Query 037539
Match_columns 622
No_of_seqs 533 out of 4406
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 13:16:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-57 4.7E-62 525.4 36.7 497 3-530 92-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1E-53 2.2E-58 494.8 34.9 493 4-530 69-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.5E-41 5.5E-46 333.2 11.1 435 78-557 55-499 (873)
4 KOG4194 Membrane glycoprotein 100.0 9.9E-40 2.2E-44 322.0 7.5 385 36-478 55-451 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 3E-38 6.5E-43 298.6 -9.5 420 33-503 45-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1E-37 2.2E-42 295.0 -9.5 430 49-526 45-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.3E-34 2.7E-39 300.9 -2.2 429 35-526 23-489 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 4.2E-34 9.2E-39 284.1 -1.6 361 31-479 5-375 (1255)
9 KOG0444 Cytoskeletal regulator 100.0 4.8E-34 1E-38 283.7 -1.3 363 102-505 7-377 (1255)
10 KOG0618 Serine/threonine phosp 100.0 9E-32 2E-36 279.7 0.6 416 34-501 46-487 (1081)
11 PLN03210 Resistant to P. syrin 99.9 5.7E-24 1.2E-28 247.0 25.8 338 70-477 553-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.5E-22 3.3E-27 235.1 25.8 340 96-503 553-906 (1153)
13 KOG4237 Extracellular matrix p 99.9 1.5E-25 3.3E-30 212.5 -2.5 381 99-500 64-498 (498)
14 KOG4237 Extracellular matrix p 99.9 7.1E-24 1.5E-28 201.3 -2.5 282 189-509 69-365 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 7.5E-21 1.6E-25 205.2 17.2 199 274-508 263-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 8.8E-21 1.9E-25 204.7 17.4 264 134-486 202-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 8.4E-19 1.8E-23 190.8 13.8 180 186-402 177-359 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.8E-18 3.9E-23 188.2 15.2 143 274-431 284-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 1E-19 2.2E-24 184.3 2.6 59 106-170 2-64 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 2.5E-19 5.4E-24 181.4 3.3 185 317-502 109-319 (319)
21 KOG0617 Ras suppressor protein 99.6 1.4E-17 3.1E-22 140.7 -4.3 156 314-503 31-186 (264)
22 KOG0617 Ras suppressor protein 99.6 1E-17 2.3E-22 141.5 -5.4 152 293-455 34-186 (264)
23 PLN03150 hypothetical protein; 99.5 1.4E-13 3E-18 149.7 10.4 117 419-535 419-537 (623)
24 KOG1909 Ran GTPase-activating 99.4 6.4E-14 1.4E-18 132.4 -0.8 140 315-454 156-310 (382)
25 KOG1909 Ran GTPase-activating 99.3 7.9E-13 1.7E-17 125.1 2.1 241 29-286 26-311 (382)
26 KOG1259 Nischarin, modulator o 99.2 1.7E-12 3.6E-17 120.1 1.6 132 362-505 282-414 (490)
27 COG4886 Leucine-rich repeat (L 99.2 2.5E-11 5.4E-16 126.4 8.3 183 313-509 113-296 (394)
28 KOG3207 Beta-tubulin folding c 99.2 4E-12 8.7E-17 123.7 1.5 211 49-287 121-340 (505)
29 KOG0532 Leucine-rich repeat (L 99.2 8.6E-13 1.9E-17 132.1 -4.1 169 320-503 79-247 (722)
30 PLN03150 hypothetical protein; 99.2 1.7E-10 3.6E-15 125.8 12.8 114 390-508 419-533 (623)
31 KOG1259 Nischarin, modulator o 99.2 1.2E-11 2.6E-16 114.4 2.5 131 314-480 282-413 (490)
32 KOG3207 Beta-tubulin folding c 99.2 6.9E-12 1.5E-16 122.0 0.7 208 293-505 122-341 (505)
33 PF14580 LRR_9: Leucine-rich r 99.1 2.2E-11 4.8E-16 108.5 3.6 84 72-170 16-101 (175)
34 COG4886 Leucine-rich repeat (L 99.1 8.3E-11 1.8E-15 122.5 7.3 58 189-247 118-176 (394)
35 PF14580 LRR_9: Leucine-rich r 99.1 1.6E-10 3.5E-15 103.0 7.7 127 314-449 17-147 (175)
36 KOG0532 Leucine-rich repeat (L 99.1 2.4E-12 5.2E-17 129.0 -4.8 189 274-477 76-271 (722)
37 KOG0531 Protein phosphatase 1, 98.9 2.2E-10 4.8E-15 119.5 -0.3 174 318-507 142-322 (414)
38 KOG0531 Protein phosphatase 1, 98.9 1.8E-10 3.8E-15 120.2 -2.0 57 342-402 234-290 (414)
39 KOG4658 Apoptotic ATPase [Sign 98.9 2.7E-09 5.8E-14 118.9 6.8 149 74-241 522-675 (889)
40 PF13855 LRR_8: Leucine rich r 98.8 1.6E-09 3.6E-14 79.2 2.5 60 443-502 2-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.8 7.9E-09 1.7E-13 115.2 8.4 129 102-245 523-653 (889)
42 PF13855 LRR_8: Leucine rich r 98.8 3.2E-09 6.8E-14 77.7 2.4 61 418-478 1-61 (61)
43 COG5238 RNA1 Ran GTPase-activa 98.7 6.9E-09 1.5E-13 95.2 1.8 246 31-286 28-316 (388)
44 KOG2120 SCF ubiquitin ligase, 98.6 1.7E-09 3.8E-14 100.3 -4.5 159 293-453 186-349 (419)
45 KOG2120 SCF ubiquitin ligase, 98.6 2.9E-09 6.3E-14 98.9 -3.3 179 317-500 186-373 (419)
46 KOG1859 Leucine-rich repeat pr 98.6 2.8E-09 6.2E-14 110.2 -3.9 179 309-504 102-293 (1096)
47 KOG1859 Leucine-rich repeat pr 98.4 1.7E-08 3.6E-13 104.7 -2.7 181 333-529 102-295 (1096)
48 COG5238 RNA1 Ran GTPase-activa 98.4 7.7E-08 1.7E-12 88.4 1.3 238 4-248 30-317 (388)
49 KOG2982 Uncharacterized conser 98.4 1.7E-07 3.8E-12 87.3 3.1 186 309-498 90-287 (418)
50 KOG2982 Uncharacterized conser 98.3 2.2E-07 4.8E-12 86.6 1.1 85 49-143 71-156 (418)
51 KOG4341 F-box protein containi 98.3 4.1E-08 9E-13 95.7 -4.4 36 339-374 400-436 (483)
52 KOG4579 Leucine-rich repeat (L 98.2 1.1E-07 2.4E-12 78.3 -1.7 90 417-509 52-141 (177)
53 KOG1644 U2-associated snRNP A' 98.2 2.1E-06 4.5E-11 75.9 5.9 121 35-168 21-151 (233)
54 KOG4579 Leucine-rich repeat (L 98.2 1.5E-07 3.2E-12 77.6 -1.6 90 417-509 76-165 (177)
55 KOG1644 U2-associated snRNP A' 98.0 8E-06 1.7E-10 72.3 5.8 60 102-170 42-101 (233)
56 KOG4341 F-box protein containi 98.0 4E-07 8.7E-12 88.9 -3.5 132 314-449 318-459 (483)
57 PRK15386 type III secretion pr 98.0 6E-05 1.3E-09 75.9 11.4 139 70-245 47-188 (426)
58 KOG3665 ZYG-1-like serine/thre 98.0 3.8E-06 8.2E-11 91.7 2.8 134 32-177 121-270 (699)
59 PRK15386 type III secretion pr 97.8 6E-05 1.3E-09 75.9 8.2 136 313-476 49-187 (426)
60 PF12799 LRR_4: Leucine Rich r 97.8 2.5E-05 5.3E-10 52.2 3.3 38 133-171 1-38 (44)
61 KOG3665 ZYG-1-like serine/thre 97.8 2.5E-05 5.4E-10 85.4 4.9 135 364-504 122-264 (699)
62 PF12799 LRR_4: Leucine Rich r 97.7 2.6E-05 5.6E-10 52.1 3.0 36 443-479 2-37 (44)
63 KOG2123 Uncharacterized conser 97.5 7.5E-06 1.6E-10 75.9 -2.9 105 315-424 18-123 (388)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00062 1.4E-08 58.3 7.5 86 310-399 6-91 (129)
65 PF13306 LRR_5: Leucine rich r 97.3 0.00062 1.3E-08 58.3 6.2 62 334-398 6-67 (129)
66 KOG2739 Leucine-rich acidic nu 97.2 0.00032 7E-09 65.1 4.1 89 310-402 37-129 (260)
67 KOG2123 Uncharacterized conser 97.2 1.3E-05 2.8E-10 74.4 -5.3 99 132-240 18-123 (388)
68 KOG2739 Leucine-rich acidic nu 97.0 0.00044 9.5E-09 64.3 2.4 82 189-282 67-152 (260)
69 KOG4308 LRR-containing protein 96.4 4.9E-05 1.1E-09 79.5 -8.9 186 35-224 89-304 (478)
70 KOG4308 LRR-containing protein 96.4 3.1E-05 6.7E-10 81.0 -10.8 191 51-247 89-303 (478)
71 KOG1947 Leucine rich repeat pr 96.3 0.0011 2.4E-08 71.2 0.3 64 338-401 241-307 (482)
72 KOG1947 Leucine rich repeat pr 95.8 0.0015 3.2E-08 70.1 -1.9 134 314-451 186-330 (482)
73 KOG3864 Uncharacterized conser 94.5 0.0042 9E-08 55.6 -2.4 60 49-112 101-161 (221)
74 PF00560 LRR_1: Leucine Rich R 94.3 0.015 3.3E-07 32.1 0.4 11 469-479 3-13 (22)
75 PF00560 LRR_1: Leucine Rich R 93.9 0.025 5.5E-07 31.2 0.8 12 444-455 2-13 (22)
76 KOG3864 Uncharacterized conser 93.3 0.014 3.1E-07 52.3 -1.4 83 420-502 103-188 (221)
77 PF13504 LRR_7: Leucine rich r 90.7 0.17 3.6E-06 25.9 1.3 11 366-376 3-13 (17)
78 smart00369 LRR_TYP Leucine-ric 89.8 0.31 6.7E-06 28.0 2.2 21 364-385 2-22 (26)
79 smart00370 LRR Leucine-rich re 89.8 0.31 6.7E-06 28.0 2.2 21 364-385 2-22 (26)
80 smart00370 LRR Leucine-rich re 88.4 0.39 8.5E-06 27.6 1.9 14 466-479 2-15 (26)
81 smart00369 LRR_TYP Leucine-ric 88.4 0.39 8.5E-06 27.6 1.9 14 466-479 2-15 (26)
82 TIGR00864 PCC polycystin catio 87.5 0.43 9.4E-06 59.1 3.3 74 472-550 1-74 (2740)
83 KOG4242 Predicted myosin-I-bin 87.1 1.8 3.9E-05 44.3 6.8 63 103-169 215-280 (553)
84 PF13516 LRR_6: Leucine Rich r 86.2 0.33 7.1E-06 27.3 0.7 13 419-431 3-15 (24)
85 KOG4242 Predicted myosin-I-bin 86.1 3.8 8.1E-05 42.1 8.4 207 31-244 163-390 (553)
86 KOG0473 Leucine-rich repeat pr 85.5 0.039 8.4E-07 50.5 -5.1 85 387-479 40-124 (326)
87 KOG0473 Leucine-rich repeat pr 81.0 0.12 2.7E-06 47.4 -3.8 87 360-455 38-124 (326)
88 smart00365 LRR_SD22 Leucine-ri 73.5 3.1 6.6E-05 24.0 1.8 16 33-48 2-17 (26)
89 smart00364 LRR_BAC Leucine-ric 65.9 4.5 9.7E-05 23.3 1.4 18 490-508 2-19 (26)
90 KOG3763 mRNA export factor TAP 65.9 2.9 6.4E-05 43.7 1.2 70 72-147 215-284 (585)
91 smart00368 LRR_RI Leucine rich 65.6 4 8.7E-05 23.9 1.3 12 365-376 3-14 (28)
92 KOG3763 mRNA export factor TAP 63.9 4.7 0.0001 42.3 2.2 15 315-329 217-231 (585)
93 PF04478 Mid2: Mid2 like cell 45.8 15 0.00034 31.5 2.1 10 565-574 54-63 (154)
94 PTZ00382 Variant-specific surf 38.4 9.7 0.00021 30.3 -0.2 14 564-577 66-79 (96)
95 smart00367 LRR_CC Leucine-rich 37.7 22 0.00048 20.2 1.3 11 102-112 2-12 (26)
96 PF15102 TMEM154: TMEM154 prot 35.8 40 0.00086 28.9 3.0 22 571-592 66-87 (146)
97 PF01102 Glycophorin_A: Glycop 35.7 10 0.00022 31.6 -0.5 22 565-586 65-86 (122)
98 PF01299 Lamp: Lysosome-associ 33.6 27 0.0006 34.7 2.1 8 567-574 273-280 (306)
99 PF08374 Protocadherin: Protoc 32.0 16 0.00035 33.3 0.1 27 564-590 38-64 (221)
100 PF11770 GAPT: GRB2-binding ad 30.3 22 0.00048 30.3 0.7 13 578-590 24-36 (158)
101 PF04478 Mid2: Mid2 like cell 28.4 56 0.0012 28.2 2.8 36 564-599 49-84 (154)
102 PF12191 stn_TNFRSF12A: Tumour 21.0 59 0.0013 27.0 1.4 23 572-594 87-109 (129)
103 PF05808 Podoplanin: Podoplani 20.9 33 0.00071 29.9 0.0 31 564-594 129-160 (162)
104 TIGR00864 PCC polycystin catio 20.1 61 0.0013 41.6 2.0 32 424-455 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-57 Score=525.40 Aligned_cols=497 Identities=33% Similarity=0.447 Sum_probs=424.6
Q ss_pred ccccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCC------CCCccEEEcCCcccCCC-CcchHhhcCCC
Q 037539 3 YKHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFE------TSNINTFFLNTVSVTKS-SDWFQVVAKLH 75 (622)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~------~~~L~~L~Ls~n~l~~~-~~~~~~l~~l~ 75 (622)
+++++.|+++++.+.+.+|..+. ..+++|++|++++|.+++ +++|++|++++|.+++. +. .+.+++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~----~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~---~~~~l~ 164 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIF----TTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPN---DIGSFS 164 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHh----ccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCCh---HHhcCC
Confidence 56677778887777556665533 367888888888888764 38888888888888766 66 788889
Q ss_pred CCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcC
Q 037539 76 SLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGN 155 (622)
Q Consensus 76 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 155 (622)
+|++|++++|.+.+..| ..+.++ ++|++|++++|.+.+ .+|..+ +.+++|++|++++|.+.+.+|..++.
T Consensus 165 ~L~~L~L~~n~l~~~~p--~~~~~l-~~L~~L~L~~n~l~~-~~p~~l------~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIP--NSLTNL-TSLEFLTLASNQLVG-QIPREL------GQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred CCCEEECccCcccccCC--hhhhhC-cCCCeeeccCCCCcC-cCChHH------cCcCCccEEECcCCccCCcCChhHhc
Confidence 99999999998888777 678888 889999999998876 666655 67888889999988888888888888
Q ss_pred CccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCC
Q 037539 156 MCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLS 234 (622)
Q Consensus 156 l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 234 (622)
+++|++|++++|.+.+..|..+.++ ++ |++|++++|.+.+..|. +..+++|++|++++|.+.+.+|..+.+++
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l-----~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNL-----KN-LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCC-----CC-CCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 8899999999888888888874444 44 88888888888877776 88888888888888888888888888888
Q ss_pred CCCEEEccCCCCcccccccc----------cCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC-----cccEEeC
Q 037539 235 KLESLSLDGNSLRAISLCIL----------TSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL-----SLRFDDL 299 (622)
Q Consensus 235 ~L~~L~l~~n~l~~~~~~~~----------~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-----~L~~L~l 299 (622)
+|++|++++|.+++.....+ ++.+.+.+.+|..+... ++|+.|++++|++.+..|.. .++.+++
T Consensus 309 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 88888888888775442211 56677777888877654 58899999999888777652 6888999
Q ss_pred CCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCccccc
Q 037539 300 SSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGE 379 (622)
Q Consensus 300 s~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~ 379 (622)
++|.+.+..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467 (968)
T ss_pred cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence 99999888888899999999999999999988888899999999999999999988888888899999999999998888
Q ss_pred CchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCc
Q 037539 380 IPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPIT 459 (622)
Q Consensus 380 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 459 (622)
+|... ..++|+.|++++|++.+..|..+. .+++|+.|++++|.+.+.+|+.+..+++|++|+|++|.+++.+|
T Consensus 468 ~p~~~--~~~~L~~L~ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 468 LPDSF--GSKRLENLDLSRNQFSGAVPRKLG-----SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred cCccc--ccccceEEECcCCccCCccChhhh-----hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence 87765 368999999999999988887776 78999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCCCCCC
Q 037539 460 PKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 460 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 530 (622)
..+..+++|+.|+|++|++++.+|..+..+++|+.|++++|++.+.+|..+++.++....+.||+.+|+.+
T Consensus 541 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-53 Score=494.80 Aligned_cols=493 Identities=33% Similarity=0.450 Sum_probs=431.0
Q ss_pred cccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCC---------CCCccEEEcCCcccCCC-CcchHhhcC
Q 037539 4 KHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFE---------TSNINTFFLNTVSVTKS-SDWFQVVAK 73 (622)
Q Consensus 4 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~---------~~~L~~L~Ls~n~l~~~-~~~~~~l~~ 73 (622)
.++.+++++++++.+.++..+. .+++|++|+|++|.+++ +++|++|++++|.+++. |. ..
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~-----~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-----~~ 138 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIF-----RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-----GS 138 (968)
T ss_pred CcEEEEEecCCCccccCChHHh-----CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-----cc
Confidence 3566788887776555544444 79999999999998863 38999999999999877 43 46
Q ss_pred CCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhh
Q 037539 74 LHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFF 153 (622)
Q Consensus 74 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 153 (622)
+++|++|+|++|.+.+..| ..+..+ ++|++|++++|.+.+ .+|..+ +++++|++|++++|.+.+..|..+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p--~~~~~l-~~L~~L~L~~n~l~~-~~p~~~------~~l~~L~~L~L~~n~l~~~~p~~l 208 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIP--NDIGSF-SSLKVLDLGGNVLVG-KIPNSL------TNLTSLEFLTLASNQLVGQIPREL 208 (968)
T ss_pred cCCCCEEECcCCcccccCC--hHHhcC-CCCCEEECccCcccc-cCChhh------hhCcCCCeeeccCCCCcCcCChHH
Confidence 8999999999999998888 788888 999999999999987 677665 788999999999999999999999
Q ss_pred cCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCC
Q 037539 154 GNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQ 232 (622)
Q Consensus 154 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~ 232 (622)
+.+++|+.|++++|.+.+..|..+..+ + +|++|++++|.+.+..|. ++++++|++|++++|.+.+..|..+..
T Consensus 209 ~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 282 (968)
T PLN00113 209 GQMKSLKWIYLGYNNLSGEIPYEIGGL-----T-SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282 (968)
T ss_pred cCcCCccEEECcCCccCCcCChhHhcC-----C-CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh
Confidence 999999999999999999999885554 4 499999999999988887 999999999999999999899999999
Q ss_pred CCCCCEEEccCCCCcccccccc----------cCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC-----cccEE
Q 037539 233 LSKLESLSLDGNSLRAISLCIL----------TSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL-----SLRFD 297 (622)
Q Consensus 233 l~~L~~L~l~~n~l~~~~~~~~----------~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-----~L~~L 297 (622)
+++|++|++++|.+.+.....+ ++.|.+.+.+|..+... ++|+.|++++|.+.+..|.. +|+.|
T Consensus 283 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 361 (968)
T PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361 (968)
T ss_pred ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence 9999999999999876532211 56777788888777654 68999999999988777752 78899
Q ss_pred eCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCccc
Q 037539 298 DLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIF 377 (622)
Q Consensus 298 ~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~ 377 (622)
++++|.+.+..|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.
T Consensus 362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441 (968)
T ss_pred ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCccc
Confidence 99999998888888888899999999999998888888889999999999999999888889999999999999999998
Q ss_pred ccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCC
Q 037539 378 GEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGP 457 (622)
Q Consensus 378 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 457 (622)
+.+|.... .+++|+.|++++|++.+..|..+ ..++|+.|++++|++.+..|..+.++++|+.|++++|.+.+.
