCCC
Q 037537 267 HIGSGLIDLYAKCSGDMRDCMKVFEEIPQPD------LVLWNTMISGYSQKEE-------YSDQALGCFKKLNRVGYHPD 333 (677)
Q Consensus 267 ~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~~~-------~~~~A~~l~~~m~~~g~~p~ 333 (677)
... .....+.++ ...|...|.---.+ + ..+.+..+|++.... ..-+
T Consensus 284 ~~~-------------------~~~~~p~~~~~~~~ql~lW~~yi~fEk~~-~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~ 342 (679)
T 4e6h_A 284 NQA-------------------TESNLPKPNEYDVQQLLIWLEWIRWESDN-KLELSDDLHKARMTYVYMQAAQH-VCFA 342 (679)
T ss_dssp TTC-------------------CTTTSCCTTCCCHHHHHHHHHHHHHHHTC-TTCCCHHHHHHHHHHHHHHHHHH-TTTC
T ss_pred ccc-------------------hhccCCCCchhHHHHHHHHHHHHHHHHhC-CccccchhhHHHHHHHHHHHHHH-cCCC
Confidence 000 000000000 12233333322111 1 112344556666553 1223
Q ss_pred cchHHHHHHHhhccC-hhHHH-HHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-------------C
Q 037537 334 DCSFVCVISACSNLS-PSLGK-QIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-------------H 398 (677)
Q Consensus 334 ~~t~~~ll~a~~~~~-~~~~~-~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------------~ 398 (677)
...|.....-+...+ .+.+. .++...+.. .|.+..++-.++...-+.|+++.|+++|+.+.+ |
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 344444444455556 66675 888777652 233366778888888999999999999987753 2
Q ss_pred C------------cchHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHHh
Q 037537 399 N------------TVSLNSMIAGYAQHGIGMEALRLFEWMLET-NIPPTNITFVSVLSACAH-TGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 399 ~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~ 464 (677)
+ ...|...+....+.|..+.|..+|.+.++. + .+....|......-.+ .++.+.|..+|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1 235888888888899999999999999886 2 1223334332222223 35689999999999986
Q ss_pred cCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCC---CCchhHHHHHHHHHhcCChHHHHH
Q 037537 465 FGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEP---SNAVPYVMLANIYAASGKWEEVAT 541 (677)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p---~~~~~~~~l~~~y~~~g~~~~a~~ 541 (677)
+. -+...+...++...+.|+.+.|..+|++.... .| .....|...+..-...|+.+.+.+
T Consensus 500 ~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~---------------~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 500 FA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDK---------------ISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp HT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT---------------SSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33 34556778888888999999999999986421 12 234578888888889999999999
Q ss_pred HHHHHHhCC
Q 037537 542 IRRLMRDRG 550 (677)
Q Consensus 542 ~~~~m~~~g 550 (677)
+.++|.+.-
T Consensus 563 v~~R~~~~~ 571 (679)
T 4e6h_A 563 LEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999998754
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.14 E-value=4.7e-09 Score=104.63 Aligned_cols=167 Identities=10% Similarity=0.050 Sum_probs=133.0
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC--C-Ccc-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NTV-SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSA 444 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 444 (677)
..++..++..+.+.|++++|..+|++..+ | +.. .|..+...+.+.|+.++|..+|++.++.. +++...|......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~ 177 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 56778889999999999999999998765 3 343 79999999999999999999999999854 3444555544333
Q ss_pred Hh-ccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCC-Cchh
Q 037537 445 CA-HTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPS-NAVP 522 (677)
Q Consensus 445 ~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~-~~~~ 522 (677)
.. ..|+.++|..+|+...+.+ +-+...|..+++.+.+.|++++|..+|++....+ .+.|+ +...
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------~l~p~~~~~l 243 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG------------SLPPEKSGEI 243 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS------------SSCGGGCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc------------CCCHHHHHHH
Confidence 22 3799999999999998762 2357889999999999999999999999773110 12443 5678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 523 YVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 523 ~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
|..++..+...|+.++|..+++++.+..
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999988754
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=4.1e-09 Score=108.45 Aligned_cols=225 Identities=11% Similarity=0.100 Sum_probs=166.5
Q ss_pred HHHHHcCCCHHHHHHHHhhCCC-----CC----hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCC-CC-cchHHHHHH
Q 037537 274 DLYAKCSGDMRDCMKVFEEIPQ-----PD----LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYH-PD-DCSFVCVIS 342 (677)
Q Consensus 274 ~~y~~~g~~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~-p~-~~t~~~ll~ 342 (677)
..+...|+ +++|...|++..+ ++ ..++..+...|... |++++|+..+.+..+.... ++ ....
T Consensus 109 ~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~----- 181 (378)
T 3q15_A 109 MYEFDQKE-YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM-KQTHVSMYHILQALDIYQNHPLYSIRT----- 181 (378)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTSTTCHHHH-----
T ss_pred HHHHHHCC-HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhCCCchhhH-----
Confidence 34455567 8888777776532 22 34677777788888 9999999998887653111 11 0000
Q ss_pred HhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHc
Q 037537 343 ACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQH 413 (677)
Q Consensus 343 a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~ 413 (677)
..+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...
T Consensus 182 --------------------------~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 182 --------------------------IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp --------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 55678889999999999999998877643 12 34688899999999
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC---hHHHHHHHHHHhhcC
Q 037537 414 GIGMEALRLFEWMLE-----TNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE---GEHYSCMIDLLGRAG 485 (677)
Q Consensus 414 g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g 485 (677)
|++++|++.|++..+ .. +....++..+...+...|++++|..+++...+...-.++ ...+..+...|...|
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999887 32 223677888889999999999999999998875322122 345666777788888
Q ss_pred C---hHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 486 K---LTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 486 ~---~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+ +++|...+++....| .....+..++..|...|++++|...+++..+
T Consensus 315 ~~~~~~~al~~~~~~~~~~----------------~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 315 DERKIHDLLSYFEKKNLHA----------------YIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHHTTCHH----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCChh----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8 999999998864221 2335678999999999999999999998754
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.06 E-value=1.5e-08 Score=100.91 Aligned_cols=178 Identities=9% Similarity=0.078 Sum_probs=93.0
Q ss_pred hHHHHHhccCCC---C-CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHH
Q 037537 82 ASARQLFDQIPQ---P-DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIY 157 (677)
Q Consensus 82 ~~A~~~f~~m~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~ 157 (677)
++|..+|++..+ | +...|..++..+.+.|++++|..+|++..+. .|+...
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~------------------------ 134 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPT------------------------ 134 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTH------------------------
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCcc------------------------
Confidence 555555554332 2 2335666666666666666666666666542 222110
Q ss_pred hCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-CCCC-CeeeHHHHHHHH-HhCCCchHHHHHHHHHHHCCCCCCHhHH
Q 037537 158 CGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-GEIK-DEVSWNSMVVAY-GQHREGLEALQLFQEMVSLQLGLDMYTL 234 (677)
Q Consensus 158 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~~-~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 234 (677)
.+|..+...+.+.|++++|+++|++. ...| +...|....... ...|++++|..+|++..+... -+...+
T Consensus 135 -------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 206 (308)
T 2ond_A 135 -------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYV 206 (308)
T ss_dssp -------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHH
T ss_pred -------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHH
Confidence 13344555555556666666666655 1112 222222222111 124666666666666655321 134555
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhC-CCC--chhhHHHHHHHHHHcCCCHHHHHHHHhhCC
Q 037537 235 ASILTAFTSLEDLVGGLQFHAHLIKSG-FHQ--NSHIGSGLIDLYAKCSGDMRDCMKVFEEIP 294 (677)
Q Consensus 235 ~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~~A~~~f~~~~ 294 (677)
..++..+.+.|+++.|+.+++.+++.. ++| ...++..++..+.+.|+ .+.|..+++++.
T Consensus 207 ~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~-~~~a~~~~~~a~ 268 (308)
T 2ond_A 207 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD-LASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 555566666666666666666666642 333 34566666666666666 777776666654
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.05 E-value=2.4e-09 Score=97.64 Aligned_cols=160 Identities=11% Similarity=0.092 Sum_probs=113.4
Q ss_pred ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHH
Q 037537 297 DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALV 376 (677)
Q Consensus 297 ~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li 376 (677)
+...|..+...|.+. |++++|++.|++..+. .|+. +.++..+.
T Consensus 4 ~~~iy~~lG~~~~~~-g~~~~A~~~~~~al~~--~p~~----------------------------------~~~~~~la 46 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTK-GDFDGAIRAYKKVLKA--DPNN----------------------------------VETLLKLG 46 (184)
T ss_dssp CHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH--CTTC----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCC----------------------------------HHHHHHHH
Confidence 345666666777766 7777777777776653 3432 45566677
Q ss_pred HHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 037537 377 AMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 453 (677)
..|.+.|++++|...+..... .+...+..+...+...++++.|.+.+.+..+.. +.+...+..+...+...|++++
T Consensus 47 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~ 125 (184)
T 3vtx_A 47 KTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDK 125 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchh
Confidence 777777777777777766543 345566667777778888888888888877743 3346677777777888888888
Q ss_pred HHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 454 GQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
|.+.|+...+. .| +...|..+..+|.+.|++++|.+.|++.
T Consensus 126 A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 126 AIEAYEKTISI---KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---cchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888887764 34 4667777888888888888888888765
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.05 E-value=2.8e-10 Score=113.37 Aligned_cols=236 Identities=16% Similarity=0.150 Sum_probs=147.2
Q ss_pred chhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--------C---ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcC---C
Q 037537 265 NSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--------P---DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVG---Y 330 (677)
Q Consensus 265 ~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g---~ 330 (677)
+..++..+...|...|+ +++|...|+++.+ . ....|..+...|... |++++|+..|++..... .
T Consensus 26 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGR-YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHh
Confidence 34566777777887777 8888887776542 1 224566677777777 78888888877765421 0
Q ss_pred CCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-----------CC
Q 037537 331 HPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-----------HN 399 (677)
Q Consensus 331 ~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----------~~ 399 (677)
.++. +....++..+...|...|++++|...|++..+ ..
T Consensus 104 ~~~~-------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (311)
T 3nf1_A 104 GKDH-------------------------------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 152 (311)
T ss_dssp CTTC-------------------------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCC-------------------------------hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 0111 11155667788888888888888888876542 12
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc------C
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLET------NIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMF------G 466 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~ 466 (677)
...|..+...|...|++++|++.|+++.+. +-.|+ ..++..+...+...|++++|..+++.+.+.. .
T Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345777788888888888888888888763 21333 3467777778888888888888888877531 0
Q ss_pred CccCh-------HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHH
Q 037537 467 FEPEG-------EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEV 539 (677)
Q Consensus 467 ~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a 539 (677)
..+.. ..+..+...+...+.+.+|...++.. ....|.++.+|..++.+|...|++++|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---------------~~~~~~~~~~~~~la~~~~~~g~~~~A 297 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC---------------KVDSPTVTTTLKNLGALYRRQGKFEAA 297 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC------------------------CHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc---------------CCCCchHHHHHHHHHHHHHHCCCHHHH
Confidence 11111 11112222233333444444444333 344566778899999999999999999
Q ss_pred HHHHHHHHh
Q 037537 540 ATIRRLMRD 548 (677)
Q Consensus 540 ~~~~~~m~~ 548 (677)
.+.+++..+
T Consensus 298 ~~~~~~al~ 306 (311)
T 3nf1_A 298 ETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.99 E-value=5.5e-09 Score=107.71 Aligned_cols=287 Identities=10% Similarity=-0.049 Sum_probs=193.1
Q ss_pred HHhcCChhHHHHHHhhc-----C--CCCCeeeHHHHHHHH--HhCCCchHHH-----------HHHHHHHHCCCCCCH--
Q 037537 174 YSRNGFLDEAKRVFYEM-----G--EIKDEVSWNSMVVAY--GQHREGLEAL-----------QLFQEMVSLQLGLDM-- 231 (677)
Q Consensus 174 ~~~~g~~~~A~~~f~~m-----~--~~~~~~~~~~li~~~--~~~g~~~~A~-----------~~~~~m~~~g~~pd~-- 231 (677)
+.+.+++++|..+++++ . ..+++..|-.++..- ...++.+.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45678899998888887 1 223333333333221 1122233333 566665432111110
Q ss_pred --hHHHHHHHHHccCCChHHHHHHHHHHHHhC--CC--C-chhhHHHHHHHHHHcCCCHHHHHHHHhhCCC-----CC--
Q 037537 232 --YTLASILTAFTSLEDLVGGLQFHAHLIKSG--FH--Q-NSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ-----PD-- 297 (677)
Q Consensus 232 --~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~--~-~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~-----~~-- 297 (677)
..+......+...|+++.|...+..+.+.- .+ + ...++..+...|...|+ .++|...+++..+ ++
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ-TYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCccch
Confidence 011124445678899999999999887641 11 1 23577888889999898 9988888876541 22
Q ss_pred ---hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCC-CCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhH
Q 037537 298 ---LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYH-PDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNN 373 (677)
Q Consensus 298 ---~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 373 (677)
..+++.+...|... |++++|+..|.+..+..-. ++.... ..++.
T Consensus 181 ~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~-------------------------------~~~~~ 228 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDL-KQYEDAISHFQKAYSMAEAEKQPQLM-------------------------------GRTLY 228 (383)
T ss_dssp HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHH-------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHcCChHHH-------------------------------HHHHH
Confidence 24677888888888 9999999999987753111 111111 45678
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC-HHHHHH
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNI---PPT-NITFVS 440 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~-~~t~~~ 440 (677)
.+...|...|++++|...|++..+ .+ ..++..+...|...|++++|...+++..+..- .|. ...+..
T Consensus 229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 308 (383)
T 3ulq_A 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999999999999999887643 22 34688899999999999999999999876310 122 234566
Q ss_pred HHHHHhccCC---HHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 441 VLSACAHTGK---VAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 441 ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+...+...|+ +++|..+++.. +..| ....+..+...|.+.|++++|.+.+++.
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESK----MLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777888888 77777777766 3334 3557788999999999999999999865
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.98 E-value=5e-10 Score=111.48 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhhCCC-----------CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhc---CCCCC
Q 037537 268 IGSGLIDLYAKCSGDMRDCMKVFEEIPQ-----------PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRV---GYHPD 333 (677)
Q Consensus 268 ~~~~li~~y~~~g~~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~---g~~p~ 333 (677)
++..+...|...|+ +++|...|++..+ .....|..+...|... |++++|+++|+++... ...++
T Consensus 113 ~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~ 190 (311)
T 3nf1_A 113 TLNNLAVLYGKRGK-YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ-GKYEEVEYYYQRALEIYQTKLGPD 190 (311)
T ss_dssp HHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhCCC
Confidence 44444445555555 5555555444321 1234567777778888 8899999988887653 01111
Q ss_pred cchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCC
Q 037537 334 DCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMP 396 (677)
Q Consensus 334 ~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 396 (677)
.... ..++..+...|.+.|++++|...|++..
T Consensus 191 ~~~~-------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 191 DPNV-------------------------------AKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp CHHH-------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CHHH-------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111 4455667777777777777777776543
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.96 E-value=7.2e-09 Score=98.13 Aligned_cols=161 Identities=10% Similarity=-0.019 Sum_probs=133.7
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE----HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLS 443 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 443 (677)
+..+..+...|.+.|++++|...|++..+ ++...|..+..+|...|++++|+..|++..+. .|+ ..++..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 56777888899999999999999997653 56677777999999999999999999999985 455 678888999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCccC-h-------HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhcc
Q 037537 444 ACAHTGKVAEGQKYFSMMKDMFGFEPE-G-------EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQL 515 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l 515 (677)
.+...|++++|...++...+. .|+ . ..|..+...+.+.|++++|.+.+++. +++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a---------------l~~ 146 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA---------------TDV 146 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------TTS
T ss_pred HHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH---------------Hhc
Confidence 999999999999999999875 443 3 45778888899999999999999877 355
Q ss_pred CCC--CchhHHHHHHHHHhcCCh---------------------------HHHHHHHHHHHhC
Q 037537 516 EPS--NAVPYVMLANIYAASGKW---------------------------EEVATIRRLMRDR 549 (677)
Q Consensus 516 ~p~--~~~~~~~l~~~y~~~g~~---------------------------~~a~~~~~~m~~~ 549 (677)
+|+ ++.+|..+..+|...|+. ++|...+++..+.
T Consensus 147 ~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 147 TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666 667777888887777776 8888888887664
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.96 E-value=7.5e-09 Score=109.78 Aligned_cols=161 Identities=10% Similarity=-0.000 Sum_probs=143.7
Q ss_pred cchhHHHHHHHHccCCH-HHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNL-EDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSA 444 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 444 (677)
...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++.++. .|+..++..+...
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~ 179 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMV 179 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHH
Confidence 66778888899999999 999999998754 35678999999999999999999999999984 5888889999999
Q ss_pred Hhcc---------CCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhc--------CChHHHHHHHHhCCCCCChHHH
Q 037537 445 CAHT---------GKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRA--------GKLTDAERLIEAMPFNPGSIAL 506 (677)
Q Consensus 445 ~~~~---------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~ 506 (677)
+... |++++|...|+...+. .| +...|..+..+|.+. |++++|.+.|++.
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~a--------- 247 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQA--------- 247 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---------
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH---------
Confidence 9999 9999999999999875 45 578889999999998 9999999999876
Q ss_pred HHHHHHhccCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 507 KAANHFLQLEP---SNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 507 ~~~~~l~~l~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++++| .++..|..+..+|...|++++|.+.+++..+.
T Consensus 248 ------l~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 248 ------EKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp ------HHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------HHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56788 89999999999999999999999999998764
No 79
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.93 E-value=2.8e-08 Score=84.61 Aligned_cols=130 Identities=18% Similarity=0.285 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLL 481 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 481 (677)
.|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|..+++.+.+. . +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHH
Confidence 57778888899999999999999998754 445677888888888999999999999998875 2 33567788889999
Q ss_pred hhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 482 GRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
.+.|++++|.+.++++ ++..|.++..+..++.+|...|++++|.+.++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKA---------------LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH---------------HHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999876 3556777888999999999999999999999988764
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.90 E-value=1.7e-07 Score=95.96 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=74.0
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCC----CCCc-chHHH-----HHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHH
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMP----EHNT-VSLNS-----MIAGYAQHGIGMEALRLFEWMLETNIPPT---NIT 437 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~----~~~~-~~~~~-----li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t 437 (677)
.+..+...+...|++++|...+++.. .++. ..|.. .+..+...|+.++|...+++.......++ ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 34556666667777777777666542 1111 12222 22335677777777777777654321111 224
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhc---CCccCh-HHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 438 FVSVLSACAHTGKVAEGQKYFSMMKDMF---GFEPEG-EHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 438 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+..+...+...|++++|...++...... +..++. ..+..+..+|.+.|+.++|.+.+++.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556666777788888877777765431 211222 35556667777888888888877765
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.90 E-value=1.5e-07 Score=96.63 Aligned_cols=234 Identities=10% Similarity=0.004 Sum_probs=137.5
Q ss_pred HHHHHHhCCChhHHHHHHHHhHhcCCC-CCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 037537 102 LISAYADCGDTESALSLFKDMREKRFD-TDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFL 180 (677)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 180 (677)
....+...|++++|+..|++..+.-.. +|... ...++..+...|...|++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------------~a~~~~~lg~~y~~~~~~ 157 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE-----------------------------KAEFHFKVAEAYYHMKQT 157 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH-----------------------------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHH-----------------------------HHHHHHHHHHHHHHcCCc
Confidence 344567888999999998887653211 22111 122345666778888888
Q ss_pred hHHHHHHhhc----CCCCC-----eeeHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCHhHHHHHHHHHccCCChHHH
Q 037537 181 DEAKRVFYEM----GEIKD-----EVSWNSMVVAYGQHREGLEALQLFQEMVSLQL-GLDMYTLASILTAFTSLEDLVGG 250 (677)
Q Consensus 181 ~~A~~~f~~m----~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~~~~~~a 250 (677)
+.|...+++. ...++ ..+++.+...|...|++++|++.|++..+..- .++..
T Consensus 158 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~------------------ 219 (378)
T 3q15_A 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR------------------ 219 (378)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH------------------
T ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH------------------
Confidence 8887777665 11111 33566777777778888888877777654210 00100
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC-------C-ChhhHHHHHhhhcccCCCHHHHHHHH
Q 037537 251 LQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ-------P-DLVLWNTMISGYSQKEEYSDQALGCF 322 (677)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~-------~-~~~~~~~li~~~~~~~~~~~~A~~l~ 322 (677)
....++..+...|...|+ .++|...|++..+ | ...++..+...|.+. |++++|...+
T Consensus 220 -------------~~~~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~ 284 (378)
T 3q15_A 220 -------------FIAISLLNIANSYDRSGD-DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA-GQTQKAFQFI 284 (378)
T ss_dssp -------------HHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHC-CCHHHHHHHH
Confidence 011233344444445455 5555555444321 1 234566667777777 8888888888
Q ss_pred HHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCC---HHHHHHHHhcCCCC-
Q 037537 323 KKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGN---LEDARRLFDRMPEH- 398 (677)
Q Consensus 323 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~---~~~A~~~~~~~~~~- 398 (677)
++.....-..+...+ ...++.+...|...|+ +++|...++.....
T Consensus 285 ~~al~~~~~~~~~~~-------------------------------~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~ 333 (378)
T 3q15_A 285 EEGLDHITARSHKFY-------------------------------KELFLFLQAVYKETVDERKIHDLLSYFEKKNLHA 333 (378)
T ss_dssp HHHHHHCCTTCCSCH-------------------------------HHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCHHH-------------------------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChh
Confidence 887764333222222 2233555566666777 77777777765431
Q ss_pred -CcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037537 399 -NTVSLNSMIAGYAQHGIGMEALRLFEWMLE 428 (677)
Q Consensus 399 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 428 (677)
....+..+...|...|++++|...|++..+
T Consensus 334 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 334 YIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 123455677777888888888888777654
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.86 E-value=1.1e-07 Score=86.01 Aligned_cols=159 Identities=15% Similarity=0.060 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhc
Q 037537 67 SFNVLLAAYARQLRIASARQLFDQIPQ---PDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSN 143 (677)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 143 (677)
.+..+...+...|++++|...|+.+.+ .+...|..+...+...|++++|...+++..+.. |
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~-------------- 73 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--P-------------- 73 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T--------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C--------------
Confidence 455666777778888888888887765 245667778888888888888888888877642 2
Q ss_pred chhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHH
Q 037537 144 NLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLEALQLFQE 221 (677)
Q Consensus 144 ~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 221 (677)
.+..++..+...|...|++++|.+.|++. ....+...|..+...+...|++++|++.|++
T Consensus 74 ------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 74 ------------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp ------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 23334456667777788888888888776 1223556677777778888888888888888
Q ss_pred HHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHh
Q 037537 222 MVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKS 260 (677)
Q Consensus 222 m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 260 (677)
..+.. +.+..++..+...+...|+++.|...+..+.+.
T Consensus 136 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 136 ALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 76653 234566666667777777777777777766654
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.86 E-value=4.4e-07 Score=92.88 Aligned_cols=223 Identities=13% Similarity=0.033 Sum_probs=145.3
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHccCChHHHHHHHhhccc-----cCh----hHHHHHHHH
Q 037537 8 TCVGRRDLVTGKSLHALYLKNLVPFSAY----LSNHFILLYSKCGCLSAAHHAFNQTQH-----ANV----FSFNVLLAA 74 (677)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~----~~~~~li~~ 74 (677)
.+...|+++.|...++..+...-..+.. .++.+...+...|++++|.+.+++... ++. .+.+.+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4567899999999999988765222222 456666778888999999999988776 222 235667778
Q ss_pred HHhcCChhHHHHHhccCCC-------C----CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhc
Q 037537 75 YARQLRIASARQLFDQIPQ-------P----DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSN 143 (677)
Q Consensus 75 ~~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 143 (677)
|...|++++|...+++..+ + ....+..+...+...|++++|...+++............
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------- 172 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ---------- 172 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG----------
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH----------
Confidence 8889999999888876542 1 123456677788889999999999988775432111100
Q ss_pred chhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc---CCCCCe-eeHHH-----HHHHHHhCCCchH
Q 037537 144 NLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM---GEIKDE-VSWNS-----MVVAYGQHREGLE 214 (677)
Q Consensus 144 ~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~-~~~~~-----li~~~~~~g~~~~ 214 (677)
....+..+...+...|++++|...+++. ...++. ..|.. .+..+...|++++
T Consensus 173 -------------------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 173 -------------------QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp -------------------GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence 1123455667788889999988888776 112221 22322 2234668888888
Q ss_pred HHHHHHHHHHCCCCCC---HhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 037537 215 ALQLFQEMVSLQLGLD---MYTLASILTAFTSLEDLVGGLQFHAHLIK 259 (677)
Q Consensus 215 A~~~~~~m~~~g~~pd---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 259 (677)
|...+++.......++ ...+..+...+...|++++|...+..+.+
T Consensus 234 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888765332211 12344555666677777777777666554
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.85 E-value=4.8e-08 Score=92.34 Aligned_cols=203 Identities=10% Similarity=0.010 Sum_probs=128.3
Q ss_pred CchhhHHHHHHHHHHcCCCHHHHHHHHhhCC---C-CChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHH
Q 037537 264 QNSHIGSGLIDLYAKCSGDMRDCMKVFEEIP---Q-PDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVC 339 (677)
Q Consensus 264 ~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~---~-~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ 339 (677)
.|+..+..+...|.+.|+ +++|...|++.. . ++...|..+...+... |++++|+..|++..+. .|+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~--~p~~----- 75 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKN-YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI-KKYKEAADYFDIAIKK--NYNL----- 75 (228)
T ss_dssp CCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHT--TCSH-----
T ss_pred cCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hcHHHHHHHHHHHHHh--Ccch-----
Confidence 345566666677777777 777777777653 2 5555666666666666 7777777777776653 3331
Q ss_pred HHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--C-Cc-------chHHHHHHH
Q 037537 340 VISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--H-NT-------VSLNSMIAG 409 (677)
Q Consensus 340 ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~-------~~~~~li~~ 409 (677)
..++..+...|.+.|++++|...|++..+ | +. ..|..+...
T Consensus 76 -----------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~ 126 (228)
T 4i17_A 76 -----------------------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQK 126 (228)
T ss_dssp -----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHH
Confidence 55667788888888888888888877653 2 33 346677777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCC
Q 037537 410 YAQHGIGMEALRLFEWMLETNIPPT---NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGK 486 (677)
Q Consensus 410 ~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 486 (677)
+...|++++|++.|++.++. .|+ ...+..+...+.. .+..+++.+... + ..+...|.... ....+.
T Consensus 127 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~-----~~~~~~~~a~~~-~-~~~~~~~~~~~--~~~~~~ 195 (228)
T 4i17_A 127 FQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYN-----NGADVLRKATPL-A-SSNKEKYASEK--AKADAA 195 (228)
T ss_dssp HHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHH-----HHHHHHHHHGGG-T-TTCHHHHHHHH--HHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHH-----HHHHHHHHHHhc-c-cCCHHHHHHHH--HHHHHH
Confidence 77888888888888888773 455 3455555555543 344445555443 1 22333443332 223455
Q ss_pred hHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHH
Q 037537 487 LTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIY 530 (677)
Q Consensus 487 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y 530 (677)
+++|...+++. ++++|+++.+...|..+.
T Consensus 196 ~~~A~~~~~~a---------------~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 196 FKKAVDYLGEA---------------VTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------hhcCCCCHHHHHHHHHHH
Confidence 67777776654 688898887777766554
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.79 E-value=1.8e-08 Score=88.32 Aligned_cols=142 Identities=9% Similarity=0.058 Sum_probs=117.0
Q ss_pred HHHHHHccCCHHHHHHHHhcCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 037537 375 LVAMYSKCGNLEDARRLFDRMPEH---NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKV 451 (677)
Q Consensus 375 li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 451 (677)
|..+|...|++++|...++..... +...+-.+...|.+.|++++|++.|++.++.. +-+..++..+...+...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 445666788999999999887653 45677889999999999999999999999853 33478899999999999999
Q ss_pred HHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHH-HHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHH
Q 037537 452 AEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERL-IEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANI 529 (677)
Q Consensus 452 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~ 529 (677)
++|...|+...+. .| +...+..+..+|.+.|++++|.+. +++. ++++|+++.+|.....+
T Consensus 82 ~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a---------------l~l~P~~~~~~~l~~~l 143 (150)
T 4ga2_A 82 DKAVECYRRSVEL---NPTQKDLVLKIAELLCKNDVTDGRAKYWVERA---------------AKLFPGSPAVYKLKEQL 143 (150)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH---------------HHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---------------HHhCcCCHHHHHHHHHH
Confidence 9999999999875 56 478899999999999999876654 4544 68899999999999998
Q ss_pred HHhcCC
Q 037537 530 YAASGK 535 (677)
Q Consensus 530 y~~~g~ 535 (677)
+...|+
T Consensus 144 l~~~G~ 149 (150)
T 4ga2_A 144 LDCEGE 149 (150)
T ss_dssp HHTCCC
T ss_pred HHHhCc
Confidence 888775
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.78 E-value=5.2e-08 Score=107.74 Aligned_cols=158 Identities=13% Similarity=0.188 Sum_probs=114.7
Q ss_pred hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 298 LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 298 ~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
..+|+.|-..|.+. |++++|++.|++..+. .|+. ..+++.|..
T Consensus 9 a~al~nLG~~~~~~-G~~~eAi~~~~kAl~l--~P~~----------------------------------~~a~~nLg~ 51 (723)
T 4gyw_A 9 ADSLNNLANIKREQ-GNIEEAVRLYRKALEV--FPEF----------------------------------AAAHSNLAS 51 (723)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CSCC----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCC----------------------------------HHHHHHHHH
Confidence 34566666677777 7777777777776653 3442 556677777
Q ss_pred HHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 453 (677)
.|.+.|++++|...|++..+ .+...|+.+...|...|++++|++.|++.++. .|+ ..++..+..++...|++++
T Consensus 52 ~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~e 129 (723)
T 4gyw_A 52 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPE 129 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 77777888888777776543 34567777888888888888888888888774 444 5677888888888888888
Q ss_pred HHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 454 GQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
|...|++..+. .|+ ...+..+..+|.+.|++++|.+.+++.
T Consensus 130 Ai~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 130 AIASYRTALKL---KPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 88888887764 554 667777888888888888888777654
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.76 E-value=3.8e-08 Score=96.06 Aligned_cols=180 Identities=19% Similarity=0.243 Sum_probs=133.8
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC-----------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE-----------HNTVSLNSMIAGYAQHGIGMEALRLFEWMLET------NI 431 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 431 (677)
..++..+...|...|++++|...|++..+ ....+|..+...|...|++++|++.|++..+. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 56778889999999999999999887642 13457888999999999999999999998864 11
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----CCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCC----
Q 037537 432 PPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMF-----GFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFN---- 500 (677)
Q Consensus 432 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 500 (677)
.|+ ..++..+...+...|++++|..+++.+.+.+ +-.| ....+..+..+|.+.|++++|.+.+++....
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 233 5678888889999999999999999987641 1123 3567888999999999999999999865210
Q ss_pred ------CChHH---------------------H---HHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 501 ------PGSIA---------------------L---KAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 501 ------~~~~~---------------------~---~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+.... . ...+.+....|....++..|+.+|...|++++|..++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00000 0 000011112355567899999999999999999999998765
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.73 E-value=3.1e-07 Score=88.81 Aligned_cols=186 Identities=11% Similarity=0.087 Sum_probs=142.6
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC--C-C---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE--H-N---TVSLNSMIAGYAQHGIGMEALRLFEWMLETNI-PPT-NITFVS 440 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~ 440 (677)
+..+-.+...+.+.|++++|...|+.+.+ | + ...|..+..+|.+.|++++|+..|++.++..- .|+ ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 56667788889999999999999998865 3 2 45688889999999999999999999998531 122 345666
Q ss_pred HHHHHhc--------cCCHHHHHHHHHHhHHhcCCccC-hHHH-----------------HHHHHHHhhcCChHHHHHHH
Q 037537 441 VLSACAH--------TGKVAEGQKYFSMMKDMFGFEPE-GEHY-----------------SCMIDLLGRAGKLTDAERLI 494 (677)
Q Consensus 441 ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~-~~~~-----------------~~li~~~~~~g~~~~A~~~~ 494 (677)
+..++.. .|++++|...|+.+.+. .|+ .... ..+...|.+.|++++|...|
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7777777 99999999999999976 343 2233 45678899999999999999
Q ss_pred HhCCCCCChHHHHHHHHHhccCCCC---chhHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCccCCceeEEE
Q 037537 495 EAMPFNPGSIALKAANHFLQLEPSN---AVPYVMLANIYAAS----------GKWEEVATIRRLMRDRGVQKKPGFSWIE 561 (677)
Q Consensus 495 ~~m~~~~~~~~~~~~~~l~~l~p~~---~~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~~~ 561 (677)
++. ++..|++ +..+..++.+|... |++++|...+++..+.- |
T Consensus 172 ~~~---------------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p-------- 226 (261)
T 3qky_A 172 EAV---------------FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--P-------- 226 (261)
T ss_dssp HHH---------------HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--T--------
T ss_pred HHH---------------HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--C--------
Confidence 876 3455553 45788899999876 99999999999987643 2
Q ss_pred ECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Q 037537 562 VKKQMHVFVAEDGSHPMIKEIHNYLEEMSRKMKQ 595 (677)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~ 595 (677)
.+|...+....+.++...+.+
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHH
Confidence 145556666667776666654
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.73 E-value=1.4e-07 Score=80.19 Aligned_cols=124 Identities=16% Similarity=0.230 Sum_probs=107.1
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAH 447 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 447 (677)
.+..+...|...|++++|..+|+++.+ .+...|..+...+...|++++|...|+++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 457788899999999999999988753 456788889999999999999999999999864 4557788888999999
Q ss_pred cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 448 TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 99999999999999875 2335778888999999999999999999876
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.72 E-value=4e-07 Score=89.70 Aligned_cols=166 Identities=8% Similarity=0.046 Sum_probs=114.4
Q ss_pred hhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHH
Q 037537 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAM 378 (677)
Q Consensus 299 ~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~ 378 (677)
.+|+.+...|.+. |++++|+..|++..... |+ .+ -......+++.+...
