BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037539
(622 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 190/456 (41%), Gaps = 92/456 (20%)
Query: 124 LNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNM-CSLKKLRLSYNKLSGQY-SQVIQNLS 181
L + M LK L LS +E G +P+ N+ SL L LS N SG + QN
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 182 FGCVVNSLEGLYLRWNDFTGPIP-HLGGFSSLEAWSLDVNCLNGTIDKXXXXXXXXXXXX 240
N+L+ LYL+ N FTG IP L S L + L N L+GTI
Sbjct: 391 -----NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL------- 438
Query: 241 XDGNSLRAISLCILTSPIGISDSIPDWFWDXXXXXXXXXXXXXHFRGKLPDLSLRFDDXX 300
+ LR + L + + IP + L L L F+D
Sbjct: 439 ---SKLRDLKLWLNM----LEGEIPQELM---------------YVKTLETLILDFNDLT 476
Query: 301 XXXXXXXXPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPL 360
P + L ++L+NNRL+G+IP +G L N+ L L NN +G +P+ L
Sbjct: 477 GEI-----PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 361 RNFSQLRVLDLEKNAIFGEIPTWI----GESLQNLIV----------------------- 393
+ L LDL N G IP + G+ N I
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 591
Query: 394 ------------------LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIP 435
++ S + G+ F+N G + LD+S N L G IP
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN-----GSMMFLDMSYNMLSGYIP 646
Query: 436 EEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVL 495
+EI + L LNL N ++G I ++G+L L+ LDLS N G IP ++S L+ L +
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 496 DLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPL 531
DLS NNLSG IP Q ++F + + N LCG PL
Sbjct: 707 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 126/392 (32%), Positives = 167/392 (42%), Gaps = 39/392 (9%)
Query: 133 VSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGL 192
V+L+ L +S + GIP F G+ +L+ L +S NKLSG +S+ I L+ L
Sbjct: 197 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS------TCTELKLL 249
Query: 193 YLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTI-DKXXXXXXXXXXXXXDGNSLRAISL 251
+ N F GPIP L SL+ SL N G I D GN
Sbjct: 250 NISSNQFVGPIPPLP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG--- 305
Query: 252 CILTSPIGISDSIPDWFWDXXXXXXXXXXXXXHFRGKLPD------LSLRFDDXXXXXXX 305
++P +F +F G+LP L+ D
Sbjct: 306 -----------AVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 353
Query: 306 XXXPDCWLHFD-RLFILNLANNRLSGKI-PD-SMGFLNNIWTLNLHNNRLTGKLPSPLRN 362
P+ + L L+L++N SG I P+ N + L L NN TGK+P L N
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 363 FSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRC 422
S+L L L N + G IP+ +G SL L L L N G IP + Y TL
Sbjct: 414 CSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELM--YVKTL---ET 467
Query: 423 LDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSI 482
L L N L G IP + + L ++LS N LTG I IG L +L L LS N FSG+I
Sbjct: 468 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Query: 483 PCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQS 514
P L L LDL+ N +G IP+ QS
Sbjct: 528 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 559
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 155/356 (43%), Gaps = 55/356 (15%)
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLD 218
LK L +S NK+SG CV +LE L + N+F+ IP LG S+L+ +
Sbjct: 177 LKHLAISGNKISGDVDVSR------CV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDIS 228
Query: 219 VNCLNGTIDKXXXXXXXXXXXXXDGNSLRAISLCILTSPIGISDSIPDWFWDXXXXXXXX 278
N L+G RAIS C + IS +
Sbjct: 229 GNKLSGDFS-------------------RAISTCTELKLLNISSN--------------- 254
Query: 279 XXXXXHFRGKLPDL---SLRFDDXXXXXXXXXXPDCWL-HFDRLFILNLANNRLSGKIPD 334
F G +P L SL++ PD D L L+L+ N G +P
Sbjct: 255 -----QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309
Query: 335 SMGFLNNIWTLNLHNNRLTGKLP-SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393
G + + +L L +N +G+LP L L+VLDL N GE+P + +L+
Sbjct: 310 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNH 453
L L SN F G I K+TL + L L +N G IP + + L++L+LS N+
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTL---QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 454 LTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509
L+G I +G L+ L L L N+ G IP L + L L L +N+L+G+IPSG
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 102/246 (41%), Gaps = 62/246 (25%)
Query: 321 LNLANNRLSGKIPD--SMGFLNNIWTLNLHNNRLT--GKLPSPLRNFSQLRVLDLEKNAI 376
L+L+ N LSG + S+G + + LN+ +N L GK+ L+ + L VLDL N+I
Sbjct: 102 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLSANSI 160
Query: 377 FGE-IPTWI-----GE------------------SLQNLIVLSLKSNKFHGNIPYQFENE 412
G + W+ GE NL L + SN F IP+ +
Sbjct: 161 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGD-- 218
Query: 413 YKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLD 472
++ LD+S NKL G I L LN+S N GPI P L SL +L
Sbjct: 219 ----CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 272
Query: 473 LSRNLFSGSIPCSLS-QLSGLGVLDLS------------------------YNNLSGKIP 507
L+ N F+G IP LS L LDLS NN SG++P
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 508 SGTQLQ 513
T L+
Sbjct: 333 MDTLLK 338
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
Query: 444 LIALNLSRNHLTGPIT--PKIGELTSLDFLDLSRNL--FSGSIPCSLSQLSGLGVLDLSY 499
L +L+LSRN L+GP+T +G + L FL++S N F G + L +L+ L VLDLS
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 157
Query: 500 NNLSG 504
N++SG
Sbjct: 158 NSISG 162
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 190/456 (41%), Gaps = 92/456 (20%)
Query: 124 LNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNM-CSLKKLRLSYNKLSGQY-SQVIQNLS 181
L + M LK L LS +E G +P+ N+ SL L LS N SG + QN
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 182 FGCVVNSLEGLYLRWNDFTGPIP-HLGGFSSLEAWSLDVNCLNGTIDKXXXXXXXXXXXX 240
N+L+ LYL+ N FTG IP L S L + L N L+GTI
Sbjct: 394 -----NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL------- 441
Query: 241 XDGNSLRAISLCILTSPIGISDSIPDWFWDXXXXXXXXXXXXXHFRGKLPDLSLRFDDXX 300
+ LR + L + + IP + L L L F+D
