BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037538
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 154/369 (41%), Gaps = 43/369 (11%)
Query: 73 CSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLN 132
C + L L++ G IP ++ N + L ++L N G IP +G L KL+DL
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 133 LTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPA 192
L N L G+IP L + L + ND G+IP L + T L I L + LTG IP
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 193 WVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVN 252
W+G +L +L L+ N+ G+IP ELG +L + L N
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL--------------------NTN 548
Query: 253 YFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNF 312
F G+IP ++ S G I NF + K V + D + G N
Sbjct: 549 LFNGTIPAAMFKQS-------------GKIAANFIAGKRYVYIKNDGMKKECHGAG--NL 593
Query: 313 LKF-------LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI 365
L+F L ++ + +GG + N + + L M YN++ G IP I
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN-NGSMMFLDMSYNMLSGYIPKEI 652
Query: 366 XXXXXXXXXXXXXXXXXXXXPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425
P+ +G L L L+L++NK G +P ++ LT+L+ + +
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 426 ENRFEGSIP 434
N G IP
Sbjct: 713 NNNLSGPIP 721
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 118/417 (28%), Positives = 192/417 (46%), Gaps = 19/417 (4%)
Query: 53 LQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQN 112
L+++ +S+ N VG S G + L + ++ G + + NL +++ N
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSN 210
Query: 113 RFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLIS 172
F IP +G LQ L+++ N LSG +S CTEL+ S+N F+G IP +
Sbjct: 211 NFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LP 267
Query: 173 LTKLEIIRLGTSNLTGNIPAWV-GNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYE 231
L L+ + L + TG IP ++ G +L L L+ N+ +G++P G S L L
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 232 NFIS-----DVGLTLPNLKIFAGGVNYFTGSIPVSLSN-ASNLQVLDFAENGLTGTI-PE 284
N S D L + LK+ N F+G +P SL+N +++L LD + N +G I P
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 285 NFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLS 344
+ K+ ++ + QN + +I L+NC+ L L L+ N G +P S+ +LS
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIP-----PTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 345 THLRILTMGYNLMHGNIPVGIXXXXXXXXXXXXXXXXXXXXPEVIGRLNKLEGLELNANK 404
LR L + N++ G IP + P + L + L+ N+
Sbjct: 443 -KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 405 FSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVXXXXXXXXXGTIPKEV 461
+G +P +G L L+ L + N F G+IP LG+C+ L GTIP +
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 108/406 (26%), Positives = 177/406 (43%), Gaps = 25/406 (6%)
Query: 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIP-EEIGRLQKLQDLNLTYNYL 138
+T L L G++P G+ + L + L N F G++P + + +++ L+ L+L++N
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 139 SGKIPTNLSHCT-ELRSFEASANDFIGQIPDQLISLTK--LEIIRLGTSNLTGNIPAWVG 195
SG++P +L++ + L + + S+N+F G I L K L+ + L + TG IP +
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 196 NFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENF----ISDVGLTLPNLKIFAGGV 251
N S L L L+ N L G+IP+ LG LS L L+ N I + + L+
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 252 NYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSR---EIG 308
N TG IP LSN +NL + + N LTG IP+ G L++L L N E+G
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 309 DLNFLKFLANCTSL-----------EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLM 357
D L +L T+L + +A N G+ + I N G NL+
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG-NLL 594
Query: 358 --HGNIPVGIXXXXXXXXXXXXXXXXXXXXPEVIGRLNKLEGLELNANKFSGFMPSSLGN 415
G + + L+++ N SG++P +G+
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654
Query: 416 LTVLSRLLMEENRFEGSIPPSLGNCKKLQVXXXXXXXXXGTIPKEV 461
+ L L + N GSIP +G+ + L + G IP+ +
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 120/459 (26%), Positives = 190/459 (41%), Gaps = 75/459 (16%)
Query: 41 LLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQL-VGSIPASIG 99
L+ FK+ L ++ W+ + + C + GVTC + +VT + L SK L VG S
Sbjct: 17 LISFKDVLPDK--NLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSS 72
Query: 100 NLTNLTGINLFQNRFH--GQIPEEIGRLQKLQDLNLTYNYLSGKIP--TNLSHCTELRSF 155
L+ +LF + H G + L L+L+ N LSG + T+L C+ L+
Sbjct: 73 LLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131
Query: 156 EASAN--DFIGQIPDQLISLTKLEIIRLGTSNLTG-NIPAWV--GNFSSLQVLLLARNNL 210
S+N DF G++ L L LE++ L ++++G N+ WV L+ L ++ N +
Sbjct: 132 NVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190
Query: 211 HGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQV 270
G + DV + NL+ N F+ IP L + S LQ
Sbjct: 191 SGDV---------------------DVSRCV-NLEFLDVSSNNFSTGIPF-LGDCSALQH 227
Query: 271 LDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQN 330
LD + N L+G + +L LN N+ +G + L SL+ L LA+N
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQF----VGPIPPLPL----KSLQYLSLAEN 279
Query: 331 GFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIXXXXXXXXXXXXXXXXXXXXP-EVI 389
