Query 037539
Match_columns 622
No_of_seqs 533 out of 4406
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 23:01:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.1E-61 3.9E-66 546.1 32.3 515 3-539 125-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-56 4.3E-61 505.1 34.7 492 2-525 98-716 (768)
3 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-52 6.3E-57 475.9 34.1 498 4-550 24-603 (844)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-51 3.8E-56 460.6 38.9 502 5-531 26-627 (680)
5 3t6q_A CD180 antigen; protein- 100.0 9.7E-52 3.3E-56 455.0 33.0 495 6-547 35-599 (606)
6 3t6q_A CD180 antigen; protein- 100.0 9.8E-51 3.3E-55 447.0 33.8 461 2-509 55-566 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-51 8.4E-56 451.8 25.4 456 33-530 32-562 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 2.8E-47 9.6E-52 425.1 41.2 466 33-523 25-594 (680)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-47 4.3E-52 422.2 31.4 489 4-549 32-599 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 6E-48 2.1E-52 438.8 26.8 465 2-509 46-566 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 2.4E-47 8.1E-52 417.1 28.4 431 33-509 28-537 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 4.5E-45 1.6E-49 399.0 29.5 464 35-531 9-536 (570)
13 4eco_A Uncharacterized protein 100.0 1E-46 3.5E-51 414.8 12.2 364 84-505 192-602 (636)
14 4eco_A Uncharacterized protein 100.0 2.4E-45 8.1E-50 403.9 22.7 441 49-527 81-601 (636)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-44 4E-49 393.7 25.2 449 33-530 26-514 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-44 7.4E-49 388.8 24.0 445 7-508 3-486 (520)
17 4ecn_A Leucine-rich repeat pro 100.0 3.9E-44 1.3E-48 400.4 21.1 363 85-503 435-840 (876)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-43 4.9E-48 382.4 22.6 447 36-530 3-485 (520)
19 4ecn_A Leucine-rich repeat pro 100.0 4.4E-43 1.5E-47 392.0 27.0 414 49-527 323-841 (876)
20 2z81_A CD282 antigen, TOLL-lik 100.0 5.6E-43 1.9E-47 380.5 25.6 450 32-525 4-485 (549)
21 4g8a_A TOLL-like receptor 4; l 100.0 5.5E-42 1.9E-46 379.6 34.0 490 34-549 53-621 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.6E-42 3.3E-46 371.2 21.3 459 30-537 28-546 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 3.8E-40 1.3E-44 364.9 30.8 453 5-508 53-585 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.2E-41 2.5E-45 364.3 22.5 428 49-531 31-515 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 2.5E-39 8.5E-44 343.3 27.9 383 77-510 12-415 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 2.8E-38 9.6E-43 335.2 28.4 380 36-483 13-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 5.8E-38 2E-42 330.2 25.5 374 49-508 11-416 (454)
28 2id5_A Lingo-1, leucine rich r 100.0 1.4E-37 5E-42 331.6 23.2 324 134-527 33-357 (477)
29 1jl5_A Outer protein YOPM; leu 100.0 3.5E-37 1.2E-41 324.2 24.8 397 3-508 10-434 (454)
30 1o6v_A Internalin A; bacterial 100.0 1.8E-35 6.2E-40 313.9 34.3 303 130-504 87-389 (466)
31 1o6v_A Internalin A; bacterial 100.0 3.7E-35 1.3E-39 311.6 34.1 345 49-481 46-390 (466)
32 2id5_A Lingo-1, leucine rich r 100.0 4.6E-35 1.6E-39 312.2 28.4 347 78-508 14-361 (477)
33 3bz5_A Internalin-J, INLJ; leu 100.0 4E-35 1.4E-39 308.8 25.3 342 49-509 42-393 (457)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1E-34 3.6E-39 305.6 25.1 351 28-487 37-395 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 2.6E-34 9E-39 298.0 24.1 333 102-530 45-378 (390)
36 3oja_B Anopheles plasmodium-re 100.0 1.2E-33 4.2E-38 308.9 24.2 333 102-530 51-384 (597)
37 4fmz_A Internalin; leucine ric 100.0 2.7E-32 9.2E-37 278.3 30.5 283 130-478 63-345 (347)
38 3o6n_A APL1; leucine-rich repe 100.0 8.5E-33 2.9E-37 286.7 26.5 306 74-431 44-352 (390)
39 4fmz_A Internalin; leucine ric 100.0 6.1E-32 2.1E-36 275.7 30.5 306 72-455 41-346 (347)
40 1ogq_A PGIP-2, polygalacturona 100.0 5.3E-33 1.8E-37 278.5 17.9 219 308-535 93-312 (313)
41 3oja_B Anopheles plasmodium-re 100.0 5.4E-32 1.8E-36 296.0 26.5 307 74-432 50-359 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 1.9E-34 6.4E-39 306.4 3.8 362 130-504 25-441 (461)
43 1z7x_W Ribonuclease inhibitor; 100.0 2.2E-34 7.7E-39 305.7 1.5 360 133-505 3-413 (461)
44 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-30 7.6E-35 262.2 24.7 288 157-501 33-331 (332)
45 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-31 4.4E-36 268.4 14.6 191 308-507 117-308 (313)
46 2ft3_A Biglycan; proteoglycan, 100.0 4.1E-30 1.4E-34 260.2 24.3 295 102-452 33-330 (332)
47 1xku_A Decorin; proteoglycan, 100.0 1.5E-29 5E-34 256.0 27.4 290 156-501 30-330 (330)
48 1xku_A Decorin; proteoglycan, 100.0 2E-29 6.8E-34 255.1 28.3 284 34-400 32-330 (330)
49 3ogk_B Coronatine-insensitive 100.0 3.3E-31 1.1E-35 290.5 1.2 387 73-505 110-528 (592)
50 2z80_A TOLL-like receptor 2, v 100.0 4.5E-28 1.5E-32 247.5 21.9 261 189-507 54-318 (353)
51 3zyj_A Leucine-rich repeat-con 100.0 1E-27 3.5E-32 252.4 24.2 191 311-508 107-297 (440)
52 3zyi_A Leucine-rich repeat-con 100.0 7.3E-28 2.5E-32 254.4 22.8 192 310-508 117-308 (452)
53 3ogk_B Coronatine-insensitive 100.0 4.3E-30 1.5E-34 281.7 2.5 397 49-500 112-548 (592)
54 2z66_A Variable lymphocyte rec 100.0 3.1E-28 1.1E-32 243.5 15.7 255 189-508 9-266 (306)
55 2z66_A Variable lymphocyte rec 100.0 9.5E-28 3.3E-32 240.0 17.7 276 159-508 9-292 (306)
56 2z80_A TOLL-like receptor 2, v 100.0 1E-27 3.4E-32 244.9 17.4 214 311-530 95-318 (353)
57 1ozn_A Reticulon 4 receptor; N 100.0 1.1E-27 3.7E-32 236.9 16.5 211 293-509 33-244 (285)
58 3zyj_A Leucine-rich repeat-con 99.9 1.7E-26 5.9E-31 242.9 22.6 250 293-550 65-333 (440)
59 3zyi_A Leucine-rich repeat-con 99.9 2E-26 6.9E-31 243.3 23.0 249 293-549 76-343 (452)
60 4fcg_A Uncharacterized protein 99.9 1E-26 3.4E-31 234.3 19.2 186 309-503 120-314 (328)
61 2p1m_B Transport inhibitor res 99.9 3.8E-29 1.3E-33 274.3 -1.6 382 72-503 102-519 (594)
62 1ozn_A Reticulon 4 receptor; N 99.9 2.7E-26 9.2E-31 226.9 18.9 204 133-376 32-237 (285)
63 4fcg_A Uncharacterized protein 99.9 3.4E-26 1.2E-30 230.3 19.8 233 188-479 82-314 (328)
64 3o53_A Protein LRIM1, AGAP0063 99.9 5.8E-28 2E-32 242.5 5.3 180 316-507 99-280 (317)
65 1wwl_A Monocyte differentiatio 99.9 5E-27 1.7E-31 235.1 11.3 262 71-376 39-308 (312)
66 2p1m_B Transport inhibitor res 99.9 3.4E-29 1.2E-33 274.7 -6.7 420 30-504 63-545 (594)
67 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-24 4.4E-29 235.4 28.3 263 157-508 40-302 (622)
68 3g06_A SSPH2 (leucine-rich rep 99.9 6E-25 2E-29 238.0 25.2 268 134-490 41-308 (622)
69 1wwl_A Monocyte differentiatio 99.9 5.9E-27 2E-31 234.6 6.4 254 153-503 39-309 (312)
70 3oja_A Leucine-rich immune mol 99.9 3E-26 1E-30 243.3 12.1 171 316-498 99-270 (487)
71 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-26 5.2E-31 232.2 8.1 260 134-452 11-272 (317)
72 2z62_A TOLL-like receptor 4, v 99.9 1.8E-24 6.1E-29 212.7 20.4 210 293-509 29-243 (276)
73 2o6q_A Variable lymphocyte rec 99.9 5.9E-24 2E-28 208.2 21.7 187 316-508 37-223 (270)
74 2o6q_A Variable lymphocyte rec 99.9 7.3E-23 2.5E-27 200.3 21.2 205 317-530 17-222 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 3.2E-23 1.1E-27 203.8 17.8 208 316-530 28-241 (276)
76 1p9a_G Platelet glycoprotein I 99.9 4.6E-23 1.6E-27 203.5 17.9 181 316-506 31-211 (290)
77 3oja_A Leucine-rich immune mol 99.9 1.4E-23 4.9E-28 222.7 14.6 224 263-505 21-252 (487)
78 1p9a_G Platelet glycoprotein I 99.9 5.8E-23 2E-27 202.8 17.8 206 312-530 6-212 (290)
79 3rfs_A Internalin B, repeat mo 99.9 6.8E-23 2.3E-27 200.7 13.3 41 131-171 107-147 (272)
80 3rfs_A Internalin B, repeat mo 99.9 7.1E-23 2.4E-27 200.6 13.4 210 71-317 37-247 (272)
81 3m19_A Variable lymphocyte rec 99.9 1.7E-22 5.7E-27 195.5 15.6 214 317-540 15-234 (251)
82 3goz_A Leucine-rich repeat-con 99.9 2.4E-23 8.3E-28 212.9 9.9 189 316-505 80-299 (362)
83 2ca6_A RAN GTPase-activating p 99.9 1.4E-24 4.9E-29 224.3 0.7 195 313-507 91-320 (386)
84 3goz_A Leucine-rich repeat-con 99.9 3.7E-23 1.3E-27 211.5 8.9 168 316-483 109-301 (362)
85 4glp_A Monocyte differentiatio 99.9 1.7E-21 5.9E-26 194.7 19.2 233 102-376 64-306 (310)
86 4glp_A Monocyte differentiatio 99.9 2E-22 6.9E-27 201.4 11.7 206 273-504 91-308 (310)
87 2ca6_A RAN GTPase-activating p 99.9 2.4E-23 8.4E-28 215.1 4.3 97 149-247 24-135 (386)
88 2ast_B S-phase kinase-associat 99.9 1.3E-22 4.3E-27 205.7 7.6 182 318-509 120-312 (336)
89 2ast_B S-phase kinase-associat 99.9 1.8E-22 6.1E-27 204.6 8.6 202 273-500 70-282 (336)
90 2xwt_C Thyrotropin receptor; s 99.9 9.8E-22 3.4E-26 188.7 13.2 186 303-500 42-236 (239)
91 2xwt_C Thyrotropin receptor; s 99.9 2E-21 6.8E-26 186.5 12.5 197 316-523 31-236 (239)
92 3m19_A Variable lymphocyte rec 99.9 1.6E-20 5.3E-25 181.6 18.7 160 316-481 35-194 (251)
93 1h6u_A Internalin H; cell adhe 99.9 1.3E-20 4.4E-25 187.9 18.6 189 294-504 43-231 (308)
94 1h6u_A Internalin H; cell adhe 99.8 4E-20 1.4E-24 184.3 17.1 191 49-287 41-231 (308)
95 4ay9_X Follicle-stimulating ho 99.8 3.4E-19 1.2E-23 181.1 18.8 57 189-247 11-67 (350)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 5.6E-20 1.9E-24 173.6 11.1 158 344-509 15-172 (220)
97 2o6s_A Variable lymphocyte rec 99.8 4.5E-19 1.5E-23 166.1 15.9 163 316-491 28-190 (208)
98 4ay9_X Follicle-stimulating ho 99.8 1.6E-18 5.4E-23 176.2 20.5 240 105-399 12-256 (350)
99 2o6s_A Variable lymphocyte rec 99.8 2.4E-19 8.3E-24 168.0 13.0 175 319-509 10-184 (208)
100 2v9t_B SLIT homolog 2 protein 99.8 1.9E-19 6.5E-24 169.9 10.1 172 365-550 33-204 (220)
101 3cvr_A Invasion plasmid antige 99.8 1.3E-18 4.5E-23 186.0 16.4 181 274-507 60-247 (571)
102 2xot_A Amphoterin-induced prot 99.8 5.2E-19 1.8E-23 180.5 12.0 180 319-507 21-206 (361)
103 1h6t_A Internalin B; cell adhe 99.8 2E-18 6.7E-23 170.5 14.4 173 312-504 42-214 (291)
104 2v9t_B SLIT homolog 2 protein 99.8 7.6E-19 2.6E-23 165.8 10.8 156 367-531 14-170 (220)
105 3cvr_A Invasion plasmid antige 99.8 3.2E-18 1.1E-22 183.0 15.4 189 234-490 59-254 (571)
106 1h6t_A Internalin B; cell adhe 99.8 3.9E-18 1.3E-22 168.3 13.3 185 33-248 24-214 (291)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 1.8E-18 6.2E-23 163.2 10.3 155 367-530 14-170 (220)
108 3e6j_A Variable lymphocyte rec 99.8 8.8E-18 3E-22 159.6 14.9 156 318-507 21-176 (229)
109 3e6j_A Variable lymphocyte rec 99.7 2.7E-17 9.2E-22 156.2 16.0 156 293-482 20-175 (229)
110 1m9s_A Internalin B; cell inva 99.7 7.1E-18 2.4E-22 182.4 12.9 187 275-481 23-212 (605)
111 4ezg_A Putative uncharacterize 99.7 1.5E-17 5.2E-22 154.1 13.3 152 339-504 43-195 (197)
112 1w8a_A SLIT protein; signaling 99.7 5.7E-18 2E-22 156.1 9.4 134 367-509 11-145 (192)
113 2xot_A Amphoterin-induced prot 99.7 3.7E-17 1.2E-21 166.8 15.5 151 302-455 49-202 (361)
114 4ezg_A Putative uncharacterize 99.7 3.6E-17 1.2E-21 151.5 12.2 154 72-247 41-194 (197)
115 1m9s_A Internalin B; cell inva 99.7 9.3E-17 3.2E-21 173.7 16.5 170 314-503 41-210 (605)
116 1xeu_A Internalin C; cellular 99.7 2.5E-17 8.6E-22 159.9 9.0 167 318-505 21-187 (263)
117 1xeu_A Internalin C; cellular 99.7 4.2E-17 1.4E-21 158.3 9.6 168 293-481 20-187 (263)
118 1w8a_A SLIT protein; signaling 99.7 8.8E-17 3E-21 148.1 9.9 176 343-530 11-187 (192)
119 3sb4_A Hypothetical leucine ri 99.7 9.2E-17 3.1E-21 161.7 10.2 184 310-503 118-310 (329)
120 4b8c_D Glucose-repressible alc 99.7 5.1E-17 1.7E-21 180.2 8.3 193 296-505 205-406 (727)
121 1dce_A Protein (RAB geranylger 99.7 1.6E-18 5.3E-23 186.5 -3.8 108 312-425 459-567 (567)
122 3sb4_A Hypothetical leucine ri 99.7 9.2E-17 3.1E-21 161.7 9.1 102 315-424 225-327 (329)
123 2wfh_A SLIT homolog 2 protein 99.7 2.1E-16 7.1E-21 145.6 10.7 165 367-549 13-177 (193)
124 1dce_A Protein (RAB geranylger 99.6 2.8E-18 9.4E-23 184.5 -6.0 185 313-509 346-552 (567)
125 4b8c_D Glucose-repressible alc 99.6 1.4E-16 4.6E-21 176.8 7.0 189 217-455 208-404 (727)
126 2ell_A Acidic leucine-rich nuc 99.6 1.4E-15 4.8E-20 136.9 11.2 132 364-503 24-160 (168)
127 2o6r_A Variable lymphocyte rec 99.6 3.3E-15 1.1E-19 135.7 11.6 134 366-508 9-142 (177)
128 2ell_A Acidic leucine-rich nuc 99.6 5.5E-15 1.9E-19 133.0 12.7 86 315-403 23-109 (168)
129 2je0_A Acidic leucine-rich nuc 99.6 2.4E-15 8.1E-20 132.5 9.1 83 416-498 62-148 (149)
130 2je0_A Acidic leucine-rich nuc 99.6 1.1E-14 3.6E-19 128.3 11.4 126 316-449 17-147 (149)
131 4fdw_A Leucine rich hypothetic 99.6 7.5E-14 2.6E-18 143.4 19.1 240 189-502 137-382 (401)
132 4fdw_A Leucine rich hypothetic 99.6 7E-14 2.4E-18 143.7 17.7 184 307-504 171-359 (401)
133 2wfh_A SLIT homolog 2 protein 99.5 4.2E-14 1.4E-18 130.1 12.7 127 344-480 14-140 (193)
134 4fs7_A Uncharacterized protein 99.5 2.5E-13 8.6E-18 140.1 19.7 56 417-474 319-374 (394)
135 4fs7_A Uncharacterized protein 99.5 1.2E-13 4.2E-18 142.5 17.3 235 182-471 158-393 (394)
136 1a9n_A U2A', U2A'; complex (nu 99.5 3.8E-14 1.3E-18 128.5 9.7 134 360-504 15-154 (176)
137 2o6r_A Variable lymphocyte rec 99.5 1.8E-13 6E-18 124.2 13.6 111 317-433 29-139 (177)
138 1ds9_A Outer arm dynein; leuci 99.5 1.1E-15 3.9E-20 141.5 -2.1 132 359-503 43-185 (198)
139 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-13 4.9E-18 124.6 10.6 134 311-454 14-152 (176)
140 1ds9_A Outer arm dynein; leuci 99.5 1.2E-15 4.1E-20 141.4 -4.2 156 312-480 14-186 (198)
141 3un9_A NLR family member X1; l 99.5 9.8E-15 3.3E-19 148.6 1.9 165 340-504 72-253 (372)
142 3g39_A Variable lymphocyte rec 99.4 3.2E-13 1.1E-17 121.4 10.7 111 390-508 10-120 (170)
143 2r9u_A Variable lymphocyte rec 99.4 8.2E-13 2.8E-17 119.1 10.5 108 392-507 15-122 (174)
144 3un9_A NLR family member X1; l 99.4 2.2E-14 7.4E-19 146.0 -2.2 187 316-503 72-283 (372)
145 4gt6_A Cell surface protein; l 99.3 5.5E-11 1.9E-15 122.5 21.3 133 357-502 258-390 (394)
146 3g39_A Variable lymphocyte rec 99.3 3.6E-12 1.2E-16 114.5 10.0 108 366-482 11-118 (170)
147 4gt6_A Cell surface protein; l 99.3 1.2E-10 4.2E-15 119.9 22.0 328 70-478 58-390 (394)
148 2r9u_A Variable lymphocyte rec 99.3 6.1E-12 2.1E-16 113.4 9.7 106 367-481 15-120 (174)
149 2ifg_A High affinity nerve gro 99.1 8.4E-11 2.9E-15 119.0 9.4 103 368-479 12-116 (347)
150 2ifg_A High affinity nerve gro 99.1 1.4E-10 4.7E-15 117.4 9.5 108 392-507 11-120 (347)
151 4h09_A Hypothetical leucine ri 99.0 1.5E-08 5.2E-13 103.6 21.8 145 334-489 211-355 (379)
152 4h09_A Hypothetical leucine ri 99.0 2.6E-08 8.8E-13 101.9 22.5 294 127-468 63-358 (379)
153 2ra8_A Uncharacterized protein 99.0 3.8E-10 1.3E-14 113.7 5.8 185 312-501 135-341 (362)
154 2ra8_A Uncharacterized protein 98.9 4.2E-09 1.4E-13 106.0 10.0 117 315-432 192-321 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 1.2E-08 4E-13 92.7 4.9 96 359-455 31-136 (185)
156 1io0_A Tropomodulin; LRR prote 98.7 1.3E-08 4.4E-13 92.4 4.8 94 337-431 33-136 (185)
157 3rw6_A Nuclear RNA export fact 98.4 1.3E-07 4.3E-12 90.2 3.1 79 416-496 168-257 (267)
158 3e4g_A ATP synthase subunit S, 98.3 2.5E-07 8.5E-12 81.7 2.7 14 130-143 82-95 (176)
159 3e4g_A ATP synthase subunit S, 98.2 7.2E-07 2.5E-11 78.7 4.7 84 75-168 61-150 (176)
160 3rw6_A Nuclear RNA export fact 98.2 5.9E-07 2E-11 85.6 2.5 84 423-508 148-238 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 1.1E-05 3.7E-10 72.6 4.9 13 390-402 71-83 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 2.2E-05 7.6E-10 70.6 5.2 114 388-502 40-169 (197)
163 3rfe_A Platelet glycoprotein I 97.5 0.00011 3.9E-09 61.6 6.2 97 445-549 11-108 (130)
164 3rfe_A Platelet glycoprotein I 96.1 0.0055 1.9E-07 51.2 4.9 56 422-479 12-68 (130)
165 2lz0_A Uncharacterized protein 50.8 21 0.00072 27.5 4.7 38 334-372 14-51 (100)
166 2lz0_A Uncharacterized protein 44.7 45 0.0015 25.6 5.7 48 302-350 6-53 (100)
167 2ks1_B Epidermal growth factor 32.3 15 0.00051 23.4 0.9 11 579-589 27-37 (44)
168 2jwa_A Receptor tyrosine-prote 31.0 9.3 0.00032 24.3 -0.2 24 566-589 14-37 (44)
169 2k1k_A Ephrin type-A receptor 30.8 12 0.00042 23.0 0.3 19 565-583 12-30 (38)
170 2l9u_A Receptor tyrosine-prote 29.1 9.9 0.00034 22.3 -0.3 25 568-592 11-35 (40)
171 2l2t_A Receptor tyrosine-prote 28.3 18 0.00062 23.0 0.8 6 584-589 31-36 (44)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-61 Score=546.06 Aligned_cols=515 Identities=30% Similarity=0.428 Sum_probs=376.7
Q ss_pred ccccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCC-----------CCCCccEEEcCCcccCCCCcchHhh
Q 037539 3 YKHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFF-----------ETSNINTFFLNTVSVTKSSDWFQVV 71 (622)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-----------~~~~L~~L~Ls~n~l~~~~~~~~~l 71 (622)
++++++|+++++.+.+.+|..+ ..++++|++||+++|.++ ++++|++|++++|.+++... +
T Consensus 125 l~~L~~L~Ls~n~l~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~ 196 (768)
T 3rgz_A 125 CSGLKFLNVSSNTLDFPGKVSG----GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----V 196 (768)
T ss_dssp CTTCCEEECCSSEEECCSSCCS----CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----C
T ss_pred CCCCCEEECcCCccCCcCCHHH----hccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC----c
Confidence 4566777777776644333222 235666666666666653 22556666666665555422 2
Q ss_pred cCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhccc----------------ccCCCccc
Q 037539 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLK----------------AFQHMVSL 135 (622)
Q Consensus 72 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~----------------~l~~l~~L 135 (622)
.++++|++|++++|.+++..+ . +.++ ++|++|++++|.+++ .+|..+..+. ....+++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~--~-l~~l-~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L 271 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIP--F-LGDC-SALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL 271 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCC--B-CTTC-CSCCEEECCSSCCCS-CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTC
T ss_pred ccCCcCCEEECcCCcCCCCCc--c-cccC-CCCCEEECcCCcCCC-cccHHHhcCCCCCEEECCCCcccCccCccccCCC
Confidence 455555555555555555444 2 4455 555555555555554 3333331110 00134455
Q ss_pred cEEEeecccCCCCCchhhcCC-ccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC--CCCCCCC
Q 037539 136 KSLYLSDSELEGGIPKFFGNM-CSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH--LGGFSSL 212 (622)
Q Consensus 136 ~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~--l~~l~~L 212 (622)
++|++++|.+++.+|..+... ++|++|++++|.+++..|..+.. +++ |++|++++|.+.+.+|. +..+++|
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-----l~~-L~~L~L~~n~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-----CSL-LESLALSSNNFSGELPMDTLLKMRGL 345 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG-----CTT-CCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc-----CCC-ccEEECCCCcccCcCCHHHHhcCCCC
Confidence 555555555555555555443 56666666666665555555333 333 66666666666554443 5666666
Q ss_pred CEEEeecccCCccCccccCCCC-CCCEEEccCCCCccccccc--------c----cCCCCcccCCchhHHhcCCCCcEEE
Q 037539 213 EAWSLDVNCLNGTIDKSLSQLS-KLESLSLDGNSLRAISLCI--------L----TSPIGISDSIPDWFWDLSNKLSYLN 279 (622)
Q Consensus 213 ~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~--------~----~~~~~l~~~~~~~~~~~~~~L~~L~ 279 (622)
++|++++|.+++.+|..+..++ +|++|++++|.+++..... + ++.+.+++.+|..+... ++|+.|+
T Consensus 346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~ 424 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLH 424 (768)
T ss_dssp CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEE
T ss_pred CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-CCCCEEE
Confidence 6666666666655666665555 6666666666554322111 1 56666777788777664 5899999
Q ss_pred ccCCcCcccCCCC-----cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCC
Q 037539 280 LSNNHFRGKLPDL-----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG 354 (622)
Q Consensus 280 l~~n~l~~~~~~~-----~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~ 354 (622)
+++|++.+..|.. +|+.|++++|.+.+.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504 (768)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC
Confidence 9999988877753 79999999999999999999999999999999999998999999999999999999999999
Q ss_pred CCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHh----------------------
Q 037539 355 KLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENE---------------------- 412 (622)
Q Consensus 355 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---------------------- 412 (622)
.+|..++.+++|++|++++|.+.+.+|..+. .+++|++|++++|++.+.+|..+...