Sbjct: 442 ---SKLRDLKLWLNM----LEGEIPQELM---------------YVKTLETLILDFNDLT 479
Query: 301 XXXXXXXXPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPL 360
P + L ++L+NNRL+G+IP +G L N+ L L NN +G +P+ L
Sbjct: 480 GEI-----PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 361 RNFSQLRVLDLEKNAIFGEIPTWI----GESLQNLIV----------------------- 393
+ L LDL N G IP + G+ N I
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 394 ------------------LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIP 435
++ S + G+ F+N G + LD+S N L G IP
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN-----GSMMFLDMSYNMLSGYIP 649
Query: 436 EEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVL 495
+EI + L LNL N ++G I ++G+L L+ LDLS N G IP ++S L+ L +
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 496 DLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPL 531
DLS NNLSG IP Q ++F + + N LCG PL
Sbjct: 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 126/395 (31%), Positives = 167/395 (42%), Gaps = 39/395 (9%)
Query: 130 QHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSL 189
V+L+ L +S + GIP F G+ +L+ L +S NKLSG +S+ I L
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS------TCTEL 249
Query: 190 EGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTI-DKXXXXXXXXXXXXXDGNSLRA 248
+ L + N F GPIP L SL+ SL N G I D GN
Sbjct: 250 KLLNISSNQFVGPIPPLP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 249 ISLCILTSPIGISDSIPDWFWDXXXXXXXXXXXXXHFRGKLPD------LSLRFDDXXXX 302
++P +F +F G+LP L+ D
Sbjct: 309 --------------AVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 303 XXXXXXPDCWLHFD-RLFILNLANNRLSGKI-PD-SMGFLNNIWTLNLHNNRLTGKLPSP 359
P+ + L L+L++N SG I P+ N + L L NN TGK+P
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 360 LRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGL 419
L N S+L L L N + G IP+ +G SL L L L N G IP + Y TL
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELM--YVKTL-- 468
Query: 420 VRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479
L L N L G IP + + L ++LS N LTG I IG L +L L LS N FS
Sbjct: 469 -ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 480 GSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQS 514
G+IP L L LDL+ N +G IP+ QS
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 155/356 (43%), Gaps = 55/356 (15%)
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLD 218
LK L +S NK+SG CV +LE L + N+F+ IP LG S+L+ +
Sbjct: 180 LKHLAISGNKISGDVDVSR------CV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDIS 231
Query: 219 VNCLNGTIDKXXXXXXXXXXXXXDGNSLRAISLCILTSPIGISDSIPDWFWDXXXXXXXX 278
N L+G RAIS C + IS +
Sbjct: 232 GNKLSGDFS-------------------RAISTCTELKLLNISSN--------------- 257
Query: 279 XXXXXHFRGKLPDL---SLRFDDXXXXXXXXXXPDCWL-HFDRLFILNLANNRLSGKIPD 334
F G +P L SL++ PD D L L+L+ N G +P
Sbjct: 258 -----QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 335 SMGFLNNIWTLNLHNNRLTGKLP-SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393
G + + +L L +N +G+LP L L+VLDL N GE+P + +L+
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNH 453
L L SN F G I K+TL + L L +N G IP + + L++L+LS N+
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTL---QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 454 LTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509
L+G I +G L+ L L L N+ G IP L + L L L +N+L+G+IPSG
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 102/246 (41%), Gaps = 62/246 (25%)
Query: 321 LNLANNRLSGKIPD--SMGFLNNIWTLNLHNNRL--TGKLPSPLRNFSQLRVLDLEKNAI 376
L+L+ N LSG + S+G + + LN+ +N L GK+ L+ + L VLDL N+I
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLSANSI 163
Query: 377 FGE-IPTWI-----GE------------------SLQNLIVLSLKSNKFHGNIPYQFENE 412
G + W+ GE NL L + SN F IP+ +
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGD-- 221
Query: 413 YKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLD 472
++ LD+S NKL G I L LN+S N GPI P L SL +L
Sbjct: 222 ----CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275
Query: 473 LSRNLFSGSIPCSLS-QLSGLGVLDLS------------------------YNNLSGKIP 507
L+ N F+G IP LS L LDLS NN SG++P
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 508 SGTQLQ 513
T L+
Sbjct: 336 MDTLLK 341
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
Query: 444 LIALNLSRNHLTGPIT--PKIGELTSLDFLDLSRNL--FSGSIPCSLSQLSGLGVLDLSY 499
L +L+LSRN L+GP+T +G + L FL++S N F G + L +L+ L VLDLS
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 160
Query: 500 NNLSG 504
N++SG
Sbjct: 161 NSISG 165
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 110/229 (48%), Gaps = 29/229 (12%)
Query: 326 NRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIG 385
N L G IP ++ L + L + + ++G +P L L LD NA+ G +P I
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI- 145
Query: 386 ESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445
SL NL+ ++ N+ G IP + Y S L + +S N+L G IP +L L
Sbjct: 146 SSLPNLVGITFDGNRISGAIP----DSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLA 200
Query: 446 ALNLSRNHLTGPIT-----------------------PKIGELTSLDFLDLSRNLFSGSI 482
++LSRN L G + K+G +L+ LDL N G++
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL 260
Query: 483 PCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPL 531
P L+QL L L++S+NNL G+IP G LQ F+ S YA N LCG PL
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 309 PDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQL-R 367
PD L L+ + N LSG +P S+ L N+ + NR++G +P +FS+L
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177
Query: 368 VLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQF------------ENEYKS 415
+ + +N + G+IP NL + L N G+ F +N
Sbjct: 178 SMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235
Query: 416 TLGLV------RCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD 469
LG V LDL +N++ G +P+ + L L +LN+S N+L G I P+ G L D
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFD 294
Query: 470 FLDLSRN 476
+ N
Sbjct: 295 VSAYANN 301