F GE+P ++ L L + N +G +P P + +
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339
Query: 390 GRLNKLEGLELNANKFSGFMPSSLGNLTV---------------------------LSRL 422
++ L+ L+L+ N+FSG +P SL NL+ L L
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 423 LMEENRFEGSIPPSLGNCKKLQVXXXXXXXXXGTIPKEV 461
++ N F G IPP+L NC +L GTIP +
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 122/298 (40%), Gaps = 55/298 (18%)
Query: 14 LLQLALPFESLYSKNLESATIEADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTC 73
+L+ +P E +Y K LE+ +LDF + + P + + N NW+ +
Sbjct: 453 MLEGEIPQELMYVKTLETL--------ILDFNDLTGEIPSGLSNCTN-----LNWISL-- 497
Query: 74 SPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNL 133
SN R+T G IP IG L NL + L N F G IP E+G + L L+L
Sbjct: 498 --SNNRLT----------GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 134 TYNYLSGKIPTNL--------SHCTELRSFEASAND--------------FIGQIPDQLI 171
N +G IP + ++ + + ND F G +QL
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605
Query: 172 SLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYE 231
L+ + + G+ N S+ L ++ N L G IP E+G + L L
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665
Query: 232 NFIS-----DVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPE 284
N IS +VG L L I N G IP ++S + L +D + N L+G IPE
Sbjct: 666 NDISGSIPDEVG-DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 154/369 (41%), Gaps = 43/369 (11%)
Query: 73 CSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLN 132
C + L L++ G IP ++ N + L ++L N G IP +G L KL+DL
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 133 LTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPA 192
L N L G+IP L + L + ND G+IP L + T L I L + LTG IP
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 193 WVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVN 252
W+G +L +L L+ N+ G+IP ELG +L + L N
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL--------------------NTN 545
Query: 253 YFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNF 312
F G+IP ++ S G I NF + K V + D + G N
Sbjct: 546 LFNGTIPAAMFKQS-------------GKIAANFIAGKRYVYIKNDGMKKECHGAG--NL 590
Query: 313 LKF-------LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI 365
L+F L ++ + +GG + N + + L M YN++ G IP I
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN-NGSMMFLDMSYNMLSGYIPKEI 649
Query: 366 XXXXXXXXXXXXXXXXXXXXPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425
P+ +G L L L+L++NK G +P ++ LT+L+ + +
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 426 ENRFEGSIP 434
N G IP
Sbjct: 710 NNNLSGPIP 718
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 118/417 (28%), Positives = 192/417 (46%), Gaps = 19/417 (4%)
Query: 53 LQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQN 112
L+++ +S+ N VG S G + L + ++ G + + NL +++ N
Sbjct: 150 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSN 207
Query: 113 RFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLIS 172
F IP +G LQ L+++ N LSG +S CTEL+ S+N F+G IP +
Sbjct: 208 NFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LP 264
Query: 173 LTKLEIIRLGTSNLTGNIPAWV-GNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYE 231
L L+ + L + TG IP ++ G +L L L+ N+ +G++P G S L L
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 232 NFIS-----DVGLTLPNLKIFAGGVNYFTGSIPVSLSN-ASNLQVLDFAENGLTGTI-PE 284
N S D L + LK+ N F+G +P SL+N +++L LD + N +G I P
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 285 NFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLS 344
+ K+ ++ + QN + +I L+NC+ L L L+ N G +P S+ +LS
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIP-----PTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Query: 345 THLRILTMGYNLMHGNIPVGIXXXXXXXXXXXXXXXXXXXXPEVIGRLNKLEGLELNANK 404
LR L + N++ G IP + P + L + L+ N+
Sbjct: 440 -KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 405 FSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVXXXXXXXXXGTIPKEV 461
+G +P +G L L+ L + N F G+IP LG+C+ L GTIP +
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 108/406 (26%), Positives = 177/406 (43%), Gaps = 25/406 (6%)
Query: 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIP-EEIGRLQKLQDLNLTYNYL 138
+T L L G++P G+ + L + L N F G++P + + +++ L+ L+L++N
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 139 SGKIPTNLSHCT-ELRSFEASANDFIGQIPDQLISLTK--LEIIRLGTSNLTGNIPAWVG 195
SG++P +L++ + L + + S+N+F G I L K L+ + L + TG IP +
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 196 NFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENF----ISDVGLTLPNLKIFAGGV 251
N S L L L+ N L G+IP+ LG LS L L+ N I + + L+
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 252 NYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSR---EIG 308
N TG IP LSN +NL + + N LTG IP+ G L++L L N E+G
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 309 DLNFLKFLANCTSL-----------EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLM 357
D L +L T+L + +A N G+ + I N G NL+
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG-NLL 591
Query: 358 --HGNIPVGIXXXXXXXXXXXXXXXXXXXXPEVIGRLNKLEGLELNANKFSGFMPSSLGN 415
G + + L+++ N SG++P +G+
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 651
