Query 037538
Match_columns 461
No_of_seqs 331 out of 4271
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 13:15:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.5E-52 3.3E-57 457.1 35.1 421 34-459 27-470 (968)
2 PLN00113 leucine-rich repeat r 100.0 1E-45 2.2E-50 403.4 27.4 374 78-459 188-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 1E-36 2.2E-41 288.1 8.8 381 61-450 47-448 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.3E-35 4.9E-40 279.0 9.7 369 78-454 52-429 (873)
5 KOG0444 Cytoskeletal regulator 100.0 6.5E-35 1.4E-39 278.0 -2.3 354 78-449 32-394 (1255)
6 KOG0472 Leucine-rich repeat pr 100.0 9.5E-36 2.1E-40 270.1 -9.4 364 78-454 68-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 2.5E-34 5.5E-39 273.9 -4.7 361 78-454 7-375 (1255)
8 KOG0472 Leucine-rich repeat pr 100.0 3.3E-33 7.1E-38 253.7 -11.8 364 79-460 46-523 (565)
9 KOG0618 Serine/threonine phosp 99.9 5.2E-30 1.1E-34 254.8 -3.1 360 79-454 46-465 (1081)
10 PLN03210 Resistant to P. syrin 99.9 2.4E-24 5.2E-29 236.3 26.6 360 78-452 532-904 (1153)
11 PLN03210 Resistant to P. syrin 99.9 1.8E-23 3.9E-28 229.5 24.6 317 93-428 579-904 (1153)
12 KOG0618 Serine/threonine phosp 99.9 2.3E-27 5E-32 236.1 -5.8 330 104-458 47-423 (1081)
13 PRK15387 E3 ubiquitin-protein 99.9 2E-22 4.3E-27 206.6 15.3 265 126-437 201-465 (788)
14 KOG4237 Extracellular matrix p 99.9 7.5E-25 1.6E-29 199.2 -2.6 361 78-451 67-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 6.6E-22 1.4E-26 202.8 16.5 266 102-414 201-466 (788)
16 PRK15370 E3 ubiquitin-protein 99.8 5.5E-20 1.2E-24 189.9 19.0 339 30-406 57-428 (754)
17 PRK15370 E3 ubiquitin-protein 99.8 1.2E-19 2.7E-24 187.3 13.5 245 151-430 179-428 (754)
18 cd00116 LRR_RI Leucine-rich re 99.8 2.2E-20 4.7E-25 178.7 5.4 106 106-211 2-121 (319)
19 cd00116 LRR_RI Leucine-rich re 99.8 1.7E-20 3.7E-25 179.4 4.1 277 154-453 2-319 (319)
20 KOG4237 Extracellular matrix p 99.8 9.1E-21 2E-25 172.8 -0.7 297 117-453 60-358 (498)
21 KOG0617 Ras suppressor protein 99.7 5E-19 1.1E-23 143.7 -6.0 183 262-457 29-215 (264)
22 KOG0617 Ras suppressor protein 99.7 1.6E-18 3.4E-23 140.9 -4.7 153 78-235 33-186 (264)
23 PLN03150 hypothetical protein; 99.6 1.3E-14 2.7E-19 149.6 13.8 154 30-187 366-528 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 4.2E-14 9E-19 135.3 -4.6 177 266-459 75-251 (722)
25 COG4886 Leucine-rich repeat (L 99.3 1.3E-11 2.8E-16 121.6 9.5 179 265-458 115-294 (394)
26 KOG1909 Ran GTPase-activating 99.3 9.6E-13 2.1E-17 119.2 0.3 90 97-187 25-133 (382)
27 PLN03150 hypothetical protein; 99.2 1.6E-11 3.6E-16 126.6 8.8 113 346-458 419-532 (623)
28 KOG1909 Ran GTPase-activating 99.2 3.7E-12 8E-17 115.5 3.2 108 346-453 186-310 (382)
29 COG4886 Leucine-rich repeat (L 99.2 5.8E-11 1.3E-15 117.0 9.3 176 173-362 115-294 (394)
30 KOG4658 Apoptotic ATPase [Sign 99.1 5.6E-11 1.2E-15 125.5 6.6 128 79-209 524-653 (889)
31 KOG3207 Beta-tubulin folding c 99.1 2.3E-11 4.9E-16 113.4 1.8 209 239-454 118-339 (505)
32 KOG0532 Leucine-rich repeat (L 99.1 3.2E-12 7E-17 122.6 -4.5 167 225-406 78-247 (722)
33 PF14580 LRR_9: Leucine-rich r 99.1 1.9E-10 4.1E-15 97.8 6.0 126 99-229 16-147 (175)
34 KOG1259 Nischarin, modulator o 99.1 3.5E-11 7.6E-16 106.9 1.3 133 316-455 280-413 (490)
35 KOG3207 Beta-tubulin folding c 99.1 3.6E-11 7.7E-16 112.1 1.3 207 218-431 117-340 (505)
36 KOG4658 Apoptotic ATPase [Sign 99.0 2.1E-10 4.7E-15 121.1 4.9 295 99-401 520-827 (889)
37 KOG1259 Nischarin, modulator o 99.0 1.3E-10 2.7E-15 103.5 1.8 82 346-430 330-412 (490)
38 PF14580 LRR_9: Leucine-rich r 99.0 4.7E-10 1E-14 95.4 3.7 109 122-235 15-126 (175)
39 PF13855 LRR_8: Leucine rich r 98.8 1.8E-09 4E-14 75.4 2.9 61 393-453 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.8 1.8E-09 3.9E-14 106.7 0.8 245 148-431 70-319 (414)
41 PF13855 LRR_8: Leucine rich r 98.8 4.6E-09 1E-13 73.4 2.6 59 370-428 2-60 (61)
42 KOG0531 Protein phosphatase 1, 98.8 8.5E-10 1.8E-14 109.0 -1.7 132 99-237 69-201 (414)
43 KOG2120 SCF ubiquitin ligase, 98.6 1.1E-09 2.4E-14 97.4 -4.9 180 243-429 186-375 (419)
44 PF08263 LRRNT_2: Leucine rich 98.6 5.8E-08 1.3E-12 62.1 3.8 40 35-74 2-43 (43)
45 KOG2982 Uncharacterized conser 98.5 2.8E-08 6.1E-13 88.6 0.4 83 126-208 71-156 (418)
46 KOG4579 Leucine-rich repeat (L 98.4 4.1E-08 8.9E-13 77.6 0.3 118 315-436 48-165 (177)
47 COG5238 RNA1 Ran GTPase-activa 98.4 1.6E-07 3.6E-12 82.8 3.4 193 261-454 87-316 (388)
48 KOG1859 Leucine-rich repeat pr 98.4 4.8E-09 1E-13 103.9 -7.1 125 321-453 165-291 (1096)
49 COG5238 RNA1 Ran GTPase-activa 98.4 1.6E-07 3.4E-12 82.9 2.5 188 100-304 28-256 (388)
50 KOG1859 Leucine-rich repeat pr 98.4 4.8E-09 1E-13 103.9 -8.1 127 267-406 165-292 (1096)
51 KOG2982 Uncharacterized conser 98.3 1.7E-07 3.7E-12 83.8 1.9 184 261-449 92-287 (418)
52 KOG2120 SCF ubiquitin ligase, 98.3 4.4E-08 9.5E-13 87.5 -2.8 179 266-452 185-374 (419)
53 KOG4579 Leucine-rich repeat (L 98.2 2.2E-07 4.8E-12 73.6 -1.0 133 321-458 28-163 (177)
54 PRK15386 type III secretion pr 98.0 1.5E-05 3.3E-10 76.4 8.3 136 286-451 48-187 (426)
55 PF12799 LRR_4: Leucine Rich r 98.0 3.2E-06 7E-11 54.1 1.8 36 418-454 2-37 (44)
56 PF12799 LRR_4: Leucine Rich r 97.8 2.1E-05 4.5E-10 50.3 3.0 36 103-139 2-37 (44)
57 PRK15386 type III secretion pr 97.7 0.00014 3.1E-09 69.9 8.7 77 122-210 48-124 (426)
58 KOG4341 F-box protein containi 97.6 1.5E-06 3.3E-11 81.3 -5.5 83 102-184 138-226 (483)
59 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.5E-09 62.5 6.0 83 127-211 43-126 (233)
60 KOG3665 ZYG-1-like serine/thre 97.6 3.9E-05 8.5E-10 79.7 4.0 59 367-427 171-230 (699)
61 KOG3665 ZYG-1-like serine/thre 97.5 6.5E-05 1.4E-09 78.1 2.6 145 174-339 122-269 (699)
62 KOG1644 U2-associated snRNP A' 97.4 0.00043 9.4E-09 59.0 6.5 40 262-301 109-151 (233)
63 KOG2739 Leucine-rich acidic nu 97.1 0.00029 6.4E-09 62.5 2.8 62 148-211 63-129 (260)
64 KOG4341 F-box protein containi 97.0 6.6E-05 1.4E-09 70.6 -2.3 274 174-452 138-437 (483)
65 KOG2123 Uncharacterized conser 97.0 6.3E-05 1.4E-09 67.1 -2.5 98 346-447 20-123 (388)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00041 8.9E-09 61.6 2.0 107 99-207 40-152 (260)
67 PF13306 LRR_5: Leucine rich r 96.9 0.0053 1.1E-07 49.7 8.2 106 97-207 7-112 (129)
68 KOG1947 Leucine rich repeat pr 96.8 0.00058 1.3E-08 69.1 1.9 19 388-406 357-375 (482)
69 PF13306 LRR_5: Leucine rich r 96.7 0.0027 5.8E-08 51.5 4.7 38 285-329 7-44 (129)
70 KOG1947 Leucine rich repeat pr 96.2 0.0017 3.7E-08 65.7 1.1 32 364-395 357-389 (482)
71 KOG4308 LRR-containing protein 96.1 6.3E-05 1.4E-09 74.8 -9.7 87 244-332 89-184 (478)
72 KOG2123 Uncharacterized conser 95.8 0.0021 4.5E-08 57.7 -0.5 97 321-423 20-123 (388)
73 PF00560 LRR_1: Leucine Rich R 95.4 0.0068 1.5E-07 32.2 0.9 18 419-437 2-19 (22)
74 KOG4308 LRR-containing protein 95.3 0.00031 6.8E-09 69.9 -8.3 182 224-407 89-304 (478)
75 PF00560 LRR_1: Leucine Rich R 94.9 0.012 2.6E-07 31.2 0.9 12 371-382 2-13 (22)
76 KOG0473 Leucine-rich repeat pr 94.5 0.00071 1.5E-08 59.0 -7.1 85 77-164 41-125 (326)
77 PF13504 LRR_7: Leucine rich r 93.7 0.038 8.3E-07 27.1 1.1 13 442-454 2-14 (17)
78 KOG0473 Leucine-rich repeat pr 93.3 0.0044 9.4E-08 54.2 -4.5 85 366-453 39-123 (326)
79 smart00369 LRR_TYP Leucine-ric 90.1 0.22 4.8E-06 27.4 1.6 17 441-458 2-18 (26)
80 smart00370 LRR Leucine-rich re 90.1 0.22 4.8E-06 27.4 1.6 17 441-458 2-18 (26)
81 KOG3864 Uncharacterized conser 87.0 0.25 5.3E-06 42.7 0.6 34 369-402 151-185 (221)
82 PF13516 LRR_6: Leucine Rich r 86.6 0.36 7.8E-06 25.9 1.0 15 320-334 2-16 (24)
83 KOG3864 Uncharacterized conser 86.0 0.21 4.6E-06 43.0 -0.2 35 175-209 102-136 (221)
84 KOG4242 Predicted myosin-I-bin 82.9 5.6 0.00012 39.1 7.7 68 150-219 165-235 (553)
85 smart00364 LRR_BAC Leucine-ric 79.3 1.4 3E-05 24.3 1.4 17 442-459 3-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 65.3 6 0.00013 21.8 1.8 14 441-454 2-15 (26)
87 smart00368 LRR_RI Leucine rich 64.8 5.7 0.00012 22.2 1.8 14 441-454 2-15 (28)
88 KOG3763 mRNA export factor TAP 59.4 5.7 0.00012 39.8 1.8 36 265-300 217-254 (585)
89 KOG4242 Predicted myosin-I-bin 46.2 45 0.00097 33.1 5.5 62 320-381 214-280 (553)
90 smart00367 LRR_CC Leucine-rich 45.2 16 0.00034 19.9 1.4 13 440-452 1-13 (26)
91 KOG3763 mRNA export factor TAP 44.0 11 0.00024 37.8 1.2 62 173-234 217-282 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-52 Score=457.07 Aligned_cols=421 Identities=34% Similarity=0.535 Sum_probs=281.0
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCC
Q 037538 34 IEADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNR 113 (461)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~ 113 (461)
.+.|+.||++||+++. +|...+.+|....+||.|.||+|+.. ++|+.|+++++.+.+.++..+..+++|++|++++|+
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~ 104 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence 5689999999999985 77777899998889999999999853 799999999999999999999999999999999999
Q ss_pred CcccCchhcc-CCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCc
Q 037538 114 FHGQIPEEIG-RLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPA 192 (461)
Q Consensus 114 ~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 192 (461)
+.+.+|..+. .+++|++|++++|++++.+|. +.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|.
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 9988887655 788888888888888766664 3466677777777777666666677777777777777766666666
Q ss_pred cCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchh----hccCCCCCcEEEccCccCccccChhhcCCCCC
Q 037538 193 WVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD----VGLTLPNLKIFAGGVNYFTGSIPVSLSNASNL 268 (461)
Q Consensus 193 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~----~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L 268 (461)
.+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.. ....+++|++|++++|.+++.+|..++++++|
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 66666777777777776666666666666666666666665532 12345566666666666666666666666666
Q ss_pred CEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCc------------------hhhhhhcCCCCCCEEEccCC
Q 037538 269 QVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDL------------------NFLKFLANCTSLEVLGLAQN 330 (461)
Q Consensus 269 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------------~~~~~l~~~~~L~~L~L~~n 330 (461)
++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+ ..+..+..+++|+.|++++|
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 666666666665555555566666666666665554110000 22333444445555555555
Q ss_pred cCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCC
Q 037538 331 GFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMP 410 (461)
Q Consensus 331 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 410 (461)
.+++.+|..+..+. +|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|
T Consensus 343 ~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p 421 (968)
T PLN00113 343 KFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421 (968)
T ss_pred CCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC
Confidence 55544554444443 45555555555555555555555555555555555555555555556666666666666666666
Q ss_pred hhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 411 SSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 411 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
..+..++.|+.|++++|.+++.+|..+..+++|+.|++++|++.|.+|.
T Consensus 422 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 422 SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred hhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc
Confidence 6666666666666666666666666556666666666666666666664
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-45 Score=403.44 Aligned_cols=374 Identities=34% Similarity=0.547 Sum_probs=281.6
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.+++.|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++++++|++|++
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 46778888888887777877888888888888888887777777888888888888888777777777777778888888
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchh-
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD- 236 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~- 236 (461)
++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+..
T Consensus 268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred cCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc
Confidence 7777777777777777777777777777777777777777777777777777776677777777777777777666532
Q ss_pred ---hccCCCCCcEEEccCccCccccChhhcCC------------------------CCCCEEEcccccccccCCccCCCC
Q 037538 237 ---VGLTLPNLKIFAGGVNYFTGSIPVSLSNA------------------------SNLQVLDFAENGLTGTIPENFGSL 289 (461)
Q Consensus 237 ---~~~~l~~L~~L~l~~n~~~~~~~~~l~~~------------------------~~L~~L~l~~n~l~~~~~~~~~~l 289 (461)
....+++|+.+++++|.+++.+|..+..+ ++|++|++++|.+++..|..+..+
T Consensus 348 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l 427 (968)
T PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427 (968)
T ss_pred CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC
Confidence 12234555566666555555555555444 445555555555544444445555
Q ss_pred CCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCC
Q 037538 290 KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLV 369 (461)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~ 369 (461)
++|+.|++++|.+.+ ..+..+..+++|+.|++++|++.+.+|..+.. ++|+.|++++|.+++.+|..+..++
T Consensus 428 ~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--~~L~~L~ls~n~l~~~~~~~~~~l~ 499 (968)
T PLN00113 428 PLVYFLDISNNNLQG------RINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLENLDLSRNQFSGAVPRKLGSLS 499 (968)
T ss_pred CCCCEEECcCCcccC------ccChhhccCCCCcEEECcCceeeeecCccccc--ccceEEECcCCccCCccChhhhhhh
Confidence 555555555555544 33344455677777777777777666655432 3788889999999888888889999
Q ss_pred CCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEcc
Q 037538 370 NLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLS 449 (461)
Q Consensus 370 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls 449 (461)
+|+.|++++|++.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|+++|.+|..+.++++|+.++++
T Consensus 500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 579 (968)
T PLN00113 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579 (968)
T ss_pred ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCC
Q 037538 450 SNNLNGTIPK 459 (461)
Q Consensus 450 ~N~l~~~ip~ 459 (461)
+|++.|.+|.