T Consensus 78 ~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~--~~-------------~g---------------~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 78 NTYVEAYKCFKSG-GNSVNAVDSLENAIQIF--TH-------------RG---------------QFRRGANFKFELGEI 126 (292)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH--HH-------------TT---------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH--HH-------------cC---------------CHHHHHHHHHHHHHH
Confidence 3566666667767 77788877777665421 00 00 000003466788889
Q ss_pred HHcc-CCHHHHHHHHhcCCC--C---C----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHH
Q 037537 379 YSKC-GNLEDARRLFDRMPE--H---N----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN------ITFVSVL 442 (677)
Q Consensus 379 y~k~-g~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll 442 (677)
|.+. |++++|...|++..+ | + ..+|+.+...|.+.|++++|+..|++..+....... .++..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 9996 999999999987654 1 1 346888999999999999999999999985422221 1567777
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCccChH------HHHHHHHHHh--hcCChHHHHHHHHhCC
Q 037537 443 SACAHTGKVAEGQKYFSMMKDMFGFEPEGE------HYSCMIDLLG--RAGKLTDAERLIEAMP 498 (677)
Q Consensus 443 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~------~~~~li~~~~--~~g~~~~A~~~~~~m~ 498 (677)
.++...|++++|...|+...+ +.|+.. .+..++..|. ..+++++|.+.|+++.
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 788899999999999999874 455422 2344556664 5678999999998874
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.70 E-value=1.4e-07 Score=93.07 Aligned_cols=206 Identities=12% Similarity=-0.000 Sum_probs=144.1
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHh
Q 037537 283 MRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKI 362 (677)
Q Consensus 283 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~ 362 (677)
+++|...|++. ...|... |++++|++.|.+........
T Consensus 33 ~~~A~~~~~~a-----------~~~~~~~-g~~~~A~~~~~~al~~~~~~------------------------------ 70 (292)
T 1qqe_A 33 FEEAADLCVQA-----------ATIYRLR-KELNLAGDSFLKAADYQKKA------------------------------ 70 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHT-TCTHHHHHHHHHHHHHHHHT------------------------------
T ss_pred HHHHHHHHHHH-----------HHHHHHc-CCHHHHHHHHHHHHHHHHHh------------------------------
Confidence 77777776654 3455666 88889988888775421000
Q ss_pred hcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC
Q 037537 363 EIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQH-GIGMEALRLFEWMLETNIP 432 (677)
Q Consensus 363 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~ 432 (677)
+-.+....+++.+...|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++.++..-.
T Consensus 71 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 71 GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence 00001145778889999999999999998887653 11 34788899999996 9999999999998873210
Q ss_pred -CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCc-cCh-----HHHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 037537 433 -PT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFE-PEG-----EHYSCMIDLLGRAGKLTDAERLIEAMPFNP 501 (677)
Q Consensus 433 -p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 501 (677)
.+ ..++..+...+...|++++|...|+...+. ... +.. ..|..+..++...|++++|...+++..
T Consensus 151 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--- 226 (292)
T 1qqe_A 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ--- 226 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG---
T ss_pred CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---
Confidence 11 346888889999999999999999999875 222 121 156778888999999999999999873
Q ss_pred ChHHHHHHHHHhccCCCCch-----hHHHHHHHHH--hcCChHHHHHHHHHH
Q 037537 502 GSIALKAANHFLQLEPSNAV-----PYVMLANIYA--ASGKWEEVATIRRLM 546 (677)
Q Consensus 502 ~~~~~~~~~~l~~l~p~~~~-----~~~~l~~~y~--~~g~~~~a~~~~~~m 546 (677)
+++|.... .+..++.+|. ..+++++|+..++++
T Consensus 227 ------------~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 227 ------------SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp ------------CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred ------------hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 44444332 3445666665 457788888888654
No 92
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.66 E-value=3.3e-07 Score=82.61 Aligned_cols=160 Identities=11% Similarity=-0.026 Sum_probs=123.5
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSA- 444 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a- 444 (677)
......+...+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++.... .|+..........
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLE 83 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHH
Confidence 34456677888999999999999999886 45678999999999999999999999998764 3454333222111
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCC--ch
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSN--AV 521 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~--~~ 521 (677)
+...+...++...++...+. .| +...+..+...|.+.|++++|.+.++++ ++.+|+. +.
T Consensus 84 ~~~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~---------------l~~~p~~~~~~ 145 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNI---------------LKVNLGAQDGE 145 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTCTTTTTTH
T ss_pred HHhhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHH---------------HHhCcccChHH
Confidence 12222333568888888764 56 4788899999999999999999999876 4556643 56
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 522 PYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 522 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+..+..+|...|+.++|...+++...
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 899999999999999999999887643
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.66 E-value=1.6e-07 Score=104.25 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=123.8
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++.++.. +-+...+..+..++
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATA 511 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 56677888899999999999999998765 366789999999999999999999999999853 33467888899999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHH
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYV 524 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~ 524 (677)
...|++++ ...|+.+.+. .| +...|..+..+|.+.|++++|.+.+++.. +++|.+..+|.
T Consensus 512 ~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---------------~l~P~~~~a~~ 572 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVRTLDEVP---------------PTSRHFTTARL 572 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSC---------------TTSTTHHHHHH
T ss_pred HHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------------ccCcccHHHHH
Confidence 99999999 9999999865 45 46788999999999999999999999884 67788888999
Q ss_pred HHHHHHHhcCC
Q 037537 525 MLANIYAASGK 535 (677)
Q Consensus 525 ~l~~~y~~~g~ 535 (677)
.+..+|...|+
T Consensus 573 ~~~~~~~~~~~ 583 (681)
T 2pzi_A 573 TSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTC----
T ss_pred HHHHHHHccCC
Confidence 99999877665
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.63 E-value=2.4e-06 Score=82.90 Aligned_cols=173 Identities=13% Similarity=0.081 Sum_probs=121.5
Q ss_pred HHHHHhhCC---CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHh
Q 037537 286 CMKVFEEIP---QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKI 362 (677)
Q Consensus 286 A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~ 362 (677)
|...|++.. .++..++..+..++... |++++|++++.+.+..|-.++.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~-g~~eeAL~~l~~~i~~~~~~~~---------------------------- 135 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAIL-GDLDKSLETCVEGIDNDEAEGT---------------------------- 135 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTSSCSTTH----------------------------
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCCcCc----------------------------
Confidence 455566554 24555566777778888 9999999999887654322221
Q ss_pred hcccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCC-------cchHHHHHHH--HHHcC--ChHHHHHHHHHHHHCCC
Q 037537 363 EIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHN-------TVSLNSMIAG--YAQHG--IGMEALRLFEWMLETNI 431 (677)
Q Consensus 363 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~-------~~~~~~li~~--~~~~g--~~~~A~~l~~~m~~~g~ 431 (677)
...+..++..|.+.|+.+.|.+.+++|.+.+ -.+...+..+ ....| +..+|..+|+++.+.
T Consensus 136 ------lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-- 207 (310)
T 3mv2_B 136 ------TELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-- 207 (310)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--
T ss_pred ------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--
Confidence 5566778899999999999999999887533 3455566666 33344 899999999999764
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-CC------cc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 432 PPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMF-GF------EP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 432 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.|+..+-..++.++.+.|++++|.+.++.+.+.+ .+ .| +..+...+|......|+ +|.++++++
T Consensus 208 ~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 208 FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 4664444556668899999999999999776542 00 24 46666566666666676 777777766
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.62 E-value=3.8e-07 Score=99.25 Aligned_cols=158 Identities=11% Similarity=0.038 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHH
Q 037537 349 PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEW 425 (677)
Q Consensus 349 ~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 425 (677)
.+.+...+...++. .|+....+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++
T Consensus 5 ~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 5 GPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444444444332 334366677777777777777777777776544 2455677777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhc---CChHHHHHHHHhCCCCC
Q 037537 426 MLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRA---GKLTDAERLIEAMPFNP 501 (677)
Q Consensus 426 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~ 501 (677)
..+.. +.+...+..+...+...|++++|.+.++...+. .| +...+..+..+|.+. |+.++|.+.+++.
T Consensus 83 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a---- 154 (568)
T 2vsy_A 83 ASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA---- 154 (568)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH----
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH----
Confidence 77643 334567777777777777777777777777654 33 356667777777777 7777777777655
Q ss_pred ChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 502 GSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 502 ~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
++.+|.+...|..+.
T Consensus 155 -----------l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 -----------VAQGVGAVEPFAFLS 169 (568)
T ss_dssp -----------HHHTCCCSCHHHHTT
T ss_pred -----------HhcCCcccChHHHhC
Confidence 567777776666654
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.61 E-value=7e-07 Score=84.11 Aligned_cols=161 Identities=12% Similarity=0.078 Sum_probs=122.0
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCC--CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHH
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPE--HN----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN----ITFV 439 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~ 439 (677)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++.++. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3455667778889999999999998764 33 236778889999999999999999999884 3442 1333
Q ss_pred HHHHHHh------------------ccCCHHHHHHHHHHhHHhcCCccCh-HHH-----------------HHHHHHHhh
Q 037537 440 SVLSACA------------------HTGKVAEGQKYFSMMKDMFGFEPEG-EHY-----------------SCMIDLLGR 483 (677)
Q Consensus 440 ~ll~a~~------------------~~g~~~~a~~~~~~m~~~~~~~p~~-~~~-----------------~~li~~~~~ 483 (677)
.+..++. ..|+.++|...|+.+.+. .|+. ..+ ..+...|.+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 367899999999999865 3442 222 245667889
Q ss_pred cCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 484 AGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNA---VPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 484 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
.|++++|...|+++ ++..|+++ .++..+..+|.+.|++++|.+.++.+...+
T Consensus 160 ~~~~~~A~~~~~~~---------------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 160 RGAWVAVVNRVEGM---------------LRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HTCHHHHHHHHHHH---------------HHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred cCcHHHHHHHHHHH---------------HHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 99999999999876 45566654 568999999999999999999999988765
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.59 E-value=3.6e-07 Score=88.36 Aligned_cols=165 Identities=10% Similarity=0.040 Sum_probs=108.8
Q ss_pred ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHH
Q 037537 297 DLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALV 376 (677)
Q Consensus 297 ~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li 376 (677)
+...+-.+...+.+. |++++|+..|+++... .|+.... ..++..+.
T Consensus 14 ~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~--~p~~~~~-------------------------------~~a~~~lg 59 (261)
T 3qky_A 14 SPQEAFERAMEFYNQ-GKYDRAIEYFKAVFTY--GRTHEWA-------------------------------ADAQFYLA 59 (261)
T ss_dssp SHHHHHHHHHHHHHT-TCHHHHHHHHHHHGGG--CSCSTTH-------------------------------HHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHh--CCCCcch-------------------------------HHHHHHHH
Confidence 344455555556666 7777777777777664 2433221 33445566
Q ss_pred HHHHccCCHHHHHHHHhcCCC--CC----cchHHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCC-HHHH---
Q 037537 377 AMYSKCGNLEDARRLFDRMPE--HN----TVSLNSMIAGYAQ--------HGIGMEALRLFEWMLETNIPPT-NITF--- 438 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~-~~t~--- 438 (677)
..|.+.|++++|...|++..+ |+ ...+..+..++.. .|++++|+..|++.++. .|+ ....
T Consensus 60 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 137 (261)
T 3qky_A 60 RAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT 137 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH
Confidence 667777777777777776543 21 2345566666766 78888888888887774 343 2222
Q ss_pred --------------HHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhc----------CChHHHHHH
Q 037537 439 --------------VSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRA----------GKLTDAERL 493 (677)
Q Consensus 439 --------------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~----------g~~~~A~~~ 493 (677)
..+...+...|++++|...|+.+.+.+.-.| ....+..+..+|.+. |++++|.+.
T Consensus 138 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~ 217 (261)
T 3qky_A 138 QKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVEL 217 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHH
Confidence 4556778899999999999999987622222 245677778888766 889999999
Q ss_pred HHhC
Q 037537 494 IEAM 497 (677)
Q Consensus 494 ~~~m 497 (677)
+++.
T Consensus 218 ~~~~ 221 (261)
T 3qky_A 218 YERL 221 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.57 E-value=3.5e-07 Score=89.84 Aligned_cols=159 Identities=11% Similarity=0.010 Sum_probs=128.0
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITF-VSVLSA 444 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a 444 (677)
......+...+.+.|++++|...|++..+ .+...+..+...|.+.|++++|...+++.... .|+.... ......
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHH
Confidence 55667778888899999999999998754 35668888999999999999999999998774 4664432 222333
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCC--ch
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSN--AV 521 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~--~~ 521 (677)
+...+..++|...++...+. .| +...+..+..+|.+.|++++|.+.++++ ++.+|++ ..
T Consensus 195 l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~---------------l~~~p~~~~~~ 256 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGH---------------LRXDLTAADGQ 256 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTGGGGH
T ss_pred HHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHH---------------Hhcccccccch
Confidence 56777788888888888865 45 5788889999999999999999999877 4667776 78
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 522 PYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 522 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
.+..|+.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999988877643
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.55 E-value=4.7e-07 Score=88.13 Aligned_cols=211 Identities=15% Similarity=0.184 Sum_probs=113.6
Q ss_pred HHHHHHHHhhCCCCC----hhhHHHHHhhhcccCCCHHHHHHHHHHHhhc------CCCCC-cchHHHHHHHhhccC-hh
Q 037537 283 MRDCMKVFEEIPQPD----LVLWNTMISGYSQKEEYSDQALGCFKKLNRV------GYHPD-DCSFVCVISACSNLS-PS 350 (677)
Q Consensus 283 ~~~A~~~f~~~~~~~----~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~~-~~ 350 (677)
+++|.++++++..++ ..+|..+...|... |++++|+..|.+.... +-.|+ ..++..+-..+...+ .+
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 102 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 102 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHH
Confidence 666666666654333 45788888889888 9999999999988764 11222 223444444455555 66
Q ss_pred HHHHHHHHHHHhh------cccCccchhHHHHHHHHccCCHHHHHHHHhcCCCC-----------CcchHHHHHHHHHHc
Q 037537 351 LGKQIHALTIKIE------IRSNRISVNNALVAMYSKCGNLEDARRLFDRMPEH-----------NTVSLNSMIAGYAQH 413 (677)
Q Consensus 351 ~~~~i~~~~~~~~------~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~ 413 (677)
.+...+...++.. ..+....++..+...|...|++++|...|++..+. ...++..+...|...
T Consensus 103 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (283)
T 3edt_B 103 EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ 182 (283)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 6666555555431 11222445555666666666666666655544221 123455555666666
Q ss_pred CChHHHHHHHHHHHHC-------CCCCCHH-HHHHHHHHHhccC------CHHHHHHHHHHhHHhcCCcc-ChHHHHHHH
Q 037537 414 GIGMEALRLFEWMLET-------NIPPTNI-TFVSVLSACAHTG------KVAEGQKYFSMMKDMFGFEP-EGEHYSCMI 478 (677)
Q Consensus 414 g~~~~A~~l~~~m~~~-------g~~p~~~-t~~~ll~a~~~~g------~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 478 (677)
|++++|+..|++..+. ...|... .+..+.......+ .+.++...++... ...| ....+..+.
T Consensus 183 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~la 259 (283)
T 3edt_B 183 GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK---VDSPTVNTTLRSLG 259 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC---CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHH
Confidence 6666666666665542 1122211 1221111111111 1222222222111 0112 355788899
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 037537 479 DLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m 497 (677)
.+|.+.|++++|.+++++.
T Consensus 260 ~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 260 ALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999875
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.55 E-value=6e-07 Score=87.05 Aligned_cols=165 Identities=10% Similarity=0.031 Sum_probs=122.4
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCCC-----CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHH
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPEH-----NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPP-----TNITFVSVL 442 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~t~~~ll 442 (677)
..+...|...|++++|.+++.+.... +...+-.++..|.+.|+.+.|.+.+++|.+ ..| +..+...+.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHHHHHH
Confidence 46678888899999999999987443 345677788999999999999999999988 467 366667777
Q ss_pred HHH--hccC--CHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCC-CChHHHHHHHHHhccCC
Q 037537 443 SAC--AHTG--KVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFN-PGSIALKAANHFLQLEP 517 (677)
Q Consensus 443 ~a~--~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~l~~l~p 517 (677)
.++ ...| +..+|..+|+++.+. .|+......+..++.+.|++++|++.++.+... |+.. .--..+|
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~------~k~~~~p 252 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVE------QKENAVL 252 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTT------TCHHHHS
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc------ccccCCC
Confidence 663 3334 899999999999865 455333344445889999999999999865210 0000 0000147
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 518 SNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 518 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
+|+.+...++..+...|+ +|.++++++++..
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 888888888888888887 8999999998854
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.51 E-value=3.1e-06 Score=82.95 Aligned_cols=172 Identities=10% Similarity=0.064 Sum_probs=131.1
Q ss_pred HHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhc
Q 037537 285 DCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEI 364 (677)
Q Consensus 285 ~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~ 364 (677)
.....++.....+...+..+...+.+. |++++|...|++.... .|+.
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~--~P~~------------------------------ 150 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQE-SNYTDALPLLXDAWQL--SNQN------------------------------ 150 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--TTSC------------------------------
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhC-CCHHHHHHHHHHHHHh--CCcc------------------------------
Confidence 333344443334444555666667777 8899999998888764 3443
Q ss_pred ccCccchhHHHHHHHHccCCHHHHHHHHhcCCC--CCcchH-HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037537 365 RSNRISVNNALVAMYSKCGNLEDARRLFDRMPE--HNTVSL-NSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSV 441 (677)
Q Consensus 365 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 441 (677)
..++..+...|.+.|++++|...|++... |+...+ ......+.+.++.++|+..|++..+.. +.+...+..+
T Consensus 151 ----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~l 225 (287)
T 3qou_A 151 ----GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQL 225 (287)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHH
Confidence 56678888999999999999999999876 433322 223334677888999999999999864 4457888999
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCccC---hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 442 LSACAHTGKVAEGQKYFSMMKDMFGFEPE---GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
...+...|++++|...+..+.+. .|+ ...+..++.+|...|+.++|...+++.
T Consensus 226 a~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 226 ALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 99999999999999999999976 443 678899999999999999999888753
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.50 E-value=3.7e-07 Score=101.27 Aligned_cols=149 Identities=12% Similarity=-0.027 Sum_probs=129.6
Q ss_pred HccCCHHHHHHHHhcCC--------C---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 037537 380 SKCGNLEDARRLFDRMP--------E---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHT 448 (677)
Q Consensus 380 ~k~g~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 448 (677)
...|++++|.+.|++.. + .+...|..+...|.+.|++++|++.|++.++.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999998775 2 456688999999999999999999999999853 44577888899999999
Q ss_pred CCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 449 GKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 449 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
|++++|...|+...+. .| +...|..+..+|.+.|++++ .+.+++. ++++|+++.+|..+.
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a---------------l~~~P~~~~a~~~lg 541 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTV---------------WSTNDGVISAAFGLA 541 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHH---------------HHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHH---------------HHhCCchHHHHHHHH
Confidence 9999999999999875 55 57788899999999999998 8887765 688999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 037537 528 NIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 528 ~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+|.+.|++++|.+.+++..+
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHcCCHHHHHHHHHhhcc
Confidence 999999999999999987654
No 103
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.50 E-value=1.4e-06 Score=80.97 Aligned_cols=141 Identities=14% Similarity=0.000 Sum_probs=80.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhh
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGR 483 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 483 (677)
..+...+...|++++|+..|++. +.|+...+..+...+...|++++|...|+...+. -+.+...+..+..+|.+
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHH
Confidence 33444555556666666555544 2445555555556666666666666666665543 12234556666666666
Q ss_pred cCChHHHHHHHHhCCC-CCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 484 AGKLTDAERLIEAMPF-NPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 484 ~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
.|++++|.+.+++... .|+..............|.....|..++.+|...|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 6666666666665410 000000000000001223334889999999999999999999999987754
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.48 E-value=3.7e-06 Score=75.61 Aligned_cols=153 Identities=11% Similarity=0.068 Sum_probs=89.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHhccCCC--CCcchHHHHHH-H-HHh
Q 037537 36 LSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLFDQIPQ--PDLVSYNTLIS-A-YAD 108 (677)
Q Consensus 36 ~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~-~-~~~ 108 (677)
.+..+...+.+.|++++|...+++..+ .+...+..+...|.+.|++++|...|+.... |+.. +..+.. . +.+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNS-YKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChH-HHHHHHHHHHHh
Confidence 444555666677777777777777666 4455666777777777777777777777654 3222 222111 1 112
Q ss_pred CCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHh
Q 037537 109 CGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFY 188 (677)
Q Consensus 109 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 188 (677)
.+...+|+..|++..+. . +.+...+..+...|...|++++|...|+
T Consensus 87 ~~~~~~a~~~~~~al~~--~--------------------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--N--------------------------------PDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--S--------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHh--C--------------------------------CCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 12223345555544432 1 2234455666667777777777777777
Q ss_pred hc-CCCCC---eeeHHHHHHHHHhCCCchHHHHHHHHHH
Q 037537 189 EM-GEIKD---EVSWNSMVVAYGQHREGLEALQLFQEMV 223 (677)
Q Consensus 189 ~m-~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 223 (677)
++ ...|+ ...|..+...+...|+.++|...|++..
T Consensus 133 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 133 NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 76 22332 3467777777777777777777776654
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.47 E-value=2e-06 Score=72.39 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDL 480 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 480 (677)
.|......|.+.|++++|++.|++.++.. +.+..+|..+..++...|++++|...|+...+. .| +...|..+..+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL---DSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hhhhhHHHHHHHHH
Confidence 46667788888899999999998888753 445778888888888999999999999988864 44 46778888889
Q ss_pred HhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHH
Q 037537 481 LGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANI 529 (677)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~ 529 (677)
|.+.|++++|.+.|++. ++++|+++.++..|.++
T Consensus 91 ~~~~~~~~~A~~~~~~a---------------l~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDA---------------LQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH---------------HHHCcCCHHHHHHHHHh
Confidence 99999999999988866 57888888777766553
No 106
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.47 E-value=2.7e-06 Score=75.25 Aligned_cols=130 Identities=15% Similarity=0.078 Sum_probs=104.3
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHH
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL 480 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 480 (677)
..|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...++...+. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 457777888888999999999999988753 445778888888889999999999999998875 22356788888999
Q ss_pred HhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH--HHHHhcCChHHHHHHHHHHHh
Q 037537 481 LGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA--NIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~--~~y~~~g~~~~a~~~~~~m~~ 548 (677)
|.+.|++++|.+.+++. +++.|.+...+..+. ..+...|++++|.+.+....+
T Consensus 91 ~~~~~~~~~A~~~~~~a---------------~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETV---------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999876 466777777775444 448888999999999887653
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.46 E-value=7.2e-06 Score=76.13 Aligned_cols=126 Identities=10% Similarity=-0.008 Sum_probs=108.6
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGK 450 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 450 (677)
.+..+...|.+.|++++|...|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+...+...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345677788899999999999999988888999999999999999999999999999864 4457789999999999999
Q ss_pred HHHHHHHHHHhHHhcC-------------Ccc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 451 VAEGQKYFSMMKDMFG-------------FEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 451 ~~~a~~~~~~m~~~~~-------------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+++|...|+...+... ..| ....+..+..+|.+.|++++|.+.+++.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999987411 112 2367888999999999999999999876
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.46 E-value=3.4e-05 Score=81.62 Aligned_cols=125 Identities=13% Similarity=-0.053 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHhHHhcCCccChHHHHHHHH
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACA-HTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID 479 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 479 (677)
..|...+..+.+++..+.|..+|++. +.. .++...|......-. ..++.+.|+.+|+...+.++- +...+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 45777777777788899999999999 321 223344432222112 234799999999999987432 3455677888
Q ss_pred HHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 480 LLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
...+.|+.+.|..+|++.. .....|...+..=...|+.+.+.++++++.+
T Consensus 363 ~e~~~~~~~~aR~l~er~~-------------------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE-------------------KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC-------------------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999984 2346688888877888999999998887764
No 109
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.45 E-value=3.2e-06 Score=70.45 Aligned_cols=117 Identities=19% Similarity=0.256 Sum_probs=92.0
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID 479 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 479 (677)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 4567778888888899999999998888753 445677888888888899999999999888865 2335677888888
Q ss_pred HHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 037537 480 LLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASG 534 (677)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g 534 (677)
.|.+.|++++|.+.++++ ++..|.++..+..+..++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKA---------------LELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHH---------------HHhCCCcHHHHHHHHHHHHhcc
Confidence 899999999999988876 4667777788888777776544
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.45 E-value=4.2e-05 Score=80.90 Aligned_cols=363 Identities=9% Similarity=-0.014 Sum_probs=178.6
Q ss_pred CC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc--cChhHHHHHHHHHHhcCC-hhHHHHH
Q 037537 12 RR-DLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH--ANVFSFNVLLAAYARQLR-IASARQL 87 (677)
Q Consensus 12 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~ 87 (677)
.| ++..|+.+++..+..- |. |+++.+..+|++... |++..|...+..-.+.++ .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 35 3677777777777653 22 889999999999888 888899988888777663 3445566
Q ss_pred hccCC------CCCcchHHHHHHHHH----hCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHH
Q 037537 88 FDQIP------QPDLVSYNTLISAYA----DCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIY 157 (677)
Q Consensus 88 f~~m~------~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~ 157 (677)
|+... ..+...|...+..+. .+++.+.+..+|++.... |.. .+..+...+..-..
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~----------- 135 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFENFEL----------- 135 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHH-----------
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHH-----------
Confidence 65533 135577887777654 245678899999998863 321 12222222211100
Q ss_pred hCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-C--CCCCeeeHHHHHHHHHhCCC-------chHHHHHHHHHHHCCC
Q 037537 158 CGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-G--EIKDEVSWNSMVVAYGQHRE-------GLEALQLFQEMVSLQL 227 (677)
Q Consensus 158 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~--~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~ 227 (677)
. .+..+...++.-+. +.+..|+.+++.+ . ...+...|...+.---.++. .+.+..+|++++...
T Consensus 136 ~---~~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~- 209 (493)
T 2uy1_A 136 E---LNKITGKKIVGDTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF- 209 (493)
T ss_dssp H---HCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred H---hccccHHHHHHHHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-
Confidence 0 00001111111111 1223333333333 0 00122345444443222211 234556777766532
Q ss_pred CCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHH-HHHHHhhCC------------
Q 037537 228 GLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRD-CMKVFEEIP------------ 294 (677)
Q Consensus 228 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~-A~~~f~~~~------------ 294 (677)
+.+...|...+.-+...|+++.|..+++..++. +.+...+. .|+.... .++ ...+.+...
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e-~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD-EEAVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT-CTHHHHHHHHHTC----------CH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc-hhHHHHHHHHHHHhhccchhhhhcc
Confidence 234555666666666677777777777777776 33333332 2222111 111 111111110
Q ss_pred CCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHH-H---hhccC-hhHHHHHHHHHHHhhcccCcc
Q 037537 295 QPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVIS-A---CSNLS-PSLGKQIHALTIKIEIRSNRI 369 (677)
Q Consensus 295 ~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a---~~~~~-~~~~~~i~~~~~~~~~~~~~~ 369 (677)
......|-..+....+. +..+.|..+|.+. . .|. .++...+. | ....+ .+.++.++...++.- |+.+
T Consensus 283 ~~~~~lw~~y~~~~~r~-~~~~~AR~i~~~A-~---~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~ 354 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKK-RGLELFRKLFIEL-G---NEG-VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDST 354 (493)
T ss_dssp HHHHHHHHHHHHHHHHH-HCHHHHHHHHHHH-T---TSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCH
T ss_pred cccHHHHHHHHHHHHHc-CCHHHHHHHHHHh-h---CCC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCH
Confidence 01123455556555556 6677788888777 2 122 12221111 0 00112 455555555555532 1213
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWML 427 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 427 (677)
..+...++...+.|+.+.|+.+|+++.+ ....|...+.--..+|+.+.+.++++++.
T Consensus 355 ~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 355 LLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555655666666666666666532 33445555544445555555555555544
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.44 E-value=1.8e-07 Score=81.86 Aligned_cols=122 Identities=8% Similarity=-0.014 Sum_probs=101.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhc
Q 037537 407 IAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRA 484 (677)
Q Consensus 407 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~ 484 (677)
...+...|++++|++.++..... .|+ ...+..+...|...|++++|.+.|+...+. .| +...|..+..+|.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Confidence 34455678899999999988663 344 456777888999999999999999999875 55 578899999999999
Q ss_pred CChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHH-HHHHHh
Q 037537 485 GKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATI-RRLMRD 548 (677)
Q Consensus 485 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~-~~~m~~ 548 (677)
|++++|...|++. ++++|+++.+|..++.+|.+.|++++|.+. +++..+
T Consensus 79 ~~~~~A~~~~~~a---------------l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 79 ENTDKAVECYRRS---------------VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp TCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred CchHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999876 688999999999999999999999887765 466655
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.43 E-value=1.7e-06 Score=75.30 Aligned_cols=101 Identities=10% Similarity=0.073 Sum_probs=80.2
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHH
Q 037537 432 PPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAA 509 (677)
Q Consensus 432 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 509 (677)
.|+ ...+..+...+.+.|++++|...|+.+.+. .| +...|..+..+|.+.|++++|.+.|++.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a------------ 96 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVA------------ 96 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHH------------
Confidence 444 345666677778888888888888888764 45 4677888888888888988888888866
Q ss_pred HHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 510 NHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 510 ~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
++++|+++.+|..+..+|...|++++|...|++..+..
T Consensus 97 ---l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 97 ---FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ---HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 57888888899999999999999999999888887643
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.42 E-value=1.1e-06 Score=87.38 Aligned_cols=128 Identities=9% Similarity=-0.002 Sum_probs=85.5
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC-------CC--cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE-------HN--TVSLNSMIAGYAQHGIGMEALRLFEWMLETNI---PPT-- 434 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~-- 434 (677)
...++.+...|.+.|++++|...|++..+ +. ..+|+.+...|.. |++++|+..|++.++..- .+.
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 34556666777777777777666654321 11 2456777777877 888888888888765210 111
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCccC-hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 435 NITFVSVLSACAHTGKVAEGQKYFSMMKDMF---GFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 435 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..++..+...+...|++++|...|+...+.. +..+. ...+..++..+...|++++|...+++.
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567777888888899999998888887642 11111 235666677777889999999988875
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.41 E-value=6.4e-06 Score=76.61 Aligned_cols=160 Identities=8% Similarity=0.002 Sum_probs=132.4
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC-CCcchHHHHHHHHHHcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE-HNTVSLNSMIAGYAQHG----IGMEALRLFEWMLETNIPPTNITFVSVLS 443 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 443 (677)
+..+..|..+|...+++++|...|++..+ .++..+..|...|.. + +.++|++.|++..+.| +..++..+-.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 66778888999999999999999998765 466788888888887 6 8999999999998865 5667777777
Q ss_pred HHhc----cCCHHHHHHHHHHhHHhcCCccC---hHHHHHHHHHHhh----cCChHHHHHHHHhCCCCCChHHHHHHHHH
Q 037537 444 ACAH----TGKVAEGQKYFSMMKDMFGFEPE---GEHYSCMIDLLGR----AGKLTDAERLIEAMPFNPGSIALKAANHF 512 (677)
Q Consensus 444 a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 512 (677)
.+.. .+++++|..+|+...+. .|+ ...+..|..+|.. .+++++|.++|++..
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-------------- 156 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS-------------- 156 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--------------
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--------------
Confidence 7877 88999999999999864 343 6778888888888 889999999998763
Q ss_pred hccCCCCchhHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 037537 513 LQLEPSNAVPYVMLANIYAAS-G-----KWEEVATIRRLMRDRGV 551 (677)
Q Consensus 513 ~~l~p~~~~~~~~l~~~y~~~-g-----~~~~a~~~~~~m~~~g~ 551 (677)
++ |.++.++..|..+|... | ++++|...+++..+.|.