Query: 416 LTVLSRLLMEENRFEGSIPPSLGNCKKLQVXXXXXXXXXGTIPKEV 461
+ L L + N GSIP +G+ + L + G IP+ +
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 120/459 (26%), Positives = 190/459 (41%), Gaps = 75/459 (16%)
Query: 41 LLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQL-VGSIPASIG 99
L+ FK+ L ++ W+ + + C + GVTC + +VT + L SK L VG S
Sbjct: 14 LISFKDVLPDK--NLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSS 69
Query: 100 NLTNLTGINLFQNRFH--GQIPEEIGRLQKLQDLNLTYNYLSGKIP--TNLSHCTELRSF 155
L+ +LF + H G + L L+L+ N LSG + T+L C+ L+
Sbjct: 70 LLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 128
Query: 156 EASAN--DFIGQIPDQLISLTKLEIIRLGTSNLTG-NIPAWV--GNFSSLQVLLLARNNL 210
S+N DF G++ L L LE++ L ++++G N+ WV L+ L ++ N +
Sbjct: 129 NVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 187
Query: 211 HGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQV 270
G + DV + NL+ N F+ IP L + S LQ
Sbjct: 188 SGDV---------------------DVSRCV-NLEFLDVSSNNFSTGIPF-LGDCSALQH 224
Query: 271 LDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQN 330
LD + N L+G + +L LN N+ +G + L SL+ L LA+N
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQF----VGPIPPLPL----KSLQYLSLAEN 276
Query: 331 GFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIXXXXXXXXXXXXXXXXXXXXP-EVI 389
F GE+P ++ L L + N +G +P P + +
Sbjct: 277 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 336
Query: 390 GRLNKLEGLELNANKFSGFMPSSLGNLTV---------------------------LSRL 422
++ L+ L+L+ N+FSG +P SL NL+ L L
Sbjct: 337 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 396
Query: 423 LMEENRFEGSIPPSLGNCKKLQVXXXXXXXXXGTIPKEV 461
++ N F G IPP+L NC +L GTIP +
Sbjct: 397 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 102/254 (40%), Gaps = 52/254 (20%)
Query: 82 VLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGK 141
L L+ L G IP+ + N TNL I+L NR G+IP+ IGRL+ L L L+ N SG
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 142 IPTNLSHCTELRSFEASANDF-----------IGQIPDQLISLTKLEII----------- 179
IP L C L + + N F G+I I+ + I
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 586
Query: 180 ----------------RLGTSN--------LTGNIPAWVGNFSSLQVLLLARNNLHGSIP 215
RL T N G+ N S+ L ++ N L G IP
Sbjct: 587 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 216 NELGQLSALGFFTLYENFIS-----DVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQV 270
E+G + L L N IS +VG L L I N G IP ++S + L
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVG-DLRGLNILDLSSNKLDGRIPQAMSALTMLTE 705
Query: 271 LDFAENGLTGTIPE 284
+D + N L+G IPE
Sbjct: 706 IDLSNNNLSGPIPE 719
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%)
Query: 77 NGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYN 136
NG + L + L G IP IG++ L +NL N G IP+E+G L+ L L+L+ N
Sbjct: 628 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Query: 137 YLSGKIPTNLSHCTELRSFEASANDFIGQIPD 168
L G+IP +S T L + S N+ G IP+
Sbjct: 688 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 114/284 (40%), Gaps = 40/284 (14%)
Query: 37 DKLALLDFKNHLTQDPLQIMSSWNDSVHFCN--WVGVTCSPSNG--RVTVLKLES----- 87
DK ALL K L +SSW + CN W+GV C RV L L
Sbjct: 7 DKQALLQIKKDLGNP--TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64
Query: 88 ----------------------KQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRL 125
LVG IP +I LT L + + G IP+ + ++
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 126 QKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKL-EIIRLGTS 184
+ L L+ +YN LSG +P ++S L N G IPD S +KL + + +
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 185 NLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS----DVGLT 240
LTG IP N +L + L+RN L G G L +N ++ VGL+
Sbjct: 185 RLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 241 LPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPE 284
NL N G++P L+ L L+ + N L G IP+
Sbjct: 244 -KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 110/257 (42%), Gaps = 30/257 (11%)
Query: 190 IPAWVGNFSSLQVLLLAR-NNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFA 248
IP+ + N L L + NNL G IP + +L+ L + + +S
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS------------- 114
Query: 249 GGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIG 308
G+IP LS L LDF+ N L+GT+P + SL +LV + FD N + S I
Sbjct: 115 -------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI-SGAIP 166
Query: 309 DLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIXXX 368
D ++ F TS+ + ++N G++P + ANL +L + + N++ G+ V
Sbjct: 167 D-SYGSFSKLFTSMTI---SRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSD 220
Query: 369 XXXXXXXXXXXXXXXXXPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENR 428
+V G L GL+L N+ G +P L L L L + N
Sbjct: 221 KNTQKIHLAKNSLAFDLGKV-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 429 FEGSIPPSLGNCKKLQV 445
G IP GN ++ V
Sbjct: 280 LCGEIPQG-GNLQRFDV 295
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 98 IGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157
+G NL G++L NR +G +P+ + +L+ L LN+++N L G+IP L+ F+
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG----GNLQRFDV 295
Query: 158 SA 159
SA
Sbjct: 296 SA 297
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 29/75 (38%)