T Consensus 580 ~N~l~~~~p~ 589 (968)
T PLN00113 580 HNHLHGSLPS 589 (968)
T ss_pred CCcceeeCCC
Confidence 9999999985
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1e-36 Score=288.12 Aligned_cols=381 Identities=22% Similarity=0.217 Sum_probs=287.6
Q ss_pred CCCCCcceeeEEecCCC--------------CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCC
Q 037538 61 DSVHFCNWVGVTCSPSN--------------GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQ 126 (461)
Q Consensus 61 ~~~~~c~w~gv~c~~~~--------------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 126 (461)
+.++.|.-.-..|+... ..++.|++++|.+...-+..|.++++|+.+++..|.++ .+|.......
T Consensus 47 pa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sg 125 (873)
T KOG4194|consen 47 PATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESG 125 (873)
T ss_pred CCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccccc
Confidence 44455665556665321 35677888888887666677788888888888888887 7777666666
Q ss_pred CCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECc
Q 037538 127 KLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLA 206 (461)
Q Consensus 127 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (461)
+|+.|+|.+|.++..-.+.+..++.|+.|||+.|.++..--..|..-.++++|+|++|.++..-...|..+.+|..|.++
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 78888888888775555677778888888888888875544566666788888888888886666677788888888888
Q ss_pred cCCCcccCChhhhcCCCCcEEecCCCCchhh----ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccC
Q 037538 207 RNNLHGSIPNELGQLSALGFFTLYENFISDV----GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTI 282 (461)
Q Consensus 207 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 282 (461)
.|+++...+..|.++++|+.|++..|.+..+ +..+++|+.+.+..|.+...-...|..+.++++|+|+.|+++..-
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence 8888855556677788888888888888655 356778888888888887766677788888888888888888777
Q ss_pred CccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCc
Q 037538 283 PENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIP 362 (461)
Q Consensus 283 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 362 (461)
..++.++..|+.|++++|.+....+. .+..+++|++|+|++|+++.--+..+..+. .|++|++++|.+.-.--
T Consensus 286 ~g~lfgLt~L~~L~lS~NaI~rih~d------~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~~l~e 358 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNAIQRIHID------SWSFTQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSIDHLAE 358 (873)
T ss_pred cccccccchhhhhccchhhhheeecc------hhhhcccceeEeccccccccCChhHHHHHH-HhhhhcccccchHHHHh
Confidence 77888888888888888888774443 345578888888888888865566666665 78888888888775555
Q ss_pred hhhhcCCCCCeeecccCcCccccc---hhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCC
Q 037538 363 VGIENLVNLSLLGLEGNNLSGSVP---EVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGN 439 (461)
Q Consensus 363 ~~~~~l~~L~~L~Ls~n~l~~~~~---~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 439 (461)
..|..+++|++|||++|.+...+- ..|.++++|+.|.+-+|++...--.+|..++.|+.|||.+|.|...-|..|..
T Consensus 359 ~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence 567778888888888888865433 34667888888888888887554567888888888888888887777778877
Q ss_pred CCCCCEEEccC
Q 037538 440 CKKLQVLNLSS 450 (461)
Q Consensus 440 l~~L~~L~ls~ 450 (461)
+ .|+.|.+..
T Consensus 439 m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 439 M-ELKELVMNS 448 (873)
T ss_pred c-hhhhhhhcc
Confidence 7 677666543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-35 Score=279.03 Aligned_cols=369 Identities=20% Similarity=0.203 Sum_probs=318.3
Q ss_pred CcEEEEEcCCCCcccccCccccCC--CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEE
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNL--TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSF 155 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 155 (461)
.+.+.+|.+++.+...-...+..+ ..-+.|++++|.+....+..|.++++|+.+++.+|.++ .+|.......+|+.|
T Consensus 52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKL 130 (873)
T ss_pred CCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEE
Confidence 456788999888764333333322 44567999999999888888999999999999999998 899888888889999
Q ss_pred EccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCch
Q 037538 156 EASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 156 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 235 (461)
+|.+|.++..-.+++.-++.|+.|||+.|.++..--..+..-.++++|++++|.++..--..|..+.+|..|.+++|.++
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence 99999999888888999999999999999999544455666678999999999999877788999999999999999996
Q ss_pred hh----ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCch
Q 037538 236 DV----GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLN 311 (461)
Q Consensus 236 ~~----~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 311 (461)
.+ +..++.|+.|++..|++.-.---.|..+++|+.|.+..|.+.......|..+.++++|+|+.|+++..
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v------ 284 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV------ 284 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh------
Confidence 54 45699999999999998754445788999999999999999887778899999999999999999873
Q ss_pred hhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhc
Q 037538 312 FLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGR 391 (461)
Q Consensus 312 ~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 391 (461)
-..++.+++.|+.|++++|.|...-+..+... ++|++|+++.|.++...+..+..+..|+.|.|++|.+...-...|..
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft-qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT-QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhc-ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 34567889999999999999986555555544 49999999999999888889999999999999999999766677889
Q ss_pred CCCCCeeccccccCcccCCh---hhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 392 LNKLEGLELNANKFSGFMPS---SLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 392 ~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
+++|+.|+|++|.++..+.+ .|..+++|+.|++.||++.....+.|.++..|+.||+.+|.|.
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce
Confidence 99999999999999977654 5888999999999999999554569999999999999999986
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=6.5e-35 Score=277.96 Aligned_cols=354 Identities=27% Similarity=0.422 Sum_probs=280.8
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCC-CCCCcCCCCCCCCCEEE
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS-GKIPTNLSHCTELRSFE 156 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~ 156 (461)
.++++|.|...++. .+|..++.+.+|++|.+++|++. .+-..++.++.||.+++..|++. .-+|..+..+..|.+||
T Consensus 32 t~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred hheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 46778888777775 67888888888888888888877 55566778888888888888775 35788888899999999
Q ss_pred ccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCc-cCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCch
Q 037538 157 ASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPA-WVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 157 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 235 (461)
|++|++. ..|..+..-.++-+|+|++|++. .+|. .+.+++.|-.||+++|.+. .+|+.+..+..|+.|.+++|.+.
T Consensus 110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred cchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh
Confidence 9999887 67888888888999999999888 5554 4568888889999999988 77888888999999999998875
Q ss_pred hhc----cCCCCCcEEEccCccCc-cccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCc
Q 037538 236 DVG----LTLPNLKIFAGGVNYFT-GSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDL 310 (461)
Q Consensus 236 ~~~----~~l~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 310 (461)
..- -.+..|+.|++++.+-+ ..+|.++..+.+|..+|++.|.+. .+|+.+..+++|+.|+|++|+++....
T Consensus 187 hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~--- 262 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM--- 262 (1255)
T ss_pred HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec---
Confidence 432 23556777788876543 457888888889999999999887 678888888999999999998886432
Q ss_pred hhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCc-ccCchhhhcCCCCCeeecccCcCccccchhh
Q 037538 311 NFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMH-GNIPVGIENLVNLSLLGLEGNNLSGSVPEVI 389 (461)
Q Consensus 311 ~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l 389 (461)
......+|++|+++.|+++ .+|+.+.+++ .|+.|.+.+|+++ .-+|.+++.+.+|+.+..++|.+. .+|+.+
T Consensus 263 ----~~~~W~~lEtLNlSrNQLt-~LP~avcKL~-kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEgl 335 (1255)
T KOG0444|consen 263 ----TEGEWENLETLNLSRNQLT-VLPDAVCKLT-KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGL 335 (1255)
T ss_pred ----cHHHHhhhhhhccccchhc-cchHHHhhhH-HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhh
Confidence 2345578889999999988 7888888887 8999999888865 347888898999999988888887 888899
Q ss_pred hcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccC-CCCCCCCEEEcc
Q 037538 390 GRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSL-GNCKKLQVLNLS 449 (461)
Q Consensus 390 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~ls 449 (461)
++|..|+.|.|++|++. .+|++|.-++.|+.||+..|+-. +.|..- ..-++++.-++.
T Consensus 336 cRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL-VMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL-VMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred hhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc-cCCCCcchhhhcceeeecc
Confidence 99999999999999887 78999988899999999888755 333322 222455555444
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.98 E-value=9.5e-36 Score=270.13 Aligned_cols=364 Identities=27% Similarity=0.460 Sum_probs=253.8
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
..++.+++.++.+. +.|++++.+..++.++.++|++. ++|+.+..+.+|+.+++++|.+. .+|+.++.+..|..++.
T Consensus 68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 45778888888876 67778888888888888888887 78888888888888888888887 77777888888888887
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCc---
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFI--- 234 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l--- 234 (461)
.+|+++ ..|+.++++.+|..+++.+|++.. +|....+++.|+++|...|.+. .+|..++.+.+|..|++..|.+
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~l 221 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFL 221 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccC
Confidence 777776 566666666666666666666653 3333333566666666665555 5555666666665555555554
Q ss_pred -------------------h----hhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCC
Q 037538 235 -------------------S----DVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKD 291 (461)
Q Consensus 235 -------------------~----~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 291 (461)
. +....++.+..|++..|+++ +.|+.++.+.+|++||+++|.++ ..|..++++ +
T Consensus 222 Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-h 298 (565)
T KOG0472|consen 222 PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-H 298 (565)
T ss_pred CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-e
Confidence 2 33456888999999999997 68899999999999999999998 577889999 9
Q ss_pred CCEEEcccCcCcccC-----------------------CC--------C-----ch----------------------hh
Q 037538 292 LVRLNFDQNELGSRE-----------------------IG--------D-----LN----------------------FL 313 (461)
Q Consensus 292 L~~L~L~~n~l~~~~-----------------------~~--------~-----~~----------------------~~ 313 (461)
|+.|.+.+|.+.... .. + +. .|
T Consensus 299 L~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VP 378 (565)
T KOG0472|consen 299 LKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVP 378 (565)
T ss_pred eeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCC
Confidence 999999999754210 00 0 00 01
Q ss_pred hhh---cCCCCCCEEEccCCcCccccchHHHhcc-----------------------ccccEEEccCCcCcccCchhhhc
Q 037538 314 KFL---ANCTSLEVLGLAQNGFGGEMPISIANLS-----------------------THLRILTMGYNLMHGNIPVGIEN 367 (461)
Q Consensus 314 ~~l---~~~~~L~~L~L~~n~~~~~~~~~~~~~~-----------------------~~L~~L~l~~n~l~~~~p~~~~~ 367 (461)
... +.-.-++.++++.|++. ++|..+..+. ++|..|++++|.+. .+|..++.
T Consensus 379 dEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~ 456 (565)
T KOG0472|consen 379 DEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS 456 (565)
T ss_pred HHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhh
Confidence 100 01112566677777654 4444433332 25555666655554 45555555
Q ss_pred CCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEE
Q 037538 368 LVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLN 447 (461)
Q Consensus 368 l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 447 (461)
+..|+.++++.|+|. ..|.++.....++.+-.++|++...-|..+.++.+|..||+.+|.+. .+|+.++++++|+.|+
T Consensus 457 lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLe 534 (565)
T KOG0472|consen 457 LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLE 534 (565)
T ss_pred hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEE
Confidence 555666666666665 55555555555555555556665444455889999999999999998 8999999999999999
Q ss_pred ccCCCCc
Q 037538 448 LSSNNLN 454 (461)
Q Consensus 448 ls~N~l~ 454 (461)
++||+|.
T Consensus 535 L~gNpfr 541 (565)
T KOG0472|consen 535 LDGNPFR 541 (565)
T ss_pred ecCCccC
Confidence 9999997
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.5e-34 Score=273.94 Aligned_cols=361 Identities=25% Similarity=0.377 Sum_probs=317.9
Q ss_pred CcEEEEEcCCCCcc-cccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEE
Q 037538 78 GRVTVLKLESKQLV-GSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFE 156 (461)
Q Consensus 78 ~~v~~L~l~~~~l~-~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 156 (461)
+-|+.+|+++|.+. +.+|..+..++.++-|.|...++. .+|+.++.+.+|++|.+++|++. .+...++.++.||.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 57899999999998 678999999999999999999887 89999999999999999999988 6777788999999999
Q ss_pred ccCCcCC-CcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCC-hhhhcCCCCcEEecCCCCc
Q 037538 157 ASANDFI-GQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP-NELGQLSALGFFTLYENFI 234 (461)
Q Consensus 157 l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l 234 (461)
+.+|++. .-+|+.+..+..|.+|+|++|++. ..|..+..-+++-.|++++|++. .+| ..+.++..|-.|++++|.+
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence 9999875 358899999999999999999999 78998999999999999999998 455 5578899999999999999
Q ss_pred hhhc---cCCCCCcEEEccCccCccccChhhcCCCCCCEEEccccccc-ccCCccCCCCCCCCEEEcccCcCcccCCCCc
Q 037538 235 SDVG---LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLT-GTIPENFGSLKDLVRLNFDQNELGSREIGDL 310 (461)
Q Consensus 235 ~~~~---~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 310 (461)
..+. ..+..|++|.+++|.+...--..+-.+++|+.|.+++.+-+ ..+|..+..+.+|..++++.|.+.
T Consensus 163 e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp------- 235 (1255)
T KOG0444|consen 163 EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP------- 235 (1255)
T ss_pred hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-------
Confidence 7665 44678999999999875433334455678888889887543 458889999999999999999987
Q ss_pred hhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCc-cccchhh
Q 037538 311 NFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLS-GSVPEVI 389 (461)
Q Consensus 311 ~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~l 389 (461)
..|..+.++++|+.|+|++|.++ ++........ +|+.|+++.|+++ .+|.+++.++.|+.|.+.+|+++ .-+|..+
T Consensus 236 ~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~-~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWE-NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred cchHHHhhhhhhheeccCcCcee-eeeccHHHHh-hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccch
Confidence 56788889999999999999998 5666666665 8999999999998 69999999999999999999886 3589999
Q ss_pred hcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 390 GRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 390 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
+.+.+|+.+..++|.+. .+|+.++.|..|+.|.|+.|++. .+|+.+.-++.|+.||+..|+=.
T Consensus 313 GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 99999999999999987 89999999999999999999988 79999999999999999999843
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=3.3e-33 Score=253.68 Aligned_cols=364 Identities=27% Similarity=0.428 Sum_probs=277.6
Q ss_pred cEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcc
Q 037538 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEAS 158 (461)
Q Consensus 79 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 158 (461)
.+..+++++|.+. .+.+.+.++..+..+++.+|++. +.|.+++++..++.++.++|++. .+|..++.+.+|+.++.+
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 4567889999886 55667899999999999999998 89999999999999999999998 899999999999999999
Q ss_pred CCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhc
Q 037538 159 ANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG 238 (461)
Q Consensus 159 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 238 (461)
+|.+. .+|+.++.+..|+.++..+|+++ ..|..++++.++..+++.+|++... |+....++.|+++++..|.+..+.
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L~tlP 199 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLLETLP 199 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhhhcCC
Confidence 99987 68889999999999999999999 7899999999999999999999954 445555999999999999886654
Q ss_pred cC---CCCCcEEEccCccCcc---------------------ccChhhc-CCCCCCEEEcccccccccCCccCCCCCCCC
Q 037538 239 LT---LPNLKIFAGGVNYFTG---------------------SIPVSLS-NASNLQVLDFAENGLTGTIPENFGSLKDLV 293 (461)
Q Consensus 239 ~~---l~~L~~L~l~~n~~~~---------------------~~~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 293 (461)
.. +.+|..|++..|.+.. .+|.... +++++..||+.+|+++ ..|+.+.-+.+|.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~ 278 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLE 278 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhh
Confidence 32 3444445555555431 2333332 5677777788887776 5677777777788
Q ss_pred EEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCcc---------------------------------------
Q 037538 294 RLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGG--------------------------------------- 334 (461)
Q Consensus 294 ~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~--------------------------------------- 334 (461)
+|++++|.+++ .+..++++ .|+.|-+.+|.+..
T Consensus 279 rLDlSNN~is~-------Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 279 RLDLSNNDISS-------LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred hhcccCCcccc-------CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 88888887775 44456666 67777777764310
Q ss_pred -------------------------ccchHHHhcc--ccccEEEccCCcCc-----------------------ccCchh
Q 037538 335 -------------------------EMPISIANLS--THLRILTMGYNLMH-----------------------GNIPVG 364 (461)
Q Consensus 335 -------------------------~~~~~~~~~~--~~L~~L~l~~n~l~-----------------------~~~p~~ 364 (461)
.+|...+... .-....+++.|++. +.+|..
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~ 430 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLE 430 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHH
Confidence 0111111000 01334455555442 123445
Q ss_pred hhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCC
Q 037538 365 IENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQ 444 (461)
Q Consensus 365 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 444 (461)
++.+++|+.|+|++|.+. .+|..++.+..|+.|+++.|+|. ++|+.+.....++.+-.++|++....|..+.++.+|.
T Consensus 431 l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred HHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 566788888888887776 77888888888888888888887 7888888888888888888888866666799999999
Q ss_pred EEEccCCCCcccCCCC
Q 037538 445 VLNLSSNNLNGTIPKE 460 (461)
Q Consensus 445 ~L~ls~N~l~~~ip~~ 460 (461)
+||+.+|.+. +||+.