T Consensus 505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGG-GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred cCChHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence 9999999999999999999999888998877 79999999999999998887654210
Q ss_pred -------------------------------------------HhhhcCCccEEECCCCcCCccchHHhhcccccceeec
Q 037539 413 -------------------------------------------YKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNL 449 (622)
Q Consensus 413 -------------------------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 449 (622)
.+..+++|+.|||++|++++.+|..+++++.|+.|+|
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L 663 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEEC
T ss_pred cccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeC
Confidence 1123578999999999999999999999999999999
Q ss_pred CCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCCCCC
Q 037539 450 SRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGL 529 (622)
Q Consensus 450 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~ 529 (622)
++|.+++.+|..++++++|++|||++|++++.+|..+..+++|++||+++|+++|.+|.+.++.++....+.|||.+||.
T Consensus 664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred cCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q 037539 530 PLANMCLDEE 539 (622)
Q Consensus 530 ~~~~~C~~~~ 539 (622)
|.. .|....
T Consensus 744 ~l~-~C~~~~ 752 (768)
T 3rgz_A 744 PLP-RCDPSN 752 (768)
T ss_dssp TSC-CCCSCC
T ss_pred CCc-CCCCCc
Confidence 886 785443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-56 Score=505.07 Aligned_cols=492 Identities=30% Similarity=0.426 Sum_probs=376.4
Q ss_pred CccccCCCCcccchhhHHHHH--hhcccccccCcCCcEEeCCCCCCC---------CCCCccEEEcCCcccCCC-CcchH
Q 037539 2 QYKHIPHTSNSQQNFIVDLLI--NLGQHLEVNIERLQELVLGLGKFF---------ETSNINTFFLNTVSVTKS-SDWFQ 69 (622)
Q Consensus 2 ~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~L~~n~i~---------~~~~L~~L~Ls~n~l~~~-~~~~~ 69 (622)
+++++++|+++++.+.+.+|. .+. ++++|++|++++|.+. .+++|++|++++|.+++. +....
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTTLTSLG-----SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGGGGGGG-----GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred cCCCCCEEECCCCcCCCcCCChHHHh-----CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhh
Confidence 457888899999888666665 555 8999999999998763 338899999999998887 44222
Q ss_pred hhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCC
Q 037539 70 VVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGI 149 (622)
Q Consensus 70 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 149 (622)
.+.++++|++|++++|.+.+..+ +..+ ++|++|++++|.+++ .+|. ++.+++|++|++++|.+++..
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~----~~~l-~~L~~L~Ls~n~l~~-~~~~-------l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVD----VSRC-VNLEFLDVSSNNFST-GIPF-------LGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCB----CTTC-TTCCEEECCSSCCCS-CCCB-------CTTCCSCCEEECCSSCCCSCH
T ss_pred hhccCCCCCEEECCCCcccccCC----cccC-CcCCEEECcCCcCCC-CCcc-------cccCCCCCEEECcCCcCCCcc
Confidence 37899999999999999887655 3677 999999999999986 4443 478899999999999999889
Q ss_pred chhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCC-CCCCCEEEeecccCCccCc
Q 037539 150 PKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGG-FSSLEAWSLDVNCLNGTID 227 (622)
Q Consensus 150 ~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~-l~~L~~L~L~~n~l~~~~~ 227 (622)
|..+..+++|++|++++|.+.+..|.. .+++ |++|++++|.+++.+|. +.. +++|++|++++|.+++..|
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~-------~l~~-L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPL-------PLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCC-------CCTT-CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred cHHHhcCCCCCEEECCCCcccCccCcc-------ccCC-CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence 999999999999999999998766642 3334 88888888887776666 544 4778888888888777777
Q ss_pred cccCCCCCCCEEEccCCCCccc-ccccc----------cCCCCcccCCchhHHhcCCCCcEEEccCCcCcc---------
Q 037539 228 KSLSQLSKLESLSLDGNSLRAI-SLCIL----------TSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRG--------- 287 (622)
Q Consensus 228 ~~l~~l~~L~~L~l~~n~l~~~-~~~~~----------~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--------- 287 (622)
..|+.+++|++|++++|.+++. +...+ ++.+.+++.+|..+....++|+.|++++|++.+
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence 7777777888888887777632 21101 556666666777666554455555555555543
Q ss_pred -----------------cCCCC-----cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEE
Q 037539 288 -----------------KLPDL-----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTL 345 (622)
Q Consensus 288 -----------------~~~~~-----~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 345 (622)
..|.. .|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+++|++|
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 33321 46666666666666666666666777777777777766667777777777777
Q ss_pred eeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEEC
Q 037539 346 NLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDL 425 (622)
Q Consensus 346 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L 425 (622)
++++|.+++..|..+..+++|++|++++|.+.+.+|.++. .+++|++|++++|++.+.+|..+. .+++|+.|++
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~L 545 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELG-----DCRSLIWLDL 545 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGG-----GCTTCCEEEC
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHc-----CCCCCCEEEC
Confidence 7777777777777777778888888888887667777766 678888888888888877777665 6888888888
Q ss_pred CCCcCCccchHHhh------------------------------------------------------------------
Q 037539 426 SSNKLDGAIPEEIM------------------------------------------------------------------ 439 (622)
Q Consensus 426 ~~n~l~~~~~~~~~------------------------------------------------------------------ 439 (622)
++|++++.+|..+.
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 88888776665442
Q ss_pred ----cccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCc
Q 037539 440 ----DLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQS 514 (622)
Q Consensus 440 ----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~ 514 (622)
.+++|+.|+|++|++++.+|..++++++|+.|+|++|++++.+|..++.+++|++||+++|+++|.+|.. ..+..
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 2467888999999999999999999999999999999999999999999999999999999999999875 45667
Q ss_pred cCcccccCCcC
Q 037539 515 FNASVYAGNLE 525 (622)
Q Consensus 515 l~~~~~~~n~~ 525 (622)
+..+.+++|+.
T Consensus 706 L~~L~ls~N~l 716 (768)
T 3rgz_A 706 LTEIDLSNNNL 716 (768)
T ss_dssp CSEEECCSSEE
T ss_pred CCEEECcCCcc
Confidence 77777777744
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-52 Score=475.91 Aligned_cols=498 Identities=23% Similarity=0.198 Sum_probs=352.8
Q ss_pred cccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCC---------CCCCCccEEEcCCcccCCC-CcchHhhcC
Q 037539 4 KHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKF---------FETSNINTFFLNTVSVTKS-SDWFQVVAK 73 (622)
Q Consensus 4 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i---------~~~~~L~~L~Ls~n~l~~~-~~~~~~l~~ 73 (622)
+++++|+++++.+ +.+ ....+.++++|++|||++|.. .++++|++|+|++|.+++. +. .|.+
T Consensus 24 ~~l~~LdLs~N~i-~~i----~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~---~~~~ 95 (844)
T 3j0a_A 24 NTTERLLLSFNYI-RTV----TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD---AFQG 95 (844)
T ss_dssp TTCCEEEEESCCC-CEE----CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT---SSCS
T ss_pred CCcCEEECCCCcC-Ccc----ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh---HccC
Confidence 4455667776664 222 122334777888888877732 3347788888888877777 66 6777
Q ss_pred CCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhh
Q 037539 74 LHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFF 153 (622)
Q Consensus 74 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 153 (622)
+++|++|+|++|.+++..+....+.++ ++|++|++++|.+++...+.. |+++++|++|++++|.+++..+..+
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~------~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNL-KALTRLDLSKNQIRSLYLHPS------FGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSC-SSCCEEEEESCCCCCCCCCGG------GGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred CcccCEeeCcCCCCCcccccCcccccc-CCCCEEECCCCcccccccchh------HhhCCCCCEEECCCCcCCeeCHHHc
Confidence 888888888888777654411236666 788888888887765222222 3677788888888887777777777
Q ss_pred cCC--ccCcEeEeecCCCCCcCchhhhhcc--ccccCCCcCEEEccCCcccccCCC-C----------------------
Q 037539 154 GNM--CSLKKLRLSYNKLSGQYSQVIQNLS--FGCVVNSLEGLYLRWNDFTGPIPH-L---------------------- 206 (622)
Q Consensus 154 ~~l--~~L~~L~L~~n~i~~~~~~~~~~l~--l~~~~~~L~~L~L~~n~~~~~~~~-l---------------------- 206 (622)
..+ ++|+.|++++|.+.+..|..+.... +.. . +|++|++++|.+.+..+. +
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~-~-~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN-M-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT-C-CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred ccccCCccceEECCCCccccccccchhhcCCcccc-C-ceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 666 6777777777777766655432221 111 1 277888887765543332 1
Q ss_pred --------------CC--CCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHh
Q 037539 207 --------------GG--FSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWD 270 (622)
Q Consensus 207 --------------~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 270 (622)
.+ .++|+.|++++|.+.+..+..|..+++|++|++++|++++. .|..+ .
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--------------~~~~~-~ 311 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI--------------ADEAF-Y 311 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE--------------CTTTT-T
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC--------------ChHHh-c
Confidence 11 25677777777777777777777777777777777777632 12222 3
Q ss_pred cCCCCcEEEccCCcCcccCCCC-----cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEE
Q 037539 271 LSNKLSYLNLSNNHFRGKLPDL-----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTL 345 (622)
Q Consensus 271 ~~~~L~~L~l~~n~l~~~~~~~-----~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 345 (622)
.+++|++|++++|.+.+..|.. +|+.|++++|.+.+..+..|..+++|++|++++|.+++. ..+++|+.|
T Consensus 312 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L 386 (844)
T 3j0a_A 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDI 386 (844)
T ss_dssp TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEE
T ss_pred CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchh
Confidence 3457888888888877655532 678888888888777777777888888888888877632 236778888
Q ss_pred eeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEEC
Q 037539 346 NLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDL 425 (622)
Q Consensus 346 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L 425 (622)
++++|++. .+|.. ..+++.|++++|.+.+.-.......+++|++|++++|++++..+.... ..+++|+.|++
T Consensus 387 ~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~~~~~L~~L~L 458 (844)
T 3j0a_A 387 FLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP----SENPSLEQLFL 458 (844)
T ss_dssp EEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS----CSCTTCCBCEE
T ss_pred ccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc----ccCCccccccC
Confidence 88888877 44432 467888888888884322222233689999999999999865543221 15789999999
Q ss_pred CCCcCC-----ccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCC
Q 037539 426 SSNKLD-----GAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500 (622)
Q Consensus 426 ~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 500 (622)
++|.++ +..+..|..+++|++|+|++|.+++..+..|.++++|+.|+|++|++++..+..+. ++|+.|++++|
T Consensus 459 s~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N 536 (844)
T 3j0a_A 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536 (844)
T ss_dssp ESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred CCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence 999986 34456788999999999999999998889999999999999999999987777665 89999999999
Q ss_pred cCcccCCCCCcCCccCcccccCCcCCCCCCC-------------------CCCCCCCCCCCCCCCCCCC
Q 037539 501 NLSGKIPSGTQLQSFNASVYAGNLELCGLPL-------------------ANMCLDEESTPGPGTDDDS 550 (622)
Q Consensus 501 ~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~-------------------~~~C~~~~~~~~~~~~~~~ 550 (622)
++++..|. .+..+..+.+.+||+.|+|+. .+.|..|....|....+..
T Consensus 537 ~l~~~~~~--~~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~ 603 (844)
T 3j0a_A 537 QLLAPNPD--VFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLS 603 (844)
T ss_dssp CCCCCCSC--CCSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCC
T ss_pred cCCCCChh--HhCCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCc
Confidence 99988885 466888889999999998753 2578888877776655443
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-51 Score=460.63 Aligned_cols=502 Identities=20% Similarity=0.195 Sum_probs=355.0
Q ss_pred ccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCCC--------CCccEEEcCCcccCCC-CcchHhhcCCC
Q 037539 5 HIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFET--------SNINTFFLNTVSVTKS-SDWFQVVAKLH 75 (622)
Q Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~-~~~~~~l~~l~ 75 (622)
++++|+++++.+ ++++. ..++++++|++|++++|.+++. ++|++|++++|.++.. +. .|.+++
T Consensus 26 ~l~~L~Ls~n~l-~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~---~~~~l~ 97 (680)
T 1ziw_A 26 NITVLNLTHNQL-RRLPA----ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK---TFAFCT 97 (680)
T ss_dssp TCSEEECCSSCC-CCCCG----GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT---TTTTCT
T ss_pred CCcEEECCCCCC-CCcCH----HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh---hhccCC
Confidence 566778887775 33332 2234789999999999988665 8899999999998888 44 688899
Q ss_pred CCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhc-
Q 037539 76 SLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFG- 154 (622)
Q Consensus 76 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~- 154 (622)
+|++|++++|.+++..+ ..+.++ ++|++|++++|.+++ ..|. .+..+++|++|++++|.+++..+..+.
T Consensus 98 ~L~~L~L~~n~l~~~~~--~~~~~l-~~L~~L~Ls~n~l~~-~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKN--NPFVKQ-KNLITLDLSHNGLSS-TKLG------TQVQLENLQELLLSNNKIQALKSEELDI 167 (680)
T ss_dssp TCSEEECCSSCCCCCCS--CTTTTC-TTCCEEECCSSCCSC-CCCC------SSSCCTTCCEEECCSSCCCCBCHHHHGG
T ss_pred CCCEEECCCCccCccCh--hHcccc-CCCCEEECCCCcccc-cCch------hhcccccCCEEEccCCcccccCHHHhhc
Confidence 99999999999888776 677888 899999999998876 3333 346788888888888888876666554
Q ss_pred -CCccCcEeEeecCCCCCcCchhhhhcc-c-----c----------------ccCC------------------------
Q 037539 155 -NMCSLKKLRLSYNKLSGQYSQVIQNLS-F-----G----------------CVVN------------------------ 187 (622)
Q Consensus 155 -~l~~L~~L~L~~n~i~~~~~~~~~~l~-l-----~----------------~~~~------------------------ 187 (622)
.+++|++|++++|.+++..|..+..+. + . ..+.
T Consensus 168 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 247 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247 (680)
T ss_dssp GTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGG
T ss_pred cccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCc
Confidence 457888888888887776665543321 0 0 0012
Q ss_pred -CcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCccc------c------cc-
Q 037539 188 -SLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAI------S------LC- 252 (622)
Q Consensus 188 -~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~------~------~~- 252 (622)
+|++|++++|.+.+..+. ++.+++|++|++++|.+++..+..|..+++|++|++++|...+. + ..
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 144445544444444433 44455555555555555444444444444555554444322110 0 00
Q ss_pred -----c-ccCCCCcccCCchhHHhcCCCCcEEEccCCcCccc-CC--------CCcccEEeCCCCcCccccCccccCCCC
Q 037539 253 -----I-LTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGK-LP--------DLSLRFDDLSSNLLSGGLPDCWLHFDR 317 (622)
Q Consensus 253 -----~-~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--------~~~L~~L~ls~n~l~~~~~~~~~~~~~ 317 (622)
. -++.+.+++..+..+. .+++|++|++++|.+... ++ ...++.|++++|.+.+..+..+..+++
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTT-TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCEEECCCCccCCCChhHhc-cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 0 0333444443333332 234666666666653311 11 015777777888888777888888888
Q ss_pred CCEEEccCCcccccCC-CccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCccc--ccCchhHHhhcccccEe
Q 037539 318 LFILNLANNRLSGKIP-DSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIF--GEIPTWIGESLQNLIVL 394 (622)
Q Consensus 318 L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~--~~~~~~~~~~l~~L~~L 394 (622)
|+.|++++|++++.++ ..+..+++|++|++++|++.+..+..|..+++|++|++++|.+. +.+|..+. .+++|++|
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L 485 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTIL 485 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEE
Confidence 9999999998876555 57788888999999998888777788888889999999888874 45566655 78999999
Q ss_pred ecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccch--------HHhhcccccceeecCCccccCCCccccCCCC
Q 037539 395 SLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIP--------EEIMDLVGLIALNLSRNHLTGPITPKIGELT 466 (622)
Q Consensus 395 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 466 (622)
++++|++++..+..+. .+++|++|++++|.+++..+ ..+.++++|++|+|++|.++...+..|.+++
T Consensus 486 ~Ls~N~l~~i~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 486 DLSNNNIANINDDMLE-----GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp ECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ECCCCCCCcCChhhhc-----cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 9999999877776665 78999999999999875422 2378889999999999999965556789999
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCC--cCCccCcccccCCcCCCCCCC
Q 037539 467 SLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT--QLQSFNASVYAGNLELCGLPL 531 (622)
Q Consensus 467 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~--~~~~l~~~~~~~n~~lc~~~~ 531 (622)
+|+.|+|++|++++..+..|..+++|++|++++|++++..|... .+..+..+.+.+||+.|+|+.
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99999999999998777778899999999999999987655421 467788889999999998864
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.7e-52 Score=454.95 Aligned_cols=495 Identities=20% Similarity=0.188 Sum_probs=247.0
Q ss_pred cCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCC--------CCCccEEEcCCcccCCC-CcchHhhcCCCC
Q 037539 6 IPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFE--------TSNINTFFLNTVSVTKS-SDWFQVVAKLHS 76 (622)
Q Consensus 6 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~--------~~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~ 76 (622)
+++|+++++.+ +++ ....++++++|++|++++|.+.+ +++|++|++++|.+++. +. .+.++++
T Consensus 35 l~~L~Ls~n~i-~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~ 106 (606)
T 3t6q_A 35 TECLEFSFNVL-PTI----QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET---ALSGPKA 106 (606)
T ss_dssp CCEEECTTCCC-SEE----CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT---TTSSCTT
T ss_pred CcEEEccCCcc-CcC----ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh---hhccccc
Confidence 44555665554 222 11223366666666666665532 26666666666666665 54 5666666
Q ss_pred CCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCC
Q 037539 77 LKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNM 156 (622)
Q Consensus 77 L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 156 (622)
|++|++++|.+++..+ ..+..+ ++|++|++++|+++++..|.. ..+++|++|++++|.+++..+..|+.+
T Consensus 107 L~~L~L~~n~i~~l~~--~~~~~l-~~L~~L~L~~n~l~~~~~~~~-------~~l~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDF--IPLHNQ-KTLESLYLGSNHISSIKLPKG-------FPTEKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp CCEEECTTSCCSCGGG--SCCTTC-TTCCEEECCSSCCCCCCCCTT-------CCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred ccEeeccccCcccCCc--chhccC-CcccEEECCCCcccccCcccc-------cCCcccCEEEcccCcccccChhhhhhh
Confidence 6666666666666544 445555 666666666666665333322 236666666666666666556666666
Q ss_pred ccCc--EeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccc-------------------------cC-CC-CC
Q 037539 157 CSLK--KLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTG-------------------------PI-PH-LG 207 (622)
Q Consensus 157 ~~L~--~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~-------------------------~~-~~-l~ 207 (622)
++|+ .|++++|.+++..|..+... +|++|++++|.... .+ +. +.
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~ 249 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSA-------VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTC-------EEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGG
T ss_pred cccceeEEecCCCccCccChhHhhhc-------cccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhc
Confidence 6666 66666666666555443221 12222222221000 00 00 00
Q ss_pred CCC--CCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcC
Q 037539 208 GFS--SLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHF 285 (622)
Q Consensus 208 ~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l 285 (622)
.+. +|++|++++|.+++..+..|..+++|++|++++|+++ .+|..+.. +++|++|++++|.+
T Consensus 250 ~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------~lp~~l~~-l~~L~~L~l~~n~l 313 (606)
T 3t6q_A 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS---------------ELPSGLVG-LSTLKKLVLSANKF 313 (606)
T ss_dssp GGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS---------------CCCSSCCS-CTTCCEEECTTCCC
T ss_pred hhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC---------------CCChhhcc-cccCCEEECccCCc
Confidence 010 3444555555555444444555555555555555544 23333222 23455555555555
Q ss_pred cccCCCC-----cccEEeCCCCcCccccCc-cccCCCCCCEEEccCCcccccC--CCccCCCCCccEEeeeCCcCCCCCC
Q 037539 286 RGKLPDL-----SLRFDDLSSNLLSGGLPD-CWLHFDRLFILNLANNRLSGKI--PDSMGFLNNIWTLNLHNNRLTGKLP 357 (622)
Q Consensus 286 ~~~~~~~-----~L~~L~ls~n~l~~~~~~-~~~~~~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~ 357 (622)
.+..|.. +|+.|++++|.+.+.++. .+..+++|++|++++|++++.. +..+..+++|++|++++|.+.+..+
T Consensus 314 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 393 (606)
T 3t6q_A 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393 (606)
T ss_dssp SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH
Confidence 4433311 455555555554433322 2445555555555555554333 3444555555555555555544444
Q ss_pred ccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCcc---c
Q 037539 358 SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA---I 434 (622)
Q Consensus 358 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~ 434 (622)
..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+. .+++|++|++++|++.+. .
T Consensus 394 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~ 468 (606)
T 3t6q_A 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-----GLPALQHLNLQGNHFPKGNIQK 468 (606)
T ss_dssp TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-----TCTTCCEEECTTCBCGGGEECS
T ss_pred HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh-----CCCCCCEEECCCCCCCcccccc
Confidence 45555555555555555553333333222455555555555555544444333 455555555555555431 1
Q ss_pred hHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCC
Q 037539 435 PEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQ 513 (622)
Q Consensus 435 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~ 513 (622)
+..+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..|..+..++.| .|++++|++++..|.. ..+.
T Consensus 469 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~ 547 (606)
T 3t6q_A 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS 547 (606)
T ss_dssp SCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHH
T ss_pred chhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCC
Confidence 1334455555555555555554444555555555555555555555555555555555 5555555555433322 2233
Q ss_pred ccCcccccCCcCCCCCC------------------CCCCCCCCCCCCCCCCC
Q 037539 514 SFNASVYAGNLELCGLP------------------LANMCLDEESTPGPGTD 547 (622)
Q Consensus 514 ~l~~~~~~~n~~lc~~~------------------~~~~C~~~~~~~~~~~~ 547 (622)
.++.+.+.+||+.|+|+ ....|..|...+|....
T Consensus 548 ~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~ 599 (606)
T 3t6q_A 548 QQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLS 599 (606)
T ss_dssp TSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGG
T ss_pred CCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeCCchHhCCCeee
Confidence 44444455555555443 22457777666655443
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.8e-51 Score=446.96 Aligned_cols=461 Identities=21% Similarity=0.202 Sum_probs=386.2
Q ss_pred CccccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCC--------CCCccEEEcCCcccCCC-CcchHhhc
Q 037539 2 QYKHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFE--------TSNINTFFLNTVSVTKS-SDWFQVVA 72 (622)
Q Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~--------~~~L~~L~Ls~n~l~~~-~~~~~~l~ 72 (622)
+++++++|+++++.+.+-.|.. ++++++|++|++++|.+.+ +++|++|++++|.+++. +. .+.
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~---~~~ 126 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDT-----FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI---PLH 126 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTT-----TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGS---CCT
T ss_pred cCccceEEECCCCccceeChhh-----ccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcc---hhc
Confidence 4678889999998763322333 4489999999999998743 39999999999999997 55 789
Q ss_pred CCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCcccc--EEEeecccCCCCCc
Q 037539 73 KLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLK--SLYLSDSELEGGIP 150 (622)
Q Consensus 73 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~--~L~L~~n~l~~~~~ 150 (622)
++++|++|++++|.+.+... ..+..+ ++|++|++++|.+++ ..|.. ++.+++|+ +|++++|.+.+..|
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~--~~~~~l-~~L~~L~L~~n~l~~-~~~~~------~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 127 NQKTLESLYLGSNHISSIKL--PKGFPT-EKLKVLDFQNNAIHY-LSKED------MSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCC--CTTCCC-TTCCEEECCSSCCCE-ECHHH------HHTTTTCCSEEEECTTCCCCEECT
T ss_pred cCCcccEEECCCCcccccCc--ccccCC-cccCEEEcccCcccc-cChhh------hhhhcccceeEEecCCCccCccCh
Confidence 99999999999999998654 355567 999999999999986 33443 46778888 89999999998777
Q ss_pred hhhcCCccCcEeEeecCCCC--------------------------CcCchhhhhccccccC-CCcCEEEccCCcccccC
Q 037539 151 KFFGNMCSLKKLRLSYNKLS--------------------------GQYSQVIQNLSFGCVV-NSLEGLYLRWNDFTGPI 203 (622)
Q Consensus 151 ~~l~~l~~L~~L~L~~n~i~--------------------------~~~~~~~~~l~l~~~~-~~L~~L~L~~n~~~~~~ 203 (622)
..+.. .+|+.|++++|... ...+.. +..+. .+|++|++++|.+++..
T Consensus 197 ~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~-----~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 197 GAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV-----FEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp TTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG-----GGGGGGSEEEEEECTTCCCSSCC
T ss_pred hHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhH-----hchhhcCceeEEEeecCccCccC
Confidence 76654 68999999887511 011111 11111 13999999999999888
Q ss_pred CC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccC
Q 037539 204 PH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSN 282 (622)
Q Consensus 204 ~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 282 (622)
+. |+.+++|++|++++|.++ .+|..+..+++|++|++++|.+++. .|..+ ..+++|++|++++
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~--------------~~~~~-~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL--------------CQISA-SNFPSLTHLSIKG 334 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBG--------------GGGCG-GGCTTCSEEECCS
T ss_pred HHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcC--------------chhhh-hccCcCCEEECCC
Confidence 77 999999999999999999 6788899999999999999998743 23333 3457999999999
Q ss_pred CcCcccCCCC------cccEEeCCCCcCcccc--CccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCC
Q 037539 283 NHFRGKLPDL------SLRFDDLSSNLLSGGL--PDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG 354 (622)
Q Consensus 283 n~l~~~~~~~------~L~~L~ls~n~l~~~~--~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~ 354 (622)
|.+.+..|.- +|++|++++|.+.+.. +..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 9988666541 8999999999998765 7789999999999999999998989999999999999999999986
Q ss_pred CCCc-cccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccC---ChhhhHhHhhhcCCccEEECCCCcC
Q 037539 355 KLPS-PLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNI---PYQFENEYKSTLGLVRCLDLSSNKL 430 (622)
Q Consensus 355 ~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~~l~~L~~L~L~~n~l 430 (622)
..+. .+..+++|++|++++|.+.+..|..+. .+++|++|++++|++.+.. +..+. .+++|+.|++++|++
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~-----~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQ-----TLGRLEILVLSFCDL 488 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGG-----GCTTCCEEECTTSCC
T ss_pred cccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhhc-----cCCCccEEECCCCcc
Confidence 6554 589999999999999999666666555 7999999999999998632 23343 799999999999999
Q ss_pred CccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 431 DGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 431 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
++..|..|..+++|++|++++|++++..|+.+.++++| .|++++|++++..|..+..+++|++|++++|++.|.++..