Query: 386 PEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQV 445
P I +L +L L + SG +P L + L L N G++PPS+ + L
Sbjct: 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153
Query: 446 XXXXXXXXXGTIPKE 460
G IP
Sbjct: 154 ITFDGNRISGAIPDS 168
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 107/421 (25%), Positives = 175/421 (41%), Gaps = 96/421 (22%)
Query: 30 ESATIEADKLAL-----LDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNG--RVTV 82
+ T++AD+L + +++ N+LTQ ++F N +P ++
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQ------------INFSNNQLTDITPLKNLTKLVD 89
Query: 83 LKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142
+ + + Q+ P + NLTNLTG+ LF N+ P + L L L L+ N +S
Sbjct: 90 ILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI- 144
Query: 143 PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQV 202
+ LS T L+ S+N P L +LT LE + + +SN +I + + ++L+
Sbjct: 145 -SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDI-SSNKVSDI-SVLAKLTNLES 199
Query: 203 LLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSL 262
L+ N + P LG L+ L +L N + D+G +L
Sbjct: 200 LIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----------------------TL 235
Query: 263 SNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSL 322
++ +NL LD A N ++ P L L L +LG+ +I +++ L L T+L
Sbjct: 236 ASLTNLTDLDLANNQISNLAP--LSGLTKLTEL-----KLGANQISNISPLAGLTALTNL 288
Query: 323 EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIXXXXXXXXXXXXXXXXX 382
E L +N PIS NL +L LT+ +N + PV
Sbjct: 289 E---LNENQLEDISPIS--NLK-NLTYLTLYFNNISDISPV------------------- 323
Query: 383 XXXPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKK 442
L KL+ L + NK S SSL NLT ++ L N+ P L N +
Sbjct: 324 -------SSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTR 372
Query: 443 L 443
+
Sbjct: 373 I 373
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 150/342 (43%), Gaps = 66/342 (19%)
Query: 30 ESATIEADKLAL-----LDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNG--RVTV 82
+ T++AD+L + +++ N+LTQ ++F N +P ++
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQ------------INFSNNQLTDITPLKNLTKLVD 89
Query: 83 LKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142
+ + + Q+ P + NLTNLTG+ LF N+ P + L L L L+ N +S
Sbjct: 90 ILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI- 144
Query: 143 PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQV 202
+ LS T L+ S+N P L +LT LE + + +SN +I + + ++L+
Sbjct: 145 -SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDI-SSNKVSDI-SVLAKLTNLES 199
Query: 203 LLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSL 262
L+ N + P LG L+ L +L N + D+G +L
Sbjct: 200 LIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----------------------TL 235
Query: 263 SNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSL 322
++ +NL LD A N ++ P L L L +LG+ +I +++ L L T+L
Sbjct: 236 ASLTNLTDLDLANNQISNLAP--LSGLTKLTEL-----KLGANQISNISPLAGLTALTNL 288
Query: 323 EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVG 364
E L +N PIS NL +L LT+ +N + PV
Sbjct: 289 E---LNENQLEDISPIS--NLK-NLTYLTLYFNNISDISPVS 324
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 150/342 (43%), Gaps = 66/342 (19%)
Query: 30 ESATIEADKLAL-----LDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNG--RVTV 82
+ T++AD+L + +++ N+LTQ ++F N +P ++
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQ------------INFSNNQLTDITPLKNLTKLVD 89
Query: 83 LKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142
+ + + Q+ P + NLTNLTG+ LF N+ P + L L L L+ N +S
Sbjct: 90 ILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI- 144
Query: 143 PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQV 202
+ LS T L+ S+N P L +LT LE + + +SN +I + + ++L+
Sbjct: 145 -SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDI-SSNKVSDI-SVLAKLTNLES 199
Query: 203 LLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSL 262
L+ N + P LG L+ L +L N + D+G +L
Sbjct: 200 LIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----------------------TL 235
Query: 263 SNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSL 322
++ +NL LD A N ++ P L L L +LG+ +I +++ L L T+L
Sbjct: 236 ASLTNLTDLDLANNQISNLAP--LSGLTKLTEL-----KLGANQISNISPLAGLTALTNL 288
Query: 323 EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVG 364
E L +N PIS NL +L LT+ +N + PV
Sbjct: 289 E---LNENQLEDISPIS--NLK-NLTYLTLYFNNISDISPVS 324
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 107/423 (25%), Positives = 176/423 (41%), Gaps = 101/423 (23%)
Query: 30 ESATIEADKLAL-----LDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNG--RVTV 82
+ T++AD+L + +++ N+LTQ ++F N +P ++
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQ------------INFSNNQLTDITPLKNLTKLVD 89
Query: 83 LKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142
+ + + Q+ P + NLTNLTG+ LF N+ P + L L L L+ N +S
Sbjct: 90 ILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI- 144
Query: 143 PTNLSHCTELRSFEASANDFIGQIPD--QLISLTKLEIIRLGTSNLTGNIPAWVGNFSSL 200
+ LS T L+ +F Q+ D L +LT LE + + +SN +I + + ++L
Sbjct: 145 -SALSGLTSLQQL-----NFGNQVTDLKPLANLTTLERLDI-SSNKVSDI-SVLAKLTNL 196
Query: 201 QVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPV 260
