Query 037538
Match_columns 461
No_of_seqs 331 out of 4271
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 22:59:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.3E-56 7.9E-61 474.2 34.4 424 31-460 7-533 (768)
2 4eco_A Uncharacterized protein 100.0 1.9E-53 6.6E-58 442.1 29.2 412 33-460 27-584 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 1.5E-51 5E-56 435.6 29.6 414 30-461 263-825 (876)
4 3rgz_A Protein brassinosteroid 100.0 5.3E-51 1.8E-55 433.1 28.5 376 78-460 269-723 (768)
5 3t6q_A CD180 antigen; protein- 100.0 1.3E-44 4.3E-49 375.2 34.8 381 78-460 33-519 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-44 4.4E-49 375.1 27.8 144 78-221 32-176 (606)
7 4eco_A Uncharacterized protein 100.0 9E-45 3.1E-49 377.0 24.3 346 94-454 198-600 (636)
8 3t6q_A CD180 antigen; protein- 100.0 1.7E-43 5.9E-48 366.7 32.2 373 78-459 57-541 (606)
9 3v47_A TOLL-like receptor 5B a 100.0 1.4E-43 4.8E-48 354.5 25.6 369 78-459 30-413 (455)
10 1ziw_A TOLL-like receptor 3; i 100.0 3.7E-42 1.3E-46 361.4 35.2 378 78-455 25-518 (680)
11 2z63_A TOLL-like receptor 4, v 100.0 8.2E-43 2.8E-47 358.9 28.5 373 78-459 28-536 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 3.5E-43 1.2E-47 360.1 25.2 366 78-458 26-514 (549)
13 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-42 1.5E-46 356.1 32.6 371 78-458 56-562 (606)
14 4ecn_A Leucine-rich repeat pro 100.0 2.6E-42 8.8E-47 365.1 25.1 346 94-455 440-841 (876)
15 3j0a_A TOLL-like receptor 5; m 100.0 8.1E-42 2.8E-46 366.2 28.5 380 66-454 14-517 (844)
16 1ogq_A PGIP-2, polygalacturona 100.0 3.8E-42 1.3E-46 326.5 21.0 293 32-380 2-302 (313)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-40 3.8E-45 339.2 28.8 361 78-457 21-484 (520)
18 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-39 6.2E-44 340.9 37.0 158 78-235 73-285 (680)
19 3j0a_A TOLL-like receptor 5; m 100.0 2.7E-40 9.3E-45 354.4 29.5 374 78-460 48-545 (844)
20 4g8a_A TOLL-like receptor 4; l 100.0 2.7E-39 9.2E-44 336.8 31.1 372 78-455 52-581 (635)
21 2z63_A TOLL-like receptor 4, v 100.0 3.1E-39 1E-43 332.3 30.1 369 84-459 13-512 (570)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.2E-39 7.4E-44 332.6 25.4 362 78-458 52-514 (562)
23 3v47_A TOLL-like receptor 5B a 100.0 2.5E-38 8.6E-43 316.5 28.9 331 102-459 30-388 (455)
24 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-38 4.9E-43 323.6 27.1 362 81-460 3-462 (520)
25 2z81_A CD282 antigen, TOLL-lik 100.0 3E-38 1E-42 323.5 29.0 376 65-459 3-491 (549)
26 1o6v_A Internalin A; bacterial 100.0 1.1E-37 3.9E-42 312.4 30.7 342 78-455 46-389 (466)
27 2id5_A Lingo-1, leucine rich r 100.0 4.3E-37 1.5E-41 309.3 26.9 316 87-432 20-335 (477)
28 3o6n_A APL1; leucine-rich repe 100.0 1E-36 3.4E-41 298.6 27.9 349 56-431 3-353 (390)
29 1jl5_A Outer protein YOPM; leu 100.0 2E-37 6.8E-42 308.4 21.2 343 78-461 11-418 (454)
30 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.5E-37 1.5E-41 315.4 24.4 357 81-460 34-491 (562)
31 3bz5_A Internalin-J, INLJ; leu 100.0 8.5E-37 2.9E-41 304.1 25.4 334 78-461 42-394 (457)
32 3oja_B Anopheles plasmodium-re 100.0 3.6E-36 1.2E-40 310.5 29.8 352 51-432 4-360 (597)
33 4g8a_A TOLL-like receptor 4; l 100.0 7.5E-36 2.5E-40 310.8 30.9 366 93-461 45-562 (635)
34 2id5_A Lingo-1, leucine rich r 100.0 7.9E-36 2.7E-40 300.2 29.6 314 68-408 13-335 (477)
35 1o6v_A Internalin A; bacterial 100.0 6.3E-35 2.1E-39 292.5 29.5 326 99-458 43-370 (466)
36 4fmz_A Internalin; leucine ric 100.0 2E-34 6.9E-39 277.7 28.5 305 100-454 42-346 (347)
37 3o6n_A APL1; leucine-rich repe 100.0 4.7E-34 1.6E-38 279.6 27.0 310 78-408 45-354 (390)
38 3bz5_A Internalin-J, INLJ; leu 100.0 2.5E-34 8.5E-39 286.4 25.2 304 93-430 33-352 (457)
39 3oja_B Anopheles plasmodium-re 100.0 1E-33 3.5E-38 292.2 29.3 311 78-409 51-361 (597)
40 4fmz_A Internalin; leucine ric 100.0 5.1E-33 1.7E-37 267.9 30.1 303 78-430 44-346 (347)
41 1jl5_A Outer protein YOPM; leu 100.0 2.2E-33 7.4E-38 279.4 28.1 325 79-460 92-435 (454)
42 1z7x_W Ribonuclease inhibitor; 100.0 2.4E-36 8.1E-41 302.6 4.5 376 78-455 3-441 (461)
43 4fcg_A Uncharacterized protein 100.0 2.8E-34 9.5E-39 274.0 13.1 272 29-356 20-312 (328)
44 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-33 4.2E-38 268.0 16.6 252 150-455 50-306 (313)
45 1xku_A Decorin; proteoglycan, 100.0 4.5E-32 1.5E-36 259.4 27.5 289 103-452 32-330 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-35 5.4E-40 296.6 1.7 352 102-456 3-413 (461)
47 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-32 6.7E-37 262.2 22.9 288 103-452 34-331 (332)
48 1xku_A Decorin; proteoglycan, 100.0 3.6E-31 1.2E-35 253.2 29.3 286 82-428 35-330 (330)
49 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-31 3.8E-36 256.9 25.0 287 80-428 35-331 (332)
50 2z80_A TOLL-like receptor 2, v 100.0 9.8E-30 3.4E-34 245.5 19.1 286 58-409 22-317 (353)
51 2z80_A TOLL-like receptor 2, v 100.0 2.7E-29 9.3E-34 242.4 19.0 254 151-432 53-316 (353)
52 2z66_A Variable lymphocyte rec 100.0 4E-29 1.4E-33 236.3 17.8 288 63-391 4-296 (306)
53 3ogk_B Coronatine-insensitive 100.0 2E-31 6.9E-36 275.2 -0.4 372 79-456 113-528 (592)
54 4fcg_A Uncharacterized protein 100.0 9.7E-29 3.3E-33 235.6 17.7 232 127-429 82-313 (328)
55 2z66_A Variable lymphocyte rec 100.0 3.2E-28 1.1E-32 230.1 21.0 248 105-383 10-262 (306)
56 1ozn_A Reticulon 4 receptor; N 100.0 2.7E-27 9.1E-32 221.4 24.1 226 81-335 14-240 (285)
57 1ozn_A Reticulon 4 receptor; N 100.0 2.1E-27 7.3E-32 222.1 21.7 225 105-383 14-239 (285)
58 3ogk_B Coronatine-insensitive 100.0 6.1E-30 2.1E-34 264.2 3.7 371 78-456 73-503 (592)
59 3g06_A SSPH2 (leucine-rich rep 100.0 1.7E-27 5.8E-32 244.2 21.4 287 56-389 12-304 (622)
60 3zyi_A Leucine-rich repeat-con 100.0 1.8E-26 6.3E-31 230.1 25.5 233 93-333 68-303 (452)
61 1wwl_A Monocyte differentiatio 99.9 4.6E-29 1.6E-33 236.5 5.1 268 57-359 22-310 (312)
62 3g06_A SSPH2 (leucine-rich rep 99.9 4.1E-26 1.4E-30 233.9 27.1 269 102-417 40-308 (622)
63 3zyj_A Leucine-rich repeat-con 99.9 3.1E-26 1.1E-30 227.6 24.9 233 93-333 57-292 (440)
64 3zyi_A Leucine-rich repeat-con 99.9 2.1E-26 7.2E-31 229.6 23.7 246 152-453 56-302 (452)
65 1wwl_A Monocyte differentiatio 99.9 1.6E-28 5.6E-33 232.7 5.6 256 123-455 40-310 (312)
66 3o53_A Protein LRIM1, AGAP0063 99.9 2.9E-28 9.8E-33 231.5 6.6 267 128-435 12-281 (317)
67 3zyj_A Leucine-rich repeat-con 99.9 5.3E-26 1.8E-30 225.9 23.1 236 68-305 45-294 (440)
68 3o53_A Protein LRIM1, AGAP0063 99.9 3.7E-28 1.3E-32 230.7 6.5 267 80-411 12-281 (317)
69 2p1m_B Transport inhibitor res 99.9 5.9E-29 2E-33 256.9 -0.9 369 78-454 105-519 (594)
70 2o6q_A Variable lymphocyte rec 99.9 4.9E-25 1.7E-29 204.3 22.9 218 63-304 2-219 (270)
71 3oja_A Leucine-rich immune mol 99.9 1.7E-26 5.7E-31 231.9 10.7 148 243-401 121-270 (487)
72 3oja_A Leucine-rich immune mol 99.9 5.6E-26 1.9E-30 228.1 11.8 234 175-425 35-270 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 1.1E-24 3.6E-29 202.7 19.3 208 243-458 29-241 (276)
74 2p1m_B Transport inhibitor res 99.9 3.1E-27 1.1E-31 244.0 1.9 370 78-455 66-495 (594)
75 3goz_A Leucine-rich repeat-con 99.9 1.4E-25 4.7E-30 217.1 10.1 146 266-413 138-304 (362)
76 2z62_A TOLL-like receptor 4, v 99.9 3.3E-23 1.1E-27 192.6 21.8 214 93-335 21-239 (276)
77 3goz_A Leucine-rich repeat-con 99.9 5E-25 1.7E-29 213.1 9.8 264 155-435 3-302 (362)
78 2o6q_A Variable lymphocyte rec 99.9 2.5E-23 8.4E-28 192.8 20.3 203 244-456 18-220 (270)
79 2ast_B S-phase kinase-associat 99.9 1E-25 3.5E-30 215.8 3.8 237 64-330 35-282 (336)
80 2ca6_A RAN GTPase-activating p 99.9 4.8E-25 1.6E-29 215.3 7.3 248 190-457 24-319 (386)
81 3rfs_A Internalin B, repeat mo 99.9 1.4E-23 4.9E-28 194.6 16.6 208 99-343 38-245 (272)
82 3rfs_A Internalin B, repeat mo 99.9 5.3E-24 1.8E-28 197.5 13.5 223 202-442 23-247 (272)
83 2ca6_A RAN GTPase-activating p 99.9 3.4E-25 1.2E-29 216.4 3.8 173 258-433 114-319 (386)
84 2ast_B S-phase kinase-associat 99.9 4.3E-24 1.5E-28 204.5 10.7 250 175-438 48-314 (336)
85 1p9a_G Platelet glycoprotein I 99.9 9.3E-23 3.2E-27 190.7 18.2 178 266-454 31-208 (290)
86 3m19_A Variable lymphocyte rec 99.9 2.4E-22 8.2E-27 184.0 19.0 191 64-304 3-193 (251)
87 4glp_A Monocyte differentiatio 99.9 4.7E-23 1.6E-27 194.9 12.6 202 241-455 90-308 (310)
88 1p9a_G Platelet glycoprotein I 99.9 9.4E-22 3.2E-26 183.9 20.3 201 99-332 7-207 (290)
89 4glp_A Monocyte differentiatio 99.9 1.6E-22 5.6E-27 191.2 12.7 199 102-303 64-285 (310)
90 3m19_A Variable lymphocyte rec 99.9 1.4E-21 4.7E-26 179.0 17.1 179 244-456 16-194 (251)
91 2xwt_C Thyrotropin receptor; s 99.9 1.6E-21 5.6E-26 177.1 15.6 197 102-330 31-236 (239)
92 2o6s_A Variable lymphocyte rec 99.9 3.6E-21 1.2E-25 171.0 17.0 183 63-263 4-186 (208)
93 2xwt_C Thyrotropin receptor; s 99.9 1.2E-21 4.1E-26 178.0 13.9 198 242-452 31-237 (239)
94 1h6u_A Internalin H; cell adhe 99.9 3.2E-21 1.1E-25 182.0 16.2 193 218-431 37-231 (308)
95 1h6u_A Internalin H; cell adhe 99.9 1E-20 3.6E-25 178.4 17.3 192 100-333 39-230 (308)
96 3cvr_A Invasion plasmid antige 99.8 8.5E-21 2.9E-25 192.2 14.5 201 59-285 36-249 (571)
97 2o6s_A Variable lymphocyte rec 99.8 3.1E-20 1.1E-24 164.9 13.3 173 266-456 28-200 (208)
98 3cvr_A Invasion plasmid antige 99.8 4.2E-19 1.4E-23 179.9 19.7 187 103-343 60-253 (571)
99 3e6j_A Variable lymphocyte rec 99.8 4.5E-19 1.5E-23 159.7 17.9 163 57-235 10-172 (229)
100 4ay9_X Follicle-stimulating ho 99.8 2.6E-19 8.9E-24 172.1 16.8 165 252-428 90-257 (350)
101 4ay9_X Follicle-stimulating ho 99.8 2.9E-19 1E-23 171.7 14.6 245 64-354 7-255 (350)
102 2v9t_B SLIT homolog 2 protein 99.8 2.9E-18 1E-22 153.3 17.5 158 63-235 8-165 (220)
103 1h6t_A Internalin B; cell adhe 99.8 1.4E-18 4.7E-23 162.5 14.3 183 228-431 30-214 (291)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-18 6.9E-23 154.4 14.4 154 269-455 14-167 (220)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-17 3.6E-22 149.7 17.1 151 82-235 15-166 (220)
106 2v9t_B SLIT homolog 2 protein 99.8 2.6E-18 8.7E-23 153.7 13.0 152 269-430 14-165 (220)
107 4b8c_D Glucose-repressible alc 99.8 9.3E-20 3.2E-24 191.1 3.1 257 33-303 129-404 (727)
108 1h6t_A Internalin B; cell adhe 99.8 4.2E-18 1.4E-22 159.2 13.9 184 204-408 30-215 (291)
109 1m9s_A Internalin B; cell inva 99.8 5.2E-18 1.8E-22 173.6 14.8 186 201-407 24-211 (605)
110 2xot_A Amphoterin-induced prot 99.8 6.5E-18 2.2E-22 163.0 14.6 133 103-235 40-176 (361)
111 3e6j_A Variable lymphocyte rec 99.8 7.8E-18 2.7E-22 151.6 14.0 152 268-430 21-172 (229)
112 1m9s_A Internalin B; cell inva 99.8 3.4E-18 1.2E-22 175.0 13.0 172 99-304 40-211 (605)
113 4ezg_A Putative uncharacterize 99.7 5.7E-18 1.9E-22 148.8 11.5 154 263-455 41-195 (197)
114 4ezg_A Putative uncharacterize 99.7 5.5E-18 1.9E-22 148.9 11.2 152 240-405 42-193 (197)
115 2xot_A Amphoterin-induced prot 99.7 1.6E-17 5.5E-22 160.3 13.9 175 225-406 21-202 (361)
116 1dce_A Protein (RAB geranylger 99.7 1.5E-20 5E-25 191.4 -10.7 184 241-432 348-548 (567)
117 1w8a_A SLIT protein; signaling 99.7 3.6E-17 1.2E-21 143.0 10.9 132 323-458 11-143 (192)
118 1xeu_A Internalin C; cellular 99.7 2.4E-17 8.3E-22 151.6 10.1 169 100-303 17-185 (263)
119 1xeu_A Internalin C; cellular 99.7 2.4E-17 8.2E-22 151.6 8.8 169 242-432 19-187 (263)
120 1dce_A Protein (RAB geranylger 99.7 2E-19 6.8E-24 183.0 -7.0 209 195-424 346-567 (567)
121 2ell_A Acidic leucine-rich nuc 99.7 7.2E-17 2.5E-21 137.9 10.0 138 319-460 23-165 (168)
122 4b8c_D Glucose-repressible alc 99.7 1.9E-17 6.7E-22 173.5 5.9 225 198-456 173-406 (727)
123 1w8a_A SLIT protein; signaling 99.7 6.7E-16 2.3E-20 134.9 13.5 131 82-215 12-143 (192)
124 2je0_A Acidic leucine-rich nuc 99.7 2.9E-16 9.9E-21 131.3 10.3 128 101-230 16-148 (149)
125 2ell_A Acidic leucine-rich nuc 99.7 4.4E-16 1.5E-20 133.0 11.0 135 100-236 22-161 (168)
126 2o6r_A Variable lymphocyte rec 99.6 8.4E-16 2.9E-20 132.4 11.1 133 322-458 9-141 (177)
127 2o6r_A Variable lymphocyte rec 99.6 3.4E-15 1.2E-19 128.6 14.8 138 63-215 4-141 (177)
128 3sb4_A Hypothetical leucine ri 99.6 1.4E-16 4.7E-21 151.7 6.5 292 101-448 24-328 (329)
129 2wfh_A SLIT homolog 2 protein 99.6 1.3E-15 4.3E-20 133.2 11.9 127 323-454 13-139 (193)
130 2je0_A Acidic leucine-rich nuc 99.6 2.1E-16 7.2E-21 132.1 6.5 128 320-450 17-149 (149)
131 3sb4_A Hypothetical leucine ri 99.6 6.7E-16 2.3E-20 146.9 8.4 210 241-459 100-314 (329)
132 2wfh_A SLIT homolog 2 protein 99.6 1E-14 3.4E-19 127.4 14.6 126 82-211 14-139 (193)
133 1a9n_A U2A', U2A'; complex (nu 99.5 6.9E-15 2.3E-19 126.6 7.6 104 346-453 43-152 (176)
134 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-14 6.6E-19 123.7 9.8 134 97-236 14-154 (176)
135 1ds9_A Outer arm dynein; leuci 99.5 2.9E-16 9.9E-21 138.0 -2.2 161 262-454 14-185 (198)
136 4fdw_A Leucine rich hypothetic 99.5 2.9E-12 9.8E-17 124.7 23.2 268 126-452 113-381 (401)
137 1ds9_A Outer arm dynein; leuci 99.5 5.8E-16 2E-20 136.1 -3.2 152 241-430 17-185 (198)
138 4fs7_A Uncharacterized protein 99.5 4.6E-12 1.6E-16 123.4 22.8 327 95-446 64-393 (394)
139 3g39_A Variable lymphocyte rec 99.5 1.5E-13 5.3E-18 117.2 9.9 106 322-431 11-116 (170)
140 4fs7_A Uncharacterized protein 99.4 1.8E-11 6.1E-16 119.3 24.3 321 78-422 71-393 (394)
141 2r9u_A Variable lymphocyte rec 99.4 4.6E-13 1.6E-17 114.7 10.3 104 323-430 15-118 (174)
142 4fdw_A Leucine rich hypothetic 99.4 1.3E-11 4.4E-16 120.1 21.6 263 101-382 112-383 (401)
143 3g39_A Variable lymphocyte rec 99.4 1.2E-12 4.2E-17 111.6 12.8 85 127-211 31-115 (170)
144 3un9_A NLR family member X1; l 99.4 3.4E-14 1.2E-18 137.0 3.1 186 265-455 71-284 (372)
145 2r9u_A Variable lymphocyte rec 99.4 2.3E-12 7.8E-17 110.3 12.8 85 127-211 34-118 (174)
146 3un9_A NLR family member X1; l 99.4 1.6E-14 5.5E-19 139.2 -0.9 188 241-431 71-284 (372)
147 2ifg_A High affinity nerve gro 99.2 2.4E-11 8.4E-16 116.2 10.0 102 350-454 13-116 (347)
148 4gt6_A Cell surface protein; l 99.2 2.4E-09 8.1E-14 104.2 22.6 318 96-454 57-391 (394)
149 2ifg_A High affinity nerve gro 99.2 1.1E-10 3.9E-15 111.5 11.5 107 66-187 8-116 (347)
150 4gt6_A Cell surface protein; l 99.1 8.8E-09 3E-13 100.1 22.4 321 80-429 66-390 (394)
151 2ra8_A Uncharacterized protein 98.9 1.7E-09 5.7E-14 103.3 9.1 190 217-428 134-341 (362)
152 2ra8_A Uncharacterized protein 98.9 2.1E-09 7.2E-14 102.6 9.1 213 174-404 107-341 (362)
153 4h09_A Hypothetical leucine ri 98.9 3.8E-07 1.3E-11 88.0 23.4 314 99-441 43-356 (379)
154 4h09_A Hypothetical leucine ri 98.7 3.4E-06 1.2E-10 81.3 25.0 312 78-419 46-358 (379)
155 1io0_A Tropomodulin; LRR prote 98.7 2E-08 7E-13 86.5 5.7 47 285-333 31-78 (185)
156 3rw6_A Nuclear RNA export fact 98.6 9.6E-10 3.3E-14 99.7 -3.4 81 147-229 167-258 (267)
157 1io0_A Tropomodulin; LRR prote 98.6 2.2E-08 7.5E-13 86.3 5.1 62 368-429 92-163 (185)
158 3rw6_A Nuclear RNA export fact 98.4 6.4E-08 2.2E-12 87.7 2.9 80 366-447 167-257 (267)
159 3e4g_A ATP synthase subunit S, 98.3 1.5E-07 5.1E-12 79.2 2.1 83 346-428 62-150 (176)
160 3e4g_A ATP synthase subunit S, 98.1 4.8E-06 1.6E-10 70.0 6.1 85 290-380 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 4.7E-05 1.6E-09 65.2 4.6 21 313-333 63-83 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 7.9E-05 2.7E-09 63.8 4.5 91 262-354 37-135 (197)
163 3rfe_A Platelet glycoprotein I 96.5 0.0025 8.7E-08 50.7 4.9 57 372-430 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.0041 1.4E-07 49.4 5.0 57 348-406 11-68 (130)
165 2lz0_A Uncharacterized protein 47.5 23 0.00079 25.9 4.3 46 380-426 7-52 (100)
166 2lz0_A Uncharacterized protein 37.7 93 0.0032 22.5 6.3 13 97-109 15-27 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-56 Score=474.22 Aligned_cols=424 Identities=30% Similarity=0.462 Sum_probs=283.3
Q ss_pred ccCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcceeeEEecCCCCcEEEEEcCCCCcccc---cC------------
Q 037538 31 SATIEADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGS---IP------------ 95 (461)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~---~~------------ 95 (461)
+++.++|++||++||+++. ||. .+++|..+++||.|.||+|+ .++|++|+++++.+.|. ++
T Consensus 7 ~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l 82 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred ccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence 3457889999999999997 777 88999988899999999998 48999999999988776 33
Q ss_pred -----------ccccCCCCCCEEecCCCCCcccCch--hccCCCCCCEEeCCCCCCCCCCCcCC-CCCCCCCEEEccCCc
Q 037538 96 -----------ASIGNLTNLTGINLFQNRFHGQIPE--EIGRLQKLQDLNLTYNYLSGKIPTNL-SHCTELRSFEASAND 161 (461)
Q Consensus 96 -----------~~l~~l~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~ 161 (461)
..+..+++|++|+|++|.+.|.+|. .++.+++|++|++++|.+.+.+|..+ .++++|++|++++|.
T Consensus 83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 5678889999999999999988888 89999999999999999887777765 778888888888887
Q ss_pred CCCcCchh---h----------------------cCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCCh
Q 037538 162 FIGQIPDQ---L----------------------ISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPN 216 (461)
Q Consensus 162 ~~~~~~~~---l----------------------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 216 (461)
+++..|.. + .++++|++|++++|.+.+.+|. ++++++|++|++++|.+++.+|.
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH
Confidence 77655544 3 3456666666777777665665 77778888888888888777777
Q ss_pred hhhcCCCCcEEecCCCCchhhc--cCCCCCcEEEccCccCccccChhhcCC-CCCCEEEcccccccccCCccCC------
Q 037538 217 ELGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNA-SNLQVLDFAENGLTGTIPENFG------ 287 (461)
Q Consensus 217 ~l~~l~~L~~L~l~~n~l~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~------ 287 (461)
.+..+++|++|++++|.+.... ..+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 321 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred HHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCcc
Confidence 7888888888888777663211 123444455555544444444444332 4444444444444444444444
Q ss_pred -------------------CCCCCCEEEcccCcCcccCCCCch-------------------hhhhhcC--CCCCCEEEc
Q 037538 288 -------------------SLKDLVRLNFDQNELGSREIGDLN-------------------FLKFLAN--CTSLEVLGL 327 (461)
Q Consensus 288 -------------------~l~~L~~L~L~~n~l~~~~~~~~~-------------------~~~~l~~--~~~L~~L~L 327 (461)
.+++|++|++++|++.+..+..+. .+..+.. +++|++|++
T Consensus 322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp EEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred EEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence 444444555544444432111100 0011111 334555555
Q ss_pred cCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcc
Q 037538 328 AQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSG 407 (461)
Q Consensus 328 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 407 (461)
++|.+++.+|..+..++ +|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++
T Consensus 402 ~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp CSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence 55555555555555544 56666666666665566666666666666666666666666666666666666666666666
Q ss_pred cCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCCCC
Q 037538 408 FMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKE 460 (461)
Q Consensus 408 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~~ 460 (461)
.+|..+.++++|+.|++++|++++.+|.++..+++|+.|++++|++.|.+|.+
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 533 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH
Confidence 66666666666666666666666666666666666666666666666666643
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-53 Score=442.11 Aligned_cols=412 Identities=23% Similarity=0.343 Sum_probs=344.8
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCCC-------CCCCCCCCCcce---eeEEecCCCCcEEEEEcCCCCcccccCccccCCC
Q 037538 33 TIEADKLALLDFKNHLTQDPLQIM-------SSWNDSVHFCNW---VGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLT 102 (461)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~-------~~w~~~~~~c~w---~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~ 102 (461)
....|+.||.+++.++.++.|... .+|+.+.++|.| .||+|+.. ++|++|+|+++++.|.+|+++++++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 345799999999999876666533 389999999999 99999865 8999999999999999999999999
Q ss_pred CCCEEecCCCCC--------------------------------------------------------------------
Q 037538 103 NLTGINLFQNRF-------------------------------------------------------------------- 114 (461)
Q Consensus 103 ~L~~L~L~~n~~-------------------------------------------------------------------- 114 (461)
+|++|+|++|.+
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 999999998843
Q ss_pred ----------cccCchhccCCCCCCEEeCCCCCCCCC-----------------CCcCCC--CCCCCCEEEccCCcCCCc
Q 037538 115 ----------HGQIPEEIGRLQKLQDLNLTYNYLSGK-----------------IPTNLS--HCTELRSFEASANDFIGQ 165 (461)
Q Consensus 115 ----------~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~~~~~ 165 (461)
++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 34 788899999999999999999975 999999 999999999999999999
Q ss_pred CchhhcCCCCCcEEEccCCC-Ccc-cCCccCCCC------CCCCEEECccCCCcccCCh--hhhcCCCCcEEecCCCCch
Q 037538 166 IPDQLISLTKLEIIRLGTSN-LTG-NIPAWVGNF------SSLQVLLLARNNLHGSIPN--ELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 166 ~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~l~ 235 (461)
+|+.++++++|++|++++|+ +++ .+|..++++ ++|++|++++|.++ .+|. .++.+++|++|++++|.+.
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc
Confidence 99999999999999999998 988 788887776 89999999999999 8888 8999999999999999887
Q ss_pred -hhc--cCCCCCcEEEccCccCccccChhhcCCCC-CCEEEcccccccccCCccCCCCC--CCCEEEcccCcCcccCCCC
Q 037538 236 -DVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASN-LQVLDFAENGLTGTIPENFGSLK--DLVRLNFDQNELGSREIGD 309 (461)
Q Consensus 236 -~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~ 309 (461)
.+. ..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+ +|+.|++++|++.+.
T Consensus 344 g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~---- 417 (636)
T 4eco_A 344 GKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSV---- 417 (636)
T ss_dssp EECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTT----
T ss_pred cchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCc----
Confidence 443 23567899999999988 78888888888 999999999988 6777776654 899999999988873
Q ss_pred chhhhhhc-------CCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhc-C-------CCCCee
Q 037538 310 LNFLKFLA-------NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIEN-L-------VNLSLL 374 (461)
Q Consensus 310 ~~~~~~l~-------~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~-l-------~~L~~L 374 (461)
.+..+. .+++|+.|++++|.++ .+|..+....++|++|++++|.++ .+|..+.. . ++|+.|
T Consensus 418 --~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L 493 (636)
T 4eco_A 418 --DGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSI 493 (636)
T ss_dssp --TTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEE
T ss_pred --chhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEE
Confidence 333444 6678888888888888 566665543238888888888887 45543322 2 278888
Q ss_pred ecccCcCccccchhhh--cCCCCCeeccccccCcccCChhhhcCccCCeeec------ccccccccCCccCCCCCCCCEE
Q 037538 375 GLEGNNLSGSVPEVIG--RLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLM------EENRFEGSIPPSLGNCKKLQVL 446 (461)
Q Consensus 375 ~Ls~n~l~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l------~~n~l~~~~p~~l~~l~~L~~L 446 (461)
++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+.++++|+.|
T Consensus 494 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 494 DLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp ECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 88888888 6777776 78888888888888886 7888888888888888 4577788888888888888888
Q ss_pred EccCCCCcccCCCC
Q 037538 447 NLSSNNLNGTIPKE 460 (461)
Q Consensus 447 ~ls~N~l~~~ip~~ 460 (461)
++++|++ +.||..
T Consensus 572 ~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 572 QIGSNDI-RKVNEK 584 (636)
T ss_dssp ECCSSCC-CBCCSC
T ss_pred ECCCCcC-CccCHh
Confidence 8888888 688865
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-51 Score=435.60 Aligned_cols=414 Identities=23% Similarity=0.332 Sum_probs=343.7
Q ss_pred cccCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCC-----CC--cce------------eeEEecCCCCcEEEEEcCCCCc
Q 037538 30 ESATIEADKLALLDFKNHLTQDPLQIMSSWNDSV-----HF--CNW------------VGVTCSPSNGRVTVLKLESKQL 90 (461)
Q Consensus 30 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~l~~~~l 90 (461)
.+++..+|+.||++||+++. +| +|.... ++ |.| .||+|+. .++|+.|+|+++++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA 335 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC
T ss_pred ccccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC
Confidence 34456789999999999996 44 565433 45 999 9999986 48999999999999
Q ss_pred ccccCccccCCCCCCEEec-CCCCCccc----------------------------------------------------
Q 037538 91 VGSIPASIGNLTNLTGINL-FQNRFHGQ---------------------------------------------------- 117 (461)
Q Consensus 91 ~~~~~~~l~~l~~L~~L~L-~~n~~~~~---------------------------------------------------- 117 (461)
.|.+|++++++++|++|+| ++|.+.|.
T Consensus 336 ~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~ 415 (876)
T 4ecn_A 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415 (876)
T ss_dssp EEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred CCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence 9999999999999999999 77654433
Q ss_pred ------------------------CchhccCCCCCCEEeCCCCCCCC-----------------CCCcCCC--CCCCCCE
Q 037538 118 ------------------------IPEEIGRLQKLQDLNLTYNYLSG-----------------KIPTNLS--HCTELRS 154 (461)
Q Consensus 118 ------------------------~~~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~~~--~l~~L~~ 154 (461)
+|..|.++++|++|+|++|.+++ .+|..++ ++++|++
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred ccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 78889999999999999999997 3899988 9999999
Q ss_pred EEccCCcCCCcCchhhcCCCCCcEEEccCCC-Ccc-cCCccCCC-------CCCCCEEECccCCCcccCCh--hhhcCCC
Q 037538 155 FEASANDFIGQIPDQLISLTKLEIIRLGTSN-LTG-NIPAWVGN-------FSSLQVLLLARNNLHGSIPN--ELGQLSA 223 (461)
Q Consensus 155 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~-------l~~L~~L~l~~n~~~~~~~~--~l~~l~~ 223 (461)
|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+++ +++|++|++++|.++ .+|. .++.+++
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 9999999999999999999999999999998 887 77875554 459999999999999 8888 8999999
Q ss_pred CcEEecCCCCchhhc--cCCCCCcEEEccCccCccccChhhcCCCC-CCEEEcccccccccCCccCCCCCC--CCEEEcc
Q 037538 224 LGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASN-LQVLDFAENGLTGTIPENFGSLKD--LVRLNFD 298 (461)
Q Consensus 224 L~~L~l~~n~l~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~L~ 298 (461)
|+.|++++|.+..+. ..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++. |+.|+++
T Consensus 575 L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 575 LGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp CCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECC
T ss_pred CCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECc
Confidence 999999999987554 44678999999999999 88988999999 999999999998 77888777654 9999999
Q ss_pred cCcCcccCCCCchhhhhhc--CCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhc--------C
Q 037538 299 QNELGSREIGDLNFLKFLA--NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIEN--------L 368 (461)
Q Consensus 299 ~n~l~~~~~~~~~~~~~l~--~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~--------l 368 (461)
+|++.+..+. ++..+. .+++|+.|++++|.++ .+|..+....++|+.|++++|.++ .+|..+.. +
T Consensus 653 ~N~l~g~ip~---l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 653 YNKIGSEGRN---ISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNT 727 (876)
T ss_dssp SSCTTTTSSS---CSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTG
T ss_pred CCcCCCcccc---chhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccccccc
Confidence 9999874221 111222 3457888888888888 677766533348888888888887 55554433 2
Q ss_pred CCCCeeecccCcCccccchhhh--cCCCCCeeccccccCcccCChhhhcCccCCeeeccc------ccccccCCccCCCC
Q 037538 369 VNLSLLGLEGNNLSGSVPEVIG--RLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEE------NRFEGSIPPSLGNC 440 (461)
Q Consensus 369 ~~L~~L~Ls~n~l~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~p~~l~~l 440 (461)
++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++++ |++.+.+|..+.++
T Consensus 728 ~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 38888888888888 7777776 88888888888888886 788888888888888865 77888888888888
Q ss_pred CCCCEEEccCCCCcccCCCCC
Q 037538 441 KKLQVLNLSSNNLNGTIPKEV 461 (461)
Q Consensus 441 ~~L~~L~ls~N~l~~~ip~~~ 461 (461)
++|+.|++++|++ +.||..+
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp SSCCEEECCSSCC-CBCCSCC
T ss_pred CCCCEEECCCCCC-CccCHhh
Confidence 8888888888888 7888753
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.3e-51 Score=433.10 Aligned_cols=376 Identities=31% Similarity=0.496 Sum_probs=317.6
Q ss_pred CcEEEEEcCCCCcccccCccccCC-CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcC-CCCCCCCCEE
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNL-TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTN-LSHCTELRSF 155 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l-~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L 155 (461)
..+++|++++|.+.+.+|..+... ++|++|++++|.+++.+|..|..+++|++|++++|.+++.+|.. +..+++|++|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 456667777777766777666654 77777777777777777777777777888888777777677765 7777788888
Q ss_pred EccCCcCCCcCchhhcCCC-CCcEEEccCCCCcccCCccCCC--CCCCCEEECccCCCcccCChhhhcCCCCcEEecCCC
Q 037538 156 EASANDFIGQIPDQLISLT-KLEIIRLGTSNLTGNIPAWVGN--FSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYEN 232 (461)
Q Consensus 156 ~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 232 (461)
++++|.+++.+|..+.+++ +|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus 349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence 8888777777777777776 7888888888777777777666 678888888888888888888888999999999888
Q ss_pred Cchh----hccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCC
Q 037538 233 FISD----VGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIG 308 (461)
Q Consensus 233 ~l~~----~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 308 (461)
.+.. ....+++|+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++.+
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~---- 504 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG---- 504 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS----
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC----
Confidence 7742 33457889999999999988888888889999999999999988888888899999999999998887
Q ss_pred CchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhh----------------------
Q 037538 309 DLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIE---------------------- 366 (461)
Q Consensus 309 ~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~---------------------- 366 (461)
.++.++..+++|++|++++|++++.+|..+..++ +|++|++++|.++|.+|..+.
T Consensus 505 --~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (768)
T 3rgz_A 505 --EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581 (768)
T ss_dssp --CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred --cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccc
Confidence 5677788889999999999999988998888886 899999999988877776543
Q ss_pred ------------------------------------------------cCCCCCeeecccCcCccccchhhhcCCCCCee
Q 037538 367 ------------------------------------------------NLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGL 398 (461)
Q Consensus 367 ------------------------------------------------~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L 398 (461)
.+++|+.||+++|+++|.+|..++.+++|+.|
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 661 (768)
T 3rgz_A 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661 (768)
T ss_dssp SCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEE
T ss_pred cccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEE
Confidence 34678999999999999999999999999999
Q ss_pred ccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCCCC
Q 037538 399 ELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKE 460 (461)
Q Consensus 399 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~~ 460 (461)
+|++|+++|.+|..++++++|+.||+++|+++|.+|..+.++++|+.||+++|+++|.||+.
T Consensus 662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999963
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-44 Score=375.17 Aligned_cols=381 Identities=19% Similarity=0.144 Sum_probs=275.6
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
..+++|++++|.+++..+.++.++++|++|++++|.+.+..|.+|..+++|++|++++|.+++..|..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 57999999999999888889999999999999999999888999999999999999999999888999999999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCc--EEecCCCCch
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALG--FFTLYENFIS 235 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~--~L~l~~n~l~ 235 (461)
++|.+++..+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999877677899999999999999999874434455589999999999999877777788888877 6777766552
Q ss_pred hh------------------------------------------------------------------------------
Q 037538 236 DV------------------------------------------------------------------------------ 237 (461)
Q Consensus 236 ~~------------------------------------------------------------------------------ 237 (461)
.+
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 21
Q ss_pred -ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCC-c-----
Q 037538 238 -GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGD-L----- 310 (461)
Q Consensus 238 -~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~----- 310 (461)
...+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..... +
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 112344555555555554 34445555555555555555555444444444444444444444433211000 0
Q ss_pred -------------h--hhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCch-hhhcCCCCCee
Q 037538 311 -------------N--FLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPV-GIENLVNLSLL 374 (461)
Q Consensus 311 -------------~--~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L 374 (461)
. .+..+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..+. .+..+++|+.|
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP-QLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT-TCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc-cCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 0 023455566666666666666655555555554 677777777776655443 36667777777
Q ss_pred ecccCcCccccchhhhcCCCCCeeccccccCccc---CChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCC
Q 037538 375 GLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGF---MPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSN 451 (461)
Q Consensus 375 ~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N 451 (461)
++++|.+.+..|..+..+++|++|++++|++++. .+..+..+++|+.|++++|++++..|..+..+++|+.|++++|
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 7777777776777777778888888888887752 2356777888888888888888777888888888888888888
Q ss_pred CCcccCCCC
Q 037538 452 NLNGTIPKE 460 (461)
Q Consensus 452 ~l~~~ip~~ 460 (461)
++++.+|+.
T Consensus 511 ~l~~~~~~~ 519 (606)
T 3t6q_A 511 RLTSSSIEA 519 (606)
T ss_dssp CCCGGGGGG
T ss_pred ccCcCChhH
Confidence 888766643
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-44 Score=375.15 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=127.4
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|++++|.+.+..+..+.++++|++|++++|.+++..|.+|..+++|++|++++|.+++..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 67999999999998888888999999999999999999878888999999999999999999777999999999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcc-cCCccCCCCCCCCEEECccCCCcccCChhhhcC
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTG-NIPAWVGNFSSLQVLLLARNNLHGSIPNELGQL 221 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l 221 (461)
++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 176 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHH
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhh
Confidence 9999987777889999999999999999886 578889999999999999998887666544433
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9e-45 Score=376.99 Aligned_cols=346 Identities=20% Similarity=0.296 Sum_probs=312.8
Q ss_pred cCccccCCCCCCEEecCCCCCccc-----------------Cchhcc--CCCCCCEEeCCCCCCCCCCCcCCCCCCCCCE
Q 037538 94 IPASIGNLTNLTGINLFQNRFHGQ-----------------IPEEIG--RLQKLQDLNLTYNYLSGKIPTNLSHCTELRS 154 (461)
Q Consensus 94 ~~~~l~~l~~L~~L~L~~n~~~~~-----------------~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 154 (461)
+|..++++++|++|++++|.+++. +|..+. ++++|++|++++|.+.+.+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 788899999999999999999986 999999 9999999999999999999999999999999
Q ss_pred EEccCCc-CCC-cCchhhcCC------CCCcEEEccCCCCcccCCc--cCCCCCCCCEEECccCCCcccCChhhhcCCCC
Q 037538 155 FEASAND-FIG-QIPDQLISL------TKLEIIRLGTSNLTGNIPA--WVGNFSSLQVLLLARNNLHGSIPNELGQLSAL 224 (461)
Q Consensus 155 L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 224 (461)
|++++|+ +++ .+|..++++ ++|++|++++|.++ .+|. .+.++++|++|++++|.+.|.+| .++.+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 9999998 888 899998887 99999999999999 8998 89999999999999999999999 99999999
Q ss_pred cEEecCCCCchhhc---cCCCC-CcEEEccCccCccccChhhcCCC--CCCEEEcccccccccCCccCC-------CCCC
Q 037538 225 GFFTLYENFISDVG---LTLPN-LKIFAGGVNYFTGSIPVSLSNAS--NLQVLDFAENGLTGTIPENFG-------SLKD 291 (461)
Q Consensus 225 ~~L~l~~n~l~~~~---~~l~~-L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~l~~~~~~~~~-------~l~~ 291 (461)
++|++++|.+..+. ..+++ |+.|++++|.++ .+|..+...+ +|++|++++|.+++..|..+. .+++
T Consensus 356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred CEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 99999999887553 34677 999999999999 7888877765 899999999999999999888 8889
Q ss_pred CCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccc-------cccEEEccCCcCcccCchh
Q 037538 292 LVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLST-------HLRILTMGYNLMHGNIPVG 364 (461)
Q Consensus 292 L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~p~~ 364 (461)
|++|++++|+++..+ ...+..+++|+.|++++|.++ .+|........ +|++|++++|.++ .+|..
T Consensus 435 L~~L~Ls~N~l~~lp------~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 435 VSSINLSNNQISKFP------KELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp EEEEECCSSCCCSCC------THHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred CCEEECcCCccCcCC------HHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence 999999999998522 234567899999999999998 77765544322 8999999999999 68888
Q ss_pred hh--cCCCCCeeecccCcCccccchhhhcCCCCCeecc------ccccCcccCChhhhcCccCCeeecccccccccCCcc
Q 037538 365 IE--NLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLEL------NANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPS 436 (461)
Q Consensus 365 ~~--~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (461)
+. .+++|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|+.|++++|++ +.+|..