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 128 AFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVN 187
A + L LY++ + + G IP F + +L L SYN LSG I +L
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP------ 149
Query: 188 SLEGLYLRWNDFTGPIPH-LGGFSSL-EAWSLDVNCLNGTI 226
+L G+ N +G IP G FS L + ++ N L G I
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 10/165 (6%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLT--GKLPSPLRNFSQLRVLDLEKNAIFG 378
L+ +NN L+ + ++ G L + TL L N+L K+ L+ LD+ +N++
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 379 EIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEI 438
+ ++L+ L++ SN I ++ ++ LDL SNK+ +IP+++
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTI-------FRCLPPRIKVLDLHSNKI-KSIPKQV 440
Query: 439 MDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIP 483
+ L L LN++ N L LTSL + L N + S P
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 96/203 (47%), Gaps = 24/203 (11%)
Query: 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVL 369
D D + L +RL K D + +LNN+ +N NN+LT +PL+N ++L +
Sbjct: 33 DTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDI 90
Query: 370 DLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNK 429
+ N I P +L NL L+L +N+ P K+ L R L+LSSN
Sbjct: 91 LMNNNQIADITPL---ANLTNLTGLTLFNNQITDIDP------LKNLTNLNR-LELSSNT 140
Query: 430 LDGAIPEEIMDLVGLIA---LNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSL 486
+ +I L GL + LN S N +T + P + LT+L+ LD+S N S L
Sbjct: 141 I-----SDISALSGLTSLQQLNFSSNQVTD-LKP-LANLTTLERLDISSNKVSDI--SVL 191
Query: 487 SQLSGLGVLDLSYNNLSGKIPSG 509
++L+ L L + N +S P G
Sbjct: 192 AKLTNLESLIATNNQISDITPLG 214
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 101/233 (43%), Gaps = 45/233 (19%)
Query: 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLP------------ 357
D D + L +RL K D + +LNN+ +N NN+LT P
Sbjct: 33 DTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILM 92
Query: 358 --------SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSN------KFHG 403
+PL N + L L L N I P ++L NL L L SN G
Sbjct: 93 NNNQIADITPLANLTNLTGLTLFNNQITDIDPL---KNLTNLNRLELSSNTISDISALSG 149
Query: 404 NIPYQ---FENEYK-----STLGLVRCLDLSSNKL-DGAIPEEIMDLVGLIALNLSRNHL 454
Q F N+ + L + LD+SSNK+ D ++ ++ +L LIA N N +
Sbjct: 150 LTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQI 206
Query: 455 TGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIP 507
+ ITP +G LT+LD L L+ N +L+ L+ L LDL+ N +S P
Sbjct: 207 SD-ITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 255
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 101/233 (43%), Gaps = 45/233 (19%)
Query: 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLP------------ 357
D D + L +RL K D + +LNN+ +N NN+LT P
Sbjct: 33 DTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILM 92
Query: 358 --------SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSN------KFHG 403
+PL N + L L L N I P ++L NL L L SN G
Sbjct: 93 NNNQIADITPLANLTNLTGLTLFNNQITDIDPL---KNLTNLNRLELSSNTISDISALSG 149
Query: 404 NIPYQ---FENEYK-----STLGLVRCLDLSSNKL-DGAIPEEIMDLVGLIALNLSRNHL 454
Q F N+ + L + LD+SSNK+ D ++ ++ +L LIA N N +
Sbjct: 150 LTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQI 206
Query: 455 TGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIP 507
+ ITP +G LT+LD L L+ N +L+ L+ L LDL+ N +S P
Sbjct: 207 SD-ITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 255
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 101/233 (43%), Gaps = 45/233 (19%)
Query: 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLP------------ 357
D D + L +RL K D + +LNN+ +N NN+LT P
Sbjct: 38 DTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILM 97
Query: 358 --------SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSN------KFHG 403
+PL N + L L L N I P ++L NL L L SN G
Sbjct: 98 NNNQIADITPLANLTNLTGLTLFNNQITDIDPL---KNLTNLNRLELSSNTISDISALSG 154
Query: 404 NIPYQ---FENEYK-----STLGLVRCLDLSSNKL-DGAIPEEIMDLVGLIALNLSRNHL 454
Q F N+ + L + LD+SSNK+ D ++ ++ +L LIA N N +
Sbjct: 155 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQI 211
Query: 455 TGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIP 507
+ ITP +G LT+LD L L+ N +L+ L+ L LDL+ N +S P
Sbjct: 212 SD-ITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 260
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 101/233 (43%), Gaps = 45/233 (19%)
Query: 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLP------------ 357
D D + L +RL K D + +LNN+ +N NN+LT P
Sbjct: 37 DTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILM 96
Query: 358 --------SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSN------KFHG 403
+PL N + L L L N I P ++L NL L L SN G
Sbjct: 97 NNNQIADITPLANLTNLTGLTLFNNQITDIDPL---KNLTNLNRLELSSNTISDISALSG 153
Query: 404 NIPYQ---FENEYK-----STLGLVRCLDLSSNKL-DGAIPEEIMDLVGLIALNLSRNHL 454
Q F N+ + L + LD+SSNK+ D ++ ++ +L LIA N N +
Sbjct: 154 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQI 210
Query: 455 TGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIP 507
+ ITP +G LT+LD L L+ N +L+ L+ L LDL+ N +S P
Sbjct: 211 SD-ITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 259
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG--KLPSPLRNFSQLRVLDLEKNAIFG 378
LN N + + L + TL L N L K+ +N S L LD+ N++
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 379 EIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEI 438
++++VL+L SN G++ ++ V+ LDL +N++ +IP+++
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSV-------FRCLPPKVKVLDLHNNRI-MSIPKDV 469
Query: 439 MDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIP 483
L L LN++ N L LTSL ++ L N + + P
Sbjct: 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNA 375
+ + +LNL++N L+G + + + L+LHNNR+ +P + + L+ L++ N
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQ 484
Query: 376 IFGEIPTWIGESLQNLIVLSLKSNKFHGNIP 406
+ +P + + L +L + L N + P
Sbjct: 485 L-KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 99/241 (41%), Gaps = 60/241 (24%)