+ L+ N + P LG L+ L +L N + D+G
Sbjct: 197 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG---------------------- 232
Query: 261 SLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCT 320
+L++ +NL LD A N ++ P L L L +LG+ +I +++ L L T
Sbjct: 233 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL-----KLGANQISNISPLAGLTALT 285
Query: 321 SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIXXXXXXXXXXXXXXX 380
+LE L +N PIS NL +L LT+ +N + PV
Sbjct: 286 NLE---LNENQLEDISPIS--NLK-NLTYLTLYFNNISDISPV----------------- 322
Query: 381 XXXXXPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNC 440
L KL+ L + NK S SSL NLT ++ L N+ P L N
Sbjct: 323 ---------SSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 369
Query: 441 KKL 443
++
Sbjct: 370 TRI 372
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 107/423 (25%), Positives = 175/423 (41%), Gaps = 101/423 (23%)
Query: 30 ESATIEADKLAL-----LDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNG--RVTV 82
+ T++AD+L + +++ N+LTQ ++F N +P ++
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQ------------INFSNNQLTDITPLKNLTKLVD 89
Query: 83 LKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142
+ + + Q+ P + NLTNLTG+ LF N+ P + L L L L+ N +S
Sbjct: 90 ILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI- 144
Query: 143 PTNLSHCTELRSFEASANDFIGQIPD--QLISLTKLEIIRLGTSNLTGNIPAWVGNFSSL 200
+ LS T L+ +F Q+ D L +LT LE + + +SN +I + + ++L
Sbjct: 145 -SALSGLTSLQQL-----NFGNQVTDLKPLANLTTLERLDI-SSNKVSDI-SVLAKLTNL 196
Query: 201 QVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPV 260
+ L+ N + P LG L+ L +L N + D+G
Sbjct: 197 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG---------------------- 232
Query: 261 SLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCT 320
+L++ +NL LD A N ++ P L L L +LG+ +I +++ L L T
Sbjct: 233 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL-----KLGANQISNISPLAGLTALT 285
Query: 321 SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIXXXXXXXXXXXXXXX 380
+LE L +N PIS NL +L LT+ +N + PV
Sbjct: 286 NLE---LNENQLEDISPIS--NLK-NLTYLTLYFNNISDISPV----------------- 322
Query: 381 XXXXXPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNC 440
L KL+ L NK S SSL NLT ++ L N+ P L N
Sbjct: 323 ---------SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 369
Query: 441 KKL 443
++
Sbjct: 370 TRI 372
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 152/344 (44%), Gaps = 71/344 (20%)
Query: 30 ESATIEADKLAL-----LDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNG--RVTV 82
+ T++AD+L + +++ N+LTQ ++F N +P ++
Sbjct: 47 QVTTLQADRLGIKSIDGVEYLNNLTQ------------INFSNNQLTDITPLKNLTKLVD 94
Query: 83 LKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142
+ + + Q+ P + NLTNLTG+ LF N+ P + L L L L+ N +S
Sbjct: 95 ILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS--- 147
Query: 143 PTNLSHCTELRSFEASANDFIGQIPD--QLISLTKLEIIRLGTSNLTGNIPAWVGNFSSL 200
++S + L S + + F Q+ D L +LT LE + + +SN +I + + ++L
Sbjct: 148 --DISALSGLTSLQQLS--FGNQVTDLKPLANLTTLERLDI-SSNKVSDI-SVLAKLTNL 201
Query: 201 QVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPV 260
+ L+ N + P LG L+ L +L N + D+G
Sbjct: 202 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG---------------------- 237
Query: 261 SLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCT 320
+L++ +NL LD A N ++ P L L L +LG+ +I +++ L L T
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL-----KLGANQISNISPLAGLTALT 290
Query: 321 SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVG 364
+LE L +N PIS NL +L LT+ +N + PV
Sbjct: 291 NLE---LNENQLEDISPIS--NLK-NLTYLTLYFNNISDISPVS 328
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 106/423 (25%), Positives = 176/423 (41%), Gaps = 101/423 (23%)
Query: 30 ESATIEADKLAL-----LDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNG--RVTV 82
+ T++AD+L + +++ N+LTQ ++F N +P ++
Sbjct: 46 QVTTLQADRLGIKSIDGVEYLNNLTQ------------INFSNNQLTDITPLKNLTKLVD 93
Query: 83 LKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142
+ + + Q+ P + NLTNLTG+ LF N+ P + L L L L+ N +S
Sbjct: 94 ILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS--- 146
Query: 143 PTNLSHCTELRSFEASANDFIGQIPD--QLISLTKLEIIRLGTSNLTGNIPAWVGNFSSL 200
++S + L S + + F Q+ D L +LT LE + + +SN +I + + ++L
Sbjct: 147 --DISALSGLTSLQQLS--FGNQVTDLKPLANLTTLERLDI-SSNKVSDI-SVLAKLTNL 200
Query: 201 QVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPV 260
+ L+ N + P LG L+ L +L N + D+G
Sbjct: 201 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG---------------------- 236
Query: 261 SLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCT 320
+L++ +NL LD A N ++ P L L L +LG+ +I +++ L L T
Sbjct: 237 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL-----KLGANQISNISPLAGLTALT 289
Query: 321 SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIXXXXXXXXXXXXXXX 380
+LE L +N PIS NL +L LT+ +N + PV
Sbjct: 290 NLE---LNENQLEDISPIS--NLK-NLTYLTLYFNNISDISPV----------------- 326
Query: 381 XXXXXPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNC 440
L KL+ L NK S SSL NLT ++ L N+ P L N
Sbjct: 327 ---------SSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 373