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 87 99999999999999997 8999999999999999 56788899999999999999999999999 688988
Q ss_pred CCCCCCCCEEEccCCCCc
Q 037538 437 LGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 437 l~~l~~L~~L~ls~N~l~ 454 (461)
+. ++|+.|++++|++.
T Consensus 585 ~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 585 IT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CC--TTCCEEECCSCTTC
T ss_pred Hh--CcCCEEECcCCCCc
Confidence 76 89999999999875
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-43 Score=366.66 Aligned_cols=373 Identities=23% Similarity=0.248 Sum_probs=253.7
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|++++|.+.+..|.++.++++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..++++++|++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 45666666666666666666666666666666666666555666666666666666666665443445555555555555
Q ss_pred cCCcCCC------------------------cCchhhcCCCCCc--EEEccCCCCcccCCcc------------------
Q 037538 158 SANDFIG------------------------QIPDQLISLTKLE--IIRLGTSNLTGNIPAW------------------ 193 (461)
Q Consensus 158 ~~n~~~~------------------------~~~~~l~~l~~L~--~L~l~~n~l~~~~~~~------------------ 193 (461)
++|.+.+ ..+..++.+++|+ .|++++|.+.+..|..
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~ 216 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHH
T ss_pred CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHH
Confidence 5555544 3344444444444 4444444443322211
Q ss_pred ---------------------------------------------------------CCCCCCCCEEECccCCCcccCCh
Q 037538 194 ---------------------------------------------------------VGNFSSLQVLLLARNNLHGSIPN 216 (461)
Q Consensus 194 ---------------------------------------------------------l~~l~~L~~L~l~~n~~~~~~~~ 216 (461)
+.++++|++|++++|.++ .+|.
T Consensus 217 ~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~ 295 (606)
T 3t6q_A 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS 295 (606)
T ss_dssp HHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS
T ss_pred HHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCCh
Confidence 233344444444444444 3444
Q ss_pred hhhcCCCCcEEecCCCCchhh----ccCCCCCcEEEccCccCccccCh-hhcCCCCCCEEEcccccccccC--CccCCCC
Q 037538 217 ELGQLSALGFFTLYENFISDV----GLTLPNLKIFAGGVNYFTGSIPV-SLSNASNLQVLDFAENGLTGTI--PENFGSL 289 (461)
Q Consensus 217 ~l~~l~~L~~L~l~~n~l~~~----~~~l~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~l~~~~--~~~~~~l 289 (461)
.+..+++|++|++++|.+... ...+++|+.|++++|.+.+.+|. .+..+++|++|++++|.+++.. +..+..+
T Consensus 296 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 375 (606)
T 3t6q_A 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375 (606)
T ss_dssp SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence 444445555555555444322 12345555555555555544432 2555566666666666555443 4556666
Q ss_pred CCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchH-HHhccccccEEEccCCcCcccCchhhhcC
Q 037538 290 KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPIS-IANLSTHLRILTMGYNLMHGNIPVGIENL 368 (461)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~l 368 (461)
++|++|++++|++.+ ..+..+..+++|+.|++++|.+++..+.. +..++ +|++|++++|.+.+..|..+..+
T Consensus 376 ~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l 448 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLS------LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH-LLKVLNLSHSLLDISSEQLFDGL 448 (606)
T ss_dssp TTCCEEECCSCSCEE------ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT-TCCEEECTTCCCBTTCTTTTTTC
T ss_pred CCCCEEECCCCcCCc------CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc-cCCEEECCCCccCCcCHHHHhCC
Confidence 666666666666654 34566788999999999999998776554 55665 99999999999999889999999
Q ss_pred CCCCeeecccCcCccc---cchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCE
Q 037538 369 VNLSLLGLEGNNLSGS---VPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQV 445 (461)
Q Consensus 369 ~~L~~L~Ls~n~l~~~---~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 445 (461)
++|++|++++|.+.+. .+..+..+++|++|++++|++++..|..|..+++|+.|++++|++++..|..+.+++.| .
T Consensus 449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~ 527 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-Y 527 (606)
T ss_dssp TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-E
T ss_pred CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-E
Confidence 9999999999999873 33568899999999999999999999999999999999999999999999999999999 9
Q ss_pred EEccCCCCcccCCC
Q 037538 446 LNLSSNNLNGTIPK 459 (461)
Q Consensus 446 L~ls~N~l~~~ip~ 459 (461)
|++++|++++..|.
T Consensus 528 L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 528 LNLASNHISIILPS 541 (606)
T ss_dssp EECCSSCCCCCCGG
T ss_pred EECcCCcccccCHh
Confidence 99999999976664
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-43 Score=354.54 Aligned_cols=369 Identities=18% Similarity=0.184 Sum_probs=253.0
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccC-chhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEE
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQI-PEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFE 156 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 156 (461)
.++++|++++|.+.+..+..+.++++|++|++++|.+.+.+ +..|..+++|++|++++|.+++..|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45666666666666655666666666666666666665433 44566666666666666666655566666666666666
Q ss_pred ccCCcCCCcCchh--hcCCCCCcEEEccCCCCcccCCcc-CCCCCCCCEEECccCCCcccCChhhhcC--CCCcEEecCC
Q 037538 157 ASANDFIGQIPDQ--LISLTKLEIIRLGTSNLTGNIPAW-VGNFSSLQVLLLARNNLHGSIPNELGQL--SALGFFTLYE 231 (461)
Q Consensus 157 l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~ 231 (461)
+++|.+++..+.. +.++++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+ .+++.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 6666666544433 666666666666666666555544 5666666666666666666555555544 4555555555
Q ss_pred CCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCC---CCCCCEEEcccCcCcccCCC
Q 037538 232 NFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGS---LKDLVRLNFDQNELGSREIG 308 (461)
Q Consensus 232 n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~ 308 (461)
|.+..+.... +.......+..+++|++|++++|.+++..|..+.. .++|+.|++++|...+....
T Consensus 190 n~l~~~~~~~------------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 257 (455)
T 3v47_A 190 ITLQDMNEYW------------LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257 (455)
T ss_dssp CBCTTCSTTC------------TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred Ccccccchhh------------ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc
Confidence 5554322100 00000011223455666666666555554444322 25566666665544332111
Q ss_pred Cch----hhhhh--cCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCc
Q 037538 309 DLN----FLKFL--ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLS 382 (461)
Q Consensus 309 ~~~----~~~~l--~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 382 (461)
... ....+ ...++|+.|++++|.+++..|..+..++ +|++|++++|.+++..|..+..+++|++|++++|.++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred hhhhccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence 000 00111 1347899999999999988888888876 9999999999999888889999999999999999999
Q ss_pred cccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 383 GSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 383 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
+..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++.+|.
T Consensus 337 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 88888999999999999999999988899999999999999999999976667789999999999999999999883
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.7e-42 Score=361.36 Aligned_cols=378 Identities=22% Similarity=0.224 Sum_probs=254.6
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|++++|.+.+..+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57999999999998877778999999999999999999888889999999999999999998554557999999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhh--cCCCCcEEecCCCCch
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELG--QLSALGFFTLYENFIS 235 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~n~l~ 235 (461)
++|.+.+..|..++++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999877778899999999999999999988888889999999999999999876666554 4578888888887664
Q ss_pred hhcc-------------------------------CCCCCcEEEccCccCccccChhhcCCCC--CCEEEcccccccccC
Q 037538 236 DVGL-------------------------------TLPNLKIFAGGVNYFTGSIPVSLSNASN--LQVLDFAENGLTGTI 282 (461)
Q Consensus 236 ~~~~-------------------------------~l~~L~~L~l~~n~~~~~~~~~l~~~~~--L~~L~l~~n~l~~~~ 282 (461)
.+.. ..++|+.|++++|.+++..|..+..++. |++|++++|.+++..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 3211 1134455555555555444444444322 555555555554444
Q ss_pred CccCCCCCCCCEEEcccCcCcccCCCCc-----------------------hhh----hhhcCCCCCCEEEccCCcCccc
Q 037538 283 PENFGSLKDLVRLNFDQNELGSREIGDL-----------------------NFL----KFLANCTSLEVLGLAQNGFGGE 335 (461)
Q Consensus 283 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------------~~~----~~l~~~~~L~~L~L~~n~~~~~ 335 (461)
+..+..+++|++|++++|++.+.....+ .++ ..+..+++|++|++++|.+++.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 4444555555555555544443221100 001 1344556666666666665544
Q ss_pred cchHHHhcc---------------------------ccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccc-h
Q 037538 336 MPISIANLS---------------------------THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVP-E 387 (461)
Q Consensus 336 ~~~~~~~~~---------------------------~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~ 387 (461)
.+..+..++ ++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+| .
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence 443333322 134455555555665566666677777777777777765544 4
Q ss_pred hhhcCCCCCeeccccccCcc--------------------------cCChhhhcCccCCeeecccccccccCCccCCCCC
Q 037538 388 VIGRLNKLEGLELNANKFSG--------------------------FMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCK 441 (461)
Q Consensus 388 ~l~~~~~L~~L~L~~n~l~~--------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 441 (461)
.+.++++|++|++++|++++ .+|..+..+++|+.|++++|++++..|..+.+++
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 504 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc
Confidence 56666666666666666543 3455555666666666666666655555566666
Q ss_pred CCCEEEccCCCCcc
Q 037538 442 KLQVLNLSSNNLNG 455 (461)
Q Consensus 442 ~L~~L~ls~N~l~~ 455 (461)
+|+.|++++|++.+
T Consensus 505 ~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 505 KLEILDLQHNNLAR 518 (680)
T ss_dssp TCCEEECCSSCCGG
T ss_pred ccCEEeCCCCCccc
Confidence 66666666666653
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.2e-43 Score=358.92 Aligned_cols=373 Identities=18% Similarity=0.174 Sum_probs=269.2
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.+++.|++++|.+.+..+.++.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46778888888887766777788888888888888887666677788888888888888877666677888888888888
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcc-cCCccCCCCCCCCEEECccCCCcccCChhhhcCCCC----cEEecCCC
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTG-NIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSAL----GFFTLYEN 232 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~l~~n 232 (461)
++|.+.+..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+.+..+..++.+.+| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 8887775544457778888888888887775 467777778888888888877766555555555444 44555444
Q ss_pred Cchhh---------------------------------------------------------------------------
Q 037538 233 FISDV--------------------------------------------------------------------------- 237 (461)
Q Consensus 233 ~l~~~--------------------------------------------------------------------------- 237 (461)
.+..+
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 33111
Q ss_pred ----------ccCCCCCcEEEccCccCccccChhh------------------------------------------cCC
Q 037538 238 ----------GLTLPNLKIFAGGVNYFTGSIPVSL------------------------------------------SNA 265 (461)
Q Consensus 238 ----------~~~l~~L~~L~l~~n~~~~~~~~~l------------------------------------------~~~ 265 (461)
...+++|+.+++++|.+++ +|..+ ..+
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccC
Confidence 0112344444444444331 22222 234
Q ss_pred CCCCEEEcccccccccC--CccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccc-hHHHh
Q 037538 266 SNLQVLDFAENGLTGTI--PENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMP-ISIAN 342 (461)
Q Consensus 266 ~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~-~~~~~ 342 (461)
++|++|++++|.+++.. +..+..+++|++|++++|.+.+ .+..+..+++|+.|++++|.+.+..+ ..+..
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-------EEEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-------ccccccccCCCCEEEccCCccccccchhhhhc
Confidence 45555555555544332 3444555556666666555543 22236677888888888888776555 34555
Q ss_pred ccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCc-cccchhhhcCCCCCeeccccccCcccCChhhhcCccCCe
Q 037538 343 LSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLS-GSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSR 421 (461)
Q Consensus 343 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 421 (461)
++ +|++|++++|.+.+..|..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|+.
T Consensus 420 l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 420 LR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp CT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CC-CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 54 8999999999998888888889999999999999987 578888999999999999999999888999999999999
Q ss_pred eecccccccccCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 422 LLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 422 L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
|++++|++++..|..+.++++|+.|++++|++.+..|.
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999988788899999999999999999998874
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.5e-43 Score=360.08 Aligned_cols=366 Identities=20% Similarity=0.219 Sum_probs=249.7
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|++++|.+.+..+.++.++++|++|++++|.+++..|.+|..+++|++|++++|.+++..|..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 47999999999999888889999999999999999999888888999999999999999999776777999999999999
Q ss_pred cCCcCCC-cCchhhcCCCCCcEEEccCCCCcccCC-ccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCch
Q 037538 158 SANDFIG-QIPDQLISLTKLEIIRLGTSNLTGNIP-AWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 158 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 235 (461)
++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.+.+..|..+..+++|++|+++.|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999886 467789999999999999998554555 57889999999999999999888888777666666666555543
Q ss_pred hhc----cCCCCCcEEEccCccCccc------------------------------------------------------
Q 037538 236 DVG----LTLPNLKIFAGGVNYFTGS------------------------------------------------------ 257 (461)
Q Consensus 236 ~~~----~~l~~L~~L~l~~n~~~~~------------------------------------------------------ 257 (461)
.+. ..+++|+.|++++|.+++.
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 221 1244455555544444331
Q ss_pred -----------------------------------------------------------cChhh-cCCCCCCEEEccccc
Q 037538 258 -----------------------------------------------------------IPVSL-SNASNLQVLDFAENG 277 (461)
Q Consensus 258 -----------------------------------------------------------~~~~l-~~~~~L~~L~l~~n~ 277 (461)
+|..+ ..+++|++|++++|.
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~ 345 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc
Confidence 12111 223444444444444
Q ss_pred ccccCC---ccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccC
Q 037538 278 LTGTIP---ENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGY 354 (461)
Q Consensus 278 l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~ 354 (461)
+++..| ..++.+++|++|++++|++++.. .....+..+++|++|++++|+++ .+|..+..++ +|++|++++
T Consensus 346 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~-~L~~L~Ls~ 419 (549)
T 2z81_A 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ----KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE-KMRFLNLSS 419 (549)
T ss_dssp CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHH----HHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT-TCCEEECTT
T ss_pred cccccccchhhhhccccCcEEEccCCcccccc----cchhhhhcCCCCCEEECCCCCCc-cCChhhcccc-cccEEECCC
Confidence 443332 12334444444444444443210 01122444444445555444444 3343333332 445555555
Q ss_pred CcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCC
Q 037538 355 NLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIP 434 (461)
Q Consensus 355 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 434 (461)
|.+++ +|..+ .++|+.|++++|++++. ...+++|++|++++|+++ .+|. ...+++|+.|++++|++++..|
T Consensus 420 N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 420 TGIRV-VKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp SCCSC-CCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred CCccc-ccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence 54442 22211 13455555555555532 246788999999999998 6775 4678999999999999998888
Q ss_pred ccCCCCCCCCEEEccCCCCcccCC
Q 037538 435 PSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 435 ~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
..+..+++|+.|++++|++.+..|
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 491 GIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TGGGGCTTCCEEECCSSCBCCCHH
T ss_pred HHHhcCcccCEEEecCCCccCCCc
Confidence 889999999999999999988765
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.3e-42 Score=356.13 Aligned_cols=371 Identities=19% Similarity=0.182 Sum_probs=280.4
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|++++|.+.+..|.++.++++|++|++++|.+++..|.+|..+++|++|++++|.+++..+..++++++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 67999999999998888888999999999999999998777889999999999999999998766678999999999999
Q ss_pred cCCcCCC-cCchhhcCCCCCcEEEccCCCCcccCCccCCCCC---------------------------CCCEEECccCC
Q 037538 158 SANDFIG-QIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFS---------------------------SLQVLLLARNN 209 (461)
Q Consensus 158 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~---------------------------~L~~L~l~~n~ 209 (461)
++|.+.+ .+|..++++++|++|++++|.+++..+..+..++ +|++|++++|.
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCc
Confidence 9999876 6788999999999999999888765444332222 22222222222
Q ss_pred Ccc-----------------------------------------------------------------------------
Q 037538 210 LHG----------------------------------------------------------------------------- 212 (461)
Q Consensus 210 ~~~----------------------------------------------------------------------------- 212 (461)
+.+
T Consensus 216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 295 (606)
T 3vq2_A 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295 (606)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESC
T ss_pred cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCc
Confidence 110
Q ss_pred ---cCChhhhcCCCCcEEecCCCCchhhc-----------------------cCCCCCcEEEccCccCccc--cChhhcC
Q 037538 213 ---SIPNELGQLSALGFFTLYENFISDVG-----------------------LTLPNLKIFAGGVNYFTGS--IPVSLSN 264 (461)
Q Consensus 213 ---~~~~~l~~l~~L~~L~l~~n~l~~~~-----------------------~~l~~L~~L~l~~n~~~~~--~~~~l~~ 264 (461)
.+| .+..+++|+.|++++|.+..+. ..+++|+.|++++|.+++. +|..+..
T Consensus 296 ~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 374 (606)
T 3vq2_A 296 SIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374 (606)
T ss_dssp CCCCCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHC
T ss_pred cchhhh-hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhcc
Confidence 111 2333344555555555442221 2456777777777777655 3667777
Q ss_pred CCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhh-hhhcCCCCCCEEEccCCcCccccchHHHhc
Q 037538 265 ASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFL-KFLANCTSLEVLGLAQNGFGGEMPISIANL 343 (461)
Q Consensus 265 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~ 343 (461)
+++|++|++++|.+++ +|..+..+++|+.|++++|++.+. .+ ..+..+++|+.|++++|.+++..|..+..+
T Consensus 375 ~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 447 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV------TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447 (606)
T ss_dssp CSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST------TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred CCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCc------cChhhhhccccCCEEECcCCCCCccchhhhcCC
Confidence 7888888888887764 456777788888888888877763 22 456778888888888888887777777777
Q ss_pred cccccEEEccCCcCcc-cCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCee
Q 037538 344 STHLRILTMGYNLMHG-NIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRL 422 (461)
Q Consensus 344 ~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 422 (461)
+ +|++|++++|.+++ .+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|+.|
T Consensus 448 ~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 448 T-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp T-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred C-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEE
Confidence 6 88888888888887 367778888888888888888887778888888888888888888888778888888888888
Q ss_pred ecccccccccCCccCCCCC-CCCEEEccCCCCcccCC
Q 037538 423 LMEENRFEGSIPPSLGNCK-KLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 423 ~l~~n~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~ip 458 (461)
++++|+++ .+|..+..++ +|+.|++++|++.+..|
T Consensus 527 ~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 527 DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 88888888 6777777776 58888888888876544
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.6e-42 Score=365.11 Aligned_cols=346 Identities=19% Similarity=0.240 Sum_probs=305.5
Q ss_pred cCccccCCCCCCEEecCCCCCcc-----------------cCchhcc--CCCCCCEEeCCCCCCCCCCCcCCCCCCCCCE
Q 037538 94 IPASIGNLTNLTGINLFQNRFHG-----------------QIPEEIG--RLQKLQDLNLTYNYLSGKIPTNLSHCTELRS 154 (461)
Q Consensus 94 ~~~~l~~l~~L~~L~L~~n~~~~-----------------~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 154 (461)
+|..+.++++|++|+|++|.+++ .+|..++ .+++|++|++++|.+.+.+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78889999999999999999998 3899887 9999999999999999999999999999999
Q ss_pred EEccCCc-CCC-cCchhhcCCC-------CCcEEEccCCCCcccCCc--cCCCCCCCCEEECccCCCcccCChhhhcCCC
Q 037538 155 FEASAND-FIG-QIPDQLISLT-------KLEIIRLGTSNLTGNIPA--WVGNFSSLQVLLLARNNLHGSIPNELGQLSA 223 (461)
Q Consensus 155 L~l~~n~-~~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 223 (461)
|++++|+ +++ .+|..+++++ +|++|++++|.++ .+|. .+.++++|++|++++|.++ .+| .++.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999998 888 7888777665 9999999999999 8998 8999999999999999999 888 8999999
Q ss_pred CcEEecCCCCchhhc---cCCCC-CcEEEccCccCccccChhhcCCCC--CCEEEcccccccccCCccC---C--CCCCC
Q 037538 224 LGFFTLYENFISDVG---LTLPN-LKIFAGGVNYFTGSIPVSLSNASN--LQVLDFAENGLTGTIPENF---G--SLKDL 292 (461)
Q Consensus 224 L~~L~l~~n~l~~~~---~~l~~-L~~L~l~~n~~~~~~~~~l~~~~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L 292 (461)
|+.|++++|.+..+. ..+++ |+.|++++|.++ .+|..+...+. |++|++++|.+.+.+|... . .+++|
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 999999999987554 34567 999999999998 78888777654 9999999999998766432 2 34589
Q ss_pred CEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccc-------cccEEEccCCcCcccCchhh
Q 037538 293 VRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLST-------HLRILTMGYNLMHGNIPVGI 365 (461)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~p~~~ 365 (461)
+.|++++|+++.. -...+..+++|+.|++++|.++ .+|..+..... +|++|++++|.++ .+|..+
T Consensus 676 ~~L~Ls~N~L~~l------p~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l 747 (876)
T 4ecn_A 676 STVTLSYNEIQKF------PTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDF 747 (876)
T ss_dssp EEEECCSSCCCSC------CHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGG
T ss_pred CEEEccCCcCCcc------CHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHh
Confidence 9999999999842 1233458899999999999998 77776554322 8999999999999 688888
Q ss_pred h--cCCCCCeeecccCcCccccchhhhcCCCCCeecccc------ccCcccCChhhhcCccCCeeecccccccccCCccC
Q 037538 366 E--NLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNA------NKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSL 437 (461)
Q Consensus 366 ~--~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 437 (461)
. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|++++|++ +.+|..+
T Consensus 748 ~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp STTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred hhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh
Confidence 7 89999999999999997 798999999999999976 788899999999999999999999999 6899887
Q ss_pred CCCCCCCEEEccCCCCcc
Q 037538 438 GNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 438 ~~l~~L~~L~ls~N~l~~ 455 (461)
. ++|+.||+++|++..
T Consensus 826 ~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 826 T--PQLYILDIADNPNIS 841 (876)
T ss_dssp C--SSSCEEECCSCTTCE
T ss_pred c--CCCCEEECCCCCCCc
Confidence 6 699999999999863
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.1e-42 Score=366.21 Aligned_cols=380 Identities=19% Similarity=0.166 Sum_probs=259.6
Q ss_pred cceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccC-chhccCCCCCCEEeCCCCCCCCCCCc
Q 037538 66 CNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQI-PEEIGRLQKLQDLNLTYNYLSGKIPT 144 (461)
Q Consensus 66 c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~ 144 (461)
|.|..|.+ ...++++|+|++|.+.+..+..+.++++|++|++++|...+.+ |.+|..+++|++|++++|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 34666655 2368999999999999888889999999999999999666555 77899999999999999999988899
Q ss_pred CCCCCCCCCEEEccCCcCCCcCchh--hcCCCCCcEEEccCCCCcccCC-ccCCCCCCCCEEECccCCCcccCChhhhcC
Q 037538 145 NLSHCTELRSFEASANDFIGQIPDQ--LISLTKLEIIRLGTSNLTGNIP-AWVGNFSSLQVLLLARNNLHGSIPNELGQL 221 (461)
Q Consensus 145 ~~~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l 221 (461)
.|.++++|++|++++|.+++.+|.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999998866665 8899999999999999986654 568899999999999999887777666554
Q ss_pred --CCC------------------------------cEEecCCCCchhh-----c--------------------------
Q 037538 222 --SAL------------------------------GFFTLYENFISDV-----G-------------------------- 238 (461)
Q Consensus 222 --~~L------------------------------~~L~l~~n~l~~~-----~-------------------------- 238 (461)
++| +.|++++|.+... .
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 444 4555554432100 0
Q ss_pred -----------cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCC
Q 037538 239 -----------LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREI 307 (461)
Q Consensus 239 -----------~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 307 (461)
...++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--- 328 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE--- 328 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC---
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc---
Confidence 002456777777777766666667777777777777777777777777777777777777777765
Q ss_pred CCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccC--------------------------
Q 037538 308 GDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNI-------------------------- 361 (461)
Q Consensus 308 ~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-------------------------- 361 (461)
..+..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|.+++..
T Consensus 329 ---~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~ 404 (844)
T 3j0a_A 329 ---LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE-KLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTAN 404 (844)
T ss_dssp ---CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC-CCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCC
T ss_pred ---cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC-CCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccc
Confidence 3344566777888888888877655555555554 7777777777665311
Q ss_pred --------------chhhhcCCCCCeeecccCcCccccch-hhhcCCCCCeeccccccCc-----ccCChhhhcCccCCe
Q 037538 362 --------------PVGIENLVNLSLLGLEGNNLSGSVPE-VIGRLNKLEGLELNANKFS-----GFMPSSLGNLTVLSR 421 (461)
Q Consensus 362 --------------p~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~ 421 (461)
+..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.++ +..+..|..+++|+.
T Consensus 405 ~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~ 484 (844)
T 3j0a_A 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484 (844)
T ss_dssp EEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEEC
T ss_pred eeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccE
Confidence 11123556666666666666532211 1222334444444444433 122233444555555
Q ss_pred eecccccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 422 LLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 422 L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
|++++|++++..|..+..+++|+.|++++|+++
T Consensus 485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 517 (844)
T 3j0a_A 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517 (844)
T ss_dssp CCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCS
T ss_pred EECCCCcccccChhHccchhhhheeECCCCCCC
Confidence 555555555555555555555555555555554
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.8e-42 Score=326.55 Aligned_cols=293 Identities=32% Similarity=0.517 Sum_probs=205.8
Q ss_pred cCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc--eeeEEecCCC--CcEEEEEcCCCCccc--ccCccccCCCCCC
Q 037538 32 ATIEADKLALLDFKNHLTQDPLQIMSSWNDSVHFCN--WVGVTCSPSN--GRVTVLKLESKQLVG--SIPASIGNLTNLT 105 (461)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~l~~~~l~~--~~~~~l~~l~~L~ 105 (461)
.|.++|+.||++||+++. +|. .+.+|..+.+||. |.||+|+... ++|++|+++++.+.+ .+|..+.++++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 589999999999999996 665 6789988889998 9999998654 789999999999988 8888899999999
Q ss_pred EEecCC-CCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCC
Q 037538 106 GINLFQ-NRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTS 184 (461)
Q Consensus 106 ~L~L~~-n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 184 (461)
+|++++ |.+.+.+|..|..+++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999985 8888888888888888888888888888788888888888888888888888778888888888888888888
Q ss_pred CCcccCCccCCCCC-CCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhc
Q 037538 185 NLTGNIPAWVGNFS-SLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLS 263 (461)
Q Consensus 185 ~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 263 (461)
.+++.+|..+..++ +|++|++++|.+++.+|.. +.
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~--------------------------------------------~~ 195 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT--------------------------------------------FA 195 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG--------------------------------------------GG
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeeeccCChH--------------------------------------------Hh
Confidence 87777777777766 6777777776666555544 33
Q ss_pred CCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhc
Q 037538 264 NASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANL 343 (461)
Q Consensus 264 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~ 343 (461)
.++ |++|++++|.+++..|..+..+++|+.|++++|++++ ..+. +..+++|++|++++|.+++.+|..+..+
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 267 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF------DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL 267 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC------BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee------ecCc-ccccCCCCEEECcCCcccCcCChHHhcC
Confidence 333 6666666666666666666666666666666665543 1111 3334445555555544444444444333
Q ss_pred cccccEEEccCCcCcccCchhhhcCCCCCeeecccCc
Q 037538 344 STHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNN 380 (461)
Q Consensus 344 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 380 (461)
+ +|++|++++|+++|.+|.. ..+++|+.+++++|+
T Consensus 268 ~-~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 268 K-FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp T-TCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred c-CCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 3 4444444444444434332 334444444444443
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=339.20 Aligned_cols=361 Identities=19% Similarity=0.228 Sum_probs=289.6
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|++++|.+.+..+..+.++++|++|++++|++++..|..|..+++|++|++++|+++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 67999999999998777788999999999999999999877889999999999999999998 67766 8999999999
Q ss_pred cCCcCCC-cCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCC--CEEECccCCC--cccCChhhhc------------
Q 037538 158 SANDFIG-QIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSL--QVLLLARNNL--HGSIPNELGQ------------ 220 (461)
Q Consensus 158 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~~~~l~~------------ 220 (461)
++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9999987 578999999999999999999886 346667777 9999999998 6666655544
Q ss_pred --------------CCCCcEEecCCCC------------------------------chhh-----c--cCCCCCcEEEc
Q 037538 221 --------------LSALGFFTLYENF------------------------------ISDV-----G--LTLPNLKIFAG 249 (461)
Q Consensus 221 --------------l~~L~~L~l~~n~------------------------------l~~~-----~--~~l~~L~~L~l 249 (461)
+++|+.+++++|. +... . ...++|+.|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 4455555555553 2110 0 01347788888
Q ss_pred cCccCccccChhh-----cCCCCCCEEEcccccccccCCc--------------------------cCCCCCCCCEEEcc
Q 037538 250 GVNYFTGSIPVSL-----SNASNLQVLDFAENGLTGTIPE--------------------------NFGSLKDLVRLNFD 298 (461)
Q Consensus 250 ~~n~~~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~~~--------------------------~~~~l~~L~~L~L~ 298 (461)
++|.++|.+|..+ .++++|+.+++++|.+ .+|. .+..+++|++|+++
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred ecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeE
Confidence 8888877777776 6666666666555554 2220 12677889999999
Q ss_pred cCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCcc--ccchHHHhccccccEEEccCCcCcccCchh-hhcCCCCCeee
Q 037538 299 QNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGG--EMPISIANLSTHLRILTMGYNLMHGNIPVG-IENLVNLSLLG 375 (461)
Q Consensus 299 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~ 375 (461)
+|++++ ..+..+..+++|++|++++|++++ .+|..+..++ +|++|++++|.+++.+|.. +..+++|+.|+
T Consensus 333 ~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 333 NNLLTD------TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp SSCCCT------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred CCccCh------hhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 998887 455667888999999999999986 5666777776 8999999999998756654 77889999999
Q ss_pred cccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCcc-CCCCCCCCEEEccCCCCc
Q 037538 376 LEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPS-LGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 376 Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~ls~N~l~ 454 (461)
+++|.+++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++.
T Consensus 406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCc
Confidence 999999888777664 78999999999998 78888889999999999999999 56664 889999999999999998
Q ss_pred ccC
Q 037538 455 GTI 457 (461)
Q Consensus 455 ~~i 457 (461)
+..
T Consensus 482 c~c 484 (520)
T 2z7x_B 482 CSC 484 (520)
T ss_dssp CCH
T ss_pred ccC
Confidence 754
No 18
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-39 Score=340.93 Aligned_cols=158 Identities=22% Similarity=0.205 Sum_probs=92.9
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.+++.|++++|.+.+..+.++.++++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 73 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 152 (680)
T 1ziw_A 73 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEEC
T ss_pred cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEc
Confidence 35666666666665444445666667777777766666555556666777777777777666666666666666666666
Q ss_pred cCCcCCCcCchhhc--CCCCCcEEEccCCCCcccC---------------------------------------------
Q 037538 158 SANDFIGQIPDQLI--SLTKLEIIRLGTSNLTGNI--------------------------------------------- 190 (461)
Q Consensus 158 ~~n~~~~~~~~~l~--~l~~L~~L~l~~n~l~~~~--------------------------------------------- 190 (461)
++|.+++..+..+. .+++|++|++++|.+.+..
T Consensus 153 ~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n 232 (680)
T 1ziw_A 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232 (680)
T ss_dssp CSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS
T ss_pred cCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCC
Confidence 66665544443322 2344444444444433222
Q ss_pred ------CccCCCCC--CCCEEECccCCCcccCChhhhcCCCCcEEecCCCCch
Q 037538 191 ------PAWVGNFS--SLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 191 ------~~~l~~l~--~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 235 (461)
|..+..++ +|++|++++|.+.+..|..++.+++|++|++++|.+.
T Consensus 233 ~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBS
T ss_pred cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccC
Confidence 22222232 3777777777776666666777777777777766653
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-40 Score=354.38 Aligned_cols=374 Identities=22% Similarity=0.234 Sum_probs=257.4
Q ss_pred CcEEEEEcCCCCccccc-CccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcC--CCCCCCCCE
Q 037538 78 GRVTVLKLESKQLVGSI-PASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTN--LSHCTELRS 154 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~ 154 (461)
.+++.|++++|...+.+ |.++.++++|++|+|++|.+.+..|..|..+++|++|++++|.+++.+|.. +.++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 45677777777554444 556777777777777777777666777777777777777777776555544 667777777
Q ss_pred EEccCCcCCCcCc-hhhcCCCCCcEEEccCCCCcccCCc--------------------------cCCCCCC------CC
Q 037538 155 FEASANDFIGQIP-DQLISLTKLEIIRLGTSNLTGNIPA--------------------------WVGNFSS------LQ 201 (461)
Q Consensus 155 L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~--------------------------~l~~l~~------L~ 201 (461)
|++++|.+.+..+ ..++++++|++|++++|.+++..+. .+..+++ |+
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 7777777665433 4566777777777776666543332 2222222 77
Q ss_pred EEECccCCCcccCChhhhc--------------------------------------CCCCcEEecCCCCchhh----cc
Q 037538 202 VLLLARNNLHGSIPNELGQ--------------------------------------LSALGFFTLYENFISDV----GL 239 (461)
Q Consensus 202 ~L~l~~n~~~~~~~~~l~~--------------------------------------l~~L~~L~l~~n~l~~~----~~ 239 (461)
+|++++|.+++..+..+.. .++|+.|++++|.+... ..
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 287 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence 7777777665544433322 15677777777776443 34
Q ss_pred CCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCC
Q 037538 240 TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC 319 (461)
Q Consensus 240 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~ 319 (461)
.+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.... +..+.++
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~l 361 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ------DQTFKFL 361 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC------SSCSCSC
T ss_pred cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC------hhhhcCC
Confidence 5677777777777777777777777777777777777777666777777777777777777776532 2234455
Q ss_pred CCCCEEEccCCcCcc------------------cc----------------------chHHHhccccccEEEccCCcCcc
Q 037538 320 TSLEVLGLAQNGFGG------------------EM----------------------PISIANLSTHLRILTMGYNLMHG 359 (461)
Q Consensus 320 ~~L~~L~L~~n~~~~------------------~~----------------------~~~~~~~~~~L~~L~l~~n~l~~ 359 (461)
++|+.|++++|.+++ .+ +..+..++ +|++|++++|.+++
T Consensus 362 ~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~-~L~~L~Ls~N~l~~ 440 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP-HLQILILNQNRFSS 440 (844)
T ss_dssp CCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCT-TCCEEEEESCCCCC
T ss_pred CCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCC-ccceeeCCCCcccc
Confidence 555555555555432 11 11123444 89999999999886
Q ss_pred cCch-hhhcCCCCCeeecccCcCc-----cccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccC
Q 037538 360 NIPV-GIENLVNLSLLGLEGNNLS-----GSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSI 433 (461)
Q Consensus 360 ~~p~-~~~~l~~L~~L~Ls~n~l~-----~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 433 (461)
..+. .+..+++|+.|++++|.+. +..+..+.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..
T Consensus 441 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 520 (844)
T 3j0a_A 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520 (844)
T ss_dssp CCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCC
T ss_pred cccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccC
Confidence 4432 3456789999999999987 344456788899999999999999888888999999999999999998766
Q ss_pred CccCCCCCCCCEEEccCCCCcccCCCC
Q 037538 434 PPSLGNCKKLQVLNLSSNNLNGTIPKE 460 (461)
Q Consensus 434 p~~l~~l~~L~~L~ls~N~l~~~ip~~ 460 (461)
|..+. ++|+.|++++|+++|.+|..
T Consensus 521 ~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 521 HNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp CCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred hhhhh--ccccEEECCCCcCCCCChhH
Confidence 66665 78999999999999888764
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.7e-39 Score=336.75 Aligned_cols=372 Identities=20% Similarity=0.175 Sum_probs=287.1
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
..+++|+|++|.+++..+.+|.++++|++|+|++|++++..+.+|..+++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47999999999999777789999999999999999999777888999999999999999999666678999999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcc-cCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCc----EEecCCC
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTG-NIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALG----FFTLYEN 232 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~l~~n 232 (461)
++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+..+.+++ .++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999997767789999999999999999875 4678889999999999999999876665554333221 2222222
Q ss_pred Cchh----------------------------------------------------------------------------
Q 037538 233 FISD---------------------------------------------------------------------------- 236 (461)
Q Consensus 233 ~l~~---------------------------------------------------------------------------- 236 (461)
.+..
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 2100
Q ss_pred -------------------------------hccCCCCCcEEEccCccCccccC-------------------hhhcCCC
Q 037538 237 -------------------------------VGLTLPNLKIFAGGVNYFTGSIP-------------------VSLSNAS 266 (461)
Q Consensus 237 -------------------------------~~~~l~~L~~L~l~~n~~~~~~~-------------------~~l~~~~ 266 (461)
.......++.+++.+|.+.+..+ .....++
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 00011234444444443322111 1122356
Q ss_pred CCCEEEccccccccc--CC-----------------------ccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCC
Q 037538 267 NLQVLDFAENGLTGT--IP-----------------------ENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTS 321 (461)
Q Consensus 267 ~L~~L~l~~n~l~~~--~~-----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~ 321 (461)
+|+.+++++|.+... .+ ..+..+++|+.+++..+..... .....+..+++
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-----~~~~~~~~l~~ 446 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-----SEFSVFLSLRN 446 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEEST-----TSSCTTTTCTT
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccc-----ccccccccccc
Confidence 677777777765322 22 2344455555555555544332 12234677889
Q ss_pred CCEEEccCCcCccccchHHHhccccccEEEccCCcCc-ccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeecc
Q 037538 322 LEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMH-GNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLEL 400 (461)
Q Consensus 322 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L 400 (461)
++.++++.|.+.+..+..+...+ .+++|++++|... +..|..+..+++|+.|+|++|++++..|..|.++++|++|+|
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~-~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccccccccccccccccccccch-hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 99999999999877776666665 8999999999754 457788899999999999999999888999999999999999
Q ss_pred ccccCcccCChhhhcCccCCeeecccccccccCCccCCCC-CCCCEEEccCCCCcc
Q 037538 401 NANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNC-KKLQVLNLSSNNLNG 455 (461)
Q Consensus 401 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~ls~N~l~~ 455 (461)
++|++++..|..|..+++|+.|++++|++++..|..+..+ ++|+.|++++|++.-
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 9999998888999999999999999999999999999888 689999999999864
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-39 Score=332.29 Aligned_cols=369 Identities=18% Similarity=0.182 Sum_probs=272.8
Q ss_pred EcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCC
Q 037538 84 KLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFI 163 (461)
Q Consensus 84 ~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 163 (461)
+-++.+++ .+|..+. +++++|++++|.+++..+.+|..+++|++|++++|++++..|..|.++++|++|++++|+++
T Consensus 13 ~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp ECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC
Confidence 33344444 4565443 68999999999999878888999999999999999999777888999999999999999999
Q ss_pred CcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcc-cCChhhhcCCCCcEEecCCCCchhhc----
Q 037538 164 GQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG-SIPNELGQLSALGFFTLYENFISDVG---- 238 (461)
Q Consensus 164 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~---- 238 (461)
+..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+..+.
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 169 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG
T ss_pred ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc
Confidence 8888899999999999999999996555579999999999999999986 57999999999999999999886542
Q ss_pred cCCCCC----cEEEccCccCccc---------------------------------------------------------
Q 037538 239 LTLPNL----KIFAGGVNYFTGS--------------------------------------------------------- 257 (461)
Q Consensus 239 ~~l~~L----~~L~l~~n~~~~~--------------------------------------------------------- 257 (461)
..+++| ..+++++|.+++.
T Consensus 170 ~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 249 (570)
T 2z63_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249 (570)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTT
T ss_pred cchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchh
Confidence 123334 5666666554432
Q ss_pred ------------------------cChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCc---
Q 037538 258 ------------------------IPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDL--- 310 (461)
Q Consensus 258 ------------------------~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--- 310 (461)
.|..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+...+...+
T Consensus 250 ~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L 327 (570)
T 2z63_A 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSL 327 (570)
T ss_dssp TTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSC
T ss_pred hhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCccccccc
Confidence 3344555678888888888776 456666555 66666666655543221100
Q ss_pred ------------------------------------hhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccC
Q 037538 311 ------------------------------------NFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGY 354 (461)
Q Consensus 311 ------------------------------------~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~ 354 (461)
..+..+..+++|+.|++++|.+.+..+ .+..++ +|++|++++
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~-~L~~L~l~~ 405 (570)
T 2z63_A 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLE-QLEHLDFQH 405 (570)
T ss_dssp CEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCT-TCCEEECTT
T ss_pred CEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccC-CCCEEEccC
Confidence 012333444445555555554443222 233333 566666666
Q ss_pred CcCcccCc-hhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCc-ccCChhhhcCccCCeeeccccccccc
Q 037538 355 NLMHGNIP-VGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFS-GFMPSSLGNLTVLSRLLMEENRFEGS 432 (461)
Q Consensus 355 n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~ 432 (461)
|.+.+..+ ..+..+++|+.|++++|.+.+..|..+.++++|+.|++++|+++ +.+|..+..+++|+.|++++|++++.
T Consensus 406 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp SEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence 66665444 35667778888888888887777777888888888888888887 56788888888888888888888887
Q ss_pred CCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 433 IPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 433 ~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
.|..+..+++|+.|++++|++++..|.
T Consensus 486 ~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 486 SPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 788888888888888888888866554
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.2e-39 Score=332.64 Aligned_cols=362 Identities=22% Similarity=0.230 Sum_probs=285.1
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|++++|.+.+..+.++.++++|++|++++|.+++..|..|..+++|++|++++|+++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57899999999998777788999999999999999998877888999999999999999988 67766 8899999999
Q ss_pred cCCcCCC-cCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCC--CEEECccCCC--cccCChhhhc------------
Q 037538 158 SANDFIG-QIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSL--QVLLLARNNL--HGSIPNELGQ------------ 220 (461)
Q Consensus 158 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~~~~l~~------------ 220 (461)
++|++.+ .+|..++++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+..