Query: 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLP------------ 357
D D + L +RL K D + +LNN+ +N NN+LT P
Sbjct: 33 DTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILM 92
Query: 358 ------------------------------SPLRNFSQLRVLDLEKNAIFGEIPTWIGES 387
PL+N + L L+L N I +I G
Sbjct: 93 NNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-- 149
Query: 388 LQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKL-DGAIPEEIMDLVGLIA 446
L +L LS SN+ P + L + LD+SSNK+ D ++ ++ +L LIA
Sbjct: 150 LTSLQQLSFSSNQVTDLKPL-------ANLTTLERLDISSNKVSDISVLAKLTNLESLIA 202
Query: 447 LNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKI 506
N N ++ ITP +G LT+LD L L+ N +L+ L+ L LDL+ N +S
Sbjct: 203 TN---NQISD-ITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA 255
Query: 507 P 507
P
Sbjct: 256 P 256
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 99/241 (41%), Gaps = 60/241 (24%)
Query: 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLP------------ 357
D D + L +RL K D + +LNN+ +N NN+LT P
Sbjct: 33 DTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILM 92
Query: 358 ------------------------------SPLRNFSQLRVLDLEKNAIFGEIPTWIGES 387
PL+N + L L+L N I +I G
Sbjct: 93 NNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-- 149
Query: 388 LQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKL-DGAIPEEIMDLVGLIA 446
L +L LS SN+ P + L + LD+SSNK+ D ++ ++ +L LIA
Sbjct: 150 LTSLQQLSFSSNQVTDLKPL-------ANLTTLERLDISSNKVSDISVLAKLTNLESLIA 202
Query: 447 LNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKI 506
N N ++ ITP +G LT+LD L L+ N +L+ L+ L LDL+ N +S
Sbjct: 203 TN---NQISD-ITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA 255
Query: 507 P 507
P
Sbjct: 256 P 256
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 86/190 (45%), Gaps = 9/190 (4%)
Query: 318 LFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIF 377
L +LNL +N LS + F N+ L+L +N + +P +N L LDL N +
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGL- 133
Query: 378 GEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEE 437
G L+NL L L NK + E S+L R LDLSSN L P
Sbjct: 134 SSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSL---RKLDLSSNPLKEFSPGC 190
Query: 438 IMDLVGLIALNLSRNHLTGPITPKIG-EL--TSLDFLDLSRNLFSGSIPCSLSQL--SGL 492
+ L AL L+ L +T K+ EL TS+ L L+ N + + S L + L
Sbjct: 191 FQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNL 250
Query: 493 GVLDLSYNNL 502
LDLSYNNL
Sbjct: 251 TQLDLSYNNL 260
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 332 IPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNL 391
IPD + +NI LNL +N+L P+ +SQL +LD N+I ++ + + L L
Sbjct: 19 IPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSI-SKLEPELCQILPLL 75
Query: 392 IVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSR 451
VL+L+ N+ Q ++ + LDL SN + + LI L+LS
Sbjct: 76 KVLNLQHNELS-----QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSH 130
Query: 452 NHLTG 456
N L+
Sbjct: 131 NGLSS 135
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 27/162 (16%)
Query: 342 IWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKF 401
+ TLNL N ++ QLR+LDL N I ++ L+N+ + L NK+
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
Query: 402 HGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPK 461
L SS L ++ ++ V L +++S P P
Sbjct: 443 LQ-------------------LSTSSFALVPSLQRLMLRRVALKNVDIS----PSPFRP- 478
Query: 462 IGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503
L +L LDLS N + L L L +LD +NNL+
Sbjct: 479 ---LRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 388 LQNLIVLSLK--SNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445
L N+ +SL S K+ ++P F+ + +L ++RC +L P +DL L
Sbjct: 284 LANVSAMSLAGVSIKYLEDVPKHFKWQ---SLSIIRC------QL-KQFP--TLDLPFLK 331
Query: 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQL--SGLGVLDLSYN 500
+L L+ N G I+ K L SL +LDLSRN S S CS S L + L LDLS+N
Sbjct: 332 SLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 388 LQNLIVLSLK--SNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445
L N+ +SL S K+ ++P F+ + +L ++RC +L P +DL L
Sbjct: 279 LANVSAMSLAGVSIKYLEDVPKHFKWQ---SLSIIRC------QL-KQFP--TLDLPFLK 326
Query: 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQL--SGLGVLDLSYN 500
+L L+ N G I+ K L SL +LDLSRN S S CS S L + L LDLS+N
Sbjct: 327 SLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 381
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 14/173 (8%)
Query: 340 NNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSN 399
NN +++ + +LT +PS + + + LDL+ N + +P+ L L +L L N
Sbjct: 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDN 71
Query: 400 KFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD-LVGLIALNLSRNHLTGPI 458
K +P E K+ + L ++ NKL A+P + D LV L L L RN L +
Sbjct: 72 KLQ-TLPAGIFKELKN----LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-L 124
Query: 459 TPKI-GELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT 510
P++ LT L +L L N +L+ L L L YNN ++P G
Sbjct: 125 PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGA 176
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 7/166 (4%)
Query: 345 LNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGN 404
L+L +N+L+ ++LR+L L N + +P I + L+NL L + NK
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQA- 99
Query: 405 IPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGE 464
+P + + L L L N+L P L L L+L N L +
Sbjct: 100 LPIGV---FDQLVNLAE-LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155
Query: 465 LTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT 510
LTSL L L N + +L+ L L L N L ++P G
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA 200
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 129 FQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNS 188
F +V+L L L ++L+ P+ F ++ L L L YN+L V L+ S
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT------S 158
Query: 189 LEGLYLRWNDFTGPIPHLGGFSSL 212
L+ L L +N+ +P G F L
Sbjct: 159 LKELRL-YNNQLKRVPE-GAFDKL 180