T Consensus 509 tLDL~nNdlq-~IPp~ 523 (565)
T KOG0472|consen 509 TLDLQNNDLQ-QIPPI 523 (565)
T ss_pred eeccCCCchh-hCChh
Confidence 9999999996 78764
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=5.2e-30 Score=254.84 Aligned_cols=360 Identities=28% Similarity=0.368 Sum_probs=227.3
Q ss_pred cEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcc
Q 037538 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEAS 158 (461)
Q Consensus 79 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 158 (461)
++..|++++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+...+.+|++++|.+|.+. .+|..+..+.+|++|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 4889999999875 88999999999999999999998 78888999999999999999887 899999999999999999
Q ss_pred CCcCCCcCchhhcCCCCCc-------------------EEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhh
Q 037538 159 ANDFIGQIPDQLISLTKLE-------------------IIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELG 219 (461)
Q Consensus 159 ~n~~~~~~~~~l~~l~~L~-------------------~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 219 (461)
+|.+. .+|..+..+..++ .+++..|.+.+.++..+.+++. .+++.+|.+. -..+.
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls 196 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLS 196 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhh
Confidence 99886 5665555444444 4444445555555555555444 5788887775 23456
Q ss_pred cCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEccc
Q 037538 220 QLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQ 299 (461)
Q Consensus 220 ~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 299 (461)
.+++|+.+....|.+..+...-++++.+..+.|.++...+. .-..+|++++++.|.+++ +|+|++.+.+|+.++...
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANH 273 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccc
Confidence 66777777777777765555555555555555555422111 122455556666555553 335555555555555555
Q ss_pred CcCcccCCCCc----------------hhhhhhcCCCCCCEEEccCCcCccccchHHHhcc-------------------
Q 037538 300 NELGSREIGDL----------------NFLKFLANCTSLEVLGLAQNGFGGEMPISIANLS------------------- 344 (461)
Q Consensus 300 n~l~~~~~~~~----------------~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~------------------- 344 (461)
|++...+..-+ .++......+.|++|+|..|++. .+|..+....
T Consensus 274 N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~ 352 (1081)
T KOG0618|consen 274 NRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPS 352 (1081)
T ss_pred hhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccccccc
Confidence 55533211000 12233344566666666666654 3332221110
Q ss_pred ------ccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCcc
Q 037538 345 ------THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTV 418 (461)
Q Consensus 345 ------~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 418 (461)
+.|+.|++.+|.++...-..+.+++.|+.|+|++|++.......+.+++.|+.|+|++|+++ .+|+++.+++.
T Consensus 353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGR 431 (1081)
T ss_pred ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhh
Confidence 23555666666666555555666666666666666666332334556666666666666666 55666666666
Q ss_pred CCeeecccccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 419 LSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 419 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
|++|...+|++. ..| .+.+++.|+.+|+|.|+++
T Consensus 432 L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 432 LHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 666666666655 444 4555666666666666554
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=2.4e-24 Score=236.35 Aligned_cols=360 Identities=21% Similarity=0.219 Sum_probs=280.3
Q ss_pred CcEEEEEcCCCCccc--ccCccccCCCCCCEEecCCCC------CcccCchhccCC-CCCCEEeCCCCCCCCCCCcCCCC
Q 037538 78 GRVTVLKLESKQLVG--SIPASIGNLTNLTGINLFQNR------FHGQIPEEIGRL-QKLQDLNLTYNYLSGKIPTNLSH 148 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~--~~~~~l~~l~~L~~L~L~~n~------~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~ 148 (461)
.+|+.+.+....+.. ..+.+|..+++|+.|.+..+. +...+|..+..+ .+|+.|.+.++.+. .+|..+ .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 456666555443321 234568889999999997653 233467767665 47999999999887 788877 5
Q ss_pred CCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEe
Q 037538 149 CTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFT 228 (461)
Q Consensus 149 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 228 (461)
..+|+.|++.++++. .++..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 789999999999876 5788888999999999998875556764 78899999999999987778999999999999999
Q ss_pred cCCC-Cchhhcc--CCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccc
Q 037538 229 LYEN-FISDVGL--TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSR 305 (461)
Q Consensus 229 l~~n-~l~~~~~--~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 305 (461)
+++| .+..+.. .+++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|+.|.+.++.....
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhc
Confidence 9986 3444332 5788999999999876666643 468999999999886 455544 578888888877543211
Q ss_pred CCCCch-hhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccc
Q 037538 306 EIGDLN-FLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGS 384 (461)
Q Consensus 306 ~~~~~~-~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 384 (461)
...... .+......++|+.|++++|...+.+|..+..++ +|+.|++++|...+.+|..+ .+++|+.|++++|.....
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~-~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH-KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCC-CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence 000000 011223457899999999988888999998887 99999999987666788765 789999999999877666
Q ss_pred cchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCC
Q 037538 385 VPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNN 452 (461)
Q Consensus 385 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~ 452 (461)
+|.. ..+|+.|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 841 ~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 841 FPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 6653 368999999999998 789999999999999999966555788888999999999999996
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.8e-23 Score=229.53 Aligned_cols=317 Identities=20% Similarity=0.190 Sum_probs=233.1
Q ss_pred ccCccccCC-CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhc
Q 037538 93 SIPASIGNL-TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLI 171 (461)
Q Consensus 93 ~~~~~l~~l-~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 171 (461)
.+|..+..+ .+|+.|.+.++.+. .+|..| .+.+|++|++++|.+. .++..+..+++|+.++++++.....+|. +.
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls 654 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LS 654 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cc
Confidence 455556655 45888999888776 677766 5688999999988887 6777888889999999988766556664 77
Q ss_pred CCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCc-hhhccCCCCCcEEEcc
Q 037538 172 SLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFI-SDVGLTLPNLKIFAGG 250 (461)
Q Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~l~~L~~L~l~ 250 (461)
.+++|++|++++|.....+|..+.++++|+.|++++|.....+|..+ .+++|+.|++++|.. ..+.....+|+.|+++
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~ 733 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLD 733 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecC
Confidence 88899999998887666788888888999999999887666777655 688888998888743 3333445678888888
Q ss_pred CccCccccChhhcCCCCCCEEEccccccc-------ccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCC
Q 037538 251 VNYFTGSIPVSLSNASNLQVLDFAENGLT-------GTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLE 323 (461)
Q Consensus 251 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~ 323 (461)
+|.+. .+|..+ .+++|++|++.++... ...+......++|+.|++++|.... .+|..+.++++|+
T Consensus 734 ~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~------~lP~si~~L~~L~ 805 (1153)
T PLN03210 734 ETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV------ELPSSIQNLHKLE 805 (1153)
T ss_pred CCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc------ccChhhhCCCCCC
Confidence 88875 456544 5677888877764321 1111222345678888888886554 5667788888888
Q ss_pred EEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccc
Q 037538 324 VLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNAN 403 (461)
Q Consensus 324 ~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n 403 (461)
.|++++|...+.+|..+ .++ +|+.|++++|.....+|.. .++|+.|+|++|.+. .+|.++..+++|+.|++++|
T Consensus 806 ~L~Ls~C~~L~~LP~~~-~L~-sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 806 HLEIENCINLETLPTGI-NLE-SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred EEECCCCCCcCeeCCCC-Ccc-ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 88888876555666654 333 7888888888655555542 367888888888887 67888888888888888886
Q ss_pred cCcccCChhhhcCccCCeeeccccc
Q 037538 404 KFSGFMPSSLGNLTVLSRLLMEENR 428 (461)
Q Consensus 404 ~l~~~~~~~~~~l~~L~~L~l~~n~ 428 (461)
+-...+|..+..+++|+.+++++|.
T Consensus 880 ~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 880 NNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCcCccCcccccccCCCeeecCCCc
Confidence 5544677777788888888888875
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=2.3e-27 Score=236.13 Aligned_cols=330 Identities=28% Similarity=0.404 Sum_probs=160.0
Q ss_pred CCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccC
Q 037538 104 LTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGT 183 (461)
Q Consensus 104 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 183 (461)
|+.|++++|.+. ..|..+..+..|+.|+++.|.+. ..|.+..++.+|+++.|..|.+. ..|..+..+.+|++|++++
T Consensus 47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccch
Confidence 455555544443 44444444445555555554444 44444444455555555444433 3444444455555555555
Q ss_pred CCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchh-hccCCCCCc-EEEccCccCccccChh
Q 037538 184 SNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD-VGLTLPNLK-IFAGGVNYFTGSIPVS 261 (461)
Q Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~l~~L~-~L~l~~n~~~~~~~~~ 261 (461)
|.+. .+|..+..+..+..+..++|.... .+++.. ++.+++..|.+.. +......++ .+++.+|.+. . ..
T Consensus 124 N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~----~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~--~d 194 (1081)
T KOG0618|consen 124 NHFG-PIPLVIEVLTAEEELAASNNEKIQ----RLGQTS-IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-V--LD 194 (1081)
T ss_pred hccC-CCchhHHhhhHHHHHhhhcchhhh----hhcccc-chhhhhhhhhcccchhcchhhhheeeecccchhh-h--hh
Confidence 4444 344444444444444444441111 111111 3333333333321 111122233 3666666554 1 12
Q ss_pred hcCCCCCCEEEcccccccccCC------------------ccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCC
Q 037538 262 LSNASNLQVLDFAENGLTGTIP------------------ENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLE 323 (461)
Q Consensus 262 l~~~~~L~~L~l~~n~l~~~~~------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~ 323 (461)
+..+.+|+.+....|++....- ..-....+|++++++.|++.. ++.++..+.+|+
T Consensus 195 ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-------lp~wi~~~~nle 267 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-------LPEWIGACANLE 267 (1081)
T ss_pred hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc-------chHHHHhcccce
Confidence 3344444444444444321100 001122456666666666663 457778888888
Q ss_pred EEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhh-------------
Q 037538 324 VLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIG------------- 390 (461)
Q Consensus 324 ~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~------------- 390 (461)
.++..+|+++ .+|..+.... +|+.+.+..|.+. .+|......+.|++|+|..|++. ..|+.+-
T Consensus 268 ~l~~n~N~l~-~lp~ri~~~~-~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 268 ALNANHNRLV-ALPLRISRIT-SLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVS 343 (1081)
T ss_pred EecccchhHH-hhHHHHhhhh-hHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhh
Confidence 8888888875 6666655554 5555555555555 34444555666666666666654 2232110
Q ss_pred -------------cCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCc-cCCCCCCCCEEEccCCCCccc
Q 037538 391 -------------RLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPP-SLGNCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 391 -------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~ls~N~l~~~ 456 (461)
..+.|+.|++.+|.+++.....+.+.+.|+.|+|++|++. .+|. .+.++..|+.|++|||++. +
T Consensus 344 ~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~ 421 (1081)
T KOG0618|consen 344 SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-T 421 (1081)
T ss_pred hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-h
Confidence 1233455555555555544445555555555555555554 3332 4455555555555555554 4
Q ss_pred CC
Q 037538 457 IP 458 (461)
Q Consensus 457 ip 458 (461)
+|
T Consensus 422 Lp 423 (1081)
T KOG0618|consen 422 LP 423 (1081)
T ss_pred hh
Confidence 44
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=2e-22 Score=206.62 Aligned_cols=265 Identities=23% Similarity=0.286 Sum_probs=179.3
Q ss_pred CCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEEC
Q 037538 126 QKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLL 205 (461)
Q Consensus 126 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (461)
..-..|+++.+.++ .+|..+. ++|+.|++++|+++. +|. ..++|++|++++|+++ .+|.. .++|++|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 45668888888887 6777665 478888888888773 554 2578888888888887 45542 357888888
Q ss_pred ccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCcc
Q 037538 206 ARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN 285 (461)
Q Consensus 206 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 285 (461)
++|.+. .+|.. ..+|+.|++++|.+..+....++|+.|++++|.+++ +|.. ..+|+.|++++|.+++ +|.
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~- 339 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT- 339 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccccccccccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc-
Confidence 888877 44432 246777888888887776666778888888887765 3331 2456777777777764 342
Q ss_pred CCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhh
Q 037538 286 FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI 365 (461)
Q Consensus 286 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 365 (461)
...+|+.|++++|+++..+. ..++|+.|++++|.++ .+|.. +.+|+.|++++|.+++ +|..
T Consensus 340 --lp~~Lq~LdLS~N~Ls~LP~----------lp~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-LP~l- 400 (788)
T PRK15387 340 --LPSGLQELSVSDNQLASLPT----------LPSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LPVL- 400 (788)
T ss_pred --cccccceEecCCCccCCCCC----------CCcccceehhhccccc-cCccc----ccccceEEecCCcccC-CCCc-
Confidence 12467778888777765321 1245677777777776 35532 2367777777777764 4432
Q ss_pred hcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccC
Q 037538 366 ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSL 437 (461)
Q Consensus 366 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 437 (461)
.++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|+.+.+++.|+.|++++|++++..|..+
T Consensus 401 --~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 --PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred --ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 256777777777776 45543 245677777777776 577777777777777777777777666654
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=7.5e-25 Score=199.18 Aligned_cols=361 Identities=19% Similarity=0.218 Sum_probs=225.3
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCC-CCCCCCCCcCCCCCCCCCEEE
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTY-NYLSGKIPTNLSHCTELRSFE 156 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~ 156 (461)
...+.|+|..|+|+...+.+|..+++||+|||++|.|+..-|++|..+++|..|-+.+ |+|+......|+++..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 5789999999999977788999999999999999999988999999999998887666 888844445788999999999
Q ss_pred ccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCc------------ccCChhhhcCCCC
Q 037538 157 ASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLH------------GSIPNELGQLSAL 224 (461)
Q Consensus 157 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~------------~~~~~~l~~l~~L 224 (461)
+.-|++.-...+.|..+++|..|.+..|.+...--..+..+..++++.+..|.+. ...|..++...-.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 9999998777888999999999999999988433347888889999999988742 1111122211111
Q ss_pred cEEecCCCCchhhcc--CCCCCcEE---EccCccCccccC-hhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcc
Q 037538 225 GFFTLYENFISDVGL--TLPNLKIF---AGGVNYFTGSIP-VSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFD 298 (461)
Q Consensus 225 ~~L~l~~n~l~~~~~--~l~~L~~L---~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 298 (461)
.-..+.++.+..+.. ....++.+ ..+.+...+..| ..|.++++|++|++++|.+++.-+.+|.+..+++.|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 111111111100000 00001111 011121222222 235555666666666666665555566666666666666
Q ss_pred cCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCccc-----Cchhh--------
Q 037538 299 QNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGN-----IPVGI-------- 365 (461)
Q Consensus 299 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~p~~~-------- 365 (461)
.|++.. .-...|.++..|++|+|++|+++...|..|..+. .|.+|.+-.|++.-. +.+|+
T Consensus 307 ~N~l~~------v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~-~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~ 379 (498)
T KOG4237|consen 307 RNKLEF------VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF-SLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGN 379 (498)
T ss_pred cchHHH------HHHHhhhccccceeeeecCCeeEEEecccccccc-eeeeeehccCcccCccchHHHHHHHhhCCCCCC
Confidence 665554 2234455556666666666666555555554444 555555555543100 00000
Q ss_pred ---hcCCCCCeeecccCcCcc------------------------------------ccchhhhcCCCCCeeccccccCc
Q 037538 366 ---ENLVNLSLLGLEGNNLSG------------------------------------SVPEVIGRLNKLEGLELNANKFS 406 (461)
Q Consensus 366 ---~~l~~L~~L~Ls~n~l~~------------------------------------~~~~~l~~~~~L~~L~L~~n~l~ 406 (461)
+....++.+++++..+.. .+|..+. ..-+.+++.+|.++
T Consensus 380 ~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~ 457 (498)
T KOG4237|consen 380 PRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAIT 457 (498)
T ss_pred CCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhc
Confidence 112234555555543321 1222111 23567888888888
Q ss_pred ccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCC
Q 037538 407 GFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSN 451 (461)
Q Consensus 407 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N 451 (461)
.+|.. .+++| .+|+++|+++-.--..|.++++|.+|-+++|
T Consensus 458 -~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 458 -SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred -ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 67766 55777 8899999988555567888888888888876
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=6.6e-22 Score=202.82 Aligned_cols=266 Identities=23% Similarity=0.279 Sum_probs=168.7
Q ss_pred CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEc
Q 037538 102 TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRL 181 (461)
Q Consensus 102 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 181 (461)
..-..|+++++.++ .+|..+. ++|+.|++++|+++ .+|.. +++|++|++++|+++ .+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 34556777777776 5666554 36777777777776 45542 467777777777776 34432 356777777
Q ss_pred cCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChh
Q 037538 182 GTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVS 261 (461)
Q Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~ 261 (461)
++|.+. .+|.. .++|+.|++++|+++ .+|.. .++|+.|++++|.+..+......|+.|++++|.+++ +|..