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999886 4568899999999999999988753 34445555 9999999988 6666655544
Q ss_pred --------------CCCCcEEecCCCCc----------------------------h-----hh--ccCCCCCcEEEccC
Q 037538 221 --------------LSALGFFTLYENFI----------------------------S-----DV--GLTLPNLKIFAGGV 251 (461)
Q Consensus 221 --------------l~~L~~L~l~~n~l----------------------------~-----~~--~~~l~~L~~L~l~~ 251 (461)
+++|+.+++++|.. . .+ ....++|++|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 33566666666531 0 00 01124788888888
Q ss_pred ccCccccChhh-----cCC--------------------------CCCCEEEcccccccccCCccCCCCCCCCEEEcccC
Q 037538 252 NYFTGSIPVSL-----SNA--------------------------SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQN 300 (461)
Q Consensus 252 n~~~~~~~~~l-----~~~--------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 300 (461)
|.++|.+|..+ .++ .+|++|++++|.+.... ....+++|++|++++|
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQN 363 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCC
Confidence 88887777655 222 23556666666553221 1267889999999999
Q ss_pred cCcccCCCCchhhhhhcCCCCCCEEEccCCcCcc--ccchHHHhccccccEEEccCCcCcccCch-hhhcCCCCCeeecc
Q 037538 301 ELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGG--EMPISIANLSTHLRILTMGYNLMHGNIPV-GIENLVNLSLLGLE 377 (461)
Q Consensus 301 ~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~Ls 377 (461)
++++ ..+..+.++++|+.|++++|++++ .+|..+..++ +|++|++++|.+++.+|. .+..+++|+.|+++
T Consensus 364 ~l~~------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~ 436 (562)
T 3a79_B 364 VFTD------SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436 (562)
T ss_dssp CCCT------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred cccc------chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC-CCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence 9987 456677889999999999999985 3445566666 999999999999985554 47788999999999
Q ss_pred cCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCcc-CCCCCCCCEEEccCCCCccc
Q 037538 378 GNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPS-LGNCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 378 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~ 456 (461)
+|.+++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++.+.
T Consensus 437 ~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 437 SNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 9999887776654 79999999999998 78888779999999999999999 56665 89999999999999999876
Q ss_pred CC
Q 037538 457 IP 458 (461)
Q Consensus 457 ip 458 (461)
.|
T Consensus 513 c~ 514 (562)
T 3a79_B 513 CP 514 (562)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.5e-38 Score=316.46 Aligned_cols=331 Identities=18% Similarity=0.194 Sum_probs=278.0
Q ss_pred CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCC-CcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEE
Q 037538 102 TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI-PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIR 180 (461)
Q Consensus 102 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 180 (461)
++|++|++++|.+++..|..|..+++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999999888999999999999999999987555 56799999999999999999988899999999999999
Q ss_pred ccCCCCcccCCcc--CCCCCCCCEEECccCCCcccCChh-hhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccc
Q 037538 181 LGTSNLTGNIPAW--VGNFSSLQVLLLARNNLHGSIPNE-LGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGS 257 (461)
Q Consensus 181 l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~ 257 (461)
+++|.+++..+.. +.++++|++|++++|.+.+..|.. +..+++|++|++++|.+ ++.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l--------------------~~~ 169 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV--------------------KSI 169 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB--------------------SCC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc--------------------ccc
Confidence 9999998755544 889999999999999999877765 67777666666666554 444
Q ss_pred cChhhcCC--CCCCEEEcccccccccCCcc--------CCCCCCCCEEEcccCcCcccCCCCchhhhhhcC---CCCCCE
Q 037538 258 IPVSLSNA--SNLQVLDFAENGLTGTIPEN--------FGSLKDLVRLNFDQNELGSREIGDLNFLKFLAN---CTSLEV 324 (461)
Q Consensus 258 ~~~~l~~~--~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~---~~~L~~ 324 (461)
.+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|++++ ..+..+.. .++|+.
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~------~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE------SMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH------HHHHHHHHHTTTCCEEE
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc------cchhhhhccccccceee
Confidence 44445443 67889999999887655443 3366899999999999987 44444433 489999
Q ss_pred EEccCCcCcccc----------chHHHhc-cccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCC
Q 037538 325 LGLAQNGFGGEM----------PISIANL-STHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLN 393 (461)
Q Consensus 325 L~L~~n~~~~~~----------~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~ 393 (461)
|++++|...+.. +..+..+ .++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..++
T Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 323 (455)
T 3v47_A 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323 (455)
T ss_dssp EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred EeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc
Confidence 999988654321 1112211 13899999999999999999999999999999999999988888999999
Q ss_pred CCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 394 KLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 394 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
+|++|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++.+ +|.
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~ 388 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD 388 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCT
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc-CCH
Confidence 99999999999998889999999999999999999999889999999999999999999985 443
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=323.63 Aligned_cols=362 Identities=19% Similarity=0.202 Sum_probs=294.2
Q ss_pred EEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCC
Q 037538 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAN 160 (461)
Q Consensus 81 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 160 (461)
+.+++++++++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57899999998 6777666 89999999999999877889999999999999999999877899999999999999999
Q ss_pred cCCCcCchhhcCCCCCcEEEccCCCCcc-cCCccCCCCCCCCEEECccCCCcccCChhhhcCCCC--cEEecCCCCc--h
Q 037538 161 DFIGQIPDQLISLTKLEIIRLGTSNLTG-NIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSAL--GFFTLYENFI--S 235 (461)
Q Consensus 161 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~ 235 (461)
+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 998 56766 89999999999999987 578899999999999999999986 457778888 9999999887 1
Q ss_pred h-hcc-----------------------------CCCCCcEEEccCcc-------CccccChhhcC--------------
Q 037538 236 D-VGL-----------------------------TLPNLKIFAGGVNY-------FTGSIPVSLSN-------------- 264 (461)
Q Consensus 236 ~-~~~-----------------------------~l~~L~~L~l~~n~-------~~~~~~~~l~~-------------- 264 (461)
. ... .+++|+.+++++|. +.+.+| .+..
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 1 111 13344444444443 222222 1222
Q ss_pred -------------CCCCCEEEcccccccccCCccC-----CCCCCCCEEEcccCcCcccCCCCchhhh------------
Q 037538 265 -------------ASNLQVLDFAENGLTGTIPENF-----GSLKDLVRLNFDQNELGSREIGDLNFLK------------ 314 (461)
Q Consensus 265 -------------~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~~~------------ 314 (461)
.++|++|++++|.+++.+|..+ ..+++|+.+++++|.+ ..+.. .+..
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~--~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQS--YIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTH--HHHHHHHTCCCSEEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchh--hhhcccccCceeEEEc
Confidence 3478888888888888888877 7788877777777776 21100 0000
Q ss_pred ---------hhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcc--cCchhhhcCCCCCeeecccCcCcc
Q 037538 315 ---------FLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHG--NIPVGIENLVNLSLLGLEGNNLSG 383 (461)
Q Consensus 315 ---------~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~ 383 (461)
....+++|++|++++|++++.+|..+..++ +|++|++++|.+++ .+|..+..+++|++|++++|.+.+
T Consensus 310 ~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCS-SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred CCCccccccchhhCCcccEEEeECCccChhhhhhhccCC-CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 015788999999999999988888887776 99999999999986 566788999999999999999997
Q ss_pred ccchh-hhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCCCC
Q 037538 384 SVPEV-IGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKE 460 (461)
Q Consensus 384 ~~~~~-l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~~ 460 (461)
.+|.. +..+++|+.|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.+
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 462 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG 462 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTT
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHH
Confidence 67764 77889999999999999988777664 79999999999999 78988889999999999999998 67764
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3e-38 Score=323.47 Aligned_cols=376 Identities=17% Similarity=0.184 Sum_probs=280.3
Q ss_pred CcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCc
Q 037538 65 FCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPT 144 (461)
Q Consensus 65 ~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 144 (461)
.|.|.|+ |+. ++++++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..|.
T Consensus 3 ~C~~~~~-c~~----------~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDG----------RSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EEC----------TTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EEC----------CCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4888877 743 455555 5666554 8999999999999988888999999999999999999988888
Q ss_pred CCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcc-cCCccCCCCCCCCEEECccCCCcccCC-hhhhcCC
Q 037538 145 NLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTG-NIPAWVGNFSSLQVLLLARNNLHGSIP-NELGQLS 222 (461)
Q Consensus 145 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~ 222 (461)
.|.++++|++|++++|.+.+..|..++++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+..++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 99999999999999999998888889999999999999999986 457789999999999999999555555 6899999
Q ss_pred CCcEEecCCCCchhh----ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccC--C-ccCCCCCCCCEE
Q 037538 223 ALGFFTLYENFISDV----GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTI--P-ENFGSLKDLVRL 295 (461)
Q Consensus 223 ~L~~L~l~~n~l~~~----~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~-~~~~~l~~L~~L 295 (461)
+|++|++++|.+... ...+++|+.|+++.|.+.......+..+++|++|++++|.+++.. + .....+++|+.|
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 999999999988643 345788999999999876433333456899999999999887642 1 111222333333
Q ss_pred EcccCcC----------------------------cccCCC-------------------------------C-------
Q 037538 296 NFDQNEL----------------------------GSREIG-------------------------------D------- 309 (461)
Q Consensus 296 ~L~~n~l----------------------------~~~~~~-------------------------------~------- 309 (461)
++++|.+ .+.... .
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence 3332222 110000 0
Q ss_pred --------------chhhhhh-cCCCCCCEEEccCCcCccccchH---HHhccccccEEEccCCcCcccCc--hhhhcCC
Q 037538 310 --------------LNFLKFL-ANCTSLEVLGLAQNGFGGEMPIS---IANLSTHLRILTMGYNLMHGNIP--VGIENLV 369 (461)
Q Consensus 310 --------------~~~~~~l-~~~~~L~~L~L~~n~~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~p--~~~~~l~ 369 (461)
..++..+ ..+++|++|++++|.+++.+|.. +..++ +|++|++++|++++..+ ..+..++
T Consensus 309 ~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP-SLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST-TCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred cccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccc-cCcEEEccCCcccccccchhhhhcCC
Confidence 0122222 46788888888888888766543 34444 78888888888875432 4577788
Q ss_pred CCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChh------------------hhcCccCCeeecccccccc
Q 037538 370 NLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSS------------------LGNLTVLSRLLMEENRFEG 431 (461)
Q Consensus 370 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~------------------~~~l~~L~~L~l~~n~l~~ 431 (461)
+|++|++++|+++ .+|..+..+++|++|++++|++++ +|.. +..+++|+.|++++|+++
T Consensus 388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~- 464 (549)
T 2z81_A 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK- 464 (549)
T ss_dssp TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-
T ss_pred CCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-
Confidence 8888888888887 677777777777777777777652 2222 136778888888888887
Q ss_pred cCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 432 SIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 432 ~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
.+|. ...+++|+.|++++|++++.+|.
T Consensus 465 ~ip~-~~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 465 TLPD-ASLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp SCCC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred cCCC-cccCccCCEEecCCCccCCcCHH
Confidence 6666 45688899999999998876664
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-37 Score=312.43 Aligned_cols=342 Identities=29% Similarity=0.389 Sum_probs=286.0
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.+++.|++.++.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+..+ +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 468899999988863 44 47889999999999999985 444 8999999999999999985443 889999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhh
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (461)
++|.+.+. +. +.++++|++|++++|.+.+ ++ .+..+++|++|+++ +.+.+. ..+..+++|++|++++|.+..+
T Consensus 120 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 120 FNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp CSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCCC
Confidence 99998764 33 8899999999999999884 33 48889999999996 455433 2388999999999999988654
Q ss_pred c--cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhh
Q 037538 238 G--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKF 315 (461)
Q Consensus 238 ~--~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 315 (461)
. ..+++|+.|++++|.+++..| ++.+++|++|++++|.+++. ..+..+++|+.|++++|.+.+.. .
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--------~ 260 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--------P 260 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--------G
T ss_pred hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch--------h
Confidence 3 457899999999999987665 77789999999999998754 46788999999999999987632 1
Q ss_pred hcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCC
Q 037538 316 LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKL 395 (461)
Q Consensus 316 l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L 395 (461)
+..+++|+.|++++|.+++..+ +..++ +|++|++++|.+.+..+ +..+++|+.|++++|++++..| +..+++|
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 333 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLT-ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL 333 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCT-TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCC-ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccC
Confidence 7788999999999999986444 55555 89999999999987544 7889999999999999997655 7789999
Q ss_pred CeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcc
Q 037538 396 EGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 396 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 455 (461)
+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 334 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9999999999865 578899999999999999998777 8889999999999999886
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-37 Score=309.35 Aligned_cols=316 Identities=19% Similarity=0.216 Sum_probs=252.0
Q ss_pred CCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcC
Q 037538 87 SKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQI 166 (461)
Q Consensus 87 ~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 166 (461)
+++++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+.+..
T Consensus 20 ~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 96 (477)
T 2id5_A 20 RKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96 (477)
T ss_dssp SCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC
Confidence 34444 4565443 68999999999999877888999999999999999999777889999999999999999988666
Q ss_pred chhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcE
Q 037538 167 PDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKI 246 (461)
Q Consensus 167 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~ 246 (461)
+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++ |+.
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--------------------L~~ 156 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS--------------------LEQ 156 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT--------------------CCE
T ss_pred cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCC--------------------CCE
Confidence 667888999999999999998888888889999999999999888766666665544 444
Q ss_pred EEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEE
Q 037538 247 FAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLG 326 (461)
Q Consensus 247 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~ 326 (461)
|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|...+ .++.......+|+.|+
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD------TMTPNCLYGLNLTSLS 230 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC------EECTTTTTTCCCSEEE
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc------ccCcccccCccccEEE
Confidence 5555555555555678889999999999999988888888899999999999887655 3333344455888888
Q ss_pred ccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCc
Q 037538 327 LAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFS 406 (461)
Q Consensus 327 L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 406 (461)
+++|++++..+..+..++ +|++|++++|.+++..+..+..+++|+.|+|++|++.+..|..+..+++|+.|++++|+++
T Consensus 231 l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 231 ITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp EESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred CcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 888888743334555555 8888888888888777777888888888888888888777888888888888888888888
Q ss_pred ccCChhhhcCccCCeeeccccccccc
Q 037538 407 GFMPSSLGNLTVLSRLLMEENRFEGS 432 (461)
Q Consensus 407 ~~~~~~~~~l~~L~~L~l~~n~l~~~ 432 (461)
+..+..|..+++|+.|++++|++...
T Consensus 310 ~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred eeCHhHcCCCcccCEEEccCCCccCc
Confidence 76666778888888888888888743
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1e-36 Score=298.65 Aligned_cols=349 Identities=16% Similarity=0.164 Sum_probs=233.4
Q ss_pred CCCCCCCCCCcc-eeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCC
Q 037538 56 MSSWNDSVHFCN-WVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLT 134 (461)
Q Consensus 56 ~~~w~~~~~~c~-w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls 134 (461)
++.|..+.+||. |.+..|.... +.+............-..++++++|+++++.++...+..+..+++|++|+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~-----~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYD-----VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEES-----CEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceee-----eeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 467887767664 5555554211 1111111111111122346899999999999885444557889999999999
Q ss_pred CCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccC
Q 037538 135 YNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSI 214 (461)
Q Consensus 135 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 214 (461)
+|.+.+..+..+..+++|++|++++|.+.+..|..++++++|++|++++|.++...+..+.++++|++|++++|.+.+..
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 99998777778999999999999999998888888999999999999999998444444688999999999999999877
Q ss_pred ChhhhcCCCCcEEecCCCCchhhc-cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCC
Q 037538 215 PNELGQLSALGFFTLYENFISDVG-LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLV 293 (461)
Q Consensus 215 ~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 293 (461)
+..+..+++|++|++++|.+..+. ..+++|+.+++++|.+++ +...++|++|++++|.+..... ...++|+
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~ 229 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG---PVNVELT 229 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCC
T ss_pred hhhccCCCCCCEEECCCCcCCccccccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccc---ccccccc
Confidence 778888899999999888876543 336677777777776653 2334567777777777664422 2235677
Q ss_pred EEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCe
Q 037538 294 RLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSL 373 (461)
Q Consensus 294 ~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 373 (461)
.|++++|.+++. ..+..+++|++|++++|.+++..|..+..++ +|++|++++|.+++ +|..+..+++|+.
T Consensus 230 ~L~l~~n~l~~~--------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~-~~~~~~~l~~L~~ 299 (390)
T 3o6n_A 230 ILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRLVA-LNLYGQPIPTLKV 299 (390)
T ss_dssp EEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEEESGGGTTCS-SCCEEECCSSCCCE-EECSSSCCTTCCE
T ss_pred EEECCCCCCccc--------HHHcCCCCccEEECCCCcCCCcChhHccccc-cCCEEECCCCcCcc-cCcccCCCCCCCE
Confidence 777777766542 3455666777777777766665566665554 66666666666664 3444455666666
Q ss_pred eecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccc
Q 037538 374 LGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEG 431 (461)
Q Consensus 374 L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 431 (461)
|++++|++. .+|..+..+++|+.|++++|+++.. + +..+++|+.|++++|++++
T Consensus 300 L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred EECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 666666666 4555566666666666666666533 2 4555666666666666654
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2e-37 Score=308.45 Aligned_cols=343 Identities=24% Similarity=0.326 Sum_probs=178.9
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCC-------------CEEeCCCCCCCCCCCc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKL-------------QDLNLTYNYLSGKIPT 144 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L-------------~~L~Ls~n~l~~~~p~ 144 (461)
.++++++++++.+ +.+|++++++++|++|++++|.+.|.+|.+++.+++| ++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 5788888998888 7888889999999999999988888888888877654 888888888773 444
Q ss_pred CCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCC
Q 037538 145 NLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSAL 224 (461)
Q Consensus 145 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 224 (461)
. .++|++|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .++.+++|
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 2 3577777777777765 5542 3566666666666653 2221 1466666666666664 45 46666666
Q ss_pred cEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccc-------------------cCCcc
Q 037538 225 GFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTG-------------------TIPEN 285 (461)
Q Consensus 225 ~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~-------------------~~~~~ 285 (461)
++|++++|.+..+....++|++|++++|.+++ +| .+..+++|++|++++|.+++ .+| .
T Consensus 156 ~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~ 232 (454)
T 1jl5_A 156 KIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-E 232 (454)
T ss_dssp CEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-C
T ss_pred CEEECCCCcCcccCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-c
Confidence 66666666665554445566666666666654 34 35555555555555555443 233 2
Q ss_pred CCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcc--cCch
Q 037538 286 FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHG--NIPV 363 (461)
Q Consensus 286 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~ 363 (461)
++.+++|++|++++|++++.+. ..++|+.|++++|.+++ +|.. .++|++|++++|.+++ .+|.
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~~----------~~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls~N~l~~l~~~~~ 297 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLPD----------LPPSLEALNVRDNYLTD-LPEL----PQSLTFLDVSENIFSGLSELPP 297 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCS----------CCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSEESCCCT
T ss_pred cCCCCCCCEEECCCCcCCcccc----------cccccCEEECCCCcccc-cCcc----cCcCCEEECcCCccCcccCcCC
Confidence 5555566666666665554211 11344444444444442 2211 1244444444444443 1111
Q ss_pred hh-------------hcC-CCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccc
Q 037538 364 GI-------------ENL-VNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRF 429 (461)
Q Consensus 364 ~~-------------~~l-~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 429 (461)
.+ ..+ ++|+.|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|+.|++++|++
T Consensus 298 ~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 298 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp TCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC
T ss_pred cCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCC
Confidence 11 112 467777777777764 4443 467888888888887 4565 467888888888888
Q ss_pred cc--cCCccCCCC-------------CCCCEEEccCCCCcc--cCCCCC
Q 037538 430 EG--SIPPSLGNC-------------KKLQVLNLSSNNLNG--TIPKEV 461 (461)
Q Consensus 430 ~~--~~p~~l~~l-------------~~L~~L~ls~N~l~~--~ip~~~ 461 (461)
++ .+|.++..+ ++|+.|++++|++.| .+|.++
T Consensus 370 ~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 370 REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp SSCCCCCTTCCEEECCC--------------------------------
T ss_pred CcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence 87 677777776 778888888888887 788653
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.5e-37 Score=315.44 Aligned_cols=357 Identities=19% Similarity=0.204 Sum_probs=284.2
Q ss_pred EEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCC
Q 037538 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAN 160 (461)
Q Consensus 81 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 160 (461)
+.++++++++++ +|..+. +++++|++++|.+++..+.+|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 789999999984 776654 89999999999999777789999999999999999999888999999999999999999
Q ss_pred cCCCcCchhhcCCCCCcEEEccCCCCcc-cCCccCCCCCCCCEEECccCCCcccCChhhhcCCCC--cEEecCCCCc--h
Q 037538 161 DFIGQIPDQLISLTKLEIIRLGTSNLTG-NIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSAL--GFFTLYENFI--S 235 (461)
Q Consensus 161 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~ 235 (461)
+++ .+|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+. .+..+++| ++|++++|.+ .
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 998 56766 89999999999999986 4568899999999999999999863 45555555 9999999877 2
Q ss_pred hhc------------------------------cCCCCCcEEEccCcc----------------------------Cccc
Q 037538 236 DVG------------------------------LTLPNLKIFAGGVNY----------------------------FTGS 257 (461)
Q Consensus 236 ~~~------------------------------~~l~~L~~L~l~~n~----------------------------~~~~ 257 (461)
... ..+++|+.++++.|. +++.
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 110 123345555555542 1110
Q ss_pred ----cChhhcCCCCCCEEEcccccccccCCccC-----CCCCC--------------------------CCEEEcccCcC
Q 037538 258 ----IPVSLSNASNLQVLDFAENGLTGTIPENF-----GSLKD--------------------------LVRLNFDQNEL 302 (461)
Q Consensus 258 ----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~--------------------------L~~L~L~~n~l 302 (461)
++.. ...++|++|++++|.+++.+|..+ ..++. |++|++++|.+
T Consensus 265 ~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 265 CSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 1111 122478888888888888888765 33333 44444444444
Q ss_pred cccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcc--cCchhhhcCCCCCeeecccCc
Q 037538 303 GSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHG--NIPVGIENLVNLSLLGLEGNN 380 (461)
Q Consensus 303 ~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~Ls~n~ 380 (461)
.... ....+++|++|++++|.+++.+|..+..++ +|++|++++|++++ .+|..+..+++|+.|++++|.
T Consensus 344 ~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 344 IHMV--------CPPSPSSFTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp CCCC--------CCSSCCCCCEEECCSSCCCTTTTTTCCSCS-SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred cccc--------CccCCCCceEEECCCCccccchhhhhcccC-CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 3211 115788999999999999988888888776 99999999999986 335668899999999999999
Q ss_pred Cccccch-hhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 381 LSGSVPE-VIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 381 l~~~~~~-~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
+++.+|. .+..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~ 490 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPD 490 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCT
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCH
Confidence 9985665 477889999999999999987776654 79999999999998 78888889999999999999998 7876
Q ss_pred C
Q 037538 460 E 460 (461)
Q Consensus 460 ~ 460 (461)
+
T Consensus 491 ~ 491 (562)
T 3a79_B 491 G 491 (562)
T ss_dssp T
T ss_pred H
Confidence 4
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.5e-37 Score=304.15 Aligned_cols=334 Identities=18% Similarity=0.191 Sum_probs=247.5
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|+++++.+.+. | .+..+++|++|++++|.+++ +| +..+++|++|++++|.+++ ++ ++++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEEC
Confidence 6789999999999864 4 68999999999999999986 44 8899999999999999985 44 889999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhh
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (461)
++|++++ ++ ++.+++|++|++++|.+++ + .++++++|++|++++|...+.+ .+..+++|++|++++|.+..+
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 9999986 44 8899999999999999996 3 3788999999999999766666 478899999999999988765
Q ss_pred c-cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhh
Q 037538 238 G-LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316 (461)
Q Consensus 238 ~-~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 316 (461)
. ..+++|+.|++++|.+++. .+..+++|++|++++|.+++ +| +..+++|+.|++++|++++.+.
T Consensus 186 ~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~--------- 250 (457)
T 3bz5_A 186 DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV--------- 250 (457)
T ss_dssp CCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC---------
T ss_pred ccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH---------
Confidence 4 4578899999999999875 37888999999999999987 45 7889999999999999987542
Q ss_pred cCCCCCC----------EEEccCCcCccccchHHHhccccccEEEccCCcCcccCchh--------hhcCCCCCeeeccc
Q 037538 317 ANCTSLE----------VLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVG--------IENLVNLSLLGLEG 378 (461)
Q Consensus 317 ~~~~~L~----------~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~--------~~~l~~L~~L~Ls~ 378 (461)
..+++|+ .|++++|.+.+.+|. ..++ +|+.|++++|...+.+|.. +.++++|+.|++++
T Consensus 251 ~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~~l~-~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 251 STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--EGCR-KIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN 327 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--TTCT-TCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT
T ss_pred HHCCCCCEEeccCCCCCEEECCCCccCCcccc--cccc-cCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC
Confidence 2334444 444445544444442 2222 5666666666554444421 33345555555555
Q ss_pred CcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCC
Q 037538 379 NNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 379 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
|++++. + ++.+++|+.|++++|++++ ++.|..|++++|.+.|. .++..|+.+++++|+++|.||
T Consensus 328 N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 328 TELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp CCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred Cccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence 555542 2 5555556666666555553 13344445555555543 234567888999999999999
Q ss_pred CCC
Q 037538 459 KEV 461 (461)
Q Consensus 459 ~~~ 461 (461)
.++
T Consensus 392 ~~~ 394 (457)
T 3bz5_A 392 PDL 394 (457)
T ss_dssp TTC
T ss_pred hhH
Confidence 753
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.6e-36 Score=310.48 Aligned_cols=352 Identities=16% Similarity=0.164 Sum_probs=240.8
Q ss_pred CCCCCCCCCCCCCCCcc----eeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCC
Q 037538 51 DPLQIMSSWNDSVHFCN----WVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQ 126 (461)
Q Consensus 51 ~~~~~~~~w~~~~~~c~----w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 126 (461)
+.+..++.|.++.+||. |.++.|+. .++-........+ .-..+++++.+++++|.+....+..+..++
T Consensus 4 ~~~~~l~~~~~~~~C~~~~~~~~c~~~~~------~i~~~~~~~~~~~--~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~ 75 (597)
T 3oja_B 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDV------HIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRKLPAALLDSFR 75 (597)
T ss_dssp -------CCCSEECCCCC--CCSEEECSC------EECSSCCCCEESC--SSGGGCCCSEEEESSCEESEECTHHHHHCC
T ss_pred cccccccCCCCCCcCcccCcCceeEecCc------eecccccccccCc--ccccCCCceEEEeeCCCCCCcCHHHHccCC
Confidence 34455788988777764 55444431 1111111111111 122467889999999988865555678889
Q ss_pred CCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECc
Q 037538 127 KLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLA 206 (461)
Q Consensus 127 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (461)
+|++|++++|.+++..|..|+.+++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..+.++++|++|+++
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 99999999999987777789999999999999999988777788899999999999999885555556889999999999
Q ss_pred cCCCcccCChhhhcCCCCcEEecCCCCchhhc-cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCcc
Q 037538 207 RNNLHGSIPNELGQLSALGFFTLYENFISDVG-LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN 285 (461)
Q Consensus 207 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 285 (461)
+|.+.+..|..++.+++|++|++++|.+..+. ..+++|+.+++++|.+++ +...++|++|++++|.+....+..
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~ 230 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV 230 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc
Confidence 99998888888888888888888888776543 336677777777776654 334456777777777776443321
Q ss_pred CCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhh
Q 037538 286 FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI 365 (461)
Q Consensus 286 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 365 (461)
.++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..++ +|++|++++|.+++ +|..+
T Consensus 231 ---~~~L~~L~L~~n~l~~~--------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~-l~~~~ 297 (597)
T 3oja_B 231 ---NVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRLVA-LNLYG 297 (597)
T ss_dssp ---CSCCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEEESGGGTTCS-SCCEEECTTSCCCE-EECSS
T ss_pred ---CCCCCEEECCCCCCCCC--------hhhccCCCCCEEECCCCccCCCCHHHhcCcc-CCCEEECCCCCCCC-CCccc
Confidence 25677777777776641 3456667777777777777766666666665 67777777777665 34455
Q ss_pred hcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeeccccccccc
Q 037538 366 ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGS 432 (461)
Q Consensus 366 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 432 (461)
..+++|+.|+|++|.+. .+|..+..+++|++|++++|.+++. + +..+++|+.|++++|++.+.
T Consensus 298 ~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 298 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 55667777777777766 5566666667777777777776643 2 44556677777777766543
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.5e-36 Score=310.75 Aligned_cols=366 Identities=18% Similarity=0.192 Sum_probs=285.7
Q ss_pred ccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcC
Q 037538 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLIS 172 (461)
Q Consensus 93 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 172 (461)
.+|..+. +.+++|+|++|+|++..+.+|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 5666553 57999999999999777788999999999999999999777778999999999999999999777778999
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcc-cCChhhhcCCCCcEEecCCCCchhhcc-------CCC-C
Q 037538 173 LTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG-SIPNELGQLSALGFFTLYENFISDVGL-------TLP-N 243 (461)
Q Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~-------~l~-~ 243 (461)
+++|++|++++|++++..+..++++++|++|++++|.+.+ ..|..++.+++|++|++++|.+..+.. .++ .
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 9999999999999997666779999999999999999975 467889999999999999998854320 000 0
Q ss_pred -----------------------CcEEEccCccCccc-------------------------------------------
Q 037538 244 -----------------------LKIFAGGVNYFTGS------------------------------------------- 257 (461)
Q Consensus 244 -----------------------L~~L~l~~n~~~~~------------------------------------------- 257 (461)
++.+++..|.....
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 11222222211000
Q ss_pred -------------------------------------cChhhcCCCCCCEEEcccccccccCCc----------------
Q 037538 258 -------------------------------------IPVSLSNASNLQVLDFAENGLTGTIPE---------------- 284 (461)
Q Consensus 258 -------------------------------------~~~~l~~~~~L~~L~l~~n~l~~~~~~---------------- 284 (461)
....+.....++.|++.+|.+.+..+.
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSC
T ss_pred hhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCC
Confidence 000122345677888888766543222
Q ss_pred ---cCCCCCCCCEEEcccCcCcccCCCC-------------------chhhhhhcCCCCCCEEEccCCcCccccchH-HH
Q 037538 285 ---NFGSLKDLVRLNFDQNELGSREIGD-------------------LNFLKFLANCTSLEVLGLAQNGFGGEMPIS-IA 341 (461)
Q Consensus 285 ---~~~~l~~L~~L~L~~n~l~~~~~~~-------------------~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~-~~ 341 (461)
....+++|+.++++.|.+....... ......+..+++|+.++++.++.....+.. +.
T Consensus 363 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 442 (635)
T 4g8a_A 363 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 442 (635)
T ss_dssp CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred CCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccc
Confidence 2235788999999999876432110 011233455677777777777665444433 33
Q ss_pred hccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCc-cccchhhhcCCCCCeeccccccCcccCChhhhcCccCC
Q 037538 342 NLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLS-GSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLS 420 (461)
Q Consensus 342 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 420 (461)
.+. +++.++++.|.+.+..+..+..+++++.|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++++|+
T Consensus 443 ~l~-~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 443 SLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp TCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccc-ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 444 8999999999999988888999999999999999865 45778899999999999999999999999999999999
Q ss_pred eeecccccccccCCccCCCCCCCCEEEccCCCCcccCCCCC
Q 037538 421 RLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461 (461)
Q Consensus 421 ~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~~~ 461 (461)
.|+|++|+|++..|..+.++++|++|++++|++++..|+++
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 99999999998888899999999999999999998877653
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.9e-36 Score=300.15 Aligned_cols=314 Identities=18% Similarity=0.168 Sum_probs=272.5
Q ss_pred eeeEEecCC---------CCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCC
Q 037538 68 WVGVTCSPS---------NGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL 138 (461)
Q Consensus 68 w~gv~c~~~---------~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l 138 (461)
|..+.|... ...++.|++++|.+.+..+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 456666532 25789999999999988888999999999999999999988899999999999999999999
Q ss_pred CCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhh
Q 037538 139 SGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNEL 218 (461)
Q Consensus 139 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 218 (461)
++..+..|.++++|++|++++|++.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 96555678999999999999999998888999999999999999999998888899999999999999999986555566
Q ss_pred hcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcc
Q 037538 219 GQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFD 298 (461)
Q Consensus 219 ~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 298 (461)
..+++| +.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|+.|+++
T Consensus 173 ~~l~~L--------------------~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 173 SHLHGL--------------------IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp TTCTTC--------------------CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred cccCCC--------------------cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 665554 455555556666666788899999999999998888888877777899999999
Q ss_pred cCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeeccc
Q 037538 299 QNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEG 378 (461)
Q Consensus 299 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~ 378 (461)
+|+++. .....+..+++|+.|++++|.+++..+..+..++ +|++|++++|.+++..|..+..+++|+.|++++
T Consensus 233 ~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 233 HCNLTA------VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp SSCCCS------CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT-TCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred CCcccc------cCHHHhcCccccCeeECCCCcCCccChhhccccc-cCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence 999986 2235678899999999999999976666677776 999999999999998899999999999999999
Q ss_pred CcCccccchhhhcCCCCCeeccccccCccc
Q 037538 379 NNLSGSVPEVIGRLNKLEGLELNANKFSGF 408 (461)
Q Consensus 379 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 408 (461)
|.+++..+..|..+++|+.|++++|++.+.
T Consensus 306 N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 306 NQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp SCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 999987777889999999999999999743
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.3e-35 Score=292.50 Aligned_cols=326 Identities=26% Similarity=0.355 Sum_probs=279.8
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcE
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEI 178 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 178 (461)
..+++++.|+++++.+. .+|. +..+++|++|++++|.+++. +. +.++++|++|++++|.+.+..+ ++++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 34689999999999987 4664 88899999999999999854 44 8999999999999999986544 999999999
Q ss_pred EEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchh--hccCCCCCcEEEccCccCcc
Q 037538 179 IRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD--VGLTLPNLKIFAGGVNYFTG 256 (461)
Q Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~l~~L~~L~l~~n~~~~ 256 (461)
|++++|.+.+. +. +.++++|++|++++|.+.+ ++ .+..+++|++|++++ .+.. ....+++|+.|++++|.+++
T Consensus 117 L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 117 LTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp EECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCchhhccCCCCCEEECcCCcCCC
Confidence 99999999854 33 8899999999999999985 33 589999999999974 3322 13568999999999999876
Q ss_pred ccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCcccc
Q 037538 257 SIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEM 336 (461)
Q Consensus 257 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~ 336 (461)
. ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|++++. ..+..+++|+.|++++|.+++..
T Consensus 192 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 192 I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--------GTLASLTNLTDLDLANNQISNLA 259 (466)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCCG
T ss_pred C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--------hhhhcCCCCCEEECCCCccccch
Confidence 4 358899999999999999987655 77899999999999998763 35678999999999999998655
Q ss_pred chHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcC
Q 037538 337 PISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNL 416 (461)
Q Consensus 337 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l 416 (461)
+ +..++ +|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..| +..+
T Consensus 260 ~--~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l 330 (466)
T 1o6v_A 260 P--LSGLT-KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSL 330 (466)
T ss_dssp G--GTTCT-TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred h--hhcCC-CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccC
Confidence 4 55665 99999999999987544 8899999999999999996544 7899999999999999997665 7899
Q ss_pred ccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCC
Q 037538 417 TVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 417 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
++|+.|++++|++++. ..+.++++|+.|++++|++++.+|
T Consensus 331 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 331 TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 9999999999999975 578999999999999999998766
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2e-34 Score=277.72 Aligned_cols=305 Identities=26% Similarity=0.387 Sum_probs=182.0
Q ss_pred CCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEE
Q 037538 100 NLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEII 179 (461)
Q Consensus 100 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 179 (461)
.+++|++|+++++.+. .++. +..+++|++|++++|.++ .++. +..+++|++|++++|.++. + +.+.++++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccc-cchh-hhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEE
Confidence 3455555555555554 2332 445555555555555554 2222 5555555555555555543 2 235555555555
Q ss_pred EccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccC
Q 037538 180 RLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIP 259 (461)
Q Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~ 259 (461)
++++|.+.+ ++. +..+++|++|++++|.....++ .+..+++|++|++++|.+.. ..+
T Consensus 116 ~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~--------------------~~~ 172 (347)
T 4fmz_A 116 YLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD--------------------VTP 172 (347)
T ss_dssp ECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC--------------------CGG
T ss_pred ECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC--------------------chh
Confidence 555555553 222 4555555555555554432222 24444444444444333221 111
Q ss_pred hhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchH
Q 037538 260 VSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPIS 339 (461)
Q Consensus 260 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~ 339 (461)
+..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.+.. .+..+++|++|++++|.+++..+
T Consensus 173 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--------~~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 173 --IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT--------PVANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp --GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--------GGGGCTTCCEEECCSSCCCCCGG--
T ss_pred --hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCc--------hhhcCCcCCEEEccCCccCCCcc--
Confidence 4455566666666665553322 555666666666666665421 14556677777777776664332
Q ss_pred HHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccC
Q 037538 340 IANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVL 419 (461)
Q Consensus 340 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 419 (461)
+..++ +|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++++..+..+..+++|
T Consensus 239 ~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 239 LANLS-QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp GTTCT-TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred hhcCC-CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 44444 777777777777642 3577788888888888888753 357788888888888888888888888888889
Q ss_pred CeeecccccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 420 SRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 420 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
+.|++++|++++..| +..+++|+.|++++|+|+
T Consensus 314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999998886655 778888999999998875
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.7e-34 Score=279.62 Aligned_cols=310 Identities=17% Similarity=0.177 Sum_probs=269.3
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.+++.++++++.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 57889999999887554455788999999999999999777778999999999999999999877888999999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhh
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (461)
++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.+++++|.+..+
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc
Confidence 99999854444578999999999999999987788899999999999999999854 367889999999999999876
Q ss_pred ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhc
Q 037538 238 GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA 317 (461)
Q Consensus 238 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 317 (461)
.. .+.|+.+++++|.+... |. ...++|++|++++|.+++. ..+..+++|++|++++|.+++ ..+..+.
T Consensus 202 ~~-~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~------~~~~~~~ 269 (390)
T 3o6n_A 202 AI-PIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK------IMYHPFV 269 (390)
T ss_dssp EC-CSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE------EESGGGT
T ss_pred CC-CCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC------cChhHcc
Confidence 54 67899999999998764 32 2347999999999999864 578999999999999999987 4567788
Q ss_pred CCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCe
Q 037538 318 NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEG 397 (461)
Q Consensus 318 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~ 397 (461)
.+++|+.|++++|++++ ++..+..++ +|++|++++|.++ .+|..+..+++|+.|++++|.++.. + +..+++|+.
T Consensus 270 ~l~~L~~L~L~~n~l~~-~~~~~~~l~-~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~ 343 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVA-LNLYGQPIP-TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 343 (390)
T ss_dssp TCSSCCEEECCSSCCCE-EECSSSCCT-TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred ccccCCEEECCCCcCcc-cCcccCCCC-CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCE
Confidence 99999999999999984 555555555 9999999999998 5677788999999999999999854 3 678899999
Q ss_pred eccccccCccc
Q 037538 398 LELNANKFSGF 408 (461)
Q Consensus 398 L~L~~n~l~~~ 408 (461)
|++++|++.+.
T Consensus 344 L~l~~N~~~~~ 354 (390)
T 3o6n_A 344 LTLSHNDWDCN 354 (390)
T ss_dssp EECCSSCEEHH
T ss_pred EEcCCCCccch
Confidence 99999999854
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.5e-34 Score=286.37 Aligned_cols=304 Identities=20% Similarity=0.181 Sum_probs=219.6
Q ss_pred ccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcC
Q 037538 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLIS 172 (461)
Q Consensus 93 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 172 (461)
..+..+.++++|++|++++|.+++ +| .+..+++|++|++++|++++ +| ++.+++|++|++++|.+++. + +++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred ccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 334467789999999999999985 45 68999999999999999985 44 88999999999999999874 3 889
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCC-chhh-ccCCCCCcEEEcc
Q 037538 173 LTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENF-ISDV-GLTLPNLKIFAGG 250 (461)
Q Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~-~~~l~~L~~L~l~ 250 (461)
+++|++|++++|.+++ ++ +.++++|++|++++|.+++. + ++.+++|++|++++|. +..+ ...+++|+.|+++
T Consensus 105 l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS 178 (457)
T ss_dssp CTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECC
T ss_pred CCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECC
Confidence 9999999999999996 44 88999999999999999963 3 8889999999999984 3332 2457888999999
Q ss_pred CccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCC
Q 037538 251 VNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQN 330 (461)
Q Consensus 251 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n 330 (461)
+|.+++ +| +..+++|++|++++|.+++. .+..+++|++|++++|++++. + +..+++|+.|++++|
T Consensus 179 ~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-------p--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 179 FNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-------D--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp SSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-------C--CTTCTTCSEEECCSS
T ss_pred CCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-------C--ccccCCCCEEEeeCC
Confidence 998887 44 77888899999999888865 377888899999999888763 1 567788899999998
Q ss_pred cCccccchHHHhcc------ccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchh--------hhcCCCCC
Q 037538 331 GFGGEMPISIANLS------THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEV--------IGRLNKLE 396 (461)
Q Consensus 331 ~~~~~~~~~~~~~~------~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--------l~~~~~L~ 396 (461)
.+++..+..+..+. .+|+.+++++|.+.+.+| +..+++|+.|++++|...+.+|.. +.++++|+
T Consensus 244 ~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 244 PLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLV 321 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred cCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCC
Confidence 88865433222111 023344444444444444 345566666666666655554431 22334444
Q ss_pred eeccccccCcccCChhhhcCccCCeeeccccccc
Q 037538 397 GLELNANKFSGFMPSSLGNLTVLSRLLMEENRFE 430 (461)
Q Consensus 397 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 430 (461)
+|++++|++++. .++.+++|+.|++++|+++
T Consensus 322 ~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 322 YLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp EEECTTCCCSCC---CCTTCTTCSEEECCSSCCC
T ss_pred EEECCCCccccc---ccccCCcCcEEECCCCCCC
Confidence 555555555442 1444455555555555444
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1e-33 Score=292.20 Aligned_cols=311 Identities=16% Similarity=0.175 Sum_probs=272.4
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.+++.++++++.+....+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..|+++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 46788999999887665666788999999999999999888889999999999999999999888888999999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhh
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (461)
++|.+++..+..|+++++|++|++++|.+++..|..+..+++|++|++++|.+++. .++.+++|+.|++++|.+..+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc
Confidence 99999966556679999999999999999988888899999999999999999864 367789999999999999876
Q ss_pred ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhc
Q 037538 238 GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA 317 (461)
Q Consensus 238 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 317 (461)
.. .+.|+.|++++|.++...+. + .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+ ..+..+.
T Consensus 208 ~~-~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~------~~~~~~~ 275 (597)
T 3oja_B 208 AI-PIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK------IMYHPFV 275 (597)
T ss_dssp EC-CTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE------EESGGGT
T ss_pred cC-CchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC------CCHHHhc
Confidence 54 67899999999998754332 2 3689999999999986 4778999999999999999987 5567788
Q ss_pred CCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCe
Q 037538 318 NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEG 397 (461)
Q Consensus 318 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~ 397 (461)
.+++|+.|++++|.+++ +|..+..++ +|++|++++|.++ .+|..+..+++|+.|++++|.+++. + +..+++|+.
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~-~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~ 349 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIP-TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 349 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCT-TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred CccCCCEEECCCCCCCC-CCcccccCC-CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCE
Confidence 99999999999999985 565555555 9999999999998 5788889999999999999999854 3 677899999
Q ss_pred eccccccCcccC
Q 037538 398 LELNANKFSGFM 409 (461)
Q Consensus 398 L~L~~n~l~~~~ 409 (461)
|++++|++.+..