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 98889999999999999999999999999999999999 9999999999999999999999999999999999987743
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-51 Score=451.77 Aligned_cols=456 Identities=20% Similarity=0.179 Sum_probs=291.2
Q ss_pred cCCcEEeCCCCCCCCC--------CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCc
Q 037539 33 ERLQELVLGLGKFFET--------SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTS 103 (622)
Q Consensus 33 ~~L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~ 103 (622)
+++++|++++|.+++. ++|++|++++|.+++. +. .|.++++|++|+|++|.+++..| ..+.++ ++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~---~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l-~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK---AWHGLHHLSNLILTGNPIQSFSP--GSFSGL-TS 105 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT---TTTTCTTCCEEECTTCCCCCCCT--TSSTTC-TT
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHH---HhhchhhcCEeECCCCcccccCh--hhcCCc-cc
Confidence 6788888888876433 7888888888888877 65 67888888888888888887777 677777 88
Q ss_pred ccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCC-CCchhhcCCccCcEeEeecCCCCCcCchhhhhccc
Q 037539 104 IETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG-GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSF 182 (622)
Q Consensus 104 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l 182 (622)
|++|++++|.+++ ++ ...++.+++|++|++++|.+.+ .+|..|+++++|++|++++|.+++..+..+..+.
T Consensus 106 L~~L~L~~n~l~~--~~-----~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~- 177 (606)
T 3vq2_A 106 LENLVAVETKLAS--LE-----SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR- 177 (606)
T ss_dssp CCEEECTTSCCCC--SS-----SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH-
T ss_pred CCEEEccCCcccc--cc-----ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh-
Confidence 8888888888875 11 1235778888888888888875 4578888888888888888888877777655433
Q ss_pred cccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCc-cCccc--------------------------------
Q 037539 183 GCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNG-TIDKS-------------------------------- 229 (622)
Q Consensus 183 ~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~-------------------------------- 229 (622)
+++..+++|++++|.+++..+......+|++|++++|.+++ ..+..
T Consensus 178 -~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~ 256 (606)
T 3vq2_A 178 -ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256 (606)
T ss_dssp -HCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT
T ss_pred -ccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhh
Confidence 12112347888888777666653333377777777776541 12222
Q ss_pred ------------------------cCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcC
Q 037539 230 ------------------------LSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHF 285 (622)
Q Consensus 230 ------------------------l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l 285 (622)
+..+++|++|++++|.++. +| ++ ..+++|+.|++++|.+
T Consensus 257 ~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---------------l~-~l-~~~~~L~~L~l~~n~l 319 (606)
T 3vq2_A 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY---------------LE-DV-PKHFKWQSLSIIRCQL 319 (606)
T ss_dssp TGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC---------------CC-CC-CTTCCCSEEEEESCCC
T ss_pred hhhhccHhheeccccccccccccccccCCCCCEEEecCccchh---------------hh-hc-cccccCCEEEcccccC
Confidence 3344555555555555442 22 11 1123555555555555
Q ss_pred cccCCCC---cccEEeCCCCcCccccCccccCCCCCCEEEccCCccccc--CCCccCCCCCccEEeeeCCcCCCCCCccc
Q 037539 286 RGKLPDL---SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGK--IPDSMGFLNNIWTLNLHNNRLTGKLPSPL 360 (622)
Q Consensus 286 ~~~~~~~---~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l 360 (622)
+.+|.+ .++.|++++|...+.. .+..+++|++|++++|++++. .+..+..+++|++|++++|.+. ..|..+
T Consensus 320 -~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~ 395 (606)
T 3vq2_A 320 -KQFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANF 395 (606)
T ss_dssp -SSCCCCCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCC
T ss_pred -cccccCCCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhc
Confidence 344432 4555555555333222 344566666666666666544 2555566666666666666665 344566
Q ss_pred cCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCc-cchHHhh
Q 037539 361 RNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDG-AIPEEIM 439 (622)
Q Consensus 361 ~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~ 439 (622)
..+++|++|++++|.+.+..|...+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+ .+|..+.
T Consensus 396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~ 470 (606)
T 3vq2_A 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-----GLTSLNTLKMAGNSFKDNTLSNVFA 470 (606)
T ss_dssp TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-----TCTTCCEEECTTCEEGGGEECSCCT
T ss_pred cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc-----CCCCCCEEECCCCcCCCcchHHhhc
Confidence 66677777777777665444423333566777777777776666655554 56677777777777665 3566666
Q ss_pred cccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCC-ccCc
Q 037539 440 DLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQ-SFNA 517 (622)
Q Consensus 440 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~-~l~~ 517 (622)
.+++|++|++++|.+++..|..+.++++|++|+|++|++++..|..+..+++|++|++++|+++ .+|.. ..+. .++.
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF 549 (606)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence 6777777777777776666666677777777777777777666666777777777777777766 44443 2222 3556
Q ss_pred ccccCCcCCCCCC
Q 037539 518 SVYAGNLELCGLP 530 (622)
Q Consensus 518 ~~~~~n~~lc~~~ 530 (622)
+.+.+||+.|+|+
T Consensus 550 l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 550 FNLTNNSVACICE 562 (606)
T ss_dssp EECCSCCCCCSST
T ss_pred EEccCCCcccCCc
Confidence 6667777777664
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.8e-47 Score=425.08 Aligned_cols=466 Identities=22% Similarity=0.222 Sum_probs=296.3
Q ss_pred cCCcEEeCCCCCCCCC--------CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCc
Q 037539 33 ERLQELVLGLGKFFET--------SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTS 103 (622)
Q Consensus 33 ~~L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~ 103 (622)
+++++|++++|.+++. ++|++|++++|.+++. +. .+.++++|++|+|++|.+++..+ ..+..+ ++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~l~~--~~~~~l-~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE---LCQKLPMLKVLNLQHNELSQLSD--KTFAFC-TN 98 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTT---HHHHCTTCCEEECCSSCCCCCCT--TTTTTC-TT
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHH---HHhcccCcCEEECCCCccCccCh--hhhccC-CC
Confidence 6899999999998766 8999999999999998 77 89999999999999999998766 578888 99
Q ss_pred ccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhcccc
Q 037539 104 IETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFG 183 (622)
Q Consensus 104 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~ 183 (622)
|++|++++|++++ -.|. .|+.+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.. .
T Consensus 99 L~~L~L~~n~l~~-~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---~ 168 (680)
T 1ziw_A 99 LTELHLMSNSIQK-IKNN------PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI---F 168 (680)
T ss_dssp CSEEECCSSCCCC-CCSC------TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG---G
T ss_pred CCEEECCCCccCc-cChh------HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhc---c
Confidence 9999999999975 2222 3588999999999999999888999999999999999999999888776542 2
Q ss_pred ccCCCcCEEEccCCcccccCCC-CCCC---------------------------CCCCEEEeecccCCccCccccCCCCC
Q 037539 184 CVVNSLEGLYLRWNDFTGPIPH-LGGF---------------------------SSLEAWSLDVNCLNGTIDKSLSQLSK 235 (622)
Q Consensus 184 ~~~~~L~~L~L~~n~~~~~~~~-l~~l---------------------------~~L~~L~L~~n~l~~~~~~~l~~l~~ 235 (622)
.+++ |++|++++|.+.+..+. +..+ ++|+.|++++|.+++..+..|..++.
T Consensus 169 ~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 247 (680)
T 1ziw_A 169 ANSS-LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247 (680)
T ss_dssp TTCE-ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGG
T ss_pred cccc-ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCc
Confidence 2344 99999999988876654 4332 34455555555555555555554433
Q ss_pred --CCEEEccCCCCcccccccc----------cCCCCcccCCchhHHhcCCCCcEEEccCCcCcc-----cCCC-------
Q 037539 236 --LESLSLDGNSLRAISLCIL----------TSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRG-----KLPD------- 291 (622)
Q Consensus 236 --L~~L~l~~n~l~~~~~~~~----------~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~------- 291 (622)
|++|++++|.+++.....+ ++.+.+.+..|..+.. +++|+.|++++|...+ .+|.
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT-CTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC-CCCccEEeccchhhhcccccccccccChhhcc
Confidence 6666666655554331111 2333333333333322 2344444444433221 1110
Q ss_pred --CcccEEeCCCCcCccccCccccCCCCCCEEEcc----------------------------CCcccccCCCccCCCCC
Q 037539 292 --LSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLA----------------------------NNRLSGKIPDSMGFLNN 341 (622)
Q Consensus 292 --~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~----------------------------~n~i~~~~~~~~~~l~~ 341 (622)
.+++.|++++|.+.+..+..|.++++|++|+++ +|++++..|..+..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 144555555555554444444444444444444 44444444444555555
Q ss_pred ccEEeeeCCcCCCCCC-ccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCc--ccCChhhhHhHhhhcC
Q 037539 342 IWTLNLHNNRLTGKLP-SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFH--GNIPYQFENEYKSTLG 418 (622)
Q Consensus 342 L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~~~~~l~ 418 (622)
|++|++++|.+.+.++ ..+.++++|++|++++|.+.+..+. .+..+++|+.|++++|.+. +..|..+. .++
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-----~l~ 480 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN-SFALVPSLQRLMLRRVALKNVDSSPSPFQ-----PLR 480 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTT-TTTTCTTCCEEECTTSCCBCTTCSSCTTT-----TCT
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChh-hhhcCcccccchhccccccccccCCcccc-----cCC
Confidence 5555555555543222 3445555555555555554222222 2224555555555555544 23343333 567
Q ss_pred CccEEECCCCcCCccchHHhhcccccceeecCCccccCCCc--------cccCCCCCCCEEeCCCCccCccCCccccCCC
Q 037539 419 LVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPIT--------PKIGELTSLDFLDLSRNLFSGSIPCSLSQLS 490 (622)
Q Consensus 419 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 490 (622)
+|+.|++++|++++..+..|.++++|++|++++|.+++..+ ..+.++++|++|+|++|+++...+..|.+++
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 77777777777776666667777777777777777764321 2366777777777777777754445677777
Q ss_pred CCCEEECcCCcCcccCCCC--CcCCccCcccccCC
Q 037539 491 GLGVLDLSYNNLSGKIPSG--TQLQSFNASVYAGN 523 (622)
Q Consensus 491 ~L~~L~ls~N~l~~~~p~~--~~~~~l~~~~~~~n 523 (622)
+|++|++++|++++ +|.. ..+..++.+.+.+|
T Consensus 561 ~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 561 ELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TCCEEECCSSCCCC-CCTTTTTTCTTCCEEECTTS
T ss_pred CcceeECCCCCCCc-CCHhHhCCCCCCCEEECCCC
Confidence 77777777777774 3432 23455555555555
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-47 Score=422.20 Aligned_cols=489 Identities=20% Similarity=0.146 Sum_probs=392.7
Q ss_pred cccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCCC--------CCccEEEcCCcccCCC-CcchHhhcCC
Q 037539 4 KHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFET--------SNINTFFLNTVSVTKS-SDWFQVVAKL 74 (622)
Q Consensus 4 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~-~~~~~~l~~l 74 (622)
+++++|+++++.+ ++++ ...+.++++|++|++++|.+++. ++|++|++++|.+++. |. .|.++
T Consensus 32 ~~l~~L~Ls~n~l-~~~~----~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~~~l 103 (606)
T 3vq2_A 32 SSTKNIDLSFNPL-KILK----SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG---SFSGL 103 (606)
T ss_dssp TTCCEEECTTSCC-CEEC----TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT---SSTTC
T ss_pred CCcCEEECCCCCc-CEeC----hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh---hcCCc
Confidence 4566788888776 3332 22345899999999999987443 8999999999999998 77 89999
Q ss_pred CCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhc
Q 037539 75 HSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFG 154 (622)
Q Consensus 75 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 154 (622)
++|++|++++|.+++..+ ..+.++ ++|++|++++|.++++.+|..+ +++++|++|++++|.+++..+..|+
T Consensus 104 ~~L~~L~L~~n~l~~~~~--~~~~~l-~~L~~L~L~~n~l~~~~lp~~~------~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 104 TSLENLVAVETKLASLES--FPIGQL-ITLKKLNVAHNFIHSCKLPAYF------SNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp TTCCEEECTTSCCCCSSS--SCCTTC-TTCCEEECCSSCCCCCCCCGGG------GTCTTCCEEECCSSCCCEECTTTTH
T ss_pred ccCCEEEccCCccccccc--cccCCC-CCCCEEeCCCCcccceechHhH------hhcCCCCEEEccCCcceecChhhhh
Confidence 999999999999998877 678888 9999999999999875677765 7889999999999999988888887
Q ss_pred CCccCc----EeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCccc------------------------------
Q 037539 155 NMCSLK----KLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFT------------------------------ 200 (622)
Q Consensus 155 ~l~~L~----~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~------------------------------ 200 (622)
.+++|+ +|++++|.+++..+..+... + |++|++++|.+.
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~------~-L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGI------K-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCCEECTTTTTTC------E-EEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred hhhccccccceeeccCCCcceeCcccccCc------e-eeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 777665 79999999887666553222 3 888888777543
Q ss_pred ----------------------------ccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccc
Q 037539 201 ----------------------------GPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLC 252 (622)
Q Consensus 201 ----------------------------~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 252 (622)
+..+.+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~----- 320 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK----- 320 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-----
T ss_pred cccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-----
Confidence 223336678999999999999974 45 8899999999999999985
Q ss_pred cccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC---cccEEeCCCCcCccc--cCccccCCCCCCEEEccCCc
Q 037539 253 ILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL---SLRFDDLSSNLLSGG--LPDCWLHFDRLFILNLANNR 327 (622)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~L~~L~ls~n~l~~~--~~~~~~~~~~L~~L~L~~n~ 327 (622)
.+|.. .+++|+.|++++|+..+..+.. +|+.|++++|.+.+. .+..+..+++|++|++++|.
T Consensus 321 ----------~lp~~---~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 387 (606)
T 3vq2_A 321 ----------QFPTL---DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387 (606)
T ss_dssp ----------SCCCC---CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred ----------ccccC---CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc
Confidence 55633 4579999999999666554432 899999999999875 48889999999999999999
Q ss_pred ccccCCCccCCCCCccEEeeeCCcCCCCCC-ccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCccc-C
Q 037539 328 LSGKIPDSMGFLNNIWTLNLHNNRLTGKLP-SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGN-I 405 (622)
Q Consensus 328 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~ 405 (622)
+++ .|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+. .+++|++|++++|++.+. +
T Consensus 388 l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~ 465 (606)
T 3vq2_A 388 AII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTL 465 (606)
T ss_dssp EEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEE
T ss_pred ccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcch
Confidence 985 55889999999999999999997777 6899999999999999999777776665 799999999999999873 5
Q ss_pred ChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCcc
Q 037539 406 PYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCS 485 (622)
Q Consensus 406 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 485 (622)
|..+. .+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|+|++|+++ .+|..
T Consensus 466 ~~~~~-----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 466 SNVFA-----NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp CSCCT-----TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred HHhhc-----cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence 66665 7999999999999999888999999999999999999999988999999999999999999999 66777
Q ss_pred ccCCC-CCCEEECcCCcCcccCCCCCcCCccCcccccCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 037539 486 LSQLS-GLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCLDEESTPGPGTDDD 549 (622)
Q Consensus 486 l~~l~-~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~C~~~~~~~~~~~~~~ 549 (622)
+..++ +|++|++++|++.|.++.......+. .+...........|..|....|....+.
T Consensus 540 ~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~-----~~~~~~~~~~~~~C~~p~~~~~~~l~~~ 599 (606)
T 3vq2_A 540 LQHFPKSLAFFNLTNNSVACICEHQKFLQWVK-----EQKQFLVNVEQMTCATPVEMNTSLVLDF 599 (606)
T ss_dssp GGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT-----TSSSSBSSGGGCCCC-------------
T ss_pred HhhhcccCcEEEccCCCcccCCccHHHHHHHH-----cCcccccCCccceeCCChHhCCCEeeec
Confidence 98987 59999999999999887642222221 2222222344467888887776665444
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6e-48 Score=438.81 Aligned_cols=465 Identities=20% Similarity=0.174 Sum_probs=374.4
Q ss_pred CccccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCCC--------CCccEEEcCCcccCCC-CcchHhhc
Q 037539 2 QYKHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFET--------SNINTFFLNTVSVTKS-SDWFQVVA 72 (622)
Q Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~-~~~~~~l~ 72 (622)
.+++++.|+++++..++.++ ...+.++++|++|+|++|.+.+. ++|++|+|++|.+++. +. ...+.
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~----~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~ 120 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTID----KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK-DGYFR 120 (844)
T ss_dssp SCCSCSEEEECTTCCCCEEC----TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCST-TCCCS
T ss_pred ccccCeEEeCCCCCCccccC----HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccccc-Ccccc
Confidence 46788899999987655542 23345899999999999988543 9999999999999985 43 01389
Q ss_pred CCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCC--ccccEEEeecccCCCCCc
Q 037539 73 KLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHM--VSLKSLYLSDSELEGGIP 150 (622)
Q Consensus 73 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~ 150 (622)
++++|++|+|++|.+++..+. ..+.++ ++|++|++++|.+++ ..+..+ ..+ ++|++|++++|.+.+..|
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~-~~~~~L-~~L~~L~Ls~N~i~~-~~~~~l------~~l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLH-PSFGKL-NSLKSIDFSSNQIFL-VCEHEL------EPLQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCC-GGGGTC-SSCCEEEEESSCCCC-CCSGGG------HHHHHCSSCCCEECCSBSCCCCC
T ss_pred ccCCCCEEECCCCcccccccc-hhHhhC-CCCCEEECCCCcCCe-eCHHHc------ccccCCccceEECCCCccccccc
Confidence 999999999999999887552 467888 999999999999987 555544 334 799999999999998888
Q ss_pred hhhcCCcc------CcEeEeecCCCCCcCchhhhhcc-------------------------------cccc-CCCcCEE
Q 037539 151 KFFGNMCS------LKKLRLSYNKLSGQYSQVIQNLS-------------------------------FGCV-VNSLEGL 192 (622)
Q Consensus 151 ~~l~~l~~------L~~L~L~~n~i~~~~~~~~~~l~-------------------------------l~~~-~~~L~~L 192 (622)
..++.+.+ |+.|++++|.+++..+..+.... +..+ ..+|++|
T Consensus 192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L 271 (844)
T 3j0a_A 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271 (844)
T ss_dssp CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence 77776665 99999999988776665543320 1111 1249999
Q ss_pred EccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhc
Q 037539 193 YLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDL 271 (622)
Q Consensus 193 ~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~ 271 (622)
++++|.+.+..+. +..+++|+.|++++|.+++..+..|..+++|++|++++|.+++. .|..+ ..
T Consensus 272 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------------~~~~~-~~ 336 (844)
T 3j0a_A 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL--------------YSSNF-YG 336 (844)
T ss_dssp ECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC--------------CSCSC-SS
T ss_pred ECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc--------------CHHHh-cC
Confidence 9999999988777 99999999999999999999899999999999999999998743 23333 34
Q ss_pred CCCCcEEEccCCcCcccCCCC-----cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEe
Q 037539 272 SNKLSYLNLSNNHFRGKLPDL-----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLN 346 (622)
Q Consensus 272 ~~~L~~L~l~~n~l~~~~~~~-----~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 346 (622)
+++|+.|++++|++.+..+.. +|+.|++++|.+.+. ..+++|+.|++++|+++ .+|.. ..+++.|+
T Consensus 337 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ 407 (844)
T 3j0a_A 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIH 407 (844)
T ss_dssp CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEE
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceee
Confidence 569999999999998666542 899999999998753 23789999999999998 44443 56899999
Q ss_pred eeCCcCCCCCC-ccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEEC
Q 037539 347 LHNNRLTGKLP-SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDL 425 (622)
Q Consensus 347 Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L 425 (622)
+++|.+.+... ..+..+++|++|++++|.+.+..+......+++|+.|++++|.+....+.......+..+++|+.|+|
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEEC
Confidence 99999985432 24568999999999999995544443344579999999999999744432222222337899999999
Q ss_pred CCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCccc
Q 037539 426 SSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 426 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
++|++++..|..|..+++|++|+|++|++++..+..+. ++|+.|+|++|++++..|+.+ ++|+.|++++|++.|.
T Consensus 488 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICE 562 (844)
T ss_dssp CHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCS
T ss_pred CCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccc
Confidence 99999988898999999999999999999987777666 899999999999999988765 4799999999999998
Q ss_pred CCCC
Q 037539 506 IPSG 509 (622)
Q Consensus 506 ~p~~ 509 (622)
++..
T Consensus 563 c~~~ 566 (844)
T 3j0a_A 563 CELS 566 (844)
T ss_dssp SSCC
T ss_pred cccH
Confidence 8754
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-47 Score=417.06 Aligned_cols=431 Identities=22% Similarity=0.259 Sum_probs=282.0
Q ss_pred cCCcEEeCCCCCCCC--------CCCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCc
Q 037539 33 ERLQELVLGLGKFFE--------TSNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTS 103 (622)
Q Consensus 33 ~~L~~L~L~~n~i~~--------~~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~ 103 (622)
+++++|++++|.+++ +++|++|++++|.+++. +. .|.++++|++|+|++|.+++..+ ..+..+ ++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l-~~ 101 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG---AYQSLSHLSTLILTGNPIQSLAL--GAFSGL-SS 101 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTT---TTTTCTTCCEEECTTCCCCEECT--TTTTTC-TT
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcc---cccCchhCCEEeCcCCcCCccCH--hhhcCc-cc
Confidence 468888888887643 37888888888888877 55 68888888888888888887766 677777 88
Q ss_pred ccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCC-CCchhhcCCccCcEeEeecCCCCCcCchhhhhccc
Q 037539 104 IETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG-GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSF 182 (622)
Q Consensus 104 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l 182 (622)
|++|++++|+++. ++. ..++.+++|++|++++|.+++ .+|..|+++++|++|++++|.+++..+..+..+.
T Consensus 102 L~~L~L~~n~l~~--l~~-----~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~- 173 (570)
T 2z63_A 102 LQKLVAVETNLAS--LEN-----FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH- 173 (570)
T ss_dssp CCEEECTTSCCCC--STT-----CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH-
T ss_pred ccccccccccccc--CCC-----ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh-
Confidence 8888888888875 221 135788888888888888876 3688888888888888888888877777755543
Q ss_pred cccCCCc----CEEEccCCcccccCCC-CCCCCCCCEEEeeccc------------------------------------
Q 037539 183 GCVVNSL----EGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNC------------------------------------ 221 (622)
Q Consensus 183 ~~~~~~L----~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~------------------------------------ 221 (622)
+| ++|++++|.+.+..+. +... +|++|++++|.
T Consensus 174 -----~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 174 -----QMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp -----TCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred -----ccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 36 7888888888877766 5444 78888877763
Q ss_pred ----------------------CCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEE
Q 037539 222 ----------------------LNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLN 279 (622)
Q Consensus 222 ----------------------l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~ 279 (622)
+.+..+..+..+++|++|++++|.++ .+|.++... +|++|+
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~---------------~l~~~~~~~--~L~~L~ 310 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE---------------RVKDFSYNF--GWQHLE 310 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC---------------SCCBCCSCC--CCSEEE
T ss_pred hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch---------------hhhhhhccC--CccEEe
Confidence 22233344455566666666666554 334433332 566666
Q ss_pred ccCCcCcccCCCC---cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccC--CCccCCCCCccEEeeeCCcCCC
Q 037539 280 LSNNHFRGKLPDL---SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKI--PDSMGFLNNIWTLNLHNNRLTG 354 (622)
Q Consensus 280 l~~n~l~~~~~~~---~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~ 354 (622)
+++|.+. .+|.. .++.|++++|.+.+..+. ..+++|++|++++|++++.. +..+..+++|++|++++|.+.+
T Consensus 311 l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 387 (570)
T 2z63_A 311 LVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387 (570)
T ss_dssp EESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE
T ss_pred eccCccc-ccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc
Confidence 6666655 33321 566666666665544333 45666666666666665432 4445566666666666666653
Q ss_pred CCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC-cc
Q 037539 355 KLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD-GA 433 (622)
Q Consensus 355 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~ 433 (622)
..+ .+..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+. +.
T Consensus 388 ~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 388 MSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-----GLSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp EEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT-----TCTTCCEEECTTCEEGGGE
T ss_pred ccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh-----cCCcCcEEECcCCcCcccc
Confidence 332 3666666666666666664444433333566666666666666655555444 5666666666666665 34
Q ss_pred chHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 434 IPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 434 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++|.+|..