Query: 441 KKL 443
++
Sbjct: 374 TRI 376
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 70/178 (39%), Gaps = 34/178 (19%)
Query: 257 SIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316
S+P + ++ + LD GL F L L LN D N+L + G + L
Sbjct: 28 SVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL--- 82
Query: 317 ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIXXXXXXXXXXX 376
T L LGLA N +P+ + + T L L +G N + ++P G
Sbjct: 83 ---TELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSG------------ 125
Query: 377 XXXXXXXXXPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIP 434
V RL KL+ L LN N+ + LT L L + N+ + S+P
Sbjct: 126 -----------VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 63/150 (42%), Gaps = 7/150 (4%)
Query: 83 LKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142
L L+S L A+ LT LT +NL N+ L +L L L N L+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 143 PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWV-GNFSSLQ 201
H T+L N LTKL+ +RL T+ L +IPA ++LQ
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQ 158
Query: 202 VLLLARNNLHGSIP----NELGQLSALGFF 227
L L+ N L S+P + LG+L + F
Sbjct: 159 TLSLSTNQLQ-SVPHGAFDRLGKLQTITLF 187
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 70/178 (39%), Gaps = 34/178 (19%)
Query: 257 SIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316
S+P + ++ + LD GL F L L LN D N+L + G + L
Sbjct: 28 SVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL--- 82
Query: 317 ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIXXXXXXXXXXX 376
T L LGLA N +P+ + + T L L +G N + ++P G
Sbjct: 83 ---TELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSG------------ 125
Query: 377 XXXXXXXXXPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIP 434
V RL KL+ L LN N+ + LT L L + N+ + S+P
Sbjct: 126 -----------VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 63/150 (42%), Gaps = 7/150 (4%)
Query: 83 LKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142
L L+S L A+ LT LT +NL N+ L +L L L N L+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 143 PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWV-GNFSSLQ 201
H T+L N LTKL+ +RL T+ L +IPA ++LQ
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQ 158
Query: 202 VLLLARNNLHGSIP----NELGQLSALGFF 227
L L+ N L S+P + LG+L + F
Sbjct: 159 TLSLSTNQLQ-SVPHGAFDRLGKLQTITLF 187
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 112/261 (42%), Gaps = 37/261 (14%)
Query: 83 LKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTY---NYLS 139
L L Q+ P S NL LT + + N+ +I LQ L +L Y + +S
Sbjct: 71 LNLNGNQITDISPLS--NLVKLTNLYIGTNKI-----TDISALQNLTNLRELYLNEDNIS 123
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSS 199
P L++ T+ S AN + + L + T L + + S + P + N +
Sbjct: 124 DISP--LANLTKXYSLNLGANHNLSDLS-PLSNXTGLNYLTVTESKVKDVTP--IANLTD 178
Query: 200 LQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG-----LTLPNLKIFAGGVNYF 254
L L L N + P L L++L +FT Y N I+D+ L +LKI G N
Sbjct: 179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANXTRLNSLKI---GNNKI 233
Query: 255 TGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLK 314
T P L+N S L L+ N ++ + ++KDL +L +GS +I D++ L
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQIS-----DINAVKDLTKLKXLN--VGSNQISDISVLN 284
Query: 315 FLANCTSLEVLGLAQNGFGGE 335
N + L L L N G E
Sbjct: 285 ---NLSQLNSLFLNNNQLGNE 302
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 39/207 (18%)
Query: 101 LTNLTGINLF---QNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157
L+N TG+N +++ P I L L L+L YN + P L+ T L F A
Sbjct: 151 LSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA 206
Query: 158 SANDFIGQIPD--QLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP 215
++ QI D + + T+L +++G + +T P + N S L L + N + S
Sbjct: 207 ----YVNQITDITPVANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI--SDI 258
Query: 216 NELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAE 275
N + L+ L + N ISD+ + L+N S L L
Sbjct: 259 NAVKDLTKLKXLNVGSNQISDISV----------------------LNNLSQLNSLFLNN 296
Query: 276 NGLTGTIPENFGSLKDLVRLNFDQNEL 302
N L E G L +L L QN +
Sbjct: 297 NQLGNEDXEVIGGLTNLTTLFLSQNHI 323
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 7/164 (4%)
Query: 271 LDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQN 330
LDF+ N LT T+ EN G L +L L N+L +E+ + + SL+ L ++QN
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQL--KELSKI--AEMTTQMKSLQQLDISQN 384
Query: 331 GFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIXXXXXXXXXXXXXXXXXXXXPEVIG 390
+ + + L L M N++ I P+ +
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTI---FRCLPPRIKVLDLHSNKIKSIPKQVV 441
Query: 391 RLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIP 434
+L L+ L + +N+ LT L ++ + N ++ S P
Sbjct: 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 190 IPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNL 244
+PA + N S+L+VL L+ N L S+P ELG L +F ++N ++ + NL
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNL 315
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 17/95 (17%)
Query: 238 GLTLPNLKIFAGGVNYFT--------------GSIPVSLSNASNLQVLDFAENGLTGTIP 283
L L NL+IF N F +P + N SNL+VLD + N LT ++P