T Consensus 350 L~l~~N~~~~~~ 361 (597)
T 3oja_B 350 LTLSHNDWDCNS 361 (597)
T ss_dssp EECCSSCEEHHH
T ss_pred EEeeCCCCCChh
Confidence 999999998653
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.1e-33 Score=267.91 Aligned_cols=303 Identities=25% Similarity=0.367 Sum_probs=233.7
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|+++++.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++ .+..+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEEC
Confidence 678999999999864 44 48899999999999999984 555 9999999999999999984 44 6899999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhh
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (461)
++|.+.+. +. +..+++|++|++++|.....+ ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+..+
T Consensus 118 ~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 118 NEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp TTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred cCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence 99998854 33 889999999999999766444 448899999999999999985433 77777777777776655432
Q ss_pred ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhc
Q 037538 238 GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA 317 (461)
Q Consensus 238 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 317 (461)
. . +..+++|+++++++|.+.+..+ +..+++|++|++++|++++.. . +.
T Consensus 193 ~---------------------~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-------~-~~ 240 (347)
T 4fmz_A 193 S---------------------P-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-------P-LA 240 (347)
T ss_dssp G---------------------G-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-------G-GT
T ss_pred c---------------------c-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc-------c-hh
Confidence 1 1 5566777777777777665433 666777777777777776521 1 56
Q ss_pred CCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCe
Q 037538 318 NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEG 397 (461)
Q Consensus 318 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~ 397 (461)
.+++|++|++++|.+++ + ..+..++ +|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|+.
T Consensus 241 ~l~~L~~L~l~~n~l~~-~-~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISD-I-NAVKDLT-KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp TCTTCCEEECCSSCCCC-C-GGGTTCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred cCCCCCEEECCCCccCC-C-hhHhcCC-CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 67777778887777764 2 2344444 788888888887753 35778888999999999888888888888899999
Q ss_pred eccccccCcccCChhhhcCccCCeeeccccccc
Q 037538 398 LELNANKFSGFMPSSLGNLTVLSRLLMEENRFE 430 (461)
Q Consensus 398 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 430 (461)
|++++|++++..| +..+++|+.|++++|+|+
T Consensus 316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999886555 778889999999998875
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.2e-33 Score=279.37 Aligned_cols=325 Identities=22% Similarity=0.303 Sum_probs=161.6
Q ss_pred cEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcc
Q 037538 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEAS 158 (461)
Q Consensus 79 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 158 (461)
+++.|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|++++ +| .++++++|++|+++
T Consensus 92 ~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 92 HLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp TCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence 44555555555543 3321 2455555555555542 2210 1355555555555553 44 35555555555555
Q ss_pred CCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhc
Q 037538 159 ANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG 238 (461)
Q Consensus 159 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 238 (461)
+|++++ +|.. ..+|++|++++|.+++ +| .+.++++|++|++++|.+++ +|.. .++|++|++++|.+..+.
T Consensus 162 ~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~~lp 231 (454)
T 1jl5_A 162 NNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILEELP 231 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSSCC
T ss_pred CCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCCccc
Confidence 555543 3322 1355555555555553 33 34555555555555555543 2221 134555555555443322
Q ss_pred --cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhh
Q 037538 239 --LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316 (461)
Q Consensus 239 --~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 316 (461)
..+++|+.|++++|.+++ +|.. .++|++|++++|.+++ +|.. +++|++|++++|++++.+.
T Consensus 232 ~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~--------- 294 (454)
T 1jl5_A 232 ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE--------- 294 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC---------
T ss_pred ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccC---------
Confidence 234455555555555543 2221 2455555555555543 2221 2456666666665554210
Q ss_pred cCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCC
Q 037538 317 ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLE 396 (461)
Q Consensus 317 ~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~ 396 (461)
-.++|+.|++++|.+++ ++ ..+++|++|++++|++++ +|.. +++|+.|++++|.++ .+|. .+++|+
T Consensus 295 -~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~ 360 (454)
T 1jl5_A 295 -LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLK 360 (454)
T ss_dssp -CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred -cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhcc
Confidence 11567777777777764 22 233489999999999986 5643 589999999999999 5676 478999
Q ss_pred eeccccccCcc--cCChhhhcC-------------ccCCeeecccccccc--cCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 397 GLELNANKFSG--FMPSSLGNL-------------TVLSRLLMEENRFEG--SIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 397 ~L~L~~n~l~~--~~~~~~~~l-------------~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
+|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|. +++.|.+.+|.+.+.+|.
T Consensus 361 ~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp EEECCSSCCSSCCCCCTTCCEEECCC------------------------------------------------------
T ss_pred EEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCcccc
Confidence 99999999998 788888887 889999999999997 6665 456678899999888774
Q ss_pred C
Q 037538 460 E 460 (461)
Q Consensus 460 ~ 460 (461)
+
T Consensus 435 ~ 435 (454)
T 1jl5_A 435 A 435 (454)
T ss_dssp -
T ss_pred C
Confidence 3
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.4e-36 Score=302.63 Aligned_cols=376 Identities=17% Similarity=0.103 Sum_probs=298.2
Q ss_pred CcEEEEEcCCCCcccccCcc-ccCCCCCCEEecCCCCCcc----cCchhccCCCCCCEEeCCCCCCCCCCCcCC-CCCC-
Q 037538 78 GRVTVLKLESKQLVGSIPAS-IGNLTNLTGINLFQNRFHG----QIPEEIGRLQKLQDLNLTYNYLSGKIPTNL-SHCT- 150 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~-l~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~- 150 (461)
.++++|+++++.+....... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46899999999987554333 6789999999999999875 356778889999999999999875333222 2344
Q ss_pred ---CCCEEEccCCcCCC----cCchhhcCCCCCcEEEccCCCCcccCCccC-----CCCCCCCEEECccCCCcccC----
Q 037538 151 ---ELRSFEASANDFIG----QIPDQLISLTKLEIIRLGTSNLTGNIPAWV-----GNFSSLQVLLLARNNLHGSI---- 214 (461)
Q Consensus 151 ---~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~---- 214 (461)
+|++|++++|.+.. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999884 568889999999999999999875443322 23568999999999998643
Q ss_pred ChhhhcCCCCcEEecCCCCchhhc---------cCCCCCcEEEccCccCccc----cChhhcCCCCCCEEEccccccccc
Q 037538 215 PNELGQLSALGFFTLYENFISDVG---------LTLPNLKIFAGGVNYFTGS----IPVSLSNASNLQVLDFAENGLTGT 281 (461)
Q Consensus 215 ~~~l~~l~~L~~L~l~~n~l~~~~---------~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~ 281 (461)
+..+..+++|++|++++|.+.... ...++|+.|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 566778899999999999985432 2366999999999999874 577788899999999999998764
Q ss_pred C-----CccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhc----cccccEEEc
Q 037538 282 I-----PENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANL----STHLRILTM 352 (461)
Q Consensus 282 ~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~----~~~L~~L~l 352 (461)
. +..+..+++|++|++++|.++..... .++..+..+++|++|++++|.+++..+..+... .++|++|++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCG--DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 3 23344689999999999999863211 256778889999999999999986655555443 248999999
Q ss_pred cCCcCccc----CchhhhcCCCCCeeecccCcCccccchhhhc-----CCCCCeeccccccCcc----cCChhhhcCccC
Q 037538 353 GYNLMHGN----IPVGIENLVNLSLLGLEGNNLSGSVPEVIGR-----LNKLEGLELNANKFSG----FMPSSLGNLTVL 419 (461)
Q Consensus 353 ~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-----~~~L~~L~L~~n~l~~----~~~~~~~~l~~L 419 (461)
++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++|++++ .+|..+..+++|
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 99999865 5666778899999999999998765655543 6799999999999996 788899999999
Q ss_pred CeeecccccccccCCcc----C-CCCCCCCEEEccCCCCcc
Q 037538 420 SRLLMEENRFEGSIPPS----L-GNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 420 ~~L~l~~n~l~~~~p~~----l-~~l~~L~~L~ls~N~l~~ 455 (461)
+.|++++|++++..... + .....|+.|++.++.+..
T Consensus 401 ~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred cEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 99999999998652222 2 124568888888887754
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.8e-34 Score=274.02 Aligned_cols=272 Identities=21% Similarity=0.288 Sum_probs=167.3
Q ss_pred ccccCcHHHHHHHHHHHhcCCCCCCCCCCCC----CCCCCCcceeeEEecC--------CCCcEEEEEcCCCCcccccCc
Q 037538 29 LESATIEADKLALLDFKNHLTQDPLQIMSSW----NDSVHFCNWVGVTCSP--------SNGRVTVLKLESKQLVGSIPA 96 (461)
Q Consensus 29 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w----~~~~~~c~w~gv~c~~--------~~~~v~~L~l~~~~l~~~~~~ 96 (461)
+...+..+++.||++||..+..++.+....| ....++|.|.|+.|.. ...+|+.|+++++.+. .+|.
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred eccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 4556778899999999998866776667788 4567899999999952 2256777777777776 6666
Q ss_pred cccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcC----
Q 037538 97 SIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLIS---- 172 (461)
Q Consensus 97 ~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~---- 172 (461)
.+.++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+|..++.
T Consensus 99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 6777777777777777777 67777777777777777777776 66777777777777777777666666665543
Q ss_pred -----CCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEE
Q 037538 173 -----LTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIF 247 (461)
Q Consensus 173 -----l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L 247 (461)
+++|++|++++|.++ .+|..+.++++|++|++++|.+++ +|.
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~------------------------------- 223 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGP------------------------------- 223 (328)
T ss_dssp CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCG-------------------------------
T ss_pred hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cch-------------------------------
Confidence 555555555555554 444445555555555555555442 333
Q ss_pred EccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEc
Q 037538 248 AGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGL 327 (461)
Q Consensus 248 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L 327 (461)
.+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+ .++..+.++++|+.|++
T Consensus 224 -------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~------~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 224 -------------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL------TLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp -------------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC------BCCTTGGGCTTCCEEEC
T ss_pred -------------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh------hcchhhhcCCCCCEEeC
Confidence 34444444444444444444444444445555555555544443 33333444555555555
Q ss_pred cCCcCccccchHHHhccccccEEEccCCc
Q 037538 328 AQNGFGGEMPISIANLSTHLRILTMGYNL 356 (461)
Q Consensus 328 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 356 (461)
++|.+.+.+|..+..++ +++.+++..+.
T Consensus 285 ~~n~~~~~iP~~l~~L~-~L~~l~l~~~~ 312 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLP-ANCIILVPPHL 312 (328)
T ss_dssp TTCTTCCCCCGGGGGSC-TTCEEECCGGG
T ss_pred CCCCchhhccHHHhhcc-CceEEeCCHHH
Confidence 55555555555555554 45555554443
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.2e-33 Score=267.97 Aligned_cols=252 Identities=29% Similarity=0.502 Sum_probs=179.7
Q ss_pred CCCCEEEccCCcCCC--cCchhhcCCCCCcEEEccC-CCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcE
Q 037538 150 TELRSFEASANDFIG--QIPDQLISLTKLEIIRLGT-SNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGF 226 (461)
Q Consensus 150 ~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 226 (461)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-------- 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-------- 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--------
Confidence 456677777777766 6666777777777777764 66666666666666666666666666665555444
Q ss_pred EecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccC
Q 037538 227 FTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSRE 306 (461)
Q Consensus 227 L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 306 (461)
.++++|++|++++|.+++.+|..+..+++|++|++++|++++
T Consensus 122 ------------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-- 163 (313)
T 1ogq_A 122 ------------------------------------SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG-- 163 (313)
T ss_dssp ------------------------------------GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE--
T ss_pred ------------------------------------hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC--
Confidence 444455555555555555555555555555555555555544
Q ss_pred CCCchhhhhhcCCC-CCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCcccc
Q 037538 307 IGDLNFLKFLANCT-SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSV 385 (461)
Q Consensus 307 ~~~~~~~~~l~~~~-~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 385 (461)
.++..+..++ +|+.|++++|.+++.+|..+..+ .|++|++++|.+++..|..+..+++|+.|++++|.+++.+
T Consensus 164 ----~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 164 ----AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp ----ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred ----cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC--cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence 3344445555 67777777777776777777666 3888888888888778888888888888888888888666
Q ss_pred chhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCC-Ccc
Q 037538 386 PEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNN-LNG 455 (461)
Q Consensus 386 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~-l~~ 455 (461)
|. +..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|.. .++++|+.+++++|+ +.|
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 65 777888999999999988888888888889999999999998888886 778888889999988 555
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.5e-32 Score=259.44 Aligned_cols=289 Identities=18% Similarity=0.206 Sum_probs=186.0
Q ss_pred CCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEcc
Q 037538 103 NLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLG 182 (461)
Q Consensus 103 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 182 (461)
+++.++++++.++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+++..|..++++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5667777776665 4554432 466777777777665555566666777777777766666556666666666666666
Q ss_pred CCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhh
Q 037538 183 TSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSL 262 (461)
Q Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l 262 (461)
+|.++ .+|..+. ++|++|++++|.+.+..+. .+
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~--------------------------------------------~~ 141 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKS--------------------------------------------VF 141 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHH--------------------------------------------HH
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHh--------------------------------------------Hh
Confidence 66665 3444332 4566666666655543333 34
Q ss_pred cCCCCCCEEEcccccccc--cCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHH
Q 037538 263 SNASNLQVLDFAENGLTG--TIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISI 340 (461)
Q Consensus 263 ~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~ 340 (461)
..+++|++|++++|.+.. ..+..+..+++|++|++++|.++..+. .+ .++|++|++++|.+++..+..+
T Consensus 142 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-------~~--~~~L~~L~l~~n~l~~~~~~~~ 212 (330)
T 1xku_A 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-------GL--PPSLTELHLDGNKITKVDAASL 212 (330)
T ss_dssp TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-------SC--CTTCSEEECTTSCCCEECTGGG
T ss_pred cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-------cc--cccCCEEECCCCcCCccCHHHh
Confidence 444555555555554432 344455555556666665555553221 11 1567777777777766556666
Q ss_pred HhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhc-----
Q 037538 341 ANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGN----- 415 (461)
Q Consensus 341 ~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~----- 415 (461)
..++ +|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 213 ~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~ 290 (330)
T 1xku_A 213 KGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290 (330)
T ss_dssp TTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred cCCC-CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccc
Confidence 6665 7777777777777766667778888888888888887 67777888888888888888888665555543
Q ss_pred -CccCCeeecccccccc--cCCccCCCCCCCCEEEccCCC
Q 037538 416 -LTVLSRLLMEENRFEG--SIPPSLGNCKKLQVLNLSSNN 452 (461)
Q Consensus 416 -l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~ls~N~ 452 (461)
.+.++.+++++|++.. ..|..+..+..++.+++++|+
T Consensus 291 ~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3678889999998853 456788888999999999885
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.6e-35 Score=296.64 Aligned_cols=352 Identities=18% Similarity=0.176 Sum_probs=282.4
Q ss_pred CCCCEEecCCCCCcccCch-hccCCCCCCEEeCCCCCCCC----CCCcCCCCCCCCCEEEccCCcCCCcCchhhc-CCC-
Q 037538 102 TNLTGINLFQNRFHGQIPE-EIGRLQKLQDLNLTYNYLSG----KIPTNLSHCTELRSFEASANDFIGQIPDQLI-SLT- 174 (461)
Q Consensus 102 ~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~- 174 (461)
++|++|++++++++..... .+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5789999999999754333 37789999999999999874 3466788899999999999998765444443 355
Q ss_pred ---CCcEEEccCCCCcc----cCCccCCCCCCCCEEECccCCCcccCChhhhc-----CCCCcEEecCCCCchhh-----
Q 037538 175 ---KLEIIRLGTSNLTG----NIPAWVGNFSSLQVLLLARNNLHGSIPNELGQ-----LSALGFFTLYENFISDV----- 237 (461)
Q Consensus 175 ---~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~-----l~~L~~L~l~~n~l~~~----- 237 (461)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999984 45788999999999999999998655544433 56899999999988642
Q ss_pred ---ccCCCCCcEEEccCccCccccChhhc-----CCCCCCEEEccccccccc----CCccCCCCCCCCEEEcccCcCccc
Q 037538 238 ---GLTLPNLKIFAGGVNYFTGSIPVSLS-----NASNLQVLDFAENGLTGT----IPENFGSLKDLVRLNFDQNELGSR 305 (461)
Q Consensus 238 ---~~~l~~L~~L~l~~n~~~~~~~~~l~-----~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 305 (461)
...+++|+.|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 23468999999999998866554443 367999999999999864 466778899999999999998763
Q ss_pred CCCCchh-hhhhcCCCCCCEEEccCCcCccc----cchHHHhccccccEEEccCCcCcccCchhhhcC-----CCCCeee
Q 037538 306 EIGDLNF-LKFLANCTSLEVLGLAQNGFGGE----MPISIANLSTHLRILTMGYNLMHGNIPVGIENL-----VNLSLLG 375 (461)
Q Consensus 306 ~~~~~~~-~~~l~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~ 375 (461)
... .+ ...+..+++|+.|++++|.+++. ++..+...+ +|++|++++|.+.+..+..+... ++|++|+
T Consensus 243 ~~~--~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 243 GMA--ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHH--HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT-TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHH--HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC-CcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 211 11 22334689999999999999864 566666665 99999999999986555444432 6999999
Q ss_pred cccCcCccc----cchhhhcCCCCCeeccccccCcccCChhhhc-----CccCCeeecccccccc----cCCccCCCCCC
Q 037538 376 LEGNNLSGS----VPEVIGRLNKLEGLELNANKFSGFMPSSLGN-----LTVLSRLLMEENRFEG----SIPPSLGNCKK 442 (461)
Q Consensus 376 Ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~p~~l~~l~~ 442 (461)
+++|.+++. ++..+..+++|+.|++++|++++..+..+.. .++|+.|++++|++++ .+|..+..+++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 999999875 5677788899999999999998766665553 6899999999999997 78888889999
Q ss_pred CCEEEccCCCCccc
Q 037538 443 LQVLNLSSNNLNGT 456 (461)
Q Consensus 443 L~~L~ls~N~l~~~ 456 (461)
|+.|++++|++++.
T Consensus 400 L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 400 LRELDLSNNCLGDA 413 (461)
T ss_dssp CCEEECCSSSCCHH
T ss_pred ccEEECCCCCCCHH
Confidence 99999999999753
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.9e-32 Score=262.16 Aligned_cols=288 Identities=20% Similarity=0.203 Sum_probs=184.8
Q ss_pred CCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEcc
Q 037538 103 NLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLG 182 (461)
Q Consensus 103 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 182 (461)
+++.++++++.++ .+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4666666666665 4554442 466666666666664445556666666666666666665555666666666666666
Q ss_pred CCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhh
Q 037538 183 TSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSL 262 (461)
Q Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l 262 (461)
+|.++ .+|..+. ++|++|++++|.+.+..+ ..+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~--------------------------------------------~~~ 143 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPK--------------------------------------------GVF 143 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCS--------------------------------------------GGG
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCH--------------------------------------------hHh
Confidence 66655 3444333 455555555555553322 334
Q ss_pred cCCCCCCEEEccccccc--ccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHH
Q 037538 263 SNASNLQVLDFAENGLT--GTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISI 340 (461)
Q Consensus 263 ~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~ 340 (461)
..+++|++|++++|.++ +..+..+..+ +|+.|++++|++++.+. .+ .++|++|++++|.+++..+..+
T Consensus 144 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-------~~--~~~L~~L~l~~n~i~~~~~~~l 213 (332)
T 2ft3_A 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-------DL--PETLNELHLDHNKIQAIELEDL 213 (332)
T ss_dssp SSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-------SS--CSSCSCCBCCSSCCCCCCTTSS
T ss_pred CCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-------cc--cCCCCEEECCCCcCCccCHHHh
Confidence 44555555555555553 2344455555 66666666666554221 11 1567777777777765555556
Q ss_pred HhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhc-----
Q 037538 341 ANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGN----- 415 (461)
Q Consensus 341 ~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~----- 415 (461)
..++ +|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|..
T Consensus 214 ~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 214 LRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291 (332)
T ss_dssp TTCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred cCCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence 6655 7788888888877766667788888888888888888 77777888888888888888888666666654
Q ss_pred -CccCCeeeccccccc--ccCCccCCCCCCCCEEEccCCC
Q 037538 416 -LTVLSRLLMEENRFE--GSIPPSLGNCKKLQVLNLSSNN 452 (461)
Q Consensus 416 -l~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~ls~N~ 452 (461)
.+.|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 367889999999887 5667788889999999999885
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.6e-31 Score=253.17 Aligned_cols=286 Identities=19% Similarity=0.284 Sum_probs=197.5
Q ss_pred EEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCc
Q 037538 82 VLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAND 161 (461)
Q Consensus 82 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 161 (461)
.++++++.+. .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|.
T Consensus 35 ~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 35 VVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp EEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 4445555554 4555443 789999999999997777789999999999999999998889999999999999999999
Q ss_pred CCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcc--cCChhhhcCCCCcEEecCCCCchhhcc
Q 037538 162 FIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG--SIPNELGQLSALGFFTLYENFISDVGL 239 (461)
Q Consensus 162 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~ 239 (461)
++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+..
T Consensus 112 l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--- 185 (330)
T 1xku_A 112 LK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--- 185 (330)
T ss_dssp CS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS---
T ss_pred CC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc---
Confidence 87 5666554 799999999999997777778999999999999999863 555666666666666666554432
Q ss_pred CCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCC
Q 037538 240 TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC 319 (461)
Q Consensus 240 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~ 319 (461)
+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++.. +..+..+
T Consensus 186 ------------------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l 239 (330)
T 1xku_A 186 ------------------IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD------NGSLANT 239 (330)
T ss_dssp ------------------CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC------TTTGGGS
T ss_pred ------------------CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC------hhhccCC
Confidence 222221 56777777777776666666666666666666666665421 2233444
Q ss_pred CCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhh------cCC
Q 037538 320 TSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIG------RLN 393 (461)
Q Consensus 320 ~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~------~~~ 393 (461)
++|++|+++ +|.++ .+|..+..+++|++|++++|++++..+..|. ...
T Consensus 240 ~~L~~L~L~-------------------------~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 240 PHLRELHLN-------------------------NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp TTCCEEECC-------------------------SSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred CCCCEEECC-------------------------CCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence 445555554 44444 3444555556666666666666544333332 235
Q ss_pred CCCeeccccccCcc--cCChhhhcCccCCeeeccccc
Q 037538 394 KLEGLELNANKFSG--FMPSSLGNLTVLSRLLMEENR 428 (461)
Q Consensus 394 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 428 (461)
+++.+++++|.+.. ..|..|..++.++.+++++|+
T Consensus 294 ~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccceEeecCcccccccCccccccccceeEEEecccC
Confidence 67777777777752 455677777888888887774
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.1e-31 Score=256.92 Aligned_cols=287 Identities=20% Similarity=0.265 Sum_probs=197.4
Q ss_pred EEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccC
Q 037538 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASA 159 (461)
Q Consensus 80 v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 159 (461)
++.++++++++. .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 456777777776 5666553 7999999999999977788899999999999999999987889999999999999999
Q ss_pred CcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcc--cCChhhhcCCCCcEEecCCCCchhh
Q 037538 160 NDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG--SIPNELGQLSALGFFTLYENFISDV 237 (461)
Q Consensus 160 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (461)
|.+. .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++. ..+..+..+ +|++|++++|.+..
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 9988 5666655 899999999999997666678999999999999999863 445555444 55555555544332
Q ss_pred ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhc
Q 037538 238 GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA 317 (461)
Q Consensus 238 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 317 (461)
+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++. .+..+.
T Consensus 187 --------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~------~~~~~~ 238 (332)
T 2ft3_A 187 --------------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI------ENGSLS 238 (332)
T ss_dssp --------------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC------CTTGGG
T ss_pred --------------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC------ChhHhh
Confidence 222222 5677777777777766666666666666666666666542 122344
Q ss_pred CCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhc------
Q 037538 318 NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGR------ 391 (461)
Q Consensus 318 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~------ 391 (461)
.+++|+.|++++|+++ . +|..+..+++|+.|++++|++++..+..+..
T Consensus 239 ~l~~L~~L~L~~N~l~-~-------------------------lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 292 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS-R-------------------------VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292 (332)
T ss_dssp GCTTCCEEECCSSCCC-B-------------------------CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred CCCCCCEEECCCCcCe-e-------------------------cChhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence 4455555555555444 3 4444555555555555555555443333332
Q ss_pred CCCCCeeccccccCc--ccCChhhhcCccCCeeeccccc
Q 037538 392 LNKLEGLELNANKFS--GFMPSSLGNLTVLSRLLMEENR 428 (461)
Q Consensus 392 ~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~ 428 (461)
..+|+.|++++|.+. +..|..|..++.|+.+++++|+
T Consensus 293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 345677777777765 4556667777777777777664
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=9.8e-30 Score=245.48 Aligned_cols=286 Identities=19% Similarity=0.237 Sum_probs=179.2
Q ss_pred CCCCCCCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCC
Q 037538 58 SWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNY 137 (461)
Q Consensus 58 ~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~ 137 (461)
.|......|.|.++ |+ .++++++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 22 ~~~~~~~~C~~~~~-c~----------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 22 SSNQASLSCDRNGI-CK----------GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp -----CCEECTTSE-EE----------CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCccCCCCCCCeE-ee----------CCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 35556677888776 53 3456665 5666554 589999999999987666689999999999999999
Q ss_pred CCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCc--cCCCCCCCCEEECccCC-CcccC
Q 037538 138 LSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPA--WVGNFSSLQVLLLARNN-LHGSI 214 (461)
Q Consensus 138 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~-~~~~~ 214 (461)
+++..|..+.++++|++|++++|++++..+..+.++++|++|++++|.+.+ +|. .+.++++|++|++++|. +.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccC
Confidence 987777889999999999999999886555558889999999999998884 444 67788888888888874 44333
Q ss_pred ChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCE
Q 037538 215 PNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVR 294 (461)
Q Consensus 215 ~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 294 (461)
+..+.. +++|++|++++|.+++..|..+..+++|++
T Consensus 167 ~~~~~~--------------------------------------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 167 RKDFAG--------------------------------------------LTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp TTTTTT--------------------------------------------CCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred HHHccC--------------------------------------------CCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 333333 344444444444444444444444444444
Q ss_pred EEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHH--hccccccEEEccCCcCcc----cCchhhhcC
Q 037538 295 LNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIA--NLSTHLRILTMGYNLMHG----NIPVGIENL 368 (461)
Q Consensus 295 L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~----~~p~~~~~l 368 (461)
|++++|+++. .....+..+++|+.|++++|.+++..+..+. .....++.++++++.+.+ .+|..+..+
T Consensus 203 L~l~~n~l~~------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 203 LILHMKQHIL------LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp EEEECSCSTT------HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred ecCCCCcccc------chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence 4444444432 1111222344455555555444432222211 111245555555555543 355566777
Q ss_pred CCCCeeecccCcCccccchh-hhcCCCCCeeccccccCcccC
Q 037538 369 VNLSLLGLEGNNLSGSVPEV-IGRLNKLEGLELNANKFSGFM 409 (461)
Q Consensus 369 ~~L~~L~Ls~n~l~~~~~~~-l~~~~~L~~L~L~~n~l~~~~ 409 (461)
++|+.|++++|+++ .+|.. +..+++|++|++++|++++..
T Consensus 277 ~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 277 SGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 77777777777777 44544 467777777777777776543
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=242.40 Aligned_cols=254 Identities=18% Similarity=0.200 Sum_probs=144.7
Q ss_pred CCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecC
Q 037538 151 ELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLY 230 (461)
Q Consensus 151 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 230 (461)
+|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 44444444444443333344444444444444444444444444455555555555555543222224444444444443
Q ss_pred CCCchhhccCCCCCcEEEccCccCccccC-hhhcCCCCCCEEEcccc-cccccCCccCCCCCCCCEEEcccCcCcccCCC
Q 037538 231 ENFISDVGLTLPNLKIFAGGVNYFTGSIP-VSLSNASNLQVLDFAEN-GLTGTIPENFGSLKDLVRLNFDQNELGSREIG 308 (461)
Q Consensus 231 ~n~l~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 308 (461)
+|.+..+ .+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|++++
T Consensus 133 ~n~l~~l--------------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---- 188 (353)
T 2z80_A 133 GNPYKTL--------------------GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS---- 188 (353)
T ss_dssp TCCCSSS--------------------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE----
T ss_pred CCCCccc--------------------CchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc----
Confidence 3332211 11 24667889999999998 4666667788889999999999998876
Q ss_pred CchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhh---cCCCCCeeecccCcCcc--
Q 037538 309 DLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIE---NLVNLSLLGLEGNNLSG-- 383 (461)
Q Consensus 309 ~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~---~l~~L~~L~Ls~n~l~~-- 383 (461)
..+..+..+++|++|++++|.++ .+|..+....++|++|++++|.+++..+..+. ..+.++.++++++.+.+
T Consensus 189 --~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 189 --YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp --ECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred --cCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 34556777888888888888876 45554443334788888888887764443322 23455566666655544
Q ss_pred --ccchhhhcCCCCCeeccccccCcccCChh-hhcCccCCeeeccccccccc
Q 037538 384 --SVPEVIGRLNKLEGLELNANKFSGFMPSS-LGNLTVLSRLLMEENRFEGS 432 (461)
Q Consensus 384 --~~~~~l~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~ 432 (461)
.+|..+..+++|+.|++++|+++ .+|.. |..+++|+.|++++|++++.
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 24445555555555555555555 33333 35555555555555555543
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4e-29 Score=236.34 Aligned_cols=288 Identities=20% Similarity=0.227 Sum_probs=197.2
Q ss_pred CCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCC--
Q 037538 63 VHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG-- 140 (461)
Q Consensus 63 ~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-- 140 (461)
.+.|.|.++.|... +++ .+|..+. +++++|++++|.++...+..|..+++|++|++++|.++.
T Consensus 4 ~C~C~~~~l~c~~~------------~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 68 (306)
T 2z66_A 4 RCSCSGTEIRCNSK------------GLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68 (306)
T ss_dssp TCEEETTEEECCSS------------CCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE
T ss_pred CCeeCCCEEEcCCC------------Ccc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc
Confidence 34588988888642 232 3444332 688888998888884344457888889999998888772
Q ss_pred CCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCC-ccCCCCCCCCEEECccCCCcccCChhhh
Q 037538 141 KIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIP-AWVGNFSSLQVLLLARNNLHGSIPNELG 219 (461)
Q Consensus 141 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 219 (461)
..+..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+.
T Consensus 69 ~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 147 (306)
T 2z66_A 69 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147 (306)
T ss_dssp EEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT
T ss_pred CcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc
Confidence 23556667888999999888877 466678888999999999988885544 5678888999999999988877777777
Q ss_pred cCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEccc
Q 037538 220 QLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQ 299 (461)
Q Consensus 220 ~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 299 (461)
.+++|++|++++|.+... .+|..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 148 ~l~~L~~L~l~~n~l~~~-------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQEN-------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp TCTTCCEEECTTCEEGGG-------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred cCcCCCEEECCCCccccc-------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence 766666666666544320 2445566667777777777777766666777777777777777
Q ss_pred CcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCc--hhhhcCCCCCeeecc
Q 037538 300 NELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIP--VGIENLVNLSLLGLE 377 (461)
Q Consensus 300 n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~Ls 377 (461)
|++++.. ...+..+++|+.|++++|.+++..+..+..++++|++|++++|++++..+ .....+...+.+.+.
T Consensus 209 N~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~ 282 (306)
T 2z66_A 209 NNFFSLD------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 282 (306)
T ss_dssp SCCSBCC------SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSC
T ss_pred CccCccC------hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcc
Confidence 7776522 22355667777777777777766666666654477777777777765321 112223344455666
Q ss_pred cCcCccccchhhhc
Q 037538 378 GNNLSGSVPEVIGR 391 (461)
Q Consensus 378 ~n~l~~~~~~~l~~ 391 (461)
.+.+....|..+.+
T Consensus 283 ~~~~~C~~p~~~~g 296 (306)
T 2z66_A 283 VERMECATPSDKQG 296 (306)
T ss_dssp GGGCBEEESGGGTT
T ss_pred ccccccCCchhhCC
Confidence 66776666666554
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2e-31 Score=275.25 Aligned_cols=372 Identities=13% Similarity=0.062 Sum_probs=214.8
Q ss_pred cEEEEEcCCCCcccccCccccC-C-CCCCEEecCCCC-Ccc-cCchhccCCCCCCEEeCCCCCCCCC----CCcCCCCCC
Q 037538 79 RVTVLKLESKQLVGSIPASIGN-L-TNLTGINLFQNR-FHG-QIPEEIGRLQKLQDLNLTYNYLSGK----IPTNLSHCT 150 (461)
Q Consensus 79 ~v~~L~l~~~~l~~~~~~~l~~-l-~~L~~L~L~~n~-~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~ 150 (461)
++++|+++++.+.+..+..+.. + .+|++|++++|. +.. .++.....+++|++|++++|.+++. ++..+..++
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 192 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC
Confidence 4555555555444333333332 1 225555555543 111 1112223455555555555554432 122233445
Q ss_pred CCCEEEccCCcCC----CcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCc---ccCChhhhcCCC
Q 037538 151 ELRSFEASANDFI----GQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLH---GSIPNELGQLSA 223 (461)
Q Consensus 151 ~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~l~~l~~ 223 (461)
+|++|++++|.+. +.++..+.++++|++|++++|.+.+ ++..+.++++|++|+++..... +..+..+..+++
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 5555555555544 1223333445555555555555442 3444445555555555432211 122233444555
Q ss_pred CcEEecCCCC---chhhccCCCCCcEEEccCccCccccC-hhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEccc
Q 037538 224 LGFFTLYENF---ISDVGLTLPNLKIFAGGVNYFTGSIP-VSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQ 299 (461)
Q Consensus 224 L~~L~l~~n~---l~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 299 (461)
|+.+.++++. +......+++|++|++++|.+++... ..+..+++|++|+++++...+.++..+..+++|++|++++
T Consensus 272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 5555554432 23333456678888888877655433 3456778888888874433333344445677888888883
Q ss_pred -----------CcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEcc----CCcCccc----
Q 037538 300 -----------NELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMG----YNLMHGN---- 360 (461)
Q Consensus 300 -----------n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~----~n~l~~~---- 360 (461)
+.+++. .+......+++|+.|+++.+.+++..+..+....++|+.|+++ .|.+++.
T Consensus 352 g~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 352 GADEQGMEDEEGLVSQR-----GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp CCCSSTTSSTTCCCCHH-----HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred CccccccccccCccCHH-----HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 445431 2334455688888888888888877777776633488888886 5566642
Q ss_pred -CchhhhcCCCCCeeecccCc--Cccccchhhh-cCCCCCeeccccccCccc-CChhhhcCccCCeeeccccccccc-CC
Q 037538 361 -IPVGIENLVNLSLLGLEGNN--LSGSVPEVIG-RLNKLEGLELNANKFSGF-MPSSLGNLTVLSRLLMEENRFEGS-IP 434 (461)
Q Consensus 361 -~p~~~~~l~~L~~L~Ls~n~--l~~~~~~~l~-~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~p 434 (461)
++..+.++++|+.|++++|. +++..+..+. .+++|++|++++|++++. ++..+..+++|+.|++++|++++. ++
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 34446678888888887543 6655555554 378899999998888763 344557788899999999888755 33
Q ss_pred ccCCCCCCCCEEEccCCCCccc
Q 037538 435 PSLGNCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 435 ~~l~~l~~L~~L~ls~N~l~~~ 456 (461)
.....+++|+.|++++|++++.
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhcCccCeeECcCCcCCHH
Confidence 4445688899999999988754
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=9.7e-29 Score=235.64 Aligned_cols=232 Identities=21% Similarity=0.263 Sum_probs=113.1
Q ss_pred CCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECc
Q 037538 127 KLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLA 206 (461)
Q Consensus 127 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (461)
.+++|++++|.++ .+|..+.++++|++|++++|.+. .+|..++++++|++|++++|.++ .+|..+.++++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 3444444444443 33444444444444444444444 34444444444444444444444 344444444455555555
Q ss_pred cCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccC
Q 037538 207 RNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENF 286 (461)
Q Consensus 207 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 286 (461)
+|.+.+.+|..+... .++..+..+++|++|++++|.++ .+|..+
T Consensus 159 ~n~~~~~~p~~~~~~-----------------------------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l 202 (328)
T 4fcg_A 159 ACPELTELPEPLAST-----------------------------------DASGEHQGLVNLQSLRLEWTGIR-SLPASI 202 (328)
T ss_dssp EETTCCCCCSCSEEE-----------------------------------C-CCCEEESTTCCEEEEEEECCC-CCCGGG
T ss_pred CCCCccccChhHhhc-----------------------------------cchhhhccCCCCCEEECcCCCcC-cchHhh
Confidence 544444444332210 01112344566666666666665 455555
Q ss_pred CCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhh
Q 037538 287 GSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIE 366 (461)
Q Consensus 287 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 366 (461)
..+++|++|++++|++++ ++..+..+++|++|++++| .+.+.+|..+.
T Consensus 203 ~~l~~L~~L~L~~N~l~~-------l~~~l~~l~~L~~L~Ls~n-------------------------~~~~~~p~~~~ 250 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLSA-------LGPAIHHLPKLEELDLRGC-------------------------TALRNYPPIFG 250 (328)
T ss_dssp GGCTTCCEEEEESSCCCC-------CCGGGGGCTTCCEEECTTC-------------------------TTCCBCCCCTT
T ss_pred cCCCCCCEEEccCCCCCc-------CchhhccCCCCCEEECcCC-------------------------cchhhhHHHhc
Confidence 555555555555555542 1122334444444444444 44444444455
Q ss_pred cCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccc
Q 037538 367 NLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRF 429 (461)
Q Consensus 367 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 429 (461)
.+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|+.++++++|+.+++..+.+
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 555555555555555555555555555555555555555555555555555555555554443
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.2e-28 Score=230.10 Aligned_cols=248 Identities=20% Similarity=0.219 Sum_probs=156.5
Q ss_pred CEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCC--cCchhhcCCCCCcEEEcc
Q 037538 105 TGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIG--QIPDQLISLTKLEIIRLG 182 (461)
Q Consensus 105 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~ 182 (461)
+.++.+++.++ .+|..+. ++|++|++++|.++...+..+.++++|++|++++|.+.. ..+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 56777787777 5665443 588899999998884333457888899999999888763 336677788888888888
Q ss_pred CCCCcccCCccCCCCCCCCEEECccCCCcccCC-hhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChh
Q 037538 183 TSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP-NELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVS 261 (461)
Q Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~ 261 (461)
+|.+. .+|..+..+++|++|++++|.+.+..+ ..+..++ +|+.|++++|.+++..+..
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~--------------------~L~~L~l~~n~l~~~~~~~ 145 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR--------------------NLIYLDISHTHTRVAFNGI 145 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT--------------------TCCEEECTTSCCEECSTTT
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhcc--------------------CCCEEECCCCcCCccchhh
Confidence 88877 466667778888888888887774433 2343333 3444444444444455556
Q ss_pred hcCCCCCCEEEcccccccc-cCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHH
Q 037538 262 LSNASNLQVLDFAENGLTG-TIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISI 340 (461)
Q Consensus 262 l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~ 340 (461)
+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++ ..+..+..+++|++|++++|.+++..+..+
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC------cCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 6667777777777777765 456666667777777777766665 223344555666666666666554333333
Q ss_pred HhccccccEEEccCCcCcccCchhhhcCC-CCCeeecccCcCcc
Q 037538 341 ANLSTHLRILTMGYNLMHGNIPVGIENLV-NLSLLGLEGNNLSG 383 (461)
Q Consensus 341 ~~~~~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~ 383 (461)
..++ +|++|++++|.+++..|..+..++ +|+.|++++|.+.+
T Consensus 220 ~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 220 KCLN-SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTCT-TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cCcc-cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 3333 455555555555544444444442 45555555555543
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.7e-27 Score=221.43 Aligned_cols=226 Identities=21% Similarity=0.214 Sum_probs=172.5
Q ss_pred EEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCC
Q 037538 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAN 160 (461)
Q Consensus 81 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 160 (461)
+.++.++++++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666666665 455433 478999999999998777778899999999999999998777888999999999999999
Q ss_pred c-CCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhcc
Q 037538 161 D-FIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGL 239 (461)
Q Consensus 161 ~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 239 (461)
. +....|..+.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----- 165 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI----- 165 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-----
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-----
Confidence 7 6666678888999999999999999877778888889999999999988865555566655555555555443
Q ss_pred CCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCC
Q 037538 240 TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC 319 (461)
Q Consensus 240 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~ 319 (461)
++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++ ..+..+..+
T Consensus 166 ---------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l 224 (285)
T 1ozn_A 166 ---------------SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA------LPTEALAPL 224 (285)
T ss_dssp ---------------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC------CCHHHHTTC
T ss_pred ---------------cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc------CCHHHcccC
Confidence 33333456677788888888888877777777778888888888887775 333456677
Q ss_pred CCCCEEEccCCcCccc
Q 037538 320 TSLEVLGLAQNGFGGE 335 (461)
Q Consensus 320 ~~L~~L~L~~n~~~~~ 335 (461)
++|+.|++++|.+...
T Consensus 225 ~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 225 RALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTCCEEECCSSCEECS
T ss_pred cccCEEeccCCCccCC
Confidence 7777777777776643
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.1e-27 Score=222.08 Aligned_cols=225 Identities=22% Similarity=0.210 Sum_probs=116.8
Q ss_pred CEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCC
Q 037538 105 TGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTS 184 (461)
Q Consensus 105 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 184 (461)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666666665 445433 346666666666666544455666666666666666666555566666666666666666
Q ss_pred C-CcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhc
Q 037538 185 N-LTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLS 263 (461)
Q Consensus 185 ~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 263 (461)
. +....+..+..+++|++|++++|.+.+..+. .+.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------------------------------------~~~ 126 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG--------------------------------------------LFR 126 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT--------------------------------------------TTT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHh--------------------------------------------Hhh
Confidence 5 4443355555556666666666555543333 333
Q ss_pred CCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhc
Q 037538 264 NASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANL 343 (461)
Q Consensus 264 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~ 343 (461)
.+++|++|++++|.+++..+..+..+++|++|++++|++++.. +..+..+++|+.|++++|.+++..|..+..+
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 200 (285)
T 1ozn_A 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200 (285)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC------TTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC------HHHhcCccccCEEECCCCcccccCHhHccCc
Confidence 4444555555555444443344444455555555554444311 1123334444444444444443334333333
Q ss_pred cccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCcc
Q 037538 344 STHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSG 383 (461)
Q Consensus 344 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 383 (461)
+ +|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 201 ~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 201 G-RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp T-TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred c-cccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 3 44445555554444333445555555555555555543
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=6.1e-30 Score=264.17 Aligned_cols=371 Identities=15% Similarity=0.155 Sum_probs=278.4
Q ss_pred CcEEEEEcCCCCcc---cccCcccc------------CCCCCCEEecCCCCCcccCchhccC-C-CCCCEEeCCCCC-CC
Q 037538 78 GRVTVLKLESKQLV---GSIPASIG------------NLTNLTGINLFQNRFHGQIPEEIGR-L-QKLQDLNLTYNY-LS 139 (461)
Q Consensus 78 ~~v~~L~l~~~~l~---~~~~~~l~------------~l~~L~~L~L~~n~~~~~~~~~l~~-l-~~L~~L~Ls~n~-l~ 139 (461)
+++++|+++++... +.+|...+ .+++|++|++++|.+++..+..+.. + .+|++|++++|. +.