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 127 KAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLS----GQYSQVIQNLSF 182
KAF + L+ LYL+D++L+ F + +L+ L ++ NKL G + Q++
Sbjct: 55 KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114
Query: 183 GCVVNSLEGLYLRWNDFTGPIPHLG-GFSSLEA 214
N L+ L R D + +L G++ L++
Sbjct: 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 314 HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEK 373
++ L +++L+NNR+S S + + TL L NRL P LR+L L
Sbjct: 52 NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111
Query: 374 NAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQF-----ENEYKSTLGLVRC 422
N I +P L L L++ +N + + Q+ ++EYK G+ RC
Sbjct: 112 NDI-SVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEP-GIARC 163
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 25/181 (13%)
Query: 342 IWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKF 401
+ +LNL +R + + + F+QL+ LDL + G G +L +VLS+ N F
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSV--NHF 310
Query: 402 H-------GNIP-----YQFENEYKSTLGL--------VRCLDLSSNKLDGA--IPEEIM 439
N P Y N K LG+ ++ LDLS N ++ + ++
Sbjct: 311 DQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLK 370
Query: 440 DLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCS-LSQLSGLGVLDLS 498
+L L LNLS N G + E L+ LDL+ + P S L L VL+L+
Sbjct: 371 NLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLT 430
Query: 499 Y 499
Y
Sbjct: 431 Y 431
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 19/202 (9%)
Query: 311 CWLHFDRLFILNLANNRLSGKIPDSMGF--LNNIWTLNLHNNRLTGKLPSPLRNFSQLRV 368
C L L+L++N + S+ L+++ TLNL +N G + QL +
Sbjct: 342 CLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLEL 401
Query: 369 LDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQF---ENEY-KSTLGLVRCLD 424
LDL + P ++L L VL N+ Y F N++ + L ++R L+
Sbjct: 402 LDLAFTRLHINAPQSPFQNLHFLQVL---------NLTYCFLDTSNQHLLAGLPVLRHLN 452
Query: 425 LSSNKL-DGAIPE-EIMDLVG-LIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS 481
L N DG I + ++ VG L L LS L L + +DLS N +
Sbjct: 453 LKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCD 512
Query: 482 IPCSLSQLSGLGVLDLSYNNLS 503
SLS L G+ L+L+ N+++
Sbjct: 513 SIDSLSHLKGI-YLNLAANSIN 533
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 9/184 (4%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNF--SQLRVLDLEKNAIFG 378
L L +N+L L + L+L +N L+ K +F + L+ LDL N +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92
Query: 379 EIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEI 438
++G L+ L L + H N+ E +L + LD+S A
Sbjct: 93 MSSNFLG--LEQLEHLDFQ----HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146
Query: 439 MDLVGLIALNLSRNHLTGPITPKI-GELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDL 497
L L L ++ N P I EL +L FLDLS+ P + + LS L VL++
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 498 SYNN 501
S+NN
Sbjct: 207 SHNN 210
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 41/100 (41%)
Query: 309 PDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRV 368
PD + L L+L+ +L P + L+++ LN+ +N P + + L+V
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227
Query: 369 LDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQ 408
LD N I + +L L+L N F +Q
Sbjct: 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 64/165 (38%), Gaps = 13/165 (7%)
Query: 358 SPLRNFSQLRVLDLEKNAIFGEIP--------TWIGESLQNLIVLSLKSNKFHGNIPYQF 409
S L+ S+ V +N I+ +I I L +L VL + N F N
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170
Query: 410 ENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD 469
E ++ + LDLS +L+ P L L LN+S N+ T L SL
Sbjct: 171 FTELRN----LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 470 FLDLSRNLFSGSIPCSLSQL-SGLGVLDLSYNNLSGKIPSGTQLQ 513
LD S N S L S L L+L+ N+ + + LQ
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 271
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 10/185 (5%)
Query: 320 ILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGE 379
+L+L NN+++ L N+ TL L NN+++ P +L L L KN + E
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KE 114
Query: 380 IPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIM 439
+P + ++LQ L + H N + + L + ++L +N L + E
Sbjct: 115 LPEKMPKTLQEL--------RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN-G 165
Query: 440 DLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSY 499
G+ L+ R T T G SL L L N + SL L+ L L LS+
Sbjct: 166 AFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 500 NNLSG 504
N++S
Sbjct: 226 NSISA 230
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 77/184 (41%), Gaps = 15/184 (8%)
Query: 356 LPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKS 415
+P L +++ L LDL N + W L NL L L N H N +E
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN--HLNF---ISSEAFV 85
Query: 416 TLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR 475
+ +R LDLSSN L DL L L L NH+ ++ L L LS+
Sbjct: 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145
Query: 476 NLFSGSIPCSL----SQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPL 531
N S P L ++L L +LDLS N L K+P T LQ A V G L L PL
Sbjct: 146 NQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPL-TDLQKLPAWVKNG-LYLHNNPL 201
Query: 532 ANMC 535
C
Sbjct: 202 ECDC 205
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 364 SQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCL 423
+ L+ LDL N + ++G L+ L L + H N+ E +L + L
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLG--LEQLEHLDFQ----HSNLKQMSEFSVFLSLRNLIYL 426
Query: 424 DLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKI-GELTSLDFLDLSRNLFSGSI 482
D+S A L L L ++ N P I EL +L FLDLS+
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 483 PCSLSQLSGLGVLDLSYNN 501
P + + LS L VL++S+NN
Sbjct: 487 PTAFNSLSSLQVLNMSHNN 505
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 41/100 (41%)
Query: 309 PDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRV 368
PD + L L+L+ +L P + L+++ LN+ +N P + + L+V
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522