T Consensus 442 ~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 514 (968)
T PLN00113 442 GRINSRKW-DMPSLQMLSLARNKFFGGLPDSF------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE 514 (968)
T ss_pred CccChhhc-cCCCCcEEECcCceeeeecCccc------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceee
Confidence 87877666 68999999999999998888765 468999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcCCCCCC
Q 037539 458 ITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 458 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 530 (622)
+|+.+.++++|++|+|++|.+++.+|..+..+++|++|++++|++++.+|.. ..+..+..+.+.+|+..+..|
T Consensus 515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 9999999999999999999999999999999999999999999999999975 446677888888888766444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-41 Score=333.21 Aligned_cols=435 Identities=23% Similarity=0.230 Sum_probs=257.2
Q ss_pred CEEEccCCCCCCCCCCcchh-ccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCC
Q 037539 78 KSLVLFSCALPPVNPSFIWH-FNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNM 156 (622)
Q Consensus 78 ~~L~Ls~n~l~~~~~~~~~l-~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 156 (622)
..||.+.+.+..... ..+ +-+++.-+.||+++|++.+ .+...|.++++|+.+++.+|.++ .+|..-+..
T Consensus 55 ~lldcs~~~lea~~~--~~l~g~lp~~t~~LdlsnNkl~~-------id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~s 124 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDK--SRLKGFLPSQTQTLDLSNNKLSH-------IDFEFFYNLPNLQEVNLNKNELT-RIPRFGHES 124 (873)
T ss_pred eeeecCccccccccc--cccCCcCccceeeeecccccccc-------CcHHHHhcCCcceeeeeccchhh-hcccccccc
Confidence 345555555543221 111 1233455667777777776 22233467777777777777777 566655556
Q ss_pred ccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCC
Q 037539 157 CSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSK 235 (622)
Q Consensus 157 ~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 235 (622)
.+|+.|+|.+|.|+......++.+ +. |++|||+.|.++..... |..-.++++|+|++|.|+......|..+.+
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l-----~a-lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSAL-----PA-LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred cceeEEeeeccccccccHHHHHhH-----hh-hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccch
Confidence 667777777777776666664433 33 77777777777754444 666677777777777777777777777777
Q ss_pred CCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCccc----CCCC-cccEEeCCCCcCccccCc
Q 037539 236 LESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGK----LPDL-SLRFDDLSSNLLSGGLPD 310 (622)
Q Consensus 236 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~-~L~~L~ls~n~l~~~~~~ 310 (622)
|.+|.|+.|+++ .+|...|+.+++|+.|++..|++.-. +..+ +++.|.+..|.+...-..
T Consensus 199 L~tlkLsrNrit---------------tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG 263 (873)
T KOG4194|consen 199 LLTLKLSRNRIT---------------TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG 263 (873)
T ss_pred heeeecccCccc---------------ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc
Confidence 777777777776 56666677666777777777766511 0011 344444555555545555
Q ss_pred cccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhccc
Q 037539 311 CWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQN 390 (622)
Q Consensus 311 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 390 (622)
.|..+.++++|+|+.|++......++.++.+|+.|++|+|.|....++....+++|++|+|++|.| ..++..-+..+..
T Consensus 264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i-~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI-TRLDEGSFRVLSQ 342 (873)
T ss_pred ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc-ccCChhHHHHHHH
Confidence 566666666666666666655555566666666666666666655566666666666666666666 4555554545666
Q ss_pred ccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccc---hHHhhcccccceeecCCccccCCCccccCCCCC
Q 037539 391 LIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAI---PEEIMDLVGLIALNLSRNHLTGPITPKIGELTS 467 (622)
Q Consensus 391 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 467 (622)
|++|+|++|.+... ....+..+++|++|||++|.+...+ ...|..+++|+.|++.+|++......+|.++++
T Consensus 343 Le~LnLs~Nsi~~l-----~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~ 417 (873)
T KOG4194|consen 343 LEELNLSHNSIDHL-----AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEA 417 (873)
T ss_pred hhhhcccccchHHH-----HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcc
Confidence 66666666666522 2222225666666666666665433 234555666666666666666444455666666
Q ss_pred CCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 037539 468 LDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCLDEESTPGPGTD 547 (622)
Q Consensus 468 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~C~~~~~~~~~~~~ 547 (622)
|++|||.+|.|..+-|++|..+ .|++|-+..-.+.|. +++..+..+.+..++. ......|..|+...+....
T Consensus 418 LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCD----Cql~Wl~qWl~~~~lq---~sv~a~CayPe~Lad~~i~ 489 (873)
T KOG4194|consen 418 LEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCD----CQLKWLAQWLYRRKLQ---SSVIAKCAYPEPLADQSIV 489 (873)
T ss_pred cceecCCCCcceeecccccccc-hhhhhhhcccceEEe----ccHHHHHHHHHhcccc---cceeeeccCCcccccceeE
Confidence 6666666666666666666665 566666555555544 2333333222222211 1112468888877766554
Q ss_pred CCCCCccCcc
Q 037539 548 DDSDTLEDED 557 (622)
Q Consensus 548 ~~~~~~~~~~ 557 (622)
..+.....|+
T Consensus 490 svd~~~lvC~ 499 (873)
T KOG4194|consen 490 SVDTANLVCD 499 (873)
T ss_pred eechhhceec
Confidence 4444343343
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-40 Score=321.97 Aligned_cols=385 Identities=23% Similarity=0.234 Sum_probs=297.8
Q ss_pred cEEeCCCCCCCCC----------CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcc
Q 037539 36 QELVLGLGKFFET----------SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSI 104 (622)
Q Consensus 36 ~~L~L~~n~i~~~----------~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L 104 (622)
+.||.+++.+... +.-+.|++++|.+... +. .|.++++|+.+++..|.++.. | .+.....+|
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~---~f~nl~nLq~v~l~~N~Lt~I-P---~f~~~sghl 127 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFE---FFYNLPNLQEVNLNKNELTRI-P---RFGHESGHL 127 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHH---HHhcCCcceeeeeccchhhhc-c---cccccccce
Confidence 4567777766442 5566788888877777 55 677788888888888777654 3 233332667
Q ss_pred cEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccc
Q 037539 105 ETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGC 184 (622)
Q Consensus 105 ~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~ 184 (622)
+.|+|.+|.|+. .....++.++.|+.|||+.|.|+.+....|..-.++++|+|++|.|+......|..+.
T Consensus 128 ~~L~L~~N~I~s-------v~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln--- 197 (873)
T KOG4194|consen 128 EKLDLRHNLISS-------VTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN--- 197 (873)
T ss_pred eEEeeecccccc-------ccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccc---
Confidence 888888887775 2233446677788888888877755555666667788888888887776666644443
Q ss_pred cCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccC
Q 037539 185 VVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDS 263 (622)
Q Consensus 185 ~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~ 263 (622)
+|..|.|+.|.++...+. |.++++|+.|+|..|.|.-.-...|.++++|+.|.+..|+|. .
T Consensus 198 ---sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~---------------k 259 (873)
T KOG4194|consen 198 ---SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS---------------K 259 (873)
T ss_pred ---hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc---------------c
Confidence 477788888877755555 777888888888888776444557777778888888777776 4
Q ss_pred CchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCcc
Q 037539 264 IPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIW 343 (622)
Q Consensus 264 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 343 (622)
+.++.|..+.++++|+++.|+++ ..-...+.+++.|+.|++++|.|....++.....++|+
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~-------------------~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQ-------------------AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK 320 (873)
T ss_pred ccCcceeeecccceeecccchhh-------------------hhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence 45555555566777766666655 34456778999999999999999988888888899999
Q ss_pred EEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEE
Q 037539 344 TLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCL 423 (622)
Q Consensus 344 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L 423 (622)
+|+|++|+++...++.|..+..|++|+|++|.+ ..+.++.|.++.+|++|||++|.+...+-+ ....+.++++|+.|
T Consensus 321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi-~~l~e~af~~lssL~~LdLr~N~ls~~IED--aa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI-DHLAEGAFVGLSSLHKLDLRSNELSWCIED--AAVAFNGLPSLRKL 397 (873)
T ss_pred eEeccccccccCChhHHHHHHHhhhhcccccch-HHHHhhHHHHhhhhhhhcCcCCeEEEEEec--chhhhccchhhhhe
Confidence 999999999988899999999999999999999 788888888999999999999999876654 33344579999999
Q ss_pred ECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCcc
Q 037539 424 DLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLF 478 (622)
Q Consensus 424 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 478 (622)
++.||++..+.-.+|.++++|+.|||.+|.+...-|++|..+ .|+.|.+..-.+
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 999999997777899999999999999999998889999999 999998865443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3e-38 Score=298.65 Aligned_cols=420 Identities=25% Similarity=0.307 Sum_probs=260.7
Q ss_pred cCCcEEeCCCCCCCCC-------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCccc
Q 037539 33 ERLQELVLGLGKFFET-------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIE 105 (622)
Q Consensus 33 ~~L~~L~L~~n~i~~~-------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~ 105 (622)
..++.+++++|.+... ..|..|++++|.++..|. +++.+..++.++.++|++... | ..+... .+|+
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~---aig~l~~l~~l~vs~n~ls~l-p--~~i~s~-~~l~ 117 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPA---AIGELEALKSLNVSHNKLSEL-P--EQIGSL-ISLV 117 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCH---HHHHHHHHHHhhcccchHhhc-c--HHHhhh-hhhh
Confidence 4566667777765333 666667777777666655 666666777777777766543 3 355666 6677
Q ss_pred EEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhcccccc
Q 037539 106 TLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCV 185 (622)
Q Consensus 106 ~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~ 185 (622)
.++.++|.+. .+|+.+ +.+..|..++..+|+++ ..|+++..+.+|..+++.+|+++...|..+. +.
T Consensus 118 ~l~~s~n~~~--el~~~i------~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~---- 183 (565)
T KOG0472|consen 118 KLDCSSNELK--ELPDSI------GRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MK---- 183 (565)
T ss_pred hhhcccccee--ecCchH------HHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HH----
Confidence 7777777665 444444 45566666666666666 5566666666666777777766655554432 22
Q ss_pred CCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCc
Q 037539 186 VNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIP 265 (622)
Q Consensus 186 ~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~ 265 (622)
.|++||...|.+...+|.++.+.+|+.|++..|++. ..| .|.++..|++|.++.|+|+ .+|
T Consensus 184 --~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~---------------~lp 244 (565)
T KOG0472|consen 184 --RLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE---------------MLP 244 (565)
T ss_pred --HHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH---------------hhH
Confidence 366666666666544444666666666666666665 344 5666666666666666665 456
Q ss_pred hhHHhcCCCCcEEEccCCcCcccCCCC----cccEEeCCCCcCccccCccccCCCCCCEEEccCCccccc----------
Q 037539 266 DWFWDLSNKLSYLNLSNNHFRGKLPDL----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGK---------- 331 (622)
Q Consensus 266 ~~~~~~~~~L~~L~l~~n~l~~~~~~~----~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~---------- 331 (622)
+...+.++++..||+++|++......+ +++.||+|+|.++ ..|..++++ .|+.|-+.+|.+...
T Consensus 245 ae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~ 322 (565)
T KOG0472|consen 245 AEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQ 322 (565)
T ss_pred HHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHH
Confidence 666555566666666666666333222 4666666666666 345556666 666666666653200
Q ss_pred ----------------------------CCC---ccCCCCCccEEeeeCCcCCCCCCccccCC--CCccEEEccCCcc--
Q 037539 332 ----------------------------IPD---SMGFLNNIWTLNLHNNRLTGKLPSPLRNF--SQLRVLDLEKNAI-- 376 (622)
Q Consensus 332 ----------------------------~~~---~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l--~~L~~L~L~~n~i-- 376 (622)
.+. ......+.+.|++++-+++....+.|..- .-.+..+++.|++
T Consensus 323 ~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e 402 (565)
T KOG0472|consen 323 EVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE 402 (565)
T ss_pred HHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhh
Confidence 000 01112345555555555552222222111 1134444444444
Q ss_pred ---------------------cccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccch
Q 037539 377 ---------------------FGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIP 435 (622)
Q Consensus 377 ---------------------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 435 (622)
.+-+|..+. .+++|..|++++|.+. .+|..+. .+..|+.||++.|++. .+|
T Consensus 403 lPk~L~~lkelvT~l~lsnn~isfv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~-----~lv~Lq~LnlS~NrFr-~lP 474 (565)
T KOG0472|consen 403 LPKRLVELKELVTDLVLSNNKISFVPLELS-QLQKLTFLDLSNNLLN-DLPEEMG-----SLVRLQTLNLSFNRFR-MLP 474 (565)
T ss_pred hhhhhHHHHHHHHHHHhhcCccccchHHHH-hhhcceeeecccchhh-hcchhhh-----hhhhhheecccccccc-cch
Confidence 144444444 5777888888877765 5555544 5666888888888777 777
Q ss_pred HHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCc
Q 037539 436 EEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 436 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
..+..+..++++-.++|++....++.+.++.+|.+|||.+|.+. .+|..++++.+|++|+++||+|.
T Consensus 475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 77777777777777778887667777888888888888888887 67777888888888888888887
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1e-37 Score=295.01 Aligned_cols=430 Identities=26% Similarity=0.310 Sum_probs=354.9
Q ss_pred CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccc
Q 037539 49 SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKA 128 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 128 (622)
..++.+++++|.++...+ .+.++..|.+|++.+|++....| ++..+ ..++.++.++|++. .+|+.+
T Consensus 45 v~l~~lils~N~l~~l~~---dl~nL~~l~vl~~~~n~l~~lp~---aig~l-~~l~~l~vs~n~ls--~lp~~i----- 110 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLRE---DLKNLACLTVLNVHDNKLSQLPA---AIGEL-EALKSLNVSHNKLS--ELPEQI----- 110 (565)
T ss_pred cchhhhhhccCchhhccH---hhhcccceeEEEeccchhhhCCH---HHHHH-HHHHHhhcccchHh--hccHHH-----
Confidence 789999999999998843 69999999999999999987655 78888 99999999999998 688777
Q ss_pred cCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCC
Q 037539 129 FQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGG 208 (622)
Q Consensus 129 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~ 208 (622)
..+.+|++++.++|.+. ..|+.++.+..|+.++..+|+++. .|..+..+. +|..+++.+|++....+..-+
T Consensus 111 -~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~------~l~~l~~~~n~l~~l~~~~i~ 181 (565)
T KOG0472|consen 111 -GSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLS------KLSKLDLEGNKLKALPENHIA 181 (565)
T ss_pred -hhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHH------HHHHhhccccchhhCCHHHHH
Confidence 67899999999999998 788889999999999999999985 555544443 499999999999987777444
Q ss_pred CCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCccc
Q 037539 209 FSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGK 288 (622)
Q Consensus 209 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 288 (622)
++.|++||...|-+. .+|..++.+.+|..|++..|++. .+| .|. .+..|+++++..|++...
T Consensus 182 m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~---------------~lP-ef~-gcs~L~Elh~g~N~i~~l 243 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR---------------FLP-EFP-GCSLLKELHVGENQIEML 243 (565)
T ss_pred HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc---------------cCC-CCC-ccHHHHHHHhcccHHHhh
Confidence 999999999999887 67889999999999999999998 445 222 235899999999998733
Q ss_pred CCC----C-cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCC---------
Q 037539 289 LPD----L-SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG--------- 354 (622)
Q Consensus 289 ~~~----~-~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--------- 354 (622)
... + .+..||+..|.+. ..|..+.-+++|++||+++|.|+ ..|..++++ .|+.|-+.+|.+..
T Consensus 244 pae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~g 320 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKG 320 (565)
T ss_pred HHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHccc
Confidence 222 2 7899999999998 77888999999999999999999 667789999 99999999997530
Q ss_pred -----------------------------CCCc---cccCCCCccEEEccCCcccccCchhHHhhcc--cccEeecCCCc
Q 037539 355 -----------------------------KLPS---PLRNFSQLRVLDLEKNAIFGEIPTWIGESLQ--NLIVLSLKSNK 400 (622)
Q Consensus 355 -----------------------------~~~~---~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~--~L~~L~L~~n~ 400 (622)
..+. ....+.+.+.|++++-++ +.+|..+|+.-. -.+..+++.|+
T Consensus 321 T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql-t~VPdEVfea~~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 321 TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL-TLVPDEVFEAAKSEIVTSVNFSKNQ 399 (565)
T ss_pred HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccc-ccCCHHHHHHhhhcceEEEecccch
Confidence 0001 122345789999999998 889999885332 37788899988
Q ss_pred CcccCChhh-------------------hHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccc
Q 037539 401 FHGNIPYQF-------------------ENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPK 461 (622)
Q Consensus 401 l~~~~~~~~-------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 461 (622)
+. .+|..+ .....+.+++|..|+|++|.+. .+|..++.+..|++|++++|++. ..|..
T Consensus 400 L~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~ 476 (565)
T KOG0472|consen 400 LC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPEC 476 (565)
T ss_pred Hh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHH
Confidence 76 333332 1233347888889999988888 78888888888999999999887 78888
Q ss_pred cCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCC
Q 037539 462 IGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLEL 526 (622)
Q Consensus 462 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~l 526 (622)
+..+..++.+-.++|++....|+.+.++..|++||+.+|.+....|.-+-...+..+.+.|||+-
T Consensus 477 ~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 477 LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 88888888888888999888888899999999999999999976666688889999999999874
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=1.3e-34 Score=300.90 Aligned_cols=429 Identities=26% Similarity=0.303 Sum_probs=291.7
Q ss_pred CcEEeCCCCCCCCC--------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccE
Q 037539 35 LQELVLGLGKFFET--------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIET 106 (622)
Q Consensus 35 L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~ 106 (622)
++.|+++.|.+-.. -+|+.|++++|.+...|. .+..+++|+.|+++.|.+.... .+..++ .+|++
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~---~it~l~~L~~ln~s~n~i~~vp---~s~~~~-~~l~~ 95 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPI---QITLLSHLRQLNLSRNYIRSVP---SSCSNM-RNLQY 95 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCc---hhhhHHHHhhcccchhhHhhCc---hhhhhh-hcchh
Confidence 56666666655331 337777777777766655 5666777777777777665542 355566 77777
Q ss_pred EEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccC
Q 037539 107 LDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVV 186 (622)
Q Consensus 107 L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~ 186 (622)
|.|.+|.+. ..|..+ ..+.+|++|++++|.+. ..|..+..+..++.+..++|.-....+..
T Consensus 96 lnL~~n~l~--~lP~~~------~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~---------- 156 (1081)
T KOG0618|consen 96 LNLKNNRLQ--SLPASI------SELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQT---------- 156 (1081)
T ss_pred heeccchhh--cCchhH------HhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccc----------
Confidence 777777665 455544 56677777777777766 56666777777777777776211111111
Q ss_pred CCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCc
Q 037539 187 NSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIP 265 (622)
Q Consensus 187 ~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~ 265 (622)
..+.+++..|.+.+.++. +..+.. .|+|.+|.+. ...+..+.+|+.|....|++....
T Consensus 157 -~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~--------------- 215 (1081)
T KOG0618|consen 157 -SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE--------------- 215 (1081)
T ss_pred -cchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE---------------
Confidence 256666666666655554 554444 5777777765 124566677777777777765432
Q ss_pred hhHHhcCCCCcEEEccCCcCcccCCCC---cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCc
Q 037539 266 DWFWDLSNKLSYLNLSNNHFRGKLPDL---SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNI 342 (622)
Q Consensus 266 ~~~~~~~~~L~~L~l~~n~l~~~~~~~---~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 342 (622)
..-++++.|+..+|.+....+.. ++++++++.|.+.+ +|.++..+.+|+.++..+|+++ .+|..+....+|
T Consensus 216 ----~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L 289 (1081)
T KOG0618|consen 216 ----ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSL 289 (1081)
T ss_pred ----ecCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhH
Confidence 11247777888877777444432 77888888887774 4477778888888888888875 566666667777
Q ss_pred cEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHh-------------------------hcccccEeecC
Q 037539 343 WTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGE-------------------------SLQNLIVLSLK 397 (622)
Q Consensus 343 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~-------------------------~l~~L~~L~L~ 397 (622)
+.|.+..|.+. .+|....+.+.|++|+|..|.+ ..+|...+. ..+.|+.|++.