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 152 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT 152 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence 56888998775431 22222222 6899999999999888766666665 3 349999999886 22
Q ss_pred C-CCCcCCCCCCCCCEEEccCCcCCCc----CchhhcCCCCCcEEEccCCCCc----ccCCccCCCCCCCCEEECccCCC
Q 037538 140 G-KIPTNLSHCTELRSFEASANDFIGQ----IPDQLISLTKLEIIRLGTSNLT----GNIPAWVGNFSSLQVLLLARNNL 210 (461)
Q Consensus 140 ~-~~p~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~l~~n~~ 210 (461)
. .++.....+++|++|++++|.+++. ++....++++|++|++++|.++ +.++..+.++++|++|++++|.+
T Consensus 153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 1 1223334789999999999988665 4445677899999999999987 33445566789999999999998
Q ss_pred cccCChhhhcCCCCcEEecCCCCch-------hhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCC
Q 037538 211 HGSIPNELGQLSALGFFTLYENFIS-------DVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIP 283 (461)
Q Consensus 211 ~~~~~~~l~~l~~L~~L~l~~n~l~-------~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 283 (461)
.+ ++..+..+++|+.|+++..... .....+++|+.+.++.+ ..+.+|..+..+++|++|++++|.+++...
T Consensus 233 ~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 233 LE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp GG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred HH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence 85 7788999999999999753221 12244678999999875 344577778889999999999998765543
Q ss_pred -ccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccC-----------CcCccccchHHHhccccccEEE
Q 037538 284 -ENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQ-----------NGFGGEMPISIANLSTHLRILT 351 (461)
Q Consensus 284 -~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~-----------n~~~~~~~~~~~~~~~~L~~L~ 351 (461)
..+..+++|++|+++ +.+... .+......+++|++|++++ +.+++.....+....++|++|+
T Consensus 311 ~~~~~~~~~L~~L~L~-~~~~~~-----~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~ 384 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETR-NVIGDR-----GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384 (592)
T ss_dssp HHHHTTCTTCCEEEEE-GGGHHH-----HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEE
T ss_pred HHHHHhCcCCCEEecc-CccCHH-----HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEE
Confidence 346889999999999 444431 4555567889999999993 5666543333333234999999
Q ss_pred ccCCcCcccCchhhhc-CCCCCeeecc----cCcCccc-----cchhhhcCCCCCeecccccc--CcccCChhhhc-Ccc
Q 037538 352 MGYNLMHGNIPVGIEN-LVNLSLLGLE----GNNLSGS-----VPEVIGRLNKLEGLELNANK--FSGFMPSSLGN-LTV 418 (461)
Q Consensus 352 l~~n~l~~~~p~~~~~-l~~L~~L~Ls----~n~l~~~-----~~~~l~~~~~L~~L~L~~n~--l~~~~~~~~~~-l~~ 418 (461)
+..+.+++..+..+.. +++|+.|+++ .|.+++. ++..+.++++|+.|++++|. +++..+..+.. +++
T Consensus 385 l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~ 464 (592)
T 3ogk_B 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464 (592)
T ss_dssp EEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTT
T ss_pred eecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCcc
Confidence 9999998877777765 8999999997 6677753 55557789999999998654 77666666654 899
Q ss_pred CCeeecccccccc-cCCccCCCCCCCCEEEccCCCCccc
Q 037538 419 LSRLLMEENRFEG-SIPPSLGNCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 419 L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~ls~N~l~~~ 456 (461)
|+.|++++|++++ .++..+..+++|+.|++++|++++.
T Consensus 465 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 9999999999987 4455668899999999999998653
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.7e-27 Score=244.18 Aligned_cols=287 Identities=22% Similarity=0.283 Sum_probs=177.0
Q ss_pred CCCCCCCCCCcceeeEEe------cCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCC
Q 037538 56 MSSWNDSVHFCNWVGVTC------SPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQ 129 (461)
Q Consensus 56 ~~~w~~~~~~c~w~gv~c------~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 129 (461)
+..|....++|.|.+..+ ......++.|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|+
T Consensus 12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~ 84 (622)
T 3g06_A 12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELR 84 (622)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCC
T ss_pred HHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCC
Confidence 455766778899866432 111135889999999987 6777665 78999999999988 5665 578899
Q ss_pred EEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCC
Q 037538 130 DLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNN 209 (461)
Q Consensus 130 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (461)
+|++++|+++ .+|. .+++|++|++++|.+++ +|. .+++|++|++++|++++ +|.. +++|++|++++|.
T Consensus 85 ~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 85 TLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQ 152 (622)
T ss_dssp EEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC
T ss_pred EEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCc
Confidence 9999999887 5665 67889999999998875 444 56788999999988884 5553 4788888888888
Q ss_pred CcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCC
Q 037538 210 LHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSL 289 (461)
Q Consensus 210 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 289 (461)
+++ +|. .+++|+.|++++|.+..+...+++|+.|++++|.+++ +|.. .++|+.|++++|.++. +|. .+
T Consensus 153 l~~-l~~---~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~ 220 (622)
T 3g06_A 153 LAS-LPA---LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LP 220 (622)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CC
T ss_pred CCC-cCC---ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CC
Confidence 874 343 2456777777777666655545556666666655553 2221 2455555555555542 222 12
Q ss_pred CCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCC
Q 037538 290 KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLV 369 (461)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~ 369 (461)
++|+.|++++|++++.+ ..+++|+.|++++|+++ .+|. ..++|+.|++++|.++ .+|..+..++
T Consensus 221 ~~L~~L~Ls~N~L~~lp----------~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~ 284 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP----------VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLS 284 (622)
T ss_dssp TTCCEEECCSSCCSCCC----------CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred CCCCEEEccCCccCcCC----------CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence 45555555555554321 12344555555555544 2332 1124445555555444 3344444444
Q ss_pred CCCeeecccCcCccccchhh
Q 037538 370 NLSLLGLEGNNLSGSVPEVI 389 (461)
Q Consensus 370 ~L~~L~Ls~n~l~~~~~~~l 389 (461)
+|+.|+|++|.+++..|..+
T Consensus 285 ~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 285 SETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp TTCEEECCSCCCCHHHHHHH
T ss_pred ccCEEEecCCCCCCcCHHHH
Confidence 55555555555444444433
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.8e-26 Score=230.06 Aligned_cols=233 Identities=21% Similarity=0.183 Sum_probs=172.8
Q ss_pred ccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcC
Q 037538 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLIS 172 (461)
Q Consensus 93 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 172 (461)
.+|..+. +++++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.+
T Consensus 68 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 145 (452)
T 3zyi_A 68 EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145 (452)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSS
T ss_pred ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcc
Confidence 3444333 57777788777777666777777777888888777777666677777777888888777777655566777
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCC-hhhhcCCCCcEEecCCCCchhhc--cCCCCCcEEEc
Q 037538 173 LTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP-NELGQLSALGFFTLYENFISDVG--LTLPNLKIFAG 249 (461)
Q Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~--~~l~~L~~L~l 249 (461)
+++|++|++++|.+....+..+.++++|++|++++|...+.++ ..+..+++|++|++++|.+..+. ..+++|+.|++
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEM 225 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEEC
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEEC
Confidence 7778888888777775555567777778888877744333333 35677777777777777775543 34667888888
Q ss_pred cCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccC
Q 037538 250 GVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQ 329 (461)
Q Consensus 250 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 329 (461)
++|.+++..|..+..+++|++|++++|.+++..+..|..+++|+.|++++|+++..+ +..+..+++|+.|++++
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP------HDLFTPLRYLVELHLHH 299 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC------TTSSTTCTTCCEEECCS
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC------hHHhccccCCCEEEccC
Confidence 888888877888888888888888888888888888888888888888888887632 33456778888888888
Q ss_pred CcCc
Q 037538 330 NGFG 333 (461)
Q Consensus 330 n~~~ 333 (461)
|.+.
T Consensus 300 Np~~ 303 (452)
T 3zyi_A 300 NPWN 303 (452)
T ss_dssp SCEE
T ss_pred CCcC
Confidence 8765
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=4.6e-29 Score=236.48 Aligned_cols=268 Identities=18% Similarity=0.203 Sum_probs=180.8
Q ss_pred CCCCCCCCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCC-cccCchhcc-------CCCCC
Q 037538 57 SSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRF-HGQIPEEIG-------RLQKL 128 (461)
Q Consensus 57 ~~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~-~~~~~~~l~-------~l~~L 128 (461)
..|.....|+.+..+.......+++.++++++.+ .+|..+... |++|++++|.+ .+.+|..+. .+++|
T Consensus 22 ~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L 97 (312)
T 1wwl_A 22 PDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97 (312)
T ss_dssp CCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCC
T ss_pred cchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCc
Confidence 4565544555555443322225677778888888 667655544 88899999988 446776665 78999
Q ss_pred CEEeCCCCCCCCCCCcCC--CCCCCCCEEEccCCcCCCcCchhhcCC-----CCCcEEEccCCCCcccCCccCCCCCCCC
Q 037538 129 QDLNLTYNYLSGKIPTNL--SHCTELRSFEASANDFIGQIPDQLISL-----TKLEIIRLGTSNLTGNIPAWVGNFSSLQ 201 (461)
Q Consensus 129 ~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (461)
++|++++|.+++.+|..+ ..+++|++|++++|++++. |..++++ ++|++|++++|.+.+..+..+.++++|+
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 999999999998888876 8899999999999999876 7777776 8999999999999877778899999999
Q ss_pred EEECccCCCccc--CChhh--hcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccC-hhhcCCCCCCEEEcccc
Q 037538 202 VLLLARNNLHGS--IPNEL--GQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIP-VSLSNASNLQVLDFAEN 276 (461)
Q Consensus 202 ~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n 276 (461)
+|++++|++.+. .+..+ ..+++|++|++++|.+..+. .++ ..+..+++|++|++++|
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------------~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS------------------GVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH------------------HHHHHHHHTTCCCSEEECTTS
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH------------------HHHHHHHhcCCCCCEEECCCC
Confidence 999999988754 23333 66667777777666654221 111 22344556666666666
Q ss_pred cccccCC-ccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCC
Q 037538 277 GLTGTIP-ENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYN 355 (461)
Q Consensus 277 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n 355 (461)
.+++..| ..+..+++|++|++++|+++.. +..+. ++|++|++++|++++. |. +..++ +|++|++++|
T Consensus 239 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-------p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~-~L~~L~L~~N 306 (312)
T 1wwl_A 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-------PKGLP--AKLSVLDLSYNRLDRN-PS-PDELP-QVGNLSLKGN 306 (312)
T ss_dssp CCCSSCCCSCCCCCTTCCEEECTTSCCSSC-------CSSCC--SEEEEEECCSSCCCSC-CC-TTTSC-EEEEEECTTC
T ss_pred cCCcccchhhhhhcCCCCEEECCCCccChh-------hhhcc--CCceEEECCCCCCCCC-hh-HhhCC-CCCEEeccCC
Confidence 6655443 3344556666666666666532 11122 5666666666666643 43 44444 6666777666
Q ss_pred cCcc
Q 037538 356 LMHG 359 (461)
Q Consensus 356 ~l~~ 359 (461)
++++
T Consensus 307 ~l~~ 310 (312)
T 1wwl_A 307 PFLD 310 (312)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 6653
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=4.1e-26 Score=233.90 Aligned_cols=269 Identities=23% Similarity=0.277 Sum_probs=204.1
Q ss_pred CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEc
Q 037538 102 TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRL 181 (461)
Q Consensus 102 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 181 (461)
.+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 46899999999998 7887665 79999999999998 6666 5789999999999987 4565 7799999999
Q ss_pred cCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChh
Q 037538 182 GTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVS 261 (461)
Q Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~ 261 (461)
++|.+++ +|. .+++|++|++++|.+++ +|.. +++|++|++++|.+..+...+++|+.|++++|.+++ +|
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~-l~-- 177 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS-LP-- 177 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CC--
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCC-Cc--
Confidence 9999884 555 56889999999999884 5543 478889999998888776667788888888888775 44
Q ss_pred hcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHH
Q 037538 262 LSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIA 341 (461)
Q Consensus 262 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~ 341 (461)
..+++|++|++++|.+++ +|. .+++|+.|++++|.++..+. .+++|+.|++++|.+++ +|
T Consensus 178 -~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~----------~~~~L~~L~Ls~N~L~~-lp---- 237 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPA----------LPSGLKELIVSGNRLTS-LP---- 237 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCC----------CCTTCCEEECCSSCCSC-CC----
T ss_pred -ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCC----------CCCCCCEEEccCCccCc-CC----
Confidence 445788888888888774 333 24678888888887775321 23678888888887774 44
Q ss_pred hccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCc
Q 037538 342 NLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLT 417 (461)
Q Consensus 342 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 417 (461)
...++|++|++++|.+++ +|. .+++|+.|++++|.++ .+|..+..+++|+.|+|++|++++..|..+..++
T Consensus 238 ~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 122377888888887773 554 5577778888888777 6677777778888888888887777776665443
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.1e-26 Score=227.62 Aligned_cols=233 Identities=20% Similarity=0.208 Sum_probs=158.4
Q ss_pred ccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcC
Q 037538 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLIS 172 (461)
Q Consensus 93 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 172 (461)
.+|..+. ++++.|++++|++.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|+++...+..+..
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 3444333 56667777777766555566666777777777777666555566666777777777777666555555666
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCC-hhhhcCCCCcEEecCCCCchhhc--cCCCCCcEEEc
Q 037538 173 LTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP-NELGQLSALGFFTLYENFISDVG--LTLPNLKIFAG 249 (461)
Q Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~--~~l~~L~~L~l 249 (461)
+++|++|++++|.+....+..+.++++|++|++++|...+.++ ..+..+++|++|++++|.+..+. ..+++|+.|++
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 214 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDL 214 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEEC
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEEC
Confidence 7777777777776665555566666777777776643332333 35666666677776666665443 33567777777
Q ss_pred cCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccC
Q 037538 250 GVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQ 329 (461)
Q Consensus 250 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 329 (461)
++|.+++..|..+..+++|++|++++|.+++..+..|..+++|+.|+|++|+++..+ +..+..+++|+.|++++
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP------HDLFTPLHHLERIHLHH 288 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC------TTTTSSCTTCCEEECCS
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC------hhHhccccCCCEEEcCC
Confidence 777777777777888888888888888888777778888888888888888887632 34456778888888888
Q ss_pred CcCc
Q 037538 330 NGFG 333 (461)
Q Consensus 330 n~~~ 333 (461)
|.+.
T Consensus 289 Np~~ 292 (440)
T 3zyj_A 289 NPWN 292 (440)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 8764
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.1e-26 Score=229.64 Aligned_cols=246 Identities=19% Similarity=0.213 Sum_probs=145.6
Q ss_pred CCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCC
Q 037538 152 LRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYE 231 (461)
Q Consensus 152 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 231 (461)
.+.++.++..++ .+|..+. +++++|++++|++++..+..+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L-- 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL-- 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC--
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC--
Confidence 456777766665 4665544 57888888888888777777888888888888888887665555555444333333
Q ss_pred CCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccC-cCcccCCCCc
Q 037538 232 NFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQN-ELGSREIGDL 310 (461)
Q Consensus 232 n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 310 (461)
++|.+++..+..+..+++|++|++++|.++...+..|..+++|+.|++++| .+...
T Consensus 131 ------------------~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i----- 187 (452)
T 3zyi_A 131 ------------------FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI----- 187 (452)
T ss_dssp ------------------CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-----
T ss_pred ------------------CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc-----
Confidence 334444344445666677777777777666555556666666666666663 23221
Q ss_pred hhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhh
Q 037538 311 NFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIG 390 (461)
Q Consensus 311 ~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~ 390 (461)
....+.++++|+.|++++|+++ + +| .+..+++|+.|+|++|.+++..|..+.
T Consensus 188 -~~~~~~~l~~L~~L~L~~n~l~-------------------------~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 239 (452)
T 3zyi_A 188 -SEGAFEGLFNLKYLNLGMCNIK-------------------------D-MP-NLTPLVGLEELEMSGNHFPEIRPGSFH 239 (452)
T ss_dssp -CTTTTTTCTTCCEEECTTSCCS-------------------------S-CC-CCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred -ChhhccCCCCCCEEECCCCccc-------------------------c-cc-cccccccccEEECcCCcCcccCccccc
Confidence 1123444555555555555554 2 22 244455555555555555555555555
Q ss_pred cCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCC
Q 037538 391 RLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNL 453 (461)
Q Consensus 391 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l 453 (461)
++++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 555555555555555555555555555666666666655544444555555666666666554
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.6e-28 Score=232.66 Aligned_cols=256 Identities=20% Similarity=0.217 Sum_probs=147.3
Q ss_pred cCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcC-CCcCchhhc-------CCCCCcEEEccCCCCcccCCccC
Q 037538 123 GRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDF-IGQIPDQLI-------SLTKLEIIRLGTSNLTGNIPAWV 194 (461)
Q Consensus 123 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~-~~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~~l 194 (461)
+..++|++|++++|.+ .+|..+... |+.|++++|.+ ...+|..+. ++++|++|++++|.+++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445566666666665 445444332 56666666665 234555554 67788888888888877777765
Q ss_pred --CCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEE
Q 037538 195 --GNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLD 272 (461)
Q Consensus 195 --~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 272 (461)
..+++|++|++++|.+++. |..++.+.. ..+++|++|+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~---------------------------------------~~~~~L~~L~ 155 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQ---------------------------------------WLKPGLKVLS 155 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHT---------------------------------------TCCTTCCEEE
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHH---------------------------------------hhcCCCcEEE
Confidence 7778888888888888755 554443211 0125666666
Q ss_pred cccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhh--cCCCCCCEEEccCCcCcc--ccchHHHhcccccc
Q 037538 273 FAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL--ANCTSLEVLGLAQNGFGG--EMPISIANLSTHLR 348 (461)
Q Consensus 273 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l--~~~~~L~~L~L~~n~~~~--~~~~~~~~~~~~L~ 348 (461)
+++|.+++..+..+..+++|++|++++|++.+.. ..+..+ ..+++|++|++++|++++ .++..
T Consensus 156 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------- 222 (312)
T 1wwl_A 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER----GLISALCPLKFPTLQVLALRNAGMETPSGVCSA--------- 222 (312)
T ss_dssp EESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH----HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH---------
T ss_pred eeCCCCccchHHHhccCCCCCEEECCCCCcCcch----HHHHHHHhccCCCCCEEECCCCcCcchHHHHHH---------
Confidence 6666666666666666777777777776654310 122233 566677777777776652 11111
Q ss_pred EEEccCCcCcccCchhhhcCCCCCeeecccCcCccccc-hhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccc
Q 037538 349 ILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVP-EVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEEN 427 (461)
Q Consensus 349 ~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 427 (461)
.+..+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+|..+. ++|+.|++++|
T Consensus 223 ---------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 223 ---------------LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYN 284 (312)
T ss_dssp ---------------HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSS
T ss_pred ---------------HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCC
Confidence 12234444555555555444332 22333455555555555555 4454443 56666666666
Q ss_pred cccccCCccCCCCCCCCEEEccCCCCcc
Q 037538 428 RFEGSIPPSLGNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 428 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 455 (461)
++++. |. +..+++|+.|++++|++++
T Consensus 285 ~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 285 RLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 66643 44 5666666666666666654
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.9e-28 Score=231.51 Aligned_cols=267 Identities=17% Similarity=0.180 Sum_probs=167.5
Q ss_pred CCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECcc
Q 037538 128 LQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLAR 207 (461)
Q Consensus 128 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (461)
++..+++.+.+...+...+..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4455566665543333344456677888888887777666777777778888887777775443 66777777777777
Q ss_pred CCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCC
Q 037538 208 NNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFG 287 (461)
Q Consensus 208 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 287 (461)
|.+++.. ..++|++|++++|.+ ++..+. .+++|++|++++|.+++..+..+.
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l--------------------~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~ 141 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNI--------------------SRVSCS---RGQGKKNIYLANNKITMLRDLDEG 141 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCC--------------------SEEEEC---CCSSCEEEECCSSCCCSGGGBCTG
T ss_pred Ccccccc-----CCCCcCEEECCCCcc--------------------CCcCcc---ccCCCCEEECCCCCCCCccchhhh
Confidence 7766321 224555555555544 433222 235566666666666665555666
Q ss_pred CCCCCCEEEcccCcCcccCCCCchhhhhh-cCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhh
Q 037538 288 SLKDLVRLNFDQNELGSREIGDLNFLKFL-ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIE 366 (461)
Q Consensus 288 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l-~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 366 (461)
.+++|++|++++|.+++. .+..+ ..+++|++|++++|.+++. +... .+ ++|++|++++|.+++. |..+.
T Consensus 142 ~l~~L~~L~Ls~N~l~~~------~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~-~l-~~L~~L~Ls~N~l~~l-~~~~~ 211 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTV------NFAELAASSDTLEHLNLQYNFIYDV-KGQV-VF-AKLKTLDLSSNKLAFM-GPEFQ 211 (317)
T ss_dssp GGSSEEEEECTTSCCCEE------EGGGGGGGTTTCCEEECTTSCCCEE-ECCC-CC-TTCCEEECCSSCCCEE-CGGGG
T ss_pred ccCCCCEEECCCCCCCcc------cHHHHhhccCcCCEEECCCCcCccc-cccc-cc-ccCCEEECCCCcCCcc-hhhhc
Confidence 666666666666666552 12222 3456677777777666533 2211 22 3677777777777753 33467
Q ss_pred cCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCc-ccCChhhhcCccCCeeecccc-cccccCCc
Q 037538 367 NLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFS-GFMPSSLGNLTVLSRLLMEEN-RFEGSIPP 435 (461)
Q Consensus 367 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~ 435 (461)
.+++|+.|++++|.++ .+|..+..+++|+.|++++|+++ +.+|..+..+++|+.+++++| .++|..|.
T Consensus 212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 7777777777777777 46666777777777777777777 666777777777777777743 45555444
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=5.3e-26 Score=225.93 Aligned_cols=236 Identities=21% Similarity=0.187 Sum_probs=208.3
Q ss_pred eeeEEecCC---------CCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCC
Q 037538 68 WVGVTCSPS---------NGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL 138 (461)
Q Consensus 68 w~gv~c~~~---------~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l 138 (461)
|..+.|... ...++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 456677532 25689999999999988889999999999999999999987888999999999999999999
Q ss_pred CCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCC-ccCCCCCCCCEEECccCCCcccCChh
Q 037538 139 SGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIP-AWVGNFSSLQVLLLARNNLHGSIPNE 217 (461)
Q Consensus 139 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~ 217 (461)
++..+..+..+++|++|++++|.+....+..+.++++|++|++++|+..+.++ ..+.++++|++|++++|.++ .+| .
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~ 202 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-N 202 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-C
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-c
Confidence 96666689999999999999999997777789999999999999965444444 47889999999999999998 455 5
Q ss_pred hhcCCCCcEEecCCCCchhh----ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCC
Q 037538 218 LGQLSALGFFTLYENFISDV----GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLV 293 (461)
Q Consensus 218 l~~l~~L~~L~l~~n~l~~~----~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 293 (461)
+..+++|+.|++++|.+..+ ...+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 88999999999999998654 35688999999999999998899999999999999999999988888899999999
Q ss_pred EEEcccCcCccc
Q 037538 294 RLNFDQNELGSR 305 (461)
Q Consensus 294 ~L~L~~n~l~~~ 305 (461)
.|++++|.+...
T Consensus 283 ~L~L~~Np~~Cd 294 (440)
T 3zyj_A 283 RIHLHHNPWNCN 294 (440)
T ss_dssp EEECCSSCEECS
T ss_pred EEEcCCCCccCC
Confidence 999999988653
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.7e-28 Score=230.75 Aligned_cols=267 Identities=17% Similarity=0.187 Sum_probs=160.7
Q ss_pred EEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccC
Q 037538 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASA 159 (461)
Q Consensus 80 v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 159 (461)
....+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3444555555543333333445566666666666665555566666666666666666653332 55566666666666
Q ss_pred CcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhcc
Q 037538 160 NDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGL 239 (461)
Q Consensus 160 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 239 (461)
|.+++. ...++|++|++++|.+++..+. .+++|++|++++|.++
T Consensus 90 n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~---------------------------- 133 (317)
T 3o53_A 90 NYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKIT---------------------------- 133 (317)
T ss_dssp SEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCC----------------------------
T ss_pred Cccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCC----------------------------
Confidence 655421 1224555555555555432222 1334444444444444
Q ss_pred CCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccC-CCCCCCCEEEcccCcCcccCCCCchhhhhhcC
Q 037538 240 TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENF-GSLKDLVRLNFDQNELGSREIGDLNFLKFLAN 318 (461)
Q Consensus 240 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 318 (461)
+..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++.. ....
T Consensus 134 ----------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~ 189 (317)
T 3o53_A 134 ----------------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------GQVV 189 (317)
T ss_dssp ----------------SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------CCCC
T ss_pred ----------------CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--------cccc
Confidence 3333344555666666666666665555544 35666777777777665431 1223
Q ss_pred CCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCc-cccchhhhcCCCCCe
Q 037538 319 CTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLS-GSVPEVIGRLNKLEG 397 (461)
Q Consensus 319 ~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~~~~L~~ 397 (461)
+++|++|++++|++++ +|..+..++ +|++|++++|.+++ +|..+..+++|+.|++++|.+. +.++..+..+++|+.
T Consensus 190 l~~L~~L~Ls~N~l~~-l~~~~~~l~-~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAA-GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266 (317)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGT-TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred cccCCEEECCCCcCCc-chhhhcccC-cccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceE
Confidence 6777888888887774 444466655 88888888888874 6777888889999999999988 677888888889999
Q ss_pred eccccc-cCcccCCh
Q 037538 398 LELNAN-KFSGFMPS 411 (461)
Q Consensus 398 L~L~~n-~l~~~~~~ 411 (461)
+++.++ .+.+..|.
T Consensus 267 l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 267 VAKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHHHHSSSSC
T ss_pred EECCCchhccCCchh
Confidence 998854 34554443
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=5.9e-29 Score=256.86 Aligned_cols=369 Identities=15% Similarity=0.129 Sum_probs=234.5
Q ss_pred CcEEEEEcCCCCcccccCcccc-CCCCCCEEecCCC-CCccc-CchhccCCCCCCEEeCCCCCCCCCCCc----CCCCCC
Q 037538 78 GRVTVLKLESKQLVGSIPASIG-NLTNLTGINLFQN-RFHGQ-IPEEIGRLQKLQDLNLTYNYLSGKIPT----NLSHCT 150 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~-~l~~L~~L~L~~n-~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~ 150 (461)
.++++|+++++.+.+..+..+. .+++|++|++++| .+++. ++..+..+++|++|++++|.+++..+. ....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4567777777766655544443 4677777777776 44322 333344677777777777765543322 223566
Q ss_pred CCCEEEccCCc--CCC-cCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCC-------CcccCChhhhc
Q 037538 151 ELRSFEASAND--FIG-QIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNN-------LHGSIPNELGQ 220 (461)
Q Consensus 151 ~L~~L~l~~n~--~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-------~~~~~~~~l~~ 220 (461)
+|++|++++|. +.. .++..+.++++|++|++++|...+.++..+.++++|++|+++.+. +. .++..+..
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~ 263 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSG 263 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHT
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhc
Confidence 77777777665 211 111223446777777777763222355556666777777755443 12 23335566
Q ss_pred CCCCcEE-ecCCCC---chhhccCCCCCcEEEccCccCccccC-hhhcCCCCCCEEEccccccccc-CCccCCCCCCCCE
Q 037538 221 LSALGFF-TLYENF---ISDVGLTLPNLKIFAGGVNYFTGSIP-VSLSNASNLQVLDFAENGLTGT-IPENFGSLKDLVR 294 (461)
Q Consensus 221 l~~L~~L-~l~~n~---l~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~ 294 (461)
+++|+.+ .+.... +..+...+++|+.|++++|.+++... ..+..+++|++|++++| +... ++.....+++|++
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence 6666666 333322 22222346889999999988765433 33567889999999888 4322 2223345788999
Q ss_pred EEccc---------CcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEcc--C----CcCcc
Q 037538 295 LNFDQ---------NELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMG--Y----NLMHG 359 (461)
Q Consensus 295 L~L~~---------n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~--~----n~l~~ 359 (461)
|++.+ +.+++. ........+++|+.|.++.+.+++.....+....++|+.|+++ + +.+++
T Consensus 343 L~L~~~~~~g~~~~~~l~~~-----~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQ-----GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHH-----HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred EEEecCcccccccCCCCCHH-----HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence 98844 344331 2223334588999998888888876666665433489999998 3 44542
Q ss_pred -----cCchhhhcCCCCCeeecccCcCccccchhhhc-CCCCCeeccccccCcccCChhh-hcCccCCeeeccccccccc
Q 037538 360 -----NIPVGIENLVNLSLLGLEGNNLSGSVPEVIGR-LNKLEGLELNANKFSGFMPSSL-GNLTVLSRLLMEENRFEGS 432 (461)
Q Consensus 360 -----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~ 432 (461)
.++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|++++.
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 1223366788999999977 676665556655 8889999999999877666555 6689999999999998765
Q ss_pred CCc-cCCCCCCCCEEEccCCCCc
Q 037538 433 IPP-SLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 433 ~p~-~l~~l~~L~~L~ls~N~l~ 454 (461)
.+. ....+++|+.|++++|+++
T Consensus 497 ~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 497 ALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHhCCCCCEEeeeCCCCC
Confidence 444 4455889999999999874
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=4.9e-25 Score=204.31 Aligned_cols=218 Identities=22% Similarity=0.279 Sum_probs=157.1
Q ss_pred CCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCC
Q 037538 63 VHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142 (461)
Q Consensus 63 ~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 142 (461)
.++|.|.|+.|.-. ..++.++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 47899999988643 45678999999887 4666554 68999999999998666668889999999999999988555
Q ss_pred CcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCC
Q 037538 143 PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLS 222 (461)
Q Consensus 143 p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 222 (461)
+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 55568899999999999988876666778888999999998888876667778888888888888888754444455544
Q ss_pred CCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcC
Q 037538 223 ALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNEL 302 (461)
Q Consensus 223 ~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 302 (461)
+|++|++++| .+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 158 ~L~~L~L~~n--------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 158 SLKELRLYNN--------------------QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCCEEECCSS--------------------CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccceeEecCC--------------------cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 4444444433 33333334455566666666666666655555566666666666666655
Q ss_pred cc
Q 037538 303 GS 304 (461)
Q Consensus 303 ~~ 304 (461)
..
T Consensus 218 ~c 219 (270)
T 2o6q_A 218 DC 219 (270)
T ss_dssp CC
T ss_pred eC
Confidence 43
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.7e-26 Score=231.92 Aligned_cols=148 Identities=18% Similarity=0.143 Sum_probs=82.4
Q ss_pred CCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCC-CCCCCCEEEcccCcCcccCCCCchhhhhhcCCCC
Q 037538 243 NLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFG-SLKDLVRLNFDQNELGSREIGDLNFLKFLANCTS 321 (461)
Q Consensus 243 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~ 321 (461)
+|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|+.|++++|.+++.+ ....+++
T Consensus 121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--------~~~~l~~ 192 (487)
T 3oja_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------GQVVFAK 192 (487)
T ss_dssp SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------CCCCCTT
T ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--------ccccCCC
Confidence 333444444444444444455556666666666666655555543 4566666666666665421 1223556
Q ss_pred CCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCc-cccchhhhcCCCCCeecc
Q 037538 322 LEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLS-GSVPEVIGRLNKLEGLEL 400 (461)
Q Consensus 322 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~~~~L~~L~L 400 (461)
|+.|++++|.+++ +|..+..++ +|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.+++
T Consensus 193 L~~L~Ls~N~l~~-~~~~~~~l~-~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 193 LKTLDLSSNKLAF-MGPEFQSAA-GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCEEECCSSCCCE-ECGGGGGGT-TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCEEECCCCCCCC-CCHhHcCCC-CccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 6666666666654 333344443 66666666666664 4555666666666666666665 455555666666666665
Q ss_pred c
Q 037538 401 N 401 (461)
Q Consensus 401 ~ 401 (461)
.
T Consensus 270 ~ 270 (487)
T 3oja_A 270 Q 270 (487)
T ss_dssp H
T ss_pred c
Confidence 4
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=5.6e-26 Score=228.09 Aligned_cols=234 Identities=19% Similarity=0.219 Sum_probs=152.6
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccC
Q 037538 175 KLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYF 254 (461)
Q Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~ 254 (461)
+|++|++++|.+++..|..+..+++|++|++++|.+++..| +..+++|++|++++|.+..+.. .++|+.|++++|.+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-~~~L~~L~L~~N~l 111 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-GPSIETLHAANNNI 111 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-CTTCCEEECCSSCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-CCCcCEEECcCCcC
Confidence 44444554444444334444444555555555554443332 4444445555555444443332 35666667777766
Q ss_pred ccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhc-CCCCCCEEEccCCcCc
Q 037538 255 TGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA-NCTSLEVLGLAQNGFG 333 (461)
Q Consensus 255 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-~~~~L~~L~L~~n~~~ 333 (461)
++..+. .+++|++|++++|.+++..|..++.+++|+.|++++|.+++ ..+..+. .+++|+.|++++|.++
T Consensus 112 ~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 112 SRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT------VNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE------EEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC------cChHHHhhhCCcccEEecCCCccc
Confidence 655443 34778888888888888777788888888888888888876 3334443 6788888888888887
Q ss_pred cccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCc-ccCChh
Q 037538 334 GEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFS-GFMPSS 412 (461)
Q Consensus 334 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~ 412 (461)
+..+. ..+ ++|++|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..
T Consensus 183 ~~~~~--~~l-~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 183 DVKGQ--VVF-AKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp EEECC--CCC-TTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccc--ccC-CCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 54221 123 378888888888876444 47777888888888888874 6777777788888888888877 566677
Q ss_pred hhcCccCCeeecc
Q 037538 413 LGNLTVLSRLLME 425 (461)
Q Consensus 413 ~~~l~~L~~L~l~ 425 (461)
+..++.|+.++++
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 7777777777775
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.1e-24 Score=202.73 Aligned_cols=208 Identities=22% Similarity=0.246 Sum_probs=152.3
Q ss_pred CCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCC
Q 037538 243 NLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSL 322 (461)
Q Consensus 243 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L 322 (461)
+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++. .+..+.++++|
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L 102 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL------ALGAFSGLSSL 102 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE------CTTTTTTCTTC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc------ChhhhcCCccc
Confidence 466666666766665555677777888888888877766666777778888888888877762 33456677788
Q ss_pred CEEEccCCcCccccchHHHhccccccEEEccCCcCccc-CchhhhcCCCCCeeecccCcCccccchhhhcCCCCC----e
Q 037538 323 EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGN-IPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLE----G 397 (461)
Q Consensus 323 ~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~----~ 397 (461)
++|++++|.+++..+..+..++ +|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+ .
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred cEEECCCCCccccCchhcccCC-CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence 8888888877755444555555 788888888887753 577788888888888888888876666676666666 7
Q ss_pred eccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCC
Q 037538 398 LELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 398 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
|++++|++++..+..+. ..+|+.|++++|++++..+..+.++++|+.|++++|++.+..|
T Consensus 182 L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 88888888865554443 4478888888888886655667888888888888888887665
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=3.1e-27 Score=243.99 Aligned_cols=370 Identities=15% Similarity=0.120 Sum_probs=261.9
Q ss_pred CcEEEEEcCCCCccccc---C------------ccccCCCCCCEEecCCCCCcccCchhcc-CCCCCCEEeCCCC-CCCC
Q 037538 78 GRVTVLKLESKQLVGSI---P------------ASIGNLTNLTGINLFQNRFHGQIPEEIG-RLQKLQDLNLTYN-YLSG 140 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~---~------------~~l~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~Ls~n-~l~~ 140 (461)
++++.++++++...... | .....+++|++|++++|.+++..+..+. .+++|++|++++| .+++
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 56788888876532211 1 1124678899999999988876666665 6889999999988 4432
Q ss_pred C-CCcCCCCCCCCCEEEccCCcCCCcCchhhc----CCCCCcEEEccCCC--Cccc-CCccCCCCCCCCEEECccCCCcc
Q 037538 141 K-IPTNLSHCTELRSFEASANDFIGQIPDQLI----SLTKLEIIRLGTSN--LTGN-IPAWVGNFSSLQVLLLARNNLHG 212 (461)
Q Consensus 141 ~-~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~----~l~~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~l~~n~~~~ 212 (461)
. ++..+.++++|++|++++|.+++..+..+. .+++|++|++++|. +... ++....++++|++|++++|...+
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 1 344445788999999999887665444443 66789999999886 2211 11223456899999999884444
Q ss_pred cCChhhhcCCCCcEEecCCCCc----------hhhccCCCCCcEEE-ccCccCccccChhhcCCCCCCEEEccccccccc
Q 037538 213 SIPNELGQLSALGFFTLYENFI----------SDVGLTLPNLKIFA-GGVNYFTGSIPVSLSNASNLQVLDFAENGLTGT 281 (461)
Q Consensus 213 ~~~~~l~~l~~L~~L~l~~n~l----------~~~~~~l~~L~~L~-l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 281 (461)
.++..+..+++|+.|+++.+.. ......+++|+.+. +... ..+.++..+..+++|++|++++|.+++.
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~ 304 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTTLNLSYATVQSY 304 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCEEECTTCCCCHH
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCCCEEEccCCCCCHH
Confidence 4777888889999998765532 11224577888883 3322 2234555556789999999999987654
Q ss_pred CC-ccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccC---------CcCccccchHHHhccccccEEE
Q 037538 282 IP-ENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQ---------NGFGGEMPISIANLSTHLRILT 351 (461)
Q Consensus 282 ~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~---------n~~~~~~~~~~~~~~~~L~~L~ 351 (461)
.. ..+..+++|++|++++| ++.. .+......+++|++|++++ +.+++.....+....++|++|.
T Consensus 305 ~l~~~~~~~~~L~~L~l~~~-~~~~-----~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 305 DLVKLLCQCPKLQRLWVLDY-IEDA-----GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp HHHHHHTTCTTCCEEEEEGG-GHHH-----HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHhcCCCcCEEeCcCc-cCHH-----HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 33 33678899999999988 4431 3444455689999999943 4555444444444234999999
Q ss_pred ccCCcCcccCchhhh-cCCCCCeeecc--c----CcCcc-----ccchhhhcCCCCCeeccccccCcccCChhhhc-Ccc
Q 037538 352 MGYNLMHGNIPVGIE-NLVNLSLLGLE--G----NNLSG-----SVPEVIGRLNKLEGLELNANKFSGFMPSSLGN-LTV 418 (461)
Q Consensus 352 l~~n~l~~~~p~~~~-~l~~L~~L~Ls--~----n~l~~-----~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~ 418 (461)
+..+.+++..+..+. .+++|+.|+++ + +.+++ .++..+..+++|+.|++++ .+++..+..+.. +++
T Consensus 379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~ 457 (594)
T 2p1m_B 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKK 457 (594)
T ss_dssp EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTT
T ss_pred HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchh
Confidence 998998876655554 58999999999 4 45552 2333467889999999987 777666667766 899
Q ss_pred CCeeecccccccccCCccC-CCCCCCCEEEccCCCCcc
Q 037538 419 LSRLLMEENRFEGSIPPSL-GNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 419 L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~ls~N~l~~ 455 (461)
|+.|++++|.+++..+..+ ..+++|+.|++++|++++
T Consensus 458 L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 458 MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred ccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 9999999999987666555 668999999999999864
No 75
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=1.4e-25 Score=217.10 Aligned_cols=146 Identities=18% Similarity=0.266 Sum_probs=95.9
Q ss_pred CCCCEEEcccccccccCC----ccCCCCC-CCCEEEcccCcCcccCCCCchhhhhhcCC-CCCCEEEccCCcCccc----
Q 037538 266 SNLQVLDFAENGLTGTIP----ENFGSLK-DLVRLNFDQNELGSREIGDLNFLKFLANC-TSLEVLGLAQNGFGGE---- 335 (461)
Q Consensus 266 ~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~~-~~L~~L~L~~n~~~~~---- 335 (461)
++|++|++++|.+++..+ ..+..++ +|++|++++|++++.... .+...+..+ ++|++|++++|.+++.
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~ 215 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA--ELAKFLASIPASVTSLDLSANLLGLKSYAE 215 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH--HHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHH--HHHHHHHhCCCCCCEEECCCCCCChhHHHH
Confidence 688888888888875433 3344454 888888888888763322 334455566 4888888888888753
Q ss_pred cchHHHhccccccEEEccCCcCcccCch----hhhcCCCCCeeecccCcCccc-------cchhhhcCCCCCeecccccc
Q 037538 336 MPISIANLSTHLRILTMGYNLMHGNIPV----GIENLVNLSLLGLEGNNLSGS-------VPEVIGRLNKLEGLELNANK 404 (461)
Q Consensus 336 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~----~~~~l~~L~~L~Ls~n~l~~~-------~~~~l~~~~~L~~L~L~~n~ 404 (461)
++..+....++|++|++++|.+++..+. .+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|+
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 4444544444788888888887764442 235567788888888874432 23345567777788888887
Q ss_pred CcccCChhh
Q 037538 405 FSGFMPSSL 413 (461)
Q Consensus 405 l~~~~~~~~ 413 (461)
+.+..+..+
T Consensus 296 l~~~~~~~~ 304 (362)
T 3goz_A 296 IHPSHSIPI 304 (362)
T ss_dssp CCGGGCHHH
T ss_pred CCCcchHHH
Confidence 776544444
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.3e-23 Score=192.61 Aligned_cols=214 Identities=20% Similarity=0.195 Sum_probs=149.4
Q ss_pred ccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcC
Q 037538 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLIS 172 (461)
Q Consensus 93 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 172 (461)
.+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.+
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 4455443 57889999999888766667888889999999999888666667888899999999999888777788888
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCccc-CChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccC
Q 037538 173 LTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGS-IPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGV 251 (461)
Q Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~ 251 (461)
+++|++|++++|.+.+..+..+.++++|++|++++|.+.+. +|..+..+++|++|++++|.+..+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-------------- 164 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-------------- 164 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE--------------
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC--------------
Confidence 89999999998888876666788888899999988888753 577777777776666666655432
Q ss_pred ccCccccChhhcCCCCCC----EEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEc
Q 037538 252 NYFTGSIPVSLSNASNLQ----VLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGL 327 (461)
Q Consensus 252 n~~~~~~~~~l~~~~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L 327 (461)
.+..+..+++|+ +|++++|.+++..+..+. ..+|+.|++++|++++.+ ...+..+++|+.|++
T Consensus 165 ------~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 165 ------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVP------DGIFDRLTSLQKIWL 231 (276)
T ss_dssp ------CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCC------TTTTTTCCSCCEEEC
T ss_pred ------CHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecC------HhHhcccccccEEEc
Confidence 222333333333 666666666654444333 235666666666665422 223455666666666
Q ss_pred cCCcCccc
Q 037538 328 AQNGFGGE 335 (461)
Q Consensus 328 ~~n~~~~~ 335 (461)
++|.+.+.