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~-LP~l 340 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS-LPTL 340 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccCCCCcccccccccccCcccc-cccc
Confidence 777766 34432 245677777777776 34432 356777777777776655444567777777777763 4431
Q ss_pred hcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHH
Q 037538 262 LSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIA 341 (461)
Q Consensus 262 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~ 341 (461)
..+|++|++++|.+++ +|.. .++|+.|++++|++...+ . ..++|+.|++++|.++ .+|..
T Consensus 341 ---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP-------~---l~~~L~~LdLs~N~Lt-~LP~l-- 400 (788)
T PRK15387 341 ---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLP-------A---LPSGLKELIVSGNRLT-SLPVL-- 400 (788)
T ss_pred ---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCc-------c---cccccceEEecCCccc-CCCCc--
Confidence 2467777777777764 3432 346677777777776422 1 1245777777777776 34432
Q ss_pred hccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhh
Q 037538 342 NLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLG 414 (461)
Q Consensus 342 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 414 (461)
+++|+.|++++|.+++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+.
T Consensus 401 --~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 401 --PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred --ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 2367777777777764 5532 245667777777776 6677777777777777777777776666553
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=5.5e-20 Score=189.86 Aligned_cols=339 Identities=21% Similarity=0.298 Sum_probs=194.2
Q ss_pred cccCcHHHHHHHHHHHhcCCCCCC--CCCCCCCCCCCCcceee----------------EEecCCCCcEEEEEcCCCCcc
Q 037538 30 ESATIEADKLALLDFKNHLTQDPL--QIMSSWNDSVHFCNWVG----------------VTCSPSNGRVTVLKLESKQLV 91 (461)
Q Consensus 30 ~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~w~~~~~~c~w~g----------------v~c~~~~~~v~~L~l~~~~l~ 91 (461)
.....+.+...+++..+.+.-.+. .....|..+.+.|.-.. |.|.. ..|+.+.+.+....
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~l~~~g~~~~ 134 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTYTRVTESEQA 134 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC--Cccccccccccccc
Confidence 445567788888888888752322 22345888888885433 44532 56666666553221
Q ss_pred ccc--CccccCCCCCCEEecCCCCCcccC---chhc-----cCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCc
Q 037538 92 GSI--PASIGNLTNLTGINLFQNRFHGQI---PEEI-----GRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAND 161 (461)
Q Consensus 92 ~~~--~~~l~~l~~L~~L~L~~n~~~~~~---~~~l-----~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 161 (461)
... +....++...-. +-..+...+.. ...+ +...+...|++++++++ .+|..+. ++|+.|++++|+
T Consensus 135 ~~~~~~~~~~~~~~~w~-~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~ 210 (754)
T PRK15370 135 SSASGSKDAVNYELIWS-EWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNNE 210 (754)
T ss_pred ccCCCCCChhhHHHHHH-HHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCC
Confidence 110 000000000000 00000000000 0000 11134456666666655 4454432 356666666666
Q ss_pred CCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCC
Q 037538 162 FIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTL 241 (461)
Q Consensus 162 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l 241 (461)
++ .+|..+. .+|++|++++|+++ .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|.+..+...+
T Consensus 211 Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l 281 (754)
T PRK15370 211 LK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENL 281 (754)
T ss_pred CC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCcccccc
Confidence 55 3444433 35666666666665 3444332 35666666666665 4554443 35666666666665544333
Q ss_pred -CCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCC
Q 037538 242 -PNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCT 320 (461)
Q Consensus 242 -~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~ 320 (461)
++|+.|++++|++++ +|..+. ++|++|++++|.++. +|..+ .++|+.|++++|.++..+ ..+ .+
T Consensus 282 ~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~LP-------~~l--~~ 346 (754)
T PRK15370 282 PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTSLP-------ASL--PP 346 (754)
T ss_pred CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCccccCC-------hhh--cC
Confidence 367777777777764 443332 467888888888874 44433 267888888888877532 222 26
Q ss_pred CCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhh----hcCCCCC
Q 037538 321 SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVI----GRLNKLE 396 (461)
Q Consensus 321 ~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l----~~~~~L~ 396 (461)
+|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|++++|++. .+|..+ ..++.+.
T Consensus 347 sL~~L~Ls~N~L~-~LP~~lp---~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETLP---PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT 418 (754)
T ss_pred cccEEECCCCCCC-cCChhhc---CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc
Confidence 8888899888887 5665442 48889999999888 4666554 36888899999887 555543 3457788
Q ss_pred eeccccccCc
Q 037538 397 GLELNANKFS 406 (461)
Q Consensus 397 ~L~L~~n~l~ 406 (461)
.+++.+|.++
T Consensus 419 ~L~L~~Npls 428 (754)
T PRK15370 419 RIIVEYNPFS 428 (754)
T ss_pred EEEeeCCCcc
Confidence 8999999887
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1.2e-19 Score=187.27 Aligned_cols=245 Identities=22% Similarity=0.351 Sum_probs=150.4
Q ss_pred CCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecC
Q 037538 151 ELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLY 230 (461)
Q Consensus 151 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 230 (461)
+...|+++++.++ .+|..+. +.|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. ..|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 4566777776665 3555443 46777777777776 4555443 46777777777776 4555443 357777777
Q ss_pred CCCchhhccCC-CCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCC
Q 037538 231 ENFISDVGLTL-PNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGD 309 (461)
Q Consensus 231 ~n~l~~~~~~l-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 309 (461)
+|.+..+...+ .+|+.|++++|.++ .+|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|.++..+.
T Consensus 250 ~N~L~~LP~~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~-- 321 (754)
T PRK15370 250 INRITELPERLPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPE-- 321 (754)
T ss_pred CCccCcCChhHhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCc--
Confidence 77776554322 35777777777776 3555443 467777777777764 343332 357777777777664221
Q ss_pred chhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhh
Q 037538 310 LNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVI 389 (461)
Q Consensus 310 ~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l 389 (461)
.+ .++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+
T Consensus 322 -----~l--~~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l 386 (754)
T PRK15370 322 -----TL--PPGLKTLEAGENALT-SLPASLP---PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENL 386 (754)
T ss_pred -----cc--cccceeccccCCccc-cCChhhc---CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhH
Confidence 11 256777777777776 3554432 36777777777776 3555442 56777777777776 455554
Q ss_pred hcCCCCCeeccccccCcccCChhh----hcCccCCeeeccccccc
Q 037538 390 GRLNKLEGLELNANKFSGFMPSSL----GNLTVLSRLLMEENRFE 430 (461)
Q Consensus 390 ~~~~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~ 430 (461)
. .+|+.|++++|+++ .+|+.+ ..++.+..+++.+|+++
T Consensus 387 ~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 387 P--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred H--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 3 35777777777776 445433 33466677777777765
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=2.2e-20 Score=178.69 Aligned_cols=106 Identities=22% Similarity=0.165 Sum_probs=55.7
Q ss_pred EEecCCCCCcc-cCchhccCCCCCCEEeCCCCCCCC----CCCcCCCCCCCCCEEEccCCcCCC------cCchhhcCCC
Q 037538 106 GINLFQNRFHG-QIPEEIGRLQKLQDLNLTYNYLSG----KIPTNLSHCTELRSFEASANDFIG------QIPDQLISLT 174 (461)
Q Consensus 106 ~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~n~~~~------~~~~~l~~l~ 174 (461)
.|+|..+.+++ .....+..+..|++|+++++.+++ .++..+...+.++.++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 35666666652 344455566667777777777642 234445556667777776665541 1223344455
Q ss_pred CCcEEEccCCCCcccCCccCCCCCC---CCEEECccCCCc
Q 037538 175 KLEIIRLGTSNLTGNIPAWVGNFSS---LQVLLLARNNLH 211 (461)
Q Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~l~~n~~~ 211 (461)
+|+.|++++|.+.+..+..+..+.+ |++|++++|.+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 5555555555554333332222222 555555555444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=1.7e-20 Score=179.40 Aligned_cols=277 Identities=22% Similarity=0.251 Sum_probs=178.4
Q ss_pred EEEccCCcCC-CcCchhhcCCCCCcEEEccCCCCccc----CCccCCCCCCCCEEECccCCCcc------cCChhhhcCC
Q 037538 154 SFEASANDFI-GQIPDQLISLTKLEIIRLGTSNLTGN----IPAWVGNFSSLQVLLLARNNLHG------SIPNELGQLS 222 (461)
Q Consensus 154 ~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~------~~~~~l~~l~ 222 (461)
.|+|..+.+. ......+..+.+|+.++++++.++.. ++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4667777666 34555567778899999998887532 44456667778888888877752 1223344444
Q ss_pred CCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCC---CCCEEEccccccccc----CCccCCCC-CCCCE
Q 037538 223 ALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNAS---NLQVLDFAENGLTGT----IPENFGSL-KDLVR 294 (461)
Q Consensus 223 ~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~---~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~ 294 (461)
+|+.|+++ +|.+.+..+..+..+. +|++|++++|.+++. +...+..+ ++|+.
T Consensus 82 ~L~~L~l~--------------------~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~ 141 (319)
T cd00116 82 GLQELDLS--------------------DNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141 (319)
T ss_pred ceeEEEcc--------------------CCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence 55555554 4444433333333333 377788877776632 22334555 77888
Q ss_pred EEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCcccc----chHHHhccccccEEEccCCcCccc----Cchhhh
Q 037538 295 LNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEM----PISIANLSTHLRILTMGYNLMHGN----IPVGIE 366 (461)
Q Consensus 295 L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~p~~~~ 366 (461)
|++++|.+++.... .+...+..+++|++|++++|.+++.. +..+...+ +|+.|++++|.+.+. +...+.
T Consensus 142 L~L~~n~l~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~~~ 218 (319)
T cd00116 142 LVLGRNRLEGASCE--ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC-NLEVLDLNNNGLTDEGASALAETLA 218 (319)
T ss_pred EEcCCCcCCchHHH--HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC-CCCEEeccCCccChHHHHHHHHHhc
Confidence 88888877742211 34455667778888888888877432 22333333 788888888887643 334456
Q ss_pred cCCCCCeeecccCcCccccchhhhc-----CCCCCeeccccccCcc----cCChhhhcCccCCeeeccccccccc----C
Q 037538 367 NLVNLSLLGLEGNNLSGSVPEVIGR-----LNKLEGLELNANKFSG----FMPSSLGNLTVLSRLLMEENRFEGS----I 433 (461)
Q Consensus 367 ~l~~L~~L~Ls~n~l~~~~~~~l~~-----~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~ 433 (461)
.+++|++|++++|.+++.....+.. .+.|+.|++++|.+++ .+...+..+++|+.+++++|.++.. +
T Consensus 219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~ 298 (319)
T cd00116 219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL 298 (319)
T ss_pred ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence 6788999999998887633333322 3789999999998862 3345566678899999999998854 4
Q ss_pred CccCCCC-CCCCEEEccCCCC
Q 037538 434 PPSLGNC-KKLQVLNLSSNNL 453 (461)
Q Consensus 434 p~~l~~l-~~L~~L~ls~N~l 453 (461)
.+.+... +.|+.+++.+|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 299 AESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhhcCCchhhcccCCCCC
Confidence 4444444 6888999988875
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=9.1e-21 Score=172.77 Aligned_cols=297 Identities=21% Similarity=0.204 Sum_probs=189.0
Q ss_pred cCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccC-CCCcccCCccCC
Q 037538 117 QIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGT-SNLTGNIPAWVG 195 (461)
Q Consensus 117 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~ 195 (461)
++|..+- +.-..++|..|+|+...|.+|+.+++||.|||++|.++..-|++|.+++.|..|-+.+ |++++.--..|+
T Consensus 60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 4554332 2556888999999966667899999999999999999999999999999987777666 888855556788
Q ss_pred CCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEccc
Q 037538 196 NFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAE 275 (461)
Q Consensus 196 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 275 (461)
++.+|+.|.+.-|++.......+..++++..|.+..|.+..+.. .++..+..++.+.+..
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~--------------------~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK--------------------GTFQGLAAIKTLHLAQ 197 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc--------------------ccccchhccchHhhhc
Confidence 89999999999999887777788888888777777776655443 2455566777777776
Q ss_pred ccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCC
Q 037538 276 NGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYN 355 (461)
Q Consensus 276 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n 355 (461)
|.+-. ..+++.+....-. .+..++......-..+.+.++...-+..+.....++..--.+.+
T Consensus 198 np~ic-----dCnL~wla~~~a~-------------~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d 259 (498)
T KOG4237|consen 198 NPFIC-----DCNLPWLADDLAM-------------NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED 259 (498)
T ss_pred Ccccc-----ccccchhhhHHhh-------------chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc
Confidence 65421 1222222211111 11111122222222233333321212222111001111111122
Q ss_pred cCcccCc-hhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCC
Q 037538 356 LMHGNIP-VGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIP 434 (461)
Q Consensus 356 ~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 434 (461)
..-+..| ..|..+++|++|+|++|.+++.-+.+|.+...++.|.|..|++...-...|.+++.|+.|+|++|+|+...|
T Consensus 260 ~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 260 FPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred CcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence 2222223 246677777777777777777777777777777777777777765555567777777777777777777777
Q ss_pred ccCCCCCCCCEEEccCCCC
Q 037538 435 PSLGNCKKLQVLNLSSNNL 453 (461)
Q Consensus 435 ~~l~~l~~L~~L~ls~N~l 453 (461)
..|..+.+|.+|++-+|++
T Consensus 340 ~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 340 GAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ccccccceeeeeehccCcc
Confidence 7777777777777777766
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=5e-19 Score=143.72 Aligned_cols=183 Identities=28% Similarity=0.488 Sum_probs=143.4
Q ss_pred hcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHH
Q 037538 262 LSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIA 341 (461)
Q Consensus 262 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~ 341 (461)
+..+++++.|.+++|.++ .+|+.+..+.+|+.|++++|+++ +.|..++.+++|+.|++.-|++. .+|..++
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-------~lp~~issl~klr~lnvgmnrl~-~lprgfg 99 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-------ELPTSISSLPKLRILNVGMNRLN-ILPRGFG 99 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-------hcChhhhhchhhhheecchhhhh-cCccccC
Confidence 445677778888888887 55667778888888888888887 45666777888888888888776 6777777
Q ss_pred hccccccEEEccCCcCcc-cCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCC
Q 037538 342 NLSTHLRILTMGYNLMHG-NIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLS 420 (461)
Q Consensus 342 ~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 420 (461)
.++ .|+.|+++.|.+.. .+|..|..+..|+.|+|++|.|. .+|..++++++|+.|.+.+|.+. .+|..++.+.+|+
T Consensus 100 s~p-~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lr 176 (264)
T KOG0617|consen 100 SFP-ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLR 176 (264)
T ss_pred CCc-hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHH
Confidence 776 78888888887753 57888888888999999999998 78888899999999999999887 7888899999999
Q ss_pred eeecccccccccCCccCCCCC---CCCEEEccCCCCcccC
Q 037538 421 RLLMEENRFEGSIPPSLGNCK---KLQVLNLSSNNLNGTI 457 (461)
Q Consensus 421 ~L~l~~n~l~~~~p~~l~~l~---~L~~L~ls~N~l~~~i 457 (461)
+|.+++|+++ .+|..++++. +=+.+.+..|++...|
T Consensus 177 elhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 177 ELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred HHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 9999999998 7777776653 2345666667665443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.6e-18 Score=140.88 Aligned_cols=153 Identities=29% Similarity=0.516 Sum_probs=115.2
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.+++.|.+++|.++ .+|+.++.+.+|+.|++++|+++ ++|.+++.+++|+.|+++-|++. .+|..|+.++.|++||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 46777777777776 66777777888888888888776 67777788888888888777776 77777888888888888
Q ss_pred cCCcCCC-cCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCch
Q 037538 158 SANDFIG-QIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 158 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 235 (461)
.+|.+.. .+|..|..+..|+.|+++.|.+. .+|..++++++|+.|.+.+|.+. .+|..++.+..|++|++.+|.+.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 8777753 46667777777777888887777 67777777788888887777776 67777777777777777666554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.59 E-value=1.3e-14 Score=149.61 Aligned_cols=154 Identities=31% Similarity=0.491 Sum_probs=118.5
Q ss_pred cccCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC----cceeeEEecCC--C--CcEEEEEcCCCCcccccCccccCC
Q 037538 30 ESATIEADKLALLDFKNHLTQDPLQIMSSWNDSVHF----CNWVGVTCSPS--N--GRVTVLKLESKQLVGSIPASIGNL 101 (461)
Q Consensus 30 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~----c~w~gv~c~~~--~--~~v~~L~l~~~~l~~~~~~~l~~l 101 (461)
...+.+.|..||..+|+++. .+.. .+|... .| |.|.|+.|... . ..|+.|+|+++.+.|.+|..+..+
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~-~~~~--~~W~g~-~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L 441 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLG-LPLR--FGWNGD-PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKL 441 (623)
T ss_pred ccccCchHHHHHHHHHHhcC-Cccc--CCCCCC-CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCC
Confidence 33456778999999999885 3322 378643 22 27999999532 1 258888888888888888888888
Q ss_pred CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCC-CCCcEEE
Q 037538 102 TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISL-TKLEIIR 180 (461)
Q Consensus 102 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~ 180 (461)
++|+.|+|++|.+.|.+|..+..+++|+.|+|++|+++|.+|..++++++|++|++++|.+++.+|..++.. .++..++
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence 888888888888888888888888888888888888888888888888888888888888888888877653 4566677
Q ss_pred ccCCCCc
Q 037538 181 LGTSNLT 187 (461)
Q Consensus 181 l~~n~l~ 187 (461)
+.+|...