T Consensus 157 -~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 -SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp -HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred -Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 33 45667899999999864 3 89999999999988774
No 115
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.40 E-value=3.8e-06 Score=70.99 Aligned_cols=119 Identities=12% Similarity=0.003 Sum_probs=98.7
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHH
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMI 478 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 478 (677)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 45578888899999999999999999998853 345778888888999999999999999999875 223577888899
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 037537 479 DLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGK 535 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~ 535 (677)
.+|.+.|++++|.+.+++. ++++|.+...+..+..+|...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~---------------~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKA---------------LDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHH---------------HHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHH---------------HHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999876 46677888888888888877664
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.40 E-value=2.2e-06 Score=93.15 Aligned_cols=147 Identities=9% Similarity=0.017 Sum_probs=108.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCCc-chHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHH
Q 037537 313 EYSDQALGCFKKLNRVGYHPDD-CSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARR 390 (677)
Q Consensus 313 ~~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 390 (677)
|++++|++.|++..+. .|+. ..+..+-..+...+ .+.+...+...++. .|+....+..+...|.+.|++++|.+
T Consensus 3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 7789999999988764 4553 45555666677788 99999998888775 44547889999999999999999999
Q ss_pred HHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHhHHh
Q 037537 391 LFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHT---GKVAEGQKYFSMMKDM 464 (677)
Q Consensus 391 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---g~~~~a~~~~~~m~~~ 464 (677)
.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+...+... |+.++|.+.++...+.
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998754 456789999999999999999999999999853 34577888889999999 9999999999999876
No 117
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.39 E-value=3.7e-06 Score=70.71 Aligned_cols=120 Identities=16% Similarity=0.070 Sum_probs=97.4
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHH
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMI 478 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 478 (677)
+...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+. .+.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence 34567778888888999999999999988753 445777888888888999999999999998875 223467788888
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCh
Q 037537 479 DLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKW 536 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~ 536 (677)
..|.+.|++++|.+.+++. +++.|.++..+..+..++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~---------------~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKA---------------LELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHH---------------HhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999998876 466788888899999888888775
No 118
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.36 E-value=1.6e-06 Score=75.52 Aligned_cols=97 Identities=9% Similarity=0.005 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHh
Q 037537 435 NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFL 513 (677)
Q Consensus 435 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 513 (677)
...+..+...+...|++++|...|+.+.+. .| +...|..+..+|.+.|++++|.+.+++. +
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l 82 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYG---------------A 82 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------H
Confidence 445666667777888888888888887764 34 5667777888888888888888888765 5
Q ss_pred ccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 514 QLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 514 ~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 83 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 83 VMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 677888888888888888888888888888887653
No 119
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.36 E-value=6.8e-07 Score=82.29 Aligned_cols=161 Identities=10% Similarity=-0.040 Sum_probs=110.8
Q ss_pred hHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------------
Q 037537 372 NNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN------------- 435 (677)
Q Consensus 372 ~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------------- 435 (677)
.+..+......|++++|.+.++.-.+ .....|..+...+...|++++|+..|++.++.. +.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHH
T ss_pred ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHH
Confidence 34455556667788888888775443 244568888889999999999999999999843 1122
Q ss_pred ---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHH
Q 037537 436 ---ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHF 512 (677)
Q Consensus 436 ---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 512 (677)
..+..+..++...|++++|...++...+. -+.+...+..+..+|.+.|++++|.+.|++.
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a--------------- 148 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKA--------------- 148 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHH---------------
Confidence 67888888899999999999999999875 2335778889999999999999999999876
Q ss_pred hccCCCCchhHHHHHHHHHhcCChHHHH-HHHHHHHhCC
Q 037537 513 LQLEPSNAVPYVMLANIYAASGKWEEVA-TIRRLMRDRG 550 (677)
Q Consensus 513 ~~l~p~~~~~~~~l~~~y~~~g~~~~a~-~~~~~m~~~g 550 (677)
++++|.++..+..+..++...|+.+++. ..++.|-..|
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5778999999999999999888888776 5555554443
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.34 E-value=1.3e-05 Score=78.83 Aligned_cols=166 Identities=8% Similarity=-0.083 Sum_probs=120.8
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCCC-----Cc---c-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHH
Q 037537 374 ALVAMYSKCGNLEDARRLFDRMPEH-----NT---V-SLNSMIAGYAQHGIGMEALRLFEWMLETNIP-PT----NITFV 439 (677)
Q Consensus 374 ~li~~y~k~g~~~~A~~~~~~~~~~-----~~---~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~ 439 (677)
..+..+.+.|++++|...++...+. +. . .+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788999999999999886542 11 1 2334666677788999999999999984322 23 23688
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhc----CCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 440 SVLSACAHTGKVAEGQKYFSMMKDMF----GFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 440 ~ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
.+...+...|++++|..+|+.+.+.. +..+. ..+|..+...|.+.|++++|.+.+++... .... ..
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~--------~~~~-~~ 230 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE--------ISCR-IN 230 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHHH-TT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------HHHH-cC
Confidence 89999999999999999999988532 11222 34788899999999999999999987520 0000 01
Q ss_pred cCCCCchhHHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 037537 515 LEPSNAVPYVMLANIYAASGK-WEEVATIRRLMRD 548 (677)
Q Consensus 515 l~p~~~~~~~~l~~~y~~~g~-~~~a~~~~~~m~~ 548 (677)
..+.-+.+|..++.+|...|+ +++|.+.+++...
T Consensus 231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 112225689999999999995 6999998887753
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.34 E-value=3e-06 Score=84.06 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=117.8
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHH
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNI---PPT--NITF 438 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~ 438 (677)
+.....|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|+..|++.++.-. .|. ..++
T Consensus 40 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~ 119 (307)
T 2ifu_A 40 AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMAL 119 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4445566777888888777765532 11 34788889999999999999999998765311 222 3567
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCcc----ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 439 VSVLSACAHTGKVAEGQKYFSMMKDMFGFEP----EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 439 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
..+...+.. |++++|...|+...+.+.-.. ...++..+...|.+.|++++|.+.+++.. +
T Consensus 120 ~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---------------~ 183 (307)
T 2ifu_A 120 DRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK---------------S 183 (307)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------H
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------H
Confidence 788888888 999999999999886521111 14678888999999999999999998762 2
Q ss_pred cCCCC------chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 515 LEPSN------AVPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 515 l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
+.|.+ ...+..++.+|...|++++|...+++..
T Consensus 184 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 21211 2367778888899999999999999876
No 122
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.31 E-value=4.4e-06 Score=83.97 Aligned_cols=144 Identities=12% Similarity=0.044 Sum_probs=115.2
Q ss_pred CHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHH
Q 037537 384 NLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT----------------NITFVSVLSA 444 (677)
Q Consensus 384 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~a 444 (677)
++++|...|+...+ .+...|..+...|.+.|++++|+..|++.++. .|+ ..++..+..+
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444332 23456788888899999999999999998884 344 3788888899
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhH
Q 037537 445 CAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPY 523 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~ 523 (677)
+...|++++|...++.+.+. .| +...|..+..+|.+.|++++|.+.|++. ++++|.+..++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a---------------l~l~P~~~~a~ 267 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKV---------------LQLYPNNKAAK 267 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCSSCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------HHHCCCCHHHH
Confidence 99999999999999999875 44 5778889999999999999999999876 68889999999
Q ss_pred HHHHHHHHhcCChHHH-HHHHHHHH
Q 037537 524 VMLANIYAASGKWEEV-ATIRRLMR 547 (677)
Q Consensus 524 ~~l~~~y~~~g~~~~a-~~~~~~m~ 547 (677)
..+..+|...|++++| ..+++.|.
T Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 268 TQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 44566553
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.31 E-value=4.7e-06 Score=70.12 Aligned_cols=101 Identities=13% Similarity=0.111 Sum_probs=89.1
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHH
Q 037537 431 IPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKA 508 (677)
Q Consensus 431 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 508 (677)
+.|+ ...+......+.+.|++++|...|+...+. .| +...|..+..+|.+.|++++|++.+++.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a----------- 73 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTC----------- 73 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHH-----------
Confidence 4555 356777888999999999999999999875 45 5788999999999999999999999876
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 509 ANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 509 ~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 74 ----l~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 74 ----IRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp ----HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999998764
No 124
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.30 E-value=3.1e-06 Score=78.54 Aligned_cols=154 Identities=13% Similarity=0.070 Sum_probs=90.5
Q ss_pred HHHHccCChHHHHHHHhhccc--c-ChhHHHH----------------HHHHHHhcCChhHHHHHhccCCC--C-CcchH
Q 037537 42 LLYSKCGCLSAAHHAFNQTQH--A-NVFSFNV----------------LLAAYARQLRIASARQLFDQIPQ--P-DLVSY 99 (677)
Q Consensus 42 ~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~ 99 (677)
..+...|++++|...|++... | ++..+.. +...|.+.|++++|...|+...+ | +...|
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 91 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCL 91 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 334455566666666655554 1 1222333 77777788888888888877653 3 56677
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-
Q 037537 100 NTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNG- 178 (677)
Q Consensus 100 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g- 178 (677)
..+...|...|++++|+..|++..+. .|+ +..++..+...|...|
T Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~--~P~--------------------------------~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRMYEKILQL--EAD--------------------------------NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTT--------------------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCC--------------------------------CHHHHHHHHHHHHHHhH
Confidence 78888888888888888888887764 233 2333344444444333
Q ss_pred -ChhHHHHHHhhcCCCCCee--eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh
Q 037537 179 -FLDEAKRVFYEMGEIKDEV--SWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMY 232 (677)
Q Consensus 179 -~~~~A~~~f~~m~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 232 (677)
..+.+...+... ..|+.. .|..+..++...|++++|+..|++..+ +.|+..
T Consensus 138 ~~~~~~~~~~~~~-~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 138 QEKKKLETDYKKL-SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHHHHHH-hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 234555666665 444332 233344455566778888888877766 445543
No 125
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.29 E-value=6.1e-06 Score=76.51 Aligned_cols=167 Identities=12% Similarity=0.059 Sum_probs=109.6
Q ss_pred hhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCH
Q 037537 306 SGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNL 385 (677)
Q Consensus 306 ~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 385 (677)
..+.+. |++++|+..|++.... .|+........ ..... .. .. ....+.+...|.+.|++
T Consensus 12 ~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~~~-~~~~~-~~---------------~~-~~~~~~lg~~~~~~g~~ 70 (208)
T 3urz_A 12 SAAIEA-GQNGQAVSYFRQTIAL--NIDRTEMYYWT-NVDKN-SE---------------IS-SKLATELALAYKKNRNY 70 (208)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHH--CHHHHHHHHHH-HSCTT-SH---------------HH-HHHHHHHHHHHHHTTCH
T ss_pred HHHHHC-CCHHHHHHHHHHHHHh--CCCChHHHHHh-hhcch-hh---------------hh-HHHHHHHHHHHHHCCCH
Confidence 344556 8888888888887764 34432111000 00000 00 00 23345588899999999
Q ss_pred HHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHH
Q 037537 386 EDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGK--VAEGQKYFSM 460 (677)
Q Consensus 386 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~ 460 (677)
++|...|++..+ .+...|..+...|...|++++|+..|++.++.. +.+..++..+...+...|. .+.+...++.
T Consensus 71 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 149 (208)
T 3urz_A 71 DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKK 149 (208)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999998764 366789999999999999999999999999853 3346778888777765554 3444555554
Q ss_pred hHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 461 MKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 461 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.. ...|....+..+..++...|++++|...|++.
T Consensus 150 ~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~a 183 (208)
T 3urz_A 150 LS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183 (208)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred Hh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 43 22333333444555667789999999999976
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.29 E-value=5.3e-06 Score=76.25 Aligned_cols=158 Identities=14% Similarity=0.041 Sum_probs=115.0
Q ss_pred HccCCHHHHHH---HHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCCH
Q 037537 380 SKCGNLEDARR---LFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLE----TNIPPT-NITFVSVLSACAHTGKV 451 (677)
Q Consensus 380 ~k~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~ 451 (677)
...|++++|.+ .+..-+......+..+...|...|++++|+..|++..+ .+..|. ..++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35789999999 66554444567889999999999999999999999876 222222 45677788889999999
Q ss_pred HHHHHHHHHhHHhcCCcc-C----hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCC--CCchhHH
Q 037537 452 AEGQKYFSMMKDMFGFEP-E----GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEP--SNAVPYV 524 (677)
Q Consensus 452 ~~a~~~~~~m~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p--~~~~~~~ 524 (677)
++|...++...+...-.+ + ...+..+...+...|++++|.+.+++... ..-+... ....++.
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----------~~~~~~~~~~~~~~~~ 151 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV-----------YAQQADDQVAIACAFR 151 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----------HHHhccchHHHHHHHH
Confidence 999999998876522222 2 34577888999999999999999987521 0000000 0123468
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 037537 525 MLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 525 ~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+..+|...|++++|.+.+++..+
T Consensus 152 ~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 152 GLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 899999999999999999988765
No 127
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.29 E-value=1.2e-05 Score=75.59 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=59.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-hH
Q 037537 412 QHGIGMEALRLFEWMLETNIPPTN-ITF-----------------VSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-GE 472 (677)
Q Consensus 412 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~-----------------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 472 (677)
..|+.++|+..|++.++. .|+. .+. ..+...+...|++++|...|+.+.+.+.-.|. ..
T Consensus 108 ~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 185 (225)
T 2yhc_A 108 DPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRD 185 (225)
T ss_dssp CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHH
Confidence 356677777777777763 3442 121 23445677899999999999999876222221 35
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.+..+..+|.+.|+.++|.+.++.+
T Consensus 186 a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 6788899999999999999999876
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.26 E-value=4.4e-06 Score=75.09 Aligned_cols=121 Identities=11% Similarity=0.159 Sum_probs=96.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHH-HhhcCCh-
Q 037537 411 AQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDL-LGRAGKL- 487 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~~- 487 (677)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+.+.+. .| +...+..+..+ |.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 45678888999999888753 445678888888899999999999999998865 34 56677778888 7788998
Q ss_pred -HHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 488 -TDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 488 -~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
++|.+.+++. ++++|.++..|..++.+|...|++++|...+++..+..
T Consensus 97 ~~~A~~~~~~a---------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKA---------------LALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHH---------------HHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999998876 56788888999999999999999999999999987753
No 129
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.25 E-value=0.00013 Score=71.43 Aligned_cols=210 Identities=11% Similarity=0.098 Sum_probs=155.0
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHhhhcccCC--CHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHH
Q 037537 283 MRDCMKVFEEIPQ---PDLVLWNTMISGYSQKEE--YSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHA 357 (677)
Q Consensus 283 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~ 357 (677)
.++|.++++.+.. .+...||.--..+... + +++++++++..+... .|...+.
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l-~~~~~~eeL~~~~~~L~~--nPk~y~a-------------------- 105 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNL-PNRNLYDELDWCEEIALD--NEKNYQI-------------------- 105 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC-TTSCHHHHHHHHHHHHHH--CTTCCHH--------------------
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHc-ccccHHHHHHHHHHHHHH--CcccHHH--------------------
Confidence 5677777776642 3445677766666666 6 899999999998874 4554432
Q ss_pred HHHHhhcccCccchhHHHHHHH----Hcc---CCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChH--HHHHHHHH
Q 037537 358 LTIKIEIRSNRISVNNALVAMY----SKC---GNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGM--EALRLFEW 425 (677)
Q Consensus 358 ~~~~~~~~~~~~~~~~~li~~y----~k~---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~ 425 (677)
++.-...+ .+. ++++++..+++.+.+ +|..+|+--.-.+.+.|.++ ++++.+++
T Consensus 106 --------------W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~ 171 (306)
T 3dra_A 106 --------------WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDK 171 (306)
T ss_dssp --------------HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 22111111 233 678899999988865 56778888888888889888 99999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCC------HHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHH-HHHHHHhC
Q 037537 426 MLETNIPPTNITFVSVLSACAHTGK------VAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTD-AERLIEAM 497 (677)
Q Consensus 426 m~~~g~~p~~~t~~~ll~a~~~~g~------~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~-A~~~~~~m 497 (677)
+++.. +-|...|+.-.....+.+. ++++.++++.+... .| |...|+-+-.++.+.|+..+ +.++.++.
T Consensus 172 ~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 172 VIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred HHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 99975 4456677766666666666 89999999998875 44 67778888888888887444 55566665
Q ss_pred CCCCChHHHHHHHHHhccC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 498 PFNPGSIALKAANHFLQLE---PSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 498 ~~~~~~~~~~~~~~l~~l~---p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
. +++ |.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 248 ~---------------~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 248 V---------------DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp E---------------EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H---------------hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 2 333 77889999999999999999999999999875
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.24 E-value=3.6e-05 Score=75.61 Aligned_cols=170 Identities=7% Similarity=-0.105 Sum_probs=122.0
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCC--C-Cc------chHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--H
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPE--H-NT------VSLNSMIAGYAQHGIGMEALRLFEWMLETNI---PPT--N 435 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~ 435 (677)
..+...+..|...|++++|.+.+....+ + +. ..+..+...+...|++++|+..|++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445677888999999999998875432 1 11 2234456667788999999999999986421 122 3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-----hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHH
Q 037537 436 ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-----GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAAN 510 (677)
Q Consensus 436 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 510 (677)
.+++.+...+...|++++|..+|+.+.+.....|+ ..++..+...|.+.|++++|.+.+++... ...
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~--------~~~ 227 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE--------ISC 227 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH--------HHH
Confidence 47888899999999999999999998843222232 25788899999999999999999987621 000
Q ss_pred HHhccCCCCchhHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 037537 511 HFLQLEPSNAVPYVMLANIYAASGKWEEV-ATIRRLMRD 548 (677)
Q Consensus 511 ~l~~l~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m~~ 548 (677)
. ....+.-..+|..++.+|...|++++| ...+++...
T Consensus 228 ~-~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 228 R-INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp H-TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred h-cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 0 001111256789999999999999999 776776543
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.20 E-value=2.7e-06 Score=83.14 Aligned_cols=191 Identities=11% Similarity=0.027 Sum_probs=127.3
Q ss_pred hhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 298 LVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 298 ~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
...+..+...+.+. |++++|+..|.+.... .|+. ...+..+..
T Consensus 4 a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~--~p~~----------------------------------~~~~~~la~ 46 (281)
T 2c2l_A 4 AQELKEQGNRLFVG-RKYPEAAACYGRAITR--NPLV----------------------------------AVYYTNRAL 46 (281)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CSCC----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCcc----------------------------------HHHHHHHHH
Confidence 34566666777777 8888898888888764 3432 556678888
Q ss_pred HHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHH
Q 037537 378 MYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN-ITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 453 (677)
.|.+.|++++|...+++..+ .+...|..+..+|...|++++|+..|++..+. .|+. ..+...+..... ..+
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~ 121 (281)
T 2c2l_A 47 CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAK 121 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHH
Confidence 88899999999999988765 35567888889999999999999999988773 2321 111111111111 111
Q ss_pred HHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 037537 454 GQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAAS 533 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~ 533 (677)
+... ...... ...++......+...+ .|+.++|.+.+++. ++++|++......+...+.+.
T Consensus 122 ~~~~-~~~~~~-~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~a---------------l~~~p~~~~~~~~l~~~~~~~ 182 (281)
T 2c2l_A 122 KKRW-NSIEER-RIHQESELHSYLTRLI--AAERERELEECQRN---------------HEGHEDDGHIRAQQACIEAKH 182 (281)
T ss_dssp HHHH-HHHHHT-CCCCCCHHHHHHHHHH--HHHHHHHHTTTSGG---------------GTTTSCHHHHTHHHHHHHHHH
T ss_pred HHHH-HHHHHH-HHhhhHHHHHHHHHHH--HHHHHHHHHHHHhh---------------hccccchhhhhhHHHHHHHHH
Confidence 1121 222222 3445555555554433 68888888877765 466777777777777777776
Q ss_pred -CChHHHHHHHHHHHhC
Q 037537 534 -GKWEEVATIRRLMRDR 549 (677)
Q Consensus 534 -g~~~~a~~~~~~m~~~ 549 (677)
+++++|.++|.+..+.
T Consensus 183 ~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 183 DKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 7799999999987653
No 132
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.19 E-value=2.1e-05 Score=67.61 Aligned_cols=96 Identities=10% Similarity=-0.020 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 436 ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 436 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
..+..+...+...|++++|...|+.+.+. .| +...|..+..+|.+.|++++|...+++. ++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l~ 80 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYG---------------AL 80 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------Hh
Confidence 34555566677788888888888877764 34 5667777788888888888888888765 56
Q ss_pred cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 515 LEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 515 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77888888888888888888888888888877653
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.18 E-value=1.1e-05 Score=70.22 Aligned_cols=119 Identities=10% Similarity=0.071 Sum_probs=88.0
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGK 450 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 450 (677)
+.+.+.+.+...+.++++.++ ...+...|..+...+.+.|++++|+..|++.++.. +.+...|..+..++...|+
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~ 85 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAI----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQ 85 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCS----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCHHHHhCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcc
Confidence 345555555544443333211 11245577788888899999999999999998853 3457788888888899999
Q ss_pred HHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 451 VAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 451 ~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+++|...|+...+. .| +...|..+..+|.+.|++++|.+.|++.
T Consensus 86 ~~~Ai~~~~~al~l---~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 86 FQQAADLYAVAFAL---GKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998865 45 4677888889999999999999998876
No 134
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.16 E-value=3.2e-05 Score=63.37 Aligned_cols=112 Identities=19% Similarity=0.142 Sum_probs=87.0
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID 479 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 479 (677)
...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+. .+.+...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 3456777888888999999999999988753 345677888888888899999999999988865 2234677888888
Q ss_pred HHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHH
Q 037537 480 LLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANI 529 (677)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~ 529 (677)
+|.+.|++++|.+.+++. ++++|.++..+..+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEG---------------LKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHH---------------HTTCTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH---------------HHcCCCCHHHHHHHHHh
Confidence 999999999999988876 45667776666665544
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.16 E-value=7.5e-06 Score=71.15 Aligned_cols=95 Identities=17% Similarity=0.078 Sum_probs=75.9
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHH
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCM 477 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 477 (677)
+...+..+...+.+.|++++|+..|++.+... +.+...+..+..++...|++++|...|+...+. .| +...+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---DIXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCchHHHHH
Confidence 44567777888888899999999998888753 445777888888888889999999999888864 44 46777888
Q ss_pred HHHHhhcCChHHHHHHHHhC
Q 037537 478 IDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m 497 (677)
..+|...|++++|.+.|++.
T Consensus 96 g~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 88888999999999888765
No 136
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.16 E-value=0.00011 Score=68.14 Aligned_cols=160 Identities=11% Similarity=-0.018 Sum_probs=105.3
Q ss_pred chhhHHHHHHHHHHcCCCHHHHHHHHhhCCC-CChhhHHHHHhhhcccCC---CHHHHHHHHHHHhhcCCCCCcchHHHH
Q 037537 265 NSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ-PDLVLWNTMISGYSQKEE---YSDQALGCFKKLNRVGYHPDDCSFVCV 340 (677)
Q Consensus 265 ~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~~~---~~~~A~~l~~~m~~~g~~p~~~t~~~l 340 (677)
+......|-.+|...++ .++|.+.|++..+ .+..++..|-..|... | ++++|+.+|++..+.|.
T Consensus 17 ~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~-g~~~~~~~A~~~~~~A~~~g~---------- 84 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGD-YQKAEYWAQKAAAQGDGDALALLAQLKIRN-PQQADYPQARQLAEKAVEAGS---------- 84 (212)
T ss_dssp CHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHTTCHHHHHHHHHHTTSS-TTSCCHHHHHHHHHHHHHTTC----------
T ss_pred CHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHCCC----------
Confidence 44445555555555555 6666666665442 3344555555555542 2 77888888888765431
Q ss_pred HHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHc----cCCHHHHHHHHhcCCCCC-----cchHHHHHHHHH
Q 037537 341 ISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSK----CGNLEDARRLFDRMPEHN-----TVSLNSMIAGYA 411 (677)
Q Consensus 341 l~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~ 411 (677)
+..+..|..+|.. .+++++|...|++..+.+ +.++..|...|.
T Consensus 85 ----------------------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~ 136 (212)
T 3rjv_A 85 ----------------------------KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA 136 (212)
T ss_dssp ----------------------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 4445566666666 778888888888877633 577888888888
Q ss_pred H----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-C-----CHHHHHHHHHHhHHhcCC
Q 037537 412 Q----HGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHT-G-----KVAEGQKYFSMMKDMFGF 467 (677)
Q Consensus 412 ~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~~~~~m~~~~~~ 467 (677)
. .++.++|+..|++..+. .++...+..+-..+... | +.++|...|+...+. |.
T Consensus 137 ~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~-g~ 199 (212)
T 3rjv_A 137 SGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE-GF 199 (212)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH-TC
T ss_pred cCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc-CC
Confidence 8 77889999999998885 23444566666666432 2 788888888888776 54
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.15 E-value=1.5e-05 Score=70.35 Aligned_cols=125 Identities=12% Similarity=0.062 Sum_probs=102.6
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
...+..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+..++..+...+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 45667888889999999999999997653 467789999999999999999999999999854 44577888888999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCcc-ChHHH--HHHHHHHhhcCChHHHHHHHHhC
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEP-EGEHY--SCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~--~~li~~~~~~g~~~~A~~~~~~m 497 (677)
...|++++|...|+.+.+. .| +...+ ..+...+.+.|++++|.+.+++.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 9999999999999999875 33 33344 44455577889999999998764
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.11 E-value=3.7e-05 Score=75.52 Aligned_cols=167 Identities=11% Similarity=0.000 Sum_probs=119.9
Q ss_pred hHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHH
Q 037537 300 LWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMY 379 (677)
Q Consensus 300 ~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y 379 (677)
.+...+..+... |++++|++.+.+..+.. |........ ...+..+...|
T Consensus 77 ~l~~~~~~~~~~-~~y~~A~~~~~~~l~~~--~~~~~~~~~----------------------------~~~~~~~~~~~ 125 (293)
T 2qfc_A 77 QFKDQVIMLCKQ-KRYKEIYNKVWNELKKE--EYHPEFQQF----------------------------LQWQYYVAAYV 125 (293)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHTC--CCCHHHHHH----------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hhHHHHHHHHHHHhccc--cCChhHHHH----------------------------HHHHHHHHHHH
Confidence 344456667777 89999999998877642 221111000 22334566778
Q ss_pred HccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHH
Q 037537 380 SKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQHGIGMEALRLFEWMLET-NIPPT-----NITFVSVLSA 444 (677)
Q Consensus 380 ~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~t~~~ll~a 444 (677)
...|++++|...|++..+ .+ ..+|+.+...|...|++++|+..|++..+. ...|+ ..++..+...
T Consensus 126 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~ 205 (293)
T 2qfc_A 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp HTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH
Confidence 889999999998876532 12 347889999999999999999999998731 01222 2578888899
Q ss_pred HhccCCHHHHHHHHHHhHHhc---CCcc-ChHHHHHHHHHHhhcCChHHH-HHHHHhC
Q 037537 445 CAHTGKVAEGQKYFSMMKDMF---GFEP-EGEHYSCMIDLLGRAGKLTDA-ERLIEAM 497 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m 497 (677)
|...|++++|..+++...+.. +... -...|..+...|.+.|+.++| ...+++.
T Consensus 206 y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 206 LYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 999999999999999887541 1111 156788899999999999999 7777764
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.11 E-value=1.5e-05 Score=76.12 Aligned_cols=125 Identities=13% Similarity=0.022 Sum_probs=97.4
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHh
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPE--HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT--NITFVSVLSACA 446 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~ 446 (677)
+.-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+..+-.++.
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 445677888899999999999999875 433366666778899999999999998654421 111 236778888999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCccC--hHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 447 HTGKVAEGQKYFSMMKDMFGFEPE--GEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..|++++|+..|++.... ...|. .........++.+.|+.++|...|+++
T Consensus 183 ~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999998753 32253 446667778899999999999999987
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.10 E-value=2.3e-05 Score=65.73 Aligned_cols=96 Identities=13% Similarity=0.087 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 436 ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 436 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
..+......+...|++++|...|+...+. .| +...|..+..+|.+.|++++|.+.+++. ++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a---------------l~ 66 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKA---------------IE 66 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHH---------------HH
Confidence 34555556666777777777777777654 33 4566777777777888888887777765 46
Q ss_pred cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 515 LEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 515 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 67 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 67 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 67777778888888888888888888888776653
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.08 E-value=9.1e-05 Score=72.66 Aligned_cols=163 Identities=11% Similarity=0.002 Sum_probs=118.4
Q ss_pred HHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccC
Q 037537 304 MISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCG 383 (677)
Q Consensus 304 li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g 383 (677)
.+..+... |++++|..++++..+. .+........ ...+..+...|...|
T Consensus 81 ~i~~~~~~-~~y~~a~~~~~~~l~~--~~~~~~~~~~----------------------------~~~~~~l~~~~~~~~ 129 (293)
T 3u3w_A 81 QVIMLCKQ-KRYKEIYNKVWNELKK--EEYHPEFQQF----------------------------LQWQYYVAAYVLKKV 129 (293)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHTT--CCCCHHHHHH----------------------------HHHHHHHHHHHTTSS
T ss_pred HHHHHHHH-hhHHHHHHHHHHHhcc--ccCChHHHHH----------------------------HHHHHHHHHHHHccc
Confidence 35667777 9999999999998763 2221111000 223455677778888
Q ss_pred CHHHHHHHHhcCCC-----CCc----chHHHHHHHHHHcCChHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHhcc
Q 037537 384 NLEDARRLFDRMPE-----HNT----VSLNSMIAGYAQHGIGMEALRLFEWMLE----T-NIPPT-NITFVSVLSACAHT 448 (677)
Q Consensus 384 ~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~-g~~p~-~~t~~~ll~a~~~~ 448 (677)
++++|...|++..+ ++. .+|+.+...|...|++++|+..|+++.+ . +..|. ..++..+...|...
T Consensus 130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 3u3w_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 99999998886542 232 2689999999999999999999999884 1 22222 24788888999999
Q ss_pred CCHHHHHHHHHHhHHhc---CCccC-hHHHHHHHHHHhhcCC-hHHHHHHHHhC
Q 037537 449 GKVAEGQKYFSMMKDMF---GFEPE-GEHYSCMIDLLGRAGK-LTDAERLIEAM 497 (677)
Q Consensus 449 g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~li~~~~~~g~-~~~A~~~~~~m 497 (677)
|++++|..+++...+.. +..+. ...|..+..+|.+.|+ +++|.+.+++.
T Consensus 210 ~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 99999999999887531 22222 5688889999999995 69999988765
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.06 E-value=3.3e-05 Score=62.68 Aligned_cols=99 Identities=11% Similarity=-0.002 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 435 NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 435 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
...+..+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|.+.+++. ++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a---------------~~ 68 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYV---------------IN 68 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HH
Confidence 344555566666777777777777776654 1224556677777777788888887777765 35
Q ss_pred cCCC--CchhHHHHHHHHHhc-CChHHHHHHHHHHHhCC
Q 037537 515 LEPS--NAVPYVMLANIYAAS-GKWEEVATIRRLMRDRG 550 (677)
Q Consensus 515 l~p~--~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~g 550 (677)
+.|. +...|..++.+|... |++++|.+.+++..+..
T Consensus 69 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 69 VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred hCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 5666 777788888888888 88888888887776543
No 143
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=6.2e-05 Score=64.77 Aligned_cols=113 Identities=17% Similarity=0.077 Sum_probs=90.4
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHH
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEH 473 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~ 473 (677)
+...|..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|...++...+. .| +...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHH
Confidence 4567888888899999999999999999874 566 567778888888999999999999988865 34 5677
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 037537 474 YSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYA 531 (677)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~ 531 (677)
+..+..+|.+.|++++|.+.+++. ++++|++...+..+..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~a---------------l~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRC---------------VSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH---------------HHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH---------------HHcCCCcHHHHHHHHHHHh
Confidence 888888999999999999998876 4667777776666655543
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.06 E-value=4.1e-05 Score=63.45 Aligned_cols=112 Identities=18% Similarity=0.272 Sum_probs=91.7
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
...+..+...|.+.|++++|.+.|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 45677888899999999999999988753 356788999999999999999999999999864 45677888999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhc
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRA 484 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~ 484 (677)
...|++++|...++.+.+. .| +...+..+..++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL---DPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhc
Confidence 9999999999999999875 34 455566665555543
No 145
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.05 E-value=1.3e-05 Score=84.75 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=95.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcC
Q 037537 407 IAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAG 485 (677)
Q Consensus 407 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 485 (677)
...+.+.|++++|++.|++.++.. +.+..++..+..++...|++++|...+++..+. .| +...|..+..+|.+.|
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 344567889999999999998853 334778888889999999999999999998864 45 4778888999999999
Q ss_pred ChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHH--HHhcCChHHHHHHHHH
Q 037537 486 KLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANI--YAASGKWEEVATIRRL 545 (677)
Q Consensus 486 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~~ 545 (677)
++++|.+.+++. ++++|++...+..+..+ +.+.|++++|.+.+++
T Consensus 89 ~~~eA~~~~~~a---------------l~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 89 KFRAALRDYETV---------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp CHHHHHHHHHHH---------------HHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999876 57788888888888888 8888999999998874
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.05 E-value=4.7e-05 Score=64.68 Aligned_cols=100 Identities=9% Similarity=-0.045 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHH
Q 037537 433 PTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHF 512 (677)
Q Consensus 433 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 512 (677)
.+...+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|...+++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--------------- 69 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRA--------------- 69 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------
Confidence 34667777777788888888888888887764 1224677788888888888888888888765
Q ss_pred hccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 513 LQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 513 ~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++++|.++..|..++.+|...|++++|...+++..+.