T Consensus 290 ~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 290 VSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred HHHHhhhhhhh-hCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 77777777776 5666667777778888877777 556554332 23356667777
Q ss_pred CCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCc
Q 037539 398 SNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNL 477 (622)
Q Consensus 398 ~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 477 (622)
+|.+++..-..+. +.++|+.|+|++|++.......+.++..|++|+||+|+++ .+|+.+..++.|++|...+|+
T Consensus 368 nN~Ltd~c~p~l~-----~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLV-----NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred cCcccccchhhhc-----cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCc
Confidence 7777765544444 6888999999999888666667788888999999999988 677888888888888888888
Q ss_pred cCccCCccccCCCCCCEEECcCCcCcc-cCCCCCcCCccCcccccCCcCC
Q 037539 478 FSGSIPCSLSQLSGLGVLDLSYNNLSG-KIPSGTQLQSFNASVYAGNLEL 526 (622)
Q Consensus 478 l~~~~~~~l~~l~~L~~L~ls~N~l~~-~~p~~~~~~~l~~~~~~~n~~l 526 (622)
+. ..| .+..++.|+.+|+|.|+++. .+|.....+.++.+++.||.++
T Consensus 442 l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 442 LL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred ee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 87 667 67888888888888888864 3444433377788888888753
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.2e-34 Score=284.14 Aligned_cols=361 Identities=24% Similarity=0.304 Sum_probs=222.1
Q ss_pred cCcCCcEEeCCCCCCCCC---------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhcccc
Q 037539 31 NIERLQELVLGLGKFFET---------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLS 101 (622)
Q Consensus 31 ~l~~L~~L~L~~n~i~~~---------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 101 (622)
-++..+-.|+++|.++|. ++++.|.|....+...|+ .++.+.+|++|.+++|++..... .+..+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPe---EL~~lqkLEHLs~~HN~L~~vhG---ELs~L- 77 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPE---ELSRLQKLEHLSMAHNQLISVHG---ELSDL- 77 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChH---HHHHHhhhhhhhhhhhhhHhhhh---hhccc-
Confidence 466677788888888765 778888888777777766 78888888888888887765432 56677
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhcc
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLS 181 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 181 (622)
+.|+.+++..|++..-.+|..+ -.+..|+.||||+|++. ..|..+..-+++-+|+||+|+|..+....+.++
T Consensus 78 p~LRsv~~R~N~LKnsGiP~di------F~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinL- 149 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDI------FRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINL- 149 (1255)
T ss_pred hhhHHHhhhccccccCCCCchh------cccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhh-
Confidence 8888888888888765667665 46677888888888877 677777777888888888888775444443333
Q ss_pred ccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcc
Q 037539 182 FGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGIS 261 (622)
Q Consensus 182 l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 261 (622)
. .|-.|||++|++...+|.+..+..|+.|+|++|.+...-...+..+++|++|.+++.+-+-
T Consensus 150 ----t-DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl------------- 211 (1255)
T KOG0444|consen 150 ----T-DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL------------- 211 (1255)
T ss_pred ----H-hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh-------------
Confidence 3 3777888888777666667777777777777776653322333444555555555544221
Q ss_pred cCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCC
Q 037539 262 DSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNN 341 (622)
Q Consensus 262 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 341 (622)
.. +|..+..+.+|..+|++.|.+. ..|+.+..+++
T Consensus 212 ~N--------------------------------------------~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~ 246 (1255)
T KOG0444|consen 212 DN--------------------------------------------IPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRN 246 (1255)
T ss_pred hc--------------------------------------------CCCchhhhhhhhhccccccCCC-cchHHHhhhhh
Confidence 12 3333444444444444444444 44444444444
Q ss_pred ccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCccc-CChhhhHhHhhhcCCc
Q 037539 342 IWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGN-IPYQFENEYKSTLGLV 420 (622)
Q Consensus 342 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~l~~L 420 (622)
|+.|+||+|+|+ .+........+|++|+++.|++ ..+|+.+. .++.|+.|.+.+|+++-. +|..++ .+.+|
T Consensus 247 LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQL-t~LP~avc-KL~kL~kLy~n~NkL~FeGiPSGIG-----KL~~L 318 (1255)
T KOG0444|consen 247 LRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQL-TVLPDAVC-KLTKLTKLYANNNKLTFEGIPSGIG-----KLIQL 318 (1255)
T ss_pred hheeccCcCcee-eeeccHHHHhhhhhhccccchh-ccchHHHh-hhHHHHHHHhccCcccccCCccchh-----hhhhh
Confidence 555555555444 2333333344455555555554 44454444 355555555555544421 233332 34455
Q ss_pred cEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccC
Q 037539 421 RCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 421 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 479 (622)
+++..++|.+. ..|+.+..|..|+.|.|++|++. ..|+++.-++.|+.||+..|+-.
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 55555555555 66666777777777777777665 56666666777777777766544
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.8e-34 Score=283.74 Aligned_cols=363 Identities=25% Similarity=0.303 Sum_probs=306.9
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhcc
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLS 181 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 181 (622)
+-.+-+|+++|.+++...|+.. ..+++++.|.|...++. .+|+.++.+.+|++|.+++|++.... ..
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v------~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh-GE----- 73 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDV------EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH-GE----- 73 (1255)
T ss_pred ceeecccccCCcCCCCcCchhH------HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh-hh-----
Confidence 5577789999999876778776 67889999999999888 78999999999999999999887433 33
Q ss_pred ccccCCCcCEEEccCCcccc--cCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCC
Q 037539 182 FGCVVNSLEGLYLRWNDFTG--PIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIG 259 (622)
Q Consensus 182 l~~~~~~L~~L~L~~n~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 259 (622)
++.++. |+.+.+.+|++.. .++++..+..|..|||++|++. ..|..+..-+++-.|+|++|+|.
T Consensus 74 Ls~Lp~-LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie------------ 139 (1255)
T KOG0444|consen 74 LSDLPR-LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE------------ 139 (1255)
T ss_pred hccchh-hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc------------
Confidence 455566 9999999987753 4444888999999999999998 67888888899999999999987
Q ss_pred cccCCchhHHhcCCCCcEEEccCCcCcccCCCC----cccEEeCCCCcCccccCccccCCCCCCEEEccCCccc-ccCCC
Q 037539 260 ISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLS-GKIPD 334 (622)
Q Consensus 260 l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~ 334 (622)
.||..++-.+..|-.||+++|++....|.+ .|+.|+|++|.+...-...+..+++|+.|.+++.+-+ ..+|.
T Consensus 140 ---tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 140 ---TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred ---cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC
Confidence 778888877778889999999998766664 7899999999887655566667888899999987544 56788
Q ss_pred ccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHh
Q 037539 335 SMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYK 414 (622)
Q Consensus 335 ~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 414 (622)
++..+.+|..+++|.|.+. ..|+.+.++++|+.|+|++|+| +++..... .-.+|++|+++.|+++ ..|..+.
T Consensus 217 sld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~i-teL~~~~~-~W~~lEtLNlSrNQLt-~LP~avc---- 288 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKI-TELNMTEG-EWENLETLNLSRNQLT-VLPDAVC---- 288 (1255)
T ss_pred chhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCce-eeeeccHH-HHhhhhhhccccchhc-cchHHHh----
Confidence 8999999999999999998 8999999999999999999999 66655554 3578999999999998 5565555
Q ss_pred hhcCCccEEECCCCcCCc-cchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCC
Q 037539 415 STLGLVRCLDLSSNKLDG-AIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLG 493 (622)
Q Consensus 415 ~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 493 (622)
.++.|+.|.+.+|+++- -+|+.++.+..|+.+..++|++. ..|+++..+..|+.|.|++|++. .+|+++.-++.|+
T Consensus 289 -KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 289 -KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLK 365 (1255)
T ss_pred -hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcc
Confidence 78999999999999853 57899999999999999999997 88999999999999999999998 7899999999999
Q ss_pred EEECcCCcCccc
Q 037539 494 VLDLSYNNLSGK 505 (622)
Q Consensus 494 ~L~ls~N~l~~~ 505 (622)
.||+..|+-.-.
T Consensus 366 vLDlreNpnLVM 377 (1255)
T KOG0444|consen 366 VLDLRENPNLVM 377 (1255)
T ss_pred eeeccCCcCccC
Confidence 999999986533
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=9e-32 Score=279.74 Aligned_cols=416 Identities=25% Similarity=0.242 Sum_probs=264.9
Q ss_pred CCcEEeCCCCCCCCC-------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccE
Q 037539 34 RLQELVLGLGKFFET-------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIET 106 (622)
Q Consensus 34 ~L~~L~L~~n~i~~~-------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~ 106 (622)
+|+.||+++|.++.. ++|+.|+++.|.+...|. ...++.+|+++.|.+|.+... | .++..+ .+|++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~---s~~~~~~l~~lnL~~n~l~~l-P--~~~~~l-knl~~ 118 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPS---SCSNMRNLQYLNLKNNRLQSL-P--ASISEL-KNLQY 118 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCch---hhhhhhcchhheeccchhhcC-c--hhHHhh-hcccc
Confidence 399999999998665 899999999999998876 899999999999999987654 5 578888 99999
Q ss_pred EEccCCCCCCCCCchhhhccc--------------ccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCc
Q 037539 107 LDLSDNNLPSSSVYPWLLNLK--------------AFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQ 172 (622)
Q Consensus 107 L~Ls~n~l~~~~~~~~~~~~~--------------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~ 172 (622)
||+|+|.+. .+|..+..+. .++... ++++++..|.+.+.++..+..+++ .|+|++|.+...
T Consensus 119 LdlS~N~f~--~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~ 193 (1081)
T KOG0618|consen 119 LDLSFNHFG--PIPLVIEVLTAEEELAASNNEKIQRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL 193 (1081)
T ss_pred cccchhccC--CCchhHHhhhHHHHHhhhcchhhhhhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhhh
Confidence 999999997 4555442221 122222 556666666666666655555555 577777766521
Q ss_pred CchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccc
Q 037539 173 YSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLC 252 (622)
Q Consensus 173 ~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 252 (622)
. +..+.. |+.|....|++.... -.-++|+.|+.+.|.++...+ .+ --.+|++++++.|+++
T Consensus 194 d--------ls~~~~-l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~~-~p-~p~nl~~~dis~n~l~----- 254 (1081)
T KOG0618|consen 194 D--------LSNLAN-LEVLHCERNQLSELE---ISGPSLTALYADHNPLTTLDV-HP-VPLNLQYLDISHNNLS----- 254 (1081)
T ss_pred h--------hhhccc-hhhhhhhhcccceEE---ecCcchheeeeccCcceeecc-cc-ccccceeeecchhhhh-----
Confidence 1 222333 555555555443211 122556666666666663222 11 1246777777777766
Q ss_pred cccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCC----CcccEEeCCCCcCccccCccccCCCCCCEEEccCCcc
Q 037539 253 ILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPD----LSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRL 328 (622)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i 328 (622)
.+|+|+..+ .+|+.++..+|.++..... .+++.+++..|.+. .+|....+++.|++|+|..|++
T Consensus 255 ----------~lp~wi~~~-~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 255 ----------NLPEWIGAC-ANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred ----------cchHHHHhc-ccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccc
Confidence 566666554 4777777777777432211 26666666666665 4556666777788888888877
Q ss_pred cccCCCccCCCCC-ccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCCh
Q 037539 329 SGKIPDSMGFLNN-IWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPY 407 (622)
Q Consensus 329 ~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 407 (622)
....+..+..+.. |+.|+.+.|++.......=..++.|+.|.+.+|.+++..-..+. +.+.|++|+|++|++...+..
T Consensus 323 ~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 323 PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHH
Confidence 7433333333333 66666677766532221222345677777777777444322222 567777777777777633333
Q ss_pred hhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCcccc
Q 037539 408 QFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLS 487 (622)
Q Consensus 408 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 487 (622)
.+. +++.|++|+|+||+++ .+|+.+..++.|++|...+|.+. ..| .+.++++|+.+|++.|.++...-..-.
T Consensus 402 ~~~-----kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 402 KLR-----KLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred HHh-----chHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 333 6777777777777777 66677777777777777777776 555 667777777777777777654322222
Q ss_pred CCCCCCEEECcCCc
Q 037539 488 QLSGLGVLDLSYNN 501 (622)
Q Consensus 488 ~l~~L~~L~ls~N~ 501 (622)
..+.|++||++||.
T Consensus 474 p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNT 487 (1081)
T ss_pred CCcccceeeccCCc
Confidence 33677777777776
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=5.7e-24 Score=246.96 Aligned_cols=338 Identities=20% Similarity=0.208 Sum_probs=198.4
Q ss_pred hhcCCCCCCEEEccCCCC------CCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecc
Q 037539 70 VVAKLHSLKSLVLFSCAL------PPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDS 143 (622)
Q Consensus 70 ~l~~l~~L~~L~Ls~n~l------~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n 143 (622)
+|.++++|+.|.+..+.. ....| ..+..++.+|+.|++.++.++ .+|..+ ...+|++|++++|
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp--~~~~~lp~~Lr~L~~~~~~l~--~lP~~f-------~~~~L~~L~L~~s 621 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLP--EGFDYLPPKLRLLRWDKYPLR--CMPSNF-------RPENLVKLQMQGS 621 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecC--cchhhcCcccEEEEecCCCCC--CCCCcC-------CccCCcEEECcCc
Confidence 566666666666654432 11223 344455455666666666654 344433 3456666666666
Q ss_pred cCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccC
Q 037539 144 ELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCL 222 (622)
Q Consensus 144 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l 222 (622)
.+. .++..+..+++|+.|+++++......|. ++.+++ |++|++++|.....+|. ++.+++|+.|++++|..
T Consensus 622 ~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~------ls~l~~-Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 622 KLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD------LSMATN-LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred ccc-ccccccccCCCCCEEECCCCCCcCcCCc------cccCCc-ccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence 665 4455555666666666665543333342 233333 66666666554444444 55566666666665543
Q ss_pred CccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCC
Q 037539 223 NGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSN 302 (622)
Q Consensus 223 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n 302 (622)
-..+|..+ ++++|+.|++++|.... .+|. ..++|+.|++++|.+.
T Consensus 694 L~~Lp~~i-~l~sL~~L~Lsgc~~L~--------------~~p~----~~~nL~~L~L~~n~i~---------------- 738 (1153)
T PLN03210 694 LEILPTGI-NLKSLYRLNLSGCSRLK--------------SFPD----ISTNISWLDLDETAIE---------------- 738 (1153)
T ss_pred cCccCCcC-CCCCCCEEeCCCCCCcc--------------cccc----ccCCcCeeecCCCccc----------------
Confidence 33344333 45555555555553210 1121 1134444444444433
Q ss_pred cCccccCccccCCCCCCEEEccCCccc-------ccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCc
Q 037539 303 LLSGGLPDCWLHFDRLFILNLANNRLS-------GKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNA 375 (622)
Q Consensus 303 ~l~~~~~~~~~~~~~L~~L~L~~n~i~-------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 375 (622)
.+|..+ .+++|++|++.++... ...+..+...++|+.|++++|.....+|..++++++|+.|++++|.
T Consensus 739 ----~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 739 ----EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred ----cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 233322 4556666666553321 1111122335678888888887666778888888888888888876
Q ss_pred ccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCcccc
Q 037539 376 IFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLT 455 (622)
Q Consensus 376 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 455 (622)
..+.+|..+ .+++|+.|++++|.....+|. ...+|+.|+|++|.++ .+|..+..+++|++|++++|+-.
T Consensus 814 ~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~--------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 814 NLETLPTGI--NLESLESLDLSGCSRLRTFPD--------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred CcCeeCCCC--CccccCEEECCCCCccccccc--------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence 557777665 478888888888765444442 2457888888888887 67778888888888888886543
Q ss_pred CCCccccCCCCCCCEEeCCCCc
Q 037539 456 GPITPKIGELTSLDFLDLSRNL 477 (622)
Q Consensus 456 ~~~~~~l~~l~~L~~L~Ls~n~ 477 (622)
..+|..+..+++|+.+++++|.
T Consensus 883 ~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 883 QRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CccCcccccccCCCeeecCCCc
Confidence 3566677778888888888875
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.5e-22 Score=235.07 Aligned_cols=340 Identities=22% Similarity=0.210 Sum_probs=227.6
Q ss_pred hhccccCcccEEEccCCCCCC-----CCCchhhhcccccCCC-ccccEEEeecccCCCCCchhhcCCccCcEeEeecCCC
Q 037539 96 WHFNLSTSIETLDLSDNNLPS-----SSVYPWLLNLKAFQHM-VSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKL 169 (622)
Q Consensus 96 ~l~~l~~~L~~L~Ls~n~l~~-----~~~~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i 169 (622)
++..+ ++|+.|.+..+.... ..+|..+ ..+ ++|+.|.+.++.+. .+|..| ...+|+.|++++|++
T Consensus 553 aF~~m-~~L~~L~~~~~~~~~~~~~~~~lp~~~------~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l 623 (1153)
T PLN03210 553 AFKGM-RNLLFLKFYTKKWDQKKEVRWHLPEGF------DYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKL 623 (1153)
T ss_pred HHhcC-ccccEEEEecccccccccceeecCcch------hhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccc
Confidence 45555 667777665543211 0222222 222 35666777666665 455555 346667777776666
Q ss_pred CCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCC-Ccc
Q 037539 170 SGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNS-LRA 248 (622)
Q Consensus 170 ~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~ 248 (622)
.. .+.. +..+++ |+.|++++|.....+|.+..+++|+.|++++|.....+|..+..+++|+.|++++|. ++
T Consensus 624 ~~-L~~~-----~~~l~~-Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~- 695 (1153)
T PLN03210 624 EK-LWDG-----VHSLTG-LRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE- 695 (1153)
T ss_pred cc-cccc-----cccCCC-CCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC-
Confidence 53 3333 223333 677777666544555556666667777776665545566666666666666666653 22
Q ss_pred cccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcc
Q 037539 249 ISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRL 328 (622)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i 328 (622)
.+|..+ .+++|+.|++++|... ...|. ...+|+.|++++|.+
T Consensus 696 --------------~Lp~~i--~l~sL~~L~Lsgc~~L-------------------~~~p~---~~~nL~~L~L~~n~i 737 (1153)
T PLN03210 696 --------------ILPTGI--NLKSLYRLNLSGCSRL-------------------KSFPD---ISTNISWLDLDETAI 737 (1153)
T ss_pred --------------ccCCcC--CCCCCCEEeCCCCCCc-------------------ccccc---ccCCcCeeecCCCcc
Confidence 333322 2345555555555332 23332 235789999999998
Q ss_pred cccCCCccCCCCCccEEeeeCCcCC-------CCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcC
Q 037539 329 SGKIPDSMGFLNNIWTLNLHNNRLT-------GKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKF 401 (622)
Q Consensus 329 ~~~~~~~~~~l~~L~~L~Ls~n~i~-------~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l 401 (622)
. .+|..+ .+++|++|.+.++... ...+..+...++|+.|++++|...+.+|..+. ++++|+.|++++|..
T Consensus 738 ~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 738 E-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCIN 814 (1153)
T ss_pred c-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCC
Confidence 7 556554 5789999998875432 11222333457999999999987788998877 799999999999876
Q ss_pred cccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCcc
Q 037539 402 HGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS 481 (622)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 481 (622)
.+.+|... .+++|+.|++++|.....+|.. ..+|+.|+|++|.++ .+|..+..+++|+.|+|++|+-...
T Consensus 815 L~~LP~~~------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 815 LETLPTGI------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred cCeeCCCC------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCc
Confidence 55666554 5899999999998765555543 468999999999998 6888999999999999999765556
Q ss_pred CCccccCCCCCCEEECcCCcCc
Q 037539 482 IPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 482 ~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
+|..+..+++|+.+++++|.-.
T Consensus 885 l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 885 VSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred cCcccccccCCCeeecCCCccc
Confidence 7778889999999999999643
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=1.5e-25 Score=212.54 Aligned_cols=381 Identities=25% Similarity=0.249 Sum_probs=231.7
Q ss_pred cccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeec-CCCCCcCchhh
Q 037539 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSY-NKLSGQYSQVI 177 (622)
Q Consensus 99 ~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~ 177 (622)
++|+.-..++|..|+|+. +|+ .+|+.+++|+.|||++|.|+.+.|++|.++..|..|-+.+ |+|++.....|
T Consensus 64 ~LP~~tveirLdqN~I~~--iP~-----~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISS--IPP-----GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred cCCCcceEEEeccCCccc--CCh-----hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 666888899999999984 444 4578999999999999999999999999999988887776 88987777775
Q ss_pred hhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccC
Q 037539 178 QNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTS 256 (622)
Q Consensus 178 ~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 256 (622)
..+. +|+.|.+.-|++.-.... |..+++|..|.+.+|.+..+....|..+..++++.+..|.+.......++.