T Consensus 522 ~~~N~~l 528 (623)
T PLN03150 522 FTDNAGL 528 (623)
T ss_pred ecCCccc
Confidence 7766543
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.32 E-value=4.2e-14 Score=135.32 Aligned_cols=177 Identities=25% Similarity=0.422 Sum_probs=135.5
Q ss_pred CCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccc
Q 037538 266 SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLST 345 (461)
Q Consensus 266 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 345 (461)
..-...|++.|++. .+|..+..+..|+.+.++.|.+. .++..+.++..|+.++|+.|.++ .+|..++.++
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-------~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp- 144 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-------TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP- 144 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-------ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-
Confidence 34455667777765 56666666667777777777666 45566677777888888888877 6777777774
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecc
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 425 (461)
|+.|-+++|+++ .+|+.++..+.|..||.+.|++. .+|..++.+.+|+.|.+..|++. .+|+.+.. =.|..||++
T Consensus 145 -Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfS 219 (722)
T KOG0532|consen 145 -LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFS 219 (722)
T ss_pred -ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cceeeeecc
Confidence 888888888887 57777888888888888888887 77888888888888888888887 67777774 447888888
Q ss_pred cccccccCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 426 ENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 426 ~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
.|+++ .+|-+|.+++.|++|-|.+|++. +-|.
T Consensus 220 cNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPA 251 (722)
T KOG0532|consen 220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPA 251 (722)
T ss_pred cCcee-ecchhhhhhhhheeeeeccCCCC-CChH
Confidence 88888 78888888888888888888885 4443
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=1.3e-11 Score=121.62 Aligned_cols=179 Identities=35% Similarity=0.540 Sum_probs=100.0
Q ss_pred CCCCCEEEcccccccccCCccCCCCC-CCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhc
Q 037538 265 ASNLQVLDFAENGLTGTIPENFGSLK-DLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANL 343 (461)
Q Consensus 265 ~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~ 343 (461)
.+.++.|++.+|.++ .++....... +|+.|++++|++.. ++..+..+++|+.|++++|++. .+|......
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-------l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~ 185 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-------LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNL 185 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchhh-------hhhhhhccccccccccCCchhh-hhhhhhhhh
Confidence 345556666665555 3333344442 56666666665542 2234455566666666666665 344333233
Q ss_pred cccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeee
Q 037538 344 STHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLL 423 (461)
Q Consensus 344 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 423 (461)
+ .|+.|++++|+++ .+|..+.....|+++.+++|... ..+..+..+.++..+.+.+|++. ..+..++.++.++.|+
T Consensus 186 ~-~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 186 S-NLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLD 261 (394)
T ss_pred h-hhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceec
Confidence 3 5666666666665 34444444445666666666433 34445566666666666666665 2355566666666666
Q ss_pred cccccccccCCccCCCCCCCCEEEccCCCCcccCC
Q 037538 424 MEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 424 l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
+++|+++. ++. +....+++.|++++|.+...+|
T Consensus 262 ~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 262 LSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccccc-ccc-ccccCccCEEeccCccccccch
Confidence 66666663 333 6666666666666666654443
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=9.6e-13 Score=119.18 Aligned_cols=90 Identities=28% Similarity=0.414 Sum_probs=49.7
Q ss_pred cccCCCCCCEEecCCCCCccc----CchhccCCCCCCEEeCCCCCCCC----CCCcC-------CCCCCCCCEEEccCCc
Q 037538 97 SIGNLTNLTGINLFQNRFHGQ----IPEEIGRLQKLQDLNLTYNYLSG----KIPTN-------LSHCTELRSFEASAND 161 (461)
Q Consensus 97 ~l~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~-------~~~l~~L~~L~l~~n~ 161 (461)
.+..+..+++++|++|.|.-. +...+.+.++|+..++++- ++| .+|.. +..+++|+++|||+|.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 344566677777777766422 3344555667777766653 222 23322 3345567777777776
Q ss_pred CCCcCchh----hcCCCCCcEEEccCCCCc
Q 037538 162 FIGQIPDQ----LISLTKLEIIRLGTSNLT 187 (461)
Q Consensus 162 ~~~~~~~~----l~~l~~L~~L~l~~n~l~ 187 (461)
+-...+.. +.++..|++|++.+|.+.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 64333332 345566666666666554
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.24 E-value=1.6e-11 Score=126.65 Aligned_cols=113 Identities=33% Similarity=0.539 Sum_probs=97.0
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecc
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 425 (461)
.++.|++++|.+.|.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788999999998899889999999999999999998999889999999999999999999999999999999999999
Q ss_pred cccccccCCccCCCC-CCCCEEEccCCCCcccCC
Q 037538 426 ENRFEGSIPPSLGNC-KKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 426 ~n~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~ip 458 (461)
+|+++|.+|..+... .++..+++.+|+....+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999887653 467788888887655444
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.24 E-value=3.7e-12 Score=115.45 Aligned_cols=108 Identities=18% Similarity=0.246 Sum_probs=59.1
Q ss_pred cccEEEccCCcCcc----cCchhhhcCCCCCeeecccCcCccc----cchhhhcCCCCCeeccccccCcccCChhh----
Q 037538 346 HLRILTMGYNLMHG----NIPVGIENLVNLSLLGLEGNNLSGS----VPEVIGRLNKLEGLELNANKFSGFMPSSL---- 413 (461)
Q Consensus 346 ~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~~---- 413 (461)
.|+.+.++.|.+.. .+-..+..++.|++|||.+|.|+.. +...+..+++|+.|++++|.+......+|
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 45555555554431 1223455666666666666666532 33445556666677777766653332222
Q ss_pred h-cCccCCeeeccccccccc----CCccCCCCCCCCEEEccCCCC
Q 037538 414 G-NLTVLSRLLMEENRFEGS----IPPSLGNCKKLQVLNLSSNNL 453 (461)
Q Consensus 414 ~-~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~ls~N~l 453 (461)
. ..+.|+++.+.+|.|+.. +..++...+.|..|++++|.+
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2 246677777777766531 223344456677777777766
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=5.8e-11 Score=116.97 Aligned_cols=176 Identities=28% Similarity=0.442 Sum_probs=86.6
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCC-CCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhcc---CCCCCcEEE
Q 037538 173 LTKLEIIRLGTSNLTGNIPAWVGNFS-SLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGL---TLPNLKIFA 248 (461)
Q Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~---~l~~L~~L~ 248 (461)
++.++.+++.+|.++ .++......+ +|+.|++++|.+. .+|..++.+++|+.|++++|.+.++.. ..++|+.++
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 344555555555544 3333333342 5555555555554 333444555555555555555544332 334444444
Q ss_pred ccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEcc
Q 037538 249 GGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLA 328 (461)
Q Consensus 249 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 328 (461)
+++|.++ .+|..+.....|+++.+++|... ..+..+..+.++..+.+..|++.. .+..+..+++++.|+++
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-------~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-------LPESIGNLSNLETLDLS 263 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-------ccchhccccccceeccc
Confidence 4544444 24444444555777777777422 234445556666666666665542 13334455556666666
Q ss_pred CCcCccccchHHHhccccccEEEccCCcCcccCc
Q 037538 329 QNGFGGEMPISIANLSTHLRILTMGYNLMHGNIP 362 (461)
Q Consensus 329 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 362 (461)
+|.++ .++. +.... +++.++++++.+....|
T Consensus 264 ~n~i~-~i~~-~~~~~-~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 264 NNQIS-SISS-LGSLT-NLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccc-cccc-ccccC-ccCEEeccCccccccch
Confidence 65554 2222 33333 55555555555554333
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=5.6e-11 Score=125.45 Aligned_cols=128 Identities=25% Similarity=0.305 Sum_probs=76.9
Q ss_pred cEEEEEcCCCCcccccCccccCCCCCCEEecCCCC--CcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEE
Q 037538 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNR--FHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFE 156 (461)
Q Consensus 79 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 156 (461)
.++++.+-++.+. .++.. ...++|+.|-+..|. +.......|..++.|++||+++|.--+.+|..++++-+||+|+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 4455555555443 22222 123356666666664 3322333456677777777776655556777777777777777
Q ss_pred ccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCC
Q 037538 157 ASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNN 209 (461)
Q Consensus 157 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (461)
++++.+. .+|..++++.+|.+|++..+.....+|.....+.+|++|.+....
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 7777665 667777777777777777665444445555556777777766544
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.3e-11 Score=113.41 Aligned_cols=209 Identities=21% Similarity=0.148 Sum_probs=139.5
Q ss_pred cCCCCCcEEEccCccCccccC-hhhcCCCCCCEEEcccccccccC--CccCCCCCCCCEEEcccCcCcccCCCCchhhhh
Q 037538 239 LTLPNLKIFAGGVNYFTGSIP-VSLSNASNLQVLDFAENGLTGTI--PENFGSLKDLVRLNFDQNELGSREIGDLNFLKF 315 (461)
Q Consensus 239 ~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 315 (461)
..+.+|+.+.+.++....... .....+++++.||++.|-+.... ......+|+|+.|+++.|++........
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~----- 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT----- 192 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-----
Confidence 346678888888776542211 45677889999999998776432 2345678899999999998765322111
Q ss_pred hcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccc--hhhhcCC
Q 037538 316 LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVP--EVIGRLN 393 (461)
Q Consensus 316 l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~--~~l~~~~ 393 (461)
-.-+++|+.|.++.|+++..--.++....|+++.|++..|...+.-.....-+..|+.|||++|++.. .+ ...+.++
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~ 271 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLP 271 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-ccccccccccc
Confidence 12457888889999888743333343334588999998885322222233445678889999988873 33 3456788
Q ss_pred CCCeeccccccCccc-CChh-----hhcCccCCeeecccccccccCC--ccCCCCCCCCEEEccCCCCc
Q 037538 394 KLEGLELNANKFSGF-MPSS-----LGNLTVLSRLLMEENRFEGSIP--PSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 394 ~L~~L~L~~n~l~~~-~~~~-----~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~L~ls~N~l~ 454 (461)
.|+.|+++.|.+... .|+. -..+++|+.|++..|+|. ..+ ..+..+++|+.|.+..|.++
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 888888888887633 2333 345788999999999886 333 24556677788888888775
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=3.2e-12 Score=122.61 Aligned_cols=167 Identities=25% Similarity=0.347 Sum_probs=85.6
Q ss_pred cEEecCCCCchhhccC---CCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCc
Q 037538 225 GFFTLYENFISDVGLT---LPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNE 301 (461)
Q Consensus 225 ~~L~l~~n~l~~~~~~---l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 301 (461)
...+++.|.+.++... +..|+.+.+..|.+. .+|..++++..|..+|++.|+++ .+|..+..+ -|+.|-+++|+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNK 154 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCc
Confidence 3455566655444321 223444444444443 34555555556666666666554 344444433 25555555555
Q ss_pred CcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcC
Q 037538 302 LGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNL 381 (461)
Q Consensus 302 l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 381 (461)
++. ++..++..+.|..|+.+.|.+. .+|..+..+. +|+.|.+..|.+. .+|+.+..++ |..||+|.|++
T Consensus 155 l~~-------lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~-slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNki 223 (722)
T KOG0532|consen 155 LTS-------LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT-SLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKI 223 (722)
T ss_pred ccc-------CCcccccchhHHHhhhhhhhhh-hchHHhhhHH-HHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCce
Confidence 553 2333344455555555555554 4455555544 5555555555554 3444444332 55555555555
Q ss_pred ccccchhhhcCCCCCeeccccccCc
Q 037538 382 SGSVPEVIGRLNKLEGLELNANKFS 406 (461)
Q Consensus 382 ~~~~~~~l~~~~~L~~L~L~~n~l~ 406 (461)
. .+|.+|.+++.|++|-|.+|.+.
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCC
Confidence 5 55555555555555555555554
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.9e-10 Score=97.80 Aligned_cols=126 Identities=24% Similarity=0.320 Sum_probs=44.6
Q ss_pred cCCCCCCEEecCCCCCcccCchhcc-CCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhh-cCCCCC
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIG-RLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQL-ISLTKL 176 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L 176 (461)
.+..++++|+|.+|.|+ .+. .++ .+.+|+.|++++|.++ .+. .+..+++|++|++++|+++. +.+.+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence 44556788888888876 332 354 5678888888888887 343 57778888888888888874 33344 357888
Q ss_pred cEEEccCCCCccc-CCccCCCCCCCCEEECccCCCcccCC---hhhhcCCCCcEEec
Q 037538 177 EIIRLGTSNLTGN-IPAWVGNFSSLQVLLLARNNLHGSIP---NELGQLSALGFFTL 229 (461)
Q Consensus 177 ~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l 229 (461)
++|++++|++... .-..+..+++|++|++.+|.+...-- ..+..+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 8888888887642 12345667888888888887763321 23456666666554
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=3.5e-11 Score=106.93 Aligned_cols=133 Identities=28% Similarity=0.308 Sum_probs=108.4
Q ss_pred hcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCC
Q 037538 316 LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKL 395 (461)
Q Consensus 316 l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L 395 (461)
+..++.|+++|+++|.++ .+.++..-.+ .++.|++++|.++.. ..+..+++|+.||||+|.++ .+-.|=..+.+.
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~P-kir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAP-KLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhcc-ceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 344578999999999987 6766665554 999999999999843 34888999999999999998 556666678899
Q ss_pred CeeccccccCcccCChhhhcCccCCeeecccccccccC-CccCCCCCCCCEEEccCCCCcc
Q 037538 396 EGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSI-PPSLGNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 396 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~ls~N~l~~ 455 (461)
+.|.|++|.+. .-..+..+.+|..||+++|+|.... -..+++++-|+.+.+.+|++.+
T Consensus 355 KtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 355 KTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99999999885 2346677889999999999997432 2478999999999999999975
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.6e-11 Score=112.11 Aligned_cols=207 Identities=23% Similarity=0.227 Sum_probs=152.0
Q ss_pred hhcCCCCcEEecCCCCchhh-----ccCCCCCcEEEccCccCccccC--hhhcCCCCCCEEEcccccccccCCcc-CCCC
Q 037538 218 LGQLSALGFFTLYENFISDV-----GLTLPNLKIFAGGVNYFTGSIP--VSLSNASNLQVLDFAENGLTGTIPEN-FGSL 289 (461)
Q Consensus 218 l~~l~~L~~L~l~~n~l~~~-----~~~l~~L~~L~l~~n~~~~~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~l 289 (461)
=.++.+|+...+.+...... ...+++++.|+++.|-+....+ .....+++|+.|+++.|.+....... -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 34667888888888776544 3568999999999998875433 45677899999999999987543332 2367
Q ss_pred CCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccC-chhhhcC
Q 037538 290 KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNI-PVGIENL 368 (461)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~l 368 (461)
++|++|.++.|.++-. .+...+..+|+|+.|++.+|.......... +....|+.|++++|++.... -...+.+
T Consensus 197 ~~lK~L~l~~CGls~k-----~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~-~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWK-----DVQWILLTFPSLEVLYLEANEIILIKATST-KILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhhheEEeccCCCCHH-----HHHHHHHhCCcHHHhhhhcccccceecchh-hhhhHHhhccccCCcccccccccccccc
Confidence 8999999999998742 445566789999999999995322211111 22238999999999976422 1346788
Q ss_pred CCCCeeecccCcCccc-cchh-----hhcCCCCCeeccccccCcccCC--hhhhcCccCCeeecccccccc
Q 037538 369 VNLSLLGLEGNNLSGS-VPEV-----IGRLNKLEGLELNANKFSGFMP--SSLGNLTVLSRLLMEENRFEG 431 (461)
Q Consensus 369 ~~L~~L~Ls~n~l~~~-~~~~-----l~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~ 431 (461)
+.|+.|.++.+.+... .|+. ...+++|++|+++.|++. .++ ..+..+++|+.|.+..|.++.
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence 9999999999988743 2322 356899999999999996 233 356677888999988888874
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.02 E-value=2.1e-10 Score=121.11 Aligned_cols=295 Identities=21% Similarity=0.215 Sum_probs=167.4
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCC--CCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCC
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNY--LSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKL 176 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 176 (461)
.+....+...+.+|.+. .++... .+++|++|-+..|. +.......|..++.|++||+++|.--+.+|..++++-+|
T Consensus 520 ~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred cchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 34467788888888775 444433 44589999998886 442333457789999999999988778999999999999
Q ss_pred cEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchh------hccCCCCCcEEEcc
Q 037538 177 EIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD------VGLTLPNLKIFAGG 250 (461)
Q Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------~~~~l~~L~~L~l~ 250 (461)
++|+++++.+. .+|..+.++++|.+|++..+.....+|.....+++|++|.+....... ....+..|+.+...