T Consensus 70 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 70 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4677888888888999999999999998888887654
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.04 E-value=2.8e-05 Score=66.85 Aligned_cols=94 Identities=15% Similarity=0.037 Sum_probs=74.8
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMI 478 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 478 (677)
...+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...|+...+. .| +...+..+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg 93 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM---DINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHHHHHHH
Confidence 3456667778888899999999999888753 445677788888888899999999999988865 34 466777888
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 037537 479 DLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m 497 (677)
.+|...|++++|.+.|++.
T Consensus 94 ~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 8889999999999988866
No 148
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.04 E-value=0.00049 Score=67.26 Aligned_cols=211 Identities=8% Similarity=0.004 Sum_probs=130.7
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC--ChHHHHHHHhhccc---cChhHHHHHHHHH----Hhc---CC
Q 037537 13 RDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCG--CLSAAHHAFNQTQH---ANVFSFNVLLAAY----ARQ---LR 80 (677)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~li~~~----~~~---g~ 80 (677)
...++|+.+.+.++..+ |-+..+++.--..+...| +++++.+.++.+.. .+..+|+.--..+ .+. ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 34467888888888887 666677787777777777 88888888888887 3444566544444 444 67
Q ss_pred hhHHHHHhccCCC---CCcchHHHHHHHHHhCCChh--HHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHH
Q 037537 81 IASARQLFDQIPQ---PDLVSYNTLISAYADCGDTE--SALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLA 155 (677)
Q Consensus 81 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~ 155 (677)
+++++.+++.+.+ .|-.+|+.-.-.+.+.|.++ ++++.++++.+.. |
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~-------------------------- 177 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--L-------------------------- 177 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--T--------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--C--------------------------
Confidence 8888888888764 45667777666777778777 8888888888653 2
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCC------hhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCchH-HHHHHHHHHHCC
Q 037537 156 IYCGFDHYASVNNSLLTCYSRNGF------LDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGLE-ALQLFQEMVSLQ 226 (677)
Q Consensus 156 ~~~g~~~~~~~~~~li~~~~~~g~------~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g 226 (677)
.|-..|+.--..+.+.|. ++++.+.++++ ....|...|+-+-..+.+.|+..+ +.++..+..+.+
T Consensus 178 ------~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 178 ------KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp ------TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred ------CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 222333333333333333 56666666554 133456667777777777666444 334444443322
Q ss_pred --CCCCHhHHHHHHHHHccCCChHHHHHHHHHHH
Q 037537 227 --LGLDMYTLASILTAFTSLEDLVGGLQFHAHLI 258 (677)
Q Consensus 227 --~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 258 (677)
-..+...+..+...+.+.|+.++|.++++.+.
T Consensus 252 ~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 252 KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 11244455555555555555555555555544
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.02 E-value=6.1e-05 Score=63.04 Aligned_cols=92 Identities=12% Similarity=0.026 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDL 480 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 480 (677)
.|..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...++...+. .| +...|..+..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 46667777888888888888888888753 345677888888888888888888888888764 44 46677788888
Q ss_pred HhhcCChHHHHHHHHhC
Q 037537 481 LGRAGKLTDAERLIEAM 497 (677)
Q Consensus 481 ~~~~g~~~~A~~~~~~m 497 (677)
|...|++++|.+.+++.
T Consensus 82 ~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 82 QIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHH
Confidence 88888888888888765
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.00 E-value=4.5e-05 Score=72.89 Aligned_cols=133 Identities=10% Similarity=0.048 Sum_probs=99.4
Q ss_pred HHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccC
Q 037537 304 MISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCG 383 (677)
Q Consensus 304 li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g 383 (677)
....+... |++++|.++|..+...+ |+. + ....+...+.+.+
T Consensus 108 yA~~L~~~-g~y~eA~~~l~~~~~~~--p~~----------------------------------~-~~~~~a~l~~~~~ 149 (282)
T 4f3v_A 108 FAACEAAQ-GNYADAMEALEAAPVAG--SEH----------------------------------L-VAWMKAVVYGAAE 149 (282)
T ss_dssp HHHHHHHH-TCHHHHHHHHTSSCCTT--CHH----------------------------------H-HHHHHHHHHHHTT
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHhcC--Cch----------------------------------H-HHHHHHHHHHHcC
Confidence 45566677 89999999998876532 432 2 3345556888999
Q ss_pred CHHHHHHHHhcCCCC-C----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHH
Q 037537 384 NLEDARRLFDRMPEH-N----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT--NITFVSVLSACAHTGKVAEGQK 456 (677)
Q Consensus 384 ~~~~A~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~ 456 (677)
++++|+..|+...+. + ...+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..
T Consensus 150 r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~ 229 (282)
T 4f3v_A 150 RWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA 229 (282)
T ss_dssp CHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999876542 2 23677788999999999999999999986443264 3356667778889999999999
Q ss_pred HHHHhHHhcCCccChHHHHHH
Q 037537 457 YFSMMKDMFGFEPEGEHYSCM 477 (677)
Q Consensus 457 ~~~~m~~~~~~~p~~~~~~~l 477 (677)
.|+.+... .|+...+..|
T Consensus 230 ~l~~a~a~---~P~~~~~~aL 247 (282)
T 4f3v_A 230 LLEWLQTT---HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHH---SCCHHHHHHH
T ss_pred HHHHHHhc---CCcHHHHHHH
Confidence 99999875 5664444444
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.00 E-value=6e-05 Score=66.58 Aligned_cols=110 Identities=13% Similarity=0.073 Sum_probs=90.4
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHH
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCM 477 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 477 (677)
+...|..+...+.+.|++++|++.|++.++.. +.+...+..+..++...|++++|...|+...+. .| +...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 34567788888999999999999999998853 335778888888999999999999999999875 45 47788889
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHH
Q 037537 478 IDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLA 527 (677)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~ 527 (677)
..+|.+.|++++|.+.|++. ++++|++...|....
T Consensus 86 g~~~~~~g~~~~A~~~~~~a---------------l~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKG---------------IEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHH---------------HHHHSSSCCHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH---------------HHhCCCchHHHHHHH
Confidence 99999999999999999876 577788877655443
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.00 E-value=2e-05 Score=70.73 Aligned_cols=114 Identities=9% Similarity=0.012 Sum_probs=88.3
Q ss_pred HccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCH--HH
Q 037537 380 SKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSA-CAHTGKV--AE 453 (677)
Q Consensus 380 ~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~--~~ 453 (677)
...|++++|...|+...+ .+...|..+...|...|++++|+..|++..+.. +.+...+..+... +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 346777778777776542 456788999999999999999999999998853 3356677777777 7788998 99
Q ss_pred HHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 454 GQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
|...++.+.+. .| +...+..+...|.+.|++++|.+.+++.
T Consensus 100 A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 100 TRAMIDKALAL---DSNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999875 44 4677888889999999999999999876
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.99 E-value=4e-05 Score=67.74 Aligned_cols=98 Identities=9% Similarity=0.030 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHH
Q 037537 434 TNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHF 512 (677)
Q Consensus 434 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 512 (677)
+...+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|.+.+++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--------------- 71 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELA--------------- 71 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHH---------------
Confidence 3557788888899999999999999999875 45 6788999999999999999999999876
Q ss_pred hccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 513 LQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 513 ~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++++|.++..|..+..+|...|++++|.+.+++..+.
T Consensus 72 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 72 TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999998764
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.96 E-value=3.4e-05 Score=64.21 Aligned_cols=92 Identities=14% Similarity=0.003 Sum_probs=63.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCC
Q 037537 439 VSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEP 517 (677)
Q Consensus 439 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p 517 (677)
..+...+...|++++|...|+...+. .| +...|..+..++.+.|++++|...+++. ++++|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a---------------l~l~P 82 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHA---------------RMLDP 82 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCC
Confidence 34445556667777777777776654 34 4566666777777777777777777654 46677
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 518 SNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 518 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+++..|..|..+|...|++++|...+++..+
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 83 KDIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777777777777777654
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.95 E-value=8e-05 Score=60.92 Aligned_cols=98 Identities=12% Similarity=0.043 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 435 NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 435 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
...+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|.+.+++. ++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---------------~~ 66 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT---------------VD 66 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHH---------------HH
Confidence 456777788889999999999999999875 2236778888999999999999999999876 46
Q ss_pred cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 515 LEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 515 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+.|.++..|..++.+|...|++++|.+.+++..+.
T Consensus 67 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 67 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 77888999999999999999999999999988764
No 156
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.95 E-value=5.2e-05 Score=80.02 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=94.0
Q ss_pred hHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 037537 372 NNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHT 448 (677)
Q Consensus 372 ~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 448 (677)
+..+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.|++.++.. +.+..++..+..++...
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34445567789999999999998754 457789999999999999999999999999953 33477888999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHH--HhhcCChHHHHHHHH
Q 037537 449 GKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDL--LGRAGKLTDAERLIE 495 (677)
Q Consensus 449 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~--~~~~g~~~~A~~~~~ 495 (677)
|++++|.+.|++..+. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999875 34 34455555555 888999999999998
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.94 E-value=9.9e-05 Score=59.72 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=60.9
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc---ChHHHH
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP---EGEHYS 475 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p---~~~~~~ 475 (677)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+. .| +...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV---IEDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---SCCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccchHHHHH
Confidence 34455566666666677777777777666643 334556666666666777777777777766653 23 355666
Q ss_pred HHHHHHhhc-CChHHHHHHHHhC
Q 037537 476 CMIDLLGRA-GKLTDAERLIEAM 497 (677)
Q Consensus 476 ~li~~~~~~-g~~~~A~~~~~~m 497 (677)
.+..+|.+. |++++|.+.+++.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 667777777 7777777777665
No 158
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.92 E-value=7.5e-05 Score=62.77 Aligned_cols=114 Identities=10% Similarity=-0.009 Sum_probs=94.3
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. +.+...+..+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 56778888999999999999999998654 356788999999999999999999999999853 44577888889999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCC
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGK 486 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 486 (677)
...|++++|.+.|+...+. .| +...+..+..++.+.|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL---DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999865 44 35666677777766553
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.90 E-value=8.9e-05 Score=61.92 Aligned_cols=115 Identities=17% Similarity=0.119 Sum_probs=96.5
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSAC 445 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 445 (677)
...+..+...+...|++++|...|++..+ .+...|..+...+...|++++|++.+++..+.. +.+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 56677888999999999999999998653 466788999999999999999999999999853 44577888888999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCCh
Q 037537 446 AHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKL 487 (677)
Q Consensus 446 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 487 (677)
...|++++|...|+...+. .| +...+..+..++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL---DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999875 34 566777788888777764
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.89 E-value=8.7e-05 Score=62.98 Aligned_cols=96 Identities=6% Similarity=-0.064 Sum_probs=75.5
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHH
Q 037537 398 HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSC 476 (677)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 476 (677)
.+...|..+...+...|++++|+..|++.++.. +.+...+..+...+...|++++|...++...+. .| +...+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~ 82 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL---DGQSVKAHFF 82 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CchhHHHHHH
Confidence 355677778888888888888888888888753 344677788888888888888888888888765 34 4677888
Q ss_pred HHHHHhhcCChHHHHHHHHhC
Q 037537 477 MIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m 497 (677)
+..+|.+.|++++|.+.+++.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 888888888888888888765
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.89 E-value=6.5e-05 Score=78.85 Aligned_cols=129 Identities=10% Similarity=0.054 Sum_probs=103.1
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT----------------NITFVSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
...|..+...|.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|...++.+.+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 446777888888899999999999988874 333 47788888899999999999999999987
Q ss_pred hcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHH-
Q 037537 464 MFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVAT- 541 (677)
Q Consensus 464 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~- 541 (677)
. .| +...|..+..+|.+.|++++|...|++. ++++|++..+|..+..++...|+++++.+
T Consensus 346 ~---~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a---------------l~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 346 L---DSANEKGLYRRGEAQLLMNEFESAKGDFEKV---------------LEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp H---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred c---CCccHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 44 5778888999999999999999999876 57889999999999999999999998764
Q ss_pred HHHHHHh
Q 037537 542 IRRLMRD 548 (677)
Q Consensus 542 ~~~~m~~ 548 (677)
+++.|-.
T Consensus 408 ~~~~~f~ 414 (457)
T 1kt0_A 408 IYANMFK 414 (457)
T ss_dssp HHHHC--
T ss_pred HHHHHHh
Confidence 4555543
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.89 E-value=8.2e-05 Score=62.22 Aligned_cols=96 Identities=9% Similarity=0.031 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-ccC----hHHHH
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGF-EPE----GEHYS 475 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~----~~~~~ 475 (677)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+++.+.+...- .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 457778888899999999999999998854 446778888888899999999999999998865111 111 67788
Q ss_pred HHHHHHhhcCChHHHHHHHHhC
Q 037537 476 CMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m 497 (677)
.+..+|.+.|++++|.+.+++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 8999999999999999999876
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=0.00013 Score=62.74 Aligned_cols=98 Identities=4% Similarity=-0.061 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC----hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHH
Q 037537 434 TNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE----GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAA 509 (677)
Q Consensus 434 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 509 (677)
+...+..+...+...|++++|...|+...+ ..|+ ...+..+...|.+.|++++|.+.+++.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------ 91 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA------------ 91 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHH------------
Confidence 466788888899999999999999999985 4676 678888999999999999999999876
Q ss_pred HHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 510 NHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 510 ~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
++++|+++..|..+..+|...|++++|...+++..+.
T Consensus 92 ---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 92 ---IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp ---HHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4667888899999999999999999999999998764
No 164
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.85 E-value=0.00011 Score=67.21 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=84.3
Q ss_pred CCCHHHHHH---HHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHH
Q 037537 280 SGDMRDCMK---VFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIH 356 (677)
Q Consensus 280 g~~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~ 356 (677)
|+ +++|.+ .+..-+......++.+...+... |++++|+..|++....-...+.
T Consensus 6 g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~---------------------- 61 (203)
T 3gw4_A 6 HD-YALAERQAQALLAHPATASGARFMLGYVYAFM-DRFDEARASFQALQQQAQKSGD---------------------- 61 (203)
T ss_dssp -C-HHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCC----------------------
T ss_pred cc-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHcCC----------------------
Confidence 55 677776 55443334455666677777777 7888888877776542111000
Q ss_pred HHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC-----C-C----cchHHHHHHHHHHcCChHHHHHHHHHH
Q 037537 357 ALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE-----H-N----TVSLNSMIAGYAQHGIGMEALRLFEWM 426 (677)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m 426 (677)
.+....++..+...|...|++++|...|++..+ + + ...+..+...+...|++++|...+++.
T Consensus 62 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 62 --------HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred --------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 000044556667777777777777776665432 1 1 223555666666677777777766665
Q ss_pred HHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 427 LETNI-PPT----NITFVSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 427 ~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
.+..- .++ ..++..+...+...|++++|...++...+
T Consensus 134 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 134 LVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 53210 111 12344555556666666666666665543
No 165
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.85 E-value=7.6e-05 Score=74.82 Aligned_cols=125 Identities=11% Similarity=0.044 Sum_probs=106.9
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC--CC----------------cchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE--HN----------------TVSLNSMIAGYAQHGIGMEALRLFEWMLETN 430 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 430 (677)
...+..+...|.+.|++++|...|++..+ |+ ...|..+..+|.+.|++++|+..|++.++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 56778889999999999999999987653 33 3789999999999999999999999999854
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHH-HHHHHhC
Q 037537 431 IPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDA-ERLIEAM 497 (677)
Q Consensus 431 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m 497 (677)
+.+...+..+..++...|++++|...|+.+.+. .| +...+..+..++.+.|+.++| .+++++|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788999999999999999999999999875 45 467888899999999999999 4566665
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.83 E-value=0.0024 Score=63.11 Aligned_cols=216 Identities=10% Similarity=0.064 Sum_probs=141.6
Q ss_pred HHHHHHHHhhCC---CCChhhHHHHHhhhcccCC-CHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHH
Q 037537 283 MRDCMKVFEEIP---QPDLVLWNTMISGYSQKEE-YSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHAL 358 (677)
Q Consensus 283 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~ 358 (677)
.++|.++++++. ..+...||.--..+... + .++++++++..+... .|..
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l-~~~l~eEL~~~~~~L~~--nPKn------------------------ 122 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSL-NKSLEDELRLMNEFAVQ--NLKS------------------------ 122 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHT--TCCC------------------------
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHh--CCCc------------------------
Confidence 556666666654 23445677665555555 5 588888888888864 4443
Q ss_pred HHHhhcccCccchhHHHHHHHHcc-C-CHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChH--------HHHHHHHH
Q 037537 359 TIKIEIRSNRISVNNALVAMYSKC-G-NLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGM--------EALRLFEW 425 (677)
Q Consensus 359 ~~~~~~~~~~~~~~~~li~~y~k~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~ 425 (677)
..+++.-...+.+. + +++++.++++.+.+ +|..+|+--.-.+.+.|..+ ++++.+++
T Consensus 123 ----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k 192 (349)
T 3q7a_A 123 ----------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNE 192 (349)
T ss_dssp ----------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHH
Confidence 23333333333333 4 67888888888876 35566776655555556666 99999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCC-------HHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCCh----------
Q 037537 426 MLETNIPPTNITFVSVLSACAHTGK-------VAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKL---------- 487 (677)
Q Consensus 426 m~~~g~~p~~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~---------- 487 (677)
+++.. +-|...|+.-...+.+.+. ++++.++++.+... .| |...|+-+-.++.+.|+-
T Consensus 193 ~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~ 268 (349)
T 3q7a_A 193 MLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILP 268 (349)
T ss_dssp HHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGG
T ss_pred HHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccc
Confidence 99965 4467778877777777775 78888888888864 45 566677666667666653
Q ss_pred ----------HHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 488 ----------TDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 488 ----------~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+..++..++...... .+.+++.+.++..|+++|...|+.++|.++++.+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 269 YTASKLNPDIETVEAFGFPMPSDPLP---------EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GTC--------------CCCCC-CCC---------SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHHHhcccc---------cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 3344444444221100 022356778899999999999999999999999864
No 167
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.79 E-value=7.9e-05 Score=64.99 Aligned_cols=138 Identities=12% Similarity=0.018 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC----hH
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLETNI-PPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE----GE 472 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 472 (677)
++..+...|...|++++|+..+++..+..- .++ ..++..+...+...|++++|..+++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455566666666777777777666654210 011 135666667777788888888888776653211111 44
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
.+..+...+...|++++|.+.+++.... .+. ....+.....+..+..+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAI--------AQE-LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH--------HHH-ccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6777788888999999999888765200 000 000112245788899999999999999999988764
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.79 E-value=0.00039 Score=58.06 Aligned_cols=90 Identities=16% Similarity=0.059 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC----hHHH
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-N---ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE----GEHY 474 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~ 474 (677)
+..+...+...|++++|+..|++..+.. |+ . ..+..+..++...|++++|...|+.+.+. .|+ ...+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~ 79 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGL 79 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHH
Confidence 3445566677777788888777777642 33 2 36666667777778888888888777764 233 4556
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC
Q 037537 475 SCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..+..+|.+.|++++|.+.+++.
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 66777777888888888877765
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.77 E-value=9e-05 Score=62.22 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=50.6
Q ss_pred hhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 037537 371 VNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETN--IPPT----NITFVSV 441 (677)
Q Consensus 371 ~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~~l 441 (677)
.+..|...|.+.|++++|...|++..+ .+...|+.+..+|...|++++|++.|++.++.. ..++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 445555666666666666666665432 244556666666666666666666666655421 0111 1234444
Q ss_pred HHHHhccCCHHHHHHHHHHhHH
Q 037537 442 LSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~ 463 (677)
..++...|++++|.+.|+...+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555556666666666665554
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.77 E-value=0.00017 Score=59.88 Aligned_cols=93 Identities=12% Similarity=-0.031 Sum_probs=71.3
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHH
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMID 479 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 479 (677)
..+..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...|+...+. .| +...+..+..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~la~ 93 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAV 93 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 346666777888888888888888888743 335667777777888888888888888888764 45 4667778888
Q ss_pred HHhhcCChHHHHHHHHhC
Q 037537 480 LLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m 497 (677)
+|.+.|++++|.+.+++.
T Consensus 94 ~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 888888888888888765
No 171
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.74 E-value=0.00028 Score=62.04 Aligned_cols=64 Identities=22% Similarity=0.167 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 471 GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
...|..+..+|.+.|++++|...+++. ++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~a---------------l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEV---------------LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHH---------------HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 467888899999999999999999876 6889999999999999999999999999999988764
No 172
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.72 E-value=9.1e-05 Score=74.30 Aligned_cols=127 Identities=7% Similarity=0.010 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNI------------------TFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------------------t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
|..+...+.+.|++++|+..|++.++. .|+.. .|..+..++.+.|++++|...++...+.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444455555556666666666665542 33322 6777788888999999999999988865
Q ss_pred cCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHH-HhcCChHHHHHH
Q 037537 465 FGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIY-AASGKWEEVATI 542 (677)
Q Consensus 465 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y-~~~g~~~~a~~~ 542 (677)
.| +...|..+..+|...|++++|.+.|++. ++++|.++..+..|..+. ...+..+++..+
T Consensus 260 ---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a---------------l~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 260 ---EEKNPKALFRRGKAKAELGQMDSARDDFRKA---------------QKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp ---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT---------------TC-----------------------------
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 5678888888999999999999999887 366778888888887774 445667777778
Q ss_pred HHHHHhC
Q 037537 543 RRLMRDR 549 (677)
Q Consensus 543 ~~~m~~~ 549 (677)
+++|...
T Consensus 322 ~~~~l~~ 328 (338)
T 2if4_A 322 YKGIFKG 328 (338)
T ss_dssp -------
T ss_pred HHHhhCC
Confidence 8777543
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.72 E-value=0.00024 Score=59.37 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=78.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-h---HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc
Q 037537 439 VSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-G---EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ 514 (677)
Q Consensus 439 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 514 (677)
..+...+...|++++|...|+.+.+. .|+ . ..+..+...|.+.|++++|.+.+++. ++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~---------------~~ 67 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL---------------VS 67 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH---------------HH
Confidence 34456677899999999999999875 343 2 47778889999999999999999876 46
Q ss_pred cCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 515 LEPSN---AVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 515 l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
..|++ +.++..++.+|...|++++|...+++..+.
T Consensus 68 ~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 68 RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777 677999999999999999999999998764
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.71 E-value=3.2e-05 Score=63.89 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=43.9
Q ss_pred cCCHHHHHHHHHHhHHhcCC-cc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHH
Q 037537 448 TGKVAEGQKYFSMMKDMFGF-EP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVM 525 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~ 525 (677)
.|++++|...|+...+. +. .| +...+..+..+|.+.|++++|.+.+++. ++++|+++.++..
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a---------------l~~~p~~~~~~~~ 66 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG---------------VKQFPNHQALRVF 66 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCchHHHHH
Confidence 34455555555555432 10 12 2344555555566666666666665544 3455555666666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 037537 526 LANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 526 l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
++.+|...|++++|...+++..+
T Consensus 67 l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666655543
No 175
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.70 E-value=0.00029 Score=68.55 Aligned_cols=94 Identities=6% Similarity=-0.068 Sum_probs=69.3
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMI 478 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 478 (677)
...+..+...+...|++++|+..|++.++.. +.+...+..+...+...|++++|...++...+ +.| +...+..+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg 79 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 3456677777888888888888888887742 33566777777777888888888888887764 344 456677777
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 037537 479 DLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m 497 (677)
.+|.+.|++++|.+.|++.
T Consensus 80 ~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 8888888888888887765
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.68 E-value=0.00016 Score=73.37 Aligned_cols=122 Identities=7% Similarity=0.020 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLET--------------NIPP-TNITFVSVLSACAHTGKVAEGQKYFSMMKDMFG 466 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--------------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 466 (677)
.|..+...+.+.|++++|++.|++.++. ...| +..+|..+..++.+.|++++|...++...+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 3566667777777777777777777651 0123 3467788888889999999999999998853
Q ss_pred Ccc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHH
Q 037537 467 FEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVAT 541 (677)
Q Consensus 467 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 541 (677)
.| +...|..+..+|.+.|++++|.+.+++. ++++|++...+..+..++...|+.+++.+
T Consensus 303 -~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A---------------l~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 -DPSNTKALYRRAQGWQGLKEYDQALADLKKA---------------QEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 4678888899999999999999998876 57888888899999999888888777754
No 177
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.67 E-value=0.00032 Score=58.76 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC--------hH
Q 037537 401 VSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE--------GE 472 (677)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--------~~ 472 (677)
..|..+...+.+.|++++|++.|++.++.. +-+..+|..+..++...|++++|...++...+. .|+ ..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHHHH
Confidence 457788899999999999999999999853 334778889999999999999999999998864 332 24
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.|..+...|...|++++|.+.|++.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777888899999999999999875
No 178
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.66 E-value=0.0071 Score=59.75 Aligned_cols=222 Identities=15% Similarity=0.084 Sum_probs=133.1
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCC-ChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcc
Q 037537 69 NVLLAAYARQLRIASARQLFDQIPQ--P-DLVSYNTLISAYADCG-DTESALSLFKDMREKRFDTDGFTLSGLITASSNN 144 (677)
Q Consensus 69 ~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 144 (677)
+.+.....+....++|+++++.+.. | +..+||.--..+...| .+++++++++.+.... |.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PK-------------- 121 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LK-------------- 121 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CC--------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CC--------------
Confidence 3333344444555677777777654 3 3445666656666666 4788888888777542 22
Q ss_pred hhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-C-ChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCch-------
Q 037537 145 LCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRN-G-FLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQHREGL------- 213 (677)
Q Consensus 145 ~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~-g-~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~g~~~------- 213 (677)
+..+|+.--..+.+. + +++++.++++++ ...+|-.+|+.-.-.+.+.|.++
T Consensus 122 ------------------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 122 ------------------SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp ------------------CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred ------------------cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhH
Confidence 233344444444444 4 667777777777 22334555665554544445555
Q ss_pred -HHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCC-------hHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCC---
Q 037537 214 -EALQLFQEMVSLQLGLDMYTLASILTAFTSLED-------LVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGD--- 282 (677)
Q Consensus 214 -~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~--- 282 (677)
++++.++++.+..+ -|...|+.....+.+.+. ++++.+....++... +.|...|+-+-..+.+.|..
T Consensus 184 ~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~ 261 (349)
T 3q7a_A 184 GSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVP 261 (349)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccc
Confidence 78888888877543 256666666666666654 566777777777664 56677777766666666552
Q ss_pred ----------------HHHHHHHHhhCCC---------CChhhHHHHHhhhcccCCCHHHHHHHHHHHhh
Q 037537 283 ----------------MRDCMKVFEEIPQ---------PDLVLWNTMISGYSQKEEYSDQALGCFKKLNR 327 (677)
Q Consensus 283 ----------------~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~ 327 (677)
.........++.. +....+..+...|... |+.++|.++++.+.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~-~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQ-NRVDDAAKVFEKLSS 330 (349)
T ss_dssp GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Confidence 2333333333331 4556677788888887 888999999998864
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.66 E-value=0.00031 Score=60.52 Aligned_cols=69 Identities=10% Similarity=-0.014 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhH----HHHHHHHHhcCChHHHHHHHHHHH
Q 037537 472 EHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPY----VMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
..|..+..++.+.|++++|+..+++.. ...++.++++|++...| .....++...|++++|+..|++..
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL--------~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKAL--------HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH--------HhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 378888999999999999999998762 22344455699999999 999999999999999999999986
Q ss_pred h
Q 037537 548 D 548 (677)
Q Consensus 548 ~ 548 (677)
+
T Consensus 130 e 130 (159)
T 2hr2_A 130 E 130 (159)
T ss_dssp H
T ss_pred h
Confidence 5
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.64 E-value=0.00013 Score=61.05 Aligned_cols=110 Identities=12% Similarity=0.072 Sum_probs=88.0
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCC----HHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNI--PPT----NITFV 439 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~t~~ 439 (677)
...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+... .++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 44567788899999999999999987653 4567888999999999999999999999987531 222 66788
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHH
Q 037537 440 SVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLL 481 (677)
Q Consensus 440 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 481 (677)
.+...+...|++++|...|+.+.+. .|+......+..++
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 8888999999999999999999875 46666555554443
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.001 Score=68.99 Aligned_cols=208 Identities=8% Similarity=-0.035 Sum_probs=138.6
Q ss_pred cccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHH
Q 037537 309 SQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLED 387 (677)
Q Consensus 309 ~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~ 387 (677)
.+. |++++|++.|.++.+.......... ..+ ........ ...+..|...|.+.|++++
T Consensus 15 ~~~-~~y~eA~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~------------~~al~~l~~~y~~~~~~~~ 73 (434)
T 4b4t_Q 15 VNE-KQYNEAEQVYLSLLDKDSSQSSAAA--------GASVDDKRRNEQ------------ETSILELGQLYVTMGAKDK 73 (434)
T ss_dssp HHH-TCHHHHHHHHHHHHHSCCCSSSBSS--------SSSBCSHHHHHH------------HHHHHHHHHHHHHHTCHHH
T ss_pred HHC-CCHHHHHHHHHHHHhhCcccchhHH--------HHHHHHHHhhhH------------HHHHHHHHHHHHHCCCHHH
Confidence 345 8999999999998875432221110 000 00000000 2245778899999999999
Q ss_pred HHHHHhcCCC-----CCc----chHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCCHHH
Q 037537 388 ARRLFDRMPE-----HNT----VSLNSMIAGYAQHGIGMEALRLFEWMLE----TNIPPT-NITFVSVLSACAHTGKVAE 453 (677)
Q Consensus 388 A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~ 453 (677)
|.+.+....+ ++. ...+.+-..+...|+.++|++++++... .+..+. ..++..+...+...|++++
T Consensus 74 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (434)
T 4b4t_Q 74 LREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKD 153 (434)
T ss_dssp HHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHH
Confidence 9999987753 111 1233333444567889999999988764 333444 4577788889999999999
Q ss_pred HHHHHHHhHHhcCCcc----ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhcc-CCC--CchhHHHH
Q 037537 454 GQKYFSMMKDMFGFEP----EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQL-EPS--NAVPYVML 526 (677)
Q Consensus 454 a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l-~p~--~~~~~~~l 526 (677)
|..+++.+.....-.. ....+..++.+|...|++++|..++++.... .... +|+ -...+..+
T Consensus 154 A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------~~~~~~~~~~~~~~~~~~ 222 (434)
T 4b4t_Q 154 SLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA-----------ANSIYCPTQTVAELDLMS 222 (434)
T ss_dssp HHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-----------hhcCCCchHHHHHHHHHH
Confidence 9999998876432222 2567888999999999999999999875210 0011 111 12457778
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 037537 527 ANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 527 ~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
+..|...|++++|...+.+..+
T Consensus 223 g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 223 GILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 8888999999999988877643
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.58 E-value=0.00026 Score=61.58 Aligned_cols=129 Identities=12% Similarity=-0.004 Sum_probs=99.5
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE-----HN----TVSLNSMIAGYAQHGIGMEALRLFEWMLETNI-PPT---- 434 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~---- 434 (677)
..++..+...|...|++++|...|++..+ .+ ..++..+...|...|++++|++.+++..+..- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678888899999999999999987653 12 14788889999999999999999999875310 112
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 435 NITFVSVLSACAHTGKVAEGQKYFSMMKDMF---GFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 435 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
..++..+...+...|++++|...++...+.. +..+ ....+..+...|...|++++|.+.+++.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3467777788889999999999999887542 1111 2456778889999999999999999865
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.57 E-value=0.00023 Score=62.59 Aligned_cols=93 Identities=14% Similarity=0.023 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC-------CC---------CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 402 SLNSMIAGYAQHGIGMEALRLFEWMLET-------NI---------PP-TNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~---------~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
.|......+.+.|++++|+..|.+.++. .- .| +...|..+..++...|++++|...++...+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3455556666666666766666666553 10 12 2356777777888888999998888888864
Q ss_pred cCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 465 FGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 465 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.| +...|..+..+|...|++++|.+.|++.
T Consensus 93 ---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 93 ---EETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp ---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---CCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 44 4677888888888899999998888765
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.55 E-value=8.7e-05 Score=61.21 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=51.5
Q ss_pred cCChHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHH
Q 037537 413 HGIGMEALRLFEWMLETNI-PPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTD 489 (677)
Q Consensus 413 ~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 489 (677)
.|++++|+..|++.++.+. .|+ ...+..+...+...|++++|...|+...+. .| +...+..+..+|.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHHH
Confidence 4667777777777776431 122 455666666777777777777777777654 33 35566667777777777777
Q ss_pred HHHHHHhC
Q 037537 490 AERLIEAM 497 (677)
Q Consensus 490 A~~~~~~m 497 (677)
|.+.+++.