T Consensus 137 ~gL~------slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla 210 (498)
T KOG4237|consen 137 GGLS------SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA 210 (498)
T ss_pred hhHH------HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhh
Confidence 5554 599999998888866666 899999999999999988665558888999999998888743322111000
Q ss_pred CCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC---cccEE---eCCCCcCcccc-CccccCCCCCCEEEccCCccc
Q 037539 257 PIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL---SLRFD---DLSSNLLSGGL-PDCWLHFDRLFILNLANNRLS 329 (622)
Q Consensus 257 ~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~L~~L---~ls~n~l~~~~-~~~~~~~~~L~~L~L~~n~i~ 329 (622)
... ...|..+.. ........+.+.++...-+.- .++.+ -.+.+...+.. ..+|..+++|++|++++|+++
T Consensus 211 ~~~--a~~~ietsg-arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 211 DDL--AMNPIETSG-ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hHH--hhchhhccc-ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 000 000000000 000111111111111100000 11111 11112222222 246778888888888888888
Q ss_pred ccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhh
Q 037539 330 GKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQF 409 (622)
Q Consensus 330 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 409 (622)
.+-+.+|.+...+++|.|..|++...-...|.++..|+.|+|.+|+|+ .+....|+.+.+|.+|++-.|++....-..+
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w 366 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW 366 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecccccccceeeeeehccCcccCccchHH
Confidence 777778888888888888888887666667888888888888888884 4444445567788888887777653332222
Q ss_pred hHhHhh-----------hcCCccEEECCCCcCCc---cchHHhh---------cccc----------------------c
Q 037539 410 ENEYKS-----------TLGLVRCLDLSSNKLDG---AIPEEIM---------DLVG----------------------L 444 (622)
Q Consensus 410 ~~~~~~-----------~l~~L~~L~L~~n~l~~---~~~~~~~---------~l~~----------------------L 444 (622)
-..+.. ....++.+.+++..+.. ..|+..+ .++- -
T Consensus 367 l~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~ 446 (498)
T KOG4237|consen 367 LGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDV 446 (498)
T ss_pred HHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchh
Confidence 211111 23345566666554431 1111110 1111 2
Q ss_pred ceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCC
Q 037539 445 IALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500 (622)
Q Consensus 445 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 500 (622)
.+|++.+|.++ .+|.. .+.+| .+|+++|+++...-..|.++.+|.+|-+++|
T Consensus 447 telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 447 TELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred HHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 34556666665 34433 34555 6666666665444445556666666655554
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=7.1e-24 Score=201.28 Aligned_cols=282 Identities=22% Similarity=0.174 Sum_probs=170.4
Q ss_pred cCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccC-CCCcccccccccCCCCcccCCch
Q 037539 189 LEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDG-NSLRAISLCILTSPIGISDSIPD 266 (622)
Q Consensus 189 L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~~~~~ 266 (622)
-.+++|..|+|+..++. |+.+++|+.|||+.|+|+.+.|.+|.++++|.+|-+.+ |+|+ .+|+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~---------------~l~k 133 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT---------------DLPK 133 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh---------------hhhh
Confidence 44444555555444433 55555555555555555555555555555554444443 4444 3444
Q ss_pred hHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEe
Q 037539 267 WFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLN 346 (622)
Q Consensus 267 ~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 346 (622)
..+..+..++.|.+.-|++. -...+.|..++++..|.+..|.+....-..|..+..++++.
T Consensus 134 ~~F~gL~slqrLllNan~i~-------------------Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHIN-------------------CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred hHhhhHHHHHHHhcChhhhc-------------------chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 44444444444444443332 12233444444455555555544422222444455555555
Q ss_pred eeCCcC------------CCCCCccccCCCCccEEEccCCcccccCchhHH-hhcccccEeecCCCcCcccCChhhhHhH
Q 037539 347 LHNNRL------------TGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIG-ESLQNLIVLSLKSNKFHGNIPYQFENEY 413 (622)
Q Consensus 347 Ls~n~i------------~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 413 (622)
+..|.+ ....|..+++.+...-..+.+.++ ..++..-+ ....++..=-.+.+...+..|..-
T Consensus 195 lA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri-~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~c---- 269 (498)
T KOG4237|consen 195 LAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRI-NQEDARKFLCSLESLPSRLSSEDFPDSICPAKC---- 269 (498)
T ss_pred hhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHh-cccchhhhhhhHHhHHHhhccccCcCCcChHHH----
Confidence 544441 123344455555555566666666 44444333 122233332334444444444332
Q ss_pred hhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCC
Q 037539 414 KSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLG 493 (622)
Q Consensus 414 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 493 (622)
++.+++|+.|+|++|+++++-+.+|.+...+++|.|..|++.......|.++..|++|+|.+|+|+...|.+|..+.+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 34899999999999999988899999999999999999999876777899999999999999999999999999999999
Q ss_pred EEECcCCcCcccCCCC
Q 037539 494 VLDLSYNNLSGKIPSG 509 (622)
Q Consensus 494 ~L~ls~N~l~~~~p~~ 509 (622)
+|++-.|++.|.+--.
T Consensus 350 ~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 350 TLNLLSNPFNCNCRLA 365 (498)
T ss_pred eeehccCcccCccchH
Confidence 9999999998876543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=7.5e-21 Score=205.21 Aligned_cols=199 Identities=29% Similarity=0.311 Sum_probs=123.4
Q ss_pred CCcEEEccCCcCcccCCCC--cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCc
Q 037539 274 KLSYLNLSNNHFRGKLPDL--SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNR 351 (622)
Q Consensus 274 ~L~~L~l~~n~l~~~~~~~--~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 351 (622)
+|+.|++++|.+.. +|.. .|+.|++++|.+.. +|. ..++|+.|++++|++++ +|.. ..+|+.|++++|.
T Consensus 263 sL~~L~Ls~N~L~~-Lp~lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~ 333 (788)
T PRK15387 263 GLLELSIFSNPLTH-LPALPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQ 333 (788)
T ss_pred ccceeeccCCchhh-hhhchhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCc
Confidence 44444444444432 1211 34445555555442 232 23567777777777774 3332 2356777777777
Q ss_pred CCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC
Q 037539 352 LTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD 431 (622)
Q Consensus 352 i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 431 (622)
++ .+|.. ..+|++|++++|++ ..+|.. .++|+.|++++|++.. +|. ....|+.|++++|+++
T Consensus 334 L~-~LP~l---p~~Lq~LdLS~N~L-s~LP~l----p~~L~~L~Ls~N~L~~-LP~--------l~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 334 LT-SLPTL---PSGLQELSVSDNQL-ASLPTL----PSELYKLWAYNNRLTS-LPA--------LPSGLKELIVSGNRLT 395 (788)
T ss_pred cc-ccccc---ccccceEecCCCcc-CCCCCC----Ccccceehhhcccccc-Ccc--------cccccceEEecCCccc
Confidence 76 34431 24677888888877 456542 3567777788777774 332 2346778888888877
Q ss_pred ccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 432 GAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 432 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
.+|.. .++|+.|++++|.+++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..|.
T Consensus 396 -~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 396 -SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred -CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 34432 3567788888888874 5543 346777888888887 6777788888888888888888766553
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=8.8e-21 Score=204.66 Aligned_cols=264 Identities=27% Similarity=0.318 Sum_probs=129.4
Q ss_pred cccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCC
Q 037539 134 SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLE 213 (622)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~ 213 (622)
.-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|.. .+ +|++|++++|+++.. |.+ .++|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l--------p~-~Lk~LdLs~N~LtsL-P~l--p~sL~ 265 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL--------PP-ELRTLEVSGNQLTSL-PVL--PPGLL 265 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC--------CC-CCcEEEecCCccCcc-cCc--ccccc
Confidence 3445666666665 4454443 256666666666553 2211 11 366666666655532 221 24555
Q ss_pred EEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCc
Q 037539 214 AWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLS 293 (622)
Q Consensus 214 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 293 (622)
.|++++|.++. +|.. .++|+.|++++|+++ .+|. .+++|+.|++++|++.+. |..
T Consensus 266 ~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt---------------~LP~----~p~~L~~LdLS~N~L~~L-p~l- 320 (788)
T PRK15387 266 ELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT---------------SLPV----LPPGLQELSVSDNQLASL-PAL- 320 (788)
T ss_pred eeeccCCchhh-hhhc---hhhcCEEECcCCccc---------------cccc----cccccceeECCCCccccC-CCC-
Confidence 66666665552 2221 234555666666554 2222 123555555555555421 111
Q ss_pred ccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccC
Q 037539 294 LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEK 373 (622)
Q Consensus 294 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 373 (622)
...|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|.. .++|+.|++++
T Consensus 321 ---------------------p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~ 371 (788)
T PRK15387 321 ---------------------PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYN 371 (788)
T ss_pred ---------------------cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhc
Confidence 1234445555555542 2221 134555555555555 23321 23455555555
Q ss_pred CcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCcc
Q 037539 374 NAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNH 453 (622)
Q Consensus 374 n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 453 (622)
|.+ ..+|.. ..+|+.|++++|++++ +|. ..++|+.|++++|.++ .+|.. ..+|+.|++++|+
T Consensus 372 N~L-~~LP~l----~~~L~~LdLs~N~Lt~-LP~--------l~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~Nq 433 (788)
T PRK15387 372 NRL-TSLPAL----PSGLKELIVSGNRLTS-LPV--------LPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQ 433 (788)
T ss_pred ccc-ccCccc----ccccceEEecCCcccC-CCC--------cccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCc
Confidence 555 334432 2345556666665553 221 1234566666666665 23432 2345566666666
Q ss_pred ccCCCccccCCCCCCCEEeCCCCccCccCCccc
Q 037539 454 LTGPITPKIGELTSLDFLDLSRNLFSGSIPCSL 486 (622)
Q Consensus 454 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 486 (622)
++ .+|..+.++++|+.|+|++|++++..+..+
T Consensus 434 Lt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 434 LT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 65 456666666666666666666665555444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=8.4e-19 Score=190.76 Aligned_cols=180 Identities=28% Similarity=0.395 Sum_probs=92.2
Q ss_pred CCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCc
Q 037539 186 VNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIP 265 (622)
Q Consensus 186 ~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~ 265 (622)
.++...|+++++.++.....+. +.|+.|++++|.++. +|..+. ++|++|++++|+++ .+|
T Consensus 177 ~~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt---------------sLP 236 (754)
T PRK15370 177 KNNKTELRLKILGLTTIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT---------------SIP 236 (754)
T ss_pred ccCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc---------------cCC
Confidence 3347888888887775332243 578888888888874 454443 57888888888876 445
Q ss_pred hhHHhcCCCCcEEEccCCcCcccCCC-C--cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCc
Q 037539 266 DWFWDLSNKLSYLNLSNNHFRGKLPD-L--SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNI 342 (622)
Q Consensus 266 ~~~~~~~~~L~~L~l~~n~l~~~~~~-~--~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 342 (622)
..+. ++|+.|++++|.+. .+|. + .|+.|++++|.+.. +|..+. ++|+.|++++|+++. +|..+. ++|
T Consensus 237 ~~l~---~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL 306 (754)
T PRK15370 237 ATLP---DTIQEMELSINRIT-ELPERLPSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGI 306 (754)
T ss_pred hhhh---ccccEEECcCCccC-cCChhHhCCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhH
Confidence 4332 36777888777776 2232 1 44445555444442 232221 244444444444442 222221 234
Q ss_pred cEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCc
Q 037539 343 WTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFH 402 (622)
Q Consensus 343 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~ 402 (622)
+.|++++|.++. +|..+ .++|+.|++++|.+ ..+|..+ .++|+.|++++|+++
T Consensus 307 ~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L-t~LP~~l---~~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 307 THLNVQSNSLTA-LPETL--PPGLKTLEAGENAL-TSLPASL---PPELQVLDVSKNQIT 359 (754)
T ss_pred HHHHhcCCcccc-CCccc--cccceeccccCCcc-ccCChhh---cCcccEEECCCCCCC
Confidence 444444444442 22211 13444444444444 2333322 134444444444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=1.8e-18 Score=188.15 Aligned_cols=143 Identities=22% Similarity=0.377 Sum_probs=81.7
Q ss_pred CCcEEEccCCcCcccCCCC--cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCc
Q 037539 274 KLSYLNLSNNHFRGKLPDL--SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNR 351 (622)
Q Consensus 274 ~L~~L~l~~n~l~~~~~~~--~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 351 (622)
+|+.|++++|++.+..+.+ .++.|++++|.+.. +|..+ .++|+.|++++|.+++ +|..+ .++|+.|++++|+
T Consensus 284 sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~ 357 (754)
T PRK15370 284 ELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQ 357 (754)
T ss_pred CCcEEECCCCccccCcccchhhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCC
Confidence 4555555555544221111 34445555555442 23222 2467777777777763 44444 2577777777777
Q ss_pred CCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC
Q 037539 352 LTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD 431 (622)
Q Consensus 352 i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 431 (622)
++ .+|..+ .++|++|++++|.+ ..+|..+. ..|+.|++++|++. .+|..+. .+...++.+..|++.+|++.
T Consensus 358 L~-~LP~~l--p~~L~~LdLs~N~L-t~LP~~l~---~sL~~LdLs~N~L~-~LP~sl~-~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 358 IT-VLPETL--PPTITTLDVSRNAL-TNLPENLP---AALQIMQASRNNLV-RLPESLP-HFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CC-cCChhh--cCCcCEEECCCCcC-CCCCHhHH---HHHHHHhhccCCcc-cCchhHH-HHhhcCCCccEEEeeCCCcc
Confidence 76 455444 25777777777777 46666543 35777777777776 3443332 12224566777777777775
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=1e-19 Score=184.25 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=28.6
Q ss_pred EEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCC----CchhhcCCccCcEeEeecCCCC
Q 037539 106 TLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGG----IPKFFGNMCSLKKLRLSYNKLS 170 (622)
Q Consensus 106 ~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~ 170 (622)
.|+|..+.+++...+.. +..+.+|+.|+++++.++.. ++..+...+.+++|+++++.+.
T Consensus 2 ~l~L~~~~l~~~~~~~~------~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 2 QLSLKGELLKTERATEL------LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred ccccccCcccccchHHH------HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence 35555555553122221 23444566666666655432 2333444555666666555544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=2.5e-19 Score=181.35 Aligned_cols=185 Identities=28% Similarity=0.307 Sum_probs=99.9
Q ss_pred CCCEEEccCCccccc----CCCccCCC-CCccEEeeeCCcCCCC----CCccccCCCCccEEEccCCcccccCchhHHh-
Q 037539 317 RLFILNLANNRLSGK----IPDSMGFL-NNIWTLNLHNNRLTGK----LPSPLRNFSQLRVLDLEKNAIFGEIPTWIGE- 386 (622)
Q Consensus 317 ~L~~L~L~~n~i~~~----~~~~~~~l-~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~- 386 (622)
+|++|++++|++++. +...+..+ ++|++|++++|.+++. ++..+..+++|++|++++|.+.+.....+..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 355555555555421 11223334 5666666666665521 2234455566777777776664322122211
Q ss_pred --hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhc-----ccccceeecCCccccCC--
Q 037539 387 --SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD-----LVGLIALNLSRNHLTGP-- 457 (622)
Q Consensus 387 --~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~-- 457 (622)
.+++|+.|++++|.+.+.....+.. ....+++|++|++++|.+++.....+.. .+.|+.|++++|.+++.
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~-~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAE-TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHH-HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 2346777777777665433332221 2225667777777777776533333322 25777777777776522
Q ss_pred --CccccCCCCCCCEEeCCCCccCcc----CCccccCC-CCCCEEECcCCcC
Q 037539 458 --ITPKIGELTSLDFLDLSRNLFSGS----IPCSLSQL-SGLGVLDLSYNNL 502 (622)
Q Consensus 458 --~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~ls~N~l 502 (622)
....+..+++|+.+++++|.++.. ....+... +.|+++++.+|++
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 223445567777777777777743 33334444 5677777777764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.4e-17 Score=140.69 Aligned_cols=156 Identities=31% Similarity=0.534 Sum_probs=85.9
Q ss_pred CCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccE
Q 037539 314 HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 314 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~ 393 (622)
.+...+.|.+++|+++ .+|..++.+.+|+.|++++|++. ..|..++.+++|+.|+++-|++ ...|.+++ .+|.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfg-s~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFG-SFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccC-CCchhhh
Confidence 4455556666666666 44445556666666666666665 5555566666666666666665 45555554 4555555
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeC
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDL 473 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 473 (622)
|++..|++... .+|..|..+..|+.|+|++|.+. .+|..++++++|+.|.+
T Consensus 107 ldltynnl~e~----------------------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 107 LDLTYNNLNEN----------------------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSL 157 (264)
T ss_pred hhccccccccc----------------------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEee
Confidence 55555554421 33444445555555555555554 44444555555555555
Q ss_pred CCCccCccCCccccCCCCCCEEECcCCcCc
Q 037539 474 SRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 474 s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
.+|.+. .+|..++.+..|++|.+.+|+++
T Consensus 158 rdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 158 RDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 555554 44555555555555555555555
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1e-17 Score=141.55 Aligned_cols=152 Identities=33% Similarity=0.445 Sum_probs=116.5
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
.++.|.+|+|.++ ..|..+..+.+|+.|++.+|++. ..|..++.+++|+.|+++-|++. ..|..|+.+|.|+.||+.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 6888999999998 56777899999999999999999 77888999999999999999998 899999999999999999
Q ss_pred CCcccc-cCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCC
Q 037539 373 KNAIFG-EIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSR 451 (622)
Q Consensus 373 ~n~i~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 451 (622)
+|.+.. .+|..+| .+..|+.|++++|.+. .+|...+ .+++|+.|.+++|.+. .+|..++.++.|++|.+.+
T Consensus 111 ynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg-----~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 111 YNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVG-----KLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred ccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhh-----hhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 998854 3676666 6778888888877776 3333333 4555555555555554 4455555555555555555
Q ss_pred cccc
Q 037539 452 NHLT 455 (622)
Q Consensus 452 n~l~ 455 (622)
|+++
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 5554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.47 E-value=1.4e-13 Score=149.71 Aligned_cols=117 Identities=42% Similarity=0.692 Sum_probs=104.7
Q ss_pred CccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECc
Q 037539 419 LVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLS 498 (622)
Q Consensus 419 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 498 (622)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCC--cCCccCcccccCCcCCCCCCCCCCC
Q 037539 499 YNNLSGKIPSGT--QLQSFNASVYAGNLELCGLPLANMC 535 (622)
Q Consensus 499 ~N~l~~~~p~~~--~~~~l~~~~~~~n~~lc~~~~~~~C 535 (622)
+|++++.+|... .........+.+|+.+|+.|....|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 999999999752 1233456678999999987765556
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.36 E-value=6.4e-14 Score=132.40 Aligned_cols=140 Identities=21% Similarity=0.252 Sum_probs=93.9
Q ss_pred CCCCCEEEccCCcccccC----CCccCCCCCccEEeeeCCcCCCC----CCccccCCCCccEEEccCCcccccCchhHHh
Q 037539 315 FDRLFILNLANNRLSGKI----PDSMGFLNNIWTLNLHNNRLTGK----LPSPLRNFSQLRVLDLEKNAIFGEIPTWIGE 386 (622)
Q Consensus 315 ~~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 386 (622)
-+.|+.+...+|++.... ...|...+.|+.+.+++|.|... ....|..++.|++|||.+|-++......+..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 446777777777765332 23456667888888888877532 2246678888888888888775443333322
Q ss_pred ---hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCcc----chHHhhcccccceeecCCccc
Q 037539 387 ---SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA----IPEEIMDLVGLIALNLSRNHL 454 (622)
Q Consensus 387 ---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 454 (622)
.++.|+.|++++|.+.......+...+....|.|++|.+.+|.++.. +..++...+.|+.|+|++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 35678888888888887777777777777778888888888877632 223344566677777777766
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.29 E-value=7.9e-13 Score=125.11 Aligned_cols=241 Identities=21% Similarity=0.177 Sum_probs=165.6
Q ss_pred cccCcCCcEEeCCCCCCCC------------CCCccEEEcCCcccCCC-Cc-------chHhhcCCCCCCEEEccCCCCC
Q 037539 29 EVNIERLQELVLGLGKFFE------------TSNINTFFLNTVSVTKS-SD-------WFQVVAKLHSLKSLVLFSCALP 88 (622)
Q Consensus 29 ~~~l~~L~~L~L~~n~i~~------------~~~L~~L~Ls~n~l~~~-~~-------~~~~l~~l~~L~~L~Ls~n~l~ 88 (622)
...+..+++++|++|.|.. .++|+..++|+--.... .. +.+++..+++|++||||.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3367889999999998832 28888888887532222 22 2245667889999999999886
Q ss_pred CCCCCcchh----ccccCcccEEEccCCCCCCCCCchhhh-------cccccCCCccccEEEeecccCCCCC----chhh
Q 037539 89 PVNPSFIWH----FNLSTSIETLDLSDNNLPSSSVYPWLL-------NLKAFQHMVSLKSLYLSDSELEGGI----PKFF 153 (622)
Q Consensus 89 ~~~~~~~~l----~~l~~~L~~L~Ls~n~l~~~~~~~~~~-------~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l 153 (622)
...+ ..+ ..+ ..|++|.|.+|.+.. .--..++ .......-+.|+++..++|++.+.. ...|
T Consensus 106 ~~g~--~~l~~ll~s~-~~L~eL~L~N~Glg~-~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 106 PKGI--RGLEELLSSC-TDLEELYLNNCGLGP-EAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred ccch--HHHHHHHHhc-cCHHHHhhhcCCCCh-hHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 5544 222 344 889999999998863 1111110 1224566788999999999987533 3456
Q ss_pred cCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCC----C-CCCCCCCCEEEeecccCCccCcc
Q 037539 154 GNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIP----H-LGGFSSLEAWSLDVNCLNGTIDK 228 (622)
Q Consensus 154 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~----~-l~~l~~L~~L~L~~n~l~~~~~~ 228 (622)
...+.|+.+.++.|.|.......+... +..++. |+.|||..|.++.... . +..+++|++|++++|.+......