Query: 369 LDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQ 408
LD N I + +L L+L N F +Q
Sbjct: 523 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 64/165 (38%), Gaps = 13/165 (7%)
Query: 358 SPLRNFSQLRVLDLEKNAIFGEIP--------TWIGESLQNLIVLSLKSNKFHGNIPYQF 409
S L+ S+ V +N I+ +I I L +L VL + N F N
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 410 ENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD 469
E ++ + LDLS +L+ P L L LN+S N+ T L SL
Sbjct: 466 FTELRN----LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 470 FLDLSRNLFSGSIPCSLSQL-SGLGVLDLSYNNLSGKIPSGTQLQ 513
LD S N S L S L L+L+ N+ + + LQ
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 566
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 464 ELTSLDFLDLSRNLFSGSIPCSLSQL--SGLGVLDLSYN 500
+L SL+FLDLSRN S CS S + L LDLS+N
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 10/185 (5%)
Query: 320 ILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGE 379
+L+L NN+++ L N+ TL L NN+++ P +L L L KN + E
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KE 114
Query: 380 IPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIM 439
+P + ++LQ L + H N + + L + ++L +N L + E
Sbjct: 115 LPEKMPKTLQEL--------RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN-G 165
Query: 440 DLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSY 499
G+ L+ R T T G SL L L N + SL L+ L L LS+
Sbjct: 166 AFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 500 NNLSG 504
N++S
Sbjct: 226 NSISA 230
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 7/137 (5%)
Query: 366 LRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDL 425
L+ LDL N + ++G L+ L L + H N+ E +L + LD+
Sbjct: 399 LKYLDLSFNGVITMSSNFLG--LEQLEHLDFQ----HSNLKQMSEFSVFLSLRNLIYLDI 452
Query: 426 SSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKI-GELTSLDFLDLSRNLFSGSIPC 484
S A L L L ++ N P I EL +L FLDLS+ P
Sbjct: 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512
Query: 485 SLSQLSGLGVLDLSYNN 501
+ + LS L VL++S+NN
Sbjct: 513 AFNSLSSLQVLNMSHNN 529
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 41/100 (41%)
Query: 309 PDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRV 368
PD + L L+L+ +L P + L+++ LN+ +N P + + L+V
Sbjct: 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546
Query: 369 LDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQ 408
LD N I + +L L+L N F +Q
Sbjct: 547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 65/165 (39%), Gaps = 13/165 (7%)
Query: 358 SPLRNFSQLRVLDLEKNAIFGEIP--------TWIGESLQNLIVLSLKSNKFHGNIPYQF 409
S L+ S+ V +N I+ +I I L +L VL + N F N F
Sbjct: 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN----F 485
Query: 410 ENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD 469
+ + L + LDLS +L+ P L L LN+S N+ T L SL
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 470 FLDLSRNLFSGSIPCSLSQL-SGLGVLDLSYNNLSGKIPSGTQLQ 513
LD S N S L S L L+L+ N+ + + LQ
Sbjct: 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 590
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 464 ELTSLDFLDLSRNLFSGSIPCSLSQLS--GLGVLDLSYN 500
+L SL+FLDLSRN S CS S L LDLS+N
Sbjct: 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN 407
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 88/217 (40%), Gaps = 27/217 (12%)
Query: 339 LNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKS 398
L N+ +L + +N L + L L LEK + IPT L LIVL L+
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRH 185
Query: 399 NKFHGNIPYQFENEYKSTLGLVRCLDLSS-NKLDGAIPEEIMDLVGLIALNLSRNHLTGP 457
+ Y F+ Y+ ++ L++S LD P + L L +L+++ +LT
Sbjct: 186 LNINAIRDYSFKRLYR-----LKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAV 239
Query: 458 ITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIP---------- 507
+ L L FL+LS N S L +L L + L L+ P
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299
Query: 508 ----SGTQLQSFNASVY--AGNLELCGL---PLANMC 535
SG QL + SV+ GNLE L PLA C
Sbjct: 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 32/186 (17%)
Query: 320 ILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGE 379
+L+L NR+ D ++ L L+ N ++ P N LR L L N +
Sbjct: 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KL 94
Query: 380 IPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIM 439
IP + L NL L + NK + Y F++ Y ++ L++ N L
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-----LKSLEVGDNDL--------- 140
Query: 440 DLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPC-SLSQLSGLGVLDLS 498
+ +S +G L SL+ L L + + SIP +LS L GL VL L
Sbjct: 141 -------VYISHRAFSG--------LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLR 184
Query: 499 YNNLSG 504
+ N++
Sbjct: 185 HLNINA 190
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 124 LNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFG 183
L L F H+ L LYL ++L+ F + LK+LRL+ N+L Q I +F
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-----QSIPAGAFD 152
Query: 184 CVVNSLEGLYLRWNDFTGPIPHLGGFSSL 212
+ N L+ L L N +PH G F L
Sbjct: 153 KLTN-LQTLSLSTNQLQ-SVPH-GAFDRL 178
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 124 LNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFG 183
L L F H+ L LYL ++L+ F + LK+LRL+ N+L Q I +F
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-----QSIPAGAFD 152
Query: 184 CVVNSLEGLYLRWNDFTGPIPHLGGFSSL 212
+ N L+ L L N +PH G F L
Sbjct: 153 KLTN-LQTLSLSTNQLQ-SVPH-GAFDRL 178
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 64/182 (35%), Gaps = 5/182 (2%)
Query: 323 LANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPT 382
L NR+S S N+ L LH+N L + + L LDL NA +
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 383 WIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLV 442
L L L L P F L ++ L L N L + DL
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRG-----LAALQYLYLQDNALQALPDDTFRDLG 152
Query: 443 GLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNL 502
L L L N ++ L SLD L L +N + P + L L L L NNL