T Consensus 462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 5566666666666666666666555666666666666666666666665556666666666666666666666653
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-45 Score=398.99 Aligned_cols=464 Identities=21% Similarity=0.194 Sum_probs=380.6
Q ss_pred CcEEeCCCCCCCCC-----CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEE
Q 037539 35 LQELVLGLGKFFET-----SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLD 108 (622)
Q Consensus 35 L~~L~L~~n~i~~~-----~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~ 108 (622)
.+.++.++..++.. +++++|++++|.+++. +. .|.++++|++|++++|.+++..+ ..+.++ ++|++|+
T Consensus 9 ~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~i~~i~~--~~~~~l-~~L~~L~ 82 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRCEIQTIED--GAYQSL-SHLSTLI 82 (570)
T ss_dssp TTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTT---TTTTCSSCCEEECTTCCCCEECT--TTTTTC-TTCCEEE
T ss_pred CcEEEeCCCCccccCCCccccccEEEccCCccCccChh---HhhCCCCceEEECCCCcCCccCc--ccccCc-hhCCEEe
Confidence 45667776666554 6899999999999988 65 79999999999999999998777 678888 9999999
Q ss_pred ccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCc-CchhhhhccccccCC
Q 037539 109 LSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQ-YSQVIQNLSFGCVVN 187 (622)
Q Consensus 109 Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~-~~~~~~~l~l~~~~~ 187 (622)
+++|+++. ..| ..|+.+++|++|++++|.+++..+..++.+++|++|++++|.+++. .|..+.+ +++
T Consensus 83 L~~n~l~~-~~~------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-----l~~ 150 (570)
T 2z63_A 83 LTGNPIQS-LAL------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-----LTN 150 (570)
T ss_dssp CTTCCCCE-ECT------TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGG-----CTT
T ss_pred CcCCcCCc-cCH------hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcc-----cCC
Confidence 99999985 222 3458999999999999999976666799999999999999999874 5888544 445
Q ss_pred CcCEEEccCCcccccCCC-CCCCCCC----CEEEeecccCCccCccccCCCCCCCEEEccCCCCccccc-----------
Q 037539 188 SLEGLYLRWNDFTGPIPH-LGGFSSL----EAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISL----------- 251 (622)
Q Consensus 188 ~L~~L~L~~n~~~~~~~~-l~~l~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----------- 251 (622)
|++|++++|.+++..+. ++.+++| +.|++++|.+++..+..+... +|++|++++|.......
T Consensus 151 -L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~ 228 (570)
T 2z63_A 151 -LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLE 228 (570)
T ss_dssp -CCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCE
T ss_pred -CCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccc
Confidence 99999999999987766 8888888 899999999998888887765 89999999884321100
Q ss_pred --------------------ccc------------cCCC-CcccCCchhHHhcCCCCcEEEccCCcCcccCCC---Cccc
Q 037539 252 --------------------CIL------------TSPI-GISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPD---LSLR 295 (622)
Q Consensus 252 --------------------~~~------------~~~~-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~L~ 295 (622)
..+ +..+ .+.+.+|..+.. +++|+.|++++|.+.+..+. ..++
T Consensus 229 ~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~~l~~~~~~~~L~ 307 (570)
T 2z63_A 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIERVKDFSYNFGWQ 307 (570)
T ss_dssp EEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEECSCCBCCSCCCCS
T ss_pred eeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccchhhhhhhccCCcc
Confidence 000 0011 334445555544 46999999999998743222 2899
Q ss_pred EEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCC--CccccCCCCccEEEccC
Q 037539 296 FDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKL--PSPLRNFSQLRVLDLEK 373 (622)
Q Consensus 296 ~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~l~~l~~L~~L~L~~ 373 (622)
.|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++
T Consensus 308 ~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~ 382 (570)
T 2z63_A 308 HLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382 (570)
T ss_dssp EEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS
T ss_pred EEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCC
Confidence 9999999988 4444 4788999999999998866554 67899999999999998543 67788999999999999
Q ss_pred CcccccCchhHHhhcccccEeecCCCcCcccCC-hhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCc
Q 037539 374 NAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIP-YQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRN 452 (622)
Q Consensus 374 n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 452 (622)
|.+ ..++..+. .+++|++|++++|.+.+..+ ..+. .+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 383 n~l-~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 383 NGV-ITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFL-----SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp CSE-EEEEEEEE-TCTTCCEEECTTSEEESCTTSCTTT-----TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred Ccc-cccccccc-ccCCCCEEEccCCccccccchhhhh-----cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence 998 44555544 79999999999999987665 3343 7999999999999999889999999999999999999
Q ss_pred ccc-CCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcCCCCCC
Q 037539 453 HLT-GPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 453 ~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 530 (622)
.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|.. ..+..++.+.+.+|++.|+|+
T Consensus 456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 997 568899999999999999999999988999999999999999999999776653 457788889999999999876
Q ss_pred C
Q 037539 531 L 531 (622)
Q Consensus 531 ~ 531 (622)
.
T Consensus 536 ~ 536 (570)
T 2z63_A 536 R 536 (570)
T ss_dssp T
T ss_pred c
Confidence 4
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-46 Score=414.78 Aligned_cols=364 Identities=19% Similarity=0.234 Sum_probs=262.8
Q ss_pred CCCCCCCCCCcchhccccCcccEEEccCCCCCCCC-----------------CchhhhcccccC--CCccccEEEeeccc
Q 037539 84 SCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSS-----------------VYPWLLNLKAFQ--HMVSLKSLYLSDSE 144 (622)
Q Consensus 84 ~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~-----------------~~~~~~~~~~l~--~l~~L~~L~L~~n~ 144 (622)
+|.+++ +| ..+.++ ++|++|+|++|.+++ . +|..+ + ++++|++|++++|.
T Consensus 192 ~n~l~~-ip--~~l~~l-~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~ip~~l------~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 192 SNNITF-VS--KAVMRL-TKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDL------KWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp SCEEEE-EC--GGGGGC-TTCCEEEEESCCCCG-GGBSSSCSCTTSHHHHHHTTSCC------CGGGCTTCCEEEEECCT
T ss_pred cCCCcc-CC--HHHhcc-cCCCEEECcCCcccc-ccccccccccccchhcccCchhh------hhcccCCCCEEEecCCc
Confidence 455666 56 567777 778888888887765 2 45443 4 67778888888887
Q ss_pred CCCCCchhhcCCccCcEeEeecCC-CCC-cCchhhhhc-cccccCCCcCEEEccCCcccccCC--CCCCCCCCCEEEeec
Q 037539 145 LEGGIPKFFGNMCSLKKLRLSYNK-LSG-QYSQVIQNL-SFGCVVNSLEGLYLRWNDFTGPIP--HLGGFSSLEAWSLDV 219 (622)
Q Consensus 145 l~~~~~~~l~~l~~L~~L~L~~n~-i~~-~~~~~~~~l-~l~~~~~~L~~L~L~~n~~~~~~~--~l~~l~~L~~L~L~~ 219 (622)
+.+.+|..|+++++|++|++++|+ +++ ..|..+..+ .+..+++ |++|++++|.++.... .++.+++|++|++++
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~-L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK-IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGT-CCEEECCSSCCSSCCCHHHHTTCTTCCEEECCS
T ss_pred CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCC-CCEEECCCCcCCccCchhhhccCCCCCEEeCcC
Confidence 777777777778888888888877 776 667665543 0111233 7777777777773333 277777777777777
Q ss_pred ccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCC-CcEEEccCCcCcccCCCCcccEEe
Q 037539 220 NCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNK-LSYLNLSNNHFRGKLPDLSLRFDD 298 (622)
Q Consensus 220 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~L~~L~ 298 (622)
|.+++.+| .+..+++|++|++++|+++ .+|.++.... + |++|++++|.+.
T Consensus 340 N~l~g~ip-~~~~l~~L~~L~L~~N~l~---------------~lp~~l~~l~-~~L~~L~Ls~N~l~------------ 390 (636)
T 4eco_A 340 NQLEGKLP-AFGSEIKLASLNLAYNQIT---------------EIPANFCGFT-EQVENLSFAHNKLK------------ 390 (636)
T ss_dssp CCCEEECC-CCEEEEEESEEECCSSEEE---------------ECCTTSEEEC-TTCCEEECCSSCCS------------
T ss_pred CcCccchh-hhCCCCCCCEEECCCCccc---------------cccHhhhhhc-ccCcEEEccCCcCc------------
Confidence 77776666 7777777777777777765 4455544443 4 666666666655
Q ss_pred CCCCcCccccCccccCCC--CCCEEEccCCcccccCCCccC-------CCCCccEEeeeCCcCCCCCCccccCCCCccEE
Q 037539 299 LSSNLLSGGLPDCWLHFD--RLFILNLANNRLSGKIPDSMG-------FLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVL 369 (622)
Q Consensus 299 ls~n~l~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~-------~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 369 (622)
.+|..+..++ +|++|++++|++++..|..+. .+++|++|++++|.++...+..+..+++|++|
T Consensus 391 --------~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L 462 (636)
T 4eco_A 391 --------YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462 (636)
T ss_dssp --------SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEE
T ss_pred --------ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEE
Confidence 4455555443 788888888888887777777 67788888888888885444556678888888
Q ss_pred EccCCcccccCchhHHhhcc-------cccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhccc
Q 037539 370 DLEKNAIFGEIPTWIGESLQ-------NLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLV 442 (622)
Q Consensus 370 ~L~~n~i~~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 442 (622)
++++|.+ ..+|...+.... +|++|++++|+++ .+|..+. ...+++|+.|+|++|++++ +|..+.+++
T Consensus 463 ~Ls~N~l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~---~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~ 536 (636)
T 4eco_A 463 NLMGNML-TEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR---ATTLPYLVGIDLSYNSFSK-FPTQPLNSS 536 (636)
T ss_dssp ECCSSCC-SBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS---TTTCTTCCEEECCSSCCSS-CCCGGGGCS
T ss_pred ECCCCCC-CCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhh---hccCCCcCEEECCCCCCCC-cChhhhcCC
Confidence 8888888 477776653332 8888888888888 4554331 0157888888888888886 788888888
Q ss_pred ccceeec------CCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCccc
Q 037539 443 GLIALNL------SRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 443 ~L~~L~L------~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
+|++|+| ++|++.+.+|..+..+++|++|+|++|++ +.+|..+. ++|+.|++++|++.+.
T Consensus 537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 8898888 45777888888899999999999999999 46777655 7899999999988754
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.4e-45 Score=403.94 Aligned_cols=441 Identities=16% Similarity=0.207 Sum_probs=360.1
Q ss_pred CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCC------CC------CCCCcchhccccCcccEEEccCCCCC
Q 037539 49 SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCAL------PP------VNPSFIWHFNLSTSIETLDLSDNNLP 115 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l------~~------~~~~~~~l~~l~~~L~~L~Ls~n~l~ 115 (622)
.+++.|+|+++.+++. |. .++++++|++|+|++|.+ .+ ..| ... + ..|+ ++++++.+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~---~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~--~~~--~-~~l~-l~l~~~~l~ 151 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPD---AIGQLTELEVLALGSHGEKVNERLFGPKGISANMS--DEQ--K-QKMR-MHYQKTFVD 151 (636)
T ss_dssp CCEEEEECTTSCCEEEECG---GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCC--HHH--H-HHHH-THHHHHHTC
T ss_pred CCEEEEEecCcccCCcCCh---HHhcCccceEEECcCCccccCCccccccccccCch--HHH--H-HHHH-hhHHHhhhc
Confidence 5799999999999888 76 899999999999999965 12 222 122 3 5677 788877776
Q ss_pred CCCCchhhhccc-----------c--cCCCccccEEEee--cccCCCCCchhhcCCccCcEeEeecCCCCCc--------
Q 037539 116 SSSVYPWLLNLK-----------A--FQHMVSLKSLYLS--DSELEGGIPKFFGNMCSLKKLRLSYNKLSGQ-------- 172 (622)
Q Consensus 116 ~~~~~~~~~~~~-----------~--l~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~-------- 172 (622)
+ ..|..+...- . ......++.+.+. .|.+++ +|..|+++++|++|++++|.+++.
T Consensus 152 ~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 229 (636)
T 4eco_A 152 Y-DPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229 (636)
T ss_dssp C-CGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred c-CchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence 5 5554432100 0 0111222222222 578887 899999999999999999999985
Q ss_pred ---------CchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeeccc-CCc-cCccccCCC------C
Q 037539 173 ---------YSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNC-LNG-TIDKSLSQL------S 234 (622)
Q Consensus 173 ---------~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~ 234 (622)
+|..+. +.++++ |++|++++|.+.+.+|. ++++++|++|++++|. +++ .+|..+..+ +
T Consensus 230 ~~~~~~~~~ip~~l~---~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~ 305 (636)
T 4eco_A 230 ENSEYAQQYKTEDLK---WDNLKD-LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305 (636)
T ss_dssp TTSHHHHHHTTSCCC---GGGCTT-CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG
T ss_pred cccchhcccCchhhh---hcccCC-CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC
Confidence 777743 115555 99999999999998888 9999999999999998 988 788888776 9
Q ss_pred CCCEEEccCCCCcccccccccCCCCcccCCch--hHHhcCCCCcEEEccCCcCcccCCCC----cccEEeCCCCcCcccc
Q 037539 235 KLESLSLDGNSLRAISLCILTSPIGISDSIPD--WFWDLSNKLSYLNLSNNHFRGKLPDL----SLRFDDLSSNLLSGGL 308 (622)
Q Consensus 235 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~----~L~~L~ls~n~l~~~~ 308 (622)
+|++|++++|+++ .+|. .+.. +++|+.|++++|++.|.+|.+ +|+.|++++|.+. .+
T Consensus 306 ~L~~L~L~~n~l~---------------~ip~~~~l~~-l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~l 368 (636)
T 4eco_A 306 KIQIIYIGYNNLK---------------TFPVETSLQK-MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EI 368 (636)
T ss_dssp TCCEEECCSSCCS---------------SCCCHHHHTT-CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-EC
T ss_pred CCCEEECCCCcCC---------------ccCchhhhcc-CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cc
Confidence 9999999999987 5677 5544 569999999999999888865 8999999999999 78
Q ss_pred CccccCCCC-CCEEEccCCcccccCCCccCCCC--CccEEeeeCCcCCCCCCcccc-------CCCCccEEEccCCcccc
Q 037539 309 PDCWLHFDR-LFILNLANNRLSGKIPDSMGFLN--NIWTLNLHNNRLTGKLPSPLR-------NFSQLRVLDLEKNAIFG 378 (622)
Q Consensus 309 ~~~~~~~~~-L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~l~-------~l~~L~~L~L~~n~i~~ 378 (622)
|..+..+++ |++|++++|+++ .+|..+..+. +|++|++++|.+.+..|..+. .+++|++|++++|.+ .
T Consensus 369 p~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~ 446 (636)
T 4eco_A 369 PANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-S 446 (636)
T ss_dssp CTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-C
T ss_pred cHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-C
Confidence 888999999 999999999999 7788777655 899999999999998888888 888999999999999 5
Q ss_pred cCchhHHhhcccccEeecCCCcCcccCChhhhHh--HhhhcCCccEEECCCCcCCccchHHhh--cccccceeecCCccc
Q 037539 379 EIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENE--YKSTLGLVRCLDLSSNKLDGAIPEEIM--DLVGLIALNLSRNHL 454 (622)
Q Consensus 379 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l 454 (622)
.+|..++..+++|++|++++|+++...+..+... ....+++|+.|+|++|+++ .+|..+. .+++|++|+|++|++
T Consensus 447 ~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSF 525 (636)
T ss_dssp SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCC
T ss_pred cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCC
Confidence 8998888779999999999999994333333210 0112339999999999999 7888886 999999999999999
Q ss_pred cCCCccccCCCCCCCEEeC------CCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCCC
Q 037539 455 TGPITPKIGELTSLDFLDL------SRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELC 527 (622)
Q Consensus 455 ~~~~~~~l~~l~~L~~L~L------s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc 527 (622)
++ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|++++|++ +.+|.. ....++.+.+.+|+..|
T Consensus 526 ~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 526 SK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp SS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCE
T ss_pred CC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcc
Confidence 97 8999999999999999 56888889999999999999999999999 688876 44788889999998876
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-44 Score=393.73 Aligned_cols=449 Identities=21% Similarity=0.233 Sum_probs=263.8
Q ss_pred cCCcEEeCCCCCCCCC--------CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCc
Q 037539 33 ERLQELVLGLGKFFET--------SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTS 103 (622)
Q Consensus 33 ~~L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~ 103 (622)
++|++|++++|.+++. ++|++|++++|.+++. +. .|.++++|++|++++|.+++..+ ..+..+ ++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l-~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD---AFYSLGSLEHLDLSDNHLSSLSS--SWFGPL-SS 99 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTSCCCSCCH--HHHTTC-TT
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh---hccccccCCEEECCCCccCccCH--HHhccC-CC
Confidence 6788999998887433 8889999999988887 56 78888899999999998888766 567788 88
Q ss_pred ccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeeccc-CCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccc
Q 037539 104 IETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSE-LEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSF 182 (622)
Q Consensus 104 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l 182 (622)
|++|++++|.++++..|.. ++.+++|++|++++|. +....+..|.++++|++|++++|.+++..|..+..
T Consensus 100 L~~L~Ls~n~l~~~~~~~~------~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~--- 170 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSL------FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS--- 170 (549)
T ss_dssp CCEEECTTCCCSSSCSSCS------CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT---
T ss_pred CcEEECCCCcccccchhhh------hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc---
Confidence 9999999998875334433 4788889999999888 44333467888889999999999888888877444
Q ss_pred cccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccC--c-cccCCCCCCCEEEccCCCCcccccccccCCC
Q 037539 183 GCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTI--D-KSLSQLSKLESLSLDGNSLRAISLCILTSPI 258 (622)
Q Consensus 183 ~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~--~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 258 (622)
+++ |++|++++|.+...... +..+++|++|++++|.+++.. + .....+++|+.|++++|.+++..
T Consensus 171 --l~~-L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-------- 239 (549)
T 2z81_A 171 --IRD-IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES-------- 239 (549)
T ss_dssp --CSE-EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH--------
T ss_pred --ccc-CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH--------
Confidence 444 89999988887543333 456888999999998887642 1 22345778899999888776432
Q ss_pred CcccCCchhHH---hcCCCCcEEEccCCcCcccC----------CCC-cccEEeCCCCcCccc-----cCccccCCCCCC
Q 037539 259 GISDSIPDWFW---DLSNKLSYLNLSNNHFRGKL----------PDL-SLRFDDLSSNLLSGG-----LPDCWLHFDRLF 319 (622)
Q Consensus 259 ~l~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~----------~~~-~L~~L~ls~n~l~~~-----~~~~~~~~~~L~ 319 (622)
+..+. ...++|+.+++++|.+.+.. ... .++.+++.++.+... .+..+...++|+
T Consensus 240 ------~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~ 313 (549)
T 2z81_A 240 ------FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313 (549)
T ss_dssp ------HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCC
T ss_pred ------HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccce
Confidence 22221 22356777777777665421 111 444555444443321 111122234455
Q ss_pred EEEccCCcccccCCCcc-CCCCCccEEeeeCCcCCCCCC---ccccCCCCccEEEccCCcccccCch--hHHhhcccccE
Q 037539 320 ILNLANNRLSGKIPDSM-GFLNNIWTLNLHNNRLTGKLP---SPLRNFSQLRVLDLEKNAIFGEIPT--WIGESLQNLIV 393 (622)
Q Consensus 320 ~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~---~~l~~l~~L~~L~L~~n~i~~~~~~--~~~~~l~~L~~ 393 (622)
+|++++|+++ .+|..+ ..+++|++|++++|.+.+..| ..++.+++|++|++++|.+ ..++. ..+..+++|++
T Consensus 314 ~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~l~~L~~ 391 (549)
T 2z81_A 314 RITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLKNLTS 391 (549)
T ss_dssp EEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC-CCHHHHHHHGGGCTTCCE
T ss_pred EEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc-cccccchhhhhcCCCCCE
Confidence 5555555554 333322 345555555555555543321 1244455555555555555 22221 12224555555
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeC
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDL 473 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 473 (622)
|++++|+++ .+|..+. .+++|++|++++|+++ .+|..+ .++|++|++++|++++.+ ..+++|++|+|
T Consensus 392 L~Ls~N~l~-~lp~~~~-----~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~L 458 (549)
T 2z81_A 392 LDISRNTFH-PMPDSCQ-----WPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYI 458 (549)
T ss_dssp EECTTCCCC-CCCSCCC-----CCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEEC
T ss_pred EECCCCCCc-cCChhhc-----ccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEEC
Confidence 555555554 2332222 3455555555555554 222211 134555555555554321 34455555555
Q ss_pred CCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcCCCCCC
Q 037539 474 SRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 474 s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 530 (622)
++|+++ .+|. ...+++|++|++++|++++..|.. ..+..++.+.+.+|++.|+|+
T Consensus 459 s~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 555554 3333 234555555555555555443331 234444445555555555443
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-44 Score=388.79 Aligned_cols=445 Identities=18% Similarity=0.201 Sum_probs=345.3
Q ss_pred CCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCCC--------CCccEEEcCCcccCCC-CcchHhhcCCCCC
Q 037539 7 PHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFET--------SNINTFFLNTVSVTKS-SDWFQVVAKLHSL 77 (622)
Q Consensus 7 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L 77 (622)
++++++++++ +++|..+. ++|++|++++|.+++. ++|++|++++|.+++. +. .|.++++|
T Consensus 3 ~~l~ls~n~l-~~ip~~~~-------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L 71 (520)
T 2z7x_B 3 FLVDRSKNGL-IHVPKDLS-------QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS---VFKFNQEL 71 (520)
T ss_dssp CEEECTTSCC-SSCCCSCC-------TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG---GGTTCTTC
T ss_pred ceEecCCCCc-cccccccc-------ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH---HhhcccCC
Confidence 3566777665 45553322 7889999999988665 8899999999998888 66 78899999
Q ss_pred CEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCc
Q 037539 78 KSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMC 157 (622)
Q Consensus 78 ~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 157 (622)
++|+|++|.++.... . .+ ++|++|++++|+++++.+|..+ +.+++|++|++++|.+++ ..+..++
T Consensus 72 ~~L~Ls~N~l~~lp~---~--~l-~~L~~L~L~~N~l~~~~~p~~~------~~l~~L~~L~L~~n~l~~---~~~~~l~ 136 (520)
T 2z7x_B 72 EYLDLSHNKLVKISC---H--PT-VNLKHLDLSFNAFDALPICKEF------GNMSQLKFLGLSTTHLEK---SSVLPIA 136 (520)
T ss_dssp CEEECCSSCCCEEEC---C--CC-CCCSEEECCSSCCSSCCCCGGG------GGCTTCCEEEEEESSCCG---GGGGGGT
T ss_pred CEEecCCCceeecCc---c--cc-CCccEEeccCCccccccchhhh------ccCCcceEEEecCcccch---hhccccc
Confidence 999999998885433 2 66 8999999999998865566655 678899999999998875 4567777
Q ss_pred cC--cEeEeecCCC--CCcCchhhhhccccccCCCcCEEEccCCcccccCCC--CCCCCCCCEEEeeccc-------CCc
Q 037539 158 SL--KKLRLSYNKL--SGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH--LGGFSSLEAWSLDVNC-------LNG 224 (622)
Q Consensus 158 ~L--~~L~L~~n~i--~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~--l~~l~~L~~L~L~~n~-------l~~ 224 (622)
+| +.|++++|.+ .+..|..+..+. .....+++++|.+.+..+. +..+++|+.|++++|. +.+
T Consensus 137 ~L~L~~L~l~~n~l~~~~~~~~~l~~l~-----~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 211 (520)
T 2z7x_B 137 HLNISKVLLVLGETYGEKEDPEGLQDFN-----TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211 (520)
T ss_dssp TSCEEEEEEEECTTTTSSCCTTTTTTCC-----EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred cceeeEEEeecccccccccccccccccc-----cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence 77 9999999988 777777754432 1255678888888776665 7889999999999987 665
Q ss_pred cCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC----------cc
Q 037539 225 TIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL----------SL 294 (622)
Q Consensus 225 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----------~L 294 (622)
.++ .+..+++|++|++++|.+++.... .++...+ .++|++|++++|++.+.+|.. .+
T Consensus 212 ~~~-~l~~l~~L~~L~l~~~~l~~~~~~----------~~~~~~~--~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L 278 (520)
T 2z7x_B 212 ILA-KLQTNPKLSNLTLNNIETTWNSFI----------RILQLVW--HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278 (520)
T ss_dssp HHH-GGGGCTTCCEEEEEEEEEEHHHHH----------HHHHHHH--TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEE
T ss_pred chh-hhccccchhhccccccccCHHHHH----------HHHHHhh--hCcccEEEeecccccCccccchhhcccccCcee
Confidence 555 788899999999999887642100 1112221 358999999999988766641 68
Q ss_pred cEEeCCCCcCccccC-ccccCC---CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEE
Q 037539 295 RFDDLSSNLLSGGLP-DCWLHF---DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLD 370 (622)
Q Consensus 295 ~~L~ls~n~l~~~~~-~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 370 (622)
+.++++.|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 279 ~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 354 (520)
T 2z7x_B 279 SIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354 (520)
T ss_dssp EEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEE
T ss_pred Eeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEE
Confidence 8888888888 344 344333 67999999999887432 126789999999999999988888999999999999
Q ss_pred ccCCcccc--cCchhHHhhcccccEeecCCCcCcccCChh-hhHhHhhhcCCccEEECCCCcCCccchHHhhccccccee
Q 037539 371 LEKNAIFG--EIPTWIGESLQNLIVLSLKSNKFHGNIPYQ-FENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIAL 447 (622)
Q Consensus 371 L~~n~i~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 447 (622)
+++|.+.+ .+|..+. .+++|++|++++|++.+.+|.. +. .+++|++|++++|++++..|..+. ++|++|
T Consensus 355 L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L 426 (520)
T 2z7x_B 355 LQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCS-----WTKSLLSLNMSSNILTDTIFRCLP--PRIKVL 426 (520)
T ss_dssp CCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCC-----CCTTCCEEECCSSCCCGGGGGSCC--TTCCEE
T ss_pred ccCCccCccccchHHHh-hCCCCCEEECCCCcCCcccccchhc-----cCccCCEEECcCCCCCcchhhhhc--ccCCEE
Confidence 99999844 3444444 7899999999999998755543 33 688999999999999877776554 789999
Q ss_pred ecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 448 NLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 448 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|+++|.++.