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~ea-l~~~~~-LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEA-LEHCPH-LEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHH-HHhCCc-ceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence 778899999999998865443333322 677777 9999999998875322 2 77888999999999988765444
Q ss_pred cc-----CCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCc
Q 037539 229 SL-----SQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFR 286 (622)
Q Consensus 229 ~l-----~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 286 (622)
+| ...|.|++|.+.+|.|+..... .+...+.. .+.|+.|++++|.+.
T Consensus 260 a~~~al~~~~p~L~vl~l~gNeIt~da~~----------~la~~~~e-k~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNEITRDAAL----------ALAACMAE-KPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHhccCCCCceeccCcchhHHHHHH----------HHHHHHhc-chhhHHhcCCccccc
Confidence 33 2478999999999988754311 22223333 468999999999984
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.25 E-value=1.7e-12 Score=120.06 Aligned_cols=132 Identities=28% Similarity=0.289 Sum_probs=108.9
Q ss_pred CCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcc
Q 037539 362 NFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDL 441 (622)
Q Consensus 362 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 441 (622)
....|+++|+++|.| ..+...+- -.|.++.|++++|.+..... +. .+++|+.|||++|.++ .+..+-..+
T Consensus 282 TWq~LtelDLS~N~I-~~iDESvK-L~Pkir~L~lS~N~i~~v~n--La-----~L~~L~~LDLS~N~Ls-~~~Gwh~KL 351 (490)
T KOG1259|consen 282 TWQELTELDLSGNLI-TQIDESVK-LAPKLRRLILSQNRIRTVQN--LA-----ELPQLQLLDLSGNLLA-ECVGWHLKL 351 (490)
T ss_pred hHhhhhhccccccch-hhhhhhhh-hccceeEEeccccceeeehh--hh-----hcccceEeecccchhH-hhhhhHhhh
Confidence 446799999999999 77777765 57999999999999884433 22 6899999999999998 555566678
Q ss_pred cccceeecCCccccCCCccccCCCCCCCEEeCCCCccCcc-CCccccCCCCCCEEECcCCcCccc
Q 037539 442 VGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS-IPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 442 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
.+.++|.|++|.+.+ ..+++.+.+|..||+++|+|... .-..++++|.|+.+.+.+|++.+.
T Consensus 352 GNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 899999999999864 56788899999999999999743 234689999999999999999854
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.21 E-value=2.5e-11 Score=126.43 Aligned_cols=183 Identities=38% Similarity=0.553 Sum_probs=141.1
Q ss_pred cCCCCCCEEEccCCcccccCCCccCCCC-CccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccc
Q 037539 313 LHFDRLFILNLANNRLSGKIPDSMGFLN-NIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNL 391 (622)
Q Consensus 313 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L 391 (622)
...+.++.|++.+|.++ .++....... +|+.|++++|.+. .++..+..+++|+.|++++|++ ..+|.... ..++|
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~-~~~~L 188 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL-SDLPKLLS-NLSNL 188 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchh-hhhhhhhh-hhhhh
Confidence 34467888888888888 4444455553 8999999999887 5556778889999999999998 67776654 47889
Q ss_pred cEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEE
Q 037539 392 IVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFL 471 (622)
Q Consensus 392 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 471 (622)
+.|++++|++.... .... .+..|+++.+++|.+. ..+..+..+..+..+.+.+|++. ..+..++.+++++.|
T Consensus 189 ~~L~ls~N~i~~l~-~~~~-----~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L 260 (394)
T COG4886 189 NNLDLSGNKISDLP-PEIE-----LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETL 260 (394)
T ss_pred hheeccCCccccCc-hhhh-----hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcccccccee
Confidence 99999999888433 3322 3556889999999654 56667888888998999999887 346778888889999
Q ss_pred eCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 472 DLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 472 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
++++|.++...+ +..+..++.|++++|.+....|..
T Consensus 261 ~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 261 DLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 999999985443 788889999999999988666654
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=4e-12 Score=123.66 Aligned_cols=211 Identities=19% Similarity=0.177 Sum_probs=110.4
Q ss_pred CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccc
Q 037539 49 SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKA 128 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 128 (622)
++|+.+.|.++.+...+.- .....|++++.||||.|-+....+.......+ ++|+.|+++.|++.. ...+..
T Consensus 121 kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqL-p~Le~LNls~Nrl~~-~~~s~~----- 192 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQL-PSLENLNLSSNRLSN-FISSNT----- 192 (505)
T ss_pred HhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhc-ccchhcccccccccC-Cccccc-----
Confidence 5566666666655544100 14556666666666666555443321223344 666666666666643 221111
Q ss_pred cCCCccccEEEeecccCCCCC-chhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccC--CC
Q 037539 129 FQHMVSLKSLYLSDSELEGGI-PKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPI--PH 205 (622)
Q Consensus 129 l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~--~~ 205 (622)
-..+++|+.|.++.|+++... ...+..+++|+.|++..|......... ..-+. .|++|||++|++.... +.
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-----~~i~~-~L~~LdLs~N~li~~~~~~~ 266 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-----TKILQ-TLQELDLSNNNLIDFDQGYK 266 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-----hhhhh-HHhhccccCCcccccccccc
Confidence 024566666777777666322 122345667777777776422111111 11122 2777777777665433 22
Q ss_pred CCCCCCCCEEEeecccCCccCcccc------CCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEE
Q 037539 206 LGGFSSLEAWSLDVNCLNGTIDKSL------SQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLN 279 (622)
Q Consensus 206 l~~l~~L~~L~L~~n~l~~~~~~~l------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~ 279 (622)
.+.++.|+.|+++.+.+..+..... ..+++|++|++..|++.... ++ ..+ ...++|+.|.
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~------------sl-~~l-~~l~nlk~l~ 332 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR------------SL-NHL-RTLENLKHLR 332 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc------------cc-chh-hccchhhhhh
Confidence 6667777777777776654322222 34567777777777764432 11 111 1234666666
Q ss_pred ccCCcCcc
Q 037539 280 LSNNHFRG 287 (622)
Q Consensus 280 l~~n~l~~ 287 (622)
+..|.+..
T Consensus 333 ~~~n~ln~ 340 (505)
T KOG3207|consen 333 ITLNYLNK 340 (505)
T ss_pred cccccccc
Confidence 66666654
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=8.6e-13 Score=132.14 Aligned_cols=169 Identities=30% Similarity=0.456 Sum_probs=80.1
Q ss_pred EEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCC
Q 037539 320 ILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSN 399 (622)
Q Consensus 320 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n 399 (622)
..|++.|++. ++|..+..+..|+.+.++.|.+. .+|..+..+..|+.||++.|++ ...|..++ .--|+.|-+++|
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC--~lpLkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL-SHLPDGLC--DLPLKVLIVSNN 153 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh-hcCChhhh--cCcceeEEEecC
Confidence 3444555444 44444444444555555555444 4444455555555555555554 44444444 123455555555
Q ss_pred cCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccC
Q 037539 400 KFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 400 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 479 (622)
+++ .+|..+. ..+.|..||.+.|.+. .+|..++.+.+|+.|++..|++. ..|+.+..+ .|..||+|.|+++
T Consensus 154 kl~-~lp~~ig-----~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 154 KLT-SLPEEIG-----LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred ccc-cCCcccc-----cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 544 2333332 3444455555555554 44444555555555555555554 233333322 2445555555554
Q ss_pred ccCCccccCCCCCCEEECcCCcCc
Q 037539 480 GSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 480 ~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
.+|-.|..+..|++|.|.+|++.
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC
Confidence 44445555555555555555554
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.17 E-value=1.7e-10 Score=125.80 Aligned_cols=114 Identities=30% Similarity=0.461 Sum_probs=104.1
Q ss_pred cccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCC
Q 037539 390 NLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD 469 (622)
Q Consensus 390 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 469 (622)
.++.|+|++|.+.+.+|..+. .+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|+.++.+++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~-----~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDIS-----KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCHHHh-----CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 478899999999999998776 799999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccCccCCccccCC-CCCCEEECcCCcCcccCCC
Q 037539 470 FLDLSRNLFSGSIPCSLSQL-SGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 470 ~L~Ls~n~l~~~~~~~l~~l-~~L~~L~ls~N~l~~~~p~ 508 (622)
.|+|++|.+++.+|..+... ..+..+++.+|+..|..|.
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 99999999999999988764 4678999999998876653
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=1.2e-11 Score=114.40 Aligned_cols=131 Identities=30% Similarity=0.472 Sum_probs=68.8
Q ss_pred CCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccE
Q 037539 314 HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 314 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~ 393 (622)
.++.|+++||++|.|+ .+.++..-.|.++.|++|+|.+... ..+..+++|+.||+++|.+ ..+..|-. .
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~L-s~~~Gwh~-K------ 350 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLL-AECVGWHL-K------ 350 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchh-HhhhhhHh-h------
Confidence 3444555555555555 3333444455555555555555422 1244555555555555554 33322222 3
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCC-CccccCCCCCCCEEe
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGP-ITPKIGELTSLDFLD 472 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~ 472 (622)
+-+.+.|.|++|.+. ....++.+-+|..||+++|++... ....++++|-|+++.
T Consensus 351 -----------------------LGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 351 -----------------------LGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred -----------------------hcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 444445555555443 223455666666677777766522 124567777777777
Q ss_pred CCCCccCc
Q 037539 473 LSRNLFSG 480 (622)
Q Consensus 473 Ls~n~l~~ 480 (622)
|.+|++.+
T Consensus 406 L~~NPl~~ 413 (490)
T KOG1259|consen 406 LTGNPLAG 413 (490)
T ss_pred hcCCCccc
Confidence 77777763
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=6.9e-12 Score=122.03 Aligned_cols=208 Identities=24% Similarity=0.201 Sum_probs=139.7
Q ss_pred cccEEeCCCCcCccccC-ccccCCCCCCEEEccCCccccc--CCCccCCCCCccEEeeeCCcCCCCCCc-cccCCCCccE
Q 037539 293 SLRFDDLSSNLLSGGLP-DCWLHFDRLFILNLANNRLSGK--IPDSMGFLNNIWTLNLHNNRLTGKLPS-PLRNFSQLRV 368 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~ 368 (622)
+|+.+.+.++.+..... .....|++++.|||+.|-+... +......+++|+.|+++.|++.....+ .-..++.|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 57778888777653221 3566788999999999876532 223456789999999999987632221 1125678889
Q ss_pred EEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccc-hHHhhccccccee
Q 037539 369 LDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAI-PEEIMDLVGLIAL 447 (622)
Q Consensus 369 L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 447 (622)
|.++.|.++-.--.++...+|+|+.|++..|.....-..... .+..|++|||++|++.+.. ....+.++.|+.|
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~-----i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK-----ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh-----hhhHHhhccccCCcccccccccccccccchhhh
Confidence 999999885443345555789999999998853222221222 4677889999998886322 2356788888899
Q ss_pred ecCCccccCCC-ccc-----cCCCCCCCEEeCCCCccCcc-CCccccCCCCCCEEECcCCcCccc
Q 037539 448 NLSRNHLTGPI-TPK-----IGELTSLDFLDLSRNLFSGS-IPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 448 ~L~~n~l~~~~-~~~-----l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
+++.|.+...- |+. ...+++|++|+++.|+|..- .-..+..+++|+.|.+..|.+..+
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 99988876432 222 34578899999999988521 122345667788888888888643
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=2.2e-11 Score=108.47 Aligned_cols=84 Identities=29% Similarity=0.365 Sum_probs=16.7
Q ss_pred cCCCCCCEEEccCCCCCCCCCCcchhc-cccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCc
Q 037539 72 AKLHSLKSLVLFSCALPPVNPSFIWHF-NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIP 150 (622)
Q Consensus 72 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~-~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 150 (622)
.+..++++|+|.+|.|+... .+. .+ .+|+.|++++|.|+.+ ..+..+++|++|++++|+|+. +.
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie----~L~~~l-~~L~~L~Ls~N~I~~l---------~~l~~L~~L~~L~L~~N~I~~-i~ 80 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE----NLGATL-DKLEVLDLSNNQITKL---------EGLPGLPRLKTLDLSNNRISS-IS 80 (175)
T ss_dssp ------------------------S--TT--TT--EEE-TTS--S-----------TT----TT--EEE--SS---S--C
T ss_pred cccccccccccccccccccc----chhhhh-cCCCEEECCCCCCccc---------cCccChhhhhhcccCCCCCCc-cc
Confidence 33445555666666555431 233 23 5555566666655431 123445555555555555553 22
Q ss_pred hhh-cCCccCcEeEeecCCCC
Q 037539 151 KFF-GNMCSLKKLRLSYNKLS 170 (622)
Q Consensus 151 ~~l-~~l~~L~~L~L~~n~i~ 170 (622)
+.+ ..+++|++|++++|+|.
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---
T ss_pred cchHHhCCcCCEEECcCCcCC
Confidence 222 23555555555555554
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=8.3e-11 Score=122.55 Aligned_cols=58 Identities=29% Similarity=0.385 Sum_probs=25.7
Q ss_pred cCEEEccCCcccccCCCCCCCC-CCCEEEeecccCCccCccccCCCCCCCEEEccCCCCc
Q 037539 189 LEGLYLRWNDFTGPIPHLGGFS-SLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLR 247 (622)
Q Consensus 189 L~~L~L~~n~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 247 (622)
++.|++.+|.++...+....+. +|+.|++++|.+. .++..+..+++|+.|++++|+++
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh
Confidence 5555555555443333333332 4555555554444 22233444444444444444443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=1.6e-10 Score=102.95 Aligned_cols=127 Identities=31% Similarity=0.334 Sum_probs=42.2
Q ss_pred CCCCCCEEEccCCcccccCCCccC-CCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhccccc
Q 037539 314 HFDRLFILNLANNRLSGKIPDSMG-FLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLI 392 (622)
Q Consensus 314 ~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~ 392 (622)
+...+++|+|++|.|+.. +.++ .+.+|+.|++++|.|+.. +.+..++.|++|++++|.| ..+...+...+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRI-SSISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCC-CccccchHHhCCcCC
Confidence 444677888888877743 2344 467788888888888743 3567778888888888887 555544444577888
Q ss_pred EeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccc---hHHhhcccccceeec
Q 037539 393 VLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAI---PEEIMDLVGLIALNL 449 (622)
Q Consensus 393 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L 449 (622)
.|++++|+|...... .....+++|+.|+|.+|++.... ...+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l----~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNEL----EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCC----GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHh----HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 888888877642211 11125677777777777765321 223455666666653
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=2.4e-12 Score=129.00 Aligned_cols=189 Identities=28% Similarity=0.400 Sum_probs=145.9
Q ss_pred CCcEEEccCCcCcccCCCC----cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeC
Q 037539 274 KLSYLNLSNNHFRGKLPDL----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHN 349 (622)
Q Consensus 274 ~L~~L~l~~n~l~~~~~~~----~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 349 (622)
--...+++.|++.....+. .|+.+.+..|.+. .+|.+++.+..|+++||+.|+++ ..|..++.++ |+.|.+++
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 3456688888887332222 6788888888876 67888888999999999999988 6677777666 89999999
Q ss_pred CcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCc
Q 037539 350 NRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNK 429 (622)
Q Consensus 350 n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 429 (622)
|+++ .+|..++..+.|..||.+.|.+ ..+|..+. ++.+|+.|+++.|.+... |..+. .-.|..||+++|+
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei-~slpsql~-~l~slr~l~vrRn~l~~l-p~El~------~LpLi~lDfScNk 222 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEI-QSLPSQLG-YLTSLRDLNVRRNHLEDL-PEELC------SLPLIRLDFSCNK 222 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhh-hhchHHhh-hHHHHHHHHHhhhhhhhC-CHHHh------CCceeeeecccCc
Confidence 9988 7788888888999999999998 77887777 688999999999988743 33332 3357889999999
Q ss_pred CCccchHHhhcccccceeecCCccccCCCcccc---CCCCCCCEEeCCCCc
Q 037539 430 LDGAIPEEIMDLVGLIALNLSRNHLTGPITPKI---GELTSLDFLDLSRNL 477 (622)
Q Consensus 430 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~Ls~n~ 477 (622)
+. .+|-+|.++..|++|-|.+|.+. ..|..+ +...-.++|+..-|+
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 98 78888999999999999999988 444433 234456777777774
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.90 E-value=2.2e-10 Score=119.45 Aligned_cols=174 Identities=30% Similarity=0.293 Sum_probs=88.1
Q ss_pred CCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCC-ccccCCCCccEEEccCCcccccCchhHHhhcccccEeec
Q 037539 318 LFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLP-SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSL 396 (622)
Q Consensus 318 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L 396 (622)
|+.|++++|.|+.. ..+..+..|+.+++++|.+...-+ . ...+.+++.+++.+|.+ ..+...- .+..+..+++
T Consensus 142 L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i-~~i~~~~--~~~~l~~~~l 215 (414)
T KOG0531|consen 142 LKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI-REIEGLD--LLKKLVLLSL 215 (414)
T ss_pred hhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch-hcccchH--HHHHHHHhhc
Confidence 44455555554422 223335555555555555542222 1 34556666666666665 2222111 2334444455
Q ss_pred CCCcCcccCChhhhHhHhhhcC--CccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCC
Q 037539 397 KSNKFHGNIPYQFENEYKSTLG--LVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLS 474 (622)
Q Consensus 397 ~~n~l~~~~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 474 (622)
..|.+...-+.. .+. +|+.+++++|++. ..+..+..+..+..|++.+|++.. ...+...+.+..+...
T Consensus 216 ~~n~i~~~~~l~-------~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~ 285 (414)
T KOG0531|consen 216 LDNKISKLEGLN-------ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLN 285 (414)
T ss_pred ccccceeccCcc-------cchhHHHHHHhcccCccc-cccccccccccccccchhhccccc--cccccccchHHHhccC
Confidence 666555322211 111 2666666666665 333455566667777777776653 3334455666666666
Q ss_pred CCccCcc---CCc-cccCCCCCCEEECcCCcCcccCC
Q 037539 475 RNLFSGS---IPC-SLSQLSGLGVLDLSYNNLSGKIP 507 (622)
Q Consensus 475 ~n~l~~~---~~~-~l~~l~~L~~L~ls~N~l~~~~p 507 (622)
.|.+... ... .....+.+..+.+.+|+.....+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 286 DNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cchhcchhhhhccccccccccccccccccCccccccc
Confidence 6665421 111 13455667777777777665443
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=1.8e-10 Score=120.21 Aligned_cols=57 Identities=37% Similarity=0.523 Sum_probs=30.4
Q ss_pred ccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCc
Q 037539 342 IWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFH 402 (622)
Q Consensus 342 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~ 402 (622)
|+.+++++|++. ..+..+..++.+..|++.+|.+.. +.. + ...+.+..+....+++.
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~-~~~-~-~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN-LEG-L-ERLPKLSELWLNDNKLA 290 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhccccc-ccc-c-cccchHHHhccCcchhc
Confidence 666777777665 333455566666777777666522 111 1 12344555555555544
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=2.7e-09 Score=118.94 Aligned_cols=149 Identities=26% Similarity=0.303 Sum_probs=79.9
Q ss_pred CCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCC--CCCCCCchhhhcccccCCCccccEEEeecccCCCCCch
Q 037539 74 LHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNN--LPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPK 151 (622)
Q Consensus 74 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 151 (622)
....+...+-+|.+..... -... ++|++|-+.+|. +. .++. ..|..++.|++|||++|.=.+.+|+
T Consensus 522 ~~~~rr~s~~~~~~~~~~~----~~~~-~~L~tLll~~n~~~l~--~is~-----~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAG----SSEN-PKLRTLLLQRNSDWLL--EISG-----EFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred hhheeEEEEeccchhhccC----CCCC-CccceEEEeecchhhh--hcCH-----HHHhhCcceEEEECCCCCccCcCCh
Confidence 3455555555554432211 1122 456666666664 32 1211 1245666666777666654456677
Q ss_pred hhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccC--CccCcc
Q 037539 152 FFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCL--NGTIDK 228 (622)
Q Consensus 152 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l--~~~~~~ 228 (622)
.++.+-+|++|++++..+. ..|..+.++. +|.+|++.++.....++. ...+++|++|.+..... +.....