T Consensus 232 ~~N~~~c~ 239 (276)
T 2z62_A 232 HTNPWDCS 239 (276)
T ss_dssp CSSCBCCC
T ss_pred cCCccccc
Confidence 66666543
No 77
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=5e-25 Score=213.14 Aligned_cols=264 Identities=17% Similarity=0.178 Sum_probs=171.7
Q ss_pred EEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCC----ccCCCCC-CCCEEECccCCCcccCChhhhcCCCCcEEec
Q 037538 155 FEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIP----AWVGNFS-SLQVLLLARNNLHGSIPNELGQLSALGFFTL 229 (461)
Q Consensus 155 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 229 (461)
+++++|.+++.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-------- 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI-------- 74 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH--------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH--------
Confidence 4555566665555555555556666666666654433 4455555 56666666666665545444432
Q ss_pred CCCCchhhccCCCCCcEEEccCccCccccCh----hhcCC-CCCCEEEcccccccccCCcc----CCC-CCCCCEEEccc
Q 037538 230 YENFISDVGLTLPNLKIFAGGVNYFTGSIPV----SLSNA-SNLQVLDFAENGLTGTIPEN----FGS-LKDLVRLNFDQ 299 (461)
Q Consensus 230 ~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~----~l~~~-~~L~~L~l~~n~l~~~~~~~----~~~-l~~L~~L~L~~ 299 (461)
+....++|++|++++|.+++..+. .+... ++|++|++++|.+++..+.. +.. .++|++|++++
T Consensus 75 -------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 75 -------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp -------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred -------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 000012333333333444333333 34444 79999999999998766544 334 36999999999
Q ss_pred CcCcccCCCCchhhhhhcCCC-CCCEEEccCCcCccccchHHHhc----cccccEEEccCCcCccc----Cchhhhc-CC
Q 037538 300 NELGSREIGDLNFLKFLANCT-SLEVLGLAQNGFGGEMPISIANL----STHLRILTMGYNLMHGN----IPVGIEN-LV 369 (461)
Q Consensus 300 n~l~~~~~~~~~~~~~l~~~~-~L~~L~L~~n~~~~~~~~~~~~~----~~~L~~L~l~~n~l~~~----~p~~~~~-l~ 369 (461)
|.+++.... .+...+...+ +|++|++++|.+++..+..+... +++|++|++++|.+++. ++..+.. .+
T Consensus 148 N~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~ 225 (362)
T 3goz_A 148 NDLGIKSSD--ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN 225 (362)
T ss_dssp SCGGGSCHH--HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCT
T ss_pred CcCCHHHHH--HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCC
Confidence 998864322 4455666666 89999999999987776555432 23899999999998863 4445555 45
Q ss_pred CCCeeecccCcCccccc----hhhhcCCCCCeeccccccCcccC-------ChhhhcCccCCeeecccccccccCCc
Q 037538 370 NLSLLGLEGNNLSGSVP----EVIGRLNKLEGLELNANKFSGFM-------PSSLGNLTVLSRLLMEENRFEGSIPP 435 (461)
Q Consensus 370 ~L~~L~Ls~n~l~~~~~----~~l~~~~~L~~L~L~~n~l~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~p~ 435 (461)
+|++|+|++|.+++..+ ..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|++.+..+.
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 89999999999986544 33466788999999999855332 33566788899999999998766443
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2.5e-23 Score=192.82 Aligned_cols=203 Identities=22% Similarity=0.284 Sum_probs=126.1
Q ss_pred CcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCC
Q 037538 244 LKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLE 323 (461)
Q Consensus 244 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~ 323 (461)
.+.++++++.++. +|..+. +++++|++++|.+++..+..|..+++|++|++++|+++..+ ...+.++++|+
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~------~~~~~~l~~L~ 88 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP------AGIFKELKNLE 88 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC------TTTTSSCTTCC
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC------hhhhcCCCCCC
Confidence 3444444444442 333222 45666666666666555556666666666666666665421 22345566666
Q ss_pred EEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccc
Q 037538 324 VLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNAN 403 (461)
Q Consensus 324 ~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n 403 (461)
+|++++|.+++..+..+..++ +|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 89 ~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 89 TLWVTDNKLQALPIGVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCcCCHhHccccc-CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 666666666643333344444 6777777777776666666667777777777777777555555667777777777777
Q ss_pred cCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCccc
Q 037538 404 KFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 404 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 456 (461)
++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++...
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 77765555677777777777777777755555566777777777777776543
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=1e-25 Score=215.75 Aligned_cols=237 Identities=16% Similarity=0.204 Sum_probs=142.1
Q ss_pred CCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCC--CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCC
Q 037538 64 HFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNL--TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGK 141 (461)
Q Consensus 64 ~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 141 (461)
.|..|.++.|++ ..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++.
T Consensus 35 vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 35 VCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 455788887754 34677888777665 3344455 6777777777777655444 45677777777777766543
Q ss_pred -CCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCC-CCccc-CCccCCCCCCCCEEECccC-CCccc-CCh
Q 037538 142 -IPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTS-NLTGN-IPAWVGNFSSLQVLLLARN-NLHGS-IPN 216 (461)
Q Consensus 142 -~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~~~~~-~~~ 216 (461)
+|..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++.
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 5556666777777777777666666666666777777777766 45542 4444555666666666666 55532 344
Q ss_pred hhhcCC-CCcEEecCCCCchhhccCCCCCcEEEccCccCc-cccChhhcCCCCCCEEEccccc-ccccCCccCCCCCCCC
Q 037538 217 ELGQLS-ALGFFTLYENFISDVGLTLPNLKIFAGGVNYFT-GSIPVSLSNASNLQVLDFAENG-LTGTIPENFGSLKDLV 293 (461)
Q Consensus 217 ~l~~l~-~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 293 (461)
.+..++ +|++|++++|.+ .++ +.++..+..+++|++|++++|. +++..+..+..+++|+
T Consensus 189 ~~~~l~~~L~~L~l~~~~~------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRK------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp HHHHSCTTCCEEECCSCGG------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred HHHhcccCCCEEEeCCCcc------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 444444 444444444311 222 2344455666777777777776 5555555666666677
Q ss_pred EEEcccCc-CcccCCCCchhhhhhcCCCCCCEEEccCC
Q 037538 294 RLNFDQNE-LGSREIGDLNFLKFLANCTSLEVLGLAQN 330 (461)
Q Consensus 294 ~L~L~~n~-l~~~~~~~~~~~~~l~~~~~L~~L~L~~n 330 (461)
+|++++|. +.. .....+.++++|+.|++++|
T Consensus 251 ~L~l~~~~~~~~------~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 251 HLSLSRCYDIIP------ETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EEECTTCTTCCG------GGGGGGGGCTTCCEEECTTS
T ss_pred EeeCCCCCCCCH------HHHHHHhcCCCCCEEeccCc
Confidence 77776663 222 12234455666666666655
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=4.8e-25 Score=215.26 Aligned_cols=248 Identities=17% Similarity=0.214 Sum_probs=155.7
Q ss_pred CCccCCCCCCCCEEECccCCCcccCChh----hhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhh---
Q 037538 190 IPAWVGNFSSLQVLLLARNNLHGSIPNE----LGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSL--- 262 (461)
Q Consensus 190 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l--- 262 (461)
++..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+. .+++.+|..+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~-----------------~l~~~~~~~~~~l 86 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG-----------------RVKDEIPEALRLL 86 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT-----------------SCGGGSHHHHHHH
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC-----------------ccccchhHHHHHH
Confidence 4455556677777777777776543332 445566666666554332 2333344333
Q ss_pred ----cCCCCCCEEEcccccccc----cCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCC---------CCCCEE
Q 037538 263 ----SNASNLQVLDFAENGLTG----TIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC---------TSLEVL 325 (461)
Q Consensus 263 ----~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~---------~~L~~L 325 (461)
..+++|++|++++|.+++ .++..+..+++|++|++++|.++..... .+...+..+ ++|++|
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA--KIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH--HHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH--HHHHHHHHHhhhhhcccCCCCcEE
Confidence 566777777777777765 3555666677777777777776542111 222333333 677777
Q ss_pred EccCCcCc-cccc---hHHHhccccccEEEccCCcCcc-----cCchhhhcCCCCCeeecccCcCc----cccchhhhcC
Q 037538 326 GLAQNGFG-GEMP---ISIANLSTHLRILTMGYNLMHG-----NIPVGIENLVNLSLLGLEGNNLS----GSVPEVIGRL 392 (461)
Q Consensus 326 ~L~~n~~~-~~~~---~~~~~~~~~L~~L~l~~n~l~~-----~~p~~~~~l~~L~~L~Ls~n~l~----~~~~~~l~~~ 392 (461)
++++|+++ +.++ ..+...+ +|++|++++|.++. ..+..+..+++|+.|+|++|.++ +.+|..+..+
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred ECCCCCCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 77777776 3333 2344444 77777777777762 23335667777777777777775 4566677777
Q ss_pred CCCCeeccccccCccc----CChhhhc--CccCCeeecccccccc----cCCccC-CCCCCCCEEEccCCCCcccC
Q 037538 393 NKLEGLELNANKFSGF----MPSSLGN--LTVLSRLLMEENRFEG----SIPPSL-GNCKKLQVLNLSSNNLNGTI 457 (461)
Q Consensus 393 ~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~l~~n~l~~----~~p~~l-~~l~~L~~L~ls~N~l~~~i 457 (461)
++|+.|+|++|++++. ++..+.. +++|+.|++++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 7777788877777754 4555533 7777788888877776 466666 55777788888888777654
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.4e-23 Score=194.60 Aligned_cols=208 Identities=19% Similarity=0.188 Sum_probs=106.5
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcE
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEI 178 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 178 (461)
..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..+.++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 34455555555555554 222 24555555555555555543 2 24555555555555555555444444555555555
Q ss_pred EEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCcccc
Q 037538 179 IRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSI 258 (461)
Q Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~ 258 (461)
|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+ .|++++|.+++..
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~--------------------~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT--------------------ELDLSYNQLQSLP 173 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC--------------------EEECCSSCCCCCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC--------------------EEECCCCCcCccC
Confidence 55555555544444455555555555555555533333333333222 2223333333333
Q ss_pred ChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccch
Q 037538 259 PVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPI 338 (461)
Q Consensus 259 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~ 338 (461)
+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .+++++.++++.|.++|.+|.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------------~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------------TCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------------CTTTTHHHHHHHHHTGGGBBC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------------cCcHHHHHHHHHHhCCCcccC
Confidence 3344555666666666666665555555666666666666665543 234555555555555555555
Q ss_pred HHHhc
Q 037538 339 SIANL 343 (461)
Q Consensus 339 ~~~~~ 343 (461)
++..+
T Consensus 241 ~~~~~ 245 (272)
T 3rfs_A 241 SAGSV 245 (272)
T ss_dssp TTSCB
T ss_pred ccccc
Confidence 44433
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=5.3e-24 Score=197.48 Aligned_cols=223 Identities=23% Similarity=0.217 Sum_probs=148.5
Q ss_pred EEECccCCCcccCChhhhcCCCCcEEecCCCCchhhc--cCCCCCcEEEccCccCccccChhhcCCCCCCEEEccccccc
Q 037538 202 VLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLT 279 (461)
Q Consensus 202 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 279 (461)
.+++..+.+... .....+++|+.|++++|.+..+. ..+++|+.|++++|.+++. ..+..+++|++|++++|.++
T Consensus 23 ~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 23 KANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC
T ss_pred HHHhcCcccccc--cccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC
Confidence 334444444322 34567788888888888775442 3467777777777777652 35677777777777777777
Q ss_pred ccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcc
Q 037538 280 GTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHG 359 (461)
Q Consensus 280 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 359 (461)
+..+..+..+++|++|++++|++++. .+..+..+++|+.|++++|.+++..+..+..++ +|++|++++|.+++
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVENQLQSL------PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-NLTELDLSYNQLQS 171 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCC------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCC
T ss_pred ccChhHhcCCcCCCEEECCCCcCCcc------CHHHhccCCCCCEEECCCCccCccCHHHhccCc-cCCEEECCCCCcCc
Confidence 66666677777777777777777652 233456667777777777777754444445554 77777777777776
Q ss_pred cCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCC
Q 037538 360 NIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGN 439 (461)
Q Consensus 360 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 439 (461)
..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+. ++.|+.+++..|.++|.+|.+++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence 5555566777777777777777766666667777777777777766532 445667777777777777776665
Q ss_pred CCC
Q 037538 440 CKK 442 (461)
Q Consensus 440 l~~ 442 (461)
++.
T Consensus 245 ~~~ 247 (272)
T 3rfs_A 245 VAP 247 (272)
T ss_dssp BCG
T ss_pred cCC
Confidence 544
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=3.4e-25 Score=216.36 Aligned_cols=173 Identities=22% Similarity=0.273 Sum_probs=98.6
Q ss_pred cChhhcCCCCCCEEEcccccccccCCccC----CCC---------CCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCE
Q 037538 258 IPVSLSNASNLQVLDFAENGLTGTIPENF----GSL---------KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEV 324 (461)
Q Consensus 258 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~----~~l---------~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~ 324 (461)
+|..+..+++|++|++++|.+++..+..+ ..+ ++|++|++++|+++..... .+...+..+++|++
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK--EWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH--HHHHHHHHCTTCCE
T ss_pred HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH--HHHHHHHhCCCcCE
Confidence 34445555666666666665543322222 222 5666666666666532110 12234556666666
Q ss_pred EEccCCcCccc-----cchHHHhccccccEEEccCCcCc----ccCchhhhcCCCCCeeecccCcCccc----cchhhhc
Q 037538 325 LGLAQNGFGGE-----MPISIANLSTHLRILTMGYNLMH----GNIPVGIENLVNLSLLGLEGNNLSGS----VPEVIGR 391 (461)
Q Consensus 325 L~L~~n~~~~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~p~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~ 391 (461)
|++++|+++.. .+..+..++ +|++|++++|.++ +.+|..+..+++|++|+|++|.+++. ++..+..
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCC-CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 66666666521 222333443 6677777777664 44566666667777777777776654 3444432
Q ss_pred --CCCCCeeccccccCcc----cCChhh-hcCccCCeeecccccccccC
Q 037538 392 --LNKLEGLELNANKFSG----FMPSSL-GNLTVLSRLLMEENRFEGSI 433 (461)
Q Consensus 392 --~~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~ 433 (461)
+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6677777777777765 356555 45677777777777776554
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=4.3e-24 Score=204.46 Aligned_cols=250 Identities=16% Similarity=0.183 Sum_probs=131.2
Q ss_pred CCcEEEccCCCCcccCCccCCCC--CCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchh-----hccCCCCCcEE
Q 037538 175 KLEIIRLGTSNLTGNIPAWVGNF--SSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD-----VGLTLPNLKIF 247 (461)
Q Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-----~~~~l~~L~~L 247 (461)
.++.++++++.+. +..+..+ +.++.+++++|.+.+..+. +..+++|++|++++|.+.. ....+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4778888887766 3344555 7788888888888766554 4456667777766665432 22345555555
Q ss_pred EccCccCccccChhhcCCCCCCEEEcccc-ccccc-CCccCCCCCCCCEEEcccC-cCcccCCCCchhhhhhcCCC-CCC
Q 037538 248 AGGVNYFTGSIPVSLSNASNLQVLDFAEN-GLTGT-IPENFGSLKDLVRLNFDQN-ELGSREIGDLNFLKFLANCT-SLE 323 (461)
Q Consensus 248 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~~~-~L~ 323 (461)
++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .++..+..++ +|+
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-----HVQVAVAHVSETIT 198 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-----HHHHHHHHSCTTCC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-----HHHHHHHhcccCCC
Confidence 55555555555555555555555555555 34432 3334445555555555555 55431 1334445555 555
Q ss_pred EEEccCC--cCc-cccchHHHhccccccEEEccCCc-CcccCchhhhcCCCCCeeecccCc-CccccchhhhcCCCCCee
Q 037538 324 VLGLAQN--GFG-GEMPISIANLSTHLRILTMGYNL-MHGNIPVGIENLVNLSLLGLEGNN-LSGSVPEVIGRLNKLEGL 398 (461)
Q Consensus 324 ~L~L~~n--~~~-~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~~~~L~~L 398 (461)
+|++++| .++ +.++..+..++ +|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCP-NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCT-TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EEEeCCCcccCCHHHHHHHHhhCC-CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 5555555 333 23344344443 55555555555 444444455555555555555553 221111234455555555
Q ss_pred ccccccCcccCChhhhcC-ccCCeeecccccccccCCccCC
Q 037538 399 ELNANKFSGFMPSSLGNL-TVLSRLLMEENRFEGSIPPSLG 438 (461)
Q Consensus 399 ~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~l~ 438 (461)
++++| ++.. .+..+ ..+..|++++|++++..|..++
T Consensus 278 ~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 278 QVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred eccCc-cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence 55555 2221 12222 2244444555555555554443
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=9.3e-23 Score=190.70 Aligned_cols=178 Identities=25% Similarity=0.314 Sum_probs=112.2
Q ss_pred CCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccc
Q 037538 266 SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLST 345 (461)
Q Consensus 266 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 345 (461)
+++++|++++|.+++..+..+..+++|++|++++|.+++... ...+++|+.|++++|+++ .+|..+..++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~- 100 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLP- 100 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--------CSCCTTCCEEECCSSCCS-SCCCCTTTCT-
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--------CCCCCcCCEEECCCCcCC-cCchhhccCC-
Confidence 455666666666655555556666666666666665554221 134566666666666665 4555444444
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecc
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 425 (461)
+|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..|..+++|+.|+++
T Consensus 101 ~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECC
Confidence 66666666666665555666667777777777777765555556667777777777777765444556667777777777
Q ss_pred cccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 426 ENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 426 ~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
+|+++ .+|..+..+++|+.+++++|++.
T Consensus 181 ~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 77776 56666666667777777777664
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2.4e-22 Score=184.04 Aligned_cols=191 Identities=23% Similarity=0.266 Sum_probs=140.0
Q ss_pred CCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCC
Q 037538 64 HFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIP 143 (461)
Q Consensus 64 ~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 143 (461)
+|+.|.|.+|.. ..++++++++.+. .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+++..+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 578899999963 3457888888886 5665554 688888888888887777778888888888888888887777
Q ss_pred cCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCC
Q 037538 144 TNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSA 223 (461)
Q Consensus 144 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 223 (461)
..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------- 148 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-------- 148 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH--------
Confidence 778888888888888888876666677778888888888887775555556677777777777777664333
Q ss_pred CcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 037538 224 LGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELG 303 (461)
Q Consensus 224 L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 303 (461)
..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 149 ------------------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 149 ------------------------------------GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ------------------------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ------------------------------------HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 23445566666666666666655556667777777777777766
Q ss_pred c
Q 037538 304 S 304 (461)
Q Consensus 304 ~ 304 (461)
.
T Consensus 193 c 193 (251)
T 3m19_A 193 C 193 (251)
T ss_dssp T
T ss_pred C
Confidence 5
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=4.7e-23 Score=194.92 Aligned_cols=202 Identities=19% Similarity=0.125 Sum_probs=155.6
Q ss_pred CCCCcEEEccCccCccccChhh--cCCCCCCEEEcccccccccCC----ccCCCCCCCCEEEcccCcCcccCCCCchhhh
Q 037538 241 LPNLKIFAGGVNYFTGSIPVSL--SNASNLQVLDFAENGLTGTIP----ENFGSLKDLVRLNFDQNELGSREIGDLNFLK 314 (461)
Q Consensus 241 l~~L~~L~l~~n~~~~~~~~~l--~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 314 (461)
.++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+ ..+.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~------~~~~ 163 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA------FSCE 163 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC------CCTT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch------hhHH
Confidence 3557777777777777777776 778888888888888876544 234568888888888888876 3345
Q ss_pred hhcCCCCCCEEEccCCcCccc--cch--HHHhccccccEEEccCCcCcccCch----hhhcCCCCCeeecccCcCccccc
Q 037538 315 FLANCTSLEVLGLAQNGFGGE--MPI--SIANLSTHLRILTMGYNLMHGNIPV----GIENLVNLSLLGLEGNNLSGSVP 386 (461)
Q Consensus 315 ~l~~~~~L~~L~L~~n~~~~~--~~~--~~~~~~~~L~~L~l~~n~l~~~~p~----~~~~l~~L~~L~Ls~n~l~~~~~ 386 (461)
.+..+++|++|++++|++.+. ++. .+..++ +|++|++++|.++. ++. .+..+++|++|+|++|.+.+..|
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP-AIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC-CCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCC-CCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence 567788888888888887643 211 123444 88999999998863 222 24678999999999999998778
Q ss_pred hhhhcC---CCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcc
Q 037538 387 EVIGRL---NKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 387 ~~l~~~---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 455 (461)
..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred hhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 777776 69999999999999 6787764 8999999999999963 44 6778999999999999975
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=9.4e-22 Score=183.87 Aligned_cols=201 Identities=20% Similarity=0.188 Sum_probs=86.3
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcE
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEI 178 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 178 (461)
.+++++++++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++..+ . +.+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCE
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCE
Confidence 33444444444444444 3333222 344444444444443333444444444444444444432211 1 34444444
Q ss_pred EEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCcccc
Q 037538 179 IRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSI 258 (461)
Q Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~ 258 (461)
|++++|.+. .+|..+..+++|++|++++|++++..+..+..+++|++|++++|.+ ++..
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l--------------------~~~~ 140 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL--------------------KTLP 140 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC--------------------CCCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC--------------------CccC
Confidence 444444444 3444444444444444444444433333333333333333333222 2222
Q ss_pred ChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcC
Q 037538 259 PVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGF 332 (461)
Q Consensus 259 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~ 332 (461)
+..+..+++|++|++++|++++..+..+..+++|+.|++++|+++. ++..+...++|+.+++++|.+
T Consensus 141 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-------ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-------IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCCCSEEECCSCCB
T ss_pred hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-------cChhhcccccCCeEEeCCCCc
Confidence 2233444555555555555554433444455555555555555542 222233334555555555544
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=191.16 Aligned_cols=199 Identities=16% Similarity=0.152 Sum_probs=129.5
Q ss_pred CCCCEEecCCCCCcccCch---hccCCCCCCEEeCCCCCCCCCCCcCC--CCCCCCCEEEccCCcCCCcCc----hhhcC
Q 037538 102 TNLTGINLFQNRFHGQIPE---EIGRLQKLQDLNLTYNYLSGKIPTNL--SHCTELRSFEASANDFIGQIP----DQLIS 172 (461)
Q Consensus 102 ~~L~~L~L~~n~~~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~----~~l~~ 172 (461)
..++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4578888888877532111 12235679999999999998888887 889999999999999887555 34567
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCccc--C--ChhhhcCCCCcEEecCCCCchhhc-------cCC
Q 037538 173 LTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGS--I--PNELGQLSALGFFTLYENFISDVG-------LTL 241 (461)
Q Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~-------~~l 241 (461)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|.+..+. ..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 89999999999999877778888999999999999987642 1 122356777777777777764321 223
Q ss_pred CCCcEEEccCccCccccChhhcCC---CCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 037538 242 PNLKIFAGGVNYFTGSIPVSLSNA---SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELG 303 (461)
Q Consensus 242 ~~L~~L~l~~n~~~~~~~~~l~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 303 (461)
++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|+++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence 444444444444444444333333 34444444444444 2333332 34444444444444
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.4e-21 Score=178.99 Aligned_cols=179 Identities=27% Similarity=0.346 Sum_probs=88.9
Q ss_pred CcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCC
Q 037538 244 LKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLE 323 (461)
Q Consensus 244 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~ 323 (461)
.+.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|++++. .+..+..+++|+
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~ 86 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL------SAGVFDDLTELG 86 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC------CTTTTTTCTTCC
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc------CHhHhccCCcCC
Confidence 445555555544 2333332 3555555555555555555555555555555555555441 222334444555
Q ss_pred EEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccc
Q 037538 324 VLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNAN 403 (461)
Q Consensus 324 ~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n 403 (461)
+|++++|++ ++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 87 ~L~L~~n~l-------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 87 TLGLANNQL-------------------------ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp EEECTTSCC-------------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcc-------------------------cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 555555544 4433444445555555555555555433334445555555555555
Q ss_pred cCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCccc
Q 037538 404 KFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 404 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 456 (461)
++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 55544444455555555555555555544444455555555555555555443
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.6e-21 Score=177.14 Aligned_cols=197 Identities=16% Similarity=0.188 Sum_probs=145.8
Q ss_pred CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCC-CCCCCCcCCCCCCCCCEEEccC-CcCCCcCchhhcCCCCCcEE
Q 037538 102 TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNY-LSGKIPTNLSHCTELRSFEASA-NDFIGQIPDQLISLTKLEII 179 (461)
Q Consensus 102 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L 179 (461)
+++++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |.+++..+..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 488999999999987666688889999999999997 7755556788899999999998 88887666788899999999
Q ss_pred EccCCCCcccCCccCCCCCCCC---EEECccC-CCcccCChhhhcCCCCc-EEecCCCCchhhccCCCCCcEEEccCccC
Q 037538 180 RLGTSNLTGNIPAWVGNFSSLQ---VLLLARN-NLHGSIPNELGQLSALG-FFTLYENFISDVGLTLPNLKIFAGGVNYF 254 (461)
Q Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~l~~L~~L~l~~n~~ 254 (461)
++++|.+++ +|. +..+++|+ +|++++| .+.+..+..+..+++|+ .|++++|.+..+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i----------------- 171 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV----------------- 171 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-----------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-----------------
Confidence 999999885 665 77888888 9999999 88866666677777777 777766655432
Q ss_pred ccccChhhcCCCCCCEEEccccc-ccccCCccCCCC-CCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCC
Q 037538 255 TGSIPVSLSNASNLQVLDFAENG-LTGTIPENFGSL-KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQN 330 (461)
Q Consensus 255 ~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n 330 (461)
|......++|++|++++|. +++..+..|..+ ++|+.|++++|+++..+.. .+++|+.|+++++
T Consensus 172 ----~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---------~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 172 ----QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---------GLEHLKELIARNT 236 (239)
T ss_dssp ----CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---------TCTTCSEEECTTC
T ss_pred ----CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---------HhccCceeeccCc
Confidence 2222222567777777774 665556666667 7777777777777653221 3566777777654
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=3.6e-21 Score=170.99 Aligned_cols=183 Identities=21% Similarity=0.226 Sum_probs=138.0
Q ss_pred CCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCC
Q 037538 63 VHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142 (461)
Q Consensus 63 ~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 142 (461)
...|.|.++.|... +++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..
T Consensus 4 ~C~C~~~~v~c~~~------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (208)
T 2o6s_A 4 RCSCSGTTVECYSQ------------GRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP 68 (208)
T ss_dssp TCEEETTEEECCSS------------CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEECCCEEEecCC------------Ccc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC
Confidence 45689999998642 222 334333 468999999999998666667889999999999999998666
Q ss_pred CcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCC
Q 037538 143 PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLS 222 (461)
Q Consensus 143 p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 222 (461)
+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..++
T Consensus 69 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 66778999999999999999876666788999999999999999976666788999999999999999976666678888
Q ss_pred CCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhc
Q 037538 223 ALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLS 263 (461)
Q Consensus 223 ~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 263 (461)
+|++|++++|.+. ..+++++.++++.|.++|.+|.+++
T Consensus 149 ~L~~L~l~~N~~~---~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 149 SLQYIWLHDNPWD---CTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp TCCEEECCSCCBC---CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred CccEEEecCCCee---cCCCCHHHHHHHHHhCCceeeccCc
Confidence 8888888777543 1233444444444444444444333
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.2e-21 Score=178.00 Aligned_cols=198 Identities=19% Similarity=0.195 Sum_probs=159.2
Q ss_pred CCCcEEEccCccCccccChhhcCCCCCCEEEccccc-ccccCCccCCCCCCCCEEEccc-CcCcccCCCCchhhhhhcCC
Q 037538 242 PNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENG-LTGTIPENFGSLKDLVRLNFDQ-NELGSREIGDLNFLKFLANC 319 (461)
Q Consensus 242 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~l~~~ 319 (461)
++++.|++++|.+++..+..+..+++|++|++++|. +++..+..|..+++|++|++++ |+++..+ +..+.++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~------~~~f~~l 104 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID------PDALKEL 104 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC------TTSEECC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC------HHHhCCC
Confidence 356777777777776666678888999999999996 8777677888899999999998 8887632 3456788
Q ss_pred CCCCEEEccCCcCccccchHHHhcccccc---EEEccCC-cCcccCchhhhcCCCCC-eeecccCcCccccchhhhcCCC
Q 037538 320 TSLEVLGLAQNGFGGEMPISIANLSTHLR---ILTMGYN-LMHGNIPVGIENLVNLS-LLGLEGNNLSGSVPEVIGRLNK 394 (461)
Q Consensus 320 ~~L~~L~L~~n~~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~p~~~~~l~~L~-~L~Ls~n~l~~~~~~~l~~~~~ 394 (461)
++|+.|++++|.+++ +|. +..+. +|+ +|++++| .+++..+..+..+++|+ .|++++|.++ .+|......++
T Consensus 105 ~~L~~L~l~~n~l~~-lp~-~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~ 180 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKM-FPD-LTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTK 180 (239)
T ss_dssp TTCCEEEEEEECCCS-CCC-CTTCC-BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCE
T ss_pred CCCCEEeCCCCCCcc-ccc-ccccc-ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCC
Confidence 899999999998885 665 55554 777 9999999 88877777788999999 9999999998 56554444489
Q ss_pred CCeecccccc-CcccCChhhhcC-ccCCeeecccccccccCCccCCCCCCCCEEEccCCC
Q 037538 395 LEGLELNANK-FSGFMPSSLGNL-TVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNN 452 (461)
Q Consensus 395 L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~ 452 (461)
|+.|++++|+ +++..+..|..+ ++|+.|++++|++++ +|.. .+++|+.|+++++.
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 9999999995 887777889999 999999999999984 5554 57889999998864
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=3.2e-21 Score=181.98 Aligned_cols=193 Identities=22% Similarity=0.306 Sum_probs=133.6
Q ss_pred hhcCCCCcEEecCCCCchhhc--cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEE
Q 037538 218 LGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRL 295 (461)
Q Consensus 218 l~~l~~L~~L~l~~n~l~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 295 (461)
...+++|+.|++++|.+..+. ..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 456778888888888775542 346777788887777765443 77777788888887777653 357777777888
Q ss_pred EcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeee
Q 037538 296 NFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLG 375 (461)
Q Consensus 296 ~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 375 (461)
++++|++++. ..+..+++|+.|++++|.+++..+ +..++ +|++|++++|.+++. +. +..+++|+.|+
T Consensus 113 ~l~~n~l~~~--------~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~-~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~ 179 (308)
T 1h6u_A 113 DLTSTQITDV--------TPLAGLSNLQVLYLDLNQITNISP--LAGLT-NLQYLSIGNAQVSDL-TP-LANLSKLTTLK 179 (308)
T ss_dssp ECTTSCCCCC--------GGGTTCTTCCEEECCSSCCCCCGG--GGGCT-TCCEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred ECCCCCCCCc--------hhhcCCCCCCEEECCCCccCcCcc--ccCCC-CccEEEccCCcCCCC-hh-hcCCCCCCEEE
Confidence 8877777652 126677777777777777764332 44554 777777777777753 32 67777777777
Q ss_pred cccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccc
Q 037538 376 LEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEG 431 (461)
Q Consensus 376 Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 431 (461)
+++|.+++..+ +..+++|+.|++++|++++.. .+..+++|+.|++++|++++
T Consensus 180 l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 77777774332 667777777777777777443 36777777777777777764
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1e-20 Score=178.45 Aligned_cols=192 Identities=23% Similarity=0.385 Sum_probs=96.6
Q ss_pred CCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEE
Q 037538 100 NLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEII 179 (461)
Q Consensus 100 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 179 (461)
.+++|++|++++|.+. .++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+. +.+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 3455555555555554 233 35555555555555555552 222 55555555555555555432 245555556666
Q ss_pred EccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccC
Q 037538 180 RLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIP 259 (461)
Q Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~ 259 (461)
++++|.+++ ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+. +. +
T Consensus 113 ~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~--------------------~~-~ 167 (308)
T 1h6u_A 113 DLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS--------------------DL-T 167 (308)
T ss_dssp ECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC--------------------CC-G
T ss_pred ECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC--------------------CC-h
Confidence 666655553 22 25555566666666665553221 444444444444443332 21 1
Q ss_pred hhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCc
Q 037538 260 VSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFG 333 (461)
Q Consensus 260 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~ 333 (461)
. +..+++|++|++++|.+++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|.++
T Consensus 168 ~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--------~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 168 P-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--------PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp G-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--------GGTTCTTCCEEEEEEEEEE
T ss_pred h-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--------cccCCCCCCEEEccCCeee
Confidence 1 4445555555555555543322 455555555555555555421 1455556666666666554
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=8.5e-21 Score=192.23 Aligned_cols=201 Identities=22% Similarity=0.313 Sum_probs=146.3
Q ss_pred CCCCCCCc-----ceeeE-EecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEe
Q 037538 59 WNDSVHFC-----NWVGV-TCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLN 132 (461)
Q Consensus 59 w~~~~~~c-----~w~gv-~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 132 (461)
|.....+| .|.++ .|.. .+++.|+++++++.+ +|..+ +++|++|++++|.++ .+| ..+++|++|+
T Consensus 36 W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 36 WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence 44444556 68888 6763 579999999999986 77655 389999999999998 677 4578999999
Q ss_pred CCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcc
Q 037538 133 LTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG 212 (461)
Q Consensus 133 Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 212 (461)
+++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++
T Consensus 107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred ccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence 99999995 777 665 99999999999987 666 68999999999999985 665 57899999999999986
Q ss_pred cCChhhhcCCCCcEEecCCCCchhhccCCCCC-------cEEEccCccCccccChhhcCCCCCCEEEcccccccccCCcc
Q 037538 213 SIPNELGQLSALGFFTLYENFISDVGLTLPNL-------KIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN 285 (461)
Q Consensus 213 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L-------~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 285 (461)
+|. +. ++|+.|++++|.+..+..-..+| +.|++++|.++ .+|..+..+++|++|++++|.+++.+|..
T Consensus 175 -lp~-l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 175 -LPE-LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp -CCC-CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred -cch-hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 666 54 78888888888776544311133 44455554444 24444444444555555555444444433
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.1e-20 Score=164.89 Aligned_cols=173 Identities=23% Similarity=0.214 Sum_probs=101.6
Q ss_pred CCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccc
Q 037538 266 SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLST 345 (461)
Q Consensus 266 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 345 (461)
+++++|++++|.+++..+..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..+..+..++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~- 100 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL------PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT- 100 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc------ChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc-
Confidence 4566666666666554444555666666666666665542 122345556666666666666543333344444
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecc
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 425 (461)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .++.|+.|+++
T Consensus 101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~ 173 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEW 173 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHH
T ss_pred CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHH
Confidence 66666666666665555555666677777777776665544456666677777777776553 34566666777
Q ss_pred cccccccCCccCCCCCCCCEEEccCCCCccc
Q 037538 426 ENRFEGSIPPSLGNCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 426 ~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 456 (461)
.|+++|.+|..++.++. +...|...|.
T Consensus 174 ~n~~~g~ip~~~~~l~~----~~~~C~~~~~ 200 (208)
T 2o6s_A 174 INKHSGVVRNSAGSVAP----DSAKCSGSGK 200 (208)
T ss_dssp HHHCTTTBBCTTSSBCT----TCSBBTTTCC
T ss_pred HHhCCceeeccCccccC----CccccccCCC
Confidence 77777777766665554 4444444443
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=4.2e-19 Score=179.86 Aligned_cols=187 Identities=19% Similarity=0.292 Sum_probs=110.4
Q ss_pred CCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEcc
Q 037538 103 NLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLG 182 (461)
Q Consensus 103 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 182 (461)
+++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 66777777776664 55544 256777777777666 555 345666666666666664 554 443 66666666
Q ss_pred CCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhh
Q 037538 183 TSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSL 262 (461)
Q Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l 262 (461)
+|.+++ +|. .+++|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. +
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-----------------------~l~~L~~L~Ls~N~L~~-lp~-l 178 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE-----------------------LPTSLEVLSVRNNQLTF-LPE-L 178 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----------------------CCTTCCEEECCSSCCSC-CCC-C
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC-----------------------cCCCcCEEECCCCCCCC-cch-h
Confidence 666664 444 45666666666666653 332 23455555555555554 444 4
Q ss_pred cCCCCCCEEEcccccccccCCccCCCCCCC-------CEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccc
Q 037538 263 SNASNLQVLDFAENGLTGTIPENFGSLKDL-------VRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGE 335 (461)
Q Consensus 263 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~ 335 (461)
. ++|++|++++|.++ .+|. +.. +| +.|++++|+++. ++..+..+++|+.|++++|.+++.
T Consensus 179 ~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-------lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-------IPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp C--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-------CCGGGGGSCTTEEEECCSSSCCHH
T ss_pred h--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-------cCHHHhcCCCCCEEEeeCCcCCCc
Confidence 3 67777777777776 4444 433 55 666666666653 334444566666666666666666
Q ss_pred cchHHHhc
Q 037538 336 MPISIANL 343 (461)
Q Consensus 336 ~~~~~~~~ 343 (461)
+|..+..+
T Consensus 246 ~p~~l~~l 253 (571)
T 3cvr_A 246 IRESLSQQ 253 (571)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHHh
Confidence 66665544
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=4.5e-19 Score=159.73 Aligned_cols=163 Identities=23% Similarity=0.258 Sum_probs=131.7
Q ss_pred CCCCCCCCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCC
Q 037538 57 SSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYN 136 (461)
Q Consensus 57 ~~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n 136 (461)
..|..+.+.|.|.++.|... .+. .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74 (229)
T ss_dssp -CCCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence 44666778999999999642 232 4555443 88999999999999877888899999999999999
Q ss_pred CCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCCh
Q 037538 137 YLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPN 216 (461)
Q Consensus 137 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 216 (461)
++.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+.
T Consensus 75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 997555566788999999999999998766677888999999999999988 7788888899999999999999866666
Q ss_pred hhhcCCCCcEEecCCCCch
Q 037538 217 ELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 217 ~l~~l~~L~~L~l~~n~l~ 235 (461)
.+..+++|+.|++++|.+.
T Consensus 154 ~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTCTTCCEEECTTSCBC
T ss_pred HHhCCCCCCEEEeeCCCcc
Confidence 6777888888887777664
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.6e-19 Score=172.10 Aligned_cols=165 Identities=18% Similarity=0.141 Sum_probs=115.2
Q ss_pred ccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEccc-CcCcccCCCCchhhhhhcCC-CCCCEEEccC
Q 037538 252 NYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQ-NELGSREIGDLNFLKFLANC-TSLEVLGLAQ 329 (461)
Q Consensus 252 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~l~~~-~~L~~L~L~~ 329 (461)
|+++...|..+..+++|++|++++|.++...+..+....++..+++.+ +++..... ..+..+ ..++.|++++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~------~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER------NSFVGLSFESVILWLNK 163 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT------TSSTTSBSSCEEEECCS
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc------cchhhcchhhhhhcccc
Confidence 344444456678889999999999999877776777777888888866 55655322 223333 4688899999
Q ss_pred CcCccccchHHHhccccccEEEccC-CcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCccc
Q 037538 330 NGFGGEMPISIANLSTHLRILTMGY-NLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGF 408 (461)
Q Consensus 330 n~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 408 (461)
|+++ .++....... +++++++.+ |.++...+..|..+++|+.|++++|+++. +|.. .+.+|+.|.+.++.-...
T Consensus 164 N~i~-~i~~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 164 NGIQ-EIHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKK 238 (350)
T ss_dssp SCCC-EECTTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCC
T ss_pred cccc-CCChhhcccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCc
Confidence 9998 5655555544 789999976 45554333467889999999999999984 4432 244555555555544446
Q ss_pred CChhhhcCccCCeeeccccc
Q 037538 409 MPSSLGNLTVLSRLLMEENR 428 (461)
Q Consensus 409 ~~~~~~~l~~L~~L~l~~n~ 428 (461)
+| .+.++++|+.+++.++.
T Consensus 239 lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 239 LP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CC-CTTTCCSCCEEECSCHH
T ss_pred CC-CchhCcChhhCcCCCCc
Confidence 67 57888999999987654
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=2.9e-19 Score=171.72 Aligned_cols=245 Identities=17% Similarity=0.173 Sum_probs=146.2
Q ss_pred CCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCC
Q 037538 64 HFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIP 143 (461)
Q Consensus 64 ~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 143 (461)
+.|.|..|.|.. ++++ .+|..+ .+++++|+|++|+++...+.+|..+++|++|+|++|++.+.+|
T Consensus 7 C~C~~~~v~C~~------------~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~ 71 (350)
T 4ay9_X 7 CHCSNRVFLCQE------------SKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71 (350)
T ss_dssp SEEETTEEEEES------------TTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC
T ss_pred cEeeCCEEEecC------------CCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC
Confidence 347777777753 3344 556555 3678899999999885445578888899999999888766555
Q ss_pred c-CCCCCCCCCE-EEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccC-CCcccCChhhhc
Q 037538 144 T-NLSHCTELRS-FEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARN-NLHGSIPNELGQ 220 (461)
Q Consensus 144 ~-~~~~l~~L~~-L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~ 220 (461)
. .|.++++++. +.+++|+++...|..|.++++|++|++++|.+....+..+....++..+++.++ .+....+..+..