T Consensus 427 ~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 427 DLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp ECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 99999998 6777777999999999999999954433488999999999999999988664
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.9e-44 Score=400.41 Aligned_cols=363 Identities=18% Similarity=0.206 Sum_probs=247.1
Q ss_pred CCCCCCCCCcchhccccCcccEEEccCCCCCCC----------------CCchhhhcccccCCCccccEEEeecccCCCC
Q 037539 85 CALPPVNPSFIWHFNLSTSIETLDLSDNNLPSS----------------SVYPWLLNLKAFQHMVSLKSLYLSDSELEGG 148 (622)
Q Consensus 85 n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~----------------~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 148 (622)
|.+++ +| ..+.++ ++|++|+|++|++++. .+|..+ .|.++++|++|+|++|.+.+.
T Consensus 435 N~L~~-IP--~~l~~L-~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l----~f~~L~~L~~L~Ls~N~l~~~ 506 (876)
T 4ecn_A 435 NRITF-IS--KAIQRL-TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL----SWSNLKDLTDVELYNCPNMTQ 506 (876)
T ss_dssp CEEEE-EC--GGGGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC----CGGGCTTCCEEEEESCTTCCS
T ss_pred Ccccc-hh--HHHhcC-CCCCEEECcCCcCCCCcccccccccccccccccCChhh----hhccCCCCCEEECcCCCCCcc
Confidence 55655 56 567777 7888888888877641 044433 122777888888888887777
Q ss_pred CchhhcCCccCcEeEeecCC-CCC-cCchhhhhcc--ccccCCCcCEEEccCCcccccCC--CCCCCCCCCEEEeecccC
Q 037539 149 IPKFFGNMCSLKKLRLSYNK-LSG-QYSQVIQNLS--FGCVVNSLEGLYLRWNDFTGPIP--HLGGFSSLEAWSLDVNCL 222 (622)
Q Consensus 149 ~~~~l~~l~~L~~L~L~~n~-i~~-~~~~~~~~l~--l~~~~~~L~~L~L~~n~~~~~~~--~l~~l~~L~~L~L~~n~l 222 (622)
+|..|+++++|+.|++++|+ +++ ..|..+..+. +..+++ |++|++++|.+..... .++.+++|++|++++|.+
T Consensus 507 iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~-L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l 585 (876)
T 4ecn_A 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK-IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585 (876)
T ss_dssp CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT-CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC
T ss_pred ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCC-ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc
Confidence 88888888888888888887 776 6676654431 233445 8888888888773333 277788888888888888
Q ss_pred CccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC-------ccc
Q 037539 223 NGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL-------SLR 295 (622)
Q Consensus 223 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-------~L~ 295 (622)
+ .+| .|..+++|++|++++|.++ .+|..+.....+|+.|++++|++. .+|.. .|+
T Consensus 586 ~-~lp-~~~~L~~L~~L~Ls~N~l~---------------~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~ 647 (876)
T 4ecn_A 586 R-HLE-AFGTNVKLTDLKLDYNQIE---------------EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMG 647 (876)
T ss_dssp C-BCC-CCCTTSEESEEECCSSCCS---------------CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEE
T ss_pred c-cch-hhcCCCcceEEECcCCccc---------------cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCC
Confidence 7 566 7778888888888888776 456555554322888888888877 44432 378
Q ss_pred EEeCCCCcCccccCccc---c--CCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCcc-ccC-------
Q 037539 296 FDDLSSNLLSGGLPDCW---L--HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSP-LRN------- 362 (622)
Q Consensus 296 ~L~ls~n~l~~~~~~~~---~--~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-l~~------- 362 (622)
.|++++|.+.+.+|... . .+++|+.|++++|+++...+..+..+++|+.|++++|.+. .+|.. +..
T Consensus 648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTT
T ss_pred EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccc
Confidence 88888888876554322 2 3458999999999998433334457889999999999988 44443 332
Q ss_pred CCCccEEEccCCcccccCchhHH-hhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcc
Q 037539 363 FSQLRVLDLEKNAIFGEIPTWIG-ESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDL 441 (622)
Q Consensus 363 l~~L~~L~L~~n~i~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 441 (622)
+++|++|+|++|.+ ..+|..++ ..+++|+.|+|++|++++ +|..+. .+++|+.|+|++|+
T Consensus 727 l~~L~~L~Ls~N~L-~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~-----~L~~L~~L~Ls~N~------------ 787 (876)
T 4ecn_A 727 TYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL-----NSSQLKAFGIRHQR------------ 787 (876)
T ss_dssp GGGCCEEECCSSCC-CCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG-----GCTTCCEEECCCCB------------
T ss_pred cCCccEEECCCCCC-ccchHHhhhccCCCcCEEEeCCCCCCc-cchhhh-----cCCCCCEEECCCCC------------
Confidence 23899999999998 47887765 358889999999998886 555554 68888888887754
Q ss_pred cccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCc
Q 037539 442 VGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 442 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
++++|.+.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.||+++|++.
T Consensus 788 ------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 788 ------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp ------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred ------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence 3444555555555555555555555555555 34444433 35555555555554
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-43 Score=382.37 Aligned_cols=447 Identities=22% Similarity=0.193 Sum_probs=360.0
Q ss_pred cEEeCCCCCCCCC-----CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEc
Q 037539 36 QELVLGLGKFFET-----SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDL 109 (622)
Q Consensus 36 ~~L~L~~n~i~~~-----~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~L 109 (622)
++||+++|.++.. ++|++|++++|.+++. +. .+.++++|++|+|++|.+++..| ..+..+ ++|++|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l-~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTS---DILSLSKLRILIISHNRIQYLDI--SVFKFN-QELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHH---HHTTCTTCCEEECCSSCCCEEEG--GGGTTC-TTCCEEEC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChh---hccccccccEEecCCCccCCcCh--HHhhcc-cCCCEEec
Confidence 5799999999776 6899999999999988 45 89999999999999999998877 788888 99999999
Q ss_pred cCCCCCCCCCchhhhcccccCCCccccEEEeecccCCC-CCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCC
Q 037539 110 SDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG-GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNS 188 (622)
Q Consensus 110 s~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~ 188 (622)
++|+++. +|.. .+++|++|++++|.+++ ..|..|+++++|++|++++|.+++. . +..+++
T Consensus 77 s~N~l~~--lp~~--------~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~-----~~~l~~- 137 (520)
T 2z7x_B 77 SHNKLVK--ISCH--------PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---S-----VLPIAH- 137 (520)
T ss_dssp CSSCCCE--EECC--------CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---G-----GGGGTT-
T ss_pred CCCceee--cCcc--------ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---h-----cccccc-
Confidence 9999974 3331 68999999999999997 4789999999999999999999863 3 333333
Q ss_pred c--CEEEccCCcc--cccCCC-CCCCC-CCCEEEeecccCCccCc-cccCCCCCCCEEEccCCCCcccccccccCCCCcc
Q 037539 189 L--EGLYLRWNDF--TGPIPH-LGGFS-SLEAWSLDVNCLNGTID-KSLSQLSKLESLSLDGNSLRAISLCILTSPIGIS 261 (622)
Q Consensus 189 L--~~L~L~~n~~--~~~~~~-l~~l~-~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 261 (622)
| ++|++++|.+ .+..|. +..+. ....+++++|.+.+.++ ..+..+++|+.|++++|..... ...+.
T Consensus 138 L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------~~~~~ 210 (520)
T 2z7x_B 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK-------CSYFL 210 (520)
T ss_dssp SCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT-------THHHH
T ss_pred ceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc-------cceee
Confidence 6 9999999999 666665 66655 34456778888765444 4677899999999999861100 00011
Q ss_pred cCCchhHHhcCCCCcEEEccCCcCcccCCC--------CcccEEeCCCCcCccccCccc-----cCCCCCCEEEccCCcc
Q 037539 262 DSIPDWFWDLSNKLSYLNLSNNHFRGKLPD--------LSLRFDDLSSNLLSGGLPDCW-----LHFDRLFILNLANNRL 328 (622)
Q Consensus 262 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--------~~L~~L~ls~n~l~~~~~~~~-----~~~~~L~~L~L~~n~i 328 (622)
+.+| .+ ..+++|+.|++++|.+.+..+. ..++.|++++|.+.+.+|..+ ..+++|+.+++++|.+
T Consensus 211 ~~~~-~l-~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~ 288 (520)
T 2z7x_B 211 SILA-KL-QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288 (520)
T ss_dssp HHHH-GG-GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred cchh-hh-ccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence 2333 33 3356999999999987753221 279999999999998889888 8999999999999998
Q ss_pred cccCC-CccCCC---CCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcc-
Q 037539 329 SGKIP-DSMGFL---NNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHG- 403 (622)
Q Consensus 329 ~~~~~-~~~~~l---~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~- 403 (622)
.+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|.+.+.+|..+. .+++|++|++++|++++
T Consensus 289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l 363 (520)
T 2z7x_B 289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKEL 363 (520)
T ss_dssp --CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBH
T ss_pred --ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCcc
Confidence 344 334333 67999999999987432 236889999999999999777787765 79999999999999986
Q ss_pred -cCChhhhHhHhhhcCCccEEECCCCcCCccchH-HhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCcc
Q 037539 404 -NIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPE-EIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS 481 (622)
Q Consensus 404 -~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 481 (622)
..|..+. .+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..|..+. ++|+.|++++|+++ .
T Consensus 364 ~~~~~~~~-----~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ 435 (520)
T 2z7x_B 364 SKIAEMTT-----QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-S 435 (520)
T ss_dssp HHHHHHHT-----TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-C
T ss_pred ccchHHHh-----hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-c
Confidence 3333343 799999999999999975665 488899999999999999887777664 79999999999999 7
Q ss_pred CCccccCCCCCCEEECcCCcCcccCCCC--CcCCccCcccccCCcCCCCCC
Q 037539 482 IPCSLSQLSGLGVLDLSYNNLSGKIPSG--TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 482 ~~~~l~~l~~L~~L~ls~N~l~~~~p~~--~~~~~l~~~~~~~n~~lc~~~ 530 (622)
+|..+..+++|++|++++|+++ .+|.. ..+..++.+.+.+|++.|+|+
T Consensus 436 ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 436 IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 7887889999999999999999 56654 456778888999999999875
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.4e-43 Score=391.96 Aligned_cols=414 Identities=17% Similarity=0.207 Sum_probs=328.0
Q ss_pred CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEc-cCCCCCCCCCCcchh-----------------------------
Q 037539 49 SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVL-FSCALPPVNPSFIWH----------------------------- 97 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~L-s~n~l~~~~~~~~~l----------------------------- 97 (622)
.+++.|+|+++.+.+. |. .++++++|++|+| ++|.+.+..+ ...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~---~l~~L~~L~~LdLss~N~lsG~~~--~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~ 397 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPD---AIGQLTELKVLSFGTHSETVSGRL--FGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397 (876)
T ss_dssp SCEEEEECTTTCCEEEECG---GGGGCTTCCEEESCCTTHHHHTTC--BTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGG
T ss_pred CCEEEEECccCCCCCcCch---HHhccccceEeeeccccccccccc--ccccccccccchhHHHHHHHhhhhhhhccCcc
Confidence 5799999999999988 77 8999999999999 7886655422 110
Q ss_pred ----------------------ccccCcccEEEccC--CCCCCCCCchhhhcccccCCCccccEEEeecccCCC------
Q 037539 98 ----------------------FNLSTSIETLDLSD--NNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG------ 147 (622)
Q Consensus 98 ----------------------~~l~~~L~~L~Ls~--n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~------ 147 (622)
... ..++.+.+.. |++++ +|.. ++++++|++|+|++|.+++
T Consensus 398 ~~~s~l~~~~l~~~~~~~~i~~~~~-l~l~~l~l~~~~N~L~~--IP~~------l~~L~~L~~L~Ls~N~Lsg~~i~~~ 468 (876)
T 4ecn_A 398 LNLSDLLQDAINRNPEMKPIKKDSR-ISLKDTQIGNLTNRITF--ISKA------IQRLTKLQIIYFANSPFTYDNIAVD 468 (876)
T ss_dssp GGSCHHHHHHHHTCTTSCCCCCCCC-CCCCTTTTTCCSCEEEE--ECGG------GGGCTTCCEEEEESCCCCGGGBSSS
T ss_pred hhhhHHHHHHhhhCccccccccccc-cchhhceeccccCcccc--hhHH------HhcCCCCCEEECcCCcCCCCccccc
Confidence 000 1122222222 44442 5554 4789999999999999997
Q ss_pred -----------CCchhhc--CCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCc-ccc-cCCC-CC----
Q 037539 148 -----------GIPKFFG--NMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWND-FTG-PIPH-LG---- 207 (622)
Q Consensus 148 -----------~~~~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~-~~~-~~~~-l~---- 207 (622)
.+|+.++ ++++|++|++++|.+.+..|..+.++ ++ |++|++++|+ +++ .+|. ++
T Consensus 469 ~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L-----~~-L~~L~Ls~N~~lsg~~iP~~i~~L~~ 542 (876)
T 4ecn_A 469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-----PE-LQSLNIACNRGISAAQLKADWTRLAD 542 (876)
T ss_dssp CSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC-----SS-CCEEECTTCTTSCHHHHHHHHHHHHH
T ss_pred ccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC-----CC-CCEEECcCCCCcccccchHHHHhhhh
Confidence 3888877 99999999999999999999885544 44 9999999998 887 5554 44
Q ss_pred ---CCCCCCEEEeecccCCccCcc--ccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccC
Q 037539 208 ---GFSSLEAWSLDVNCLNGTIDK--SLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSN 282 (622)
Q Consensus 208 ---~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 282 (622)
.+++|++|++++|.++ .+|. .+..+++|++|++++|.++ .+| .+ ..+++|+.|++++
T Consensus 543 ~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~---------------~lp-~~-~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 543 DEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR---------------HLE-AF-GTNVKLTDLKLDY 604 (876)
T ss_dssp CTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC---------------BCC-CC-CTTSEESEEECCS
T ss_pred cccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc---------------cch-hh-cCCCcceEEECcC
Confidence 4559999999999999 7887 8999999999999999987 445 22 3345777777777
Q ss_pred CcCcccCCCCcccEEeCCCCcCccccCccccCCCC-CCEEEccCCcccccCCCccCCCCC--ccEEeeeCCcCCCCCCcc
Q 037539 283 NHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDR-LFILNLANNRLSGKIPDSMGFLNN--IWTLNLHNNRLTGKLPSP 359 (622)
Q Consensus 283 n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~-L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~Ls~n~i~~~~~~~ 359 (622)
|++. .+|..+..+++ |+.|++++|+++ .+|..+..++. |+.|++++|.+.+.+|..
T Consensus 605 N~l~--------------------~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 605 NQIE--------------------EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp SCCS--------------------CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred Cccc--------------------cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccc
Confidence 7665 56666788888 999999999998 67777776654 999999999998765532
Q ss_pred c---c--CCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhH---hhhcCCccEEECCCCcCC
Q 037539 360 L---R--NFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEY---KSTLGLVRCLDLSSNKLD 431 (622)
Q Consensus 360 l---~--~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~---~~~l~~L~~L~L~~n~l~ 431 (622)
. . .+++|++|++++|.+ ..+|..++..+++|+.|++++|++. .+|....... ...+++|+.|+|++|+++
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L-~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEI-QKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCC-CSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred hhhhccccCCCcCEEEccCCcC-CccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc
Confidence 2 2 345899999999999 5889888877899999999999998 4443322110 113448999999999999
Q ss_pred ccchHHhh--cccccceeecCCccccCCCccccCCCCCCCEEeCCC------CccCccCCccccCCCCCCEEECcCCcCc
Q 037539 432 GAIPEEIM--DLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR------NLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 432 ~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~------n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
.+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|++++|++
T Consensus 742 -~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L- 818 (876)
T 4ecn_A 742 -SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI- 818 (876)
T ss_dssp -CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred -cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-
Confidence 7788887 99999999999999996 788899999999999976 888889999999999999999999999
Q ss_pred ccCCCCCcCCccCcccccCCcCCC
Q 037539 504 GKIPSGTQLQSFNASVYAGNLELC 527 (622)
Q Consensus 504 ~~~p~~~~~~~l~~~~~~~n~~lc 527 (622)
+.+|.. ....++.+.+++|+...
T Consensus 819 ~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 819 RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred CccCHh-hcCCCCEEECCCCCCCc
Confidence 788886 44788888899997654
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.6e-43 Score=380.51 Aligned_cols=450 Identities=20% Similarity=0.219 Sum_probs=355.4
Q ss_pred CcCCcEEeCCCCCCCCC-----CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCccc
Q 037539 32 IERLQELVLGLGKFFET-----SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIE 105 (622)
Q Consensus 32 l~~L~~L~L~~n~i~~~-----~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~ 105 (622)
|+...+.|.+++.++.. ++|++|++++|.+++. +. .+.++++|++|++++|.+++..+ ..+..+ ++|+
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l-~~L~ 77 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG---DLRACANLQVLILKSSRINTIEG--DAFYSL-GSLE 77 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS---TTSSCTTCCEEECTTSCCCEECT--TTTTTC-TTCC
T ss_pred CCCCceEECCCCccccccccCCCCccEEECcCCccCccChh---hhhcCCcccEEECCCCCcCccCh--hhcccc-ccCC
Confidence 44555678888888766 6899999999999988 66 79999999999999999998877 678888 9999
Q ss_pred EEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCC-CCchhhcCCccCcEeEeecCCCCCcC-chhhhhcccc
Q 037539 106 TLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG-GIPKFFGNMCSLKKLRLSYNKLSGQY-SQVIQNLSFG 183 (622)
Q Consensus 106 ~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~l~l~ 183 (622)
+|++++|++++ ..|.. |+.+++|++|++++|.+++ ..|..++++++|++|++++|.+.+.. +.. ++
T Consensus 78 ~L~Ls~n~l~~-~~~~~------~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-----~~ 145 (549)
T 2z81_A 78 HLDLSDNHLSS-LSSSW------FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID-----FA 145 (549)
T ss_dssp EEECTTSCCCS-CCHHH------HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-----TT
T ss_pred EEECCCCccCc-cCHHH------hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhh-----hh
Confidence 99999999986 33333 4788999999999999986 35678999999999999999844444 456 44
Q ss_pred ccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCccc
Q 037539 184 CVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISD 262 (622)
Q Consensus 184 ~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 262 (622)
.+++ |++|++++|.+++..+. ++.+++|++|++++|.+.......+..+++|++|++++|++++..
T Consensus 146 ~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------ 212 (549)
T 2z81_A 146 GLTS-LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ------------ 212 (549)
T ss_dssp TCCE-EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCC------------
T ss_pred cccc-cCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccc------------
Confidence 4555 99999999999988777 999999999999999987544334467899999999999987542
Q ss_pred CCchhHHhcCCCCcEEEccCCcCcccCCC---------CcccEEeCCCCcCcccc------CccccCCCCCCEEEccCCc
Q 037539 263 SIPDWFWDLSNKLSYLNLSNNHFRGKLPD---------LSLRFDDLSSNLLSGGL------PDCWLHFDRLFILNLANNR 327 (622)
Q Consensus 263 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---------~~L~~L~ls~n~l~~~~------~~~~~~~~~L~~L~L~~n~ 327 (622)
..|..+....++|+.|++++|.+.+..+. ..++.+++++|.+.+.. ...+..+++++.|++.++.
T Consensus 213 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 292 (549)
T 2z81_A 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292 (549)
T ss_dssp CCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB
T ss_pred ccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccc
Confidence 11222334457899999999988753321 26889999998876531 2345678899999999987
Q ss_pred ccccC-----CCccCCCCCccEEeeeCCcCCCCCCccc-cCCCCccEEEccCCcccccCchh--HHhhcccccEeecCCC
Q 037539 328 LSGKI-----PDSMGFLNNIWTLNLHNNRLTGKLPSPL-RNFSQLRVLDLEKNAIFGEIPTW--IGESLQNLIVLSLKSN 399 (622)
Q Consensus 328 i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~i~~~~~~~--~~~~l~~L~~L~L~~n 399 (622)
+.... +..+...++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+.+|.. ....+++|++|++++|
T Consensus 293 i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 371 (549)
T 2z81_A 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371 (549)
T ss_dssp CSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred cchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC
Confidence 76321 111233578999999999998 566555 67999999999999997666532 1236899999999999
Q ss_pred cCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccC
Q 037539 400 KFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 400 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 479 (622)
++++..+. ...+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++ ++..+ .++|++|++++|+++
T Consensus 372 ~l~~~~~~---~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~ 444 (549)
T 2z81_A 372 HLRSMQKT---GEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLD 444 (549)
T ss_dssp CCCCHHHH---HHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCS
T ss_pred cccccccc---hhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChh
Confidence 99854321 112337999999999999999 678888999999999999999984 44433 369999999999999
Q ss_pred ccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcC
Q 037539 480 GSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLE 525 (622)
Q Consensus 480 ~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~ 525 (622)
+.. ..+++|++|++++|+++ .+|....+..++.+.+.+|..
T Consensus 445 ~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 445 SFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQL 485 (549)
T ss_dssp CCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCC
T ss_pred hhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCcc
Confidence 643 57899999999999998 788777788888888888844
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.5e-42 Score=379.64 Aligned_cols=490 Identities=21% Similarity=0.181 Sum_probs=298.8
Q ss_pred CCcEEeCCCCCCCCC--------CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcc
Q 037539 34 RLQELVLGLGKFFET--------SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSI 104 (622)
Q Consensus 34 ~L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L 104 (622)
++++|||++|.|+++ ++|++|+|++|.++.. +. +|.++++|++|+|++|++++..+ ..+.++ ++|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~---~f~~L~~L~~L~Ls~N~l~~l~~--~~f~~L-~~L 126 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG---AYQSLSHLSTLILTGNPIQSLAL--GAFSGL-SSL 126 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT---TTTTCTTCCEEECTTCCCCEECG--GGGTTC-TTC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChh---HhcCCCCCCEEEccCCcCCCCCH--HHhcCC-CCC
Confidence 567777777766432 6677777777777666 44 56777777777777777766555 455666 777
Q ss_pred cEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCC-CCchhhcCCccCcEeEeecCCCCCcCchhhhhcccc
Q 037539 105 ETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG-GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFG 183 (622)
Q Consensus 105 ~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~ 183 (622)
++|++++|++++ +|. ..|+++++|++|++++|.++. ..|..++.+++|++|++++|++++..+..+..+.
T Consensus 127 ~~L~Ls~N~l~~--l~~-----~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~-- 197 (635)
T 4g8a_A 127 QKLVAVETNLAS--LEN-----FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-- 197 (635)
T ss_dssp CEEECTTSCCCC--STT-----CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH--
T ss_pred CEEECCCCcCCC--CCh-----hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh--
Confidence 777777777664 221 234666777777777777654 3456666677777777777777766666554432
Q ss_pred ccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCc-cCccccCCCCCCCEEEccCCCCcccc------cccc--
Q 037539 184 CVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNG-TIDKSLSQLSKLESLSLDGNSLRAIS------LCIL-- 254 (622)
Q Consensus 184 ~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~------~~~~-- 254 (622)
........++++.|.+....+.......++.+++.+|.... ..+..+..+..++...+..+...... ...+
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence 22222445666666666544443334445556665554321 11122333333433333211110000 0000
Q ss_pred -----------------------------------cCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC--cccEE
Q 037539 255 -----------------------------------TSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL--SLRFD 297 (622)
Q Consensus 255 -----------------------------------~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~L~~L 297 (622)
...+.+. .++ . +.....++.|++.+|.+.+..+.. .++.+
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l 354 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVK-D-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 354 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECG-G-GGSCCCCSEEEEESCEESSCCCCBCTTCCEE
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-ccc-c-cccchhhhhhhcccccccCcCcccchhhhhc
Confidence 0000000 001 0 112235666666666655433321 55566
Q ss_pred eCCCCcCccccCccccCCCCCCEEEccCCcccc--cCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCc
Q 037539 298 DLSSNLLSGGLPDCWLHFDRLFILNLANNRLSG--KIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNA 375 (622)
Q Consensus 298 ~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 375 (622)
+++.|.+... .....+++|+.+++++|.+.. ..+..+..+.+|+.++++.+.+. ..+..+..+++|+.+++.++.
T Consensus 355 ~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~ 431 (635)
T 4g8a_A 355 TFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN 431 (635)
T ss_dssp EEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSE
T ss_pred ccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcc
Confidence 6665554432 223456777777777776642 33444455667777777777665 344456677778888887777
Q ss_pred ccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC-ccchHHhhcccccceeecCCccc
Q 037539 376 IFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD-GAIPEEIMDLVGLIALNLSRNHL 454 (622)
Q Consensus 376 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l 454 (622)
.....+...+..+++++.++++.|.+.+..+..+. .++.++.|++++|.+. +..|..|..+++|++|+|++|++
T Consensus 432 ~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~-----~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L 506 (635)
T 4g8a_A 432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 506 (635)
T ss_dssp EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT-----TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred ccccccccccccccccccccccccccccccccccc-----cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCcc
Confidence 65555555555677788888888887776666554 6777888888877643 34566777778888888888888
Q ss_pred cCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCC-c-CCccCcccccCCcCCCCCCC-
Q 037539 455 TGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT-Q-LQSFNASVYAGNLELCGLPL- 531 (622)
Q Consensus 455 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~-~-~~~l~~~~~~~n~~lc~~~~- 531 (622)
++..|..|.++++|++|+|++|++++..|..|..+++|++||+++|++++..|... . ..+++.+.+.+||+.|+|..
T Consensus 507 ~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 507 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred CCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 77777778888888888888888887777777788888888888888877666542 1 24566777788888887742
Q ss_pred -----------------CCCCCCCCCCCCCCCCCC
Q 037539 532 -----------------ANMCLDEESTPGPGTDDD 549 (622)
Q Consensus 532 -----------------~~~C~~~~~~~~~~~~~~ 549 (622)
.+.|.+|...+|....+.