T Consensus 80 A~~~~~~a 87 (117)
T 3k9i_A 80 GVELLLKI 87 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 185
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.52 E-value=0.00042 Score=63.26 Aligned_cols=125 Identities=9% Similarity=0.015 Sum_probs=96.9
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC---CCc----------------chHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE---HNT----------------VSLNSMIAGYAQHGIGMEALRLFEWMLET 429 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~----------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 429 (677)
...+..+...|.+.|++++|...|++..+ .+. ..|..+..+|...|++++|+..+++.++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44566778889999999999999987643 233 67888999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHH-HHHHhC
Q 037537 430 NIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAE-RLIEAM 497 (677)
Q Consensus 430 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~-~~~~~m 497 (677)
. +.+...+..+..++...|++++|...|+...+. .| +...+..+..++.+.|+.+++. ..+..|
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 445778889999999999999999999999865 45 4667788888888888777776 445554
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00034 Score=72.72 Aligned_cols=190 Identities=10% Similarity=-0.025 Sum_probs=129.9
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHccCChHHHHHHHhhccc-----cCh
Q 037537 7 KTCVGRRDLVTGKSLHALYLKNLVPFSA----------------YLSNHFILLYSKCGCLSAAHHAFNQTQH-----ANV 65 (677)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~ 65 (677)
+.....|++++|.+.+..+++..-.... ..+..+...|...|++++|.+.+..+.. ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3456789999999999999986522111 2377889999999999999999988776 121
Q ss_pred ----hHHHHHHHHHHhcCChhHHHHHhccCCC-----CC----cchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcc
Q 037537 66 ----FSFNVLLAAYARQLRIASARQLFDQIPQ-----PD----LVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGF 132 (677)
Q Consensus 66 ----~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 132 (677)
.+.+.+-..+...|+++.|..++..... .+ ..++..+...|...|++++|..++++....-..++..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2233344445567889999888876532 11 2357788999999999999999999876532222211
Q ss_pred cHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc------CCCC-C--eeeHHHHH
Q 037537 133 TLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM------GEIK-D--EVSWNSMV 203 (677)
Q Consensus 133 t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m------~~~~-~--~~~~~~li 203 (677)
.. ...++..++..|...|++++|...+++. ...| . ...+..+.
T Consensus 172 ~~----------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 223 (434)
T 4b4t_Q 172 PS----------------------------LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSG 223 (434)
T ss_dssp TH----------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred hh----------------------------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Confidence 11 1234577788899999999999888776 1111 1 23355566
Q ss_pred HHHHhCCCchHHHHHHHHHHH
Q 037537 204 VAYGQHREGLEALQLFQEMVS 224 (677)
Q Consensus 204 ~~~~~~g~~~~A~~~~~~m~~ 224 (677)
..+...|++++|...|.+..+
T Consensus 224 ~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 224 ILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 666777888888777766643
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.43 E-value=0.00078 Score=70.60 Aligned_cols=133 Identities=14% Similarity=0.017 Sum_probs=99.2
Q ss_pred HHHHcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-CccC-hHHHH
Q 037537 409 GYAQHGIGMEALRLFEWMLET---NIPPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMF----G-FEPE-GEHYS 475 (677)
Q Consensus 409 ~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~~~~ 475 (677)
.+..+|++++|+.++++.++. -+-|+ ..+++.+..+|...|++++|..++++..+.+ | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999887752 12233 3578889999999999999999998876532 2 1233 45788
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037537 476 CMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNA---VPYVMLANIYAASGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 551 (677)
.|..+|...|++++|+.++++.. .+.++. +.|+++ .....|..++...|++++|..++++++++-.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al--------~i~~~~--lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY--------AILLVT--HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH--------HHHHHH--TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH--------HHHHHH--hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998762 122222 344444 4456788889999999999999999987543
No 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.36 E-value=0.00089 Score=70.15 Aligned_cols=126 Identities=10% Similarity=0.079 Sum_probs=104.1
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC--C-C---------------cchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE--H-N---------------TVSLNSMIAGYAQHGIGMEALRLFEWMLETN 430 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 430 (677)
...+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..|++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 55677888999999999999999998754 3 2 4789999999999999999999999999854
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHH-HHHhCC
Q 037537 431 IPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAER-LIEAMP 498 (677)
Q Consensus 431 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~-~~~~m~ 498 (677)
+.+...|..+..++...|++++|...|+.+.+ +.| +...+..+..++.+.|+.++|.+ ++++|-
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578899999999999999999999999985 456 46788889999999999988874 566663
No 189
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.34 E-value=0.013 Score=57.66 Aligned_cols=162 Identities=13% Similarity=0.033 Sum_probs=109.5
Q ss_pred cchhHHHHHHHHccC--CHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037537 369 ISVNNALVAMYSKCG--NLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGI-GMEALRLFEWMLETNIPPTNITFVSVL 442 (677)
Q Consensus 369 ~~~~~~li~~y~k~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll 442 (677)
..+|+.-.-.+.+.| .++++..+++.+.+ +|..+|+--.-.+...|. ++++++.++++++.. +-|...|+...
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~ 186 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRS 186 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 555665555566666 48899999988865 567788888777888888 589999999999865 44566666655
Q ss_pred HHHhcc--------------CCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhc-----------CChHHHHHHHHh
Q 037537 443 SACAHT--------------GKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRA-----------GKLTDAERLIEA 496 (677)
Q Consensus 443 ~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~ 496 (677)
..+.+. +.++++.+++...... .| |...|+-+--.+.+. +.++++++.++
T Consensus 187 ~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~- 262 (331)
T 3dss_A 187 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK- 262 (331)
T ss_dssp HHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH-
Confidence 554443 5688899999988865 45 456666555555544 23445555554
Q ss_pred CCCCCChHHHHHHHHHhccCCCCchhHHHHHHH---HHhcCChHHHHHHHHHHHhC
Q 037537 497 MPFNPGSIALKAANHFLQLEPSNAVPYVMLANI---YAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 497 m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~---y~~~g~~~~a~~~~~~m~~~ 549 (677)
++++++|++.-.+..++.. ....|..+++...+.++++.
T Consensus 263 --------------elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 263 --------------ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp --------------HHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred --------------HHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4578999885444433322 22457778888888888763
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00024 Score=57.53 Aligned_cols=95 Identities=9% Similarity=0.130 Sum_probs=72.5
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC-------hH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE-------GE 472 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------~~ 472 (677)
...|..+...+...|++++|++.|++.++.. +.+...+..+..++...|++++|...++...+ +.|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHHH
Confidence 4467778888889999999999999988853 44577888888888999999999999998885 4565 44
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCC
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (677)
.+..+..++...|+.++|.+.+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 55666666777777777766666554
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.25 E-value=0.0019 Score=69.32 Aligned_cols=135 Identities=9% Similarity=0.020 Sum_probs=105.7
Q ss_pred HHHHHHHHhcCCC---CCcchHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHH
Q 037537 385 LEDARRLFDRMPE---HNTVSLNSMIAGYAQHG--IGMEALRLFEWMLETNIPPTNITFVSVLSACAHTG-KVAEGQKYF 458 (677)
Q Consensus 385 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~~~~a~~~~ 458 (677)
++++.+.++.+.+ ++..+|+--.-.+.+.| +++++++.++++.+.. +-|..+|+.--..+.+.| .++++.+++
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~ 167 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHH
Confidence 7888888888764 46678888888888889 6699999999999965 446778888777778888 899999999
Q ss_pred HHhHHhcCCcc-ChHHHHHHHHHHhhc--------------CChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhH
Q 037537 459 SMMKDMFGFEP-EGEHYSCMIDLLGRA--------------GKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPY 523 (677)
Q Consensus 459 ~~m~~~~~~~p-~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~ 523 (677)
+.+.+. .| +...|+....++.+. +.+++|.+.+++ +++++|+|..+|
T Consensus 168 ~~~I~~---~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~---------------ai~~~P~~~saW 229 (567)
T 1dce_A 168 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN---------------AFFTDPNDQSAW 229 (567)
T ss_dssp HTTTTT---TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH---------------HHHHCSSCSHHH
T ss_pred HHHHHH---CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHH---------------HHhhCCCCccHH
Confidence 998864 45 566676666665553 345666666554 478899999999
Q ss_pred HHHHHHHHhcCChHH
Q 037537 524 VMLANIYAASGKWEE 538 (677)
Q Consensus 524 ~~l~~~y~~~g~~~~ 538 (677)
.-+...+.+.|+.++
T Consensus 230 ~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 230 FYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHSCCCCCSC
T ss_pred HHHHHHHhcCCCccc
Confidence 999999999998665
No 192
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.23 E-value=0.028 Score=55.16 Aligned_cols=214 Identities=12% Similarity=0.016 Sum_probs=127.4
Q ss_pred HhcCCChH-HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC----------hHHHHHHHhhccc---cChhHHHHHHHH
Q 037537 9 CVGRRDLV-TGKSLHALYLKNLVPFSAYLSNHFILLYSKCGC----------LSAAHHAFNQTQH---ANVFSFNVLLAA 74 (677)
Q Consensus 9 ~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~---~~~~~~~~li~~ 74 (677)
....|.+. +|+.+.+.++..+ |-+..+++.--..+...+. ++++..+++.+.. .+..+|+.-.-.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34445544 6788888888776 4455555554333333332 5667777777666 455677766666
Q ss_pred HHhcC--ChhHHHHHhccCCC---CCcchHHHHHHHHHhCCC-hhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhH
Q 037537 75 YARQL--RIASARQLFDQIPQ---PDLVSYNTLISAYADCGD-TESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLI 148 (677)
Q Consensus 75 ~~~~g--~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 148 (677)
+.+.| .++++..+++.+.+ .|-.+|+.-.-.+.+.|. ++++++.+.++.+.. |.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~------------------ 177 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FS------------------ 177 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SC------------------
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CC------------------
Confidence 66666 37788888887764 466677766666667777 478888888887653 22
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhc--------------CChhHHHHHHhhc--CCCCCeeeHHHHHHHHHhC---
Q 037537 149 KQLHCLAIYCGFDHYASVNNSLLTCYSRN--------------GFLDEAKRVFYEM--GEIKDEVSWNSMVVAYGQH--- 209 (677)
Q Consensus 149 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~--------------g~~~~A~~~f~~m--~~~~~~~~~~~li~~~~~~--- 209 (677)
|...|+..-..+.+. +.++++.+.+++. ..+.|..+|+-+-..+.+.
T Consensus 178 --------------N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 178 --------------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp --------------CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCG
T ss_pred --------------CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCc
Confidence 222233222222222 3456777777765 2334666787665555554
Q ss_pred --------CCchHHHHHHHHHHHCCCCCCHhHHHH-----HHHHHccCCChHHHHHHHHHHHHh
Q 037537 210 --------REGLEALQLFQEMVSLQLGLDMYTLAS-----ILTAFTSLEDLVGGLQFHAHLIKS 260 (677)
Q Consensus 210 --------g~~~~A~~~~~~m~~~g~~pd~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~~ 260 (677)
+.++++++.++++.+ +.||. .|.. ++.+....+..++....+..+++.
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 346788888888887 34553 2321 222223445556666666666654
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.23 E-value=0.00098 Score=52.92 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=59.0
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 470 EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+...+..+...|.+.|++++|.+.|++. ++++|+++.+|..+..+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEEL---------------VETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5677888999999999999999999876 5888999999999999999999999999999987653
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0008 Score=54.27 Aligned_cols=95 Identities=13% Similarity=-0.006 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHH
Q 037537 433 PTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHF 512 (677)
Q Consensus 433 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 512 (677)
++...+..+...+...|++++|...|+...+. -+.+...+..+..+|.+.|++++|.+.+++.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a--------------- 64 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQG--------------- 64 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------
Confidence 34567778888899999999999999999875 2235778889999999999999999999876
Q ss_pred hccCCCC------chhHHHHHHHHHhcCChHHHHHHHH
Q 037537 513 LQLEPSN------AVPYVMLANIYAASGKWEEVATIRR 544 (677)
Q Consensus 513 ~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~ 544 (677)
++++|++ ...+..+..++...|++++|.+.++
T Consensus 65 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 65 LRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 4677777 6677777888877777776654443
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.21 E-value=0.0014 Score=66.44 Aligned_cols=121 Identities=10% Similarity=0.038 Sum_probs=99.3
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC-------------------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE-------------------HNTVSLNSMIAGYAQHGIGMEALRLFEWMLET 429 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 429 (677)
...+..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.+++.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 44567788889999999999999887653 23567889999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHH
Q 037537 430 NIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERL 493 (677)
Q Consensus 430 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 493 (677)
. +.+...+..+..++...|++++|...|+.+.+. .| +...+..+..++.+.++.+++.+.
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 335778889999999999999999999999875 45 566777788888888887777653
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.14 E-value=0.0019 Score=52.58 Aligned_cols=78 Identities=10% Similarity=0.040 Sum_probs=57.4
Q ss_pred HHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 037537 453 EGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYA 531 (677)
Q Consensus 453 ~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~ 531 (677)
++...|+...+. .| +...+..+...|.+.|++++|.+.+++. ++++|.++.+|..+..+|.
T Consensus 3 ~a~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l~~~p~~~~~~~~la~~~~ 64 (115)
T 2kat_A 3 AITERLEAMLAQ---GTDNMLLRFTLGKTYAEHEQFDAALPHLRAA---------------LDFDPTYSVAWKWLGKTLQ 64 (115)
T ss_dssp CHHHHHHHHHTT---TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHHCCCcHHHHHHHHHHHH
Confidence 345556666542 34 4667777778888888888888887765 4667777788888888888
Q ss_pred hcCChHHHHHHHHHHHh
Q 037537 532 ASGKWEEVATIRRLMRD 548 (677)
Q Consensus 532 ~~g~~~~a~~~~~~m~~ 548 (677)
..|++++|...+++..+
T Consensus 65 ~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 65 GQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888887765
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.13 E-value=0.0023 Score=49.20 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhcc
Q 037537 436 ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQL 515 (677)
Q Consensus 436 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l 515 (677)
..+..+...+...|++++|...|+...+. .+.+...+..+..+|.+.|++++|.+.+++. +++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA---------------LEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------Hhc
Confidence 44555555666666777777776666653 1224556666677777777777777777654 355
Q ss_pred CCCCchhHHHHHHHHHhcC
Q 037537 516 EPSNAVPYVMLANIYAASG 534 (677)
Q Consensus 516 ~p~~~~~~~~l~~~y~~~g 534 (677)
+|.++..+..+..++...|
T Consensus 73 ~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CTTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 6666667776666665443
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.10 E-value=0.0015 Score=56.14 Aligned_cols=94 Identities=17% Similarity=0.067 Sum_probs=61.7
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCCC--CC--------c-----chHHHHHHHHHHcCChHHHHHHHHHHHHC-----
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMPE--HN--------T-----VSLNSMIAGYAQHGIGMEALRLFEWMLET----- 429 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~--------~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 429 (677)
..+......+.+.|++++|...|++..+ |+ . ..|+.+..++...|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 3445566667778888888888876653 22 1 16777777777888888888777777762
Q ss_pred CCCCC-HHHH----HHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 430 NIPPT-NITF----VSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 430 g~~p~-~~t~----~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
.+.|| ...| .....++...|++++|...|+...+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11454 3455 5666666666777777766666654
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.01 E-value=0.0031 Score=53.49 Aligned_cols=113 Identities=11% Similarity=-0.020 Sum_probs=92.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhh----cCChH
Q 037537 413 HGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGR----AGKLT 488 (677)
Q Consensus 413 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~ 488 (677)
.++.++|++.|++..+.| .|+.. +-..+...+.+++|.+.|+...+. -+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346789999999999988 45444 666677778899999999999875 356777788888887 89999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 037537 489 DAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAA----SGKWEEVATIRRLMRDRGV 551 (677)
Q Consensus 489 ~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~g~ 551 (677)
+|.++|++.... .++.++..|..+|.. .+++++|.+.+++..+.|.
T Consensus 79 ~A~~~~~~Aa~~-----------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGL-----------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcC-----------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999976321 356789999999999 8999999999999988875
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.00 E-value=0.0013 Score=69.00 Aligned_cols=123 Identities=7% Similarity=-0.018 Sum_probs=81.5
Q ss_pred ccCCCHHHHHHHHHHHhhc---CCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHH
Q 037537 310 QKEEYSDQALGCFKKLNRV---GYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLE 386 (677)
Q Consensus 310 ~~~~~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 386 (677)
.. |++++|+.++++.++. -+.|+.... ..+++.|...|...|+++
T Consensus 321 ~q-g~~~eA~~l~~~aL~~~~~~lg~~Hp~~-------------------------------a~~~~nLa~~y~~~g~~~ 368 (490)
T 3n71_A 321 SE-GLYHEVVKLCRECLEKQEPVFADTNLYV-------------------------------LRLLSIASEVLSYLQAYE 368 (490)
T ss_dssp TT-TCHHHHHHHHHHHHHHHTTTBCTTSHHH-------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred hC-CCHHHHHHHHHHHHHHHHHhcCCCCHHH-------------------------------HHHHHHHHHHHHHhcCHH
Confidence 44 8999999998887642 234444333 667788999999999999
Q ss_pred HHHHHHhcCCC----------CC-cchHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC---H-HHHHHHHHHHhcc
Q 037537 387 DARRLFDRMPE----------HN-TVSLNSMIAGYAQHGIGMEALRLFEWMLET---NIPPT---N-ITFVSVLSACAHT 448 (677)
Q Consensus 387 ~A~~~~~~~~~----------~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~---~-~t~~~ll~a~~~~ 448 (677)
+|..++++..+ |+ ..+++.|...|..+|++++|+.++++.++- -+-|| . .+...+-.+....
T Consensus 369 eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 448 (490)
T 3n71_A 369 EASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL 448 (490)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 99988876532 22 246777888888888888888888776541 11233 2 2333444455566
Q ss_pred CCHHHHHHHHHHhHHh
Q 037537 449 GKVAEGQKYFSMMKDM 464 (677)
Q Consensus 449 g~~~~a~~~~~~m~~~ 464 (677)
+.+++|+.++..+++.
T Consensus 449 ~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 449 RMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777777766654
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.93 E-value=0.0031 Score=49.08 Aligned_cols=68 Identities=24% Similarity=0.221 Sum_probs=57.3
Q ss_pred ccChHHHHHHHHHHhhcCC---hHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 037537 468 EPEGEHYSCMIDLLGRAGK---LTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRR 544 (677)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 544 (677)
.++...+..+..++...++ .++|..++++. ++++|+++.+...+...+.+.|++++|+..|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~A---------------L~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~ 67 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQA---------------LQLEPYNEAALSLIANDHFISFRFQEAIDTWV 67 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---------------HHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3467777778777765544 68888888765 78999999999999999999999999999999
Q ss_pred HHHhCC
Q 037537 545 LMRDRG 550 (677)
Q Consensus 545 ~m~~~g 550 (677)
++.+..
T Consensus 68 ~~l~~~ 73 (93)
T 3bee_A 68 LLLDSN 73 (93)
T ss_dssp HHHTCC
T ss_pred HHHhhC
Confidence 998865
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.83 E-value=0.004 Score=49.28 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=44.5
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
+...|..+...|...|++++|+..|++.++.. +.+...|..+..++...|++++|...|+...+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44566677777777777777777777777643 233556777777777777777777777766643
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.79 E-value=0.0023 Score=52.12 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=47.6
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 399 NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
+...|..+...|...|++++|+..|++.++.. +.+...+..+..++...|++++|...|+...+.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667777777888888888888888877743 334567777777777888888888888777654
No 204
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.79 E-value=0.005 Score=61.49 Aligned_cols=126 Identities=11% Similarity=0.054 Sum_probs=67.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh------------------HHHHHHHHHccCCChHHHHHHHHHHHHh
Q 037537 199 WNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMY------------------TLASILTAFTSLEDLVGGLQFHAHLIKS 260 (677)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~------------------t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 260 (677)
|..+...+.+.|++++|+..|++.... .|+.. .|..+..++.+.|+++.|...+..+++.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555566666666666666665542 23322 6677777888888888888888888876
Q ss_pred CCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC--C-ChhhHHHHHhhhcccCCCHHHHHHHHHHHhhc
Q 037537 261 GFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ--P-DLVLWNTMISGYSQKEEYSDQALGCFKKLNRV 328 (677)
Q Consensus 261 g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~~~~~~A~~l~~~m~~~ 328 (677)
. +.+...+..+..+|...|+ +++|...|++..+ | +...+..+.....+..+..+++..+|..|...
T Consensus 260 ~-p~~~~a~~~lg~a~~~~g~-~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 260 E-EKNPKALFRRGKAKAELGQ-MDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp C-TTCHHHHHHHHHHHHTTTC-HHHHHHHHHHTTC------------------------------------
T ss_pred C-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4 4566788888888888888 9999999988764 3 33445444444233325667777888877653
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.77 E-value=0.023 Score=60.98 Aligned_cols=149 Identities=9% Similarity=-0.046 Sum_probs=118.1
Q ss_pred ccCCHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 037537 381 KCGNLEDARRLFDRMPE---HNTVSLNSMIAGYAQHGI----------GMEALRLFEWMLETNIPPTNITFVSVLSACAH 447 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 447 (677)
+...-++|.+.++.+.+ .+...|+.--..+...|+ ++++++.++++.+.. +-+..+|..-...+.+
T Consensus 41 ~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 33445778888888764 345678877777777777 899999999999864 4457788888888888
Q ss_pred cC--CHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcC-ChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhH
Q 037537 448 TG--KVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAG-KLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPY 523 (677)
Q Consensus 448 ~g--~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~ 523 (677)
.| +++++...++.+.+. .| +...|+.-..++.+.| .++++.+.++++ ++.+|.|..+|
T Consensus 120 l~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~---------------I~~~p~n~saW 181 (567)
T 1dce_A 120 LPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSL---------------ITRNFSNYSSW 181 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT---------------TTTTCCCHHHH
T ss_pred cccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHH---------------HHHCCCCccHH
Confidence 89 779999999999976 44 5667877777888888 899999999988 47788999999
Q ss_pred HHHHHHHHhc--------------CChHHHHHHHHHHHh
Q 037537 524 VMLANIYAAS--------------GKWEEVATIRRLMRD 548 (677)
Q Consensus 524 ~~l~~~y~~~--------------g~~~~a~~~~~~m~~ 548 (677)
.-...++... ++++++++.+++...
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 9988888774 557888888877665
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.77 E-value=0.0013 Score=56.52 Aligned_cols=93 Identities=11% Similarity=0.149 Sum_probs=62.1
Q ss_pred ccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHHHHHhhcCChH---HHHHHHHhCCCCCChHHHHHHHHHhccCCCCchh
Q 037537 447 HTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMIDLLGRAGKLT---DAERLIEAMPFNPGSIALKAANHFLQLEPSNAVP 522 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~ 522 (677)
+.+.+++|.+.++...+. .| +...|..+..++.+.|+++ +|++.+++. ....+++++++|++..+
T Consensus 14 r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eA--------i~~le~AL~ldP~~~~A 82 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEA--------ITKFEEALLIDPKKDEA 82 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH--------HHHHHHHHHHCTTCHHH
T ss_pred HHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHH--------HHHHHHHHHhCcCcHHH
Confidence 345566677777666654 34 4566666666666655543 222222222 22334458999999999
Q ss_pred HHHHHHHHHhcC-----------ChHHHHHHHHHHHhCC
Q 037537 523 YVMLANIYAASG-----------KWEEVATIRRLMRDRG 550 (677)
Q Consensus 523 ~~~l~~~y~~~g-----------~~~~a~~~~~~m~~~g 550 (677)
|..+.++|...| ++++|++.|++..+..
T Consensus 83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 999999999875 8999999999988753
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.77 E-value=0.0022 Score=55.03 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=67.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhHHhcCCccC-hHHHHHHHH
Q 037537 411 AQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGK----------VAEGQKYFSMMKDMFGFEPE-GEHYSCMID 479 (677)
Q Consensus 411 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 479 (677)
.+.+++++|++.+++..+.. +.+...|..+-.++...+. +++|+..|++..+. .|+ ...|..+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHHH
Confidence 44566788888888888753 3456677767666666654 56899999988864 664 678888999
Q ss_pred HHhhcC-----------ChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchh
Q 037537 480 LLGRAG-----------KLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVP 522 (677)
Q Consensus 480 ~~~~~g-----------~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~ 522 (677)
+|...| ++++|.+.|++. ++++|++...
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kA---------------l~l~P~~~~y 127 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQA---------------VDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHH---------------HHHCTTCHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHH---------------HHhCCCCHHH
Confidence 988765 788888887765 6888877543
No 208
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.65 E-value=0.023 Score=64.19 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=104.9
Q ss_pred HHHhcCChhHHHH-HhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHH
Q 037537 74 AYARQLRIASARQ-LFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLH 152 (677)
Q Consensus 74 ~~~~~g~~~~A~~-~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~ 152 (677)
.....+++++|.+ ++..++. ......++..+.+.|.+++|+++.+.-.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~----------------------------- 656 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQD----------------------------- 656 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHH-----------------------------
T ss_pred HHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcc-----------------------------
Confidence 3445788888888 6655441 1223777777888888888887653211
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh
Q 037537 153 CLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMY 232 (677)
Q Consensus 153 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 232 (677)
.-...+..+|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+..
T Consensus 657 ----------------~~f~~~l~~~~~~~A~~~~~~~---~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------- 709 (814)
T 3mkq_A 657 ----------------QKFELALKVGQLTLARDLLTDE---SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------- 709 (814)
T ss_dssp ----------------HHHHHHHHHTCHHHHHHHHTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------
T ss_pred ----------------hheehhhhcCCHHHHHHHHHhh---CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------
Confidence 1123456789999999998887 4567899999999999999999999998754
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhC
Q 037537 233 TLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEI 293 (677)
Q Consensus 233 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~ 293 (677)
|..+...+...++.+...++-......| -++.-...|.++|+ +++|.+++.++
T Consensus 710 -~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~-~~~a~~~~~~~ 762 (814)
T 3mkq_A 710 -LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGD-IQGAKDLLIKS 762 (814)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTC-HHHHHHHHHHT
T ss_pred -hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCC-HHHHHHHHHHc
Confidence 3444555555777776666665555554 22444455666777 88888777765
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.60 E-value=0.0065 Score=62.60 Aligned_cols=127 Identities=14% Similarity=0.110 Sum_probs=90.0
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhc--CCccC----hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHh-c
Q 037537 442 LSACAHTGKVAEGQKYFSMMKDMF--GFEPE----GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFL-Q 514 (677)
Q Consensus 442 l~a~~~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~-~ 514 (677)
+..+...|++++|..+++...+.. -+.|+ ..+++.|..+|...|++++|+.++++.. ...++++ .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L--------~i~~~~lg~ 365 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM--------EPYRIFFPG 365 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------HHHHHHSCS
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--------HhHHHHcCC
Confidence 444556778888888888776432 12222 4578889999999999999999998762 1222222 2
Q ss_pred cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037537 515 LEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLEEMSRKMK 594 (677)
Q Consensus 515 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~ 594 (677)
-.|.-..+++.|..+|...|++++|..++++..+--.+ .-...||...+++..|.+....|+
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 23444567889999999999999999999987652110 112459999999888888877775
No 210
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.55 E-value=0.024 Score=43.19 Aligned_cols=81 Identities=16% Similarity=0.254 Sum_probs=55.0
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCcc-ChHHHHHHH
Q 037537 400 TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEP-EGEHYSCMI 478 (677)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 478 (677)
...|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...++...+. .| +...+..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCHHHHHHHH
Confidence 3456667777777888888888888877643 334566777777778888888888888877764 34 355555555
Q ss_pred HHHhhc
Q 037537 479 DLLGRA 484 (677)
Q Consensus 479 ~~~~~~ 484 (677)
.++.+.
T Consensus 85 ~~~~~~ 90 (91)
T 1na3_A 85 NAKQKQ 90 (91)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555443
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.41 E-value=0.0063 Score=62.59 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=81.0
Q ss_pred ccCCHHHHHHHHHHhHHhc--CCccC----hHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhc-cCCCC
Q 037537 447 HTGKVAEGQKYFSMMKDMF--GFEPE----GEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQ-LEPSN 519 (677)
Q Consensus 447 ~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~-l~p~~ 519 (677)
+.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++.. .+.++++. -+|+-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL--------~i~~~~lG~~Hp~~ 381 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII--------KPYSKHYPVYSLNV 381 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHHHHHSCSSCHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH--------HHHHHHcCCCChHH
Confidence 4578899998888776532 12232 4678999999999999999999998762 22222222 23444
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCCHHHHHHHHH
Q 037537 520 AVPYVMLANIYAASGKWEEVATIRRLMRDRGVQKKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLE 587 (677)
Q Consensus 520 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 587 (677)
..+|+.|..+|...|++++|..++++..+--.+ .-...||...++...|+
T Consensus 382 a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 382 ASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHh
Confidence 567999999999999999999999987652111 11245888877666554
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.31 E-value=0.09 Score=51.90 Aligned_cols=135 Identities=16% Similarity=0.093 Sum_probs=90.3
Q ss_pred CCcchHHHHHHHHHH--cCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc---cC-----CHHHHHHHHHHhHH
Q 037537 398 HNTVSLNSMIAGYAQ--HGI---GMEALRLFEWMLETNIPPT-NITFVSVLSACAH---TG-----KVAEGQKYFSMMKD 463 (677)
Q Consensus 398 ~~~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~---~g-----~~~~a~~~~~~m~~ 463 (677)
.+...|...+.+... .+. ..+|..+|++.++ ..|+ ...+..+.-++.. .+ ......+.++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 467788888776543 333 4789999999998 4677 3444443333321 11 11111222222211
Q ss_pred hcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 037537 464 MFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIR 543 (677)
Q Consensus 464 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 543 (677)
.-....+..+|..+.-.+...|++++|...++++ ++++| +...|..+..++.-.|++++|.+.+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rA---------------l~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTG---------------IDLEM-SWLNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------HHHCC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH---------------HhcCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1122456778888877777789999999999977 46665 5678889999999999999999999
Q ss_pred HHHHhCC
Q 037537 544 RLMRDRG 550 (677)
Q Consensus 544 ~~m~~~g 550 (677)
++.....
T Consensus 334 ~~AlrL~ 340 (372)
T 3ly7_A 334 LTAFNLR 340 (372)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 9887654
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.29 E-value=0.099 Score=58.93 Aligned_cols=103 Identities=15% Similarity=0.065 Sum_probs=66.3
Q ss_pred HHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037537 377 AMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQK 456 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 456 (677)
.....+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34567899999999987764 456899999999999999999999988743 2333344444566655544
Q ss_pred HHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 457 YFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 457 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+-+..... |. ++....+|.+.|++++|.+++.++
T Consensus 729 ~~~~a~~~-~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAETT-GK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHT-TC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHc-Cc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44433332 21 233344455566666666666555
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.18 E-value=0.02 Score=48.36 Aligned_cols=110 Identities=10% Similarity=-0.010 Sum_probs=93.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc-cChhHHHHHHHHHHh----cCChhHHHH
Q 037537 12 RRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH-ANVFSFNVLLAAYAR----QLRIASARQ 86 (677)
Q Consensus 12 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~ 86 (677)
.++.+.|...+....+.| .++.. |-..|...+.+++|.+.|.+..+ .++..+..|..+|.. .+++++|.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 357889999999999988 33333 77777777889999999998877 788889999999988 899999999
Q ss_pred HhccCCC-CCcchHHHHHHHHHh----CCChhHHHHHHHHhHhcC
Q 037537 87 LFDQIPQ-PDLVSYNTLISAYAD----CGDTESALSLFKDMREKR 126 (677)
Q Consensus 87 ~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 126 (677)
.|+...+ .+..++..|-..|.. .+++++|+..|++..+.|
T Consensus 83 ~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 9988764 577888889999988 899999999999998876
No 215
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.96 E-value=0.0019 Score=64.97 Aligned_cols=255 Identities=13% Similarity=0.081 Sum_probs=116.1
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhCCC
Q 037537 34 AYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIASARQLFDQIPQ--PDLVSYNTLISAYADCGD 111 (677)
Q Consensus 34 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~ 111 (677)
+.+|..|.++..+.+.+.+|...|=+. .|+..|..+|....+.|.+++-.+.+...++ +++..=+.|+-+|++.++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 131 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCc
Confidence 345555555555555554444333211 3444455555555555555555555544433 344444555555555555
Q ss_pred hhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchh--hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhh
Q 037537 112 TESALSLFKDMREKRFDTDGFTLSGLITASSNNLC--LIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYE 189 (677)
Q Consensus 112 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 189 (677)
..+-.+++. .||..-...+=.-|...+. .++.++ .++.-|..|...+.+.|++..|.+.-++
T Consensus 132 L~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKily---------s~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 132 LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLY---------NNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp SSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTG---------GGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHH---------HhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444322221 1222222111111111110 000000 0111112233333444444444433332
Q ss_pred cCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCC-CCchhh
Q 037537 190 MGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGF-HQNSHI 268 (677)
Q Consensus 190 m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~ 268 (677)
. .++.+|-.+-.+|...+.+.-|.-.--..+-. || -...++.-|-..|.+++-..+++.-+ |+ .....+
T Consensus 196 A---ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGm 265 (624)
T 3lvg_A 196 A---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGM 265 (624)
T ss_dssp C---CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHH
T ss_pred c---CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHH
Confidence 2 45667777777777777776665443333211 11 12234444566666666666655544 22 345566
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhCC----C-------CChhhHHHHHhhhcccCCCHHHHH
Q 037537 269 GSGLIDLYAKCSGDMRDCMKVFEEIP----Q-------PDLVLWNTMISGYSQKEEYSDQAL 319 (677)
Q Consensus 269 ~~~li~~y~~~g~~~~~A~~~f~~~~----~-------~~~~~~~~li~~~~~~~~~~~~A~ 319 (677)
++-|.-.|+|- + .++-++-++... - .....|..++--|++- .+++.|.