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 99999999998 899999999999999999988766667777779999999886543210 01223444444432
Q ss_pred CccCccccChhhcCCCCCC----EEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEE
Q 037538 251 VNYFTGSIPVSLSNASNLQ----VLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLG 326 (461)
Q Consensus 251 ~n~~~~~~~~~l~~~~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~ 326 (461)
.... .+-..+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+.........-......++++..+.
T Consensus 677 ~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~ 753 (889)
T KOG4658|consen 677 ISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS 753 (889)
T ss_pred cchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence 2221 0001111122222 2222222211 2334566677777777777766542211000000000112222222
Q ss_pred ccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccc-cchhhhcCCCCCeeccc
Q 037538 327 LAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGS-VPEVIGRLNKLEGLELN 401 (461)
Q Consensus 327 L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~~~~L~~L~L~ 401 (461)
+..+... ..+.+. ..+++|+.+++..+.....+......+..+..+.+..+.+.+. .-...+.++++..+.+.
T Consensus 754 ~~~~~~~-r~l~~~-~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~ 827 (889)
T KOG4658|consen 754 ILNCHML-RDLTWL-LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS 827 (889)
T ss_pred hhccccc-cccchh-hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence 2222111 111111 2234677777776665444443444445555555555555543 23333444444443333
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=1.3e-10 Score=103.46 Aligned_cols=82 Identities=24% Similarity=0.328 Sum_probs=35.6
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccC-ChhhhcCccCCeeec
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFM-PSSLGNLTVLSRLLM 424 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l 424 (461)
+|+.|++++|.++. +..+-..+.+.+.|.|+.|.+.. + ..+..+-+|.+|++++|++...- ...++++|.|+.+.+
T Consensus 330 ~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 330 QLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred cceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence 44444444444432 22233344444455555544431 1 22344444555555555543211 123445555555555
Q ss_pred cccccc
Q 037538 425 EENRFE 430 (461)
Q Consensus 425 ~~n~l~ 430 (461)
.+|++.
T Consensus 407 ~~NPl~ 412 (490)
T KOG1259|consen 407 TGNPLA 412 (490)
T ss_pred cCCCcc
Confidence 555554
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=4.7e-10 Score=95.41 Aligned_cols=109 Identities=27% Similarity=0.353 Sum_probs=33.7
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCcCCC-CCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccC-CCCCC
Q 037538 122 IGRLQKLQDLNLTYNYLSGKIPTNLS-HCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWV-GNFSS 199 (461)
Q Consensus 122 l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~ 199 (461)
+.++.++++|+|++|.++ .+ +.++ .+.+|+.|++++|.++.. +.+..+++|++|++++|.++. +...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 345557788888888877 33 3455 577888888888887642 356677888888888888874 33333 35778
Q ss_pred CCEEECccCCCcccC-ChhhhcCCCCcEEecCCCCch
Q 037538 200 LQVLLLARNNLHGSI-PNELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 200 L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~ 235 (461)
|++|++++|++...- -..+..+++|+.|++.+|.+.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 888888888776321 134556666666666666553
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=1.8e-09 Score=75.42 Aligned_cols=61 Identities=36% Similarity=0.536 Sum_probs=43.0
Q ss_pred CCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCC
Q 037538 393 NKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNL 453 (461)
Q Consensus 393 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l 453 (461)
++|++|++++|+++...++.|..+++|+.|++++|.++...|..|.++++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3567777777777755556677777777777777777766666777777777777777764
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.76 E-value=1.8e-09 Score=106.69 Aligned_cols=245 Identities=29% Similarity=0.323 Sum_probs=114.8
Q ss_pred CCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEE
Q 037538 148 HCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFF 227 (461)
Q Consensus 148 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 227 (461)
.+..++.+++..|.+.. +-..+..+.+|+.+++.+|.+.. +...+..+++|++|++++|.++... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 44555555666665542 23335666677777777776663 2222555666666666666665322 23334444444
Q ss_pred ecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCC-ccCCCCCCCCEEEcccCcCcccC
Q 037538 228 TLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIP-ENFGSLKDLVRLNFDQNELGSRE 306 (461)
Q Consensus 228 ~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~ 306 (461)
++.+|.+..+. .+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+....
T Consensus 146 ~l~~N~i~~~~----------------------~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 146 NLSGNLISDIS----------------------GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE 202 (414)
T ss_pred eeccCcchhcc----------------------CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc
Confidence 44444443322 12335666677777776654333 1 355566666666666554321
Q ss_pred CCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccc
Q 037538 307 IGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVP 386 (461)
Q Consensus 307 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~ 386 (461)
.+.....+..+++..|.++..-+....... +|+.+++.+|.+.. .+..+..+..+..+++++|++...
T Consensus 203 --------~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~-~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~-- 270 (414)
T KOG0531|consen 203 --------GLDLLKKLVLLSLLDNKISKLEGLNELVML-HLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL-- 270 (414)
T ss_pred --------chHHHHHHHHhhcccccceeccCcccchhH-HHHHHhcccCcccc-ccccccccccccccchhhcccccc--
Confidence 111222333335555554421110000000 15555555555542 223344455555555555555432
Q ss_pred hhhhcCCCCCeeccccccCccc--C-Chh-hhcCccCCeeecccccccc
Q 037538 387 EVIGRLNKLEGLELNANKFSGF--M-PSS-LGNLTVLSRLLMEENRFEG 431 (461)
Q Consensus 387 ~~l~~~~~L~~L~L~~n~l~~~--~-~~~-~~~l~~L~~L~l~~n~l~~ 431 (461)
..+.....+..+..+.|.+... . ... ....+.++.+.+.+|.+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 271 EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 1223334444455555544311 0 111 2233445555555555443
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=4.6e-09 Score=73.36 Aligned_cols=59 Identities=32% Similarity=0.495 Sum_probs=30.6
Q ss_pred CCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeeccccc
Q 037538 370 NLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENR 428 (461)
Q Consensus 370 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 428 (461)
+|++|++++|++....+..|.++++|++|++++|+++...+++|..+++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555553333445555555555555555554444555555555555555554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=8.5e-10 Score=109.03 Aligned_cols=132 Identities=27% Similarity=0.322 Sum_probs=92.3
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcE
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEI 178 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 178 (461)
..+..++.+++..|.+. .+-..+..+++|+.|++.+|.+. .+...+..+++|++|++++|.++.. ..+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 34566677777777776 33344677888888888888887 4444467788888888888888654 34566677888
Q ss_pred EEccCCCCcccCCccCCCCCCCCEEECccCCCcccCC-hhhhcCCCCcEEecCCCCchhh
Q 037538 179 IRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP-NELGQLSALGFFTLYENFISDV 237 (461)
Q Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~ 237 (461)
|++++|.+.. ...+..++.|+.+++++|.+...-+ . ...+.+++.+++..|.+..+
T Consensus 145 L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 145 LNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred heeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 8888888873 2345557888888888888874333 1 46677777777777776543
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.1e-09 Score=97.42 Aligned_cols=180 Identities=21% Similarity=0.198 Sum_probs=119.2
Q ss_pred CCcEEEccCccCccc-cChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCc-CcccCCCCchhhhhhcCCC
Q 037538 243 NLKIFAGGVNYFTGS-IPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNE-LGSREIGDLNFLKFLANCT 320 (461)
Q Consensus 243 ~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~~~ 320 (461)
.++.++++...++.. .-.-+..|.+|+.|.+.++++++.+...+..-.+|+.++++.+. ++. +.....+.+|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-----n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE-----NALQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch-----hHHHHHHHhhh
Confidence 355555555544421 22345667788888888888877777777777888888887642 332 24455677888
Q ss_pred CCCEEEccCCcCccc-cchHHHhccccccEEEccCCcC--cc-cCchhhhcCCCCCeeecccCcC-ccccchhhhcCCCC
Q 037538 321 SLEVLGLAQNGFGGE-MPISIANLSTHLRILTMGYNLM--HG-NIPVGIENLVNLSLLGLEGNNL-SGSVPEVIGRLNKL 395 (461)
Q Consensus 321 ~L~~L~L~~n~~~~~-~~~~~~~~~~~L~~L~l~~n~l--~~-~~p~~~~~l~~L~~L~Ls~n~l-~~~~~~~l~~~~~L 395 (461)
.|.+|+++.+....+ +...+....++|+.|+++++.- .. .+..-...+++|.+||||+|.. +......|.+++.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 888888888865433 2333444455788888887741 11 1222235789999999998754 43444567788999
Q ss_pred CeeccccccCcccCChh---hhcCccCCeeecccccc
Q 037538 396 EGLELNANKFSGFMPSS---LGNLTVLSRLLMEENRF 429 (461)
Q Consensus 396 ~~L~L~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l 429 (461)
++|.++.|.. .+|+. +...|+|.+|++.++-=
T Consensus 341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eeeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence 9999998875 46654 45568899998877643
No 44
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.59 E-value=5.8e-08 Score=62.10 Aligned_cols=40 Identities=50% Similarity=0.977 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCC--CCCcceeeEEec
Q 037538 35 EADKLALLDFKNHLTQDPLQIMSSWNDS--VHFCNWVGVTCS 74 (461)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~--~~~c~w~gv~c~ 74 (461)
++|++||++||.++..+|...+.+|... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 5799999999999987777889999987 799999999995
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=2.8e-08 Score=88.63 Aligned_cols=83 Identities=20% Similarity=0.325 Sum_probs=32.8
Q ss_pred CCCCEEeCCCCCCCC--CCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCccc-CCccCCCCCCCCE
Q 037538 126 QKLQDLNLTYNYLSG--KIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGN-IPAWVGNFSSLQV 202 (461)
Q Consensus 126 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~ 202 (461)
+.++.+||.+|.++. .+.+.+.+++.|++|+++.|.+...+-..-....+|++|-|.+..+... ....+..+|++++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 344444444444432 2222233444444444444444321111002233444444444443321 1222334455555
Q ss_pred EECccC
Q 037538 203 LLLARN 208 (461)
Q Consensus 203 L~l~~n 208 (461)
|+++.|
T Consensus 151 lHmS~N 156 (418)
T KOG2982|consen 151 LHMSDN 156 (418)
T ss_pred hhhccc
Confidence 555554
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.44 E-value=4.1e-08 Score=77.63 Aligned_cols=118 Identities=20% Similarity=0.258 Sum_probs=74.7
Q ss_pred hhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCC
Q 037538 315 FLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNK 394 (461)
Q Consensus 315 ~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~ 394 (461)
.+.....|+..++++|.+. .+|..+...++.++.+++++|+++ .+|+.+..++.|+.|+++.|.+. ..|..+..+.+
T Consensus 48 ~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~ 124 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIK 124 (177)
T ss_pred HHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHh
Confidence 3344455666677777766 556666555556777777777777 46777777788888888888777 55666666777
Q ss_pred CCeeccccccCcccCChhhhcCccCCeeecccccccccCCcc
Q 037538 395 LEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPS 436 (461)
Q Consensus 395 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (461)
+-+|+..+|..- .+|.++-.-+..-..++.++++.+.-+..
T Consensus 125 l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 125 LDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred HHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence 777777777766 45544333233333344555565554443
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.42 E-value=1.6e-07 Score=82.81 Aligned_cols=193 Identities=23% Similarity=0.255 Sum_probs=112.9
Q ss_pred hhcCCCCCCEEEcccccccccCCc----cCCCCCCCCEEEcccCcCcccCCCC-------chhhhhhcCCCCCCEEEccC
Q 037538 261 SLSNASNLQVLDFAENGLTGTIPE----NFGSLKDLVRLNFDQNELGSREIGD-------LNFLKFLANCTSLEVLGLAQ 329 (461)
Q Consensus 261 ~l~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~~~~l~~~~~L~~L~L~~ 329 (461)
.+.+|+.|+..++++|.+....|+ .+.+-..|++|.+++|.+....-.. .....-..+-|.|+.+....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 345566666666666666544443 2345556666666666554321110 01112234557788888888
Q ss_pred CcCccccchH----HHhccccccEEEccCCcCcccC-----chhhhcCCCCCeeecccCcCccc----cchhhhcCCCCC
Q 037538 330 NGFGGEMPIS----IANLSTHLRILTMGYNLMHGNI-----PVGIENLVNLSLLGLEGNNLSGS----VPEVIGRLNKLE 396 (461)
Q Consensus 330 n~~~~~~~~~----~~~~~~~L~~L~l~~n~l~~~~-----p~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~ 396 (461)
|++- ..+.. ....-..|+.+.+.+|.+...- -..+..+.+|+.||+.+|.|+-. +...++.++.|+
T Consensus 167 NRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 NRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred chhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 8764 22221 1111136788888888765321 12345678888999999888743 334455677788
Q ss_pred eeccccccCcccCChh----hh--cCccCCeeecccccccccCCccC-------CCCCCCCEEEccCCCCc
Q 037538 397 GLELNANKFSGFMPSS----LG--NLTVLSRLLMEENRFEGSIPPSL-------GNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 397 ~L~L~~n~l~~~~~~~----~~--~l~~L~~L~l~~n~l~~~~p~~l-------~~l~~L~~L~ls~N~l~ 454 (461)
.|.+..|-++.....+ |. ..+.|..|...+|.+.+.+...+ ..++-|..|-+.||.|.
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 8888888877443332 22 24778888888887765443321 34566666777777765
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.41 E-value=4.8e-09 Score=103.86 Aligned_cols=125 Identities=26% Similarity=0.234 Sum_probs=67.5
Q ss_pred CCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchh-hhcCCCCCeec
Q 037538 321 SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEV-IGRLNKLEGLE 399 (461)
Q Consensus 321 ~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~-l~~~~~L~~L~ 399 (461)
.|...++++|.+. .+...+.-++ .++.|+|++|+++.. ..+..++.|++|||+.|.+. .+|.. ..++. |+.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~-ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLP-ALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHH-Hhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeee
Confidence 4555556666554 3444444333 666666666666532 25566666666666666665 33321 22233 66666
Q ss_pred cccccCcccCChhhhcCccCCeeecccccccccCC-ccCCCCCCCCEEEccCCCC
Q 037538 400 LNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIP-PSLGNCKKLQVLNLSSNNL 453 (461)
Q Consensus 400 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~ls~N~l 453 (461)
+++|.++. -..+.++++|+.||+++|-+.+.-. .-+..+..|+.|.|.||++
T Consensus 239 lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66666652 2345566666666666666654211 1223445566666666665
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.38 E-value=1.6e-07 Score=82.91 Aligned_cols=188 Identities=22% Similarity=0.303 Sum_probs=95.1
Q ss_pred CCCCCCEEecCCCCCccc----CchhccCCCCCCEEeCCCCCCCC----CCC-------cCCCCCCCCCEEEccCCcCCC
Q 037538 100 NLTNLTGINLFQNRFHGQ----IPEEIGRLQKLQDLNLTYNYLSG----KIP-------TNLSHCTELRSFEASANDFIG 164 (461)
Q Consensus 100 ~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~----~~p-------~~~~~l~~L~~L~l~~n~~~~ 164 (461)
.+..++.++||+|.|... +...+.+-.+|+..+++.- ++| .++ ..+..|++|+..+||+|.|..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 456666777777766433 3333445566666666543 222 122 234567777888888777765
Q ss_pred cCchh----hcCCCCCcEEEccCCCCcccCCcc-------------CCCCCCCCEEECccCCCcccCChh-----hhcCC
Q 037538 165 QIPDQ----LISLTKLEIIRLGTSNLTGNIPAW-------------VGNFSSLQVLLLARNNLHGSIPNE-----LGQLS 222 (461)
Q Consensus 165 ~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~l~~n~~~~~~~~~-----l~~l~ 222 (461)
..|+. ++.-+.|++|.+++|.+...--.- ..+-|.|+++....|++.. .+.. +..-.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhc
Confidence 55543 456677888888777665211111 1233566666666666542 1111 11122
Q ss_pred CCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEccccccccc----CCccCCCCCCCCEEEcc
Q 037538 223 ALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGT----IPENFGSLKDLVRLNFD 298 (461)
Q Consensus 223 ~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~ 298 (461)
+|+.+.+..|.|..-+. +-.+-..+..+.+|+.||+.+|.++-. +...+..++.|+.|.+.
T Consensus 186 ~lk~vki~qNgIrpegv---------------~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 186 NLKEVKIQQNGIRPEGV---------------TMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred CceeEEeeecCcCcchh---------------HHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 34444444433321110 000111234456677777777766532 22234455556666666
Q ss_pred cCcCcc
Q 037538 299 QNELGS 304 (461)
Q Consensus 299 ~n~l~~ 304 (461)
.|-+..