T Consensus 590 ~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk------~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~ 662 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTGIS-HLPSGLGNLK------KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLK 662 (889)
T ss_pred HHhhhhhhhcccccCCCcc-ccchHHHHHH------hhheeccccccccccccchhhhcccccEEEeeccccccchhhHH
Confidence 7777777777777777666 4566644444 477777776655444455 44577777777765431 122222
Q ss_pred ccCCCCCCCEEEc
Q 037539 229 SLSQLSKLESLSL 241 (622)
Q Consensus 229 ~l~~l~~L~~L~l 241 (622)
.+..+.+|+.+..
T Consensus 663 el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 663 ELENLEHLENLSI 675 (889)
T ss_pred hhhcccchhhhee
Confidence 3344444544444
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=1.6e-09 Score=79.21 Aligned_cols=60 Identities=42% Similarity=0.497 Sum_probs=37.2
Q ss_pred ccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcC
Q 037539 443 GLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNL 502 (622)
Q Consensus 443 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l 502 (622)
+|++|++++|+++...++.|.++++|++|++++|.++...|+.|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666654455666666666666666666655556666666666666666653
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.82 E-value=7.9e-09 Score=115.22 Aligned_cols=129 Identities=23% Similarity=0.227 Sum_probs=79.6
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeeccc--CCCCCchhhcCCccCcEeEeecCCCCCcCchhhhh
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSE--LEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQN 179 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 179 (622)
...+...+-+|.+.. ++.. ..+++|++|-+.+|. +....++.|..++.|++||+++|.-.+..|..+.+
T Consensus 523 ~~~rr~s~~~~~~~~--~~~~-------~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH--IAGS-------SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred hheeEEEEeccchhh--ccCC-------CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 455666666666543 1111 244567777777775 44444455677777777777776655667777555
Q ss_pred ccccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCC
Q 037539 180 LSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNS 245 (622)
Q Consensus 180 l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 245 (622)
+. +|++|+++++.+...+..++++..|.+|++..+.....++.....+++|++|.+..-.
T Consensus 594 Li------~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 594 LV------HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hh------hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 54 4777777777776433337777777777777665544445555557777777665543
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=3.2e-09 Score=77.70 Aligned_cols=61 Identities=38% Similarity=0.490 Sum_probs=50.0
Q ss_pred CCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCcc
Q 037539 418 GLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLF 478 (622)
Q Consensus 418 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 478 (622)
|+|++|++++|+++...+..|.++++|++|++++|.++...++.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888866667888888888888888888877777888888888888888875
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.67 E-value=6.9e-09 Score=95.17 Aligned_cols=246 Identities=19% Similarity=0.129 Sum_probs=156.4
Q ss_pred cCcCCcEEeCCCCCCCCC------------CCccEEEcCCcccCCC-Cc-------chHhhcCCCCCCEEEccCCCCCCC
Q 037539 31 NIERLQELVLGLGKFFET------------SNINTFFLNTVSVTKS-SD-------WFQVVAKLHSLKSLVLFSCALPPV 90 (622)
Q Consensus 31 ~l~~L~~L~L~~n~i~~~------------~~L~~L~Ls~n~l~~~-~~-------~~~~l~~l~~L~~L~Ls~n~l~~~ 90 (622)
-+..+..+|||+|.|..- .+|+..+++.--.... .. ..+++-+||+|+.++||.|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 377889999999998443 8888888887533322 22 235678899999999999988776
Q ss_pred CCC--cchhccccCcccEEEccCCCCCCCC---Cchhh---hcccccCCCccccEEEeecccCCCCCc----hhhcCCcc
Q 037539 91 NPS--FIWHFNLSTSIETLDLSDNNLPSSS---VYPWL---LNLKAFQHMVSLKSLYLSDSELEGGIP----KFFGNMCS 158 (622)
Q Consensus 91 ~~~--~~~l~~l~~~L~~L~Ls~n~l~~~~---~~~~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~ 158 (622)
.|. ...+..- +.|++|.+++|.+..+. +...+ +..+....-|.|++.....|++..-.. ..+..-.+
T Consensus 108 ~~e~L~d~is~~-t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSS-TDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcC-CCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 551 1233445 89999999999886311 11111 112244567889999999999874221 12344468
Q ss_pred CcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-----CCCCCCCCEEEeecccCCccCcccc---
Q 037539 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-----LGGFSSLEAWSLDVNCLNGTIDKSL--- 230 (622)
Q Consensus 159 L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-----l~~l~~L~~L~L~~n~l~~~~~~~l--- 230 (622)
|+.+.+..|.|.-.....+....+..+.+ |+.|||..|.++..... +...+.|++|.+.+|-++.....++
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~-LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHS-LEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCc-ceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 99999999987644333222221333455 99999999988753322 5566778999998888765443322
Q ss_pred -C--CCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCc
Q 037539 231 -S--QLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFR 286 (622)
Q Consensus 231 -~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 286 (622)
. ..|+|..|...+|.+.+..... ..++...-...|-|..|.+.+|.+.
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~i~~--------~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGIILD--------ISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhhcCCCccccccchhhhcCceeee--------echhhhhhcccHHHHHHHHccCcch
Confidence 1 3578888888888765322111 1233333344455666666666654
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.7e-09 Score=100.34 Aligned_cols=159 Identities=25% Similarity=0.206 Sum_probs=74.4
Q ss_pred cccEEeCCCCcCcc-ccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCc-CCCC-CCccccCCCCccEE
Q 037539 293 SLRFDDLSSNLLSG-GLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNR-LTGK-LPSPLRNFSQLRVL 369 (622)
Q Consensus 293 ~L~~L~ls~n~l~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~-~~~~l~~l~~L~~L 369 (622)
.++++||++..++. .+...+..|..|+.|.+.++++++.+...++.-.+|+.|+++.+. ++.. ..-.+..|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 36666666665553 233345556666666666666665555555566666666666554 2211 11234456666666
Q ss_pred EccCCcccccCchh-HHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCc-CCccchHHhhccccccee
Q 037539 370 DLEKNAIFGEIPTW-IGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNK-LDGAIPEEIMDLVGLIAL 447 (622)
Q Consensus 370 ~L~~n~i~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 447 (622)
+++.|.+..+.... +..--++|+.|+++++.-.-. ..-.......+|+|.+|||++|. ++......|.+++.|++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~--~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ--KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh--hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 66666553332111 111124555556555431100 00011122245555555555442 222222333444444444
Q ss_pred ecCCcc
Q 037539 448 NLSRNH 453 (622)
Q Consensus 448 ~L~~n~ 453 (622)
.++.|.
T Consensus 344 SlsRCY 349 (419)
T KOG2120|consen 344 SLSRCY 349 (419)
T ss_pred ehhhhc
Confidence 444444
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.9e-09 Score=98.89 Aligned_cols=179 Identities=20% Similarity=0.156 Sum_probs=134.5
Q ss_pred CCCEEEccCCccccc-CCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCc-ccccCchhHHhhcccccEe
Q 037539 317 RLFILNLANNRLSGK-IPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNA-IFGEIPTWIGESLQNLIVL 394 (622)
Q Consensus 317 ~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~L 394 (622)
.|+.+||++..|+.. .-..+..+.+|+.|.+.++++.+.+...+....+|+.|+++.+. ++.....-++++++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 599999999988732 22345678999999999999998888889999999999999874 4333344566789999999
Q ss_pred ecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcC--C-ccchHHhhcccccceeecCCcc-ccCCCccccCCCCCCCE
Q 037539 395 SLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKL--D-GAIPEEIMDLVGLIALNLSRNH-LTGPITPKIGELTSLDF 470 (622)
Q Consensus 395 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~ 470 (622)
+++-|.+....-. .....--+.|+.|+|+|+.- . ..+..-...+++|..|||++|. ++......|.+++.|++
T Consensus 266 NlsWc~l~~~~Vt---v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 266 NLSWCFLFTEKVT---VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred CchHhhccchhhh---HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 9999987654422 12222457899999998742 1 1223334689999999999986 45444456778999999
Q ss_pred EeCCCCccCccCCcc---ccCCCCCCEEECcCC
Q 037539 471 LDLSRNLFSGSIPCS---LSQLSGLGVLDLSYN 500 (622)
Q Consensus 471 L~Ls~n~l~~~~~~~---l~~l~~L~~L~ls~N 500 (622)
|.++.|.. ++|.. +...|+|.+||+.|+
T Consensus 343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 99999964 44543 577899999998776
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.58 E-value=2.8e-09 Score=110.17 Aligned_cols=179 Identities=31% Similarity=0.292 Sum_probs=120.2
Q ss_pred CccccCCCCCCEEEccCCcccccCCCccCCC-CCccEEeeeCCcCC----------CCCCccccCCCCccEEEccCCccc
Q 037539 309 PDCWLHFDRLFILNLANNRLSGKIPDSMGFL-NNIWTLNLHNNRLT----------GKLPSPLRNFSQLRVLDLEKNAIF 377 (622)
Q Consensus 309 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~----------~~~~~~l~~l~~L~~L~L~~n~i~ 377 (622)
|-.+..+..|+.|.+.++.+... ..+..+ ..|++|. ..|.+. +.+..++. .-.|.+.+.++|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L- 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRL- 176 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhH-
Confidence 45667788899999998887631 122111 1333332 122221 12222222 23578888888887
Q ss_pred ccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchH-HhhcccccceeecCCccccC
Q 037539 378 GEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPE-EIMDLVGLIALNLSRNHLTG 456 (622)
Q Consensus 378 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~ 456 (622)
..+...+- -++.|+.|+|++|+++... +...++.|++|||++|.+. .+|. ....+. |..|++++|.++.
T Consensus 177 ~~mD~SLq-ll~ale~LnLshNk~~~v~-------~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t 246 (1096)
T KOG1859|consen 177 VLMDESLQ-LLPALESLNLSHNKFTKVD-------NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT 246 (1096)
T ss_pred HhHHHHHH-HHHHhhhhccchhhhhhhH-------HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh
Confidence 55555544 5789999999999988332 3337899999999999998 3332 233344 9999999999885
Q ss_pred CCccccCCCCCCCEEeCCCCccCccC-CccccCCCCCCEEECcCCcCcc
Q 037539 457 PITPKIGELTSLDFLDLSRNLFSGSI-PCSLSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 457 ~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~ls~N~l~~ 504 (622)
...+.++.+|+.||+++|-+.+.- -.-+..+..|+.|.|.||++.|
T Consensus 247 --L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 247 --LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred --hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 556788999999999999887531 1224566788999999999975
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=1.7e-08 Score=104.66 Aligned_cols=181 Identities=26% Similarity=0.258 Sum_probs=118.4
Q ss_pred CCccCCCCCccEEeeeCCcCCCCCCccccCC-CCccEEEccCCcc----------cccCchhHHhhcccccEeecCCCcC
Q 037539 333 PDSMGFLNNIWTLNLHNNRLTGKLPSPLRNF-SQLRVLDLEKNAI----------FGEIPTWIGESLQNLIVLSLKSNKF 401 (622)
Q Consensus 333 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l-~~L~~L~L~~n~i----------~~~~~~~~~~~l~~L~~L~L~~n~l 401 (622)
|-.+..+.+|+.|.+.+|.+.. ...+..+ ..|++|--. |.+ .+++....- -..|.+.+.+.|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPV--WNKLATASFSYNRL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchh--hhhHhhhhcchhhH
Confidence 4445567788888888888763 1111111 123333222 111 011111110 13577778888877
Q ss_pred cccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCcc
Q 037539 402 HGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS 481 (622)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 481 (622)
. .....+. -++.++.|||++|+++.. +.+..++.|++|||++|.+....--...++. |+.|.+++|.++..
T Consensus 177 ~-~mD~SLq-----ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 177 V-LMDESLQ-----LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL 247 (1096)
T ss_pred H-hHHHHHH-----HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh
Confidence 6 2222222 588999999999999733 3788999999999999999843333444555 99999999999844
Q ss_pred CCccccCCCCCCEEECcCCcCcccCC--CCCcCCccCcccccCCcCCCCC
Q 037539 482 IPCSLSQLSGLGVLDLSYNNLSGKIP--SGTQLQSFNASVYAGNLELCGL 529 (622)
Q Consensus 482 ~~~~l~~l~~L~~L~ls~N~l~~~~p--~~~~~~~l~~~~~~~n~~lc~~ 529 (622)
..+.++.+|+.||+++|-+.+--. ..+.+..+..+.+.|||.-|.+
T Consensus 248 --~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 248 --RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred --hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 357899999999999998875321 1234555666778999988854
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.41 E-value=7.7e-08 Score=88.41 Aligned_cols=238 Identities=14% Similarity=0.053 Sum_probs=166.1
Q ss_pred cccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCC------------------CCCCccEEEcCCcccCCC-
Q 037539 4 KHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFF------------------ETSNINTFFLNTVSVTKS- 64 (622)
Q Consensus 4 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~------------------~~~~L~~L~Ls~n~l~~~- 64 (622)
..+.++++|++.+.++....+.. .+.+-.+|+..+++.-... ++|+|+..+||.|.+...
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~-~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCN-VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHH-HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 35667899999987776655553 2335678888888875432 229999999999998877
Q ss_pred -CcchHhhcCCCCCCEEEccCCCCCCCCCC-----------cchhccccCcccEEEccCCCCCCCCCchhhhcccccCCC
Q 037539 65 -SDWFQVVAKLHSLKSLVLFSCALPPVNPS-----------FIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHM 132 (622)
Q Consensus 65 -~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-----------~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l 132 (622)
+.....+++-+.|++|.+++|.+...... ..-..+- +.|++.....|++.. .|..... ..+..-
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~k-p~Le~vicgrNRlen--gs~~~~a-~~l~sh 184 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADK-PKLEVVICGRNRLEN--GSKELSA-ALLESH 184 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccC-CCceEEEeccchhcc--CcHHHHH-HHHHhh
Confidence 34445678889999999999987543220 0111234 789999999999974 3322211 123444
Q ss_pred ccccEEEeecccCCCCCc-----hhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC--
Q 037539 133 VSLKSLYLSDSELEGGIP-----KFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-- 205 (622)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-- 205 (622)
.+|+.+.+..|.|..... ..+..+.+|+.||+..|.++......++.+ +..++. |++|.+..|-++.....
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a-l~~W~~-lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA-LCEWNL-LRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH-hcccch-hhhccccchhhccccHHHH
Confidence 799999999998763321 234567899999999999987777666665 666677 99999999988754432
Q ss_pred ---C--CCCCCCCEEEeecccCCccCccc-----c--CCCCCCCEEEccCCCCcc
Q 037539 206 ---L--GGFSSLEAWSLDVNCLNGTIDKS-----L--SQLSKLESLSLDGNSLRA 248 (622)
Q Consensus 206 ---l--~~l~~L~~L~L~~n~l~~~~~~~-----l--~~l~~L~~L~l~~n~l~~ 248 (622)
| ...|+|..|....|.+.+.+... + ..+|-|..|.+.+|.+..
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred HHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 2 24578888989888775433222 1 257778888888888764
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1.7e-07 Score=87.28 Aligned_cols=186 Identities=19% Similarity=0.185 Sum_probs=100.6
Q ss_pred CccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCC-CCCccccCCCCccEEEccCCcccccC---chhH
Q 037539 309 PDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG-KLPSPLRNFSQLRVLDLEKNAIFGEI---PTWI 384 (622)
Q Consensus 309 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~l~~l~~L~~L~L~~n~i~~~~---~~~~ 384 (622)
...+.++|.|+.|+++.|.+...+-..-....+|+.|.|.+..+.- .....+..+|.++.|+++.|.. ..+ ...+
T Consensus 90 ~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~-rq~n~Dd~c~ 168 (418)
T KOG2982|consen 90 GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL-RQLNLDDNCI 168 (418)
T ss_pred HHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh-hhhccccccc
Confidence 3345567777777777777653322111345577777777766541 2234455667777777777733 110 0011
Q ss_pred HhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccc-hHHhhcccccceeecCCccccCCC-cccc
Q 037539 385 GESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAI-PEEIMDLVGLIALNLSRNHLTGPI-TPKI 462 (622)
Q Consensus 385 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~l 462 (622)
...-+.++++.+..|...... -........|++..+-+..|++.+.. .+.+..++.+..|+|+.|++.... .+.+
T Consensus 169 e~~s~~v~tlh~~~c~~~~w~---~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~L 245 (418)
T KOG2982|consen 169 EDWSTEVLTLHQLPCLEQLWL---NKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDAL 245 (418)
T ss_pred cccchhhhhhhcCCcHHHHHH---HHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHH
Confidence 111234445555444322100 00111124566777777777775432 234556677777888888776422 2566
Q ss_pred CCCCCCCEEeCCCCccCccCCcc------ccCCCCCCEEECc
Q 037539 463 GELTSLDFLDLSRNLFSGSIPCS------LSQLSGLGVLDLS 498 (622)
Q Consensus 463 ~~l~~L~~L~Ls~n~l~~~~~~~------l~~l~~L~~L~ls 498 (622)
..+++|.-|.+++|++.+..... ++.++.++.|+=+
T Consensus 246 n~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 246 NGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 77788888888888776543221 3566666666533
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=2.2e-07 Score=86.63 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=51.9
Q ss_pred CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchh-ccccCcccEEEccCCCCCCCCCchhhhccc
Q 037539 49 SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWH-FNLSTSIETLDLSDNNLPSSSVYPWLLNLK 127 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l-~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 127 (622)
+.++++||.+|.|++..+++.-+.++|.|++|+|+.|++...+. .+ ... .+|++|-|.+..+.- ... -.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~---~lp~p~-~nl~~lVLNgT~L~w-~~~-----~s 140 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK---SLPLPL-KNLRVLVLNGTGLSW-TQS-----TS 140 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc---cCcccc-cceEEEEEcCCCCCh-hhh-----hh
Confidence 67777777777777665555567777777777777777765433 22 234 677777777766543 111 11
Q ss_pred ccCCCccccEEEeecc
Q 037539 128 AFQHMVSLKSLYLSDS 143 (622)
Q Consensus 128 ~l~~l~~L~~L~L~~n 143 (622)
.+..+|.++.|.++.|
T Consensus 141 ~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhcchhhhhhhhccc
Confidence 2345666666666666
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.26 E-value=4.1e-08 Score=95.65 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=15.1
Q ss_pred CCCccEEeeeCCcCC-CCCCccccCCCCccEEEccCC
Q 037539 339 LNNIWTLNLHNNRLT-GKLPSPLRNFSQLRVLDLEKN 374 (622)
Q Consensus 339 l~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~L~~n 374 (622)
+..|+.+.+++++.. ....+.+..+++|+.+++-++
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 344444444444432 112223344444444444444
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.24 E-value=1.1e-07 Score=78.32 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=56.1
Q ss_pred cCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEE
Q 037539 417 LGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLD 496 (622)
Q Consensus 417 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 496 (622)
...|+..+|++|.+....+.--...+..++|++++|.++ .+|+.+..++.|+.|+++.|++. ..|..+..+.++..||
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 445556666677666333322234456777777777776 45555777777777777777776 5556666666677777
Q ss_pred CcCCcCcccCCCC
Q 037539 497 LSYNNLSGKIPSG 509 (622)
Q Consensus 497 ls~N~l~~~~p~~ 509 (622)
..+|.+. .+|.+
T Consensus 130 s~~na~~-eid~d 141 (177)
T KOG4579|consen 130 SPENARA-EIDVD 141 (177)
T ss_pred CCCCccc-cCcHH
Confidence 7776665 45544
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.23 E-value=2.1e-06 Score=75.94 Aligned_cols=121 Identities=20% Similarity=0.180 Sum_probs=96.1
Q ss_pred CcEEeCCCCCCCCC-------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEE
Q 037539 35 LQELVLGLGKFFET-------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETL 107 (622)
Q Consensus 35 L~~L~L~~n~i~~~-------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L 107 (622)
=+.++|.+.++... .+...+||++|++...+ .|..++.|.+|.|.+|.|+...| .+..+.++|+.|
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~----~lp~l~rL~tLll~nNrIt~I~p---~L~~~~p~l~~L 93 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD----NLPHLPRLHTLLLNNNRITRIDP---DLDTFLPNLKTL 93 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcc----cCCCccccceEEecCCcceeecc---chhhhccccceE
Confidence 45677777666333 67889999999988776 47889999999999999998877 455555889999
Q ss_pred EccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCc---hhhcCCccCcEeEeecCC
Q 037539 108 DLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIP---KFFGNMCSLKKLRLSYNK 168 (622)
Q Consensus 108 ~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~ 168 (622)
.|.+|.|.. ++++..+..+|+|++|.+-+|.++..-- ..+..+++|+.||.++-.