T Consensus 266 FTELaILYsKY-~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~y-dE~DnA~ 324 (624)
T 3lvg_A 266 FTELAILYSKF-K-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY-EEYDNAI 324 (624)
T ss_dssp HHHHHHHHHSS-C-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHH-TCHHHHH
T ss_pred HHHHHHHHHhc-C-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcc-hhHHHHH
Confidence 77777777764 2 444444433321 1 2334566666666666 6666554
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.80 E-value=0.014 Score=60.08 Aligned_cols=85 Identities=6% Similarity=-0.011 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHhh---cCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHH
Q 037537 313 EYSDQALGCFKKLNR---VGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDAR 389 (677)
Q Consensus 313 ~~~~~A~~l~~~m~~---~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 389 (677)
|++++|+.++++.++ .-+.|+.... ..+++.|...|...|++++|.
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~-------------------------------a~~~~nLa~~y~~~g~~~eA~ 360 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYM-------------------------------LHMMYQAMGVCLYMQDWEGAL 360 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHH-------------------------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHH-------------------------------HHHHHHHHHHHHhhcCHHHHH
Confidence 788899998887764 2244554333 567788888898899998888
Q ss_pred HHHhcCCC----------CC-cchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037537 390 RLFDRMPE----------HN-TVSLNSMIAGYAQHGIGMEALRLFEWMLE 428 (677)
Q Consensus 390 ~~~~~~~~----------~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 428 (677)
.++++..+ |+ ..+++.|...|..+|++++|+.+|++.++
T Consensus 361 ~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 361 KYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 88766432 11 23566666666666666666666666543
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.67 E-value=0.018 Score=44.98 Aligned_cols=59 Identities=24% Similarity=0.398 Sum_probs=51.7
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCch-hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037537 477 MIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAV-PYVMLANIYAASGKWEEVATIRRLMRDRG 550 (677)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 550 (677)
....+.+.|++++|.+.+++. ++.+|.++. .|..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~a---------------l~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEF---------------LQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH---------------HHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHH---------------HHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456678899999999999876 577888988 99999999999999999999999987653
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.61 E-value=0.093 Score=44.45 Aligned_cols=91 Identities=12% Similarity=0.061 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHHhcCCcc--ChHHHHHHHHHHhhcCChHHH
Q 037537 416 GMEALRLFEWMLETNIPPTNITFVSVLSACAHTG---KVAEGQKYFSMMKDMFGFEP--EGEHYSCMIDLLGRAGKLTDA 490 (677)
Q Consensus 416 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 490 (677)
...+.+-|.+..+.| .++..+-..+..++.+++ ++++|..+++...+. . .| ..+.+-.|.-+|.|.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 345666777777766 477777777777888887 777999999999986 3 25 244555566778999999999
Q ss_pred HHHHHhCCCCCChHHHHHHHHHhccCCCCchhHH
Q 037537 491 ERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYV 524 (677)
Q Consensus 491 ~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~ 524 (677)
.+.++.. ++++|+|..+..
T Consensus 91 ~~y~~~l---------------L~ieP~n~QA~~ 109 (152)
T 1pc2_A 91 LKYVRGL---------------LQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHH---------------HHHCTTCHHHHH
T ss_pred HHHHHHH---------------HhcCCCCHHHHH
Confidence 9999976 688887765433
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.35 E-value=0.088 Score=54.09 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=72.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-CccC-hH
Q 037537 406 MIAGYAQHGIGMEALRLFEWMLETN---IPPT----NITFVSVLSACAHTGKVAEGQKYFSMMKDMF----G-FEPE-GE 472 (677)
Q Consensus 406 li~~~~~~g~~~~A~~l~~~m~~~g---~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~ 472 (677)
.+..+.++|++++|++++++.++.. +.|+ ..+++.+..+|...|++++|..+++++.+.+ | -.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3556778899999999999998632 3344 3578889999999999999999999877542 2 2233 45
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
+++.|..+|...|++++|+.++++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7889999999999999999999876
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.18 E-value=0.14 Score=43.41 Aligned_cols=85 Identities=15% Similarity=0.024 Sum_probs=65.1
Q ss_pred cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcC---ChHHHHHHHHhCCCCCChHHHHHHHHHhccC-C-CCchh
Q 037537 448 TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAG---KLTDAERLIEAMPFNPGSIALKAANHFLQLE-P-SNAVP 522 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~-p-~~~~~ 522 (677)
...+..+++.|....+. + .++..+.-.+..++.++. +++++..++++. ++.+ | ++...
T Consensus 11 ~~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~l---------------l~~~~p~~~rd~ 73 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEEL---------------LPKGSKEEQRDY 73 (152)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH---------------HHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH---------------HhcCCccchHHH
Confidence 34456667777766654 3 378888888888999988 666899988876 3334 4 34677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 523 YVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 523 ~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+..|.-+|.+.|++++|.+.++...+.
T Consensus 74 lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 74 VFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 888999999999999999999998873
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.17 E-value=0.075 Score=41.26 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=56.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccCh-HHHHHHHHHHhh
Q 037537 406 MIAGYAQHGIGMEALRLFEWMLETNIPPTNI-TFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEG-EHYSCMIDLLGR 483 (677)
Q Consensus 406 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~ 483 (677)
....+...|++++|+..|++.++.. +.+.. .+..+..++...|++++|...|+...+. .|+. ..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL---NPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTSTHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCcHHHHHH-------
Confidence 4556778888888998888888753 33456 7777888888889999999998888865 4432 22211
Q ss_pred cCChHHHHHHHHhC
Q 037537 484 AGKLTDAERLIEAM 497 (677)
Q Consensus 484 ~g~~~~A~~~~~~m 497 (677)
+.+.+|...+++.
T Consensus 75 -~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 75 -KMVMDILNFYNKD 87 (99)
T ss_dssp -HHHHHHHHHHCCT
T ss_pred -HHHHHHHHHHHHH
Confidence 5566777777665
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.89 E-value=0.35 Score=47.70 Aligned_cols=73 Identities=8% Similarity=0.070 Sum_probs=57.2
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHH
Q 037537 398 HNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYS 475 (677)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 475 (677)
.+...|.++...+...|++++|+..+++++..+ |+...|..+-..+...|+.++|...++..... .|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL---~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL---RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcChHH
Confidence 466677777777777799999999999988864 78777777777788889999999988888754 67776654
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.67 E-value=1.3 Score=36.19 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=52.9
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 470 EGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
+.++....++.+...|+.+.-.+++.++. .-+|.++....-+.++|.+.|+..+|.+++++.-++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l---------------~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREIL---------------KNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHh---------------ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 44556666677777777777777777632 233457788999999999999999999999999999
Q ss_pred CCc
Q 037537 550 GVQ 552 (677)
Q Consensus 550 g~~ 552 (677)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 985
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.43 E-value=1.4 Score=38.27 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=75.6
Q ss_pred HHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037537 377 AMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQK 456 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 456 (677)
+.-.++|+++.|.++.+.+ .+...|..|......+|+.+-|.+.|.+..+ |..+.--|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456799999999998776 4567899999999999999999999998754 3444455666777776665
Q ss_pred HHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCC
Q 037537 457 YFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMP 498 (677)
Q Consensus 457 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (677)
+-+....+ | -++.....+.-.|+++++.+++.+..
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 54444433 2 13444445566799999999998774
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.22 E-value=0.011 Score=59.67 Aligned_cols=236 Identities=13% Similarity=0.097 Sum_probs=131.2
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHc
Q 037537 163 YASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFT 242 (677)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 242 (677)
.+.+|..|-.++.+.+++.+|.+-|-+. .|...|..+|.+..+.|.+++-+..+...++..- ++..=+.++-+|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 4567777777777777777777666554 4556677788888888888887777765554432 3333346777777
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCC------------------------CCh
Q 037537 243 SLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQ------------------------PDL 298 (677)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~------------------------~~~ 298 (677)
+.+++.+-++++. .|+..-...+.+-+...|. ++.|.-+|..+.. .++
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~l-YeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKM-YDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCC-STTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccC-HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 7777665444332 3555555566666666666 6666666665541 344
Q ss_pred hhHHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHH
Q 037537 299 VLWNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVA 377 (677)
Q Consensus 299 ~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~ 377 (677)
.+|-.+-.+|... +.+.-|.-.--.+. +.||. ...++..|...| .++-..+++..+ |++.-...+++-|.-
T Consensus 200 ktWKeV~~ACvd~-~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaI 271 (624)
T 3lvg_A 200 RTWKEVCFACVDG-KEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAI 271 (624)
T ss_dssp CSHHHHTHHHHHS-CTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHhCc-hHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHH
Confidence 5666666666655 54433322111111 12221 112222233333 333222222222 333323566777878
Q ss_pred HHHccCCHHHHHHHHhc----CCCC-------CcchHHHHHHHHHHcCChHHHH
Q 037537 378 MYSKCGNLEDARRLFDR----MPEH-------NTVSLNSMIAGYAQHGIGMEAL 420 (677)
Q Consensus 378 ~y~k~g~~~~A~~~~~~----~~~~-------~~~~~~~li~~~~~~g~~~~A~ 420 (677)
.|+|-. .++-.+.++. +.-| +...|.-++-.|.+..+++.|.
T Consensus 272 LYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 887763 3333333332 2222 4456888888888888888764
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.10 E-value=0.26 Score=38.91 Aligned_cols=74 Identities=9% Similarity=0.046 Sum_probs=51.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcC-----CccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHH
Q 037537 437 TFVSVLSACAHTGKVAEGQKYFSMMKDMFG-----FEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANH 511 (677)
Q Consensus 437 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 511 (677)
-...+...+...|+++.|...|+...+... -.+....+..|..+|.+.|++++|...+++.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a-------------- 72 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL-------------- 72 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH--------------
Confidence 344555666667777777777766665421 1234677888999999999999999998876
Q ss_pred HhccCCCCchhHHH
Q 037537 512 FLQLEPSNAVPYVM 525 (677)
Q Consensus 512 l~~l~p~~~~~~~~ 525 (677)
++++|+++.+...
T Consensus 73 -l~l~P~~~~~~~n 85 (104)
T 2v5f_A 73 -LELDPEHQRANGN 85 (104)
T ss_dssp -HHHCTTCHHHHHH
T ss_pred -HhcCCCCHHHHhh
Confidence 5677877665443
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.98 E-value=0.22 Score=47.04 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhHHhcCCccC---hHHHHHHHHHHhhc-----CChHHHHHHHHhCCCCCChHHHHHHHHHhccCCC-Cch
Q 037537 451 VAEGQKYFSMMKDMFGFEPE---GEHYSCMIDLLGRA-----GKLTDAERLIEAMPFNPGSIALKAANHFLQLEPS-NAV 521 (677)
Q Consensus 451 ~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~-~~~ 521 (677)
...|...+++..+ +.|+ -..|..|...|.+. |+.++|.+.|++. +++.|. +..
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA---------------L~LnP~~~id 240 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL---------------TRYCSAHDPD 240 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH---------------HHHCCTTCSH
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH---------------HHhCCCCCch
Confidence 4556666666664 4676 45788899999985 9999999999876 688896 499
Q ss_pred hHHHHHHHHHhc-CChHHHHHHHHHHHhCCCccCCc
Q 037537 522 PYVMLANIYAAS-GKWEEVATIRRLMRDRGVQKKPG 556 (677)
Q Consensus 522 ~~~~l~~~y~~~-g~~~~a~~~~~~m~~~g~~~~~~ 556 (677)
+++.+...|+.. |+.+++.+.+++.........|+
T Consensus 241 ~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 241 HHITYADALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 999999999985 99999999999998877654343
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.53 E-value=1.2 Score=38.70 Aligned_cols=129 Identities=11% Similarity=0.052 Sum_probs=87.4
Q ss_pred HHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHH
Q 037537 172 TCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGL 251 (677)
Q Consensus 172 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 251 (677)
.....+|+++.|.++.+++ .+...|..|.....+.|+++-|.+.|..... +..+.-.|...|+.+.-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 4566889999999999888 4567899999999999999999999988754 344444455567776666
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHH
Q 037537 252 QFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKL 325 (677)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m 325 (677)
++-+.....| -++.-...+.-.|+ ++++.++|.+....... ..+++..|..+.|.++..++
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGd-v~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNS-TKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTC-HHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCC-HHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 6655555554 23333444555588 99999888876542211 11122226667777776655
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.49 E-value=0.67 Score=37.65 Aligned_cols=92 Identities=13% Similarity=0.029 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH---HHHHHHHhHHhcCCcc--ChHHHHHHHHHHhhcCChHH
Q 037537 415 IGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAE---GQKYFSMMKDMFGFEP--EGEHYSCMIDLLGRAGKLTD 489 (677)
Q Consensus 415 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~ 489 (677)
....+.+-|.+....| .|+..+-..+..++.++..... |..+++.+.+. + .| ..+..-.|.-++.|.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 3445556666666656 4777777777778888876555 88888888764 2 24 23333455667899999999
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHH
Q 037537 490 AERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYV 524 (677)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~ 524 (677)
|.+.++.+ ++.+|.|..+..
T Consensus 93 A~~~~~~l---------------L~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGL---------------LQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHH---------------HHHCTTCHHHHH
T ss_pred HHHHHHHH---------------HHhCCCCHHHHH
Confidence 99999876 678887655433
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.30 E-value=1.9 Score=40.76 Aligned_cols=112 Identities=11% Similarity=0.074 Sum_probs=82.6
Q ss_pred ccCCHHHHHHHHhcCCCCC--cchHHHHHHH-HHHc--CC------hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHh
Q 037537 381 KCGNLEDARRLFDRMPEHN--TVSLNSMIAG-YAQH--GI------GMEALRLFEWMLETNIPPT---NITFVSVLSACA 446 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~~~--~~~~~~li~~-~~~~--g~------~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~ 446 (677)
+.|+..+-.+.+.+....+ ...|..++.+ ++.. |. ..+|..++++.++ +.|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 3455555566666665433 3467777654 3442 32 4677778888887 5677 457888888888
Q ss_pred c-----cCCHHHHHHHHHHhHHhcCCcc--ChHHHHHHHHHHhhc-CChHHHHHHHHhC
Q 037537 447 H-----TGKVAEGQKYFSMMKDMFGFEP--EGEHYSCMIDLLGRA-GKLTDAERLIEAM 497 (677)
Q Consensus 447 ~-----~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~-g~~~~A~~~~~~m 497 (677)
. -|+.++|.+.|++..+. .| +..++....+.|++. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7 49999999999999965 67 378888899999985 9999999999876
No 231
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.16 E-value=0.94 Score=34.75 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=37.4
Q ss_pred CcchHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 399 NTVSLNSMIAGYAQHGI---GMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 399 ~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
|+..|..+..++...++ .++|..+|++.++. .|+ ..+...+...+...|++++|..+|+.+.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33445555555544433 46777777777663 343 45555556666667777777777777664
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.05 E-value=2.4 Score=34.36 Aligned_cols=90 Identities=14% Similarity=-0.037 Sum_probs=63.5
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHH---HHHHHHhCCCCCChHHHHHHHHHhccCC-CC
Q 037537 444 ACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTD---AERLIEAMPFNPGSIALKAANHFLQLEP-SN 519 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~~~~~~~~l~~l~p-~~ 519 (677)
.-.....+..+.+.+...... |. |+..+--.+..++.++.+..+ +..++++.....+ | ..
T Consensus 10 ~~~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~--------------p~~~ 73 (126)
T 1nzn_A 10 ELVSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS--------------KEEQ 73 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC--------------HHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--------------cchH
Confidence 333444555666666666554 43 777777778888998887776 8888887643211 2 23
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037537 520 AVPYVMLANIYAASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 520 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 549 (677)
......|.-+|.+.|++++|.+..+.+.+.
T Consensus 74 Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 74 RDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 456778889999999999999999998773
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.09 E-value=8.9 Score=39.23 Aligned_cols=255 Identities=10% Similarity=0.064 Sum_probs=145.1
Q ss_pred CChHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHccCChHHHHHHHhhccc---cC----hhHHHHHHHHHHhcCC
Q 037537 13 RDLVTGKSLHALYLKN-----LVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH---AN----VFSFNVLLAAYARQLR 80 (677)
Q Consensus 13 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~----~~~~~~li~~~~~~g~ 80 (677)
++++.|++.+-.+.+. ....+......+++.|...|+++...+.+..+.+ .- ....+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5677787776666543 2345567788899999999999988776665554 11 1122333333333333
Q ss_pred hh--HHHHHhccCCC-CCc---------chHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhH
Q 037537 81 IA--SARQLFDQIPQ-PDL---------VSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLI 148 (677)
Q Consensus 81 ~~--~A~~~f~~m~~-~~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 148 (677)
.+ .-..+.+.... .+. .....|...|-..|++.+|.+++..+...-...+....
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~-------------- 175 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE-------------- 175 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH--------------
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH--------------
Confidence 33 23334433322 111 12356788899999999999999998753111111111
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhc-------CCCCC--eeeHHHHHHHHHhCCCchHHHHHH
Q 037537 149 KQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEM-------GEIKD--EVSWNSMVVAYGQHREGLEALQLF 219 (677)
Q Consensus 149 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-------~~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 219 (677)
-..++...+..|...+++..|..++.++ ...|+ ..-+..++..+...+++.+|-..|
T Consensus 176 --------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 176 --------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp --------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 0223355667888889999998888776 11222 223566777788889999998888
Q ss_pred HHHHHC-CCCCCHhHHHHH-----HHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcC--CCHHHHHHHHh
Q 037537 220 QEMVSL-QLGLDMYTLASI-----LTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCS--GDMRDCMKVFE 291 (677)
Q Consensus 220 ~~m~~~-g~~pd~~t~~~l-----l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~~A~~~f~ 291 (677)
.+.... ...-|...+..+ +......-+..... +.....+...-++...+..|+.+|.... . ++...+.|.
T Consensus 242 ~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~-ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~-~~~~~~~~~ 319 (445)
T 4b4t_P 242 QEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQND-LIHKIQNDNNLKKLESQESLVKLFTTNELMR-WPIVQKTYE 319 (445)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHH-HHHSHHHHSSCHHHHHHHHHHHHHHHCCSSS-HHHHHHHTC
T ss_pred HHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHH-HHHHHhhcccccccHHHHHHHHHHHhchHhh-hHHHHHHHH
Confidence 777542 111233222221 11112111222222 2222233333456778888999987742 3 677777777
Q ss_pred hCCCCC
Q 037537 292 EIPQPD 297 (677)
Q Consensus 292 ~~~~~~ 297 (677)
....++
T Consensus 320 ~~L~~~ 325 (445)
T 4b4t_P 320 PVLNED 325 (445)
T ss_dssp SSTTTC
T ss_pred HHhccc
Confidence 655433
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=89.95 E-value=6.1 Score=32.33 Aligned_cols=84 Identities=13% Similarity=0.052 Sum_probs=49.8
Q ss_pred ccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037537 381 KCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSM 460 (677)
Q Consensus 381 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 460 (677)
+||++......+-.+.. +....+.-+.....+|+-++-.+++..+... .+|++..+..+.+||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 45555555555554433 2233445556666667666666666665432 366666666666777777777777777666
Q ss_pred hHHhcCC
Q 037537 461 MKDMFGF 467 (677)
Q Consensus 461 m~~~~~~ 467 (677)
+-+. |+
T Consensus 151 AC~k-G~ 156 (172)
T 1wy6_A 151 ACKK-GE 156 (172)
T ss_dssp HHHT-TC
T ss_pred HHHh-hh
Confidence 6665 54
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.68 E-value=2.8 Score=35.03 Aligned_cols=98 Identities=11% Similarity=0.213 Sum_probs=69.6
Q ss_pred CCCcchHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHhccCCHHHHHHHHHHhHH
Q 037537 397 EHNTVSLNSMIAGYAQHGIG------MEALRLFEWMLETNIPPTNI----TFVSVLS---ACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 397 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~---a~~~~g~~~~a~~~~~~m~~ 463 (677)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+.- .+...+++++|+++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35777888888888888988 8888899988874 677632 1211111 11234789999999999987
Q ss_pred hcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 464 MFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 464 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
. +-+- ...|.....-=.|.|++..|.+++.+.
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 5 3333 666766667778999999999999764
No 236
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=88.29 E-value=2 Score=33.49 Aligned_cols=62 Identities=6% Similarity=-0.131 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 403 LNSMIAGYAQHGIGMEALRLFEWMLETN------IPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
+..|...+.+.|++..|...|+...+.- -.+....+..+..++.+.|++++|..+++.+.+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3456666777777777777777766521 1233556777777777888888888888777653
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.55 E-value=2.1 Score=46.82 Aligned_cols=53 Identities=15% Similarity=0.086 Sum_probs=44.4
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 037537 479 DLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLM 546 (677)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 546 (677)
+-+...|+++-|+++-++. ....|.+-.+|..|..+|...|+|+.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~A---------------V~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTS---------------TELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHH---------------HHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHH---------------HhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4455678888888876654 5777888999999999999999999999998877
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.14 E-value=4.5 Score=33.85 Aligned_cols=111 Identities=14% Similarity=-0.003 Sum_probs=66.4
Q ss_pred CCChhHHHHHHHHHHhcCCh------hHHHHHHhhc--CCCCC-eeeHHHHHHH------HHhCCCchHHHHHHHHHHHC
Q 037537 161 DHYASVNNSLLTCYSRNGFL------DEAKRVFYEM--GEIKD-EVSWNSMVVA------YGQHREGLEALQLFQEMVSL 225 (677)
Q Consensus 161 ~~~~~~~~~li~~~~~~g~~------~~A~~~f~~m--~~~~~-~~~~~~li~~------~~~~g~~~~A~~~~~~m~~~ 225 (677)
+.|..+|-..+...-+.|+. +..+++|++. ..+|+ -..|...|.. +...+++++|.++|+.++..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34556666666666666777 6667777766 22222 1122222211 12337888999999988765
Q ss_pred CCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHH
Q 037537 226 QLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGL 272 (677)
Q Consensus 226 g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 272 (677)
+-+- ...+.....--.+.|++..|++++...+..+..|....-+++
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 3222 444444444457788999999999988887755554433333
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.48 E-value=1.3 Score=44.55 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh----
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD---- 548 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~---- 548 (677)
....+++.+.+.|+.++|...++.. +..+|-+...|..|+.+|.+.|+..+|++.|+..++
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~---------------~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~ 237 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEAL---------------TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD 237 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3455678888999999999887765 578888999999999999999999999999988743
Q ss_pred -CCCccCC
Q 037537 549 -RGVQKKP 555 (677)
Q Consensus 549 -~g~~~~~ 555 (677)
.|+.|.|
T Consensus 238 eLG~~P~~ 245 (388)
T 2ff4_A 238 DLGIDPGP 245 (388)
T ss_dssp HHSCCCCH
T ss_pred HhCCCCCH
Confidence 5887754
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.01 E-value=5 Score=30.77 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHH
Q 037537 417 MEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL 480 (677)
Q Consensus 417 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 480 (677)
-+...-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.| +...+|..+++-
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 35556667777778899999999999999999999999999999987633 345678777653
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.51 E-value=34 Score=34.03 Aligned_cols=160 Identities=16% Similarity=0.053 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHhhccc--------cChhHHHHHHHHHHhcC-ChhHHHHHhccCCC---CCcchH---
Q 037537 35 YLSNHFILLYSKCGCLSAAHHAFNQTQH--------ANVFSFNVLLAAYARQL-RIASARQLFDQIPQ---PDLVSY--- 99 (677)
Q Consensus 35 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g-~~~~A~~~f~~m~~---~~~~~~--- 99 (677)
.....|.+.|.+.|+.++..+++..... ........|++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788889999999998888877665 33445667777776643 33333333333221 122344
Q ss_pred ---HHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 037537 100 ---NTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSR 176 (677)
Q Consensus 100 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~ 176 (677)
.-++..|...|++.+|++++.++.+.=-+.|..++ + ..++-.-+.+|..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~--l--------------------------lev~lle~~~~~~ 151 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNL--L--------------------------VEVQLLESKTYHA 151 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHH--H--------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchh--H--------------------------HHHHHHHHHHHHH
Confidence 25788999999999999999998875323332222 1 2234556678888
Q ss_pred cCChhHHHHHHhhc-----C--CCCCeeeHHHH--HHHHH-hCCCchHHHHHHHHH
Q 037537 177 NGFLDEAKRVFYEM-----G--EIKDEVSWNSM--VVAYG-QHREGLEALQLFQEM 222 (677)
Q Consensus 177 ~g~~~~A~~~f~~m-----~--~~~~~~~~~~l--i~~~~-~~g~~~~A~~~~~~m 222 (677)
.+++..+...+... . +.|.+..---. ...+. ..+++.+|...|-+.
T Consensus 152 ~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 152 LSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 89988888888665 1 12211111111 12344 678899888888665
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.20 E-value=31 Score=33.30 Aligned_cols=146 Identities=15% Similarity=0.114 Sum_probs=86.3
Q ss_pred HHHHccCCh---HHHHHHHhhccccChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 037537 42 LLYSKCGCL---SAAHHAFNQTQHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSL 118 (677)
Q Consensus 42 ~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 118 (677)
+.....|++ =+|.+.+ .++..-|.+.+++++|.+++-. -...+.+.|+...|-++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~~-----------RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQET-----------RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHHH-----------HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHH
Confidence 334456777 5555544 3455667788888888887533 23345666777666555
Q ss_pred H----HHhHhcCCCCCcccHHHHHHHhhcchh-------hHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChhHHHH
Q 037537 119 F----KDMREKRFDTDGFTLSGLITASSNNLC-------LIKQLHCLAIYCG--FDHYASVNNSLLTCYSRNGFLDEAKR 185 (677)
Q Consensus 119 ~----~~m~~~g~~p~~~t~~~ll~a~~~~~~-------~~~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 185 (677)
- +-+.+.++++|..+...++......+. ..+....+-.+.| -..|+.....+-..|.+.+++.+|+.
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 4 444556777887776666666555443 2333344445555 34566677777788888888888887
Q ss_pred HHhhcCCCCCeeeHHHHHHHHHhCC
Q 037537 186 VFYEMGEIKDEVSWNSMVVAYGQHR 210 (677)
Q Consensus 186 ~f~~m~~~~~~~~~~~li~~~~~~g 210 (677)
-|-. +..++...+..|+.-+.+.+
T Consensus 158 H~il-g~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 158 HLVL-GTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHTT-SCTTHHHHHHHHHHHHHHTS
T ss_pred HHHh-cCCchHHHHHHHHHHHHHhc
Confidence 7742 23333345544444444333
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.75 E-value=6.1 Score=39.64 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCccChHHH
Q 037537 404 NSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKD----MFGFEPEGEHY 474 (677)
Q Consensus 404 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 474 (677)
..++..+...|++++|+..+..+.... +-+...+..++.++...|+..+|++.|+...+ +.|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345666777788888888777777643 45677888888888888888888888777654 34777776543
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=82.54 E-value=55 Score=34.89 Aligned_cols=116 Identities=9% Similarity=-0.026 Sum_probs=70.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHH
Q 037537 414 GIGMEALRLFEWMLETNIPPTNIT----FVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTD 489 (677)
Q Consensus 414 g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (677)
.+.+.|..+|....+.. ..+... ...+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37899999999887543 233322 223333344455355666666665433 2333333334444557899999
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037537 490 AERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRD 548 (677)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 548 (677)
|...|+.|+..+.. .+....=+..++...|+.++|..+++.+..
T Consensus 304 a~~~~~~l~~~~~~---------------~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKE---------------KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGG---------------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccc---------------cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999743211 122233345577888999999998887653
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.27 E-value=6.3 Score=33.59 Aligned_cols=114 Identities=11% Similarity=-0.003 Sum_probs=62.6
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCC-----CCcc-------hHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-HHH
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPE-----HNTV-------SLNSMIAGYAQHGIGMEALRLFEWMLETN-IPPTN-ITF 438 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-~t~ 438 (677)
-.=+..+...|.++.|+-+.+.+.. +++. +...+..++...|++..|...|++.++.. .-|.. .+.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3445666677778877776655321 3321 34556677777888888888887765421 11111 111
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 037537 439 VSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFN 500 (677)
Q Consensus 439 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (677)
.++-. ...... .....++.+.---+..+|.+.|++++|+.+++.+|.+
T Consensus 104 ~~~~~----~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 104 PSTGN----SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccccc----cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 11100 000000 0023344555555778899999999999999999743
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.97 E-value=18 Score=29.84 Aligned_cols=75 Identities=12% Similarity=0.037 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHH
Q 037537 432 PPTNITFVSVLSACAHTG---KVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKA 508 (677)
Q Consensus 432 ~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 508 (677)
.|+..|--.+..++.++. +..++..+++.+.+. +-.-..+..--|.-++.|.|++++|+++.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l----------- 103 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL----------- 103 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH-----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHH-----------
Confidence 566655555555666655 456888899988875 22112334445566889999999999999876
Q ss_pred HHHHhccCCCCchh
Q 037537 509 ANHFLQLEPSNAVP 522 (677)
Q Consensus 509 ~~~l~~l~p~~~~~ 522 (677)
++.+|.|..+
T Consensus 104 ----L~~eP~n~QA 113 (144)
T 1y8m_A 104 ----FEHERNNKQV 113 (144)
T ss_dssp ----HHTCCCCHHH
T ss_pred ----HhcCCCcHHH
Confidence 6888876543
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.08 E-value=13 Score=30.21 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 432 PPTNITFVSVLSACAHTG---KVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 432 ~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.|+..|--.+..++.++. +..+|..+++.+.+. +-.-..+..--|.-++.|.|++++|++..+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 566555555555565555 456788999888876 31112445556667889999999999998876
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.94 E-value=40 Score=32.25 Aligned_cols=167 Identities=8% Similarity=0.099 Sum_probs=89.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHH----HHHHhhcCCCCCcchHHHHHHHhh
Q 037537 270 SGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGC----FKKLNRVGYHPDDCSFVCVISACS 345 (677)
Q Consensus 270 ~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~ 345 (677)
.++..=|.+.++ +++|.+++..- ...+.+. |+...|-++ .+-..+.++++|..+...++.-+.
T Consensus 37 Rtl~~Ry~~~~~-~~eAidlL~~g-----------a~~ll~~-~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 37 RTIANRYVRSKS-YEHAIELISQG-----------ALSFLKA-KQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHH-----------HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-HHHHHHHHHHH-----------HHHHHHC-CCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344444556566 77776664331 1122233 444444333 333344566666666555555544
Q ss_pred ccC---h---hHHHHHHHHHHHhhc-ccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHc---CC
Q 037537 346 NLS---P---SLGKQIHALTIKIEI-RSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQH---GI 415 (677)
Q Consensus 346 ~~~---~---~~~~~i~~~~~~~~~-~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 415 (677)
... . ........+..+.|- ...++.....+...|.+.|++.+|+..|-.-...+...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 432 1 222333333333332 2222778889999999999999999988643323455555555444443 33
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 416 GMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 416 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
..++ |...-.++|. +...|++..|..+|+...+.
T Consensus 184 ~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred cchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 3322 1122222332 44678888898888877654
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.91 E-value=21 Score=39.07 Aligned_cols=53 Identities=11% Similarity=0.024 Sum_probs=46.5
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCccC-hHHHHHHHHHHhhcCChHHHHHHHHhCCC
Q 037537 444 ACAHTGKVAEGQKYFSMMKDMFGFEPE-GEHYSCMIDLLGRAGKLTDAERLIEAMPF 499 (677)
Q Consensus 444 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (677)
-|...|+++.|+.+-+..... .|+ -.+|..|...|.+.|+++.|+-.++.+|.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 356789999999999998864 664 78999999999999999999999999985
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.06 E-value=25 Score=35.80 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=57.8
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCCC----C-----CcchHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC--HHH
Q 037537 373 NALVAMYSKCGNLEDARRLFDRMPE----H-----NTVSLNSMIAGYAQHGIGMEALRLFEWMLE----TNIPPT--NIT 437 (677)
Q Consensus 373 ~~li~~y~k~g~~~~A~~~~~~~~~----~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~--~~t 437 (677)
..|...|...|++.+|.+++..+.. . -+..+..-+..|...+++..|..++++... ....|+ ..-
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4566777777888888777776542 1 123455566777777888888777777542 211222 123
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 037537 438 FVSVLSACAHTGKVAEGQKYFSMMKDMFG 466 (677)
Q Consensus 438 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 466 (677)
+...+..+.+.+++.+|-+.|..+.+.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 45555566677777777777776665433
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.65 E-value=8.9 Score=29.43 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHH
Q 037537 213 LEALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLI 273 (677)
Q Consensus 213 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 273 (677)
-+..+-++.+....+.|+.....+.++||.+.+++..|.++++-+...- .....+|..++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 3555666777777888999999999999999999999999998776543 23344555554
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.14 E-value=11 Score=30.75 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHH
Q 037537 418 EALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMID 479 (677)
Q Consensus 418 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 479 (677)
+...-++.+....+.|++....+.|.+|.+.+++..|.++|+.++.+ ..+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 44555666667788999999999999999999999999999999876 3444667877765
No 253
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.55 E-value=17 Score=27.84 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=44.4
Q ss_pred HHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 037537 377 AMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFV 439 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 439 (677)
..+...|++++|..+.+.+.-||...|-+|.. .+.|..+++..-+.++-.+| .|....|.