T Consensus 251 DClls~ 256 (388)
T COG5238 251 DCLLSN 256 (388)
T ss_pred chhhcc
Confidence 665544
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=4.8e-09 Score=103.87 Aligned_cols=127 Identities=28% Similarity=0.317 Sum_probs=75.8
Q ss_pred CCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhcccc
Q 037538 267 NLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTH 346 (461)
Q Consensus 267 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~ 346 (461)
.|...+.+.|.+. .....+.-++.++.|+|+.|+++. .+.+..+++|+.|||++|.+. .+|. +.....+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~--------v~~Lr~l~~LkhLDlsyN~L~-~vp~-l~~~gc~ 233 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK--------VDNLRRLPKLKHLDLSYNCLR-HVPQ-LSMVGCK 233 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh--------hHHHHhcccccccccccchhc-cccc-cchhhhh
Confidence 4556666666654 233455556667777777776654 235566677777777777665 3332 1111125
Q ss_pred ccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccc-cchhhhcCCCCCeeccccccCc
Q 037538 347 LRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGS-VPEVIGRLNKLEGLELNANKFS 406 (461)
Q Consensus 347 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~~~~L~~L~L~~n~l~ 406 (461)
|..|.+++|.++.. .++.++.+|+.||+++|-+.+- --.-++.+..|+.|+|.+|.+-
T Consensus 234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77777777776642 2466777777777777766541 1122445667777777777654
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=1.7e-07 Score=83.77 Aligned_cols=184 Identities=21% Similarity=0.137 Sum_probs=105.5
Q ss_pred hhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCcc--ccch
Q 037538 261 SLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGG--EMPI 338 (461)
Q Consensus 261 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~--~~~~ 338 (461)
.+.++|.|+.|+++.|.+...+...-....+|++|.|.+..+.-. ..-..+..+|.+++|+++.|++.- .-..
T Consensus 92 ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~-----~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~ 166 (418)
T KOG2982|consen 92 ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWT-----QSTSSLDDLPKVTELHMSDNSLRQLNLDDN 166 (418)
T ss_pred HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChh-----hhhhhhhcchhhhhhhhccchhhhhccccc
Confidence 345667777777777766544322113445677777766554321 223445666777777777774320 0011
Q ss_pred HHHhccccccEEEccCCcCcc--cCchhhhcCCCCCeeecccCcCccc-cchhhhcCCCCCeeccccccCcc-cCChhhh
Q 037538 339 SIANLSTHLRILTMGYNLMHG--NIPVGIENLVNLSLLGLEGNNLSGS-VPEVIGRLNKLEGLELNANKFSG-FMPSSLG 414 (461)
Q Consensus 339 ~~~~~~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~~~~L~~L~L~~n~l~~-~~~~~~~ 414 (461)
......+.++.+.+..|...- ....--.-+|++..+-+..|.+... --+....++.+..|+|+.|++.. ...+++.
T Consensus 167 c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln 246 (418)
T KOG2982|consen 167 CIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALN 246 (418)
T ss_pred cccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHc
Confidence 112222345555555554321 0001112357888888888877532 12334556777788888888862 2235677
Q ss_pred cCccCCeeecccccccccCC----c--cCCCCCCCCEEEcc
Q 037538 415 NLTVLSRLLMEENRFEGSIP----P--SLGNCKKLQVLNLS 449 (461)
Q Consensus 415 ~l~~L~~L~l~~n~l~~~~p----~--~l~~l~~L~~L~ls 449 (461)
.+++|..|.++++++.+.+. . -+++++++++|+=+
T Consensus 247 ~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 247 GFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 78888889898888765432 2 24778888888754
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=4.4e-08 Score=87.46 Aligned_cols=179 Identities=17% Similarity=0.199 Sum_probs=128.0
Q ss_pred CCCCEEEccccccccc-CCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCc-CccccchHHHhc
Q 037538 266 SNLQVLDFAENGLTGT-IPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNG-FGGEMPISIANL 343 (461)
Q Consensus 266 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~-~~~~~~~~~~~~ 343 (461)
+.++++|++...++.. .-..+..+.+|+.|.+.++++.+ .+...+++..+|+.|+++.++ |+......+..-
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD------~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD------PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc------HHHHHHhccccceeeccccccccchhHHHHHHHh
Confidence 4689999998877633 22245788999999999999988 777888899999999999864 553333333333
Q ss_pred cccccEEEccCCcCcccCchh-hhc-CCCCCeeecccCcC---ccccchhhhcCCCCCeecccccc-CcccCChhhhcCc
Q 037538 344 STHLRILTMGYNLMHGNIPVG-IEN-LVNLSLLGLEGNNL---SGSVPEVIGRLNKLEGLELNANK-FSGFMPSSLGNLT 417 (461)
Q Consensus 344 ~~~L~~L~l~~n~l~~~~p~~-~~~-l~~L~~L~Ls~n~l---~~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~l~ 417 (461)
.+.|..|++++|.+....... ..+ -++|+.|+++++.- ..-+.-...++++|..|||++|. ++......|-+++
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 348999999999876433221 221 36899999998632 22233334579999999999975 4443445677889
Q ss_pred cCCeeecccccccccCCccC---CCCCCCCEEEccCCC
Q 037538 418 VLSRLLMEENRFEGSIPPSL---GNCKKLQVLNLSSNN 452 (461)
Q Consensus 418 ~L~~L~l~~n~l~~~~p~~l---~~l~~L~~L~ls~N~ 452 (461)
.|+.|.++.|-. .+|..+ ...++|.+||+-|+-
T Consensus 339 ~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 339 YLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 999999988854 467654 567889999988763
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.18 E-value=2.2e-07 Score=73.57 Aligned_cols=133 Identities=22% Similarity=0.248 Sum_probs=97.1
Q ss_pred CCCEEEccCCcCccccchHHHhcc--ccccEEEccCCcCcccCchhhh-cCCCCCeeecccCcCccccchhhhcCCCCCe
Q 037538 321 SLEVLGLAQNGFGGEMPISIANLS--THLRILTMGYNLMHGNIPVGIE-NLVNLSLLGLEGNNLSGSVPEVIGRLNKLEG 397 (461)
Q Consensus 321 ~L~~L~L~~n~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~ 397 (461)
.+..++|+.+.+. .++.....+. .+|+..++++|.+.. .|..|. .++..+.++|++|.+. .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 4667778877664 4444443332 267788999999984 555554 4568999999999998 78888999999999
Q ss_pred eccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCC
Q 037538 398 LELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 398 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
|+++.|.+. ..|..+..+.++..|+..+|.+. .+|-.+---+..-..++.++++.|.-|
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 999999998 67888888999999999999887 555544333333445567777766544
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.05 E-value=1.5e-05 Score=76.42 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=78.9
Q ss_pred CCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhh
Q 037538 286 FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI 365 (461)
Q Consensus 286 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 365 (461)
+..+.+++.|++++|.+...+ . --++|++|.++++.--..+|..+ +++|++|++++|.....+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP----~------LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP--- 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP----V------LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLP--- 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC----C------CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccc---
Confidence 445688999999998776532 1 12469999998854434566544 3489999999884322454
Q ss_pred hcCCCCCeeecccCcCc--cccchhhhcCCCCCeecccccc-Ccc-cCChhhhcCccCCeeecccccccccCCccCCCCC
Q 037538 366 ENLVNLSLLGLEGNNLS--GSVPEVIGRLNKLEGLELNANK-FSG-FMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCK 441 (461)
Q Consensus 366 ~~l~~L~~L~Ls~n~l~--~~~~~~l~~~~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 441 (461)
++|+.|+++.+... +.+|. +|+.|.+.+++ ... .+|.. -.++|+.|++++|... ..|..+. .
T Consensus 112 ---~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~ 177 (426)
T PRK15386 112 ---ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--E 177 (426)
T ss_pred ---cccceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--c
Confidence 35777777765543 23333 34555554322 110 01111 1146777777777655 3444443 4
Q ss_pred CCCEEEccCC
Q 037538 442 KLQVLNLSSN 451 (461)
Q Consensus 442 ~L~~L~ls~N 451 (461)
+|+.|+++.|
T Consensus 178 SLk~L~ls~n 187 (426)
T PRK15386 178 SLQSITLHIE 187 (426)
T ss_pred cCcEEEeccc
Confidence 6777777665
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=3.2e-06 Score=54.09 Aligned_cols=36 Identities=36% Similarity=0.605 Sum_probs=15.9
Q ss_pred cCCeeecccccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 418 VLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 418 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
+|++|++++|+|+ .+|..+.++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23334444555555555555444
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=2.1e-05 Score=50.31 Aligned_cols=36 Identities=36% Similarity=0.608 Sum_probs=16.9
Q ss_pred CCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCC
Q 037538 103 NLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139 (461)
Q Consensus 103 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 139 (461)
+|++|++++|+|+ .+|..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555554 34444555555555555555444
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=0.00014 Score=69.88 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=53.2
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCC
Q 037538 122 IGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQ 201 (461)
Q Consensus 122 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (461)
+..+.+++.|++++|.++ .+|. + -.+|+.|.+++|.-...+|+.+. ++|++|++++|.....+|. .|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 556789999999999887 6662 2 24699999988755456676553 5899999998832224553 466
Q ss_pred EEECccCCC
Q 037538 202 VLLLARNNL 210 (461)
Q Consensus 202 ~L~l~~n~~ 210 (461)
.|++..+..
T Consensus 116 ~L~L~~n~~ 124 (426)
T PRK15386 116 SLEIKGSAT 124 (426)
T ss_pred eEEeCCCCC
Confidence 777765543
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.65 E-value=1.5e-06 Score=81.34 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=38.1
Q ss_pred CCCCEEecCCCCCccc--CchhccCCCCCCEEeCCCCCC-CCCCCcCC-CCCCCCCEEEccCC-cCCCcCchh-hcCCCC
Q 037538 102 TNLTGINLFQNRFHGQ--IPEEIGRLQKLQDLNLTYNYL-SGKIPTNL-SHCTELRSFEASAN-DFIGQIPDQ-LISLTK 175 (461)
Q Consensus 102 ~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~Ls~n~l-~~~~p~~~-~~l~~L~~L~l~~n-~~~~~~~~~-l~~l~~ 175 (461)
..|+.|.++++.-.+. +-..-..++++++|.+.+|.. ++..-..+ ..+++|+++++..| .++...-+. ..++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3566667766643221 222234566677776666642 11111111 24566666666553 222222221 223555
Q ss_pred CcEEEccCC
Q 037538 176 LEIIRLGTS 184 (461)
Q Consensus 176 L~~L~l~~n 184 (461)
|++++++.+
T Consensus 218 L~~lNlSwc 226 (483)
T KOG4341|consen 218 LKYLNLSWC 226 (483)
T ss_pred HHHhhhccC
Confidence 555555544
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.64 E-value=0.00011 Score=62.47 Aligned_cols=83 Identities=23% Similarity=0.247 Sum_probs=38.8
Q ss_pred CCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccC-CccCCCCCCCCEEEC
Q 037538 127 KLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNI-PAWVGNFSSLQVLLL 205 (461)
Q Consensus 127 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l 205 (461)
....+||++|.+. .+ ..|..++.|.+|.+++|+++..-|.--.-+++|+.|.+.+|++.... -..+..+|+|++|.+
T Consensus 43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3344555555443 11 22444455555555555555443333333455555555555544210 122444556666666
Q ss_pred ccCCCc
Q 037538 206 ARNNLH 211 (461)
Q Consensus 206 ~~n~~~ 211 (461)
-+|..+
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 555554
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=3.9e-05 Score=79.71 Aligned_cols=59 Identities=29% Similarity=0.327 Sum_probs=25.9
Q ss_pred cCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcc-cCChhhhcCccCCeeecccc
Q 037538 367 NLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSG-FMPSSLGNLTVLSRLLMEEN 427 (461)
Q Consensus 367 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n 427 (461)
++|+|..||+|+.+++.. ..++++++|+.|.+.+=.+.. ..-..+.++++|+.||+|..
T Consensus 171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 344555555555444422 334444555555444443331 11223344455555555443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.45 E-value=6.5e-05 Score=78.12 Aligned_cols=145 Identities=18% Similarity=0.205 Sum_probs=67.0
Q ss_pred CCCcEEEccCCCCc-ccCCccCC-CCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccC
Q 037538 174 TKLEIIRLGTSNLT-GNIPAWVG-NFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGV 251 (461)
Q Consensus 174 ~~L~~L~l~~n~l~-~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~ 251 (461)
.+|++|++++...- ..-|..++ -+|+|+.|.+.+-.+...- +..++..+|+|..||+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-------------------F~~lc~sFpNL~sLDIS~ 182 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-------------------FSQLCASFPNLRSLDISG 182 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-------------------HHHHhhccCccceeecCC
Confidence 56788888774422 11122232 3577777777765553211 122233455555555555
Q ss_pred ccCccccChhhcCCCCCCEEEcccccccc-cCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCC
Q 037538 252 NYFTGSIPVSLSNASNLQVLDFAENGLTG-TIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQN 330 (461)
Q Consensus 252 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n 330 (461)
.+++.. ..++.+++|+.|.+.+=.+.. ..-..+..+++|+.||+|.........-...+.+.-..+|+|+.||.|+.
T Consensus 183 TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 183 TNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred CCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 544422 345555555555555444332 11123445556666666554443321000011112223556666666655
Q ss_pred cCccccchH
Q 037538 331 GFGGEMPIS 339 (461)
Q Consensus 331 ~~~~~~~~~ 339 (461)
.+.+.+-+.
T Consensus 261 di~~~~le~ 269 (699)
T KOG3665|consen 261 DINEEILEE 269 (699)
T ss_pred chhHHHHHH
Confidence 555444333
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.40 E-value=0.00043 Score=59.00 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=22.9
Q ss_pred hcCCCCCCEEEcccccccccCC---ccCCCCCCCCEEEcccCc
Q 037538 262 LSNASNLQVLDFAENGLTGTIP---ENFGSLKDLVRLNFDQNE 301 (461)
Q Consensus 262 l~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~ 301 (461)
+..++.|++|.+-+|..+..-- ..+..+|+|+.|++++-.
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 4455666666666666543211 234566777777776543
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.14 E-value=0.00029 Score=62.49 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=26.0
Q ss_pred CCCCCCEEEccCC--cCCCcCchhhcCCCCCcEEEccCCCCcccCCcc---CCCCCCCCEEECccCCCc
Q 037538 148 HCTELRSFEASAN--DFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAW---VGNFSSLQVLLLARNNLH 211 (461)
Q Consensus 148 ~l~~L~~L~l~~n--~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~n~~~ 211 (461)
.+++|+.|.++.| +.++.++-....+++|+++++++|++.. +.. +..+.+|..|++.+|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 3444444444444 3333333333333455555555554431 111 223344455555555443
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.03 E-value=6.6e-05 Score=70.65 Aligned_cols=274 Identities=16% Similarity=0.158 Sum_probs=158.3
Q ss_pred CCCcEEEccCCCCcc--cCCccCCCCCCCCEEECccCCCc-ccCChhh-hcCCCCcEEecCCC-Cc-----hhhccCCCC
Q 037538 174 TKLEIIRLGTSNLTG--NIPAWVGNFSSLQVLLLARNNLH-GSIPNEL-GQLSALGFFTLYEN-FI-----SDVGLTLPN 243 (461)
Q Consensus 174 ~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l-~~l~~L~~L~l~~n-~l-----~~~~~~l~~ 243 (461)
..|+.|.+.++.-.+ .+-....+++++++|.+.++... ......+ ..+++|+++++..+ .+ ..+...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357778887765332 12233456788888888877632 2222222 34567777777663 22 234456777
Q ss_pred CcEEEccCcc-Cccc-cChhhcCCCCCCEEEccccccccc--CCccCCCCCCCCEEEcccC-cCcccCCCCchhhhhhcC
Q 037538 244 LKIFAGGVNY-FTGS-IPVSLSNASNLQVLDFAENGLTGT--IPENFGSLKDLVRLNFDQN-ELGSREIGDLNFLKFLAN 318 (461)
Q Consensus 244 L~~L~l~~n~-~~~~-~~~~l~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~ 318 (461)
|++++++.+. +++. +-.....++.++.+.+.+|.=.+. +-..-..+..+.++++..+ .+++. .....-..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~-----~~~~i~~~ 292 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE-----DLWLIACG 292 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch-----HHHHHhhh
Confidence 7777777663 3331 112233445555555554311000 0011133445566665554 23332 23334456
Q ss_pred CCCCCEEEccCCcCc-cccchHHHhccccccEEEccCCcCcccCch-hh-hcCCCCCeeecccCcCc--cccchhhhcCC
Q 037538 319 CTSLEVLGLAQNGFG-GEMPISIANLSTHLRILTMGYNLMHGNIPV-GI-ENLVNLSLLGLEGNNLS--GSVPEVIGRLN 393 (461)
Q Consensus 319 ~~~L~~L~L~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~~-~~l~~L~~L~Ls~n~l~--~~~~~~l~~~~ 393 (461)
+..|+.++.+++... ...-..+.....+|+.+.+..|+--+.... .+ .+++.|+.+++.++... +++...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 778888888876543 233334555556899999998873222211 11 35678899999887653 22333335789
Q ss_pred CCCeeccccccCc-ccC----ChhhhcCccCCeeecccccc-cccCCccCCCCCCCCEEEccCCC
Q 037538 394 KLEGLELNANKFS-GFM----PSSLGNLTVLSRLLMEENRF-EGSIPPSLGNCKKLQVLNLSSNN 452 (461)
Q Consensus 394 ~L~~L~L~~n~l~-~~~----~~~~~~l~~L~~L~l~~n~l-~~~~p~~l~~l~~L~~L~ls~N~ 452 (461)
.|+.+.+++|... +.. ...-..+..|+.+.+++++. +...-+.+..++.|+.+++-+++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 9999999998753 221 11223457889999999874 44555677888899999888876
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=6.3e-05 Score=67.07 Aligned_cols=98 Identities=23% Similarity=0.211 Sum_probs=60.5
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccC-ChhhhcCccCCeeec
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFM-PSSLGNLTVLSRLLM 424 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l 424 (461)
+.+.|++.+|.+.++ .....++.|++|.||-|.++.. ..+..|++|+.|+|..|.|...- -+-+.++++|+.|+|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 456667777766532 2345677777777777777633 23567777777777777775221 124566777777777
Q ss_pred ccccccccCCcc-----CCCCCCCCEEE
Q 037538 425 EENRFEGSIPPS-----LGNCKKLQVLN 447 (461)
Q Consensus 425 ~~n~l~~~~p~~-----l~~l~~L~~L~ 447 (461)
..|+..|..+.. +.-+++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 777776655432 23355555554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.00041 Score=61.59 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=59.7
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCC--CCCCCCCcCCCCCCCCCEEEccCCcCCC-cCchhhcCCCC
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYN--YLSGKIPTNLSHCTELRSFEASANDFIG-QIPDQLISLTK 175 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~ 175 (461)
..+..|+.+++.+..++ . -..+-.+++|++|.++.| ++.+.++.....+++|+++++++|++.. .--..+..+.+
T Consensus 40 d~~~~le~ls~~n~glt-t-~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLT-T-LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhcccee-e-cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 34455555555554443 1 122445667777777777 5555555555566777777777777642 01112455666
Q ss_pred CcEEEccCCCCcccCC---ccCCCCCCCCEEECcc
Q 037538 176 LEIIRLGTSNLTGNIP---AWVGNFSSLQVLLLAR 207 (461)
Q Consensus 176 L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~ 207 (461)
|..|++.+|..+.... ..+.-+++|++|+-..