T Consensus 72 ~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~ 151 (350)
T 4ay9_X 72 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151 (350)
T ss_dssp TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhh
Confidence 4 5677877765 555667777666777888888888888888887555555555666777777553 344222222332
Q ss_pred CCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEccc-ccccccCCccCCCCCCCCEEEccc
Q 037538 221 LSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAE-NGLTGTIPENFGSLKDLVRLNFDQ 299 (461)
Q Consensus 221 l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~ 299 (461)
+. ..++.|++++|.++. ++.......+|+++++.+ |.++...+..|..+++|++|++++
T Consensus 152 ~~-------------------~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 152 LS-------------------FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp SB-------------------SSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred cc-------------------hhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 21 123344444444442 333334455677777764 444433334566777777777777
Q ss_pred CcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccC
Q 037538 300 NELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGY 354 (461)
Q Consensus 300 n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~ 354 (461)
|+++..+.. .+.+|+.|.+.++.--..+|. +..++ +|+.+++.+
T Consensus 212 N~l~~lp~~---------~~~~L~~L~~l~~~~l~~lP~-l~~l~-~L~~l~l~~ 255 (350)
T 4ay9_X 212 TRIHSLPSY---------GLENLKKLRARSTYNLKKLPT-LEKLV-ALMEASLTY 255 (350)
T ss_dssp SCCCCCCSS---------SCTTCCEEECTTCTTCCCCCC-TTTCC-SCCEEECSC
T ss_pred CCcCccChh---------hhccchHhhhccCCCcCcCCC-chhCc-ChhhCcCCC
Confidence 776653221 134555555544432223442 33333 455555543
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=2.9e-18 Score=153.34 Aligned_cols=158 Identities=22% Similarity=0.258 Sum_probs=129.0
Q ss_pred CCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCC
Q 037538 63 VHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142 (461)
Q Consensus 63 ~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 142 (461)
.+.|.|..+.|. +++++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus 8 ~C~C~~~~v~c~------------~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~ 72 (220)
T 2v9t_B 8 ACTCSNNIVDCR------------GKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72 (220)
T ss_dssp TSEEETTEEECT------------TSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC
T ss_pred CCEECCCEEEcC------------CCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC
Confidence 345667666664 34444 4555444 68999999999998767778889999999999999998777
Q ss_pred CcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCC
Q 037538 143 PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLS 222 (461)
Q Consensus 143 p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 222 (461)
|..|.++++|++|++++|.++...+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++
T Consensus 73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152 (220)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC
Confidence 88899999999999999999865555678899999999999999987788888999999999999999977777788888
Q ss_pred CCcEEecCCCCch
Q 037538 223 ALGFFTLYENFIS 235 (461)
Q Consensus 223 ~L~~L~l~~n~l~ 235 (461)
+|+.|++++|.+.
T Consensus 153 ~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 153 AIQTMHLAQNPFI 165 (220)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEeCCCCcC
Confidence 8888888888764
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.4e-18 Score=162.47 Aligned_cols=183 Identities=25% Similarity=0.334 Sum_probs=135.2
Q ss_pred ecCCCCchhhc--cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccc
Q 037538 228 TLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSR 305 (461)
Q Consensus 228 ~l~~n~l~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 305 (461)
.+..+.+.+.. ..+++|+.|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|+.|++++|++++.
T Consensus 30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp HTTCSCTTSEECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG
T ss_pred HhcCCCcccccchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC
Confidence 34444443321 2367788888888887653 3 47778888888888888876544 78888888888888887652
Q ss_pred CCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCcccc
Q 037538 306 EIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSV 385 (461)
Q Consensus 306 ~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 385 (461)
..+..+++|+.|++++|++++ + ..+..++ +|++|++++|.+++. ..+..+++|+.|++++|.+++..
T Consensus 106 --------~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 106 --------SSLKDLKKLKSLSLEHNGISD-I-NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp --------GGGTTCTTCCEEECTTSCCCC-C-GGGGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred --------hhhccCCCCCEEECCCCcCCC-C-hhhcCCC-CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 236778888888888888874 3 3455555 788888888888754 46778888888888888887554
Q ss_pred chhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccc
Q 037538 386 PEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEG 431 (461)
Q Consensus 386 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 431 (461)
+ +..+++|+.|++++|++++ ++ .+..+++|+.|++++|++++
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred h--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 4 7788888888888888875 33 47788888888888888875
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=154.40 Aligned_cols=154 Identities=20% Similarity=0.261 Sum_probs=82.3
Q ss_pred CEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhcccccc
Q 037538 269 QVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLR 348 (461)
Q Consensus 269 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~ 348 (461)
+.+++++|.++. +|..+. +.+++|++++|++++... ...+..+++|+.|++++|+++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~-----~~~~~~l~~L~~L~L~~N~i~--------------- 70 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEA-----TGIFKKLPQLRKINFSNNKIT--------------- 70 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECC-----CCCGGGCTTCCEEECCSSCCC---------------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCc-----hhhhccCCCCCEEECCCCcCC---------------
Confidence 477777777763 444332 345666666666654211 112344455555555555544
Q ss_pred EEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeeccccc
Q 037538 349 ILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENR 428 (461)
Q Consensus 349 ~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 428 (461)
+..+..+..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..|..|..+++|+.|++++|+
T Consensus 71 ----------~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 71 ----------DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp ----------EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred ----------EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc
Confidence 4444445555555555555555554444445555555555555555555555555555555555555555
Q ss_pred ccccCCccCCCCCCCCEEEccCCCCcc
Q 037538 429 FEGSIPPSLGNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 429 l~~~~p~~l~~l~~L~~L~ls~N~l~~ 455 (461)
+++..|..+..+++|+.|++++|++.+
T Consensus 141 l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 141 ITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 555555555555555555555555543
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=1.1e-17 Score=149.72 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=129.7
Q ss_pred EEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCc-hhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCC
Q 037538 82 VLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIP-EEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAN 160 (461)
Q Consensus 82 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 160 (461)
.++++++.++ .+|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4555666665 4666553 467899999999987644 45889999999999999999777778999999999999999
Q ss_pred cCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCch
Q 037538 161 DFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 161 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 235 (461)
.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999888888999999999999999999888889999999999999999999888888998888888888888764
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=2.6e-18 Score=153.75 Aligned_cols=152 Identities=22% Similarity=0.292 Sum_probs=77.7
Q ss_pred CEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhcccccc
Q 037538 269 QVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLR 348 (461)
Q Consensus 269 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~ 348 (461)
+.++++++.++. +|..+. ++++.|++++|++++.. +..+..+++|+.|++++|.+++..|..+..++ +|+
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~------~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~ 83 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIP------PGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLN 83 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEEC------TTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCC
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcC------HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCC
Confidence 567777777663 444332 56666666666666422 22344555566666655555544444444443 455
Q ss_pred EEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeeccccc
Q 037538 349 ILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENR 428 (461)
Q Consensus 349 ~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 428 (461)
+|++++|.+++..+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 55555555543333334444555555555555554444444445555555555555544444444444555555555544
Q ss_pred cc
Q 037538 429 FE 430 (461)
Q Consensus 429 l~ 430 (461)
+.
T Consensus 164 ~~ 165 (220)
T 2v9t_B 164 FI 165 (220)
T ss_dssp EE
T ss_pred cC
Confidence 43
No 107
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=9.3e-20 Score=191.10 Aligned_cols=257 Identities=18% Similarity=0.171 Sum_probs=126.4
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCCCCCCCC-CCCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEe---
Q 037538 33 TIEADKLALLDFKNHLTQDPLQIMSSWND-SVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGIN--- 108 (461)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~-~~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~--- 108 (461)
..+.++.+++++..+.....+.....|.. ....+.|.++.+.. ++++.+++.++.+.. .+..+.....|+.+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~ 205 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDE 205 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhHhhcCccCcccccC
Confidence 45677889999988765444555556643 34567788877764 789999998888764 333333333333333
Q ss_pred --cCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCC
Q 037538 109 --LFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNL 186 (461)
Q Consensus 109 --L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 186 (461)
++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++++++|++|+|++|.+
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 2233333 45677888999999999999988 78888888999999999999988 7888899999999999999999
Q ss_pred cccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhc-cCC----CCCcEEEccCccCccccChh
Q 037538 187 TGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG-LTL----PNLKIFAGGVNYFTGSIPVS 261 (461)
Q Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l----~~L~~L~l~~n~~~~~~~~~ 261 (461)
+ .+|..++++++|++|++++|.++ .+|..++.+++|++|++++|.+.... ..+ .....+++++|.+++.+|.
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~- 359 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH- 359 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-
T ss_pred C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-
Confidence 8 77888999999999999999987 77888999999999999999885321 101 1112356788888887774
Q ss_pred hcCCCCCCEEEcccc--------cccccCCccCCCCCCCCEEEcccCcCc
Q 037538 262 LSNASNLQVLDFAEN--------GLTGTIPENFGSLKDLVRLNFDQNELG 303 (461)
Q Consensus 262 l~~~~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~ 303 (461)
.|+.|+++.| .+.+..+..+..+..+....++.|-+.
T Consensus 360 -----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 360 -----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -----C-----------------------------------------CCC
T ss_pred -----ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 4556666666 223333334455556666667777664
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=4.2e-18 Score=159.16 Aligned_cols=184 Identities=24% Similarity=0.286 Sum_probs=147.8
Q ss_pred ECccCCCcccCChhhhcCCCCcEEecCCCCchhhc--cCCCCCcEEEccCccCccccChhhcCCCCCCEEEccccccccc
Q 037538 204 LLARNNLHGSIPNELGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGT 281 (461)
Q Consensus 204 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 281 (461)
.+..+.+.+. ..+..+++|+.|++++|.+..+. ..+++|+.|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 30 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 30 NLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp HTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG
T ss_pred HhcCCCcccc--cchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC
Confidence 3444444432 23567888999999999886543 457899999999999987554 88999999999999998763
Q ss_pred CCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccC
Q 037538 282 IPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNI 361 (461)
Q Consensus 282 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 361 (461)
+.+..+++|++|++++|++++. ..+..+++|+.|++++|.+++. ..+..++ +|++|++++|.+++..
T Consensus 106 --~~l~~l~~L~~L~L~~n~i~~~--------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 106 --SSLKDLKKLKSLSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQISDIV 172 (291)
T ss_dssp --GGGTTCTTCCEEECTTSCCCCC--------GGGGGCTTCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCCCG
T ss_pred --hhhccCCCCCEEECCCCcCCCC--------hhhcCCCCCCEEEccCCcCCcc--hhhccCC-CCCEEEccCCccccch
Confidence 3488999999999999998762 3567889999999999999854 4566665 8999999999998754
Q ss_pred chhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCccc
Q 037538 362 PVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGF 408 (461)
Q Consensus 362 p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 408 (461)
+ +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+++..
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred h--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 4 8889999999999999985 44 488899999999999998753
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=5.2e-18 Score=173.63 Aligned_cols=186 Identities=24% Similarity=0.280 Sum_probs=105.7
Q ss_pred CEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhc--cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccc
Q 037538 201 QVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGL 278 (461)
Q Consensus 201 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 278 (461)
..+.+..+.+.+.. .+..+++|+.|++++|.+..+. ..+++|+.|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 24 ~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 24 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HHHhccCCCccccc--chhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 33444444544332 2566777888888777765432 335666666666666665433 56666666666666666
Q ss_pred cccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCc
Q 037538 279 TGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMH 358 (461)
Q Consensus 279 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 358 (461)
.+. +.+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|.+++. ..+..++ +|+.|++++|.+.
T Consensus 100 ~~l--~~l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~-~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 100 KDL--SSLKDLKKLKSLSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQIS 166 (605)
T ss_dssp CCC--TTSTTCTTCCEEECTTSCCCCC--------GGGGGCTTCSEEECCSSCCCCC--GGGGSCT-TCSEEECCSSCCC
T ss_pred CCC--hhhccCCCCCEEEecCCCCCCC--------ccccCCCccCEEECCCCccCCc--hhhcccC-CCCEEECcCCcCC
Confidence 532 2456666666666666666541 2345556666666666666532 3344443 5666666666665
Q ss_pred ccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcc
Q 037538 359 GNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSG 407 (461)
Q Consensus 359 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 407 (461)
+..| +..+++|+.|+|++|.+.+. + .+..+++|+.|+|++|++++
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEEC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcC
Confidence 4433 55556666666666666532 2 35555666666666665554
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=6.5e-18 Score=163.02 Aligned_cols=133 Identities=20% Similarity=0.163 Sum_probs=67.8
Q ss_pred CCCEEecCCCCCcccCchhcc-CCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEc
Q 037538 103 NLTGINLFQNRFHGQIPEEIG-RLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRL 181 (461)
Q Consensus 103 ~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 181 (461)
.++.|+|++|++++..+..+. .+++|++|++++|++++..+..|..+++|++|++++|++....+..|.++++|++|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 355555555555544444444 5555555555555555444444555555555555555555444444555555555555
Q ss_pred cCCCCcccCCccCCCCCCCCEEECccCCCcccCChhh---hcCCCCcEEecCCCCch
Q 037538 182 GTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNEL---GQLSALGFFTLYENFIS 235 (461)
Q Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~n~l~ 235 (461)
++|.+.+..+..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+.
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 5555554444555555555555555555553222222 34555555555555554
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=7.8e-18 Score=151.61 Aligned_cols=152 Identities=20% Similarity=0.262 Sum_probs=77.2
Q ss_pred CCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccc
Q 037538 268 LQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHL 347 (461)
Q Consensus 268 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L 347 (461)
.+.++.+++.++ .+|..+. ++|++|++++|++.+ ..+..+..+++|+.|++++|++++..+..+..++ +|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L 90 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITK------LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-QL 90 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCc------cCHHHhhCccCCcEEECCCCCCCCcChhhcccCC-Cc
Confidence 456777666665 3443332 566666666666665 2233445556666666666655422222233333 55
Q ss_pred cEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccc
Q 037538 348 RILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEEN 427 (461)
Q Consensus 348 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 427 (461)
++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 55555555555444444444555555555555554 44444455555555555555555433344444555555555555
Q ss_pred ccc
Q 037538 428 RFE 430 (461)
Q Consensus 428 ~l~ 430 (461)
++.
T Consensus 170 ~~~ 172 (229)
T 3e6j_A 170 PWD 172 (229)
T ss_dssp CBC
T ss_pred Ccc
Confidence 544
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=3.4e-18 Score=175.00 Aligned_cols=172 Identities=22% Similarity=0.282 Sum_probs=89.8
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcE
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEI 178 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 178 (461)
..+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+.+..| +..+++|+.|++++|.+.+ + +.+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 44555666666666554 233 35556666666666665553222 5555566666666555543 2 24555555555
Q ss_pred EEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCcccc
Q 037538 179 IRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSI 258 (461)
Q Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~ 258 (461)
|++++|.+.+ + ..+..+++|+.|++++|.+++. ..+..++ +|+.|++++|.+++..
T Consensus 114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~--------------------~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLT--------------------KLDTLSLEDNQISDIV 169 (605)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCT--------------------TCSEEECCSSCCCCCG
T ss_pred EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccC--------------------CCCEEECcCCcCCCch
Confidence 5555555553 1 2345555555555555555532 3344433 4444444444444433
Q ss_pred ChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 037538 259 PVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGS 304 (461)
Q Consensus 259 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 304 (461)
| +..+++|++|++++|.+++. +.+..+++|+.|+|++|.+.+
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 3 55556666666666655542 235555666666666665554
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=5.7e-18 Score=148.83 Aligned_cols=154 Identities=16% Similarity=0.222 Sum_probs=92.0
Q ss_pred cCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHh
Q 037538 263 SNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIAN 342 (461)
Q Consensus 263 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~ 342 (461)
..+++|++|++++|.++ .+| .+..+++|++|++++|.+.. ...+..++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--------~~~l~~l~---------------------- 88 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--------YNPISGLS---------------------- 88 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--------CGGGTTCT----------------------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--------chhhhcCC----------------------
Confidence 34456666666666655 233 35555555555555553322 11233344
Q ss_pred ccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeecccccc-CcccCChhhhcCccCCe
Q 037538 343 LSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANK-FSGFMPSSLGNLTVLSR 421 (461)
Q Consensus 343 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 421 (461)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+ ++ .+| .+..+++|+.
T Consensus 89 ---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~ 163 (197)
T 4ezg_A 89 ---NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKS 163 (197)
T ss_dssp ---TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCE
T ss_pred ---CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCE
Confidence 55555555555555455556666777777777777776666667777777777777776 44 344 5667777777
Q ss_pred eecccccccccCCccCCCCCCCCEEEccCCCCcc
Q 037538 422 LLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 422 L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 455 (461)
|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 164 L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 164 LNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred EECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 7777777764 33 56677777777777777754
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=5.5e-18 Score=148.91 Aligned_cols=152 Identities=18% Similarity=0.220 Sum_probs=98.4
Q ss_pred CCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCC
Q 037538 240 TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC 319 (461)
Q Consensus 240 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~ 319 (461)
.+++|+.+++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++ ..+..+..+
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~------~~~~~l~~l 111 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTS------DKIPNLSGL 111 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBG------GGSCCCTTC
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCc------ccChhhcCC
Confidence 3678999999999998 556 6889999999999999765 34578899999999999999986 344456677
Q ss_pred CCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeec
Q 037538 320 TSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLE 399 (461)
Q Consensus 320 ~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~ 399 (461)
++|+.|++++|.+++..+..+..++ +|++|++++|...+.+| .+..+++|+.|++++|.+++ ++ .+..+++|+.|+
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~-~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLP-KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLY 187 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCS-SCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEE
T ss_pred CCCCEEEecCCccCcHhHHHHhhCC-CCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEE
Confidence 7777777777777655555554443 55555555554212233 34444455555555544442 22 334444444444
Q ss_pred cccccC
Q 037538 400 LNANKF 405 (461)
Q Consensus 400 L~~n~l 405 (461)
+++|++
T Consensus 188 l~~N~i 193 (197)
T 4ezg_A 188 AFSQTI 193 (197)
T ss_dssp ECBC--
T ss_pred eeCccc
Confidence 444443
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.6e-17 Score=160.26 Aligned_cols=175 Identities=21% Similarity=0.188 Sum_probs=121.2
Q ss_pred cEEecCCCCchhhccCCC-CCcEEEccCccCccccChhhc-CCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcC
Q 037538 225 GFFTLYENFISDVGLTLP-NLKIFAGGVNYFTGSIPVSLS-NASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNEL 302 (461)
Q Consensus 225 ~~L~l~~n~l~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 302 (461)
+.++++++.+..+...++ .++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|+|++|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 577888887777665443 467788888887776666666 777888888888887777777777778888888888877
Q ss_pred cccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhh---hcCCCCCeeecccC
Q 037538 303 GSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI---ENLVNLSLLGLEGN 379 (461)
Q Consensus 303 ~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~---~~l~~L~~L~Ls~n 379 (461)
+.. .+..+..+++|+.|++++|.+++..+..+..++ +|++|++++|.+++..+..+ ..+++|+.|+|++|
T Consensus 101 ~~~------~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 101 HTL------DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CEE------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred CcC------CHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 652 233456677777777777777765566666665 77777777777775333333 45777777777777
Q ss_pred cCccccchhhhcCCC--CCeeccccccCc
Q 037538 380 NLSGSVPEVIGRLNK--LEGLELNANKFS 406 (461)
Q Consensus 380 ~l~~~~~~~l~~~~~--L~~L~L~~n~l~ 406 (461)
++++..+..+..++. ++.|+|++|.+.
T Consensus 174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 777555556666665 367777777765
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.5e-20 Score=191.37 Aligned_cols=184 Identities=19% Similarity=0.143 Sum_probs=85.9
Q ss_pred CCCCcEEEccCccCccccChhhcCCCCCCEEEccccc-------------ccccCCccCCCCCCCCEEE-cccCcCcccC
Q 037538 241 LPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENG-------------LTGTIPENFGSLKDLVRLN-FDQNELGSRE 306 (461)
Q Consensus 241 l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~ 306 (461)
.+.|+.|+++.|.++ .+|..++.+++|++|++++|. ..+..|..++.+++|+.|+ ++.|.+....
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 344555555555554 456666666666666665543 2333444444444555544 3333221100
Q ss_pred CCCc--hhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccc
Q 037538 307 IGDL--NFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGS 384 (461)
Q Consensus 307 ~~~~--~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 384 (461)
...+ .....+. ...|+.|++++|.+++ +|. +..++ +|+.|++++|.++ .+|..++.+++|+.|+|++|.+++
T Consensus 427 ~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~-lp~-~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 427 SKFLLENSVLKME-YADVRVLHLAHKDLTV-LCH-LEQLL-LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHH-HTTCSEEECTTSCCSS-CCC-GGGGT-TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhcccccccC-ccCceEEEecCCCCCC-CcC-ccccc-cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 0000 0000000 0135555555555543 343 44443 5555555555555 444455555555555555555553
Q ss_pred cchhhhcCCCCCeeccccccCcccC-ChhhhcCccCCeeeccccccccc
Q 037538 385 VPEVIGRLNKLEGLELNANKFSGFM-PSSLGNLTVLSRLLMEENRFEGS 432 (461)
Q Consensus 385 ~~~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~ 432 (461)
+| .++.+++|+.|+|++|++++.. |..++.+++|+.|++++|++++.
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 34 4555555555555555555443 55555555555555555555543
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=3.6e-17 Score=142.98 Aligned_cols=132 Identities=24% Similarity=0.294 Sum_probs=89.9
Q ss_pred CEEEccCCcCccccchHHHhccccccEEEccCCcCcccCch-hhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccc
Q 037538 323 EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPV-GIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELN 401 (461)
Q Consensus 323 ~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~ 401 (461)
+.+++++|+++ .+|..+. .++++|++++|.+++..+. .+..+++|++|+|++|.+++..|..+.++++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 45666666664 4554332 2667777777776654443 36677777777777777776667777777777777777
Q ss_pred cccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCC
Q 037538 402 ANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 402 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
+|++++..+..|..+++|+.|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 777776666667777777777777777777777777777777777777777766543
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.4e-17 Score=151.57 Aligned_cols=169 Identities=23% Similarity=0.319 Sum_probs=93.9
Q ss_pred CCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEE
Q 037538 100 NLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEII 179 (461)
Q Consensus 100 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 179 (461)
.+.+++.++++++.++ .++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+ +.++++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3455566666666665 233 3566677777777777666 444 56667777777777777664333 6667777777
Q ss_pred EccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccC
Q 037538 180 RLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIP 259 (461)
Q Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~ 259 (461)
++++|++++ ++. +.. ++|++|++++|.+++. ..+..+++|+.|++++|.+. +. +
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~--------------------~~-~ 144 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK--------------------SI-V 144 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC--------------------BC-G
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC--------------------CC-h
Confidence 777777664 332 222 6677777777766642 23444444444444443332 11 1
Q ss_pred hhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 037538 260 VSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELG 303 (461)
Q Consensus 260 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 303 (461)
.+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.
T Consensus 145 -~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 145 -MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp -GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred -HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 244455555555555555543 34445555555555555444
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.4e-17 Score=151.61 Aligned_cols=169 Identities=20% Similarity=0.261 Sum_probs=133.9
Q ss_pred CCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCC
Q 037538 242 PNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTS 321 (461)
Q Consensus 242 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~ 321 (461)
.++..++++.+.+++.. .+..+++|++|++++|.++. ++ .+..+++|+.|++++|++++. +. +..+++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-------~~-l~~l~~ 86 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-------SP-LKDLTK 86 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-------GG-GTTCSS
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-------hh-hccCCC
Confidence 34556667777776533 46778899999999998874 34 688889999999999998863 22 778899
Q ss_pred CCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccc
Q 037538 322 LEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELN 401 (461)
Q Consensus 322 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~ 401 (461)
|+.|++++|++++ ++.... ++|++|++++|.+++ ++ .+..+++|+.|++++|++++. + .+..+++|+.|+++
T Consensus 87 L~~L~L~~N~l~~-l~~~~~---~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 87 LEELSVNRNRLKN-LNGIPS---ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLH 158 (263)
T ss_dssp CCEEECCSSCCSC-CTTCCC---SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECT
T ss_pred CCEEECCCCccCC-cCcccc---CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECC
Confidence 9999999999875 433222 489999999999886 33 588889999999999999854 4 67888999999999
Q ss_pred cccCcccCChhhhcCccCCeeeccccccccc
Q 037538 402 ANKFSGFMPSSLGNLTVLSRLLMEENRFEGS 432 (461)
Q Consensus 402 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 432 (461)
+|++++. ..+..+++|+.|++++|++++.
T Consensus 159 ~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 159 GNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999865 6788889999999999998865
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=2e-19 Score=183.03 Aligned_cols=209 Identities=19% Similarity=0.133 Sum_probs=154.7
Q ss_pred CCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCc-hhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEE-
Q 037538 195 GNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFI-SDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLD- 272 (461)
Q Consensus 195 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~- 272 (461)
..++.|+.|++++|.+. .+|..++.+++|+.|++++|.. ..... .+..+...+..|..++.+++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~--------ll~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL--------LMRALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH--------HHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH--------HHHhcccccCCHHHHHHHHhcccCcc
Confidence 45677888888888886 6788888888888888865531 11100 0111233455666777777777777
Q ss_pred cccccccccCCc-----cCC--CCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccc
Q 037538 273 FAENGLTGTIPE-----NFG--SLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLST 345 (461)
Q Consensus 273 l~~n~l~~~~~~-----~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 345 (461)
++.|.+.....- .+. ....|+.|++++|.+++. +. +..+++|+.|++++|.++ .+|..+..++
T Consensus 417 l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-------p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~- 486 (567)
T 1dce_A 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-------CH-LEQLLLVTHLDLSHNRLR-ALPPALAALR- 486 (567)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-------CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT-
T ss_pred hhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCC-------cC-ccccccCcEeecCccccc-ccchhhhcCC-
Confidence 454433211000 000 013599999999999863 33 788899999999999999 8899998887
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCcCcccc-chhhhcCCCCCeeccccccCcccCCh---hhhcCccCCe
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSV-PEVIGRLNKLEGLELNANKFSGFMPS---SLGNLTVLSR 421 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~ 421 (461)
+|+.|++++|.+++ +| .+..+++|+.|+|++|.+++.. |..++.+++|+.|++++|++++..|. .+..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 99999999999997 67 7999999999999999999876 99999999999999999999976543 2445788888
Q ss_pred eec
Q 037538 422 LLM 424 (461)
Q Consensus 422 L~l 424 (461)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 764
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=7.2e-17 Score=137.92 Aligned_cols=138 Identities=18% Similarity=0.168 Sum_probs=109.4
Q ss_pred CCCCCEEEccCCcCc-cccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCe
Q 037538 319 CTSLEVLGLAQNGFG-GEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEG 397 (461)
Q Consensus 319 ~~~L~~L~L~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~ 397 (461)
.++|+.|++++|.++ +.+|..+..++ +|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 366777777777776 56666666665 888888888888764 56788889999999999998778888878899999
Q ss_pred eccccccCccc-CChhhhcCccCCeeecccccccccCC---ccCCCCCCCCEEEccCCCCcccCCCC
Q 037538 398 LELNANKFSGF-MPSSLGNLTVLSRLLMEENRFEGSIP---PSLGNCKKLQVLNLSSNNLNGTIPKE 460 (461)
Q Consensus 398 L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~ls~N~l~~~ip~~ 460 (461)
|++++|++++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+. ++|++
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 99999988853 22678888999999999999986554 47888999999999999886 56653
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1.9e-17 Score=173.52 Aligned_cols=225 Identities=20% Similarity=0.176 Sum_probs=118.4
Q ss_pred CCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEccccc
Q 037538 198 SSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENG 277 (461)
Q Consensus 198 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 277 (461)
+.++.|++.+|.+.. .+.. .++.++++.|.+.. +++..|.+. ..+..+..++.|+.|+|++|.
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~-----~l~~l~Ls~~~i~~----------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~ 235 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQA-----LLQHKKLSQYSIDE----------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQ 235 (727)
T ss_dssp ------------------------------------------------------------------CCCCCCEEECTTSC
T ss_pred CccceEEeeCCCCCc-chhh-----HhhcCccCcccccC----------cccccccee-cChhhhccCCCCcEEECCCCC
Confidence 457778887777764 2322 23444555544332 223334433 346678888999999999998
Q ss_pred ccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcC
Q 037538 278 LTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLM 357 (461)
Q Consensus 278 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 357 (461)
+. .+|..+..+++|++|+|++|.++. ++..+.++++|+.|+|++|.++ .+|..+..+. +|++|++++|.+
T Consensus 236 l~-~l~~~~~~l~~L~~L~Ls~N~l~~-------lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-~L~~L~L~~N~l 305 (727)
T 4b8c_D 236 IF-NISANIFKYDFLTRLYLNGNSLTE-------LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF-QLKYFYFFDNMV 305 (727)
T ss_dssp CS-CCCGGGGGCCSCSCCBCTTSCCSC-------CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT-TCSEEECCSSCC
T ss_pred CC-CCChhhcCCCCCCEEEeeCCcCcc-------cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC-CCCEEECCCCCC
Confidence 87 566667788999999999998873 4566788899999999999998 7888888876 899999999998
Q ss_pred cccCchhhhcCCCCCeeecccCcCccccchhhhcCCC-CCeeccccccCcccCChhhhcCccCCeeecccc--------c
Q 037538 358 HGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNK-LEGLELNANKFSGFMPSSLGNLTVLSRLLMEEN--------R 428 (461)
Q Consensus 358 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--------~ 428 (461)
+ .+|..+..+++|+.|+|++|.+++.+|..+..... +..+++++|.+++.+|..+ +.|+++.| .
T Consensus 306 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l------~~l~l~~n~~~~~~~~~ 378 (727)
T 4b8c_D 306 T-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER------RFIEINTDGEPQREYDS 378 (727)
T ss_dssp C-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------------------
T ss_pred C-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc------ceeEeecccccccccCC
Confidence 7 67888999999999999999999888887765432 2347899999998888654 45556655 3
Q ss_pred ccccCCccCCCCCCCCEEEccCCCCccc
Q 037538 429 FEGSIPPSLGNCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 429 l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 456 (461)
+.+..+..+..+..++...++.|-+.+.
T Consensus 379 l~~~~~~~~~~l~~~~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 379 LQQSTEHLATDLAKRTFTVLSYNTLCQH 406 (727)
T ss_dssp -----------------------CCCGG
T ss_pred ccccccchhhcccccceeeeeccccccc
Confidence 4444444556677777888888887643
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=6.7e-16 Score=134.89 Aligned_cols=131 Identities=21% Similarity=0.305 Sum_probs=108.9
Q ss_pred EEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCch-hccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCC
Q 037538 82 VLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPE-EIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAN 160 (461)
Q Consensus 82 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 160 (461)
.+++++++++ .+|..+. .++++|++++|.+++..+. .|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4455566664 5666554 3899999999999865554 4888999999999999999888889999999999999999
Q ss_pred cCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCC
Q 037538 161 DFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP 215 (461)
Q Consensus 161 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 215 (461)
++++..+..+.++++|++|++++|++++..|..+..+++|++|++++|.+.+..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9988888888899999999999999998888888889999999999998876543
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=2.9e-16 Score=131.27 Aligned_cols=128 Identities=17% Similarity=0.183 Sum_probs=105.8
Q ss_pred CCCCCEEecCCCCCc-ccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEE
Q 037538 101 LTNLTGINLFQNRFH-GQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEII 179 (461)
Q Consensus 101 l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 179 (461)
.+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888888888887 67888788888999999999888754 678888999999999998887788888888999999
Q ss_pred EccCCCCccc-CCccCCCCCCCCEEECccCCCcccCC---hhhhcCCCCcEEecC
Q 037538 180 RLGTSNLTGN-IPAWVGNFSSLQVLLLARNNLHGSIP---NELGQLSALGFFTLY 230 (461)
Q Consensus 180 ~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~ 230 (461)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999988853 34678888999999999999886655 478888888888775
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=4.4e-16 Score=133.00 Aligned_cols=135 Identities=18% Similarity=0.170 Sum_probs=102.0
Q ss_pred CCCCCCEEecCCCCCc-ccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcE
Q 037538 100 NLTNLTGINLFQNRFH-GQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEI 178 (461)
Q Consensus 100 ~l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 178 (461)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+.++++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3477888888888886 66777777888888888888887744 67778888888888888887767777777888888
Q ss_pred EEccCCCCccc-CCccCCCCCCCCEEECccCCCcccCC---hhhhcCCCCcEEecCCCCchh
Q 037538 179 IRLGTSNLTGN-IPAWVGNFSSLQVLLLARNNLHGSIP---NELGQLSALGFFTLYENFISD 236 (461)
Q Consensus 179 L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~l~~ 236 (461)
|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 88888888753 22567788888888888888875544 367777777777777766544
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=8.4e-16 Score=132.44 Aligned_cols=133 Identities=21% Similarity=0.262 Sum_probs=90.6
Q ss_pred CCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccc
Q 037538 322 LEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELN 401 (461)
Q Consensus 322 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~ 401 (461)
.+.+++++++++ .+|..+ ++++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 345666666655 344322 2367777777777776555556777777777777777775555556777777777777
Q ss_pred cccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCC
Q 037538 402 ANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 402 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
+|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 777776666667777777888887777775545556777777888888887776544
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=3.4e-15 Score=128.61 Aligned_cols=138 Identities=22% Similarity=0.275 Sum_probs=110.1
Q ss_pred CCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCC
Q 037538 63 VHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142 (461)
Q Consensus 63 ~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 142 (461)
...|.|.++.|.. +++. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 4 ~C~C~~~~l~~~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (177)
T 2o6r_A 4 RCSCSGTEIRCNS------------KGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP 68 (177)
T ss_dssp TCEEETTEEECCS------------SCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEeCCCEEEecC------------CCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC
Confidence 3457888777753 3343 344333 378999999999998666667889999999999999998666
Q ss_pred CcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCC
Q 037538 143 PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP 215 (461)
Q Consensus 143 p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 215 (461)
+..+..+++|++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 69 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 69 DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6678899999999999999987777778889999999999999986555556788999999999999886544
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.4e-16 Score=151.68 Aligned_cols=292 Identities=12% Similarity=0.071 Sum_probs=171.5
Q ss_pred CCCCCEEecCCCCCcccCchhccC-CCCCCEEeCCCCCCC--CCCCcCCCCCCCCCEEEccCCcCCCcCchhhcC-----
Q 037538 101 LTNLTGINLFQNRFHGQIPEEIGR-LQKLQDLNLTYNYLS--GKIPTNLSHCTELRSFEASANDFIGQIPDQLIS----- 172 (461)
Q Consensus 101 l~~L~~L~L~~n~~~~~~~~~l~~-l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~----- 172 (461)
+.+++.|.++++ +.+.....+.. +++|++|||++|++. ...+. .++.++.+.+..+.+ ...+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhccccccc
Confidence 567888888764 22111223333 778888888888776 11111 122234444444422 1234555
Q ss_pred ---CCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEc
Q 037538 173 ---LTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAG 249 (461)
Q Consensus 173 ---l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l 249 (461)
+++|+.+++.+ .++...+..|.++++|+++++.+|.+....+..|..+.++..+....+.....
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~------------ 163 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF------------ 163 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT------------
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc------------
Confidence 88888888887 67655566777888888888888877644445554444433333322110000
Q ss_pred cCccCccccChhhcCCCCCC-EEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEcc
Q 037538 250 GVNYFTGSIPVSLSNASNLQ-VLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLA 328 (461)
Q Consensus 250 ~~n~~~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 328 (461)
........+..+..|+ .+.+.... .++. .....-....++..+.+.
T Consensus 164 ----~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~--------------------------~~~~~~~~~~~~~~l~~~ 210 (329)
T 3sb4_A 164 ----KNRWEHFAFIEGEPLETTIQVGAMG---KLED--------------------------EIMKAGLQPRDINFLTIE 210 (329)
T ss_dssp ----STTTTTSCEEESCCCEEEEEECTTC---CHHH--------------------------HHHHTTCCGGGCSEEEEE
T ss_pred ----cccccccccccccccceeEEecCCC---cHHH--------------------------HHhhcccCccccceEEEe
Confidence 0000011122233333 22221110 0000 000111123445555555
Q ss_pred CCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCC-eeccccccCcc
Q 037538 329 QNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLE-GLELNANKFSG 407 (461)
Q Consensus 329 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~-~L~L~~n~l~~ 407 (461)
++-.. .....+....++|+.+++++|+++...+.+|.++++|+.+++++| +....+..|.++++|+ .+.+.+ .++.
T Consensus 211 ~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~ 287 (329)
T 3sb4_A 211 GKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA 287 (329)
T ss_dssp ECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE
T ss_pred eeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE
Confidence 44221 112222222347888888888888766678889999999999987 7656667788999999 999988 7776
Q ss_pred cCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEc
Q 037538 408 FMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNL 448 (461)
Q Consensus 408 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 448 (461)
.-+.+|.+|++|+.+++++|.++...+.+|.+|++|+.+..
T Consensus 288 I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 288 IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 66789999999999999999998776778999999998753
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=133.17 Aligned_cols=127 Identities=20% Similarity=0.295 Sum_probs=88.6
Q ss_pred CEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeecccc
Q 037538 323 EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNA 402 (461)
Q Consensus 323 ~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~ 402 (461)
+.++++++.++ .+|..+ ++++++|++++|.++ .+|..+..+++|+.|+|++|.+++..+..|.++++|+.|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45666666665 455432 236777777777776 4566677777777777777777766666677777777777777
Q ss_pred ccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 403 NKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 403 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7777666667777777777777777777555556777777777777777764
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=2.1e-16 Score=132.13 Aligned_cols=128 Identities=18% Similarity=0.166 Sum_probs=88.3
Q ss_pred CCCCEEEccCCcCc-cccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCee
Q 037538 320 TSLEVLGLAQNGFG-GEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGL 398 (461)
Q Consensus 320 ~~L~~L~L~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L 398 (461)
++++.|++++|.++ +.+|..+..++ +|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCT-TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcC-CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45666666666665 55555555554 677777777776654 456677777777777777776677777677777777
Q ss_pred ccccccCccc-CChhhhcCccCCeeecccccccccCC---ccCCCCCCCCEEEccC
Q 037538 399 ELNANKFSGF-MPSSLGNLTVLSRLLMEENRFEGSIP---PSLGNCKKLQVLNLSS 450 (461)
Q Consensus 399 ~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~ls~ 450 (461)
++++|++++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.||+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7777777753 33667777788888888887776544 4667777788777763
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=6.7e-16 Score=146.93 Aligned_cols=210 Identities=12% Similarity=0.114 Sum_probs=140.5
Q ss_pred CCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCC
Q 037538 241 LPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCT 320 (461)
Q Consensus 241 l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~ 320 (461)
+++|+.+.+.. .++..-+..|..|++|+++++.+|.+....+.+|..+.++..+....+..... ... -...++.++.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~-~~~-i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF-KNR-WEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT-STT-TTTSCEEESC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc-ccc-cccccccccc
Confidence 34444444444 44433345677888888888888888767777787777666666554211000 000 0112345566
Q ss_pred CCC-EEEccCCcCccccchHHHhc---cccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCC
Q 037538 321 SLE-VLGLAQNGFGGEMPISIANL---STHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLE 396 (461)
Q Consensus 321 ~L~-~L~L~~n~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~ 396 (461)
.|+ .+.+... +.++..+... ..++..+.+.++-...........+++|+.++|++|+++...+..|.++++|+
T Consensus 177 ~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 177 PLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred ccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 666 5555433 2344433321 23677777766533222222223489999999999999966667899999999
Q ss_pred eeccccccCcccCChhhhcCccCC-eeecccccccccCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 397 GLELNANKFSGFMPSSLGNLTVLS-RLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 397 ~L~L~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
.+++.+| ++..-+.+|.+|++|+ .+++.+ .++...+.+|.+|++|+.+++++|.+. .|++
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~ 314 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGD 314 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECT
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccch
Confidence 9999998 7766778999999999 999998 777666789999999999999999886 4443
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=1e-14 Score=127.40 Aligned_cols=126 Identities=23% Similarity=0.308 Sum_probs=99.0
Q ss_pred EEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCc
Q 037538 82 VLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAND 161 (461)
Q Consensus 82 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 161 (461)
.+++++++++ .+|..+. +++++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3455566665 5565443 68889999999887 677888888899999999998887667778888888888888888
Q ss_pred CCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCc
Q 037538 162 FIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLH 211 (461)
Q Consensus 162 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 211 (461)
+++..+..|.++++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88777777888888888888888888555556777888888888888775
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=6.9e-15 Score=126.56 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=53.1
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCCh--hhhcCccCCeee
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPS--SLGNLTVLSRLL 423 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~ 423 (461)
+|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 455555555555432 23445555555555555555332233355555555555555554 3333 455555555555
Q ss_pred cccccccccCCcc----CCCCCCCCEEEccCCCC
Q 037538 424 MEENRFEGSIPPS----LGNCKKLQVLNLSSNNL 453 (461)
Q Consensus 424 l~~n~l~~~~p~~----l~~l~~L~~L~ls~N~l 453 (461)
+++|+++ .+|.. +..+++|+.||+++|.+
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 5555555 33332 45555555555555543
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.9e-14 Score=123.72 Aligned_cols=134 Identities=12% Similarity=0.147 Sum_probs=103.6
Q ss_pred cccCCCCCCEEecCCCCCcccCchhccCCC-CCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCC
Q 037538 97 SIGNLTNLTGINLFQNRFHGQIPEEIGRLQ-KLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTK 175 (461)
Q Consensus 97 ~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 175 (461)
.+.++.+|+.|++++|.++ .++. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3566788888888888887 4554 44444 889999998888853 57888889999999999888654455588889
Q ss_pred CcEEEccCCCCcccCCc--cCCCCCCCCEEECccCCCcccCCh----hhhcCCCCcEEecCCCCchh
Q 037538 176 LEIIRLGTSNLTGNIPA--WVGNFSSLQVLLLARNNLHGSIPN----ELGQLSALGFFTLYENFISD 236 (461)
Q Consensus 176 L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l~~ 236 (461)
|++|++++|.+. .+|. .+..+++|++|++++|.+. .+|. .+..+++|+.|+++.|...+
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999886 4555 6778889999999999887 4555 37888888888888877644
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=2.9e-16 Score=137.98 Aligned_cols=161 Identities=21% Similarity=0.292 Sum_probs=84.7
Q ss_pred hcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHH
Q 037538 262 LSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIA 341 (461)
Q Consensus 262 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~ 341 (461)
+.....++.++++++.+++..|. ++ .++..+..+++|++|++++|.+++ +| .+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~-----------------l~-------~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~ 67 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPP-----------------IE-------KMDATLSTLKACKHLALSTNNIEK-IS-SLS 67 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTT-----------------CC-------CCHHHHHHTTTCSEEECSEEEESC-CC-CHH
T ss_pred HHhcccccCcchheeEeccccCc-----------------Hh-------hhhHHHhcCCCCCEEECCCCCCcc-cc-ccc
Confidence 44456667777777777665554 00 122234444555555555555543 33 444
Q ss_pred hccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCC-hhhhcCccCC
Q 037538 342 NLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMP-SSLGNLTVLS 420 (461)
Q Consensus 342 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~ 420 (461)
.++ +|++|++++|.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|+
T Consensus 68 ~l~-~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 68 GME-NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp HHT-TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred cCC-CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence 443 5555555555555 344444555556666666665553 33 35555566666666666553211 3455566666
Q ss_pred eeecccccccccCCcc----------CCCCCCCCEEEccCCCCc
Q 037538 421 RLLMEENRFEGSIPPS----------LGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 421 ~L~l~~n~l~~~~p~~----------l~~l~~L~~L~ls~N~l~ 454 (461)
.|++++|++++.+|.. +..+++|+.|| +|+++
T Consensus 144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 6666666665544432 45566666665 44443
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.50 E-value=2.9e-12 Score=124.68 Aligned_cols=268 Identities=10% Similarity=0.088 Sum_probs=133.3
Q ss_pred CCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEEC
Q 037538 126 QKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLL 205 (461)
Q Consensus 126 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (461)
..++.+.+.++ ++..-...|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .+...-...|.++++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 34444444332 221223334443 4555555433 332223334442 455555543 333333344555555555555
Q ss_pred ccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCcc
Q 037538 206 ARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN 285 (461)
Q Consensus 206 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 285 (461)
..|.+.......|. ..+|+.+.+..+ ++..-...|..+++|+.+++.++ ++.....+
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~---------------------l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~a 244 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT---------------------LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEA 244 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT---------------------CCEECTTTTTTCTTCCCEECCTT-CCEECTTT
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc---------------------hheehhhHhhCCCCCCEEecCCC-ccCccccc
Confidence 55555422222222 233333333321 11112234555666666666553 33333444
Q ss_pred CCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhh
Q 037538 286 FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI 365 (461)
Q Consensus 286 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 365 (461)
|.+ .+|+.+.+.. .+... -..+|.+|++|+.+++.++.+.. +......+.+|
T Consensus 245 F~~-~~L~~i~lp~-~i~~I------~~~aF~~c~~L~~l~l~~~~~~~--------------------~~~~~I~~~aF 296 (401)
T 4fdw_A 245 FRE-SGITTVKLPN-GVTNI------ASRAFYYCPELAEVTTYGSTFND--------------------DPEAMIHPYCL 296 (401)
T ss_dssp TTT-CCCSEEEEET-TCCEE------CTTTTTTCTTCCEEEEESSCCCC--------------------CTTCEECTTTT
T ss_pred ccc-CCccEEEeCC-CccEE------ChhHhhCCCCCCEEEeCCccccC--------------------CcccEECHHHh
Confidence 544 5666666632 23221 12345566666666665554320 01112334456
Q ss_pred hcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCC-CCC
Q 037538 366 ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCK-KLQ 444 (461)
Q Consensus 366 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~ 444 (461)
.+|++|+.+++.+ .+...-...|.++.+|+.+.+..+ ++..-..+|.++ +|+.+++++|.+....+..|..++ .++
T Consensus 297 ~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~ 373 (401)
T 4fdw_A 297 EGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDIT 373 (401)
T ss_dssp TTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCC
T ss_pred hCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCcc
Confidence 6677777777763 355444556667777777777544 554555667777 777777777776654455666663 566
Q ss_pred EEEccCCC
Q 037538 445 VLNLSSNN 452 (461)
Q Consensus 445 ~L~ls~N~ 452 (461)
.+.+..+.