Sbjct: 153 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 212
Query: 503 SG 504
S
Sbjct: 213 SA 214
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 64/182 (35%), Gaps = 5/182 (2%)
Query: 323 LANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPT 382
L NR+S S N+ L LH+N L + + L LDL NA +
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 383 WIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLV 442
L L L L P F L ++ L L N L + DL
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRG-----LAALQYLYLQDNALQALPDDTFRDLG 153
Query: 443 GLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNL 502
L L L N ++ L SLD L L +N + P + L L L L NNL
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 503 SG 504
S
Sbjct: 214 SA 215
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 6/146 (4%)
Query: 358 SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFH-GNIPYQFENEYKST 416
SP +N LRVL+L + + + LQ+L L+L+ N F G+I +
Sbjct: 418 SPFQNLHLLRVLNL-SHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSIS---KTNLLQM 473
Query: 417 LGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRN 476
+G + L LSS L + L + L+LS N LTG + L L +L+++ N
Sbjct: 474 VGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASN 532
Query: 477 LFSGSIPCSLSQLSGLGVLDLSYNNL 502
P L LS +++LS+N L
Sbjct: 533 NIRIIPPHLLPALSQQSIINLSHNPL 558
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 71/186 (38%), Gaps = 15/186 (8%)
Query: 323 LANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPT 382
L NR+S S N+ L LH+N L G + + L LDL NA +
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 383 WIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLV 442
L +L L L P F L ++ L L N L A+P+ +
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRG-----LAALQYLYLQDNNLQ-ALPDNTFRDL 151
Query: 443 GLIALNLSRNHLTGPITPKIGE-----LTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDL 497
G NL+ L G P + E L SLD L L +N + P + L L L L
Sbjct: 152 G----NLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYL 207
Query: 498 SYNNLS 503
NNLS
Sbjct: 208 FANNLS 213
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 134 SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLY 193
LK Y D+ + +P FGN+C+L+ L + N L Q+ +++ S ++ Y
Sbjct: 294 QLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLI-----FY 347
Query: 194 LRWNDFTGPIPHLGGF 209
LR N P+PH F
Sbjct: 348 LRDNRPEIPLPHERRF 363
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 345 LNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQ 389
L L+ N LT +LP+ ++N S LRVLDL N + +P +G Q
Sbjct: 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQ 294
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380
++L++NRL+ +++ L I+ LNL +N ++ LPS L SQ R ++L +N +
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563
Query: 381 PT-----WIGESLQNL 391
W E++Q L
Sbjct: 564 SNIYFLEWYKENMQKL 579
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 11/201 (5%)
Query: 309 PDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRV 368
P+ L +LNL +N LS + F N+ L+L +N + +P L
Sbjct: 66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125
Query: 369 LDLEKNAIFG-EIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSS 427
LDL N + ++ T + ++LS +NK + + S+L + L+LSS
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLS--NNKIQALKSEELDIFANSSL---KKLELSS 180
Query: 428 NKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIG-EL--TSLDFLDLSRNLFSGSIPC 484
N++ P + L L L+ L +T K+ EL TS+ L LS + S +
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240
Query: 485 SLSQL--SGLGVLDLSYNNLS 503
+ L + L +LDLSYNNL+
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLN 261
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 318 LFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIF 377
L L L N+L+G P++ ++I L L N++ QL+ L+L N I
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 378 GEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEY--KSTL--GLVRC 422
+P E L +L L+L SN F+ N + E+ K +L G RC
Sbjct: 116 CVMPGSF-EHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC 163
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 374 NAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA 433
+ +FG +P +L+ L LK N+ G P FE ++ L L NK+
Sbjct: 47 DGLFGRLP--------HLVKLELKRNQLTGIEPNAFEGASH-----IQELQLGENKIKEI 93
Query: 434 IPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479
+ + L L LNL N ++ + L SL L+L+ N F+
Sbjct: 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 11/201 (5%)
Query: 309 PDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRV 368
P+ L +LNL +N LS + F N+ L+L +N + +P L
Sbjct: 76 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 135
Query: 369 LDLEKNAIFG-EIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSS 427
LDL N + ++ T + ++LS +NK + + S+L + L+LSS
Sbjct: 136 LDLSHNGLSSTKLGTQVQLENLQELLLS--NNKIQALKSEELDIFANSSL---KKLELSS 190
Query: 428 NKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIG-EL--TSLDFLDLSRNLFSGSIPC 484
N++ P + L L L+ L +T K+ EL TS+ L LS + S +
Sbjct: 191 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 250
Query: 485 SLSQL--SGLGVLDLSYNNLS 503
+ L + L +LDLSYNNL+
Sbjct: 251 TFLGLKWTNLTMLDLSYNNLN 271
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 11/201 (5%)
Query: 309 PDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRV 368
P+ L +LNL +N LS + F N+ L+L +N + +P L
Sbjct: 71 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 130
Query: 369 LDLEKNAIFG-EIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSS 427
LDL N + ++ T + ++LS +NK + + S+L + L+LSS
Sbjct: 131 LDLSHNGLSSTKLGTQVQLENLQELLLS--NNKIQALKSEELDIFANSSL---KKLELSS 185
Query: 428 NKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIG-EL--TSLDFLDLSRNLFSGSIPC 484
N++ P + L L L+ L +T K+ EL TS+ L LS + S +
Sbjct: 186 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 245
Query: 485 SLSQL--SGLGVLDLSYNNLS 503
+ L + L +LDLSYNNL+
Sbjct: 246 TFLGLKWTNLTMLDLSYNNLN 266
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLT 353