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 7778887776653111 1133356666665443
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.90 E-value=0.0053 Score=49.73 Aligned_cols=106 Identities=17% Similarity=0.198 Sum_probs=47.4
Q ss_pred cccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCC
Q 037538 97 SIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKL 176 (461)
Q Consensus 97 ~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 176 (461)
++.++++|+.+.+.. .+...-...|..+++|+.+.+..+ +...-...+.++++++.+.+.+ .+.......+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455566666666654 344333445666666777776654 4423334556666677776654 3322223345556777
Q ss_pred cEEEccCCCCcccCCccCCCCCCCCEEECcc
Q 037538 177 EIIRLGTSNLTGNIPAWVGNFSSLQVLLLAR 207 (461)
Q Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (461)
+.+++..+ +...-...+.+. +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 77776553 332233445555 666666654
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.78 E-value=0.00058 Score=69.11 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=12.6
Q ss_pred hhhcCCCCCeeccccccCc
Q 037538 388 VIGRLNKLEGLELNANKFS 406 (461)
Q Consensus 388 ~l~~~~~L~~L~L~~n~l~ 406 (461)
....++.++.+.+..+..+
T Consensus 357 ~~~~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCGIS 375 (482)
T ss_pred HHhcCCCcchhhhhhhhcc
Confidence 3456777777777777643
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.66 E-value=0.0027 Score=51.47 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=14.6
Q ss_pred cCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccC
Q 037538 285 NFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQ 329 (461)
Q Consensus 285 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 329 (461)
.|..+++|+.+.+.. .+... -...+.++++++.+++.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I------~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKI------GENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-------TTTTTT-TT-SEEEESS
T ss_pred HHhCCCCCCEEEECC-CeeEe------Chhhcccccccccccccc
Confidence 455556666666653 23321 122344555555555544
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.20 E-value=0.0017 Score=65.66 Aligned_cols=32 Identities=16% Similarity=0.007 Sum_probs=18.7
Q ss_pred hhhcCCCCCeeecccCcCcccc-chhhhcCCCC
Q 037538 364 GIENLVNLSLLGLEGNNLSGSV-PEVIGRLNKL 395 (461)
Q Consensus 364 ~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~~~~L 395 (461)
.+..++.++.+.+..+...... ...+.+++.|
T Consensus 357 ~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 4567788888888887743222 2334445544
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.09 E-value=6.3e-05 Score=74.82 Aligned_cols=87 Identities=21% Similarity=0.151 Sum_probs=44.3
Q ss_pred CcEEEccCccCccccC----hhhcCCCCCCEEEcccccccccCCc----cCCCC-CCCCEEEcccCcCcccCCCCchhhh
Q 037538 244 LKIFAGGVNYFTGSIP----VSLSNASNLQVLDFAENGLTGTIPE----NFGSL-KDLVRLNFDQNELGSREIGDLNFLK 314 (461)
Q Consensus 244 L~~L~l~~n~~~~~~~----~~l~~~~~L~~L~l~~n~l~~~~~~----~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~ 314 (461)
+..+.+.+|.+..... ..+.....|+.|++++|.+.+.... .+... +.++.|++..|.++..... .+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~--~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA--PLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH--HHHH
Confidence 4555566665543322 2334456666666666666533111 12222 3455555655555543332 4445
Q ss_pred hhcCCCCCCEEEccCCcC
Q 037538 315 FLANCTSLEVLGLAQNGF 332 (461)
Q Consensus 315 ~l~~~~~L~~L~L~~n~~ 332 (461)
.+.....++.++++.|.+
T Consensus 167 ~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHhcccchhHHHHHhccc
Confidence 555556666666666655
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.0021 Score=57.70 Aligned_cols=97 Identities=23% Similarity=0.241 Sum_probs=55.8
Q ss_pred CCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccc--hhhhcCCCCCee
Q 037538 321 SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVP--EVIGRLNKLEGL 398 (461)
Q Consensus 321 ~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~--~~l~~~~~L~~L 398 (461)
+.+.|++.++.+++ + .+..-.+.|++|.|+-|+++..- .+..|++|+.|+|..|.+.. +. ..+.++++|+.|
T Consensus 20 ~vkKLNcwg~~L~D-I--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD-I--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCCccH-H--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhH
Confidence 44555555555542 1 12222236666666666666433 35667777777777777763 22 235577777777
Q ss_pred ccccccCcccCCh-----hhhcCccCCeee
Q 037538 399 ELNANKFSGFMPS-----SLGNLTVLSRLL 423 (461)
Q Consensus 399 ~L~~n~l~~~~~~-----~~~~l~~L~~L~ 423 (461)
.|..|.-.|..+. .+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777776655543 244456666654
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.43 E-value=0.0068 Score=32.15 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=8.5
Q ss_pred CCeeecccccccccCCccC
Q 037538 419 LSRLLMEENRFEGSIPPSL 437 (461)
Q Consensus 419 L~~L~l~~n~l~~~~p~~l 437 (461)
|+.|++++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555554 444443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.29 E-value=0.00031 Score=69.93 Aligned_cols=182 Identities=24% Similarity=0.237 Sum_probs=103.1
Q ss_pred CcEEecCCCCchhh--------ccCCCCCcEEEccCccCccccCh----hhcCC-CCCCEEEccccccccc----CCccC
Q 037538 224 LGFFTLYENFISDV--------GLTLPNLKIFAGGVNYFTGSIPV----SLSNA-SNLQVLDFAENGLTGT----IPENF 286 (461)
Q Consensus 224 L~~L~l~~n~l~~~--------~~~l~~L~~L~l~~n~~~~~~~~----~l~~~-~~L~~L~l~~n~l~~~----~~~~~ 286 (461)
+..+.+.+|.+..- ....+.|+.++++.|.+.+.--. .+... ..++.|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66677777776332 24567788888888887743222 22222 4567777877777644 34455
Q ss_pred CCCCCCCEEEcccCcCcccCCCCchhhhhhc----CCCCCCEEEccCCcCccccch----HHHhccccccEEEccCCcCc
Q 037538 287 GSLKDLVRLNFDQNELGSREIGDLNFLKFLA----NCTSLEVLGLAQNGFGGEMPI----SIANLSTHLRILTMGYNLMH 358 (461)
Q Consensus 287 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~----~~~~L~~L~L~~n~~~~~~~~----~~~~~~~~L~~L~l~~n~l~ 358 (461)
.....++.++++.|.+.... ....+..+. ...++++|++.++.++..... .+......+.++++..|++.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g--~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELG--LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred hcccchhHHHHHhcccchhh--hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 66778888888888775321 113333343 366777888887776632211 12222222555666666655
Q ss_pred cc----CchhhhcC-CCCCeeecccCcCccc----cchhhhcCCCCCeeccccccCcc
Q 037538 359 GN----IPVGIENL-VNLSLLGLEGNNLSGS----VPEVIGRLNKLEGLELNANKFSG 407 (461)
Q Consensus 359 ~~----~p~~~~~l-~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~ 407 (461)
+. ....+..+ ..+++++++.|.++.. +...+..++.++.+.+++|.+.+
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 32 11223333 4556666776666543 23334455666666666666653
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.92 E-value=0.012 Score=31.18 Aligned_cols=12 Identities=58% Similarity=0.894 Sum_probs=5.2
Q ss_pred CCeeecccCcCc
Q 037538 371 LSLLGLEGNNLS 382 (461)
Q Consensus 371 L~~L~Ls~n~l~ 382 (461)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.46 E-value=0.00071 Score=58.97 Aligned_cols=85 Identities=24% Similarity=0.315 Sum_probs=68.8
Q ss_pred CCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEE
Q 037538 77 NGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFE 156 (461)
Q Consensus 77 ~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 156 (461)
..+|+.||++.+.+. .....+..++.+.+|+++.|.+. -.|..+.+...++.+++..|+.+ ..|.+++..+++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 368999999988876 33445667788888999988886 68888888888888888888877 7888888889999888
Q ss_pred ccCCcCCC
Q 037538 157 ASANDFIG 164 (461)
Q Consensus 157 l~~n~~~~ 164 (461)
+-.+.+..
T Consensus 118 ~k~~~~~~ 125 (326)
T KOG0473|consen 118 QKKTEFFR 125 (326)
T ss_pred hccCcchH
Confidence 88887653
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.67 E-value=0.038 Score=27.13 Aligned_cols=13 Identities=46% Similarity=0.723 Sum_probs=6.0
Q ss_pred CCCEEEccCCCCc
Q 037538 442 KLQVLNLSSNNLN 454 (461)
Q Consensus 442 ~L~~L~ls~N~l~ 454 (461)
+|+.|++++|++.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666654
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.29 E-value=0.0044 Score=54.20 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=41.2
Q ss_pred hcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCE
Q 037538 366 ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQV 445 (461)
Q Consensus 366 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 445 (461)
......+.||++.|++. .....+.-+..+..|+++.|.+. ..|+.+.+...++.+++..|..+ ..|.++...++++.
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 33444555555555443 22223334444555555555544 44555555555555555555444 44555555555555
Q ss_pred EEccCCCC
Q 037538 446 LNLSSNNL 453 (461)
Q Consensus 446 L~ls~N~l 453 (461)
++.-+|+|
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 55555544
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.10 E-value=0.22 Score=27.40 Aligned_cols=17 Identities=41% Similarity=0.753 Sum_probs=9.0
Q ss_pred CCCCEEEccCCCCcccCC
Q 037538 441 KKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 441 ~~L~~L~ls~N~l~~~ip 458 (461)
++|+.|++++|.+. +||
T Consensus 2 ~~L~~L~L~~N~l~-~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLS-SLP 18 (26)
T ss_pred CCCCEEECCCCcCC-cCC
Confidence 34555555555554 444
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.10 E-value=0.22 Score=27.40 Aligned_cols=17 Identities=41% Similarity=0.753 Sum_probs=9.0
Q ss_pred CCCCEEEccCCCCcccCC
Q 037538 441 KKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 441 ~~L~~L~ls~N~l~~~ip 458 (461)
++|+.|++++|.+. +||
T Consensus 2 ~~L~~L~L~~N~l~-~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLS-SLP 18 (26)
T ss_pred CCCCEEECCCCcCC-cCC
Confidence 34555555555554 444
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.95 E-value=0.25 Score=42.66 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=14.1
Q ss_pred CCCCeeecccC-cCccccchhhhcCCCCCeecccc
Q 037538 369 VNLSLLGLEGN-NLSGSVPEVIGRLNKLEGLELNA 402 (461)
Q Consensus 369 ~~L~~L~Ls~n-~l~~~~~~~l~~~~~L~~L~L~~ 402 (461)
++|+.|++++| +++..--.++..+++|+.|.+++
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 34444444443 23333333344444444444443
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.60 E-value=0.36 Score=25.93 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=6.1
Q ss_pred CCCCEEEccCCcCcc
Q 037538 320 TSLEVLGLAQNGFGG 334 (461)
Q Consensus 320 ~~L~~L~L~~n~~~~ 334 (461)
++|++|++++|.+++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344455555554443
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.01 E-value=0.21 Score=43.05 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=21.1
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCCEEECccCC
Q 037538 175 KLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNN 209 (461)
Q Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (461)
.++.++-++..+....-..+.++++++.|.+.+|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 45666666666665555555566666666666554
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=82.87 E-value=5.6 Score=39.09 Aligned_cols=68 Identities=21% Similarity=0.165 Sum_probs=35.5
Q ss_pred CCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCC---CCCCCEEECccCCCcccCChhhh
Q 037538 150 TELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGN---FSSLQVLLLARNNLHGSIPNELG 219 (461)
Q Consensus 150 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~---l~~L~~L~l~~n~~~~~~~~~l~ 219 (461)
+.+++++++.|.+....|-.+..-.. -+.++.|..+..+...+.. -..+.+++++.|.....+|..+.
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n 235 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLN 235 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHH
Confidence 45677777777766555544432111 0445555544332221111 12567777777777666665543
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.34 E-value=1.4 Score=24.28 Aligned_cols=17 Identities=41% Similarity=0.755 Sum_probs=10.4
Q ss_pred CCCEEEccCCCCcccCCC
Q 037538 442 KLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 442 ~L~~L~ls~N~l~~~ip~ 459 (461)
+|+.|++++|+++ ++|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4666666666665 5553
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.30 E-value=6 Score=21.84 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=9.3
Q ss_pred CCCCEEEccCCCCc
Q 037538 441 KKLQVLNLSSNNLN 454 (461)
Q Consensus 441 ~~L~~L~ls~N~l~ 454 (461)
++|+.|++++|+|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45677777777664
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.76 E-value=5.7 Score=22.22 Aligned_cols=14 Identities=43% Similarity=0.605 Sum_probs=10.3
Q ss_pred CCCCEEEccCCCCc
Q 037538 441 KKLQVLNLSSNNLN 454 (461)
Q Consensus 441 ~~L~~L~ls~N~l~ 454 (461)
++|+.|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777888888774
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.41 E-value=5.7 Score=39.85 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=17.9
Q ss_pred CCCCCEEEccccccccc--CCccCCCCCCCCEEEcccC
Q 037538 265 ASNLQVLDFAENGLTGT--IPENFGSLKDLVRLNFDQN 300 (461)
Q Consensus 265 ~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n 300 (461)
.+.+..+.+++|++... +...-...|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 35556666666665422 1111223455666666665
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=46.22 E-value=45 Score=33.13 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=31.6
Q ss_pred CCCCEEEccCCcCccccchHHHhcc--ccccEEEccCCcCcc---cCchhhhcCCCCCeeecccCcC
Q 037538 320 TSLEVLGLAQNGFGGEMPISIANLS--THLRILTMGYNLMHG---NIPVGIENLVNLSLLGLEGNNL 381 (461)
Q Consensus 320 ~~L~~L~L~~n~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~---~~p~~~~~l~~L~~L~Ls~n~l 381 (461)
..+++++++.|.....+|..+.... ..++.++.+...++- .-+...+.-+.++..+++.|..
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 3567777777776666665443221 134455554444321 1122223345666666766644
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=45.19 E-value=16 Score=19.87 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=10.4
Q ss_pred CCCCCEEEccCCC
Q 037538 440 CKKLQVLNLSSNN 452 (461)
Q Consensus 440 l~~L~~L~ls~N~ 452 (461)
+++|+.|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4678888888886
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.02 E-value=11 Score=37.83 Aligned_cols=62 Identities=21% Similarity=0.173 Sum_probs=27.4
Q ss_pred CCCCcEEEccCCCCccc--CCccCCCCCCCCEEECccCCCcccCChhhhcC--CCCcEEecCCCCc
Q 037538 173 LTKLEIIRLGTSNLTGN--IPAWVGNFSSLQVLLLARNNLHGSIPNELGQL--SALGFFTLYENFI 234 (461)
Q Consensus 173 l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~n~l 234 (461)
.+.+..+.|++|++... +-.--...|+|++|+|++|...-....++.+. ..|++|-+.+|.+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcc
Confidence 45555566666655411 00111123566666666662211111233322 2345555555555
Done!