T Consensus 94 ~LtnNsi~~------l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 94 ILTNNSIQE------LGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred EecCcchhh------hhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999999975 4667778899999999999998874322 246788999999987654
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.20 E-value=1.5e-07 Score=77.61 Aligned_cols=90 Identities=24% Similarity=0.266 Sum_probs=48.3
Q ss_pred cCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEE
Q 037539 417 LGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLD 496 (622)
Q Consensus 417 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 496 (622)
.+.++.++|++|.+. .+|+.+..++.|+.|+++.|.+. ..|..+..+.+|-.|+..+|.+..+.-+.| .-...-..+
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~-~s~~~al~~ 152 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLF-YSSLPALIK 152 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHh-ccccHHHHH
Confidence 345555555555555 55555666666666666666665 445555556666666666666553322211 111222234
Q ss_pred CcCCcCcccCCCC
Q 037539 497 LSYNNLSGKIPSG 509 (622)
Q Consensus 497 ls~N~l~~~~p~~ 509 (622)
+.++++.+..|..
T Consensus 153 lgnepl~~~~~~k 165 (177)
T KOG4579|consen 153 LGNEPLGDETKKK 165 (177)
T ss_pred hcCCcccccCccc
Confidence 4666776666654
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.05 E-value=8e-06 Score=72.30 Aligned_cols=60 Identities=27% Similarity=0.434 Sum_probs=33.1
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCC
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLS 170 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 170 (622)
.+...+||++|.+.. +..|..++.|.+|.+++|+|+.+.|.--..+++|+.|.|.+|+|.
T Consensus 42 d~~d~iDLtdNdl~~---------l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK---------LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccceecccccchhh---------cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 455566666666532 333455566666666666666554444344555666666665543
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.99 E-value=4e-07 Score=88.93 Aligned_cols=132 Identities=21% Similarity=0.163 Sum_probs=62.8
Q ss_pred CCCCCCEEEccCCc-ccccCCCcc-CCCCCccEEeeeCCcCCC--CCCccccCCCCccEEEccCCcccccC----chhHH
Q 037539 314 HFDRLFILNLANNR-LSGKIPDSM-GFLNNIWTLNLHNNRLTG--KLPSPLRNFSQLRVLDLEKNAIFGEI----PTWIG 385 (622)
Q Consensus 314 ~~~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~i~~--~~~~~l~~l~~L~~L~L~~n~i~~~~----~~~~~ 385 (622)
++.+|+.|.++.|+ +++.....+ .+.+.|+.+++.++.... .+...-.+++.|++|.+++|....+- .....
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 34555555555553 332222222 234556666665554321 11222235666777777666532211 00111
Q ss_pred hhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC-cc-chHHhhcccccceeec
Q 037539 386 ESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD-GA-IPEEIMDLVGLIALNL 449 (622)
Q Consensus 386 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~-~~~~~~~l~~L~~L~L 449 (622)
.+...|+.+.+++++....- .......+++|+.+++-+++-. .. +...-.+++++++..+
T Consensus 398 c~~~~l~~lEL~n~p~i~d~----~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDA----TLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ccccccceeeecCCCCchHH----HHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 14556777777777654221 1122236777777777776532 12 2222345666665544
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=6e-05 Score=75.93 Aligned_cols=139 Identities=17% Similarity=0.251 Sum_probs=80.9
Q ss_pred hhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecc-cCCCC
Q 037539 70 VVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDS-ELEGG 148 (622)
Q Consensus 70 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~ 148 (622)
.+..++++++|++++|.++.. | .++.+|++|.+++|.--. .+|..+ .++|++|++++| .+. .
T Consensus 47 r~~~~~~l~~L~Is~c~L~sL-P------~LP~sLtsL~Lsnc~nLt-sLP~~L--------P~nLe~L~Ls~Cs~L~-s 109 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESL-P------VLPNELTEITIENCNNLT-TLPGSI--------PEGLEKLTVCHCPEIS-G 109 (426)
T ss_pred HHHHhcCCCEEEeCCCCCccc-C------CCCCCCcEEEccCCCCcc-cCCchh--------hhhhhheEccCccccc-c
Confidence 355678889999998876653 2 455789999998864322 444322 257888888887 444 3
Q ss_pred CchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCC-CC-CCCCEEEeecccCCccC
Q 037539 149 IPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLG-GF-SSLEAWSLDVNCLNGTI 226 (622)
Q Consensus 149 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~-~l-~~L~~L~L~~n~l~~~~ 226 (622)
+| .+|+.|+++.+.... +..+|.+|+.|.+.+++.... ..+. .+ ++|++|++++|... ..
T Consensus 110 LP------~sLe~L~L~~n~~~~----------L~~LPssLk~L~I~~~n~~~~-~~lp~~LPsSLk~L~Is~c~~i-~L 171 (426)
T PRK15386 110 LP------ESVRSLEIKGSATDS----------IKNVPNGLTSLSINSYNPENQ-ARIDNLISPSLKTLSLTGCSNI-IL 171 (426)
T ss_pred cc------cccceEEeCCCCCcc----------cccCcchHhheeccccccccc-cccccccCCcccEEEecCCCcc-cC
Confidence 44 346777776654432 333444577777754321100 0011 11 56777777777654 23
Q ss_pred ccccCCCCCCCEEEccCCC
Q 037539 227 DKSLSQLSKLESLSLDGNS 245 (622)
Q Consensus 227 ~~~l~~l~~L~~L~l~~n~ 245 (622)
|..+. .+|+.|+++.+.
T Consensus 172 P~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 172 PEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred ccccc--ccCcEEEecccc
Confidence 33333 467777776553
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.96 E-value=3.8e-06 Score=91.70 Aligned_cols=134 Identities=15% Similarity=0.186 Sum_probs=96.9
Q ss_pred CcCCcEEeCCCCCCCC----------CCCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhcccc
Q 037539 32 IERLQELVLGLGKFFE----------TSNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLS 101 (622)
Q Consensus 32 l~~L~~L~L~~n~i~~----------~~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 101 (622)
-.+|++||+++..... +|+|+.|.+++-.+... ++.+...++|+|..||+|+++++.. .++.++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~L- 194 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNL----SGISRL- 194 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCc----HHHhcc-
Confidence 4688899998865422 19999999988776555 2344778899999999999988776 578888
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCC--c----hhhcCCccCcEeEeecCCCCCcCch
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGI--P----KFFGNMCSLKKLRLSYNKLSGQYSQ 175 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~L~~n~i~~~~~~ 175 (622)
++|++|.+.+=.+.. . ..+..+-++++|++||+|........ . +.-..+|+|+.||.|++.+.+..-.
T Consensus 195 knLq~L~mrnLe~e~--~----~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFES--Y----QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred ccHHHHhccCCCCCc--h----hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 999999888777653 1 23345578899999999987655322 1 1223588999999998887765544
Q ss_pred hh
Q 037539 176 VI 177 (622)
Q Consensus 176 ~~ 177 (622)
.+
T Consensus 269 ~l 270 (699)
T KOG3665|consen 269 EL 270 (699)
T ss_pred HH
Confidence 43
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=6e-05 Score=75.90 Aligned_cols=136 Identities=17% Similarity=0.170 Sum_probs=66.2
Q ss_pred cCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCC-cccccCchhHHhhcccc
Q 037539 313 LHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKN-AIFGEIPTWIGESLQNL 391 (622)
Q Consensus 313 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n-~i~~~~~~~~~~~l~~L 391 (622)
..+.+++.|++++|.++ .+|. -.++|++|.+++|.-....|+.+ .++|++|++++| .+ ..+| ++|
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L-~sLP-------~sL 114 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI-SGLP-------ESV 114 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc-cccc-------ccc
Confidence 34566677777777665 3341 13357777776654333445433 246777777766 33 3333 345
Q ss_pred cEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC--ccchHHhhcccccceeecCCccccCCCccccCCCCCCC
Q 037539 392 IVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD--GAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD 469 (622)
Q Consensus 392 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 469 (622)
+.|++.++.... ++. -.++|+.|.+.+++.. ..+|.. -.++|++|++++|... ..|+.+. .+|+
T Consensus 115 e~L~L~~n~~~~-L~~--------LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk 180 (426)
T PRK15386 115 RSLEIKGSATDS-IKN--------VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQ 180 (426)
T ss_pred ceEEeCCCCCcc-ccc--------CcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCc
Confidence 555565544321 100 1234555555432211 011100 0146666777666654 2333332 4666
Q ss_pred EEeCCCC
Q 037539 470 FLDLSRN 476 (622)
Q Consensus 470 ~L~Ls~n 476 (622)
.|+++.+
T Consensus 181 ~L~ls~n 187 (426)
T PRK15386 181 SITLHIE 187 (426)
T ss_pred EEEeccc
Confidence 6666655
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2.5e-05 Score=52.18 Aligned_cols=38 Identities=32% Similarity=0.483 Sum_probs=22.7
Q ss_pred ccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCC
Q 037539 133 VSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSG 171 (622)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 171 (622)
++|++|++++|+|+ .+|..++++++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 35666666666666 344456666666777776666664
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=2.5e-05 Score=85.41 Aligned_cols=135 Identities=22% Similarity=0.278 Sum_probs=68.6
Q ss_pred CCccEEEccCCcc-cccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhccc
Q 037539 364 SQLRVLDLEKNAI-FGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLV 442 (622)
Q Consensus 364 ~~L~~L~L~~n~i-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 442 (622)
.+|++||+++... ....|..++..+|+|+.|.+++-.+.... |. ....++|+|..||+|+++++.. .++++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d---F~-~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD---FS-QLCASFPNLRSLDISGTNISNL--SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh---HH-HHhhccCccceeecCCCCccCc--HHHhccc
Confidence 3455555555432 22233344445566666666655443221 11 1122566666666666666522 4566666
Q ss_pred ccceeecCCccccC-CCccccCCCCCCCEEeCCCCccCccC------CccccCCCCCCEEECcCCcCcc
Q 037539 443 GLIALNLSRNHLTG-PITPKIGELTSLDFLDLSRNLFSGSI------PCSLSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 443 ~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~------~~~l~~l~~L~~L~ls~N~l~~ 504 (622)
+|++|.+.+=.+.. .....+.++++|+.||+|..+..... -++-..+|.|+.||.|++.+..
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 66666665544432 11223455666666666655443211 1122346667777777665543
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=2.6e-05 Score=52.05 Aligned_cols=36 Identities=39% Similarity=0.618 Sum_probs=16.2
Q ss_pred ccceeecCCccccCCCccccCCCCCCCEEeCCCCccC
Q 037539 443 GLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 443 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 479 (622)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444555555554 23333445555555555555544
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=7.5e-06 Score=75.93 Aligned_cols=105 Identities=22% Similarity=0.236 Sum_probs=83.8
Q ss_pred CCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCch-hHHhhcccccE
Q 037539 315 FDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPT-WIGESLQNLIV 393 (622)
Q Consensus 315 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~-~~~~~l~~L~~ 393 (622)
+.+.++|++-+|.++++ .....++.|+.|.||-|+|+.. ..+..|++|++|+|..|.| ..+.. ....++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhh
Confidence 44677888888888765 3456789999999999999855 4588999999999999998 44432 33457899999
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEE
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLD 424 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~ 424 (622)
|+|..|+..+..+..........+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999999998888888777777899999876
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.37 E-value=0.00062 Score=58.26 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=43.7
Q ss_pred ccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcc
Q 037539 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQ 389 (622)
Q Consensus 310 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~ 389 (622)
.+|.++++|+.+.+.. .+.......|..+.+|+.+.+.++ +.......|..+++|+.+.+.+ .+ ..++...+..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~-~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NL-KSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cc-cccccccccccc
Confidence 4566666777777764 455455566666767777777664 5545555666776777777755 32 344455554466
Q ss_pred cccEeecCCC
Q 037539 390 NLIVLSLKSN 399 (622)
Q Consensus 390 ~L~~L~L~~n 399 (622)
+|+.+++..+
T Consensus 82 ~l~~i~~~~~ 91 (129)
T PF13306_consen 82 NLKNIDIPSN 91 (129)
T ss_dssp TECEEEETTT
T ss_pred cccccccCcc
Confidence 6666666543
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.27 E-value=0.00062 Score=58.29 Aligned_cols=62 Identities=11% Similarity=0.172 Sum_probs=29.2
Q ss_pred CccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCC
Q 037539 334 DSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKS 398 (622)
Q Consensus 334 ~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~ 398 (622)
..|..+.+|+.+.+.. .+.......|..+++|+.+.+.++ + ..++...+.++++++.+.+.+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~-~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-L-TSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-T-SCE-TTTTTT-TT-EEEEETS
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-c-cccceeeeecccccccccccc
Confidence 3455666666666654 344444556666666666666654 3 455555555555566666643
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.23 E-value=0.00032 Score=65.15 Aligned_cols=89 Identities=26% Similarity=0.291 Sum_probs=46.8
Q ss_pred ccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCC--cCCCCCCccccCCCCccEEEccCCcccccCchhH--H
Q 037539 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNN--RLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWI--G 385 (622)
Q Consensus 310 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~--~ 385 (622)
.....+..|+.|.+.+..++.. ..+..+++|++|.++.| .+.+.++-....+|+|++|++++|+|. .+ ..+ .
T Consensus 37 gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~l-stl~pl 112 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-DL-STLRPL 112 (260)
T ss_pred cccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-cc-cccchh
Confidence 3334445566666655555422 23445666777777777 444444444445567777777777662 11 111 1
Q ss_pred hhcccccEeecCCCcCc
Q 037539 386 ESLQNLIVLSLKSNKFH 402 (622)
Q Consensus 386 ~~l~~L~~L~L~~n~l~ 402 (622)
..+++|..|++.+|..+
T Consensus 113 ~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhcchhhhhcccCCcc
Confidence 13455566666665544
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=1.3e-05 Score=74.42 Aligned_cols=99 Identities=28% Similarity=0.264 Sum_probs=54.9
Q ss_pred CccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC--CCCC
Q 037539 132 MVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH--LGGF 209 (622)
Q Consensus 132 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~--l~~l 209 (622)
+.+.++|+.-+|.++++ ....+++.|++|.|+-|+|+...| +..|.+ |++|+|..|.|.....- +.++
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p-------l~rCtr-LkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP-------LQRCTR-LKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh-------HHHHHH-HHHHHHHhcccccHHHHHHHhcC
Confidence 34555556666655532 233456666666666666665444 445555 66666666665532222 5666
Q ss_pred CCCCEEEeecccCCccCcc-----ccCCCCCCCEEE
Q 037539 210 SSLEAWSLDVNCLNGTIDK-----SLSQLSKLESLS 240 (622)
Q Consensus 210 ~~L~~L~L~~n~l~~~~~~-----~l~~l~~L~~L~ 240 (622)
|+|+.|.|..|.-.+..+. .+.-+|+|+.||
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6777777766654433222 344567777665
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.97 E-value=0.00044 Score=64.27 Aligned_cols=82 Identities=23% Similarity=0.251 Sum_probs=40.7
Q ss_pred cCEEEccCC--cccccCCC-CCCCCCCCEEEeecccCCcc-CccccCCCCCCCEEEccCCCCcccccccccCCCCcccCC
Q 037539 189 LEGLYLRWN--DFTGPIPH-LGGFSSLEAWSLDVNCLNGT-IDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSI 264 (622)
Q Consensus 189 L~~L~L~~n--~~~~~~~~-l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~ 264 (622)
|+.|.++.| .+.+..+. ...+|+|+++++++|++... -...+..+++|..|++.+|..+... .-
T Consensus 67 LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~------------dy 134 (260)
T KOG2739|consen 67 LKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLD------------DY 134 (260)
T ss_pred hhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccc------------cH
Confidence 555555555 33332222 33445566666666655420 0112334556666777766654321 22
Q ss_pred chhHHhcCCCCcEEEccC
Q 037539 265 PDWFWDLSNKLSYLNLSN 282 (622)
Q Consensus 265 ~~~~~~~~~~L~~L~l~~ 282 (622)
-..++..+++|++|+-.+
T Consensus 135 re~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 135 REKVFLLLPSLKYLDGCD 152 (260)
T ss_pred HHHHHHHhhhhccccccc
Confidence 344556666777766544
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.42 E-value=4.9e-05 Score=79.55 Aligned_cols=186 Identities=23% Similarity=0.174 Sum_probs=109.9
Q ss_pred CcEEeCCCCCCCCC------------CCccEEEcCCcccCCC--CcchHhhcCC-CCCCEEEccCCCCCCCCCC--cchh
Q 037539 35 LQELVLGLGKFFET------------SNINTFFLNTVSVTKS--SDWFQVVAKL-HSLKSLVLFSCALPPVNPS--FIWH 97 (622)
Q Consensus 35 L~~L~L~~n~i~~~------------~~L~~L~Ls~n~l~~~--~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~--~~~l 97 (622)
+..|.|.+|.+..- +.|..|++++|.+.+. ....+.+... ..+++|++..|.+++.... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66777777776332 7777777777777755 2223344443 5667777777777654321 1234
Q ss_pred ccccCcccEEEccCCCCCCCC---CchhhhcccccCCCccccEEEeecccCCCCCc----hhhcCCcc-CcEeEeecCCC
Q 037539 98 FNLSTSIETLDLSDNNLPSSS---VYPWLLNLKAFQHMVSLKSLYLSDSELEGGIP----KFFGNMCS-LKKLRLSYNKL 169 (622)
Q Consensus 98 ~~l~~~L~~L~Ls~n~l~~~~---~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~-L~~L~L~~n~i 169 (622)
... ..++.+|++.|.+.... ++..+. ..+....++++|++++|.++.... ..+...+. +..|++..|.+
T Consensus 169 ~~~-~~l~~l~l~~n~l~~~g~~~l~~~l~--~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 169 EKN-EHLTELDLSLNGLIELGLLVLSQALE--SAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred hcc-cchhHHHHHhcccchhhhHHHhhhhh--hhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 443 77777777777764211 111110 023356778888888887763221 23445555 66788888877
Q ss_pred CCcCchhhhhccccccCCCcCEEEccCCcccccCCC-----CCCCCCCCEEEeecccCCc
Q 037539 170 SGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-----LGGFSSLEAWSLDVNCLNG 224 (622)
Q Consensus 170 ~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-----l~~l~~L~~L~L~~n~l~~ 224 (622)
.+.....+... +......+++++++.|.++..... +..++.++++.++.|.+..
T Consensus 246 ~d~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 246 GDVGVEKLLPC-LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred chHHHHHHHHH-hcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 75533332222 334422378888888887764332 5566788888888888764
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.36 E-value=3.1e-05 Score=80.99 Aligned_cols=191 Identities=21% Similarity=0.193 Sum_probs=99.2
Q ss_pred ccEEEcCCcccCCC--CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhcc---c-cCcccEEEccCCCCCCCCCchhhh
Q 037539 51 INTFFLNTVSVTKS--SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFN---L-STSIETLDLSDNNLPSSSVYPWLL 124 (622)
Q Consensus 51 L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~---l-~~~L~~L~Ls~n~l~~~~~~~~~~ 124 (622)
+..|.|.+|.+.+. ....+.+...+.|+.|++++|.+.+... ..+.+ . ...+++|++..|.++. .....+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~--~~l~~~l~~~~~~l~~L~l~~c~l~~-~g~~~l- 164 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGA--RLLCEGLRLPQCLLQTLELVSCSLTS-EGAAPL- 164 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhH--HHHHhhcccchHHHHHHHhhcccccc-cchHHH-
Confidence 67777777777666 4455567777777777777777764322 11111 1 1445667777776665 222211
Q ss_pred cccccCCCccccEEEeecccCCC----CCchhhc----CCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccC
Q 037539 125 NLKAFQHMVSLKSLYLSDSELEG----GIPKFFG----NMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRW 196 (622)
Q Consensus 125 ~~~~l~~l~~L~~L~L~~n~l~~----~~~~~l~----~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~ 196 (622)
...+.....++.++++.|.+.. .++..+. ...+++.|.+++|.++......+... +......+.++++..
T Consensus 165 -~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~-l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 165 -AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV-LASGESLLRELDLAS 242 (478)
T ss_pred -HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH-HhccchhhHHHHHHh
Confidence 2234456677777777776531 1222222 35566666676666653332222221 333333355566666
Q ss_pred CcccccC-----CCCCCC-CCCCEEEeecccCCccCc----cccCCCCCCCEEEccCCCCc
Q 037539 197 NDFTGPI-----PHLGGF-SSLEAWSLDVNCLNGTID----KSLSQLSKLESLSLDGNSLR 247 (622)
Q Consensus 197 n~~~~~~-----~~l~~l-~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~ 247 (622)
|.+.+.. +.+..+ ..+++++++.|.++.... ..+..++.++++.++.|.+.