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 44567899999999999998999999987754 45677777777777777766 55555544
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.41 E-value=52 Score=31.49 Aligned_cols=123 Identities=17% Similarity=0.169 Sum_probs=75.9
Q ss_pred HHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHH----H
Q 037537 44 YSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSL----F 119 (677)
Q Consensus 44 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~ 119 (677)
....|++=+|.+.+ .++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .
T Consensus 23 ~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 23 KIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHH
Confidence 34456666666554 4556677788888888887543 23345666777666664 3
Q ss_pred HHhHhcCCCCCcccHHHHHHHhhcchh-------hHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChhHHHHHHh
Q 037537 120 KDMREKRFDTDGFTLSGLITASSNNLC-------LIKQLHCLAIYCGF--DHYASVNNSLLTCYSRNGFLDEAKRVFY 188 (677)
Q Consensus 120 ~~m~~~g~~p~~~t~~~ll~a~~~~~~-------~~~~i~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~f~ 188 (677)
+-..+.++++|..+...++.-....+. ..+....+-.+.|- ..|+.....+-..|.+.|++.+|+.-|-
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 444556777777766666665554322 23333334444432 3467777778888888888888887665
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=77.02 E-value=62 Score=32.18 Aligned_cols=210 Identities=14% Similarity=0.078 Sum_probs=121.2
Q ss_pred HHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcchHHHHHHHhhccChhHHHHHHHHHHHhhcccCccchhHHHHHHHHcc
Q 037537 303 TMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCSFVCVISACSNLSPSLGKQIHALTIKIEIRSNRISVNNALVAMYSKC 382 (677)
Q Consensus 303 ~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~ 382 (677)
-++.-|... |++.+|+.++.++.+.--+.|..++. ..++-.-+.+|...
T Consensus 104 kL~~l~~~~-~~y~~a~~~i~~l~~~~~~~dd~~~l------------------------------lev~lle~~~~~~~ 152 (394)
T 3txn_A 104 RLIALYFDT-ALYTEALALGAQLLRELKKLDDKNLL------------------------------VEVQLLESKTYHAL 152 (394)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHTTSSCTHHH------------------------------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-hhHHHHHHHHHHHHHHHhccccchhH------------------------------HHHHHHHHHHHHHh
Confidence 466777778 99999999999888753344443332 55666677888888
Q ss_pred CCHHHHHHHHhcCCC------CCcchHHH----HHHHHH-HcCChHHHHHHHHHHHH----CCCCCC---HHHHHHHHHH
Q 037537 383 GNLEDARRLFDRMPE------HNTVSLNS----MIAGYA-QHGIGMEALRLFEWMLE----TNIPPT---NITFVSVLSA 444 (677)
Q Consensus 383 g~~~~A~~~~~~~~~------~~~~~~~~----li~~~~-~~g~~~~A~~l~~~m~~----~g~~p~---~~t~~~ll~a 444 (677)
+++.++...+..... +++..-.. -...+. ..+++..|...|-+..+ .| .|. ...|..+ .+
T Consensus 153 ~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL-~a 230 (394)
T 3txn_A 153 SNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLL-CK 230 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHH-HH
T ss_pred ccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHH-HH
Confidence 888888877765432 22211111 122345 67888988888776643 11 121 1223222 22
Q ss_pred HhccCCHHHHHHHHH-HhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhCC--CCCChHH------------HHHH
Q 037537 445 CAHTGKVAEGQKYFS-MMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAMP--FNPGSIA------------LKAA 509 (677)
Q Consensus 445 ~~~~g~~~~a~~~~~-~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~------------~~~~ 509 (677)
... ++..+-..++. .....+ ..|+...+..++.+| +.+++.+..++++... ...|... +.+.
T Consensus 231 Ll~-~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L 307 (394)
T 3txn_A 231 IML-GQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNL 307 (394)
T ss_dssp HHT-TCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 222 22222222221 212222 346666677777765 5578887777777652 2334433 2222
Q ss_pred HHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 037537 510 NHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQ 552 (677)
Q Consensus 510 ~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 552 (677)
.++ ..|-...+...|.....- ..+++.....+|...|.-
T Consensus 308 ~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 308 CRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 222 357677777777776643 678999999999988753
No 256
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.62 E-value=16 Score=27.92 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=46.1
Q ss_pred HHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 037537 377 AMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTNITFVS 440 (677)
Q Consensus 377 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 440 (677)
..+...|++++|..+.+.+.-||...|-+|.. .+.|..+++..-+.++-.+| .|....|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFAA 107 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 44567899999999999999999999987754 46787777777777887776 555555543
No 257
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.86 E-value=42 Score=29.63 Aligned_cols=79 Identities=13% Similarity=0.055 Sum_probs=32.7
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCC
Q 037537 32 FSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCG 110 (677)
Q Consensus 32 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 110 (677)
++..+-...+..+++.+..+....+.+.+..+|..+-...+.++.+.++.+....+.+.+..+|...-...+.++.+.+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3444444445555555443333333333333444444444444444444333333333333344333333333333333
No 258
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=74.09 E-value=45 Score=29.13 Aligned_cols=50 Identities=12% Similarity=0.005 Sum_probs=20.1
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCCh
Q 037537 32 FSAYLSNHFILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRI 81 (677)
Q Consensus 32 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 81 (677)
++..+-...+..+.+.+..+....+.+.+..++..+-...+..+.+.|+.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~ 75 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE 75 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH
Confidence 34444444444444444333333333333334444444444444444443
No 259
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=72.46 E-value=51 Score=29.05 Aligned_cols=174 Identities=11% Similarity=0.061 Sum_probs=82.3
Q ss_pred hccccChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHH
Q 037537 59 QTQHANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLI 138 (677)
Q Consensus 59 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 138 (677)
.+..+|..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.+.. ++...+..+..
T Consensus 27 ~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~-------------- 91 (211)
T 3ltm_A 27 NLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK-------------- 91 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT--------------
T ss_pred HHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc--------------
Confidence 333355555555566666666644444445555555554444445555555442 22222222221
Q ss_pred HHhhcchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHH
Q 037537 139 TASSNNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQL 218 (677)
Q Consensus 139 ~a~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~ 218 (677)
.+|..+-...+..+.+.|+.+....+.+.+ ..++...-...+.++.+.|.. +++..
T Consensus 92 ----------------------~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~-~~~~~ 147 (211)
T 3ltm_A 92 ----------------------DEDGWVRQSAAVALGQIGDERAVEPLIKAL-KDEDWFVRIAAAFALGEIGDE-RAVEP 147 (211)
T ss_dssp ----------------------CSSHHHHHHHHHHHHHHCCGGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG-GGHHH
T ss_pred ----------------------CCCHHHHHHHHHHHHHhCcHHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCH-HHHHH
Confidence 234444445555555555544444444444 445544445555555555543 34444
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHH
Q 037537 219 FQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAK 278 (677)
Q Consensus 219 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 278 (677)
+..+.. .+|...-...+.++...++. .+...+..+.+. ++..+-...+.++.+
T Consensus 148 L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 148 LIKALK---DEDGWVRQSAADALGEIGGE-RVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHHHHc---CCCHHHHHHHHHHHHHhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 444443 24555555556666555543 333334344332 344444444444443
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.13 E-value=29 Score=26.46 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHh
Q 037537 247 LVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLN 326 (677)
Q Consensus 247 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~ 326 (677)
-++|..+-+.+...+- ...+.-.-+..+...|+ +++|..+.+...-||.+.|-++-..-. |..+++..-+.++.
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~-Yq~Al~l~~~~c~pdlepw~ALce~rl---Gl~s~le~rL~~la 95 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGR-YQEALAFAHGNPWPALEPWFALCEWHL---GLGAALDRRLAGLG 95 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTC-HHHHHGGGTTCCCGGGHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchh-HHHHHHhcCCCCCchHHHHHHHHHHhc---ccHHHHHHHHHHHH
Confidence 3455555555544432 23333333445666788 999999999999999999999887654 77777777777777
Q ss_pred hcCCCCCcchH
Q 037537 327 RVGYHPDDCSF 337 (677)
Q Consensus 327 ~~g~~p~~~t~ 337 (677)
.+| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 3443333
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.93 E-value=31 Score=26.38 Aligned_cols=84 Identities=12% Similarity=0.085 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHHHHHHh
Q 037537 247 LVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGCFKKLN 326 (677)
Q Consensus 247 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l~~~m~ 326 (677)
-++|..+-+.+...+- ...+.-.-+..+...|+ +++|..+.+...-||.+.|-++-..-. |..+++..-+.++.
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~-Yq~Al~l~~~~c~pdlepw~ALce~rl---Gl~s~le~rL~~la 96 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGD-YASALQQGNKLAYPDLEPWLALCEYRL---GLGSALESRLNRLA 96 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTC-HHHHHHHHTTSCCGGGHHHHHHHHHHH---TCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchh-HHHHHHhcCCCCCchHHHHHHHHHHhc---ccHHHHHHHHHHHH
Confidence 3455555555544432 23333333445666788 999999999999999999999887655 77777777777777
Q ss_pred hcCCCCCcchH
Q 037537 327 RVGYHPDDCSF 337 (677)
Q Consensus 327 ~~g~~p~~~t~ 337 (677)
.+| .|....|
T Consensus 97 ~sg-~p~~q~F 106 (116)
T 2p58_C 97 RSQ-DPRIQTF 106 (116)
T ss_dssp TCC-CHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 3443333
No 262
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.38 E-value=28 Score=32.26 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=8.7
Q ss_pred HHHHcCCCHHHHHHHHh
Q 037537 275 LYAKCSGDMRDCMKVFE 291 (677)
Q Consensus 275 ~y~~~g~~~~~A~~~f~ 291 (677)
..++.|. .+-+..+++
T Consensus 225 ~A~~~~~-~~~v~~Ll~ 240 (285)
T 1wdy_A 225 LAVEKKH-LGLVQRLLE 240 (285)
T ss_dssp HHHHTTC-HHHHHHHHH
T ss_pred HHHHcCC-HHHHHHHHh
Confidence 3344455 666666665
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=70.77 E-value=29 Score=29.57 Aligned_cols=58 Identities=9% Similarity=-0.141 Sum_probs=37.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcC-CCCCh-------hhHHHHHHHHHccCChHHHHHHHhhccc
Q 037537 5 VLKTCVGRRDLVTGKSLHALYLKNL-VPFSA-------YLSNHFILLYSKCGCLSAAHHAFNQTQH 62 (677)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 62 (677)
-++.+...+.++.|..+.+.++... ..++. .++..+.+++-..|++..|...|.+...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3556667777787777777765543 22332 2455566777788888888888877554
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.44 E-value=44 Score=38.86 Aligned_cols=196 Identities=11% Similarity=0.056 Sum_probs=118.8
Q ss_pred HHHHHhhccC-hhHHHHHHHHHHHhhcccCccchhHHHHHHHHccCCHHHHHHHHhcCCC----CC--------------
Q 037537 339 CVISACSNLS-PSLGKQIHALTIKIEIRSNRISVNNALVAMYSKCGNLEDARRLFDRMPE----HN-------------- 399 (677)
Q Consensus 339 ~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~----~~-------------- 399 (677)
.++..|...+ .+.+.++.... +.+ +...-.+..+|..+|++++|.+.|.+... .+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~-~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSD-PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCC-HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCC-cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 3444454555 55544433221 222 44445567788999999999999987642 00
Q ss_pred --------cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 037537 400 --------TVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN----ITFVSVLSACAHTGKVAEGQKYFSMMKDMFGF 467 (677)
Q Consensus 400 --------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 467 (677)
..-|.-++..+-++|.++.++++-+..++..-+-+. ..|..+..++...|++++|...+-.+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--- 967 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT--- 967 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---
Confidence 012566788888999999999988887764322221 24778889999999999998888777543
Q ss_pred ccChHHHHHHHHHHhhcCChHHHHHHHHhCCCCCChH-HH-HHHHHHhcc-CCCC-chhHHHHHHHHHhcCChHHHHHH-
Q 037537 468 EPEGEHYSCMIDLLGRAGKLTDAERLIEAMPFNPGSI-AL-KAANHFLQL-EPSN-AVPYVMLANIYAASGKWEEVATI- 542 (677)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~-~~~~~l~~l-~p~~-~~~~~~l~~~y~~~g~~~~a~~~- 542 (677)
.--......||..++..|.+++-.. .|..+... ++ ....++-.. +|.+ +..|..|-.-+...|++..|..+
T Consensus 968 ~~r~~cLr~LV~~lce~~~~~~L~~----lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B 968 PLKKSCLLDFVNQLTKQGKINQLLN----YSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp SSCHHHHHHHHHHHHHHCCHHHHHH----HTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhhhhC----CCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence 2335667788888888887665443 33322111 11 111111111 2222 23456666667778888876654
Q ss_pred HHHHH
Q 037537 543 RRLMR 547 (677)
Q Consensus 543 ~~~m~ 547 (677)
++...
T Consensus 1044 Ye~~~ 1048 (1139)
T 4fhn_B 1044 YEKLS 1048 (1139)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 265
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=68.16 E-value=86 Score=30.00 Aligned_cols=53 Identities=9% Similarity=-0.055 Sum_probs=29.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHccCChHHHHHHHhhc
Q 037537 4 QVLKTCVGRRDLVTGKSLHALYLKNLVPFSAYL---SNHFILLYSKCGCLSAAHHAFNQT 60 (677)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~g~~~~a~~~~~~~ 60 (677)
++|...++.|+++....+ ++.|..++... -.+-|...+..|+.+-++-+++.-
T Consensus 27 t~L~~Av~~g~~~~V~~L----L~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g 82 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 82 (337)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred hHHHHHHHcCCHHHHHHH----HHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcC
Confidence 345555677887655544 45565554321 123344445778887777776643
No 266
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=67.74 E-value=1e+02 Score=32.95 Aligned_cols=44 Identities=25% Similarity=0.306 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhhcCCCCC--eeeHHHHHHHHHhC
Q 037537 165 SVNNSLLTCYSRNGFLDEAKRVFYEMGEIKD--EVSWNSMVVAYGQH 209 (677)
Q Consensus 165 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~--~~~~~~li~~~~~~ 209 (677)
.+| ++|-.+.|||++++|.++.++.+.... ...+-..+..|+.+
T Consensus 154 p~W-a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 154 PIW-ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp EHH-HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 355 467788899999999999988722221 24677777888743
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.73 E-value=41 Score=31.07 Aligned_cols=239 Identities=9% Similarity=0.003 Sum_probs=114.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHh
Q 037537 4 QVLKTCVGRRDLVTGKSLHALYLKNLVPFSAY---LSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYAR 77 (677)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 77 (677)
+.|...++.|+.+.... +++.|..++.. ...+.+...+..|+.+-.+.+.+.-.. .|..-. ..+...+.
T Consensus 7 ~~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQ----LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA-TPFLLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC-CHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHH----HHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC-CHHHHHHH
Confidence 45666777888765544 44555443322 123455556678888888887776443 222222 23444556
Q ss_pred cCChhHHHHHhccCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcc-------------cHHHHHHHh
Q 037537 78 QLRIASARQLFDQIPQP---DLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGF-------------TLSGLITAS 141 (677)
Q Consensus 78 ~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------t~~~ll~a~ 141 (677)
.|+.+-+..+++.-..+ |...++.|. ..+..|+.+ +++.+.+.|..++.. -.+.+..++
T Consensus 82 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 156 (285)
T 1wdy_A 82 AGSVKLLKLFLSKGADVNECDFYGFTAFM-EAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156 (285)
T ss_dssp HTCHHHHHHHHHTTCCTTCBCTTCCBHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCccCcccCCHHH-HHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHH
Confidence 78888777777764443 333333433 345566644 444455556555432 223444444
Q ss_pred hcchhhHHHHHHHHHHh-CCCCCh---hHHHHHHHHHHhcCCh---hHHHHHHhhcCCCCCee---eHHHHHHHHHhCCC
Q 037537 142 SNNLCLIKQLHCLAIYC-GFDHYA---SVNNSLLTCYSRNGFL---DEAKRVFYEMGEIKDEV---SWNSMVVAYGQHRE 211 (677)
Q Consensus 142 ~~~~~~~~~i~~~~~~~-g~~~~~---~~~~~li~~~~~~g~~---~~A~~~f~~m~~~~~~~---~~~~li~~~~~~g~ 211 (677)
.. +. ..+...+++. |..++. .-.+.|. .....|.. .+..+++-+-+..++.. -++. +...++.|+
T Consensus 157 ~~-~~--~~~v~~Ll~~~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~ 231 (285)
T 1wdy_A 157 EK-GH--VEVLKILLDEMGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP-LILAVEKKH 231 (285)
T ss_dssp HH-TC--HHHHHHHHHTSCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH-HHHHHHTTC
T ss_pred Hc-CC--HHHHHHHHHhcCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcH-HHHHHHcCC
Confidence 32 22 1233344444 554432 2233333 33444553 33333333333333322 2333 344455666
Q ss_pred chHHHHHHHHHHH-CCCCCCH---hHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCch
Q 037537 212 GLEALQLFQEMVS-LQLGLDM---YTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNS 266 (677)
Q Consensus 212 ~~~A~~~~~~m~~-~g~~pd~---~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 266 (677)
.+-+ +.+.+ .|..++. .-.+.+ ......|+.+ +.+.+++.|..++.
T Consensus 232 ~~~v----~~Ll~~~g~~~~~~~~~g~t~l-~~A~~~~~~~----i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 232 LGLV----QRLLEQEHIEINDTDSDGKTAL-LLAVELKLKK----IAELLCKRGASTDC 281 (285)
T ss_dssp HHHH----HHHHHSSSCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHHSSCSCC
T ss_pred HHHH----HHHHhccCCCccccCCCCCcHH-HHHHHcCcHH----HHHHHHHcCCCCCc
Confidence 5443 33344 4544432 222223 3333445554 45556677766654
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=65.41 E-value=37 Score=27.68 Aligned_cols=59 Identities=15% Similarity=0.154 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHH
Q 037537 214 EALQLFQEMVSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLI 273 (677)
Q Consensus 214 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 273 (677)
+..+-++.+....+.|+.......+++|.+.+|+..|.++++-+...- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 455566667777889999999999999999999999999998876543 33344565554
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.56 E-value=1e+02 Score=35.87 Aligned_cols=66 Identities=12% Similarity=0.048 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccC-CCCc----hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLE-PSNA----VPYVMLANIYAASGKWEEVATIRRLMR 547 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~-p~~~----~~~~~l~~~y~~~g~~~~a~~~~~~m~ 547 (677)
-|..++..+-+.|.++.+.++.+.. ++.. +++. ..|..+...+...|++++|...+-.+.
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lA---------------i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLA---------------DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHH---------------HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 4566777777777777777665432 2211 1221 257788889999999999999888877
Q ss_pred hCCCcc
Q 037537 548 DRGVQK 553 (677)
Q Consensus 548 ~~g~~~ 553 (677)
+...++
T Consensus 966 d~~~r~ 971 (1139)
T 4fhn_B 966 TTPLKK 971 (1139)
T ss_dssp HSSSCH
T ss_pred CHHHHH
Confidence 665554
No 270
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=58.35 E-value=92 Score=26.98 Aligned_cols=170 Identities=11% Similarity=0.049 Sum_probs=79.4
Q ss_pred cChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhh
Q 037537 63 ANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASS 142 (677)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 142 (677)
+|..+-...+..+.+.+..+....+.+.+..+|...-...+.++.+.+..+ +...+..+..
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~------------------ 86 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK------------------ 86 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT------------------
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc------------------
Confidence 555555556666666666554455555555555544444455555554432 2222222221
Q ss_pred cchhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHH
Q 037537 143 NNLCLIKQLHCLAIYCGFDHYASVNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEVSWNSMVVAYGQHREGLEALQLFQEM 222 (677)
Q Consensus 143 ~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 222 (677)
.++..+-...+..+.+.|+.+....+.+.+ ..++...-...+.++.+.+.. +++..+..+
T Consensus 87 ------------------d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~ 146 (201)
T 3ltj_A 87 ------------------DEDGWVRQSAAVALGQIGDERAVEPLIKAL-KDEDWFVRIAAAFALGEIGDE-RAVEPLIKA 146 (201)
T ss_dssp ------------------CSSHHHHHHHHHHHHHHCCGGGHHHHHHHT-TCSSHHHHHHHHHHHHHHTCG-GGHHHHHHH
T ss_pred ------------------CCCHHHHHHHHHHHHHhCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCH-HHHHHHHHH
Confidence 233344444555555555544444444444 444544444455555555543 344444444
Q ss_pred HHCCCCCCHhHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHH
Q 037537 223 VSLQLGLDMYTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAK 278 (677)
Q Consensus 223 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 278 (677)
... ++...-...+.++...++.+ +...+..+.+. ++..+-...+.++.+
T Consensus 147 l~d---~~~~vr~~A~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 147 LKD---EDGWVRQSAADALGEIGGER-VRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp TTC---SSHHHHHHHHHHHHHHCSHH-HHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred HcC---CCHHHHHHHHHHHHHhCchh-HHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 432 45555555555555555433 33333333332 334444444444333
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=56.26 E-value=64 Score=29.97 Aligned_cols=116 Identities=12% Similarity=0.135 Sum_probs=67.8
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChH----HHHHHHHHHhhc
Q 037537 409 GYAQHGIGMEALRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGE----HYSCMIDLLGRA 484 (677)
Q Consensus 409 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~ 484 (677)
...+.|..++|++....-++.. +-|...-..++.-++-.|++++|..-++...+. .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 4456777888888777777764 555666666777777888888888777777653 45432 34444432
Q ss_pred CChHHHHH-HHHhCCCCCChHHHHHHHHHhccCCCCchhHH-HHHHHH--HhcCChHHHHHHHHHHHhC
Q 037537 485 GKLTDAER-LIEAMPFNPGSIALKAANHFLQLEPSNAVPYV-MLANIY--AASGKWEEVATIRRLMRDR 549 (677)
Q Consensus 485 g~~~~A~~-~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~-~l~~~y--~~~g~~~~a~~~~~~m~~~ 549 (677)
+.+++ +|.. ...|.. +..+..|. .|+.+. ...|+.++|.+++..+.+.
T Consensus 78 ---E~~R~~vfaG-~~~P~~-------------~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ---AQARKDFAQG-AATAKV-------------LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHTTS-CCCEEC-------------CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcC-CCCCCC-------------CCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11111 1111 112211 11223344 444444 4569999999999999764
No 272
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=54.52 E-value=2.3e+02 Score=30.36 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=26.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcc
Q 037537 101 TLISAYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNN 144 (677)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 144 (677)
++|-.+.+.|++++|.++.++.... ++--...|...+..++..
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC---
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhC
Confidence 5666788999999999998766532 111124677777777644
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.67 E-value=1.2e+02 Score=26.76 Aligned_cols=90 Identities=10% Similarity=0.186 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCCCCCChHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 037537 473 HYSCMIDLLGRAGKLTDAERLIEAMPFNPGSIALKAANHFLQLEPSNAVPYVMLANIYAASGKWEEVATIRRLMRDRGVQ 552 (677)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 552 (677)
.|-..++.+ .++...++.++|.-|..+ ++.-.-+..|...+..+...|++++|.++++.=.+++-+
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~-------------~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNK-------------GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHH-------------TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHC-------------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 344444433 245567788888776321 223345677899999999999999999999887777665
Q ss_pred cCCceeEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCccc
Q 037537 553 KKPGFSWIEVKKQMHVFVAEDGSHPMIKEIHNYLEEMSRKMKQAGYVPD 601 (677)
Q Consensus 553 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~pd 601 (677)
| ...+.....+....|.+.+++.|
T Consensus 148 P-------------------------~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 148 P-------------------------YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp S-------------------------HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred c-------------------------HHHHHHHHHHHHHHHHhcCCCCC
Confidence 4 34555666777788888877433
No 274
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=53.24 E-value=1.4e+02 Score=27.70 Aligned_cols=52 Identities=10% Similarity=-0.102 Sum_probs=28.6
Q ss_pred HHHHHccCChHHHHHHHhhccccChhHHHHHHHHHHhcCChhHHHHHhccCC
Q 037537 41 ILLYSKCGCLSAAHHAFNQTQHANVFSFNVLLAAYARQLRIASARQLFDQIP 92 (677)
Q Consensus 41 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 92 (677)
+...+..|+.+-++.+++.-..++..-....+...+..|+.+-+..+++.-.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 86 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGL 86 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 3444567777777777665444222222234445556677776666666543
No 275
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=52.11 E-value=4.5 Score=24.68 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=11.7
Q ss_pred CCccccc-cCccccCCCC
Q 037537 660 TYRFHCF-KDGRCSCGDY 676 (677)
Q Consensus 660 ~~~~h~f-~~g~csc~~~ 676 (677)
+-.-|.. ++|.||||-|
T Consensus 12 CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 12 CPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp CCTTSCCCTTSSBTTTTB
T ss_pred CCCCceecCCceeccccc
Confidence 3344444 6899999976
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.87 E-value=61 Score=32.75 Aligned_cols=96 Identities=8% Similarity=-0.070 Sum_probs=57.7
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCC------CCcchHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHH
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPE------HNTVSLNSMIAGYAQHGIGMEALRLFEWMLE---TNIPPTNITFV 439 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~ 439 (677)
..+...+.+.|.++|+++.|.+.|.++.. .-+..|-..|..+...+++..+...+++... .+-.|+...-.
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 34566777888888888888888777653 1233466667777777777777777777643 22222222111
Q ss_pred --HHHHHHhccCCHHHHHHHHHHhHHh
Q 037537 440 --SVLSACAHTGKVAEGQKYFSMMKDM 464 (677)
Q Consensus 440 --~ll~a~~~~g~~~~a~~~~~~m~~~ 464 (677)
.-...+...+++..|-+.|-.....
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122234566777777777776665
No 277
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=50.83 E-value=1.8e+02 Score=28.04 Aligned_cols=165 Identities=10% Similarity=0.092 Sum_probs=86.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHhhhcccCCCHHHHHHH----HHHHhhcCCCCCcchHHHHHHHhhc
Q 037537 271 GLIDLYAKCSGDMRDCMKVFEEIPQPDLVLWNTMISGYSQKEEYSDQALGC----FKKLNRVGYHPDDCSFVCVISACSN 346 (677)
Q Consensus 271 ~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~~ 346 (677)
++..=|.+.++ +++|.+++-.- ...+.+. |+...|-++ .+-..+.++++|..+...++..+..
T Consensus 40 Ti~~Ry~~~k~-y~eAidLL~~G-----------A~~ll~~-~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 40 LVAARYSKQGN-WAAAVDILASV-----------SQTLLRS-GQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHH-----------HHHHHHT-TCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHhhcC-HHHHHHHHHHH-----------HHHHHHC-CCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44444666666 77777654321 1122233 444443333 3444456677776666666655554
Q ss_pred cC-h--h---HHHHHHHHHHHhhc-ccCccchhHHHHHHHHccCCHHHHHHHHhcCCCCCcchHHHHHHHHHHcCChHHH
Q 037537 347 LS-P--S---LGKQIHALTIKIEI-RSNRISVNNALVAMYSKCGNLEDARRLFDRMPEHNTVSLNSMIAGYAQHGIGMEA 419 (677)
Q Consensus 347 ~~-~--~---~~~~i~~~~~~~~~-~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 419 (677)
.. - + .......+..+.|- +..++.....+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+...+...
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~-- 184 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH-- 184 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG--
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc--
Confidence 44 1 1 12223334444332 22227778889999999999999999985333233345555554444433211
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037537 420 LRLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKD 463 (677)
Q Consensus 420 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 463 (677)
.+|...-.++|. |...+++..|..+++...+
T Consensus 185 ------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122222233333 3445677777776665554
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=50.58 E-value=1.6e+02 Score=28.78 Aligned_cols=65 Identities=11% Similarity=0.167 Sum_probs=43.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHhcCCCCCc---chHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHH
Q 037537 372 NNALVAMYSKCGNLEDARRLFDRMPEHNT---VSLNSMIAGYAQHGI--GMEALRLFEWMLETNIPPTNI 436 (677)
Q Consensus 372 ~~~li~~y~k~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ 436 (677)
.+.++.=|...|+.++|.+.++++..|.. +...++..++-+.++ .+....++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 36788889999999999999999987642 233444444444332 345777788887777554433
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=47.60 E-value=47 Score=30.82 Aligned_cols=115 Identities=20% Similarity=0.162 Sum_probs=77.7
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHhhccc--cChhHHHHHHHHHHhcCChhHH
Q 037537 7 KTCVGRRDLVTGKSLHALYLKNLVPFSAYLSNHFILLYSKCGCLSAAHHAFNQTQH--ANVFSFNVLLAAYARQLRIASA 84 (677)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A 84 (677)
....+.|+++++++....-++.. |-|...-..|++.++-.|+++.|.+-++...+ |+......+..-..++ +.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a---E~~ 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA---AQA 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH---HHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH---HHH
Confidence 45678899999999999999887 88899999999999999999999988887777 3332222222222222 222
Q ss_pred H-HHhccCCCC----CcchHH-HHHHHHH--hCCChhHHHHHHHHhHhc
Q 037537 85 R-QLFDQIPQP----DLVSYN-TLISAYA--DCGDTESALSLFKDMREK 125 (677)
Q Consensus 85 ~-~~f~~m~~~----~~~~~~-~li~~~~--~~g~~~~A~~~~~~m~~~ 125 (677)
+ ++|..-..| ....|- .|+.+.. ..|+.++|.++-.+..+.
T Consensus 81 R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 81 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 2 455543333 223354 4555544 358999999888887653
No 280
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.44 E-value=1.8e+02 Score=29.96 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=74.3
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHhcCCCCCc-chHHH-------HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----
Q 037537 369 ISVNNALVAMYSKCGNLEDARRLFDRMPEHNT-VSLNS-------MIAGYAQHGIGMEALRLFEWMLETNIPPTNI---- 436 (677)
Q Consensus 369 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~-~~~~~-------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---- 436 (677)
..+.|.++..|...+.++.|..+..+..-|.. .+.+. +...++-++++.+|.+.|......- +++..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CcchhhhhH
Confidence 56678999999999999999999998865532 33232 3455677899999999999887642 33321
Q ss_pred ---H--HHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 437 ---T--FVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 437 ---t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
. |..+...+ .|++.+ ..+|. .++++.....|..|+.++ |.|++++-...+++-
T Consensus 310 r~~a~K~lI~V~LL--lG~iP~-r~lf~----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h 367 (523)
T 4b4t_S 310 LQQSNKLHCCIQLL--MGDIPE-LSFFH----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKY 367 (523)
T ss_dssp HHHHHHHHHHHHHH--HTCCCC-HHHHT----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHhh--cCCCCC-hHHhh----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHh
Confidence 1 11111111 344332 12221 113333345577788776 778888777776643
No 281
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=47.03 E-value=2.3e+02 Score=28.16 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=8.8
Q ss_pred HHHhcCChhHHHHHhcc
Q 037537 74 AYARQLRIASARQLFDQ 90 (677)
Q Consensus 74 ~~~~~g~~~~A~~~f~~ 90 (677)
..++.|+.+-+..+++.
T Consensus 53 ~A~~~g~~~~v~~Ll~~ 69 (437)
T 1n11_A 53 MAARAGHTEVAKYLLQN 69 (437)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhC
Confidence 33445555555555544
No 282
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=46.63 E-value=79 Score=30.90 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=42.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCC--hHHHHHHHHHHHHhCCCCchhhHHH
Q 037537 199 WNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLED--LVGGLQFHAHLIKSGFHQNSHIGSG 271 (677)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~ 271 (677)
.+.++.-|...|+.++|.+.++++...... ..+....+..+.-+.++ .+...+++..+.+.|+-+.......
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~G 293 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 577888888899999999999888531111 12333444445444332 3456666666666665444443333
No 283
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.60 E-value=84 Score=31.70 Aligned_cols=57 Identities=11% Similarity=-0.060 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhc-----CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHH
Q 037537 166 VNNSLLTCYSRNGFLDEAKRVFYEM-----GEIKDEVSWNSMVVAYGQHREGLEALQLFQEM 222 (677)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~f~~m-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 222 (677)
+...+...|.++|++++|.+.|.++ +...-+..|-..|+.+...+++..+...+.+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3445666666666666666666666 11122233455555555666666666555554
No 284
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=45.50 E-value=1.4e+02 Score=25.45 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=9.0
Q ss_pred HhcCChhHHHHHhccC
Q 037537 76 ARQLRIASARQLFDQI 91 (677)
Q Consensus 76 ~~~g~~~~A~~~f~~m 91 (677)
+..|+.+....+++.-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 4456666666665543
No 285
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=45.12 E-value=3.7e+02 Score=30.12 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=61.7
Q ss_pred HHHHHHccCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHH---HHHHHHhc
Q 037537 375 LVAMYSKCGNLEDARRLFDRMPE--H-NTVSLNSMIAGYAQHGIGMEALRLFEWMLETNIPPTN-ITFV---SVLSACAH 447 (677)
Q Consensus 375 li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~---~ll~a~~~ 447 (677)
|.-.|.-.|+-+....++..+.+ . ++.-.-++.-|+...|+.+.+..+.+.+... +|+ .-|. ++.-+|+.