T Consensus 374 ~l~vp~~~ 381 (401)
T 4fdw_A 374 VIRVPAES 381 (401)
T ss_dssp EEEECGGG
T ss_pred EEEeCHHH
Confidence 77666554
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=5.8e-16 Score=136.05 Aligned_cols=152 Identities=23% Similarity=0.289 Sum_probs=88.6
Q ss_pred CCCCcEEEccCccCccccCh------hhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhh
Q 037538 241 LPNLKIFAGGVNYFTGSIPV------SLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLK 314 (461)
Q Consensus 241 l~~L~~L~l~~n~~~~~~~~------~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 314 (461)
...++.++++.+.+.+.+|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~----------- 83 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK----------- 83 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-----------
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-----------
Confidence 45666677777777776665 67777777888887777765 34 5555556666666655554
Q ss_pred hhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccc-hhhhcCC
Q 037538 315 FLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVP-EVIGRLN 393 (461)
Q Consensus 315 ~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~~~ 393 (461)
.+|..+..++ +|++|++++|.+++ +| .+..+++|+.|++++|.+++..+ ..+..++
T Consensus 84 --------------------~l~~~~~~~~-~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~ 140 (198)
T 1ds9_A 84 --------------------KIENLDAVAD-TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALD 140 (198)
T ss_dssp --------------------SCSSHHHHHH-HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTT
T ss_pred --------------------cccchhhcCC-cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCC
Confidence 2333333322 55555555555553 23 35555566666666666653211 3455566
Q ss_pred CCCeeccccccCcccCCh----------hhhcCccCCeeeccccccc
Q 037538 394 KLEGLELNANKFSGFMPS----------SLGNLTVLSRLLMEENRFE 430 (461)
Q Consensus 394 ~L~~L~L~~n~l~~~~~~----------~~~~l~~L~~L~l~~n~l~ 430 (461)
+|++|++++|++++..|. .+..+++|+.|| +|.++
T Consensus 141 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 141 KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp TCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 666666666666544333 256677777665 55554
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.48 E-value=4.6e-12 Score=123.43 Aligned_cols=327 Identities=11% Similarity=0.013 Sum_probs=187.5
Q ss_pred CccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCC
Q 037538 95 PASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLT 174 (461)
Q Consensus 95 ~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 174 (461)
..+|.++++|+.+.+.. .++..-..+|..|++|+.+++..+ ++..-...|.++.+|+.+.+..+ +......+|.++.
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 45677888888888864 355444567888888888888654 44333456777777777666433 2223334455554
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCc---hhhccCCCCCcEEEccC
Q 037538 175 KLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFI---SDVGLTLPNLKIFAGGV 251 (461)
Q Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l---~~~~~~l~~L~~L~l~~ 251 (461)
.++......... .....|.++++|+.+.+.++... .....+..+.+|+.+.+..+-- ......+..|+.+.+..
T Consensus 141 ~~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 141 FKEITIPEGVTV--IGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp CSEEECCTTCCE--ECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccccCccccc--cchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCCceEeCchhhccccccceeecCC
Confidence 333333222221 22345667777777777654322 3334566666777766655411 11122344455444443
Q ss_pred ccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCc
Q 037538 252 NYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNG 331 (461)
Q Consensus 252 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~ 331 (461)
+... +........+|+.+.+.+. ++......+..+..++.+.+..+...- ....+..++.++.+......
T Consensus 218 ~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i-------~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 218 SLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRI-------GGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp TCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEE-------CSCTTTTCTTCCEEEECSSE
T ss_pred CceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCccee-------eccccccccccceeccCcee
Confidence 3221 1222334466777776543 232334456677777777776653321 12345566777777665543
Q ss_pred CccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCCh
Q 037538 332 FGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPS 411 (461)
Q Consensus 332 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~ 411 (461)
+.. ..+... .+|+.+.+..+ +......+|.++.+|+.+++.++ ++..-...|.+|.+|+.+.+..+ ++..-..
T Consensus 288 i~~---~~F~~~-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 288 VPE---KTFYGC-SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp ECT---TTTTTC-TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred ecc---cccccc-ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 221 112222 36777777654 44444556777888888888644 55344567778888888888766 5545566
Q ss_pred hhhcCccCCeeecccccccccCCccCCCCCCCCEE
Q 037538 412 SLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVL 446 (461)
Q Consensus 412 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 446 (461)
+|.+|++|+.+++..+ ++ .+..+|.+|++|+.+
T Consensus 361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 7888888888888654 22 334567777777664
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.5e-13 Score=117.24 Aligned_cols=106 Identities=22% Similarity=0.319 Sum_probs=57.5
Q ss_pred CCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccc
Q 037538 322 LEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELN 401 (461)
Q Consensus 322 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~ 401 (461)
.+.+++++|+++ .+|..+ ++++++|++++|.+++..|..+..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 455666666655 344332 1255556666665555555555555555555555555554444444555555555555
Q ss_pred cccCcccCChhhhcCccCCeeecccccccc
Q 037538 402 ANKFSGFMPSSLGNLTVLSRLLMEENRFEG 431 (461)
Q Consensus 402 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 431 (461)
+|++++..+..|..+++|+.|++++|+++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 555554444445555555555555555543
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.45 E-value=1.8e-11 Score=119.30 Aligned_cols=321 Identities=14% Similarity=0.068 Sum_probs=221.3
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
..++.+.+..+ ++..-..+|.++++|+.+++.++ ++..-..+|..+.+|+.+.+..+ +...-...|.++..++....
T Consensus 71 ~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 46888888743 55445678999999999999765 54344567889999998887654 33234455666654444333
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCc--h
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFI--S 235 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l--~ 235 (461)
... ......+|.++++|+.+.+..+. .......+.++.+|+.+.+..+ +.......+..+..|+.+.+..+.. .
T Consensus 148 ~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~ 223 (394)
T 4fs7_A 148 EGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLG 223 (394)
T ss_dssp TTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEEC
T ss_pred ccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEee
Confidence 322 22334568889999999987654 3244556778889999988766 4434456677888888887766543 2
Q ss_pred hhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhh
Q 037538 236 DVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKF 315 (461)
Q Consensus 236 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 315 (461)
+.......|+.+.+.... +..-...+..+..++.+.+..+... .....|..+..++.+......+.. ..
T Consensus 224 ~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~---------~~ 292 (394)
T 4fs7_A 224 DFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE---------KT 292 (394)
T ss_dssp TTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT---------TT
T ss_pred hhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc---------cc
Confidence 333445677877775432 2223346778899999999877443 455678889999998887654432 34
Q ss_pred hcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCC
Q 037538 316 LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKL 395 (461)
Q Consensus 316 l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L 395 (461)
+..+.+|+.+.+..+ ++..-...+.... +|+.+++..+ ++..-..+|.+|.+|+.+++..+ ++..-...|.+|.+|
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCT-SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCT-TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred ccccccccccccccc-cceechhhhcCCC-CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 677899999998764 4422233444444 8999999754 66555678899999999999876 664556789999999
Q ss_pred CeeccccccCcccCChhhhcCccCCee
Q 037538 396 EGLELNANKFSGFMPSSLGNLTVLSRL 422 (461)
Q Consensus 396 ~~L~L~~n~l~~~~~~~~~~l~~L~~L 422 (461)
+.+.+..+ +. .+..+|.+|++|+.+
T Consensus 369 ~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 369 KKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CEEEECCC-CE-EhhheecCCCCCcEE
Confidence 99999866 33 345788889888765
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=4.6e-13 Score=114.70 Aligned_cols=104 Identities=23% Similarity=0.349 Sum_probs=65.9
Q ss_pred CEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeecccc
Q 037538 323 EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNA 402 (461)
Q Consensus 323 ~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~ 402 (461)
+.+++++|+++ .+|..+. ++|++|++++|.+++..|..+..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56777777665 5554332 3667777777776666666666666677777777766654444456666666666666
Q ss_pred ccCcccCChhhhcCccCCeeeccccccc
Q 037538 403 NKFSGFMPSSLGNLTVLSRLLMEENRFE 430 (461)
Q Consensus 403 n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 430 (461)
|++++..+..|..+++|+.|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6666444444666666666666666665
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.43 E-value=1.3e-11 Score=120.10 Aligned_cols=263 Identities=10% Similarity=0.060 Sum_probs=174.3
Q ss_pred CCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEE
Q 037538 101 LTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIR 180 (461)
Q Consensus 101 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 180 (461)
+..++.+.+.+ .++..-..+|..+ +|+.+.+..+ ++..-...|.++ +|+.+.+.. .+...-..+|.++++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 46667777654 3443344556664 6888887665 543444456663 678887764 45544556677788888888
Q ss_pred ccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhh---ccCCCCCcEEEccCccCccc
Q 037538 181 LGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV---GLTLPNLKIFAGGVNYFTGS 257 (461)
Q Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~---~~~l~~L~~L~l~~n~~~~~ 257 (461)
+.+|+++......|. ..+|+.+.+..+ +.......|..+++|+.+.+..+ +..+ ...-.+|+.+.+. +.++..
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVTNI 262 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCCEE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCccEE
Confidence 887777743333444 577888887744 55455566777788888887664 2222 1222678888874 445544
Q ss_pred cChhhcCCCCCCEEEccccccc-----ccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcC
Q 037538 258 IPVSLSNASNLQVLDFAENGLT-----GTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGF 332 (461)
Q Consensus 258 ~~~~l~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~ 332 (461)
-...|..|++|+.+++.+|.+. ...+..|.++++|+.+.+.+ .+...+ ..+|.+|++|+.+++..+ +
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~------~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG------QGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC------TTTTTTCCSCCEEEECTT-C
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh------hhhhcCCCCccEEEECcc-c
Confidence 4667888999999999887664 34566888999999999984 355422 346788899999999654 4
Q ss_pred ccccchHHHhccccccEEEccCCcCcccCchhhhcCC-CCCeeecccCcCc
Q 037538 333 GGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLV-NLSLLGLEGNNLS 382 (461)
Q Consensus 333 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~ 382 (461)
+..-...+... +|+.+++.+|......+..|.+++ +++.|.+..+.+.
T Consensus 335 ~~I~~~aF~~~--~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 335 TQINFSAFNNT--GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CEECTTSSSSS--CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cEEcHHhCCCC--CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 42223334443 899999999987766666677774 7888888877654
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=1.2e-12 Score=111.60 Aligned_cols=85 Identities=21% Similarity=0.182 Sum_probs=39.4
Q ss_pred CCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECc
Q 037538 127 KLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLA 206 (461)
Q Consensus 127 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (461)
+|++|++++|++++..|..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+.++++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 34444444444443334444444444444444444443333334444555555555555443333344555555555555
Q ss_pred cCCCc
Q 037538 207 RNNLH 211 (461)
Q Consensus 207 ~n~~~ 211 (461)
+|.+.
T Consensus 111 ~N~~~ 115 (170)
T 3g39_A 111 NNPWD 115 (170)
T ss_dssp SSCBC
T ss_pred CCCCC
Confidence 55554
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=3.4e-14 Score=136.98 Aligned_cols=186 Identities=17% Similarity=0.185 Sum_probs=131.4
Q ss_pred CCCCCEEEcccccccccCCcc----CC-CCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchH
Q 037538 265 ASNLQVLDFAENGLTGTIPEN----FG-SLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPIS 339 (461)
Q Consensus 265 ~~~L~~L~l~~n~l~~~~~~~----~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~ 339 (461)
.+.|++|++++|.++...... +. ..++|++|+|++|.++... .......+++|+.|++++|.+++.....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~-----~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG-----LRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH-----HHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH-----HHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 368999999999987653333 22 3379999999999987621 2222334568999999999998655444
Q ss_pred HHh----ccccccEEEccCCcCccc----CchhhhcCCCCCeeecccCcCccc----cchhhhcCCCCCeeccccccCcc
Q 037538 340 IAN----LSTHLRILTMGYNLMHGN----IPVGIENLVNLSLLGLEGNNLSGS----VPEVIGRLNKLEGLELNANKFSG 407 (461)
Q Consensus 340 ~~~----~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~ 407 (461)
+.. ..++|++|++++|.++.. ++..+..+++|++|+|++|.+.+. ++..+...++|+.|+|++|.+++
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 432 124899999999998752 444557789999999999999753 35566778899999999999985
Q ss_pred c----CChhhhcCccCCeeecccccccccCCccCCCC---C--CCCEEE--ccCCCCcc
Q 037538 408 F----MPSSLGNLTVLSRLLMEENRFEGSIPPSLGNC---K--KLQVLN--LSSNNLNG 455 (461)
Q Consensus 408 ~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l---~--~L~~L~--ls~N~l~~ 455 (461)
. ++..+..+++|+.|+|++|.|++.....+..+ . .++.+. +.+|.++.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 3 44556678999999999999986544444322 2 277777 77777654
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=2.3e-12 Score=110.34 Aligned_cols=85 Identities=21% Similarity=0.207 Sum_probs=39.4
Q ss_pred CCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECc
Q 037538 127 KLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLA 206 (461)
Q Consensus 127 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (461)
+|++|++++|++++..|..|.++++|++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 44444444444443334444444444444444444443323333445555555555555543323335555555555555
Q ss_pred cCCCc
Q 037538 207 RNNLH 211 (461)
Q Consensus 207 ~n~~~ 211 (461)
+|.+.
T Consensus 114 ~N~~~ 118 (174)
T 2r9u_A 114 NNPWD 118 (174)
T ss_dssp SSCBC
T ss_pred CCCcc
Confidence 55554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=1.6e-14 Score=139.22 Aligned_cols=188 Identities=15% Similarity=0.127 Sum_probs=129.9
Q ss_pred CCCCcEEEccCccCccccChhhcC-----CCCCCEEEcccccccccCCccC-CCCCCCCEEEcccCcCcccCCCCchhhh
Q 037538 241 LPNLKIFAGGVNYFTGSIPVSLSN-----ASNLQVLDFAENGLTGTIPENF-GSLKDLVRLNFDQNELGSREIGDLNFLK 314 (461)
Q Consensus 241 l~~L~~L~l~~n~~~~~~~~~l~~-----~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 314 (461)
.+.++.+++++|.++......+.. .++|++|++++|.++......+ ..+++|+.|+|++|.+++.... .+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~--~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK--DLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH--HHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH--HHHH
Confidence 467999999999987654443332 3689999999998875533333 3456899999999998763221 2223
Q ss_pred hh-cCCCCCCEEEccCCcCccc----cchHHHhccccccEEEccCCcCccc----CchhhhcCCCCCeeecccCcCccc-
Q 037538 315 FL-ANCTSLEVLGLAQNGFGGE----MPISIANLSTHLRILTMGYNLMHGN----IPVGIENLVNLSLLGLEGNNLSGS- 384 (461)
Q Consensus 315 ~l-~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~- 384 (461)
.+ ...++|++|++++|.++.. ++..+...+ +|++|++++|.+++. ++..+...++|+.|+|++|.+++.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS-SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCC-CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 33 3578899999999998753 333334444 899999999998753 345667788999999999999853
Q ss_pred ---cchhhhcCCCCCeeccccccCcccCChhhhcCcc-----CCeee--cccccccc
Q 037538 385 ---VPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTV-----LSRLL--MEENRFEG 431 (461)
Q Consensus 385 ---~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-----L~~L~--l~~n~l~~ 431 (461)
++..+...++|++|+|++|.+++.....+..+.. |+.+. +.+|.+..
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 3445556789999999999998665555554321 66666 66666653
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=2.4e-11 Score=116.17 Aligned_cols=102 Identities=23% Similarity=0.201 Sum_probs=52.4
Q ss_pred EEccCC-cCcccCchhhhcCCCCCeeeccc-CcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccc
Q 037538 350 LTMGYN-LMHGNIPVGIENLVNLSLLGLEG-NNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEEN 427 (461)
Q Consensus 350 L~l~~n-~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 427 (461)
++++++ .+++ +|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 4442 444 55555555555553 5555444445555555555555555555555555555555555555555
Q ss_pred cccccCCccCCCCCCCCEEEccCCCCc
Q 037538 428 RFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 428 ~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
+|++..+..+..++ |+.|++++|++.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55533333333333 555555555553
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.20 E-value=2.4e-09 Score=104.17 Aligned_cols=318 Identities=10% Similarity=0.100 Sum_probs=164.4
Q ss_pred ccccCCC-CCCEEecCCCCCcccCchhccCCCCCCEEeCCCCC---CCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhc
Q 037538 96 ASIGNLT-NLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNY---LSGKIPTNLSHCTELRSFEASANDFIGQIPDQLI 171 (461)
Q Consensus 96 ~~l~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 171 (461)
.+|.+++ .|+.+.+..+ ++..-..+|..|++|+.+.+..+. ++..-...|.++.+|+.+.+..+ ++.....++.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 3455553 4777777543 443445567777777777776542 33223345666666666655433 3323334566
Q ss_pred CCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccC
Q 037538 172 SLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGV 251 (461)
Q Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~ 251 (461)
++.+|+.+.+..+. .......+..+.+|+.+.+..+ +.......+. ...|+.+.+..+..
T Consensus 135 ~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~----------------- 194 (394)
T 4gt6_A 135 HCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT----------------- 194 (394)
T ss_dssp TCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-----------------
T ss_pred hhccccccccccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-----------------
Confidence 66677777665432 2233344556666666666543 2211122222 23444444433211
Q ss_pred ccCccccChhhcCCCCCCEEEcccccccccCC-------------ccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcC
Q 037538 252 NYFTGSIPVSLSNASNLQVLDFAENGLTGTIP-------------ENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLAN 318 (461)
Q Consensus 252 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 318 (461)
......+..+.+++......+......- ..+.....+..+.+... +.. .-..+|.+
T Consensus 195 ----~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~------i~~~aF~~ 263 (394)
T 4gt6_A 195 ----RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VAR------IETHAFDS 263 (394)
T ss_dssp ----EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEE------ECTTTTTT
T ss_pred ----ccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceE------cccceeee
Confidence 1111233444445444443322211000 00111222333333211 111 11234667
Q ss_pred CCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCee
Q 037538 319 CTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGL 398 (461)
Q Consensus 319 ~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L 398 (461)
+..|+.+.+..+... .....+.... .|+.+.+. +.++.....+|.+|.+|+.+++.++ ++..-...|.+|.+|+.+
T Consensus 264 c~~L~~i~lp~~~~~-I~~~aF~~c~-~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 264 CAYLASVKMPDSVVS-IGTGAFMNCP-ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp CSSCCEEECCTTCCE-ECTTTTTTCT-TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccEEecccccce-ecCccccccc-ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 777777777654322 1122233333 77777775 3444445567888899999999764 554445678889999999
Q ss_pred ccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 399 ELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 399 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
.+..+ ++..-..+|.+|++|+.+++.++.... ..+..+..|+.+.+..|.+.
T Consensus 340 ~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 340 AIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp EECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred EECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 99754 654556789999999999999876542 46777888999988877653
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=1.1e-10 Score=111.49 Aligned_cols=107 Identities=18% Similarity=0.213 Sum_probs=78.2
Q ss_pred cceeeEEecCCCCcEEEEEcCCC-CcccccCccccCCCCCCEEecCC-CCCcccCchhccCCCCCCEEeCCCCCCCCCCC
Q 037538 66 CNWVGVTCSPSNGRVTVLKLESK-QLVGSIPASIGNLTNLTGINLFQ-NRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIP 143 (461)
Q Consensus 66 c~w~gv~c~~~~~~v~~L~l~~~-~l~~~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 143 (461)
|.|..+.|. ++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|++++..|
T Consensus 8 C~~~~v~~~------------~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 8 HGSSGLRCT------------RDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp SSSSCEECC------------SSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred ccCCEEEcC------------CCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH
Confidence 777666664 33 454 4676 88888888888885 88887666778888888888888888887777
Q ss_pred cCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCc
Q 037538 144 TNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLT 187 (461)
Q Consensus 144 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 187 (461)
..|.++++|++|+|++|++++..+..+..++ |++|++.+|.+.
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7778888888888888887754444444444 777777777665
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.12 E-value=8.8e-09 Score=100.13 Aligned_cols=321 Identities=12% Similarity=0.110 Sum_probs=185.5
Q ss_pred EEEEEcCCCCcccccCccccCCCCCCEEecCCCC---CcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEE
Q 037538 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNR---FHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFE 156 (461)
Q Consensus 80 v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~---~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 156 (461)
++.+.+... ++..-..+|.++++|+.+.+..+. ++..-..+|..+.+|+.+.+..+ ++..-...+..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 555555542 443445678899999999998763 54344567889999999888665 4434456788999999999
Q ss_pred ccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchh
Q 037538 157 ASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD 236 (461)
Q Consensus 157 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 236 (461)
+..+ ........+..+.+|+.+.+..+ +.......+. ..+|+.+.+..+-.. .....+..+..++......+....
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceeccccccccc
Confidence 9654 33344557888999999999765 3323333443 467898888765433 334566677777776665443322
Q ss_pred hccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhh
Q 037538 237 VGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316 (461)
Q Consensus 237 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 316 (461)
....+ ...+...............+..+.+.+ .+......+|..+..|+.+.+..+... .-..++
T Consensus 220 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-------I~~~aF 284 (394)
T 4gt6_A 220 IDNVL-------YEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-------IGTGAF 284 (394)
T ss_dssp SSSCE-------EEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-------ECTTTT
T ss_pred cccee-------ecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-------ecCccc
Confidence 11100 000000000000011123334444432 223233445667777777776554322 112345
Q ss_pred cCCCCCCEEEccCCcCccccch-HHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCC
Q 037538 317 ANCTSLEVLGLAQNGFGGEMPI-SIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKL 395 (461)
Q Consensus 317 ~~~~~L~~L~L~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L 395 (461)
.+++.|+.+.+.. .++ .++. .+.... +|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++..-...|.+|.+|
T Consensus 285 ~~c~~L~~i~l~~-~i~-~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 285 MNCPALQDIEFSS-RIT-ELPESVFAGCI-SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTCTTCCEEECCT-TCC-EECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred ccccccccccCCC-ccc-ccCceeecCCC-CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 6677777777753 333 2333 233333 7777777654 44444567888899999998654 554455678889999
Q ss_pred CeeccccccCcccCChhhhcCccCCeeecccccc
Q 037538 396 EGLELNANKFSGFMPSSLGNLTVLSRLLMEENRF 429 (461)
Q Consensus 396 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 429 (461)
+.+++.++.... .++..+..|+.+.+..+.+
T Consensus 360 ~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 360 NNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 999998876532 4667778888887776544
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=1.7e-09 Score=103.35 Aligned_cols=190 Identities=12% Similarity=0.072 Sum_probs=99.4
Q ss_pred hhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEE
Q 037538 217 ELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLN 296 (461)
Q Consensus 217 ~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 296 (461)
...++++|+.|.+......... ++... .+.+...+..+++|++|++++|.-. .++. + .+++|++|+
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~----------is~~~-~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~ 199 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQE----------ISWIE-QVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLE 199 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCC----------GGGCB-CCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEE
T ss_pred hhhhcchhhheeecCcchhhcc----------ccccc-ccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEE
Confidence 3556778888877654221100 00000 1123455667788888888776311 1222 3 367888888
Q ss_pred cccCcCcccCCCCchhhhhhc--CCCCCCEEEccC--CcCccc-----cchHHH-hccccccEEEccCCcCcccCchhhh
Q 037538 297 FDQNELGSREIGDLNFLKFLA--NCTSLEVLGLAQ--NGFGGE-----MPISIA-NLSTHLRILTMGYNLMHGNIPVGIE 366 (461)
Q Consensus 297 L~~n~l~~~~~~~~~~~~~l~--~~~~L~~L~L~~--n~~~~~-----~~~~~~-~~~~~L~~L~l~~n~l~~~~p~~~~ 366 (461)
+..+.+.. .....+. .+|+|+.|+|+. +...+. +...+. ...++|++|++.+|.+.+..+..+.
T Consensus 200 L~~~~l~~------~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la 273 (362)
T 2ra8_A 200 IISGGLPD------SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL 273 (362)
T ss_dssp EECSBCCH------HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH
T ss_pred EecCCCCh------HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH
Confidence 88777654 3333333 678888888753 211111 001111 1123667777766666543333332
Q ss_pred ---cCCCCCeeecccCcCcccc----chhhhcCCCCCeeccccccCcccCChhhhc-CccCCeeeccccc
Q 037538 367 ---NLVNLSLLGLEGNNLSGSV----PEVIGRLNKLEGLELNANKFSGFMPSSLGN-LTVLSRLLMEENR 428 (461)
Q Consensus 367 ---~l~~L~~L~Ls~n~l~~~~----~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~ 428 (461)
.+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.+++.....+.. + ...+++++++
T Consensus 274 ~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 3566777777776666532 223344566777777777666443333432 2 2455666555
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=2.1e-09 Score=102.65 Aligned_cols=213 Identities=15% Similarity=0.212 Sum_probs=117.7
Q ss_pred CCCcEEEccCCCCcc-cC-------CccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCc
Q 037538 174 TKLEIIRLGTSNLTG-NI-------PAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLK 245 (461)
Q Consensus 174 ~~L~~L~l~~n~l~~-~~-------~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~ 245 (461)
..++.|.+....+.+ .. ..+..++++|+.|.+........- +. .+....+..+...+|+|+
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~---is--------~~~~~~L~~ll~~~P~L~ 175 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQE---IS--------WIEQVDLSPVLDAMPLLN 175 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCC---GG--------GCBCCBCHHHHHTCTTCC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcc---cc--------cccccCHHHHHhcCCCCc
Confidence 467788888765442 11 223446789999998765331100 00 000112223333345555
Q ss_pred EEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCC--CCCCCCEEEccc--CcCccc-CCCCchhhhhh--cC
Q 037538 246 IFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFG--SLKDLVRLNFDQ--NELGSR-EIGDLNFLKFL--AN 318 (461)
Q Consensus 246 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~-~~~~~~~~~~l--~~ 318 (461)
.|.++++.-. .++. +. .++|++|++..+.+.......+. .+|+|+.|+|+. +...+. ... .+...+ ..
T Consensus 176 ~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~--~l~~~l~~~~ 250 (362)
T 2ra8_A 176 NLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN--VFRPLFSKDR 250 (362)
T ss_dssp EEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG--GTGGGSCTTT
T ss_pred EEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH--HHHHHHhcCC
Confidence 5555544211 1222 22 56777887777766544333332 577788877753 111111 000 111122 34
Q ss_pred CCCCCEEEccCCcCccccchHHHh--ccccccEEEccCCcCccc----CchhhhcCCCCCeeecccCcCccccchhhhc-
Q 037538 319 CTSLEVLGLAQNGFGGEMPISIAN--LSTHLRILTMGYNLMHGN----IPVGIENLVNLSLLGLEGNNLSGSVPEVIGR- 391 (461)
Q Consensus 319 ~~~L~~L~L~~n~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~- 391 (461)
+|+|+.|++.+|.+++..+..+.. ..++|++|+++.|.+.+. ++..+..+++|+.|++++|.++......+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 788888888888877555444443 224888999988888753 3334456788999999999887654444443
Q ss_pred CCCCCeecccccc
Q 037538 392 LNKLEGLELNANK 404 (461)
Q Consensus 392 ~~~L~~L~L~~n~ 404 (461)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3557777776
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.88 E-value=3.8e-07 Score=88.04 Aligned_cols=314 Identities=10% Similarity=0.036 Sum_probs=132.6
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcE
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEI 178 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 178 (461)
....+|+.+.+.. .++..-..+|..|.+|+.+++..+ ++..-..+|.++ +|+.+.+..+ +......+|.. .+|+.
T Consensus 43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~ 117 (379)
T 4h09_A 43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDD 117 (379)
T ss_dssp GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSE
T ss_pred ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCccc
Confidence 3345566666643 233233455667777777777543 432333455554 4555555432 22111223333 36666
Q ss_pred EEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCcccc
Q 037538 179 IRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSI 258 (461)
Q Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~ 258 (461)
+.+..+- .......+.+. +++.+.+..+ +.......+..+..++...+..+......... ... + .....
T Consensus 118 i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~-----~~~--~-~~~~~ 186 (379)
T 4h09_A 118 FEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENY-----VLY--N-KNKTI 186 (379)
T ss_dssp EECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETT-----EEE--E-TTSSE
T ss_pred ccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccc-----eec--c-cccce
Confidence 6665432 21222223332 4444443332 22122334445555555554433221100000 000 0 00001
Q ss_pred ChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccch
Q 037538 259 PVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPI 338 (461)
Q Consensus 259 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~ 338 (461)
...+..+..+..+.+.... .......+..+.+++.+.+..+ +.. ....++.++..|+.+.+..+ ++..-..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~------i~~~~f~~~~~L~~i~lp~~-v~~I~~~ 257 (379)
T 4h09_A 187 LESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTT------LGDGAFYGMKALDEIAIPKN-VTSIGSF 257 (379)
T ss_dssp EEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCE------ECTTTTTTCSSCCEEEECTT-CCEECTT
T ss_pred eccccccccccccccccce-eEEeecccccccccceeeeccc-eeE------EccccccCCccceEEEcCCC-ccEeCcc
Confidence 1112223333333333221 1122233444445555554332 111 11123344455555555433 2211111
Q ss_pred HHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCcc
Q 037538 339 SIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTV 418 (461)
Q Consensus 339 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 418 (461)
.+.... +|+.+.+..+ +.......|.++++|+.+.+.++.++..-...|.++.+|+.+.+..+ ++..-..+|.+|++
T Consensus 258 aF~~~~-~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 258 LLQNCT-ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTTCT-TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ccceee-hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 222222 4555555432 22233345556666666666666555444455666666666666543 44333456666666
Q ss_pred CCeeecccccccccCCccCCCCC
Q 037538 419 LSRLLMEENRFEGSIPPSLGNCK 441 (461)
Q Consensus 419 L~~L~l~~n~l~~~~p~~l~~l~ 441 (461)
|+.+.+..+ ++..-..+|.+++
T Consensus 335 L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 335 LSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCEEEECCc-cCEEchhHhhCCC
Confidence 666666443 3323334555543
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.75 E-value=3.4e-06 Score=81.27 Aligned_cols=312 Identities=15% Similarity=0.081 Sum_probs=180.9
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
..++.+.+.. +++..-..+|.++.+|+.+++..+ ++..-..+|..+ +|+.+.+..+ +...-...|.. .+|+.+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence 3466666653 355444568999999999999754 554445667776 6888877654 43222334544 48999998
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhh
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (461)
..+ +.......+.+. +|+.+.+..+ ++......+..+..++.+.+..+................... ..
T Consensus 121 p~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 189 (379)
T 4h09_A 121 PGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL--------ES 189 (379)
T ss_dssp CTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE--------EE
T ss_pred CCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceeccccccee--------cc
Confidence 754 222223344444 5666666543 333344567778888888877654331111000000000000 00
Q ss_pred ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhc
Q 037538 238 GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA 317 (461)
Q Consensus 238 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 317 (461)
......+..+.+.... .......+..+.+++.+.+..+ +.......+..+..|+.+.+..+ ++.. -..++.
T Consensus 190 ~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I------~~~aF~ 260 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSI------GSFLLQ 260 (379)
T ss_dssp CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEE------CTTTTT
T ss_pred ccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEe------Cccccc
Confidence 0111222222222211 1122234556677777777654 33344556777788888887654 3321 123566
Q ss_pred CCCCCCEEEccCCcCccccch-HHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCC
Q 037538 318 NCTSLEVLGLAQNGFGGEMPI-SIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLE 396 (461)
Q Consensus 318 ~~~~L~~L~L~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~ 396 (461)
++.+|+.+.+..+ +. .++. .+.... +|+.+.+.++.++..-..+|.+|.+|+.++|..+ ++..-...|.+|.+|+
T Consensus 261 ~~~~l~~i~l~~~-i~-~i~~~aF~~c~-~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 261 NCTALKTLNFYAK-VK-TVPYLLCSGCS-NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TCTTCCEEEECCC-CS-EECTTTTTTCT-TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeehhcccccccc-ce-ecccccccccc-ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 7778888887643 33 2332 333333 8888888888777666678889999999999754 5544456788999999
Q ss_pred eeccccccCcccCChhhhcCccC
Q 037538 397 GLELNANKFSGFMPSSLGNLTVL 419 (461)
Q Consensus 397 ~L~L~~n~l~~~~~~~~~~l~~L 419 (461)
.+.+..+ ++..-..+|.+++.+
T Consensus 337 ~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 337 TISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CCCCCTT-CCEECTTTTTTSSCC
T ss_pred EEEECCc-cCEEchhHhhCCCCC
Confidence 9999765 554556678777544
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.66 E-value=2e-08 Score=86.47 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=22.6
Q ss_pred cCCCCCCCCEEEcccC-cCcccCCCCchhhhhhcCCCCCCEEEccCCcCc
Q 037538 285 NFGSLKDLVRLNFDQN-ELGSREIGDLNFLKFLANCTSLEVLGLAQNGFG 333 (461)
Q Consensus 285 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~ 333 (461)
.+...++|++|+|++| .++..... .+...+...++|++|+|++|.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~--~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLK--ACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHH--HHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHH--HHHHHHHhCCCcCEEECcCCCCC
Confidence 3444555555555555 55432111 23334444555555555555554
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.64 E-value=9.6e-10 Score=99.72 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=54.4
Q ss_pred CCCCCCCEEEccCCcCCC--cCchhhcCCCCCcEEEccCCCCcccCCccCCCCC--CCCEEECccCCCcccCC-------
Q 037538 147 SHCTELRSFEASANDFIG--QIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFS--SLQVLLLARNNLHGSIP------- 215 (461)
Q Consensus 147 ~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~------- 215 (461)
.++++|+.|+|++|++++ .+|..+..+++|++|+|++|.+.+. ..+..+. +|++|++++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 356677777777777765 4456666777777777777777743 2233333 78888888888876555
Q ss_pred hhhhcCCCCcEEec
Q 037538 216 NELGQLSALGFFTL 229 (461)
Q Consensus 216 ~~l~~l~~L~~L~l 229 (461)
..+..+++|+.|+=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 23667788877763
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=2.2e-08 Score=86.26 Aligned_cols=62 Identities=21% Similarity=0.206 Sum_probs=26.6
Q ss_pred CCCCCeeecccCcCccc----cchhhhcCCCCCeecc--ccccCccc----CChhhhcCccCCeeecccccc
Q 037538 368 LVNLSLLGLEGNNLSGS----VPEVIGRLNKLEGLEL--NANKFSGF----MPSSLGNLTVLSRLLMEENRF 429 (461)
Q Consensus 368 l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l 429 (461)
.++|++|+|++|.+... +...+...++|++|+| ++|.++.. +.+.+...++|+.|++++|.+
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 34444444444444432 2233333444444444 44444422 222333344555555555544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=6.4e-08 Score=87.73 Aligned_cols=80 Identities=23% Similarity=0.307 Sum_probs=50.3
Q ss_pred hcCCCCCeeecccCcCcc--ccchhhhcCCCCCeeccccccCcccCChhhhcCc--cCCeeecccccccccCCc------
Q 037538 366 ENLVNLSLLGLEGNNLSG--SVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLT--VLSRLLMEENRFEGSIPP------ 435 (461)
Q Consensus 366 ~~l~~L~~L~Ls~n~l~~--~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~p~------ 435 (461)
.++++|+.|+|++|.+++ .++..+..+++|+.|+|++|++++. ..+..++ +|++|++++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456677777777777765 3445556677777777777777643 2333333 677777777777765542
Q ss_pred -cCCCCCCCCEEE
Q 037538 436 -SLGNCKKLQVLN 447 (461)
Q Consensus 436 -~l~~l~~L~~L~ 447 (461)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 245567777665
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=1.5e-07 Score=79.17 Aligned_cols=83 Identities=11% Similarity=0.074 Sum_probs=48.1
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCc-CccccchhhhcC----CCCCeecccccc-CcccCChhhhcCccC
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNN-LSGSVPEVIGRL----NKLEGLELNANK-FSGFMPSSLGNLTVL 419 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~~----~~L~~L~L~~n~-l~~~~~~~~~~l~~L 419 (461)
.|+.|++++|.++..--..+..+++|++|+|++|. +++.--..+... ++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 56667777666655444445666666666666663 554333334432 356666666663 554444455566666
Q ss_pred Ceeeccccc
Q 037538 420 SRLLMEENR 428 (461)
Q Consensus 420 ~~L~l~~n~ 428 (461)
+.|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666654
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=4.8e-06 Score=70.00 Aligned_cols=85 Identities=9% Similarity=0.031 Sum_probs=48.8
Q ss_pred CCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCc-CccccchHHHhc---cccccEEEccCCc-CcccCchh
Q 037538 290 KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNG-FGGEMPISIANL---STHLRILTMGYNL-MHGNIPVG 364 (461)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~-~~~~~~~~~~~~---~~~L~~L~l~~n~-l~~~~p~~ 364 (461)
..|+.|+++++.++. .-...+.++++|+.|+|++|. +++..-..+... .++|++|++++|. +++.--..
T Consensus 61 ~~L~~LDLs~~~Itd------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS------IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCG------GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCccH------HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 356677777766655 333445667777777777764 554443444432 1256666666664 55433344
Q ss_pred hhcCCCCCeeecccCc
Q 037538 365 IENLVNLSLLGLEGNN 380 (461)
Q Consensus 365 ~~~l~~L~~L~Ls~n~ 380 (461)
+..+++|++|++++|.
T Consensus 135 L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGGCTTCCEEEEESCT
T ss_pred HhcCCCCCEEECCCCC
Confidence 5556666666666664
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.60 E-value=4.7e-05 Score=65.20 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=10.5
Q ss_pred hhhhcCCCCCCEEEccCCcCc
Q 037538 313 LKFLANCTSLEVLGLAQNGFG 333 (461)
Q Consensus 313 ~~~l~~~~~L~~L~L~~n~~~ 333 (461)
..++...+.|+.|+|++|.+.
T Consensus 63 a~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCB
T ss_pred HHHHhhCCCcCEEEccCCCCC
Confidence 344444455555555555554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.49 E-value=7.9e-05 Score=63.78 Aligned_cols=91 Identities=11% Similarity=0.209 Sum_probs=58.7
Q ss_pred hcCCCCCCEEEcccc-ccccc----CCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCcccc
Q 037538 262 LSNASNLQVLDFAEN-GLTGT----IPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEM 336 (461)
Q Consensus 262 l~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~ 336 (461)
+.+-+.|++|++++| .+... +.+.+..-+.|+.|+|++|++++.... .+..++...+.|+.|+|+.|.|++..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~--alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR--GLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT--THHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH--HHHHHHhcCCccCeEecCCCcCCHHH
Confidence 445577888888875 66432 334556677888888888888764333 45566777788888888888887544
Q ss_pred chHHHhc---cccccEEEccC
Q 037538 337 PISIANL---STHLRILTMGY 354 (461)
Q Consensus 337 ~~~~~~~---~~~L~~L~l~~ 354 (461)
...+... ...|++|++++
T Consensus 115 a~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHHhhCCceeEEECCC
Confidence 3333221 12455555554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.54 E-value=0.0025 Score=50.68 Aligned_cols=57 Identities=21% Similarity=0.332 Sum_probs=42.3
Q ss_pred CeeecccCcCc-cccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeeccccccc
Q 037538 372 SLLGLEGNNLS-GSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFE 430 (461)
Q Consensus 372 ~~L~Ls~n~l~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 430 (461)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+..-+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36778888876 35665443 46888888888888665667788888888888888764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.35 E-value=0.0041 Score=49.45 Aligned_cols=57 Identities=26% Similarity=0.427 Sum_probs=46.6
Q ss_pred cEEEccCCcCc-ccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCc
Q 037538 348 RILTMGYNLMH-GNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFS 406 (461)
Q Consensus 348 ~~L~l~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 406 (461)
..++.+++.++ ..+|..+. ++|+.|+|++|+++..-+..|..+++|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888886 35665433 57999999999999666677889999999999999886
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=47.49 E-value=23 Score=25.92 Aligned_cols=46 Identities=11% Similarity=0.206 Sum_probs=32.2
Q ss_pred cCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeeccc
Q 037538 380 NLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEE 426 (461)
Q Consensus 380 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 426 (461)
.++..-...|.+|.+|+.+.+-.+ ++..-..+|.+|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444456778888888888765 4435566788888888888865
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=37.74 E-value=93 Score=22.54 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=5.2
Q ss_pred cccCCCCCCEEec
Q 037538 97 SIGNLTNLTGINL 109 (461)
Q Consensus 97 ~l~~l~~L~~L~L 109 (461)
+|.+++.|+.+.+
T Consensus 15 aF~~c~~L~~i~i 27 (100)
T 2lz0_A 15 LFAGNTVIREITV 27 (100)
T ss_dssp TTTTCTTCCCEEE
T ss_pred HhcCCCCCcEEEc
Confidence 3333444444444
Done!