T Consensus 587 ~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~ 621 (635)
T 4g8a_A 587 SFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 621 (635)
T ss_dssp HHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGC
T ss_pred HHHHHHHhCCCccCCCCCceeCCchHHCCCEeeee
Confidence 257999988887766554
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.6e-42 Score=371.20 Aligned_cols=459 Identities=18% Similarity=0.190 Sum_probs=317.0
Q ss_pred ccCcCCcEEeCCCCCCCCC-----CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCc
Q 037539 30 VNIERLQELVLGLGKFFET-----SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTS 103 (622)
Q Consensus 30 ~~l~~L~~L~L~~n~i~~~-----~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~ 103 (622)
..+...+++|++++.+++. ++|++|++++|.+++. +. .+.++++|++|+|++|.+++..+ ..+..+ ++
T Consensus 28 ~~~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l-~~ 101 (562)
T 3a79_B 28 FSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMP---DISFLSELRVLRLSHNRIRSLDF--HVFLFN-QD 101 (562)
T ss_dssp -----CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGG---GTTTCTTCCEEECCSCCCCEECT--TTTTTC-TT
T ss_pred cccCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChh---hhccCCCccEEECCCCCCCcCCH--HHhCCC-CC
Confidence 3455568899999988766 6789999999998888 55 78889999999999999888777 677888 89
Q ss_pred ccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCC-CchhhcCCccCcEeEeecCCCCCcCchhhhhccc
Q 037539 104 IETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGG-IPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSF 182 (622)
Q Consensus 104 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l 182 (622)
|++|++++|+++. +|.. .+++|++|++++|.+++. .|..|+++++|++|++++|.+++..... +
T Consensus 102 L~~L~Ls~N~l~~--lp~~--------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-----l 166 (562)
T 3a79_B 102 LEYLDVSHNRLQN--ISCC--------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP-----V 166 (562)
T ss_dssp CCEEECTTSCCCE--ECSC--------CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGG-----G
T ss_pred CCEEECCCCcCCc--cCcc--------ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhh-----h
Confidence 9999999998873 3321 678899999999998863 4678889999999999999887633222 1
Q ss_pred cccCCCcCEEEccCCcc--cccCCC-CCCCC-CCCEEEeecccCCccCc-cccCCCCCCCEEEccCCC------------
Q 037539 183 GCVVNSLEGLYLRWNDF--TGPIPH-LGGFS-SLEAWSLDVNCLNGTID-KSLSQLSKLESLSLDGNS------------ 245 (622)
Q Consensus 183 ~~~~~~L~~L~L~~n~~--~~~~~~-l~~l~-~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~------------ 245 (622)
..+ + |++|++++|.+ ++..+. +..+. ..-.+++++|.+.+.++ ..+..+++|+.|++++|+
T Consensus 167 ~~L-~-L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~ 244 (562)
T 3a79_B 167 AHL-H-LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244 (562)
T ss_dssp TTS-C-EEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH
T ss_pred hhc-e-eeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH
Confidence 112 1 48999998888 665555 54433 11133555555543322 233445555555555553
Q ss_pred ----------------CcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCC-------C---cccEEeC
Q 037539 246 ----------------LRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPD-------L---SLRFDDL 299 (622)
Q Consensus 246 ----------------l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------~---~L~~L~l 299 (622)
+.+.. +. .++.... .++|++|++++|.+.+.+|. . .++.+++
T Consensus 245 l~~l~~L~~L~L~~~~l~~~~---------~~-~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~ 312 (562)
T 3a79_B 245 LTRGPTLLNVTLQHIETTWKC---------SV-KLFQFFW--PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312 (562)
T ss_dssp HHSCSSCEEEEEEEEEECHHH---------HH-HHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred HhccCcceEEEecCCcCcHHH---------HH-HHHHhhh--cccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence 22110 00 1112211 23777788877777766554 1 2333334
Q ss_pred CCCcCccccC-cccc---CCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCc
Q 037539 300 SSNLLSGGLP-DCWL---HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNA 375 (622)
Q Consensus 300 s~n~l~~~~~-~~~~---~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 375 (622)
+.+.+ .+| ..+. ...+|++|++++|.+.... ....+++|++|++++|.+++..|..+..+++|++|++++|.
T Consensus 313 ~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 313 KNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp EECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred cccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 44443 222 1111 2256999999999886432 12678999999999999998889999999999999999999
Q ss_pred ccccCch--hHHhhcccccEeecCCCcCcccCChh-hhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCc
Q 037539 376 IFGEIPT--WIGESLQNLIVLSLKSNKFHGNIPYQ-FENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRN 452 (622)
Q Consensus 376 i~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 452 (622)
+ ..++. ..+..+++|++|++++|++++.+|.. +. .+++|++|++++|++++..|..+. ++|++|++++|
T Consensus 389 l-~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N 460 (562)
T 3a79_B 389 L-KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA-----WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN 460 (562)
T ss_dssp C-CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC-----CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS
T ss_pred c-CCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc-----CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC
Confidence 9 44432 22337899999999999999755543 33 689999999999999877665543 79999999999
Q ss_pred cccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccC---cccccCCcCCCCC
Q 037539 453 HLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFN---ASVYAGNLELCGL 529 (622)
Q Consensus 453 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~---~~~~~~n~~lc~~ 529 (622)
+++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.|.+|....+..+. ...+ .+...|+.
T Consensus 461 ~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~-~~~~~~~~ 538 (562)
T 3a79_B 461 RIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVV-RNSAGSVA 538 (562)
T ss_dssp CCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTE-ECSSSSBC
T ss_pred cCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcc-cccccCCC
Confidence 998 677777799999999999999995444448999999999999999999877542212110 0011 11223466
Q ss_pred CCCCCCCC
Q 037539 530 PLANMCLD 537 (622)
Q Consensus 530 ~~~~~C~~ 537 (622)
+....|..
T Consensus 539 ~~~~~C~~ 546 (562)
T 3a79_B 539 PDSAKCSG 546 (562)
T ss_dssp SSSSCBSS
T ss_pred CCCCccCC
Confidence 77778876
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.8e-40 Score=364.86 Aligned_cols=453 Identities=22% Similarity=0.196 Sum_probs=352.3
Q ss_pred ccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCC--------CCCccEEEcCCcccCCC-CcchHhhcCCC
Q 037539 5 HIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFE--------TSNINTFFLNTVSVTKS-SDWFQVVAKLH 75 (622)
Q Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~--------~~~L~~L~Ls~n~l~~~-~~~~~~l~~l~ 75 (622)
++++|+++++.+ +.+| ...+.++++|++|||++|.|++ +++|++|+|++|.++.. +. .|.+++
T Consensus 53 ~~~~LdLs~N~i-~~l~----~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~---~f~~L~ 124 (635)
T 4g8a_A 53 STKNLDLSFNPL-RHLG----SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG---AFSGLS 124 (635)
T ss_dssp TCCEEECTTSCC-CEEC----TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG---GGTTCT
T ss_pred CCCEEEeeCCCC-CCCC----HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH---HhcCCC
Confidence 456889998875 5543 2334589999999999998844 38999999999999988 55 789999
Q ss_pred CCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcC
Q 037539 76 SLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGN 155 (622)
Q Consensus 76 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 155 (622)
+|++|+|++|.+++..+ ..+.++ ++|++|++++|.++.+..|..+ +.+++|++|++++|++++..+..|..
T Consensus 125 ~L~~L~Ls~N~l~~l~~--~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~------~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 125 SLQKLVAVETNLASLEN--FPIGHL-KTLKELNVAHNLIQSFKLPEYF------SNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp TCCEEECTTSCCCCSTT--CCCTTC-TTCCEEECCSSCCCCCCCCGGG------GGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred CCCEEECCCCcCCCCCh--hhhhcC-cccCeeccccCccccCCCchhh------ccchhhhhhcccCccccccccccccc
Confidence 99999999999998877 678888 9999999999999875666655 78899999999999999888888776
Q ss_pred CccCc----EeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccc------------------------------
Q 037539 156 MCSLK----KLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTG------------------------------ 201 (622)
Q Consensus 156 l~~L~----~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~------------------------------ 201 (622)
+.+++ .++++.|.+....+..+.... ++.+++.+|....
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~-------~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-------LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCE-------EEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhhhhhhhhcccCcccccCcccccchh-------hhhhhhhcccccccccchhhcCCcccccccccccccccccccc
Confidence 65544 677888888765555433321 3344444332110
Q ss_pred -----------------------------cCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccc
Q 037539 202 -----------------------------PIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLC 252 (622)
Q Consensus 202 -----------------------------~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 252 (622)
....+..+.+++.+++.++.+.... .+.....|+.|++.+|.+...
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--- 343 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQF--- 343 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSC---
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCc---
Confidence 0011333445555555555544322 344556677777777765532
Q ss_pred cccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC---cccEEeCCCCcCcc--ccCccccCCCCCCEEEccCCc
Q 037539 253 ILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL---SLRFDDLSSNLLSG--GLPDCWLHFDRLFILNLANNR 327 (622)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~L~~n~ 327 (622)
+. ...+.++.+++..|......+.. .++.++++.|.+.. ..+..+..+.+|+.+++..+.
T Consensus 344 ------------~~---~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~ 408 (635)
T 4g8a_A 344 ------------PT---LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG 408 (635)
T ss_dssp ------------CC---CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS
T ss_pred ------------Cc---ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccc
Confidence 11 12358999999999877655443 79999999998864 456677788999999999998
Q ss_pred ccccCCCccCCCCCccEEeeeCCcCCCCC-CccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcc-cC
Q 037539 328 LSGKIPDSMGFLNNIWTLNLHNNRLTGKL-PSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHG-NI 405 (622)
Q Consensus 328 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~ 405 (622)
+.. .+..+..+++|+.++++.+...... ...+..+++++.+++++|.+.+..+. .+..++.|++|++++|.+.. ..
T Consensus 409 ~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~-~~~~~~~L~~L~Ls~N~~~~~~~ 486 (635)
T 4g8a_A 409 VIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFL 486 (635)
T ss_dssp EEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEE
T ss_pred ccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccc-ccccchhhhhhhhhhcccccccC
Confidence 874 4556788999999999988765443 35688999999999999999555544 44479999999999998553 45
Q ss_pred ChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCcc
Q 037539 406 PYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCS 485 (622)
Q Consensus 406 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 485 (622)
|..+. .+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..|..
T Consensus 487 ~~~~~-----~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 487 PDIFT-----ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp CSCCT-----TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred chhhh-----hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 55555 7999999999999999888999999999999999999999888999999999999999999999999999
Q ss_pred ccCC-CCCCEEECcCCcCcccCCC
Q 037539 486 LSQL-SGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 486 l~~l-~~L~~L~ls~N~l~~~~p~ 508 (622)
+..+ ++|++|++++|++.|.+..
T Consensus 562 l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 562 LQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp TTCCCTTCCEEECTTCCBCCSGGG
T ss_pred HHhhhCcCCEEEeeCCCCcccCCc
Confidence 9988 6899999999999998764
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.2e-41 Score=364.30 Aligned_cols=428 Identities=21% Similarity=0.204 Sum_probs=322.2
Q ss_pred CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccc
Q 037539 49 SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKA 128 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 128 (622)
...+++++++|.++..|. .+. ++|++|++++|.+++..+ ..+..+ ++|++|++++|++++ ..| .+
T Consensus 31 ~~~~~l~ls~~~L~~ip~---~~~--~~L~~L~Ls~N~i~~~~~--~~~~~l-~~L~~L~Ls~N~l~~-~~~------~~ 95 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPK---DLP--PRTKALSLSQNSISELRM--PDISFL-SELRVLRLSHNRIRS-LDF------HV 95 (562)
T ss_dssp --CCEEECTTSCCCSCCT---TSC--TTCCEEECCSSCCCCCCG--GGTTTC-TTCCEEECCSCCCCE-ECT------TT
T ss_pred CCCcEEEcCCCCCccCCC---CCC--CCcCEEECCCCCccccCh--hhhccC-CCccEEECCCCCCCc-CCH------HH
Confidence 445999999999998865 443 899999999999999877 788899 999999999999986 223 34
Q ss_pred cCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCc-CchhhhhccccccCCCcCEEEccCCcccccCCCCC
Q 037539 129 FQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQ-YSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLG 207 (622)
Q Consensus 129 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~-~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~ 207 (622)
|..+++|++|++++|.++ .+|.. .+++|++|++++|++++. .|..+. .+++ |++|++++|.+.+. .+.
T Consensus 96 ~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~-----~l~~-L~~L~L~~n~l~~~--~~~ 164 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFG-----NLTK-LTFLGLSAAKFRQL--DLL 164 (562)
T ss_dssp TTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGG-----GCTT-CCEEEEECSBCCTT--TTG
T ss_pred hCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhc-----ccCc-ccEEecCCCccccC--chh
Confidence 588999999999999999 55655 899999999999999974 357744 4455 99999999998752 356
Q ss_pred CCCCC--CEEEeecccC--CccCccccCCCC--CCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEcc
Q 037539 208 GFSSL--EAWSLDVNCL--NGTIDKSLSQLS--KLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLS 281 (622)
Q Consensus 208 ~l~~L--~~L~L~~n~l--~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 281 (622)
.+++| ++|++++|.+ ++..+..+..+. .+ .+++++|.+.+. ++......+++|+.++++
T Consensus 165 ~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~--------------~~~~~~~~l~~L~~L~l~ 229 (562)
T 3a79_B 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSV--------------QVNMSVNALGHLQLSNIK 229 (562)
T ss_dssp GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCC--------------CCEEEESSEEEEEEEEEE
T ss_pred hhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhh--------------hhhhcccccceEEEeccc
Confidence 66666 9999999999 888888877655 23 557777776542 222222223344555554
Q ss_pred CC----------------------------cCcccC--------CCCcccEEeCCCCcCccccCccc-----cCCCCCCE
Q 037539 282 NN----------------------------HFRGKL--------PDLSLRFDDLSSNLLSGGLPDCW-----LHFDRLFI 320 (622)
Q Consensus 282 ~n----------------------------~l~~~~--------~~~~L~~L~ls~n~l~~~~~~~~-----~~~~~L~~ 320 (622)
+| .+.+.. ...++++|++++|.+.+.+|..+ ..++.|+.
T Consensus 230 ~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~ 309 (562)
T 3a79_B 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309 (562)
T ss_dssp CCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEE
T ss_pred ccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheeh
Confidence 44 332210 01167777777777776666655 44555555
Q ss_pred EEccCCcccccCC-CccC---CCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeec
Q 037539 321 LNLANNRLSGKIP-DSMG---FLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSL 396 (622)
Q Consensus 321 L~L~~n~i~~~~~-~~~~---~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L 396 (622)
++++.+.+ .+| ..+. ...+|++|++++|.+.... ....+++|++|++++|.+.+.+|..+. .+++|++|++
T Consensus 310 ~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L 384 (562)
T 3a79_B 310 EHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLIL 384 (562)
T ss_dssp EEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEEC
T ss_pred hhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEEC
Confidence 55555554 222 1111 1256899999999886332 236889999999999999777777765 7999999999
Q ss_pred CCCcCcccC--ChhhhHhHhhhcCCccEEECCCCcCCccchH-HhhcccccceeecCCccccCCCccccCCCCCCCEEeC
Q 037539 397 KSNKFHGNI--PYQFENEYKSTLGLVRCLDLSSNKLDGAIPE-EIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDL 473 (622)
Q Consensus 397 ~~n~l~~~~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 473 (622)
++|++++.. |..+. .+++|+.|++++|.+++.+|. .+..+++|++|++++|.+++..|..+. ++|++|+|
T Consensus 385 ~~N~l~~~~~~~~~~~-----~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L 457 (562)
T 3a79_B 385 QRNGLKNFFKVALMTK-----NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL 457 (562)
T ss_dssp CSSCCCBTTHHHHTTT-----TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEEC
T ss_pred CCCCcCCcccchhhhc-----CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEEC
Confidence 999998643 23333 799999999999999974554 588899999999999999876666554 79999999
Q ss_pred CCCccCccCCccccCCCCCCEEECcCCcCcccCCCC--CcCCccCcccccCCcCCCCCCC
Q 037539 474 SRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG--TQLQSFNASVYAGNLELCGLPL 531 (622)
Q Consensus 474 s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~--~~~~~l~~~~~~~n~~lc~~~~ 531 (622)
++|+++ .+|..+..+++|++|++++|+++ .+|.. ..+..++.+.+.+||+.|+|+.
T Consensus 458 ~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 458 HNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 999999 67777779999999999999999 56654 4567788889999999998753
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.5e-39 Score=343.28 Aligned_cols=383 Identities=21% Similarity=0.200 Sum_probs=271.4
Q ss_pred CCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCC-CchhhcC
Q 037539 77 LKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGG-IPKFFGN 155 (622)
Q Consensus 77 L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~ 155 (622)
-+.++.+++.++.. | .++++|++|++++|.+++ ..|. .|+.+++|++|++++|.+.+. .+..|.+
T Consensus 12 ~~~~~c~~~~l~~l-p------~l~~~l~~L~Ls~n~i~~-~~~~------~~~~l~~L~~L~L~~n~~~~~i~~~~~~~ 77 (455)
T 3v47_A 12 GYNAICINRGLHQV-P------ELPAHVNYVDLSLNSIAE-LNET------SFSRLQDLQFLKVEQQTPGLVIRNNTFRG 77 (455)
T ss_dssp TTEEECCSSCCSSC-C------CCCTTCCEEECCSSCCCE-ECTT------TTSSCTTCCEEECCCCSTTCEECTTTTTT
T ss_pred ccccCcCCCCcccC-C------CCCCccCEEEecCCccCc-CChh------HhccCccccEEECcCCcccceECcccccc
Confidence 34567777766543 3 134778888888888875 2232 347778888888888877643 3566788
Q ss_pred CccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCC--C-CCCCCCCCEEEeecccCCccCccc-cC
Q 037539 156 MCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIP--H-LGGFSSLEAWSLDVNCLNGTIDKS-LS 231 (622)
Q Consensus 156 l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~--~-l~~l~~L~~L~L~~n~l~~~~~~~-l~ 231 (622)
+++|++|++++|++++..|..+.. +++ |++|++++|.+++..+ . ++.+++|++|++++|.+++..|.. +.
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 151 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNG-----LAN-LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTT-----CTT-CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG
T ss_pred cccCCEEeCCCCccCccChhhccC-----ccc-CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccC
Confidence 888888888888887777777443 444 8888888888775322 2 777888888888888887766655 67
Q ss_pred CCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhc-CCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCc
Q 037539 232 QLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDL-SNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPD 310 (622)
Q Consensus 232 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~ 310 (622)
.+++|++|++++|.+++.. +..+... .++++.|++++|.+.+..+.. +......
T Consensus 152 ~l~~L~~L~L~~n~l~~~~--------------~~~l~~l~~~~L~~L~l~~n~l~~~~~~~-----------~~~~~~~ 206 (455)
T 3v47_A 152 NMRRFHVLDLTFNKVKSIC--------------EEDLLNFQGKHFTLLRLSSITLQDMNEYW-----------LGWEKCG 206 (455)
T ss_dssp GCTTCCEEECTTCCBSCCC--------------TTTSGGGTTCEEEEEECTTCBCTTCSTTC-----------TTHHHHC
T ss_pred CCCcccEEeCCCCcccccC--------------hhhhhccccccccccccccCcccccchhh-----------ccccccc
Confidence 7888888888888776432 2222221 135667777766665432210 0000001
Q ss_pred cccCCCCCCEEEccCCcccccCCCccCC---CCCccEEeeeCCcCCC----------CCCcccc--CCCCccEEEccCCc
Q 037539 311 CWLHFDRLFILNLANNRLSGKIPDSMGF---LNNIWTLNLHNNRLTG----------KLPSPLR--NFSQLRVLDLEKNA 375 (622)
Q Consensus 311 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~---l~~L~~L~Ls~n~i~~----------~~~~~l~--~l~~L~~L~L~~n~ 375 (622)
.+..+++|++|++++|++++..|..+.. .++|+.|++++|...+ ..+..+. ..++|++|++++|.
T Consensus 207 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp CTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred cccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence 1223455666666666665544443322 2556666666554332 1112222 23689999999999
Q ss_pred ccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCcccc
Q 037539 376 IFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLT 455 (622)
Q Consensus 376 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 455 (622)
+.+..|..+. .+++|++|++++|++.+..+..+. .+++|++|++++|.+++..+..+..+++|++|+|++|.++
T Consensus 287 l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 287 IFALLKSVFS-HFTDLEQLTLAQNEINKIDDNAFW-----GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360 (455)
T ss_dssp CCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTT-----TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred ccccchhhcc-cCCCCCEEECCCCcccccChhHhc-----CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence 9666666555 789999999999999988777776 7899999999999999888999999999999999999999
Q ss_pred CCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCC
Q 037539 456 GPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT 510 (622)
Q Consensus 456 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~ 510 (622)
+..|..+..+++|++|+|++|++++..+..+..+++|++|++++|+++|.+|...
T Consensus 361 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 8889999999999999999999998777788999999999999999999999653
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.8e-38 Score=335.18 Aligned_cols=380 Identities=22% Similarity=0.207 Sum_probs=241.6
Q ss_pred cEEeCCCCCCCCC----CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEcc
Q 037539 36 QELVLGLGKFFET----SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLS 110 (622)
Q Consensus 36 ~~L~L~~n~i~~~----~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls 110 (622)
+.++.+++.++.+ ++|++|++++|.+++. +. .+.++++|++|++++|.+.+..+. ..+..+ ++|++|+++
T Consensus 13 ~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~L~~n~~~~~i~~-~~~~~l-~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLHQVPELPAHVNYVDLSLNSIAELNET---SFSRLQDLQFLKVEQQTPGLVIRN-NTFRGL-SSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTT---TTSSCTTCCEEECCCCSTTCEECT-TTTTTC-TTCCEEECT
T ss_pred cccCcCCCCcccCCCCCCccCEEEecCCccCcCChh---HhccCccccEEECcCCcccceECc-cccccc-ccCCEEeCC
Confidence 3566666665554 5677777777777776 55 677777777777777777644321 456666 777777777
Q ss_pred CCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchh--hcCCccCcEeEeecCCCCCcCchhhhhccccccCCC
Q 037539 111 DNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKF--FGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNS 188 (622)
Q Consensus 111 ~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~ 188 (622)
+|++++ ..|. .|+.+++|++|++++|.+++..+.. |..+++|++|++++|.+++..|..+ +..+++
T Consensus 88 ~n~l~~-~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~~l~~- 155 (455)
T 3v47_A 88 YNQFLQ-LETG------AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF----FLNMRR- 155 (455)
T ss_dssp TCTTCE-ECTT------TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG----GGGCTT-
T ss_pred CCccCc-cChh------hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc----cCCCCc-
Confidence 777764 2233 3366777777777777777544443 7777777777777777776666542 233333
Q ss_pred cCEEEccCCcccccCCC-CCCC--CCCCEEEeecccCCccCccc--------cCCCCCCCEEEccCCCCcccccccccCC
Q 037539 189 LEGLYLRWNDFTGPIPH-LGGF--SSLEAWSLDVNCLNGTIDKS--------LSQLSKLESLSLDGNSLRAISLCILTSP 257 (622)
Q Consensus 189 L~~L~L~~n~~~~~~~~-l~~l--~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 257 (622)
|++|++++|.+.+..+. +..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|++++
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--------- 226 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE--------- 226 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH---------
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc---------
Confidence 77777777777766655 5544 56777777777776544332 2345667777777776653
Q ss_pred CCcccCCchhHHhc--CCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCc
Q 037539 258 IGISDSIPDWFWDL--SNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDS 335 (622)
Q Consensus 258 ~~l~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~ 335 (622)
.+|..+... .++++.|++++|...+... ..+.+.+..+..+..+
T Consensus 227 -----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~-------------------- 272 (455)
T 3v47_A 227 -----SMAKRFFDAIAGTKIQSLILSNSYNMGSSF---------GHTNFKDPDNFTFKGL-------------------- 272 (455)
T ss_dssp -----HHHHHHHHHTTTCCEEEEECTTCTTTSCCT---------TCCSSCCCCTTTTGGG--------------------
T ss_pred -----cchhhhhccccccceeeEeecccccccccc---------chhhhccCcccccccc--------------------
Confidence 334444432 1456666666655432110 0111111111111110
Q ss_pred cCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhh
Q 037539 336 MGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKS 415 (622)
Q Consensus 336 ~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 415 (622)
..++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+++..+..+.