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 6655321 113333 455666666666554322 22334455555565555544
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.31 E-value=0.0011 Score=71.15 Aligned_cols=64 Identities=22% Similarity=0.147 Sum_probs=33.1
Q ss_pred CCCCccEEeeeCCc-CCCCCCcccc-CCCCccEEEccCCc-ccccCchhHHhhcccccEeecCCCcC
Q 037539 338 FLNNIWTLNLHNNR-LTGKLPSPLR-NFSQLRVLDLEKNA-IFGEIPTWIGESLQNLIVLSLKSNKF 401 (622)
Q Consensus 338 ~l~~L~~L~Ls~n~-i~~~~~~~l~-~l~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~L~L~~n~l 401 (622)
.+++|+.|+++++. +++..-..+. .+++|++|.+.+|. +++..-..+.+.++.|+.|+++.|..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34556666666655 4332222222 25666666655555 34444444444556666666665554
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.75 E-value=0.0015 Score=70.13 Aligned_cols=134 Identities=19% Similarity=0.078 Sum_probs=85.9
Q ss_pred CCCCCCEEEccCC-ccccc-CCCccCCCCCccEEeeeCC-cCCCCC----CccccCCCCccEEEccCCc-ccccCchhHH
Q 037539 314 HFDRLFILNLANN-RLSGK-IPDSMGFLNNIWTLNLHNN-RLTGKL----PSPLRNFSQLRVLDLEKNA-IFGEIPTWIG 385 (622)
Q Consensus 314 ~~~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~Ls~n-~i~~~~----~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~ 385 (622)
.++.|+.+.+.++ .++.. .......++.|+.|+++++ ...... ......+++|+.|+++++. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4678888888877 33321 2234456788999999873 211111 1244567899999999988 5445555556
Q ss_pred hhcccccEeecCCCc-CcccCChhhhHhHhhhcCCccEEECCCCcCCc--cchHHhhcccccceeecCC
Q 037539 386 ESLQNLIVLSLKSNK-FHGNIPYQFENEYKSTLGLVRCLDLSSNKLDG--AIPEEIMDLVGLIALNLSR 451 (622)
Q Consensus 386 ~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~ 451 (622)
..+++|+.|.+.+|. +++..-..+. ..++.|++|+++++.... .+.....++++|+.|.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~----~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIA----ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHH----HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 568999999988887 5544333333 368889999999887642 1233344566666655433
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=0.0042 Score=55.57 Aligned_cols=60 Identities=25% Similarity=0.181 Sum_probs=29.3
Q ss_pred CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCC
Q 037539 49 SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDN 112 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n 112 (622)
..++.+|-+++.|... -+ .+..++.++.|.+.+|.-.+.... ..+....++|+.|++++|
T Consensus 101 ~~IeaVDAsds~I~~eGle---~L~~l~~i~~l~l~~ck~~dD~~L-~~l~~~~~~L~~L~lsgC 161 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLE---HLRDLRSIKSLSLANCKYFDDWCL-ERLGGLAPSLQDLDLSGC 161 (221)
T ss_pred ceEEEEecCCchHHHHHHH---HHhccchhhhheeccccchhhHHH-HHhcccccchheeeccCC
Confidence 3455555555555555 33 455556666666665543322110 223333355555555555
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.32 E-value=0.015 Score=32.09 Aligned_cols=11 Identities=45% Similarity=0.788 Sum_probs=4.4
Q ss_pred CEEeCCCCccC
Q 037539 469 DFLDLSRNLFS 479 (622)
Q Consensus 469 ~~L~Ls~n~l~ 479 (622)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444433
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.90 E-value=0.025 Score=31.17 Aligned_cols=12 Identities=58% Similarity=0.612 Sum_probs=5.8
Q ss_pred cceeecCCcccc
Q 037539 444 LIALNLSRNHLT 455 (622)
Q Consensus 444 L~~L~L~~n~l~ 455 (622)
|++|+|++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444455555444
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.26 E-value=0.014 Score=52.25 Aligned_cols=83 Identities=23% Similarity=0.184 Sum_probs=57.6
Q ss_pred ccEEECCCCcCCccchHHhhcccccceeecCCccc-cCCCccccCC-CCCCCEEeCCCCc-cCccCCccccCCCCCCEEE
Q 037539 420 VRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHL-TGPITPKIGE-LTSLDFLDLSRNL-FSGSIPCSLSQLSGLGVLD 496 (622)
Q Consensus 420 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~-l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~ 496 (622)
++.+|-+++.|..+..+.+.+++.++.|.+.+|.- .+.-.+.+++ .++|+.|+|++|+ ||+..-.++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 56778888888777777778888888888888753 2222233333 5788888888774 6766666677788888887
Q ss_pred CcCCcC
Q 037539 497 LSYNNL 502 (622)
Q Consensus 497 ls~N~l 502 (622)
+.+=+.
T Consensus 183 l~~l~~ 188 (221)
T KOG3864|consen 183 LYDLPY 188 (221)
T ss_pred hcCchh
Confidence 765443
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.65 E-value=0.17 Score=25.86 Aligned_cols=11 Identities=55% Similarity=0.860 Sum_probs=3.5
Q ss_pred ccEEEccCCcc
Q 037539 366 LRVLDLEKNAI 376 (622)
Q Consensus 366 L~~L~L~~n~i 376 (622)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.77 E-value=0.31 Score=28.01 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=13.9
Q ss_pred CCccEEEccCCcccccCchhHH
Q 037539 364 SQLRVLDLEKNAIFGEIPTWIG 385 (622)
Q Consensus 364 ~~L~~L~L~~n~i~~~~~~~~~ 385 (622)
++|++|+|++|++ ..+|...|
T Consensus 2 ~~L~~L~L~~N~l-~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQL-SSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcC-CcCCHHHc
Confidence 5667777777776 66666554
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.77 E-value=0.31 Score=28.01 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=13.9
Q ss_pred CCccEEEccCCcccccCchhHH
Q 037539 364 SQLRVLDLEKNAIFGEIPTWIG 385 (622)
Q Consensus 364 ~~L~~L~L~~n~i~~~~~~~~~ 385 (622)
++|++|+|++|++ ..+|...|
T Consensus 2 ~~L~~L~L~~N~l-~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQL-SSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcC-CcCCHHHc
Confidence 5667777777776 66666554
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.43 E-value=0.39 Score=27.57 Aligned_cols=14 Identities=50% Similarity=0.534 Sum_probs=7.5
Q ss_pred CCCCEEeCCCCccC
Q 037539 466 TSLDFLDLSRNLFS 479 (622)
Q Consensus 466 ~~L~~L~Ls~n~l~ 479 (622)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.43 E-value=0.39 Score=27.57 Aligned_cols=14 Identities=50% Similarity=0.534 Sum_probs=7.5
Q ss_pred CCCCEEeCCCCccC
Q 037539 466 TSLDFLDLSRNLFS 479 (622)
Q Consensus 466 ~~L~~L~Ls~n~l~ 479 (622)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 82
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=87.54 E-value=0.43 Score=59.12 Aligned_cols=74 Identities=19% Similarity=0.140 Sum_probs=46.2
Q ss_pred eCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 037539 472 DLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCLDEESTPGPGTDDDS 550 (622)
Q Consensus 472 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~C~~~~~~~~~~~~~~~ 550 (622)
||++|+|+...+..|..+++|+.|+|++|++.|.|.... |.......... -..+....|..|...++.......
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~W----L~~WL~~~~v~-v~~~~~i~CasP~~LrG~~L~~l~ 74 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLAR----LPRWAEEKGVK-VRQPEAALCAGPGALAGQPLLGIP 74 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHH----HHHHHHhcCcc-ccCCcccCCCCChHHCCCCcccCC
Confidence 578888887777788889999999999999998866432 21111111100 111223457777776666655443
No 83
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=87.10 E-value=1.8 Score=44.27 Aligned_cols=63 Identities=24% Similarity=0.088 Sum_probs=30.0
Q ss_pred cccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCC---CCchhhcCCccCcEeEeecCCC
Q 037539 103 SIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG---GIPKFFGNMCSLKKLRLSYNKL 169 (622)
Q Consensus 103 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~L~~n~i 169 (622)
.+.+++++.|...+ ++|..+. ....-.-+++++.+...+.- ..+-..+.-+++...+++.|..
T Consensus 215 ~lteldls~n~~Kd-dip~~~n---~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKD-DIPRTLN---KKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCc-cchhHHH---HhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 45666666666655 5554331 11233345555555554431 1112233345566666665543
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.24 E-value=0.33 Score=27.30 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=4.9
Q ss_pred CccEEECCCCcCC
Q 037539 419 LVRCLDLSSNKLD 431 (622)
Q Consensus 419 ~L~~L~L~~n~l~ 431 (622)
+|++|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=86.13 E-value=3.8 Score=42.09 Aligned_cols=207 Identities=13% Similarity=-0.050 Sum_probs=99.1
Q ss_pred cCcCCcEEeCCCCCCCCC------CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCc
Q 037539 31 NIERLQELVLGLGKFFET------SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTS 103 (622)
Q Consensus 31 ~l~~L~~L~L~~n~i~~~------~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~ 103 (622)
.-+.++++|++.|.+... ...--+.++.|..++. ..-...=..-..+.+++|+.|...+.++....+..-..-
T Consensus 163 pnpr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred CcchhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 346678888888887443 1111155556655544 110000011135777888887777666622222222245
Q ss_pred ccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCC--------CCchhhcCCccCcEeEeecCCCCCcCch
Q 037539 104 IETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG--------GIPKFFGNMCSLKKLRLSYNKLSGQYSQ 175 (622)
Q Consensus 104 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~--------~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 175 (622)
+++++.+...++-... ..--.++.-+++.+.+++.|..+. ..-+.|..=.++ +|++..+.....-+.
T Consensus 243 l~~ld~s~tgirlD~l----~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lk 317 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLL----TSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLK 317 (553)
T ss_pred hhcccccccccchhhc----ccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhh
Confidence 6777777665543111 111123445667777776665431 112234444556 666666655433332
Q ss_pred hhhhcccccc-CCCcCEEEccCCcccccCC--C-CCCCCCCCEEEeecccCCccCcc--ccCCCCCCCEEEccCC
Q 037539 176 VIQNLSFGCV-VNSLEGLYLRWNDFTGPIP--H-LGGFSSLEAWSLDVNCLNGTIDK--SLSQLSKLESLSLDGN 244 (622)
Q Consensus 176 ~~~~l~l~~~-~~~L~~L~L~~n~~~~~~~--~-l~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n 244 (622)
.+--. .... ...=-+++++.|...+.-. . +.+ ..+++|++.+|.+.+.... .+..-+..+.+++..-
T Consensus 318 s~LLg-la~ne~t~g~rldl~~cp~~~a~vleaci~g-~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs 390 (553)
T KOG4242|consen 318 SMLLG-LAENEATLGARLDLRRCPLERAEVLEACIFG-QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRS 390 (553)
T ss_pred hhhcc-cccccccccccCChhhccccccchhhccccc-eeeeEeeccccccccccccccceeecccccccccccc
Confidence 22100 0000 0101344555554433111 1 222 2378888888877655432 2334456666766654
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.54 E-value=0.039 Score=50.54 Aligned_cols=85 Identities=19% Similarity=0.197 Sum_probs=64.3
Q ss_pred hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCC
Q 037539 387 SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELT 466 (622)
Q Consensus 387 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 466 (622)
.....+.||++.|++.... ..+. .+..+..||++.|++. ..|+.+.+...+..+++..|..+ ..|.+++..+
T Consensus 40 ~~kr~tvld~~s~r~vn~~-~n~s-----~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLG-KNFS-----ILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred ccceeeeehhhhhHHHhhc-cchH-----HHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence 4677888888888765322 2222 4666778888888887 77888888888888888888777 6778888888
Q ss_pred CCCEEeCCCCccC
Q 037539 467 SLDFLDLSRNLFS 479 (622)
Q Consensus 467 ~L~~L~Ls~n~l~ 479 (622)
.++++++-+|.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 8888888888765
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.99 E-value=0.12 Score=47.39 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=45.2
Q ss_pred ccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhh
Q 037539 360 LRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIM 439 (622)
Q Consensus 360 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 439 (622)
+......+.||++.|++ ...-..+. .++.|..|+++.|.+. ..|..+. ....++.+++..|..+ ..|.++.
T Consensus 38 i~~~kr~tvld~~s~r~-vn~~~n~s-~~t~~~rl~~sknq~~-~~~~d~~-----q~~e~~~~~~~~n~~~-~~p~s~~ 108 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRL-VNLGKNFS-ILTRLVRLDLSKNQIK-FLPKDAK-----QQRETVNAASHKNNHS-QQPKSQK 108 (326)
T ss_pred hhccceeeeehhhhhHH-HhhccchH-HHHHHHHHhccHhhHh-hChhhHH-----HHHHHHHHHhhccchh-hCCcccc
Confidence 33445556666666654 22222222 3455666666666554 2233222 3444555555555555 5566666
Q ss_pred cccccceeecCCcccc
Q 037539 440 DLVGLIALNLSRNHLT 455 (622)
Q Consensus 440 ~l~~L~~L~L~~n~l~ 455 (622)
..+.++.+++.+|.++
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 6666666666666554
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.48 E-value=3.1 Score=24.00 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=9.3
Q ss_pred cCCcEEeCCCCCCCCC
Q 037539 33 ERLQELVLGLGKFFET 48 (622)
Q Consensus 33 ~~L~~L~L~~n~i~~~ 48 (622)
++|+.|+++.|.|+..
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666665443
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.95 E-value=4.5 Score=23.28 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=11.8
Q ss_pred CCCCEEECcCCcCcccCCC
Q 037539 490 SGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 490 ~~L~~L~ls~N~l~~~~p~ 508 (622)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35777777777776 4453
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.88 E-value=2.9 Score=43.75 Aligned_cols=70 Identities=23% Similarity=0.175 Sum_probs=34.6
Q ss_pred cCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCC
Q 037539 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG 147 (622)
Q Consensus 72 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 147 (622)
.+.+.+..++|++|++-..... .++..-.++|+.|+|++|...- ....++.. + ....|++|-+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~-sslsq~apklk~L~LS~N~~~~-~~~~el~K---~-k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDAL-SSLSQIAPKLKTLDLSHNHSKI-SSESELDK---L-KGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhh-hHHHHhcchhheeecccchhhh-cchhhhhh---h-cCCCHHHeeecCCcccc
Confidence 3456666666666665543321 2333333667777777772211 11111111 1 22456677777776653
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.59 E-value=4 Score=23.90 Aligned_cols=12 Identities=50% Similarity=0.747 Sum_probs=6.4
Q ss_pred CccEEEccCCcc
Q 037539 365 QLRVLDLEKNAI 376 (622)
Q Consensus 365 ~L~~L~L~~n~i 376 (622)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555555
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.85 E-value=4.7 Score=42.29 Aligned_cols=15 Identities=47% Similarity=0.758 Sum_probs=7.9
Q ss_pred CCCCCEEEccCCccc
Q 037539 315 FDRLFILNLANNRLS 329 (622)
Q Consensus 315 ~~~L~~L~L~~n~i~ 329 (622)
.+.+..+.|++|++.
T Consensus 217 ~p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY 231 (585)
T ss_pred Ccceeeeecccchhh
Confidence 444555555555543
No 93
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=45.78 E-value=15 Score=31.54 Aligned_cols=10 Identities=10% Similarity=-0.120 Sum_probs=4.0
Q ss_pred eeehhhHHHH
Q 037539 565 FYVSSILSFF 574 (622)
Q Consensus 565 ~~~~~~~~~~ 574 (622)
+.+++++.++
T Consensus 54 vVVGVGg~il 63 (154)
T PF04478_consen 54 VVVGVGGPIL 63 (154)
T ss_pred EEecccHHHH
Confidence 3344443333
No 94
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=38.43 E-value=9.7 Score=30.28 Aligned_cols=14 Identities=7% Similarity=0.014 Sum_probs=7.0
Q ss_pred eeeehhhHHHHHHH
Q 037539 564 GFYVSSILSFFVGF 577 (622)
Q Consensus 564 ~~~~~~~~~~~~~~ 577 (622)
..+.++++++++++
T Consensus 66 gaiagi~vg~~~~v 79 (96)
T PTZ00382 66 GAIAGISVAVVAVV 79 (96)
T ss_pred ccEEEEEeehhhHH
Confidence 34555555544444
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=37.70 E-value=22 Score=20.17 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=5.5
Q ss_pred CcccEEEccCC
Q 037539 102 TSIETLDLSDN 112 (622)
Q Consensus 102 ~~L~~L~Ls~n 112 (622)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 96
>PF15102 TMEM154: TMEM154 protein family
Probab=35.81 E-value=40 Score=28.91 Aligned_cols=22 Identities=5% Similarity=-0.000 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhheeeeeccccc
Q 037539 571 LSFFVGFWGVSGTLMLNRSWSY 592 (622)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~ 592 (622)
+.+++.++++++++.+.+|||.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHheeEEeeccc
Confidence 3333334444444555566654
No 97
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.69 E-value=10 Score=31.59 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=12.7
Q ss_pred eeehhhHHHHHHHHHhhheeee
Q 037539 565 FYVSSILSFFVGFWGVSGTLML 586 (622)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~ 586 (622)
.+.++++|+++|++.++++++|
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHH
Confidence 4566666666666555554444
No 98
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=33.62 E-value=27 Score=34.69 Aligned_cols=8 Identities=13% Similarity=-0.047 Sum_probs=3.0
Q ss_pred ehhhHHHH
Q 037539 567 VSSILSFF 574 (622)
Q Consensus 567 ~~~~~~~~ 574 (622)
+.++||++
T Consensus 273 vPIaVG~~ 280 (306)
T PF01299_consen 273 VPIAVGAA 280 (306)
T ss_pred HHHHHHHH
Confidence 33334433
No 99
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=32.00 E-value=16 Score=33.34 Aligned_cols=27 Identities=0% Similarity=0.001 Sum_probs=14.3
Q ss_pred eeeehhhHHHHHHHHHhhheeeeeccc
Q 037539 564 GFYVSSILSFFVGFWGVSGTLMLNRSW 590 (622)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (622)
.++++++.|+++++++++++.+.++++
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 455566566655555555444444344
No 100
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=30.32 E-value=22 Score=30.30 Aligned_cols=13 Identities=8% Similarity=-0.137 Sum_probs=6.6
Q ss_pred HHhhheeeeeccc
Q 037539 578 WGVSGTLMLNRSW 590 (622)
Q Consensus 578 ~~~~~~~~~~~~~ 590 (622)
++.++++|+|+++
T Consensus 24 ~cgiGcvwhwkhr 36 (158)
T PF11770_consen 24 LCGIGCVWHWKHR 36 (158)
T ss_pred HHhcceEEEeecc
Confidence 4455555554443
No 101
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=28.45 E-value=56 Score=28.24 Aligned_cols=36 Identities=6% Similarity=-0.093 Sum_probs=23.4
Q ss_pred eeeehhhHHHHHHHHHhhheeeeeccccceeeheec
Q 037539 564 GFYVSSILSFFVGFWGVSGTLMLNRSWSYGYFNFLT 599 (622)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (622)
..++++++|+.+.+++++++++|+.+.|.+--.|+.
T Consensus 49 nIVIGvVVGVGg~ill~il~lvf~~c~r~kktdfid 84 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALVFIFCIRRKKTDFID 84 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhheeEEEecccCcccc
Confidence 478999999888887666665555544444344444
No 102
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=20.97 E-value=59 Score=26.99 Aligned_cols=23 Identities=22% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHhhheeeeecccccee
Q 037539 572 SFFVGFWGVSGTLMLNRSWSYGY 594 (622)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~ 594 (622)
++++++.++.+++++++++|++.
T Consensus 87 ~v~lVl~llsg~lv~rrcrrr~~ 109 (129)
T PF12191_consen 87 SVVLVLALLSGFLVWRRCRRREK 109 (129)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHhhhhcccc
Confidence 33333333344455555554443
No 103
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=20.87 E-value=33 Score=29.92 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred eeeehhhHHHHHHHHHhhhe-eeeecccccee
Q 037539 564 GFYVSSILSFFVGFWGVSGT-LMLNRSWSYGY 594 (622)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 594 (622)
..++++++|+++++.++.++ +++.|+|+-||
T Consensus 129 ~tLVGIIVGVLlaIG~igGIIivvvRKmSGRy 160 (162)
T PF05808_consen 129 VTLVGIIVGVLLAIGFIGGIIIVVVRKMSGRY 160 (162)
T ss_dssp --------------------------------
T ss_pred eeeeeehhhHHHHHHHHhheeeEEeehhcccc
Confidence 56677777777766444443 33334443333
No 104
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.11 E-value=61 Score=41.58 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=27.1
Q ss_pred ECCCCcCCccchHHhhcccccceeecCCcccc
Q 037539 424 DLSSNKLDGAIPEEIMDLVGLIALNLSRNHLT 455 (622)
Q Consensus 424 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 455 (622)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 58899998777788888999999999988765
Done!