D +H L IL++ NN+L + +GFL+ + L+LH N +T
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEIT 163
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 320 ILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG---KLPSPLRNFSQLRVLDLEKNAI 376
+L+L NN +S D L +++ L L NN+++ K SPLR +L + KN +
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI---SKNHL 114
Query: 377 FGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPE 436
EIP + SL L + H N + S L + C+++ N L+ + E
Sbjct: 115 V-EIPPNLPSSLVEL--------RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165
Query: 437 E-IMDLVGLIALNLSRNHLTG 456
D + L L +S LTG
Sbjct: 166 PGAFDGLKLNYLRISEAKLTG 186
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%)
Query: 415 STLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLS 474
TL ++ L+L+ NK++ E L L LNLS N L + L + ++DL
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346
Query: 475 RNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503
+N + + L L LDL N L+
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 318 LFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIF 377
L +LNLA N+++ ++ L+N+ LNL N L S ++ +DL+KN I
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI- 350
Query: 378 GEIPTWIGESLQNLIVLSLKSN 399
I + L+ L L L+ N
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDN 372
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 425 LSSNKLDGAIPEEIMD-LVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIP 483
L+ N+L ++P + D L L L L N L +LT+L +L+L+ N
Sbjct: 92 LTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150
Query: 484 CSLSQLSGLGVLDLSYNNLSGKIPSG 509
+L+ L LDLSYN L +P G
Sbjct: 151 GVFDKLTNLTELDLSYNQLQS-LPEG 175
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 464 ELTSLDFLDLSRNLFSGSIPCSLSQL--SGLGVLDLSYN 500
+L SL+FLDLSRN S CS S + L LDLS+N
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%)
Query: 420 VRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479
V+ LDLS+N++ ++ V L AL L+ N + L SL+ LDLS N S
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 480 GSIPCSLSQLSGLGVLDL 497
LS L L+L
Sbjct: 114 NLSSSWFKPLSSLTFLNL 131
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 438 IMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDL 497
+M L LNL R LT G L L LDLS N S+P L L VLD+
Sbjct: 51 LMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107
Query: 498 SYNNLS 503
S+N L+
Sbjct: 108 SFNRLT 113
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 438 IMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDL 497
+M L LNL R LT G L L LDLS N S+P L L VLD+
Sbjct: 51 LMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107
Query: 498 SYNNLS 503
S+N L+
Sbjct: 108 SFNRLT 113
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 438 IMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDL 497
+M L LNL R LT G L L LDLS N S+P L L VLD+
Sbjct: 51 LMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107
Query: 498 SYNNLS 503
S+N L+
Sbjct: 108 SFNRLT 113
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 423 LDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSI 482
L LS N L +M L LNL R LT G L L LDLS N S+
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK--LQVDGTLPVLGTLDLSHNQLQ-SL 92
Query: 483 PCSLSQLSGLGVLDLSYNNLS 503
P L L VLD+S+N L+
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT 113
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 423 LDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSI 482
L LS N L +M L LNL R LT G L L LDLS N S+
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK--LQVDGTLPVLGTLDLSHNQLQ-SL 92
Query: 483 PCSLSQLSGLGVLDLSYNNLS 503
P L L VLD+S+N L+
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT 113
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 438 IMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDL 497
+M L LNL R LT G L L LDLS N S+P L L VLD+
Sbjct: 51 LMPYTRLTQLNLDRCELTK--LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107
Query: 498 SYNNLS 503
S+N L+
Sbjct: 108 SFNRLT 113
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 438 IMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDL 497
+M L LNL R LT G L L LDLS N S+P L L VLD+
Sbjct: 51 LMPYTRLTQLNLDRCELTK--LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107
Query: 498 SYNNLS 503
S+N L+
Sbjct: 108 SFNRLT 113
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 443 GLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSG 480
L ALN+ N+LT P++ + SL FLD+S N+FSG
Sbjct: 258 SLEALNVRDNYLTD--LPELPQ--SLTFLDVSENIFSG 291
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%)
Query: 420 VRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479
V+ LDLS+N++ ++ V L AL L+ N + L SL+ LDLS N S
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 480 GSIPCSLSQLSGLGVLDL 497
LS L L+L
Sbjct: 88 NLSSSWFKPLSSLTFLNL 105
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 438 IMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDL 497
+M L LNL R LT G L L LDLS N S+P L L VLD+
Sbjct: 51 LMPYTRLTQLNLDRCELTK--LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107
Query: 498 SYNNLS 503
S+N L+
Sbjct: 108 SFNRLT 113
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 438 IMDLVGLIALNLSRNHLTGPITPKI---GELTSLDFLDLSRNLFSGSIPCSLSQLSGLGV 494
+M L LNL R LT K+ G L L LDLS N S+P L L V
Sbjct: 52 LMPYTRLTQLNLDRCELT-----KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTV 105
Query: 495 LDLSYNNLS 503
LD+S+N L+
Sbjct: 106 LDVSFNRLT 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,276,662
Number of Sequences: 62578
Number of extensions: 604396
Number of successful extensions: 1724
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1304
Number of HSP's gapped (non-prelim): 339
length of query: 622
length of database: 14,973,337
effective HSP length: 105
effective length of query: 517
effective length of database: 8,402,647
effective search space: 4344168499
effective search space used: 4344168499
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)