T Consensus 273 --~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~----- 344 (455)
T 3v47_A 273 --EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW-GLTHLLKLNLSQNFLGSIDSRMFE----- 344 (455)
T ss_dssp --TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGGT-----
T ss_pred --cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc-CcccCCEEECCCCccCCcChhHhc-----
Confidence 124566666666666655555666666666666666666433333333 566666666666666655555544
Q ss_pred hcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCC
Q 037539 416 TLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIP 483 (622)
Q Consensus 416 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 483 (622)
.+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 67778888888888887778888889999999999999987777778899999999999999997766
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.8e-38 Score=330.16 Aligned_cols=374 Identities=26% Similarity=0.265 Sum_probs=239.3
Q ss_pred CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcc-------------cEEEccCCCCC
Q 037539 49 SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSI-------------ETLDLSDNNLP 115 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L-------------~~L~Ls~n~l~ 115 (622)
++|++|++++|.+...|. .++++++|++|++++|.+.+..| ..+.++ ++| ++|++++|+++
T Consensus 11 ~~L~~L~l~~n~l~~iP~---~i~~L~~L~~L~l~~n~~~~~~p--~~~~~l-~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPV---EAENVKSKTEYYNAWSEWERNAP--PGNGEQ-REMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSC--TTSCCC-HHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred ccchhhhcccCchhhCCh---hHhcccchhhhhccCCcccccCC--cccccc-hhcchhhhhhhhccCCCEEEecCCccc
Confidence 566777777777744455 67777777777777777766666 556655 543 77888888776
Q ss_pred CCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEcc
Q 037539 116 SSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLR 195 (622)
Q Consensus 116 ~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~ 195 (622)
+ +|. ..++|++|++++|.+++ +|.. +++|++|++++|.+++... .+.+|++|+++
T Consensus 85 ~--lp~---------~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~----------~~~~L~~L~L~ 139 (454)
T 1jl5_A 85 S--LPE---------LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD----------LPPLLEYLGVS 139 (454)
T ss_dssp C--CCS---------CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS----------CCTTCCEEECC
T ss_pred c--CCC---------CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC----------CCCCCCEEECc
Confidence 4 332 12677888888887775 4532 3677888888887765221 11148888888
Q ss_pred CCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCC
Q 037539 196 WNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKL 275 (622)
Q Consensus 196 ~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 275 (622)
+|.+++ +|.++.+++|++|++++|.+++ +|.. .++|++|++++|++++ +|. + ..+++|
T Consensus 140 ~n~l~~-lp~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~---------------l~~-~-~~l~~L 197 (454)
T 1jl5_A 140 NNQLEK-LPELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE---------------LPE-L-QNLPFL 197 (454)
T ss_dssp SSCCSS-CCCCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS---------------CCC-C-TTCTTC
T ss_pred CCCCCC-CcccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc---------------Ccc-c-cCCCCC
Confidence 887775 4567778888888888887774 3433 2478888888887763 332 2 334678
Q ss_pred cEEEccCCcCcccCCCC--cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCC
Q 037539 276 SYLNLSNNHFRGKLPDL--SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLT 353 (622)
Q Consensus 276 ~~L~l~~n~l~~~~~~~--~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~ 353 (622)
++|++++|++.+ +|.. +++.|++++|.+. .+| .+..+++|++|++++|++++ +|.. +++|++|++++|.+.
T Consensus 198 ~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 198 TAIYADNNSLKK-LPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp CEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred CEEECCCCcCCc-CCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence 888888887775 3332 7888888888887 555 48889999999999999985 4432 478999999999998
Q ss_pred CCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCcc
Q 037539 354 GKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA 433 (622)
Q Consensus 354 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 433 (622)
+ +|.. .++|++|++++|.+.+ +|. ..++|++|++++|++++... ..++|++|++++|++++
T Consensus 271 ~-l~~~---~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i~~---------~~~~L~~L~Ls~N~l~~- 331 (454)
T 1jl5_A 271 D-LPEL---PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSLCD---------LPPSLEELNVSNNKLIE- 331 (454)
T ss_dssp C-CCCC---CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEECC---------CCTTCCEEECCSSCCSC-
T ss_pred c-cCcc---cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcccC---------CcCcCCEEECCCCcccc-
Confidence 5 4543 3789999999999843 432 13689999999999885321 23589999999999985
Q ss_pred chHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCc--cCCccccCC-------------CCCCEEECc
Q 037539 434 IPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSG--SIPCSLSQL-------------SGLGVLDLS 498 (622)
Q Consensus 434 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l-------------~~L~~L~ls 498 (622)
+|.. +++|++|++++|.+++ +|. .+++|++|++++|++++ .+|..+..+ ++|++|+++
T Consensus 332 lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls 404 (454)
T 1jl5_A 332 LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVE 404 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------
T ss_pred cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECC
Confidence 5543 5889999999999984 555 47899999999999998 678888777 889999999
Q ss_pred CCcCcc--cCCC
Q 037539 499 YNNLSG--KIPS 508 (622)
Q Consensus 499 ~N~l~~--~~p~ 508 (622)
+|++++ .+|.
T Consensus 405 ~N~l~~~~~iP~ 416 (454)
T 1jl5_A 405 TNPLREFPDIPE 416 (454)
T ss_dssp ------------
T ss_pred CCcCCccccchh
Confidence 999997 6664
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=331.58 Aligned_cols=324 Identities=19% Similarity=0.163 Sum_probs=166.5
Q ss_pred cccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCC
Q 037539 134 SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSL 212 (622)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L 212 (622)
++++|++++|.+++..+..|.++++|++|++++|.+++..|..+ ..+++ |++|+|++|.++...+. |.++++|
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-----~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-----NNLFN-LRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-----TTCTT-CCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhh-----hCCcc-CCEEECCCCcCCccCcccccCCCCC
Confidence 44555555555554444455555555555555555554444442 22222 55555555555444333 4555555
Q ss_pred CEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC
Q 037539 213 EAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL 292 (622)
Q Consensus 213 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 292 (622)
++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------------------------- 142 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-------------------------------------------- 142 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE--------------------------------------------
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccce--------------------------------------------
Confidence 555555555554444455555555555555554432
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 143 --------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 143 --------------ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp --------------ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred --------------eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence 112223334444444444444443333334444445555555554444444444455555555555
Q ss_pred CCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCc
Q 037539 373 KNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRN 452 (622)
Q Consensus 373 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 452 (622)
+|...+.++...+ ...+|+.|++++|.++...+..+. .+++|+.|+|++|.+++..+..|..+++|++|+|++|
T Consensus 209 ~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 209 HWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVR-----HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp CCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHT-----TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS
T ss_pred CCccccccCcccc-cCccccEEECcCCcccccCHHHhc-----CccccCeeECCCCcCCccChhhccccccCCEEECCCC
Confidence 5444444444443 233555555555555533322222 4555666666666665555555666666666666666
Q ss_pred cccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCCC
Q 037539 453 HLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELC 527 (622)
Q Consensus 453 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc 527 (622)
.+++..+..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.|.++..+.+.......+.++...|
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C 357 (477)
T 2id5_A 283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTC 357 (477)
T ss_dssp CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBE
T ss_pred ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCcee
Confidence 666666666666666777777776666655556666666777777777766655433222222223344444444
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.5e-37 Score=324.23 Aligned_cols=397 Identities=23% Similarity=0.289 Sum_probs=224.5
Q ss_pred ccccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCCC--------C-------------CccEEEcCCccc
Q 037539 3 YKHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFET--------S-------------NINTFFLNTVSV 61 (622)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--------~-------------~L~~L~Ls~n~l 61 (622)
.+++++++++++++ +.+|.+++ ++++|++|++++|.+.+. + ++++|++++|.+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~-----~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAE-----NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred cccchhhhcccCch-hhCChhHh-----cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 46788899999887 88888777 899999999998876432 2 358899999988
Q ss_pred CCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEee
Q 037539 62 TKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLS 141 (622)
Q Consensus 62 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~ 141 (622)
++.|.+ .++|++|++++|.+++ .| . .. ++|++|++++|++++ +|. ..++|++|+++
T Consensus 84 ~~lp~~------~~~L~~L~l~~n~l~~-lp--~---~~-~~L~~L~l~~n~l~~--l~~---------~~~~L~~L~L~ 139 (454)
T 1jl5_A 84 SSLPEL------PPHLESLVASCNSLTE-LP--E---LP-QSLKSLLVDNNNLKA--LSD---------LPPLLEYLGVS 139 (454)
T ss_dssp SCCCSC------CTTCSEEECCSSCCSS-CC--C---CC-TTCCEEECCSSCCSC--CCS---------CCTTCCEEECC
T ss_pred ccCCCC------cCCCCEEEccCCcCCc-cc--c---cc-CCCcEEECCCCccCc--ccC---------CCCCCCEEECc
Confidence 887641 3688999999998887 34 1 23 788999999998874 221 12689999999
Q ss_pred cccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeeccc
Q 037539 142 DSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNC 221 (622)
Q Consensus 142 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~ 221 (622)
+|.+++ +| .|+.+++|++|++++|++++ .|..+ . +|++|++++|.+++ +|.++.+++|++|++++|.
T Consensus 140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~--------~-~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP--------P-SLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNS 206 (454)
T ss_dssp SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC--------T-TCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC
T ss_pred CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc--------c-cccEEECcCCcCCc-CccccCCCCCCEEECCCCc
Confidence 998885 66 58889999999999998886 34321 1 49999999998886 4568888999999999998
Q ss_pred CCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC--cccEEeC
Q 037539 222 LNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL--SLRFDDL 299 (622)
Q Consensus 222 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~L~~L~l 299 (622)
+++ +|.. .++|++|++++|.++ .+|. +..+++|++|++++|++.+ +|.. +++.|++
T Consensus 207 l~~-l~~~---~~~L~~L~l~~n~l~---------------~lp~--~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l 264 (454)
T 1jl5_A 207 LKK-LPDL---PLSLESIVAGNNILE---------------ELPE--LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNV 264 (454)
T ss_dssp CSS-CCCC---CTTCCEEECCSSCCS---------------SCCC--CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEEC
T ss_pred CCc-CCCC---cCcccEEECcCCcCC---------------cccc--cCCCCCCCEEECCCCcCCc-ccccccccCEEEC
Confidence 885 3332 258899999998876 3443 2345688889888888875 3332 6777777
Q ss_pred CCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCC-CCccEEEccCCcccc
Q 037539 300 SSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNF-SQLRVLDLEKNAIFG 378 (622)
Q Consensus 300 s~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l-~~L~~L~L~~n~i~~ 378 (622)
++|.+.+ +|.. +++|++|++++|++++. +. ..++|++|++++|.+++ ++ .+ ++|++|++++|.+.
T Consensus 265 ~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~- 330 (454)
T 1jl5_A 265 RDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLI- 330 (454)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCS-
T ss_pred CCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCccc-
Confidence 7777765 3332 35677777777777642 11 12567777777777763 21 22 46777777777773
Q ss_pred cCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCc--cchHHhhcccccceeecCCccccC
Q 037539 379 EIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDG--AIPEEIMDLVGLIALNLSRNHLTG 456 (622)
Q Consensus 379 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~ 456 (622)
.+|.. +++|++|++++|++++ +|. .+++|++|++++|++++ .+|..+.++ +.|.+.+
T Consensus 331 ~lp~~----~~~L~~L~L~~N~l~~-lp~--------~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~ 389 (454)
T 1jl5_A 331 ELPAL----PPRLERLIASFNHLAE-VPE--------LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLA 389 (454)
T ss_dssp CCCCC----CTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC---
T ss_pred ccccc----CCcCCEEECCCCcccc-ccc--------hhhhccEEECCCCCCCcCCCChHHHHhh--------hhccccc
Confidence 35543 4677777777777763 332 25667777777777765 445443322 2344444
Q ss_pred CCccccCCCCCCCEEeCCCCccCc--cCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 457 PITPKIGELTSLDFLDLSRNLFSG--SIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 457 ~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
.+|.. +++|+.|++++|++++ .+|. +++.|.+.+|.+.+.+|.
T Consensus 390 ~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 390 EVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ------------------------------------------------------
T ss_pred ccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCcccc
Confidence 55542 4899999999999996 4553 577788899988876554
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.8e-35 Score=313.95 Aligned_cols=303 Identities=25% Similarity=0.364 Sum_probs=180.0
Q ss_pred CCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCC
Q 037539 130 QHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGF 209 (622)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l 209 (622)
..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++ |++|++++|.+.+ .+.+..+
T Consensus 87 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-------~~~l~~-L~~L~l~~n~l~~-~~~~~~l 155 (466)
T 1o6v_A 87 KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-------LKNLTN-LNRLELSSNTISD-ISALSGL 155 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-------GTTCTT-CSEEEEEEEEECC-CGGGTTC
T ss_pred hccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-------HcCCCC-CCEEECCCCccCC-ChhhccC
Confidence 344444444444444443222 4444444444444444443322 222222 5555555544443 2224445
Q ss_pred CCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccC
Q 037539 210 SSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKL 289 (622)
Q Consensus 210 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 289 (622)
++|++|+++ +.+.+.. .+..+++|++|++++|.+++. +. ...+++|++|++++|.+.+
T Consensus 156 ~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~---------------~~--l~~l~~L~~L~l~~n~l~~-- 213 (466)
T 1o6v_A 156 TSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI---------------SV--LAKLTNLESLIATNNQISD-- 213 (466)
T ss_dssp TTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC---------------GG--GGGCTTCSEEECCSSCCCC--
T ss_pred CcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC---------------hh--hccCCCCCEEEecCCcccc--
Confidence 555555553 2232221 255555555555555555421 11 1222355555555544431
Q ss_pred CCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEE
Q 037539 290 PDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVL 369 (622)
Q Consensus 290 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 369 (622)
..+ +..+++|++|++++|++++. ..+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 214 -----------------~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 270 (466)
T 1o6v_A 214 -----------------ITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270 (466)
T ss_dssp -----------------CGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred -----------------ccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEE
Confidence 111 44556666666666666543 245666777777777777764433 6677777777
Q ss_pred EccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeec
Q 037539 370 DLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNL 449 (622)
Q Consensus 370 ~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 449 (622)
++++|.+. .++. + ..+++|+.|++++|++.+..+ + ..+++|+.|++++|++++..| +..+++|++|++
T Consensus 271 ~l~~n~l~-~~~~-~-~~l~~L~~L~L~~n~l~~~~~--~-----~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 271 KLGANQIS-NISP-L-AGLTALTNLELNENQLEDISP--I-----SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp ECCSSCCC-CCGG-G-TTCTTCSEEECCSSCCSCCGG--G-----GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred ECCCCccC-cccc-c-cCCCccCeEEcCCCcccCchh--h-----cCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 77777773 3333 2 257777777777777775443 2 267888888888888876655 678888888888
Q ss_pred CCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcc
Q 037539 450 SRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 450 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 504 (622)
++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 88888864 567888899999999998887766 7888889999999998885
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.7e-35 Score=311.57 Aligned_cols=345 Identities=23% Similarity=0.360 Sum_probs=260.2
Q ss_pred CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccc
Q 037539 49 SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKA 128 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 128 (622)
++++.|+++++.+...+ .+..+++|++|++++|.+++.. .+..+ ++|++|++++|.+++ ++.
T Consensus 46 ~~l~~L~l~~~~i~~l~----~~~~l~~L~~L~Ls~n~l~~~~----~~~~l-~~L~~L~l~~n~l~~--~~~------- 107 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID----GVEYLNNLTQINFSNNQLTDIT----PLKNL-TKLVDILMNNNQIAD--ITP------- 107 (466)
T ss_dssp HTCCEEECCSSCCCCCT----TGGGCTTCCEEECCSSCCCCCG----GGTTC-TTCCEEECCSSCCCC--CGG-------
T ss_pred ccccEEecCCCCCccCc----chhhhcCCCEEECCCCccCCch----hhhcc-ccCCEEECCCCcccc--Chh-------
Confidence 56777777777666554 3667788888888888877653 26667 888888888888764 221
Q ss_pred cCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCC
Q 037539 129 FQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGG 208 (622)
Q Consensus 129 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~ 208 (622)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+.. . ++.+++ |++|+++ |.+.+. +.+..
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~-----~~~l~~-L~~L~l~-~~~~~~-~~~~~ 175 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--A-----LSGLTS-LQQLSFG-NQVTDL-KPLAN 175 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--G-----GTTCTT-CSEEEEE-ESCCCC-GGGTT
T ss_pred hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--h-----hccCCc-ccEeecC-CcccCc-hhhcc
Confidence 4677888888888888875432 788888888888888877532 2 444555 8888886 333332 23778
Q ss_pred CCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCccc
Q 037539 209 FSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGK 288 (622)
Q Consensus 209 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 288 (622)
+++|++|++++|.+++. ..+..+++|++|++++|.+++.. | ...+++|+.|++++|++.+
T Consensus 176 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--------------~---~~~l~~L~~L~l~~n~l~~- 235 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDIT--------------P---LGILTNLDELSLNGNQLKD- 235 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--------------G---GGGCTTCCEEECCSSCCCC-
T ss_pred CCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccc--------------c---ccccCCCCEEECCCCCccc-
Confidence 88888888888888754 34778888888988888876422 2 2334678888888777652
Q ss_pred CCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccE
Q 037539 289 LPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRV 368 (622)
Q Consensus 289 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 368 (622)
+ ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++
T Consensus 236 -------------------~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 291 (466)
T 1o6v_A 236 -------------------I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 291 (466)
T ss_dssp -------------------C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred -------------------c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCe
Confidence 1 346778889999999998886544 7888999999999999885433 788999999
Q ss_pred EEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceee
Q 037539 369 LDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALN 448 (622)
Q Consensus 369 L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 448 (622)
|++++|.+.+ ++. + ..+++|+.|++++|++.+..| +. .+++|+.|++++|++++. ..+..+++|+.|+
T Consensus 292 L~L~~n~l~~-~~~-~-~~l~~L~~L~L~~n~l~~~~~--~~-----~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 359 (466)
T 1o6v_A 292 LELNENQLED-ISP-I-SNLKNLTYLTLYFNNISDISP--VS-----SLTKLQRLFFYNNKVSDV--SSLANLTNINWLS 359 (466)
T ss_dssp EECCSSCCSC-CGG-G-GGCTTCSEEECCSSCCSCCGG--GG-----GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred EEcCCCcccC-chh-h-cCCCCCCEEECcCCcCCCchh--hc-----cCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence 9999999844 443 3 368999999999999987665 22 689999999999999865 4788999999999
Q ss_pred cCCccccCCCccccCCCCCCCEEeCCCCccCcc
Q 037539 449 LSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS 481 (622)
Q Consensus 449 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 481 (622)
+++|++++..| +..+++|+.|++++|++++.
T Consensus 360 l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 99999997766 88999999999999999853
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-35 Score=312.24 Aligned_cols=347 Identities=20% Similarity=0.173 Sum_probs=230.2
Q ss_pred CEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCc
Q 037539 78 KSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMC 157 (622)
Q Consensus 78 ~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 157 (622)
+.++.+++.++.... .+++++++|++++|++++ . ....|..+++|++|+|++|.+++..|.+|.+++
T Consensus 14 ~~v~c~~~~l~~ip~------~~~~~l~~L~L~~n~l~~-~------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 80 (477)
T 2id5_A 14 RAVLCHRKRFVAVPE------GIPTETRLLDLGKNRIKT-L------NQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80 (477)
T ss_dssp TEEECCSCCCSSCCS------CCCTTCSEEECCSSCCCE-E------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CEEEeCCCCcCcCCC------CCCCCCcEEECCCCccce-E------CHhHccCCCCCCEEECCCCccCEeChhhhhCCc
Confidence 567777777765432 234778888888888875 2 223457888999999999988887888899999
Q ss_pred cCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCC
Q 037539 158 SLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKL 236 (622)
Q Consensus 158 ~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 236 (622)
+|++|++++|.+++..+.. |..+++ |++|++++|.+.+..+. |..+++|++|++++|.+++..+..|..+++|
T Consensus 81 ~L~~L~L~~n~l~~~~~~~-----~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 81 NLRTLGLRSNRLKLIPLGV-----FTGLSN-LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154 (477)
T ss_dssp TCCEEECCSSCCCSCCTTS-----STTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred cCCEEECCCCcCCccCccc-----ccCCCC-CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence 9999999999988766666 444555 99999999999887777 8899999999999999988888889999999
Q ss_pred CEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCC
Q 037539 237 ESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFD 316 (622)
Q Consensus 237 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 316 (622)
++|++++|.++ .++...+..+++|+.
T Consensus 155 ~~L~l~~n~l~---------------~~~~~~l~~l~~L~~--------------------------------------- 180 (477)
T 2id5_A 155 EQLTLEKCNLT---------------SIPTEALSHLHGLIV--------------------------------------- 180 (477)
T ss_dssp CEEEEESCCCS---------------SCCHHHHTTCTTCCE---------------------------------------
T ss_pred CEEECCCCcCc---------------ccChhHhcccCCCcE---------------------------------------
Confidence 99999988876 333333333334444
Q ss_pred CCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeec
Q 037539 317 RLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSL 396 (622)
Q Consensus 317 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L 396 (622)
|++++|.+.+..+..|..+++|++|++++|...+.++.......+|++|++++|.+ ..+|...+..+++|+.|++
T Consensus 181 ----L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L 255 (477)
T 2id5_A 181 ----LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNL 255 (477)
T ss_dssp ----EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC-CSCCHHHHTTCTTCCEEEC
T ss_pred ----EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc-cccCHHHhcCccccCeeEC
Confidence 44444444444444444555555555555544444443333444566666666665 3455444445666666666
Q ss_pred CCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCC
Q 037539 397 KSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRN 476 (622)
Q Consensus 397 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 476 (622)
++|++++..+..+. .+++|+.|+|++|++.+..|..|..+++|+.|+|++|.+++..+..|..+++|++|+|++|
T Consensus 256 s~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 256 SYNPISTIEGSMLH-----ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CSSCCCEECTTSCT-----TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CCCcCCccChhhcc-----ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 66666655444443 5666777777777777666667777777777777777777666666777777777777777
Q ss_pred ccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 477 LFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 477 ~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
++....+.. .-......+++.++...|..|.
T Consensus 331 ~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 331 PLACDCRLL-WVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CEECSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred CccCccchH-hHHhhhhccccCccCceeCCch
Confidence 776432211 1112233445566666665554
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4e-35 Score=308.80 Aligned_cols=342 Identities=17% Similarity=0.174 Sum_probs=207.4
Q ss_pred CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccc
Q 037539 49 SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKA 128 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 128 (622)
++|++|++++|.+++.+ .+..+++|++|++++|.+++. + +..+ ++|++|++++|+++++ +
T Consensus 42 ~~L~~L~Ls~n~l~~~~----~l~~l~~L~~L~Ls~n~l~~~-~----~~~l-~~L~~L~Ls~N~l~~~--~-------- 101 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT----GIEKLTGLTKLICTSNNITTL-D----LSQN-TNLTYLACDSNKLTNL--D-------- 101 (457)
T ss_dssp TTCCEEECCSSCCCCCT----TGGGCTTCSEEECCSSCCSCC-C----CTTC-TTCSEEECCSSCCSCC--C--------
T ss_pred CCCCEEEccCCCcccCh----hhcccCCCCEEEccCCcCCeE-c----cccC-CCCCEEECcCCCCcee--e--------
Confidence 55555555555555543 356667777777777766653 1 4455 6677777777776641 1
Q ss_pred cCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCC
Q 037539 129 FQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGG 208 (622)
Q Consensus 129 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~ 208 (622)
++.+++|++|++++|.+++. + ++.+++|++|++++|++++. + ++.+++ |++|++++|...+.. .+..
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~-------l~~l~~-L~~L~l~~n~~~~~~-~~~~ 168 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D-------VSHNTQ-LTELDCHLNKKITKL-DVTP 168 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C-------CTTCTT-CCEEECTTCSCCCCC-CCTT
T ss_pred cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c-------cccCCc-CCEEECCCCCccccc-cccc
Confidence 35666777777777776642 2 66667777777777766653 2 334444 777777776544333 3566
Q ss_pred CCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCccc
Q 037539 209 FSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGK 288 (622)
Q Consensus 209 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 288 (622)
+++|++|++++|.+++. + +..+++|++|++++|.+++.. ...+++|+.|++++|++.+
T Consensus 169 l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~~------------------l~~l~~L~~L~Ls~N~l~~- 226 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKLD------------------LNQNIQLTFLDCSSNKLTE- 226 (457)
T ss_dssp CTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCCC------------------CTTCTTCSEEECCSSCCSC-
T ss_pred CCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCeec------------------cccCCCCCEEECcCCcccc-
Confidence 66777777777776653 2 566667777777777665321 1122455555555555542
Q ss_pred CCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCc----------cEEeeeCCcCCCCCCc
Q 037539 289 LPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNI----------WTLNLHNNRLTGKLPS 358 (622)
Q Consensus 289 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L----------~~L~Ls~n~i~~~~~~ 358 (622)
+| +..+++|+.|++++|++++..+ ..+++| +.|++++|.+.+.+|
T Consensus 227 -------------------ip--~~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 227 -------------------ID--VTPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp -------------------CC--CTTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-
T ss_pred -------------------cC--ccccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc-
Confidence 22 3444555555555555554322 223333 344444444443333
Q ss_pred cccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHh
Q 037539 359 PLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEI 438 (622)
Q Consensus 359 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 438 (622)
+..+++|+.|++++|...+.+|. ..++|+.|+++ .+++|++|++++|++++. + +
T Consensus 282 -~~~l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L~l~------------------~~~~L~~L~L~~N~l~~l-~--l 335 (457)
T 3bz5_A 282 -AEGCRKIKELDVTHNTQLYLLDC----QAAGITELDLS------------------QNPKLVYLYLNNTELTEL-D--V 335 (457)
T ss_dssp -CTTCTTCCCCCCTTCTTCCEEEC----TTCCCSCCCCT------------------TCTTCCEEECTTCCCSCC-C--C
T ss_pred -ccccccCCEEECCCCcccceecc----CCCcceEechh------------------hcccCCEEECCCCccccc-c--c
Confidence 34556666666666655455543 23455555544 345788888888888864 2 7
Q ss_pred hcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 439 MDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 439 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
+++++|+.|++++|++++ ++.|+.|++++|.+.+. ..+..|..+++++|+++|.+|..