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLP 286
Query: 284 ENFGSLKDLVRLNFDQNELGS--REIGDLNFLKFL 316
GS L F N + + E G+L L+FL
Sbjct: 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
Query: 216 NELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAE 275
NELG++S+ G F LP+L N TG P + AS++Q L E
Sbjct: 39 NELGRISSDGLFG-----------RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87
Query: 276 NGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGF 332
N + + F L L LN N++ G L SL L LA N F
Sbjct: 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL------NSLTSLNLASNPF 138
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 83 LKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142
L+L+ QL G P + +++ + L +N+ + L +L+ LNL N +S +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 143 PTNLSHCTELRSFEASANDF 162
P + H L S ++N F
Sbjct: 119 PGSFEHLNSLTSLNLASNPF 138
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 177 EIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD 236
E+ R+ + L G +P V L L RN L G PN S + L EN I +
Sbjct: 40 ELGRISSDGLFGRLPHLVK-------LELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 237 VG----LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAEN 276
+ L L LK N + +P S + ++L L+ A N
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 256 GSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKF 315
S+P + +N Q+L +N +T P F SL +L L N+LG+ +G + L
Sbjct: 32 ASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL-- 87
Query: 316 LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI 365
T L VL L N +P ++ + HL+ L M N + +P GI
Sbjct: 88 ----TQLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKL-TELPRGI 131
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 100/257 (38%), Gaps = 24/257 (9%)
Query: 106 GINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQ 165
INL ++RF ++Q+L+LT +L+G +P+ + L+ +AN F
Sbjct: 257 SINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSF--- 312
Query: 166 IPDQLISLTKLEIIRLGTSNLTGNI------PAWVGNFSSLQVLLLARNNLHGSIPN--E 217
DQL + L + GN+ + +LQ L L+ +++ S +
Sbjct: 313 --DQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQ 370
Query: 218 LGQLSALGFFTLYENF---ISDVGLT-LPNLKIFAGGVNYFTGSIPVS-LSNASNLQVLD 272
L L L + L N + D P L++ + P S N L+VL+
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLN 430
Query: 273 FAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLAN-----CTSLEVLGL 327
+ L + L+DL LN N I N L+ + + +S +L +
Sbjct: 431 LSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSI 490
Query: 328 AQNGFGGEMPISIANLS 344
Q F G ++ +LS
Sbjct: 491 DQQAFHGLRNVNHLDLS 507
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 89 QLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSH 148
Q+VGS+ I + NL I+ Q FHG L+ + L+L++N L+G LSH
Sbjct: 472 QMVGSLEILILSSCNLLSID--QQAFHG--------LRNVNHLDLSHNSLTGDSMDALSH 521
Query: 149 CTELRSFEASANDFIGQIPDQLI-SLTKLEIIRLG 182
L AS N I IP L+ +L++ II L
Sbjct: 522 LKGLYLNMASNN--IRIIPPHLLPALSQQSIINLS 554
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 54 QIMSSWNDSVHFCNW---VGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNL 104
Q ++WN + W GV+ + SNGRVT L LE G +P +IG LT L
Sbjct: 55 QPGANWNFNKELDXWGAQPGVSLN-SNGRVTGLSLEGFGASGRVPDAIGQLTEL 107
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 66 CNWVGVTCSPSN--GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIG 123
C+ + +T P + +TVL L QL A+ + LT +++ N PE
Sbjct: 21 CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 80
Query: 124 RLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAN 160
+L L+ LNL +N LS + CT L +N
Sbjct: 81 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 117
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 66 CNWVGVTCSPSN--GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIG 123
C+ + +T P + +TVL L QL A+ + LT +++ N PE
Sbjct: 16 CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 75
Query: 124 RLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAN 160
+L L+ LNL +N LS + CT L +N
Sbjct: 76 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 112
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 66 CNWVGVTCSPSN--GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIG 123
C+ + +T P + +TVL L QL A+ + LT +++ N PE
Sbjct: 11 CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 70
Query: 124 RLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAN 160
+L L+ LNL +N LS + CT L +N
Sbjct: 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 72 TCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDL 131
TC+ + + VL L S L GS+ + + ++L NR IP+++ LQ LQ+L
Sbjct: 423 TCAWAES-ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQEL 478
Query: 132 NLTYNYLSG 140
N+ N L
Sbjct: 479 NVASNQLKS 487
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 66 CNWVGVTCSPSN--GRVTVLKLESKQLVGSIPASI-GNLTNLTGINLFQNRFHGQIPEEI 122
CN G+T P+ T L+LES +L S+P + LT LT ++L QN+ +P+ +
Sbjct: 14 CNSKGLTSVPTGIPSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGV 71
Query: 123 -GRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLIS-LTKLEIIR 180
+L KL L L N L T+L+ N + +PD + LT L+ I
Sbjct: 72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIW 130