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTT
T ss_pred HhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcC
Confidence 33444455666666666554322 1 2222233344455678888888887877763 232 2232 23345667
Q ss_pred cCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhhcCChHHHHHHHHhC
Q 037537 448 TGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGRAGKLTDAERLIEAM 497 (677)
Q Consensus 448 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (677)
.|+.....+++..+.+. ...++.-...+.-++.-.|+.+.+.++++.+
T Consensus 573 TGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp SCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred CCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 77877777788877753 2223332222222233355555555555544
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.27 E-value=1e+02 Score=24.85 Aligned_cols=63 Identities=11% Similarity=0.170 Sum_probs=41.8
Q ss_pred hHHHHHHHHccCCHHHHHHHHhcCCCCCc---chHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 037537 372 NNALVAMYSKCGNLEDARRLFDRMPEHNT---VSLNSMIAGYAQHGI--GMEALRLFEWMLETNIPPT 434 (677)
Q Consensus 372 ~~~li~~y~k~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 434 (677)
.+.++.-|...|+.++|.+.++++..|.. +....+..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 36788889999999999999999876522 233344444444432 3456777777777664443
No 287
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.13 E-value=1.7e+02 Score=24.88 Aligned_cols=154 Identities=13% Similarity=0.026 Sum_probs=71.1
Q ss_pred HHHhCCChhHHHHHHHHhHhcCCCCCcccHHHHHHHhhcchhhHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChhH
Q 037537 105 AYADCGDTESALSLFKDMREKRFDTDGFTLSGLITASSNNLCLIKQLHCLAIYCGFDHYASV--NNSLLTCYSRNGFLDE 182 (677)
Q Consensus 105 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~i~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~ 182 (677)
..+..|+.+....++..-...--.+|..-.+.+..|+.... ..+...+++.|..++... ..+.+...+..|+.+-
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 87 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND---IEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEI 87 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 34567777777666643221111223333444444443322 234445556676554321 2234455566788877
Q ss_pred HHHHHhhcCCCCC---eeeHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCC---CHhHHHHHHHHHccCCChHHHHHHHH
Q 037537 183 AKRVFYEMGEIKD---EVSWNSMVVAYGQHREGLEALQLFQEMVSLQ-LGL---DMYTLASILTAFTSLEDLVGGLQFHA 255 (677)
Q Consensus 183 A~~~f~~m~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p---d~~t~~~ll~a~~~~~~~~~a~~~~~ 255 (677)
+..+++.-+..++ ..-++.| ...+..|+.+-+ +.+.+.| ..+ |..-.+.+..++........-.++.+
T Consensus 88 ~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 88 LAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNV----KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp HHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHH----HHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred HHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHH----HHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 7777755422222 2222223 334455655433 3333334 222 33333444444433322333355666
Q ss_pred HHHHhCCCCch
Q 037537 256 HLIKSGFHQNS 266 (677)
Q Consensus 256 ~~~~~g~~~~~ 266 (677)
.+++.|..++.
T Consensus 163 ~Ll~~ga~~~~ 173 (201)
T 3hra_A 163 LLMENGADQSI 173 (201)
T ss_dssp HHHHTTCCTTC
T ss_pred HHHHCCCCCCc
Confidence 66676655543
No 288
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=39.77 E-value=72 Score=28.48 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=13.9
Q ss_pred HHHHHccCCChHHHHHHHHHHHH
Q 037537 237 ILTAFTSLEDLVGGLQFHAHLIK 259 (677)
Q Consensus 237 ll~a~~~~~~~~~a~~~~~~~~~ 259 (677)
.+......++...+.++.+.+.+
T Consensus 213 ~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 213 PLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444566666667776666654
No 289
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=39.07 E-value=9.6 Score=26.57 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=18.1
Q ss_pred ceEEEecCCccccccCccccCC
Q 037537 653 REITVRDTYRFHCFKDGRCSCG 674 (677)
Q Consensus 653 ~~i~~~d~~~~h~f~~g~csc~ 674 (677)
..|=+.|.+..|+||||+-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4677899999999999986543
No 290
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=38.14 E-value=13 Score=22.93 Aligned_cols=12 Identities=25% Similarity=0.935 Sum_probs=10.0
Q ss_pred cccccCCccchh
Q 037537 633 NLRICGDCHNAI 644 (677)
Q Consensus 633 nl~~~~~~~~~~ 644 (677)
++|+|.+|+.-+
T Consensus 16 ~YRvC~~CgkPi 27 (44)
T 2lo3_A 16 QYRVCEKCGKPL 27 (44)
T ss_dssp CEEECTTTCCEE
T ss_pred cchhhcccCCcc
Confidence 799999998544
No 291
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.24 E-value=1.1e+02 Score=24.65 Aligned_cols=62 Identities=19% Similarity=0.346 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCC---cchHHHHHHHHHhCCC--hhHHHHHHHHhHhcCCCC
Q 037537 68 FNVLLAAYARQLRIASARQLFDQIPQPD---LVSYNTLISAYADCGD--TESALSLFKDMREKRFDT 129 (677)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 129 (677)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4567777777888888888888876552 2233344445544432 355667777777665433
No 292
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=36.85 E-value=1.8e+02 Score=23.99 Aligned_cols=67 Identities=6% Similarity=-0.076 Sum_probs=48.2
Q ss_pred ccChHHHHHHHHHHhhcCChH---HHHHHHHhCCCCCChHHHHHHHHHhccCCC-CchhHHHHHHHHHhcCChHHHHHHH
Q 037537 468 EPEGEHYSCMIDLLGRAGKLT---DAERLIEAMPFNPGSIALKAANHFLQLEPS-NAVPYVMLANIYAASGKWEEVATIR 543 (677)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~-~~~~~~~l~~~y~~~g~~~~a~~~~ 543 (677)
.|+..+--.+..++.++.+.+ ++..++++. +.-+|. ......-|.-+|.+.|++++|.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l---------------~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~ 100 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDI---------------YKEAESRRRECLYYLTIGCYKLGEYSMAKRYV 100 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHH---------------HHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH---------------HhcCccchhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 567777666777888877655 455666554 333442 3345667888999999999999999
Q ss_pred HHHHhC
Q 037537 544 RLMRDR 549 (677)
Q Consensus 544 ~~m~~~ 549 (677)
+.+.+.
T Consensus 101 d~lL~~ 106 (144)
T 1y8m_A 101 DTLFEH 106 (144)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 998774
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.42 E-value=95 Score=28.22 Aligned_cols=86 Identities=12% Similarity=-0.011 Sum_probs=42.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHH--CCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHH
Q 037537 407 IAGYAQHGIGMEALRLFEWMLE--TNIPP----TNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDL 480 (677)
Q Consensus 407 i~~~~~~g~~~~A~~l~~~m~~--~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 480 (677)
+..+..+.++++|++++++..+ .++++ +.......+..-.....-.-+..+.+.+.. .++...-...+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~----~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS----SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT----CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHH
Confidence 4556666667777666665543 12221 111222222222222222223333333321 3455556666778
Q ss_pred HhhcCChHHHHHHHHh
Q 037537 481 LGRAGKLTDAERLIEA 496 (677)
Q Consensus 481 ~~~~g~~~~A~~~~~~ 496 (677)
+.|.|+-++|.++|=+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 8888888888888744
No 294
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.19 E-value=80 Score=30.12 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHHccCCC--hHHHHHHHHHHHHhCCCCchhhH
Q 037537 199 WNSMVVAYGQHREGLEALQLFQEMVSLQLGLDMYTLASILTAFTSLED--LVGGLQFHAHLIKSGFHQNSHIG 269 (677)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~ 269 (677)
.+.++.-|...|+.++|.+.++++...... .......+..+.-+.++ .+...+++..+.+.|+-+.....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~ 240 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMK 240 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 567888898899999999999988531111 12333444445544332 45566777777777655444433
No 295
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=34.24 E-value=2.4e+02 Score=24.77 Aligned_cols=83 Identities=11% Similarity=0.089 Sum_probs=53.2
Q ss_pred HHHHHHHhcCCC--CCcc---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 037537 386 EDARRLFDRMPE--HNTV---SLNSMIAGYAQHGIGMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFS 459 (677)
Q Consensus 386 ~~A~~~~~~~~~--~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 459 (677)
+.+.+.|..... .|+. .|-..+..+ ..+...++.++|..|...|+--. ..-|......+...|++.+|.++|+
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555655543 3332 344444433 13335688888888888776555 4556666667777888888888888
Q ss_pred HhHHhcCCccC
Q 037537 460 MMKDMFGFEPE 470 (677)
Q Consensus 460 ~m~~~~~~~p~ 470 (677)
.-++. +-+|-
T Consensus 140 ~GI~~-~A~P~ 149 (202)
T 3esl_A 140 LGAEN-NCRPY 149 (202)
T ss_dssp HHHHT-TCBSH
T ss_pred HHHHc-CCccH
Confidence 87776 66674
No 296
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=34.23 E-value=3e+02 Score=27.16 Aligned_cols=327 Identities=12% Similarity=0.013 Sum_probs=161.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcC
Q 037537 5 VLKTCVGRRDLVTGKSLHALYLKNLVPFSAY--LSNHFILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQL 79 (677)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g 79 (677)
.|...+..|+.+.... +++.|..++.. ...+.+...+..|+.+-++.+.+.-.. .+..- ...+...++.|
T Consensus 17 ~L~~Aa~~g~~~~v~~----Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKN----LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-QTPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHH----HHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS-CCHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHHCC
Confidence 4555666777755444 44556544432 123445556678888888888775443 22221 23345556778
Q ss_pred ChhHHHHHhccCCCCC---cchHHHHHHHHHhCCChhHHHHHHHHhHhcCCCCC---cccHHHHHHHhhcchhhHHHHHH
Q 037537 80 RIASARQLFDQIPQPD---LVSYNTLISAYADCGDTESALSLFKDMREKRFDTD---GFTLSGLITASSNNLCLIKQLHC 153 (677)
Q Consensus 80 ~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~~~i~~ 153 (677)
+.+-..-+++.-..++ ...++.| ...++.|+.+-+..+++ .+..++ ...++.+..|+.. +. ..+..
T Consensus 92 ~~~~v~~Ll~~ga~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~-g~--~~~v~ 163 (437)
T 1n11_A 92 HTNMVKLLLENNANPNLATTAGHTPL-HIAAREGHVETVLALLE----KEASQACMTKKGFTPLHVAAKY-GK--VRVAE 163 (437)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHT-TC--HHHHH
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHH-HHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCHHHHHHHc-CC--HHHHH
Confidence 8888888877654433 2223333 34456677665555443 343322 2223334444332 22 22344
Q ss_pred HHHHhCCCCChh--HHHHHHHHHHhcCChhHHHHHHhhcCCCCCee---eHHHHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 037537 154 LAIYCGFDHYAS--VNNSLLTCYSRNGFLDEAKRVFYEMGEIKDEV---SWNSMVVAYGQHREGLEALQLFQEMVSLQLG 228 (677)
Q Consensus 154 ~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 228 (677)
.+++.|..++.. ...+.+...+..|+.+-...+++.- ..++.. .++.| ...+..|+.+ +.+.+.+.|..
T Consensus 164 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~ 237 (437)
T 1n11_A 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPL-HIAAKQNQVE----VARSLLQYGGS 237 (437)
T ss_dssp HHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGT-CCSCCCCTTCCCHH-HHHHHTTCHH----HHHHHHHTTCC
T ss_pred HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCcCCCCCCHH-HHHHHcCCHH----HHHHHHHcCCC
Confidence 555666655432 1223455566778877666666553 333322 23333 3445566644 34444455544
Q ss_pred CCH---hHHHHHHHHHccCCChHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhh
Q 037537 229 LDM---YTLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSH--IGSGLIDLYAKCSGDMRDCMKVFEEIP---QPDLVL 300 (677)
Q Consensus 229 pd~---~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~~A~~~f~~~~---~~~~~~ 300 (677)
++. ...+.+. ..+..|+.+... .+++.|..++.. ...+.+...++.|. .+-+..+++.-. ..|...
T Consensus 238 ~~~~~~~g~t~L~-~A~~~g~~~~v~----~Ll~~~~~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~g~~~~~~~~~g 311 (437)
T 1n11_A 238 ANAESVQGVTPLH-LAAQEGHAEMVA----LLLSKQANGNLGNKSGLTPLHLVAQEGH-VPVADVLIKHGVMVDATTRMG 311 (437)
T ss_dssp TTCCCTTCCCHHH-HHHHTTCHHHHH----HHHTTTCCTTCCCTTCCCHHHHHHHHTC-HHHHHHHHHHTCCTTCCCSSC
T ss_pred CCCCCCCCCCHHH-HHHHCCCHHHHH----HHHhcCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHhCCccCCCCCCCC
Confidence 432 2222233 334556655444 344455443321 11223333445577 777777776533 233334
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHhhcCCCCCcch---HHHHHHHhhccC-hhHHHHHHHHHHHhhcccC
Q 037537 301 WNTMISGYSQKEEYSDQALGCFKKLNRVGYHPDDCS---FVCVISACSNLS-PSLGKQIHALTIKIEIRSN 367 (677)
Q Consensus 301 ~~~li~~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~~-~~~~~~i~~~~~~~~~~~~ 367 (677)
++.|..+.. . |+.+ +.+.+.+.|..++... .+.+..|+ ..+ .+ +...+++.|.+++
T Consensus 312 ~t~L~~A~~-~-g~~~----~v~~Ll~~gad~n~~~~~g~t~L~~A~-~~g~~~----iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 312 YTPLHVASH-Y-GNIK----LVKFLLQHQADVNAKTKLGYSPLHQAA-QQGHTD----IVTLLLKNGASPN 371 (437)
T ss_dssp CCHHHHHHH-S-SCSH----HHHHHHHTTCCTTCCCTTSCCHHHHHH-HTTCHH----HHHHHHHTTCCSC
T ss_pred CCHHHHHHH-c-CcHH----HHHHHHhcCCCCCCCCCCCCCHHHHHH-HCChHH----HHHHHHHCcCCCC
Confidence 445544433 3 5543 3344455666655432 33444444 334 54 4445556676665
No 297
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=34.05 E-value=80 Score=23.50 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCccc----hhhhhhhhhHHHHHHHh
Q 037537 579 IKEIHNYLEEMSRKMKQAGYVPD----KEKRLVHHSEKLAVAFG 618 (677)
Q Consensus 579 ~~~i~~~l~~l~~~~~~~g~~pd----~~~~~~~~~~~la~~~~ 618 (677)
..+|...+++....++..||.|| -....-+-++.+-..||
T Consensus 15 lirIl~~ieekinELk~dG~ePDIiL~G~eayef~~e~v~~e~g 58 (103)
T 2pk8_A 15 LIRILGEIEEKMNELKMDGFNPDIILFGREAYNFLSNLLKKEME 58 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEEECHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEcHHHHHHHHHHHhHhhc
Confidence 45677888888888899999999 23333444555556666
No 298
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=33.46 E-value=5.6e+02 Score=28.75 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=26.6
Q ss_pred HHhcCChhHHHHHHhhcCCC----CCe--eeHHHHHHHHHhCCCchHHHHHHHHHHH
Q 037537 174 YSRNGFLDEAKRVFYEMGEI----KDE--VSWNSMVVAYGQHREGLEALQLFQEMVS 224 (677)
Q Consensus 174 ~~~~g~~~~A~~~f~~m~~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 224 (677)
....|+.+++..+++.. .. .+. ..-..+.-|....|..+++++++.....
T Consensus 384 lIh~g~~~~gl~~L~~y-L~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~ 439 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPY-LPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIV 439 (963)
T ss_dssp HHTSSCTTTHHHHHTTT-STTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHh-ccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Confidence 44556777777777765 22 111 1122333445556665667776666554
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.32 E-value=93 Score=26.01 Aligned_cols=63 Identities=11% Similarity=0.181 Sum_probs=41.3
Q ss_pred hHHHHHHHHccCCHHHHHHHHhcCCCCC---cchHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 037537 372 NNALVAMYSKCGNLEDARRLFDRMPEHN---TVSLNSMIAGYAQHGI--GMEALRLFEWMLETNIPPT 434 (677)
Q Consensus 372 ~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 434 (677)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3678888999999999999999987652 2233344444444322 3456677777776664433
No 300
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=32.63 E-value=2.5e+02 Score=24.52 Aligned_cols=21 Identities=5% Similarity=-0.160 Sum_probs=10.2
Q ss_pred HHHHccCCChHHHHHHHHHHH
Q 037537 238 LTAFTSLEDLVGGLQFHAHLI 258 (677)
Q Consensus 238 l~a~~~~~~~~~a~~~~~~~~ 258 (677)
+....+.|+.+-++.+++...
T Consensus 214 l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHHcCcHHHHHHHHHhhh
Confidence 333445566665555554433
No 301
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=32.59 E-value=2e+02 Score=27.74 Aligned_cols=87 Identities=14% Similarity=0.063 Sum_probs=42.4
Q ss_pred HHHHHccCChHHHHHHHhhccc---cChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHH
Q 037537 41 ILLYSKCGCLSAAHHAFNQTQH---ANVFSFNVLLAAYARQLRIASARQLFDQIPQPDLVSYNTLISAYADCGDTESALS 117 (677)
Q Consensus 41 l~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 117 (677)
|...+..|+.+.++.+++.-.. .|..-.+ .+...+..|+.+-+..+++.-..++...-.+.+..-+..|+.+-+..
T Consensus 24 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~ 102 (364)
T 3ljn_A 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCT-ALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVA 102 (364)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHH
Confidence 3334456777766666655332 2221122 23444456666666666665544333222223333445666666555
Q ss_pred HHHHhHhcCCC
Q 037537 118 LFKDMREKRFD 128 (677)
Q Consensus 118 ~~~~m~~~g~~ 128 (677)
+++.-...|..
T Consensus 103 Ll~~~~~~~~~ 113 (364)
T 3ljn_A 103 LVEGAKERGQM 113 (364)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHhccccCCC
Confidence 55554433433
No 302
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.35 E-value=90 Score=26.08 Aligned_cols=61 Identities=18% Similarity=0.338 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCC---cchHHHHHHHHHhCCC--hhHHHHHHHHhHhcCCC
Q 037537 68 FNVLLAAYARQLRIASARQLFDQIPQPD---LVSYNTLISAYADCGD--TESALSLFKDMREKRFD 128 (677)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 128 (677)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4566777777778888888777776542 2233344444444322 34566677777665543
No 303
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.61 E-value=2.8e+02 Score=24.36 Aligned_cols=54 Identities=15% Similarity=0.047 Sum_probs=26.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHccCChHHHHHHHh
Q 037537 5 VLKTCVGRRDLVTGKSLHALYLKNLVPFSAYL--SNHFILLYSKCGCLSAAHHAFN 58 (677)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~ 58 (677)
.|...+..|+.+....+++.+.+.+..++... ..+.+...+..|+.+-.+.+.+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 34455566776666666666555554333211 1122333344555554444444
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.39 E-value=1.9e+02 Score=26.18 Aligned_cols=23 Identities=22% Similarity=0.063 Sum_probs=18.0
Q ss_pred HHHHHHhCCChhHHHHHHHHhHh
Q 037537 102 LISAYADCGDTESALSLFKDMRE 124 (677)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~ 124 (677)
-+..+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46778888889999888887654
No 305
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=29.67 E-value=75 Score=26.57 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=13.6
Q ss_pred chhHHHHHHHHccCCHHHHHHHHhcCC
Q 037537 370 SVNNALVAMYSKCGNLEDARRLFDRMP 396 (677)
Q Consensus 370 ~~~~~li~~y~k~g~~~~A~~~~~~~~ 396 (677)
..|-.....+...|++++|.++|+.-.
T Consensus 102 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 102 PLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444445555555555555555433
No 306
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.54 E-value=2.8e+02 Score=24.15 Aligned_cols=13 Identities=8% Similarity=0.192 Sum_probs=5.9
Q ss_pred ccCChHHHHHHHh
Q 037537 46 KCGCLSAAHHAFN 58 (677)
Q Consensus 46 ~~g~~~~a~~~~~ 58 (677)
+.|+++..+.+++
T Consensus 18 ~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 18 QYGIYERCRELVE 30 (240)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHH
Confidence 4444444444443
No 307
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.81 E-value=64 Score=29.44 Aligned_cols=88 Identities=9% Similarity=-0.039 Sum_probs=51.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCChhh-------HHHHHHHHH--ccCChHHHHHHHhhcccc------------
Q 037537 5 VLKTCVGRRDLVTGKSLHALYLKNLVPFSAYL-------SNHFILLYS--KCGCLSAAHHAFNQTQHA------------ 63 (677)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ll~~~~--~~g~~~~a~~~~~~~~~~------------ 63 (677)
.|...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-++.+++.-..+
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 34455677899988888888888876655332 233333332 567777777777653321
Q ss_pred --ChhHHHHHHHHHHhcCChhHHHHHhccCCC
Q 037537 64 --NVFSFNVLLAAYARQLRIASARQLFDQIPQ 93 (677)
Q Consensus 64 --~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 93 (677)
|..-. ..+...+..|+.+-+..+++.-..
T Consensus 88 ~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 88 DVYYRGQ-TALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp CSSEESB-CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccCCC-CHHHHHHHcCCHHHHHHHHhCCCC
Confidence 11112 233444566777777766665444
No 308
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=27.90 E-value=3.5e+02 Score=24.64 Aligned_cols=16 Identities=13% Similarity=-0.093 Sum_probs=6.8
Q ss_pred chhhHHHHHHHHHHcC
Q 037537 265 NSHIGSGLIDLYAKCS 280 (677)
Q Consensus 265 ~~~~~~~li~~y~~~g 280 (677)
+..+-...+.++.+.|
T Consensus 205 ~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 205 NEEVRIEAIIGLSYRK 220 (280)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3344444444444444
No 309
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=27.20 E-value=2.8e+02 Score=23.38 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChH
Q 037537 417 MEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGE 472 (677)
Q Consensus 417 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 472 (677)
+++.++|..|...|+--. ..-|......+-..|++.+|.++|+.-++. +-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHH
Confidence 447788999988887655 455666666777888999999999888887 7777543
No 310
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=26.92 E-value=2.5e+02 Score=22.73 Aligned_cols=67 Identities=6% Similarity=-0.076 Sum_probs=47.1
Q ss_pred ccChHHHHHHHHHHhhcCChH---HHHHHHHhCCCCCChHHHHHHHHHhccCCC-CchhHHHHHHHHHhcCChHHHHHHH
Q 037537 468 EPEGEHYSCMIDLLGRAGKLT---DAERLIEAMPFNPGSIALKAANHFLQLEPS-NAVPYVMLANIYAASGKWEEVATIR 543 (677)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~l~~l~p~-~~~~~~~l~~~y~~~g~~~~a~~~~ 543 (677)
.|+..+--.+..++.++...+ ++..++++. ++-+|. ....+.-|+-++.+.|++++|.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l---------------~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~ 101 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDI---------------YKEAESRRRECLYYLTIGCYKLGEYSMAKRYV 101 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH---------------HHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHH---------------HhcCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 466666666667777776654 466666554 333342 3456778899999999999999999
Q ss_pred HHHHhC
Q 037537 544 RLMRDR 549 (677)
Q Consensus 544 ~~m~~~ 549 (677)
+.+.+.
T Consensus 102 d~lL~~ 107 (134)
T 3o48_A 102 DTLFEH 107 (134)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 988763
No 311
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.66 E-value=3.6e+02 Score=24.06 Aligned_cols=24 Identities=8% Similarity=-0.078 Sum_probs=11.8
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCC
Q 037537 207 GQHREGLEALQLFQEMVSLQLGLD 230 (677)
Q Consensus 207 ~~~g~~~~A~~~~~~m~~~g~~pd 230 (677)
++.|+.+....+++.+.+.|..++
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcc
Confidence 344555555555555544444433
No 312
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=24.79 E-value=3e+02 Score=22.87 Aligned_cols=53 Identities=11% Similarity=0.201 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC
Q 037537 417 MEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE 470 (677)
Q Consensus 417 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 470 (677)
+++.++|..|...|+--. ..-|......+-..|++.+|.++|+.-++. +-+|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 447888888888876555 455666666777788888888888888776 66664
No 313
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.00 E-value=3.4e+02 Score=24.21 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccC
Q 037537 416 GMEALRLFEWMLETNIPPT-NITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPE 470 (677)
Q Consensus 416 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 470 (677)
.+++.++|..|...||--. ..-|......+-..|++.+|..+|+.-++. +-+|-
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 184 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPF 184 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 3577789999988887655 456667777777889999999999888877 76774
No 314
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.38 E-value=4.3e+02 Score=25.31 Aligned_cols=60 Identities=15% Similarity=0.273 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhCCCCCh---hhHHHHHhhhcccCCCHHHHHHHHHHHhhcCC
Q 037537 270 SGLIDLYAKCSGDMRDCMKVFEEIPQPDL---VLWNTMISGYSQKEEYSDQALGCFKKLNRVGY 330 (677)
Q Consensus 270 ~~li~~y~~~g~~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~~~~~~~A~~l~~~m~~~g~ 330 (677)
..++.=|...|+ +++|.+.++++..|.. +....+..++-+.....+.+..++..+.+.|+
T Consensus 15 ~~ll~Ey~~~~d-~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 15 KAIIEEYLHLND-MKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHCC-HHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 457777777788 9999999998876532 23333444444331234556677777776654
No 315
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.93 E-value=94 Score=28.19 Aligned_cols=88 Identities=9% Similarity=-0.053 Sum_probs=51.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHcc---CChHHHHHHHhhccccC---------
Q 037537 4 QVLKTCVGRRDLVTGKSLHALYLKNLVPFSA-------YLSNHFILLYSKC---GCLSAAHHAFNQTQHAN--------- 64 (677)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~--------- 64 (677)
+.|...+..|+.+....+++.+++.|..++. .-.+.|..+ +.. |+.+-++.+++.-..++
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 82 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ 82 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCC
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCcccchhhhcccc
Confidence 3455566778898888888888888765443 233334333 344 77777776665433311
Q ss_pred -----hhHHHHHHHHHHhcCChhHHHHHhccCCC
Q 037537 65 -----VFSFNVLLAAYARQLRIASARQLFDQIPQ 93 (677)
Q Consensus 65 -----~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 93 (677)
.. ....+...+..|+.+-+..+++.-..
T Consensus 83 ~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~ 115 (256)
T 2etb_A 83 CTDEFYQ-GHSALHIAIEKRSLQCVKLLVENGAD 115 (256)
T ss_dssp CCSTTTT-TCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccccc-CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 11 22334445567777777777766443
No 316
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=22.89 E-value=51 Score=16.54 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=14.0
Q ss_pred cCChHHHHHHHHHHHhC
Q 037537 533 SGKWEEVATIRRLMRDR 549 (677)
Q Consensus 533 ~g~~~~a~~~~~~m~~~ 549 (677)
.++++.|..++.+|.++
T Consensus 3 mnrydqaatlrakmekr 19 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKR 19 (26)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 46789999999999764
No 317
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.29 E-value=5.2e+02 Score=24.72 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=33.9
Q ss_pred HHHHHHHHccCChHHHHHHHhhccccCh---hHHHHHHHHHHhc-CChhHHHHHhccCCCCCcchHHHHHHHHHh
Q 037537 38 NHFILLYSKCGCLSAAHHAFNQTQHANV---FSFNVLLAAYARQ-LRIASARQLFDQIPQPDLVSYNTLISAYAD 108 (677)
Q Consensus 38 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 108 (677)
..++.=|...|+.++|.+.+..+..|.. .+...+..+.-+. ..-+.+.+++..+.+.+..+-..+..|+.+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~ 89 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYE 89 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4456666666777777777777665321 1112221111111 112333444444444555555555555543
No 318
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.16 E-value=4.4e+02 Score=23.88 Aligned_cols=15 Identities=0% Similarity=-0.033 Sum_probs=5.9
Q ss_pred CchhhHHHHHHHHHH
Q 037537 264 QNSHIGSGLIDLYAK 278 (677)
Q Consensus 264 ~~~~~~~~li~~y~~ 278 (677)
++..+-...+.++++
T Consensus 140 ~~~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 140 KSTNVRRATAFAISV 154 (280)
T ss_dssp SCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHh
Confidence 333333333333333
No 319
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=21.52 E-value=18 Score=18.99 Aligned_cols=13 Identities=46% Similarity=1.400 Sum_probs=8.1
Q ss_pred cccCccc--cCCCCC
Q 037537 665 CFKDGRC--SCGDYW 677 (677)
Q Consensus 665 ~f~~g~c--sc~~~~ 677 (677)
.|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 4677777 366555
No 320
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=21.03 E-value=34 Score=27.83 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=27.5
Q ss_pred CCcEEEEe----cccccCCccchhhhHhhhcCceEEEecCCccccccCccccC
Q 037537 625 GEPILVMK----NLRICGDCHNAIKFISAIAGREITVRDTYRFHCFKDGRCSC 673 (677)
Q Consensus 625 ~~~~~~~~----nl~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~f~~g~csc 673 (677)
...+||+. +.++|-+| .++..-..-.+.-+||+|+++.|-.
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~~ 88 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQVY 88 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCEE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEEE
Confidence 45567764 36666666 3444444456889999999998743
No 321
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.77 E-value=90 Score=28.33 Aligned_cols=86 Identities=16% Similarity=0.052 Sum_probs=42.0
Q ss_pred HHHHHhCCChhHHHHHHHHhHhcCCCCCc-------ccHHHHHHHhhc--chh--hHHHHHHHHHHhCCC----------
Q 037537 103 ISAYADCGDTESALSLFKDMREKRFDTDG-------FTLSGLITASSN--NLC--LIKQLHCLAIYCGFD---------- 161 (677)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~--~~~--~~~~i~~~~~~~g~~---------- 161 (677)
+...++.|+.+....+++.+.+.|..++. .-.+.+..|+.. .+. ..+.+...-...+..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 34455667777776677766666655443 333444444443 122 444444333222210
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHhh
Q 037537 162 HYASVNNSLLTCYSRNGFLDEAKRVFYE 189 (677)
Q Consensus 162 ~~~~~~~~li~~~~~~g~~~~A~~~f~~ 189 (677)
.|.. ..+.+...+..|+.+-+..+++.
T Consensus 86 ~d~~-g~t~L~~A~~~g~~~~v~~Ll~~ 112 (256)
T 2etb_A 86 EFYQ-GHSALHIAIEKRSLQCVKLLVEN 112 (256)
T ss_dssp TTTT-TCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cccc-CCCHHHHHHHcCCHHHHHHHHHc
Confidence 0111 22334445566777666666655
No 322
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.58 E-value=1.1e+02 Score=20.69 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=23.6
Q ss_pred hhHHHHHHHHhHhcCCCCCcccHHHHHHHh
Q 037537 112 TESALSLFKDMREKRFDTDGFTLSGLITAS 141 (677)
Q Consensus 112 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 141 (677)
.++|.+.|.+|++..-.+...||..+++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 468899999988876666678888888776
No 323
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.31 E-value=4.7e+02 Score=24.86 Aligned_cols=15 Identities=0% Similarity=-0.053 Sum_probs=8.7
Q ss_pred HHcCCCHHHHHHHHhh
Q 037537 277 AKCSGDMRDCMKVFEE 292 (677)
Q Consensus 277 ~~~g~~~~~A~~~f~~ 292 (677)
+..|. .+-+..+++.
T Consensus 181 ~~~g~-~~~v~~Ll~~ 195 (364)
T 3ljn_A 181 MEFRN-REALDLMMDT 195 (364)
T ss_dssp HHTTC-HHHHHHHHHH
T ss_pred HHcCC-HHHHHHHHhc
Confidence 34455 6666666654
No 324
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=20.20 E-value=3.5e+02 Score=25.75 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCccChHHHHHHHHHHhh----cCChHHHHHHHHh
Q 037537 421 RLFEWMLETNIPPTNITFVSVLSACAHTGKVAEGQKYFSMMKDMFGFEPEGEHYSCMIDLLGR----AGKLTDAERLIEA 496 (677)
Q Consensus 421 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 496 (677)
++++.+.+.|+.|...++.-++..+++.=.++.+.++|+.+... |..--.....+++..... +.+.++..+++++
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~-g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQ-GTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHC-CcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Q ss_pred -CCCCCChHHHHHHHHHhccC
Q 037537 497 -MPFNPGSIALKAANHFLQLE 516 (677)
Q Consensus 497 -m~~~~~~~~~~~~~~l~~l~ 516 (677)
.+.-+...+....++++++.
T Consensus 288 ~~p~~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 288 TLPNLGLVQMEKTINQVFEMD 308 (331)
T ss_dssp TTTCCCHHHHHHHHHHHHHCC
T ss_pred hCCCCCHHHHHHHHHHHHhCC
Done!