Query: 181 LGTSNLTGNIP 191
L T+ + P
Sbjct: 131 LHTNPWDCSCP 141
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139
VT L L+ Q +P + N +LT I+L NR + + +L L L+YN L
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPD 168
P LR ND I +P+
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGND-ISVVPE 119
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 28/149 (18%)
Query: 151 ELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNL 210
ELRS + Q PDQ L+ L+ + + L +P F+ L+ L LARN L
Sbjct: 87 ELRSVP------LPQFPDQAFRLSHLQHXTIDAAGLX-ELPDTXQQFAGLETLTLARNPL 139
Query: 211 HGSIPNELGQLSALGFFT---------LYENFISDVG-------LTLPNLKIFAGGVNYF 254
++P + L+ L + L E S + L +L++ G+
Sbjct: 140 R-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-- 196
Query: 255 TGSIPVSLSNASNLQVLDFAENGLTGTIP 283
S+P S++N NL+ L + L+ P
Sbjct: 197 --SLPASIANLQNLKSLKIRNSPLSALGP 223
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 95 PASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL-SGKIPTNLSHCTELR 153
P S LT+L + + + IG+L L+ LN+ +N++ S K+P S+ T L
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 154 SFEASANDFIGQIPDQLISLTKLEIIR 180
+ S N +I Q I++ L+ +R
Sbjct: 157 HVDLSYN-YI-----QTITVNDLQFLR 177
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 95 PASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL-SGKIPTNLSHCTELR 153
P S LT+L + + + IG+L L+ LN+ +N++ S K+P S+ T L
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 154 SFEASANDFIGQIPDQLISLTKLEIIR 180
+ S N +I Q I++ L+ +R
Sbjct: 152 HVDLSYN-YI-----QTITVNDLQFLR 172
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 28/163 (17%)
Query: 176 LEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS 235
++ L S + + + +F+ L+ L LA+N ++ N L+ L L +NF+
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL- 335
Query: 236 DVGLTLPNLKIFAGGVNYFTGSIPVSL-SNASNLQVLDFAENGLTGTIPENFGSLKDLVR 294
GSI + N L+VLD + N + ++F L +L
Sbjct: 336 --------------------GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375
Query: 295 LNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMP 337
L D N+L S G + L TSL+ + L N + P
Sbjct: 376 LALDTNQLKSVPDGIFDRL------TSLQKIWLHTNPWDCSCP 412
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 267 NLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELG-----SREIGDLNFLKFLANCTS 321
NL +LD + N + + L++L L+F N L + G +NFLK L++
Sbjct: 481 NLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSH--- 537
Query: 322 LEVLGLAQNGFGGEMPISI 340
L +L L NG E+P+ +
Sbjct: 538 LHILNLESNGL-DEIPVGV 555
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL 138
++ L++ +L G IP + L ++L N+ E++ R KL L L +N +
Sbjct: 173 KLNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 139 SGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLT 187
+LS LR N+ + ++P L L L+++ L T+N+T
Sbjct: 230 RMIENGSLSFLPTLRELHLD-NNKLSRVPAGLPDLKLLQVVYLHTNNIT 277
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 81/197 (41%), Gaps = 20/197 (10%)
Query: 105 TGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIG 164
+G+ ++R IP G ++ L+L++N ++ +L C L+ ++
Sbjct: 33 SGVCDGRSRSFTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 90
Query: 165 QIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSAL 224
D SL LE + L ++L+ +W G SSL+ L NL G L
Sbjct: 91 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL-----NLMG------NPYQTL 139
Query: 225 GFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPE 284
G +L+ N + L L+I G V F+ + + ++L L+ L +
Sbjct: 140 GVTSLFPNLTN-----LQTLRI--GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 192
Query: 285 NFGSLKDLVRLNFDQNE 301
+ S++D+ L +E
Sbjct: 193 SLKSIRDIHHLTLHLSE 209
>pdb|2GVK|A Chain A, Crystal Structure Of A Dye-Decolorizing Peroxidase (Dyp)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.6 A
Resolution
Length = 317
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 106 GINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTEL-RSFEASANDFIG 164
G N FQN F G IP+++ Q + + YN P + ++ +F A
Sbjct: 1 GXNPFQNSFGGHIPQDVAGKQGENVIFIVYNLTDS--PDTVDKVKDVCANFSAXIRSXRN 58
Query: 165 QIPDQLISLT 174
+ PD S T
Sbjct: 59 RFPDXQFSCT 68
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 81/197 (41%), Gaps = 20/197 (10%)
Query: 105 TGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIG 164
+G+ ++R IP G ++ L+L++N ++ +L C L+ ++
Sbjct: 7 SGVCDGRSRSFTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64
Query: 165 QIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSAL 224
D SL LE + L ++L+ +W G SSL+ L NL G L
Sbjct: 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL-----NLMG------NPYQTL 113
Query: 225 GFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPE 284
G +L+ N + L L+I G V F+ + + ++L L+ L +
Sbjct: 114 GVTSLFPNLTN-----LQTLRI--GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166
Query: 285 NFGSLKDLVRLNFDQNE 301
+ S++D+ L +E
Sbjct: 167 SLKSIRDIHHLTLHLSE 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,480,879
Number of Sequences: 62578
Number of extensions: 497202
Number of successful extensions: 1349
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1069
Number of HSP's gapped (non-prelim): 166
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)