T Consensus 336 ~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 336 SHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp TTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 788888888888888875 35667777888888765 34456788899999999999875
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1e-34 Score=305.61 Aligned_cols=351 Identities=17% Similarity=0.127 Sum_probs=283.3
Q ss_pred ccccCcCCcEEeCCCCCCCCC------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhcccc
Q 037539 28 LEVNIERLQELVLGLGKFFET------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLS 101 (622)
Q Consensus 28 ~~~~l~~L~~L~L~~n~i~~~------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 101 (622)
.++++++|++|++++|.+++. ++|++|++++|.+++. .+..+++|++|++++|.+++. + +..+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-----~~~~l~~L~~L~Ls~N~l~~~-~----~~~l- 105 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-----DLSQNTNLTYLACDSNKLTNL-D----VTPL- 105 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSCC-C----CTTC-
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE-----ccccCCCCCEEECcCCCCcee-e----cCCC-
Confidence 345789999999999999775 8999999999999987 377899999999999999885 2 5677
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhcc
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLS 181 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 181 (622)
++|++|++++|+++++ | ++.+++|++|++++|.+++. .++.+++|++|++++|+..+..+
T Consensus 106 ~~L~~L~L~~N~l~~l--~--------~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~------- 165 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKL--D--------VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD------- 165 (457)
T ss_dssp TTCCEEECCSSCCSCC--C--------CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC-------
T ss_pred CcCCEEECCCCcCCee--c--------CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc-------
Confidence 9999999999999862 2 47889999999999999964 38899999999999996554443
Q ss_pred ccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcc
Q 037539 182 FGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGIS 261 (622)
Q Consensus 182 l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 261 (622)
++.+++ |++|++++|.+++. + ++.+++|++|++++|.+++. .+..+++|++|++++|++++
T Consensus 166 ~~~l~~-L~~L~ls~n~l~~l-~-l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~------------- 226 (457)
T 3bz5_A 166 VTPQTQ-LTTLDCSFNKITEL-D-VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE------------- 226 (457)
T ss_dssp CTTCTT-CCEEECCSSCCCCC-C-CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-------------
T ss_pred cccCCc-CCEEECCCCcccee-c-cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-------------
Confidence 555666 99999999999874 3 88999999999999999975 48899999999999999874
Q ss_pred cCCchhHHhcCCCCcEEEccCCcCcccCCCC--cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCC
Q 037539 262 DSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL--SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFL 339 (622)
Q Consensus 262 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l 339 (622)
+| ...+++|+.|++++|++.+..+.. .++.|+++.| +|+.|++++|.+.+.+| ++.+
T Consensus 227 --ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l 285 (457)
T 3bz5_A 227 --ID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGC 285 (457)
T ss_dssp --CC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTC
T ss_pred --cC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--cccc
Confidence 34 233569999999999998754432 6777776654 46678888888776665 4678
Q ss_pred CCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCC
Q 037539 340 NNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGL 419 (622)
Q Consensus 340 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~ 419 (622)
++|+.|++++|...+.+|. ..++|+.|++++| ++|++|++++|++++. + +. .+++
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~--------------~~L~~L~L~~N~l~~l-~--l~-----~l~~ 340 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDC---QAAGITELDLSQN--------------PKLVYLYLNNTELTEL-D--VS-----HNTK 340 (457)
T ss_dssp TTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC--------------TTCCEEECTTCCCSCC-C--CT-----TCTT
T ss_pred ccCCEEECCCCcccceecc---CCCcceEechhhc--------------ccCCEEECCCCccccc-c--cc-----cCCc
Confidence 9999999999987766553 3456666665544 6788999999999874 2 33 6899
Q ss_pred ccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCcccc
Q 037539 420 VRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLS 487 (622)
Q Consensus 420 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 487 (622)
|+.|++++|++++ ++.|..|++++|.+.+. ..+..|+.+++++|+++|.+|..+.
T Consensus 341 L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 341 LKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp CSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred CcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 9999999999984 35677788999988864 3456788899999999998887653
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.6e-34 Score=298.00 Aligned_cols=333 Identities=20% Similarity=0.221 Sum_probs=192.6
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhcc
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLS 181 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 181 (622)
+++++|++++|.++. +|..+ |..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+
T Consensus 45 ~~l~~l~l~~~~l~~--l~~~~-----~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---- 113 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRK--LPAAL-----LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF---- 113 (390)
T ss_dssp CCCSEEEEESCEESE--ECTHH-----HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT----
T ss_pred CCceEEEecCCchhh--CChhH-----hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh----
Confidence 566666666666652 33221 3455666666666666665555566666666666666666666555553
Q ss_pred ccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCc
Q 037539 182 FGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGI 260 (622)
Q Consensus 182 l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 260 (622)
+.+++ |++|++++|.+....+. |+.+++|++|++++|.+++..+..+..+++|++|++++|++++..
T Consensus 114 -~~l~~-L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------- 181 (390)
T 3o6n_A 114 -QNVPL-LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------- 181 (390)
T ss_dssp -TTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----------
T ss_pred -cCCCC-CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----------
Confidence 33333 66666666666644444 566666666666666666555555666666666666666654211
Q ss_pred ccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCC
Q 037539 261 SDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLN 340 (622)
Q Consensus 261 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~ 340 (622)
+..+++|+.|++++|.+++. ...+
T Consensus 182 ---------------------------------------------------~~~l~~L~~L~l~~n~l~~~-----~~~~ 205 (390)
T 3o6n_A 182 ---------------------------------------------------LSLIPSLFHANVSYNLLSTL-----AIPI 205 (390)
T ss_dssp ---------------------------------------------------GGGCTTCSEEECCSSCCSEE-----ECCS
T ss_pred ---------------------------------------------------cccccccceeeccccccccc-----CCCC
Confidence 12233344444444433321 1223
Q ss_pred CccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCc
Q 037539 341 NIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLV 420 (622)
Q Consensus 341 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 420 (622)
+|++|++++|.+... +. ...++|++|++++|.+.+ .+ .+. .+++|++|++++|.+.+..|..+. .+++|
T Consensus 206 ~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L 274 (390)
T 3o6n_A 206 AVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTD-TA-WLL-NYPGLVEVDLSYNELEKIMYHPFV-----KMQRL 274 (390)
T ss_dssp SCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCC-CG-GGG-GCTTCSEEECCSSCCCEEESGGGT-----TCSSC
T ss_pred cceEEECCCCeeeec-cc--cccccccEEECCCCCCcc-cH-HHc-CCCCccEEECCCCcCCCcChhHcc-----ccccC
Confidence 444444544444422 11 112455555555555522 21 222 455666666666666555554444 56666
Q ss_pred cEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCC
Q 037539 421 RCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500 (622)
Q Consensus 421 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 500 (622)
++|++++|++++ ++..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++.. + +..+++|++|++++|
T Consensus 275 ~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 275 ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSS
T ss_pred CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCC
Confidence 666666666663 4445566777888888888777 4566677778888888888888744 2 567788888999998
Q ss_pred cCcccCCCCCcCCccCcccccCCcCCCCCC
Q 037539 501 NLSGKIPSGTQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 501 ~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 530 (622)
++.+.... ..+..+....+.+++..|.++
T Consensus 350 ~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 350 DWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred CccchhHH-HHHHHHHhhcccccCceeccc
Confidence 88875433 244555555566666666543
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-33 Score=308.94 Aligned_cols=333 Identities=20% Similarity=0.228 Sum_probs=195.8
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhcc
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLS 181 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 181 (622)
.+++.|++++|.++. +|..+ |..+++|++|++++|.+++..+..|+.+++|++|++++|.+++..|..
T Consensus 51 ~~l~~l~l~~~~l~~--lp~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----- 118 (597)
T 3oja_B 51 NNQKIVTFKNSTMRK--LPAAL-----LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----- 118 (597)
T ss_dssp CCCSEEEESSCEESE--ECTHH-----HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-----
T ss_pred CCceEEEeeCCCCCC--cCHHH-----HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH-----
Confidence 556666666666552 33221 345566666666666666555556666666666666666666655555
Q ss_pred ccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCc
Q 037539 182 FGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGI 260 (622)
Q Consensus 182 l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 260 (622)
|+.+++ |++|+|++|.+++..+. |+.+++|++|++++|.+++..|..|..+++|++|++++|.+++.+
T Consensus 119 ~~~l~~-L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------- 187 (597)
T 3oja_B 119 FQNVPL-LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------- 187 (597)
T ss_dssp TTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----------
T ss_pred HcCCCC-CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----------
Confidence 333333 66666666666654444 566666666666666666555555666666666666666554221
Q ss_pred ccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCC
Q 037539 261 SDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLN 340 (622)
Q Consensus 261 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~ 340 (622)
+..+++|+.|++++|.+++. ...+
T Consensus 188 ---------------------------------------------------~~~l~~L~~L~l~~n~l~~l-----~~~~ 211 (597)
T 3oja_B 188 ---------------------------------------------------LSLIPSLFHANVSYNLLSTL-----AIPI 211 (597)
T ss_dssp ---------------------------------------------------GGGCTTCSEEECCSSCCSEE-----ECCT
T ss_pred ---------------------------------------------------hhhhhhhhhhhcccCccccc-----cCCc
Confidence 12233344444444433321 1223
Q ss_pred CccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCc
Q 037539 341 NIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLV 420 (622)
Q Consensus 341 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 420 (622)
+|+.|++++|.+....+. + .++|+.|++++|.+.+ . ..+. .+++|+.|++++|.+.+.+|..+. .+++|
T Consensus 212 ~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~-~-~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L 280 (597)
T 3oja_B 212 AVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD-T-AWLL-NYPGLVEVDLSYNELEKIMYHPFV-----KMQRL 280 (597)
T ss_dssp TCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC-C-GGGG-GCTTCSEEECCSSCCCEEESGGGT-----TCSSC
T ss_pred hhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC-C-hhhc-cCCCCCEEECCCCccCCCCHHHhc-----CccCC
Confidence 444444444444422111 1 1355555555555532 1 2222 456666666666666655555544 56666
Q ss_pred cEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCC
Q 037539 421 RCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500 (622)
Q Consensus 421 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 500 (622)
+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++.. +..+++|+.|++++|
T Consensus 281 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 281 ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHN 355 (597)
T ss_dssp CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSS
T ss_pred CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCC
Confidence 777777776663 4555566778888888888887 56666777888888888888887542 567788999999999
Q ss_pred cCcccCCCCCcCCccCcccccCCcCCCCCC
Q 037539 501 NLSGKIPSGTQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 501 ~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 530 (622)
++.|.++.. .+..+....+.+++..|+.+
T Consensus 356 ~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 356 DWDCNSLRA-LFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CEEHHHHHH-HTTTCCTTTBCCCCCCCCTT
T ss_pred CCCChhHHH-HHHHHhhhccccccccCCcc
Confidence 998765432 45556666677777777653
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.7e-32 Score=278.33 Aligned_cols=283 Identities=23% Similarity=0.354 Sum_probs=124.1
Q ss_pred CCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCC
Q 037539 130 QHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGF 209 (622)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l 209 (622)
..+++|++|++++|.+++. +. +..+++|++|++++|.+++. + . +..+++ |++|++++|.+.+..+ +..+
T Consensus 63 ~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~-~-~-----~~~l~~-L~~L~l~~n~i~~~~~-~~~l 131 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI-S-A-----LQNLTN-LRELYLNEDNISDISP-LANL 131 (347)
T ss_dssp GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-G-G-----GTTCTT-CSEEECTTSCCCCCGG-GTTC
T ss_pred hhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc-h-H-----HcCCCc-CCEEECcCCcccCchh-hccC
Confidence 3445555555555555432 22 45555555555555554432 1 2 223333 5555555555443222 4445
Q ss_pred CCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccC
Q 037539 210 SSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKL 289 (622)
Q Consensus 210 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 289 (622)
++|++|++++|......+ .+..+++|++|++++|.+.+. +. ...+++|+.|++++|.+.
T Consensus 132 ~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~---------------~~--~~~l~~L~~L~l~~n~l~--- 190 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV---------------TP--IANLTDLYSLSLNYNQIE--- 190 (347)
T ss_dssp TTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC---------------GG--GGGCTTCSEEECTTSCCC---
T ss_pred CceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc---------------hh--hccCCCCCEEEccCCccc---
Confidence 555555555553332222 255555555555555554421 11 112234444444444332
Q ss_pred CCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEE
Q 037539 290 PDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVL 369 (622)
Q Consensus 290 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 369 (622)
..+. +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|
T Consensus 191 -----------------~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 248 (347)
T 4fmz_A 191 -----------------DISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 248 (347)
T ss_dssp -----------------CCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred -----------------cccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEE
Confidence 1111 3444555555555555543322 4445555555555555543222 4555555555
Q ss_pred EccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeec
Q 037539 370 DLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNL 449 (622)
Q Consensus 370 ~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 449 (622)
++++|.+ ..++ .+ ..+++|++|++++|++++. + .+ ..+++|+.|++++|++++..+..+..+++|++|++
T Consensus 249 ~l~~n~l-~~~~-~~-~~l~~L~~L~l~~n~l~~~-~-~~-----~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 249 EIGTNQI-SDIN-AV-KDLTKLKMLNVGSNQISDI-S-VL-----NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp ECCSSCC-CCCG-GG-TTCTTCCEEECCSSCCCCC-G-GG-----GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred ECCCCcc-CCCh-hH-hcCCCcCEEEccCCccCCC-h-hh-----cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 5555555 2222 11 1344455555555444432 1 11 13444444444444444444444444444444444
Q ss_pred CCccccCCCccccCCCCCCCEEeCCCCcc
Q 037539 450 SRNHLTGPITPKIGELTSLDFLDLSRNLF 478 (622)
Q Consensus 450 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 478 (622)
++|++++..| +..+++|++|++++|++
T Consensus 319 ~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 319 SQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp CSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred cCCccccccC--hhhhhccceeehhhhcc
Confidence 4444443222 34444444444444443
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.5e-33 Score=286.66 Aligned_cols=306 Identities=22% Similarity=0.231 Sum_probs=170.7
Q ss_pred CCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhh
Q 037539 74 LHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFF 153 (622)
Q Consensus 74 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 153 (622)
++++++|++++|.++...+ ..+..+ ++|++|++++|.+++ .....|..+++|++|++++|.+++..|..|
T Consensus 44 l~~l~~l~l~~~~l~~l~~--~~~~~l-~~L~~L~L~~n~i~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPA--ALLDSF-RQVELLNLNDLQIEE-------IDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GCCCSEEEEESCEESEECT--HHHHHC-CCCSEEECTTSCCCE-------ECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCceEEEecCCchhhCCh--hHhccc-ccCcEEECCCCcccc-------cChhhccCCCCcCEEECCCCCCCcCCHHHh
Confidence 3556666666665554433 334455 666666666666553 111233556666666666666665555556
Q ss_pred cCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCC
Q 037539 154 GNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQ 232 (622)
Q Consensus 154 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~ 232 (622)
+++++|++|++++|.++...+.. ++.+++ |++|++++|.+.+..+. +..+++|++|++++|.+++. .+..
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~-----~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~ 184 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGI-----FHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSL 184 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTT-----TTTCTT-CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGG
T ss_pred cCCCCCCEEECCCCccCcCCHHH-----hcCCCC-CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cccc
Confidence 66666666666666666444433 233333 66666666666655554 66666666666666666543 2445
Q ss_pred CCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC--cccEEeCCCCcCccccCc
Q 037539 233 LSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL--SLRFDDLSSNLLSGGLPD 310 (622)
Q Consensus 233 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~L~~L~ls~n~l~~~~~~ 310 (622)
+++|++|++++|.+++.. ..++|+.|++++|.+....... +++.|++++|.+.+. .
T Consensus 185 l~~L~~L~l~~n~l~~~~--------------------~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~ 242 (390)
T 3o6n_A 185 IPSLFHANVSYNLLSTLA--------------------IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--A 242 (390)
T ss_dssp CTTCSEEECCSSCCSEEE--------------------CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--G
T ss_pred ccccceeecccccccccC--------------------CCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--H
Confidence 566666666666655321 1235666666666655321111 344444444444432 3
Q ss_pred cccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhccc
Q 037539 311 CWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQN 390 (622)
Q Consensus 311 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 390 (622)
.+..+++|++|++++|.+++..|..+..+++|++|++++|++++ ++..+..+++|++|++++|.+ ..+|..+. .+++
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~-~l~~ 319 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL-LHVERNQP-QFDR 319 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCC-CCCGGGHH-HHTT
T ss_pred HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcc-eecCcccc-ccCc
Confidence 45566666666666666666556666666666666666666653 344445566666666666666 44555544 4566
Q ss_pred ccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC
Q 037539 391 LIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD 431 (622)
Q Consensus 391 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 431 (622)
|++|++++|+++... +. .+++|+.|++++|++.
T Consensus 320 L~~L~L~~N~i~~~~---~~-----~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 320 LENLYLDHNSIVTLK---LS-----THHTLKNLTLSHNDWD 352 (390)
T ss_dssp CSEEECCSSCCCCCC---CC-----TTCCCSEEECCSSCEE
T ss_pred CCEEECCCCccceeC---ch-----hhccCCEEEcCCCCcc
Confidence 666666666655332 11 3455555555555554
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.1e-32 Score=275.71 Aligned_cols=306 Identities=21% Similarity=0.323 Sum_probs=190.3
Q ss_pred cCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCch
Q 037539 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPK 151 (622)
Q Consensus 72 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 151 (622)
..+++|++|++++|.+... ..+..+ ++|++|++++|++++ ++. +..+++|++|++++|.+++ + +
T Consensus 41 ~~l~~L~~L~l~~~~i~~~----~~~~~~-~~L~~L~l~~n~i~~--~~~-------~~~l~~L~~L~L~~n~i~~-~-~ 104 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI----QGIEYL-TNLEYLNLNGNQITD--ISP-------LSNLVKLTNLYIGTNKITD-I-S 104 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC----TTGGGC-TTCCEEECCSSCCCC--CGG-------GTTCTTCCEEECCSSCCCC-C-G
T ss_pred hhcccccEEEEeCCccccc----hhhhhc-CCccEEEccCCcccc--chh-------hhcCCcCCEEEccCCcccC-c-h
Confidence 3445555555555555443 124444 556666666665543 111 3455666666666665553 2 2
Q ss_pred hhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccC
Q 037539 152 FFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLS 231 (622)
Q Consensus 152 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 231 (622)
.+..+++|++|++++|.+.+..+ +..+++ |++|++++|......+.+..+++|++|++++|.+.+..+ +.
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~-------~~~l~~-L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~ 174 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISP-------LANLTK-MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IA 174 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGG-------GTTCTT-CCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GG
T ss_pred HHcCCCcCCEEECcCCcccCchh-------hccCCc-eeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hc
Confidence 45666666666666666654332 223333 666666666544444446666666666666666654332 66
Q ss_pred CCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCcc
Q 037539 232 QLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDC 311 (622)
Q Consensus 232 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~ 311 (622)
.+++|++|++++|.+++. +. ...+++|+.|++++|.+.+ . +.
T Consensus 175 ~l~~L~~L~l~~n~l~~~---------------~~--~~~l~~L~~L~l~~n~l~~-------------------~-~~- 216 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDI---------------SP--LASLTSLHYFTAYVNQITD-------------------I-TP- 216 (347)
T ss_dssp GCTTCSEEECTTSCCCCC---------------GG--GGGCTTCCEEECCSSCCCC-------------------C-GG-
T ss_pred cCCCCCEEEccCCccccc---------------cc--ccCCCccceeecccCCCCC-------------------C-ch-
Confidence 667777777777766532 22 2233566666666665541 1 11
Q ss_pred ccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccc
Q 037539 312 WLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNL 391 (622)
Q Consensus 312 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L 391 (622)
+..+++|++|++++|++++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+ ..++. + ..+++|
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l-~~~~~-~-~~l~~L 289 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQI-SDISV-L-NNLSQL 289 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC-CCCGG-G-GGCTTC
T ss_pred hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCcc-CCChh-h-cCCCCC
Confidence 5667778888888887775433 67778888888888887743 4677788888888888887 44432 2 367888
Q ss_pred cEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCcccc
Q 037539 392 IVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLT 455 (622)
Q Consensus 392 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 455 (622)
+.|++++|++++..+..+. .+++|++|++++|++++..| +..+++|++|++++|.++
T Consensus 290 ~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIG-----GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSCCCGGGHHHHH-----TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEECcCCcCCCcChhHhh-----ccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888888766665554 68888888888888886555 778888888888888775
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.3e-33 Score=278.51 Aligned_cols=219 Identities=33% Similarity=0.557 Sum_probs=176.3
Q ss_pred cCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhh
Q 037539 308 LPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGES 387 (622)
Q Consensus 308 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~ 387 (622)
+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .
T Consensus 93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~ 171 (313)
T 1ogq_A 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-S 171 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-C
T ss_pred CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-h
Confidence 344455566666666666666666666666777777777777777666777777777777777777777667777666 4
Q ss_pred cc-cccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCC
Q 037539 388 LQ-NLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELT 466 (622)
Q Consensus 388 l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 466 (622)
++ +|++|++++|++++.+|..+. .++ |+.|++++|.+++..|..+..+++|+.|++++|.+++.++. +..++
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~~~~-----~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~ 244 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPPTFA-----NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK 244 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGG-----GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT
T ss_pred hhhcCcEEECcCCeeeccCChHHh-----CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC
Confidence 55 778888888887777776665 454 88888988888888888899999999999999999866555 78899
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCCCCCCCCCCC
Q 037539 467 SLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMC 535 (622)
Q Consensus 467 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~C 535 (622)
+|++|+|++|++++.+|..+..+++|++|++++|++++.+|....+..+..+.+.+|+++|+.|.. .|
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999999999999999999999999999999999999999999888999999999999999997765 45
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.4e-32 Score=295.97 Aligned_cols=307 Identities=22% Similarity=0.214 Sum_probs=173.4
Q ss_pred CCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhh
Q 037539 74 LHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFF 153 (622)
Q Consensus 74 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 153 (622)
+++++.|++++|.+....+ ..+..+ ++|++|++++|.+++ ..| ..|+.+++|++|+|++|.+++..|..|
T Consensus 50 l~~l~~l~l~~~~l~~lp~--~~~~~l-~~L~~L~L~~n~l~~-~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPA--ALLDSF-RQVELLNLNDLQIEE-IDT------YAFAYAHTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GCCCSEEEESSCEESEECT--HHHHHC-CCCSEEECTTSCCCE-ECT------TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCceEEEeeCCCCCCcCH--HHHccC-CCCcEEECCCCCCCC-CCh------HHhcCCCCCCEEECCCCcCCCCCHHHH
Confidence 3455666666665555444 344445 566666666666553 111 123555666666666666665555556
Q ss_pred cCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCC
Q 037539 154 GNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQ 232 (622)
Q Consensus 154 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~ 232 (622)
+.+++|++|++++|.+++..+.. |+.+++ |++|++++|.+++..+. ++.+++|++|++++|.+++. .+..
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~-----~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~ 190 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGI-----FHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSL 190 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTT-----TTTCTT-CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGG
T ss_pred cCCCCCCEEEeeCCCCCCCCHHH-----hccCCC-CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhh
Confidence 66666666666666666444443 233333 66666666666655554 66666666666666666543 2344
Q ss_pred CCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC--cccEEeCCCCcCccccCc
Q 037539 233 LSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL--SLRFDDLSSNLLSGGLPD 310 (622)
Q Consensus 233 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~L~~L~ls~n~l~~~~~~ 310 (622)
+++|+.|++++|.+++.. .+++|+.|++++|.+....+.. .|+.|++++|.+.+ +.
T Consensus 191 l~~L~~L~l~~n~l~~l~--------------------~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~ 248 (597)
T 3oja_B 191 IPSLFHANVSYNLLSTLA--------------------IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TA 248 (597)
T ss_dssp CTTCSEEECCSSCCSEEE--------------------CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CG
T ss_pred hhhhhhhhcccCcccccc--------------------CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--Ch
Confidence 566666666666655321 1235666666666655322221 44444455554443 24
Q ss_pred cccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhccc
Q 037539 311 CWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQN 390 (622)
Q Consensus 311 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 390 (622)
.+..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++ +|..+..+++|++|+|++|.+ ..+|..+. .+++
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~-~l~~ 325 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL-LHVERNQP-QFDR 325 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC-CCCGGGHH-HHTT
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC-CccCcccc-cCCC
Confidence 55666667777777776666666666666667777777666663 344555566666666666666 45555554 4666
Q ss_pred ccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCc
Q 037539 391 LIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDG 432 (622)
Q Consensus 391 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 432 (622)
|++|++++|++.+... . .+++|+.|++++|++.+
T Consensus 326 L~~L~L~~N~l~~~~~---~-----~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 326 LENLYLDHNSIVTLKL---S-----THHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CSEEECCSSCCCCCCC---C-----TTCCCSEEECCSSCEEH
T ss_pred CCEEECCCCCCCCcCh---h-----hcCCCCEEEeeCCCCCC
Confidence 6666666666653321 1 35555666666665543
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.9e-34 Score=306.35 Aligned_cols=362 Identities=22% Similarity=0.150 Sum_probs=194.6
Q ss_pred CCCccccEEEeecccCCC----CCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccc----
Q 037539 130 QHMVSLKSLYLSDSELEG----GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTG---- 201 (622)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~---- 201 (622)
..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+... +.....+|++|++++|.++.
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG-LQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT-TCSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH-HhhCCCceeEEEccCCCCCHHHHH
Confidence 344445555555554442 123334444555555555555443333332211 11111025555555555442
Q ss_pred cCCC-CCCCCCCCEEEeecccCCccCcccc-----CCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCC
Q 037539 202 PIPH-LGGFSSLEAWSLDVNCLNGTIDKSL-----SQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKL 275 (622)
Q Consensus 202 ~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 275 (622)
.++. +..+++|++|++++|.+++..+..+ ...++|++|++++|++++... ..++..+.. +++|
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~----------~~l~~~l~~-~~~L 172 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC----------EPLASVLRA-KPDF 172 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH----------HHHHHHHHH-CTTC
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH----------HHHHHHHhh-CCCC
Confidence 1122 4455555555555555443222211 123445555555555442110 011222222 2355
Q ss_pred cEEEccCCcCcccCC----------CCcccEEeCCCCcCccc----cCccccCCCCCCEEEccCCcccccC-----CCcc
Q 037539 276 SYLNLSNNHFRGKLP----------DLSLRFDDLSSNLLSGG----LPDCWLHFDRLFILNLANNRLSGKI-----PDSM 336 (622)
Q Consensus 276 ~~L~l~~n~l~~~~~----------~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~i~~~~-----~~~~ 336 (622)
++|++++|.+.+..+ ...++.|++++|.+++. ++..+..+++|++|++++|++++.. +..+
T Consensus 173 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~ 252 (461)
T 1z7x_W 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred CEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh
Confidence 555555555432111 01344444555544432 4556667788888888888776532 2223
Q ss_pred CCCCCccEEeeeCCcCCCC----CCccccCCCCccEEEccCCcccccCchhHHhh----cccccEeecCCCcCcccCChh
Q 037539 337 GFLNNIWTLNLHNNRLTGK----LPSPLRNFSQLRVLDLEKNAIFGEIPTWIGES----LQNLIVLSLKSNKFHGNIPYQ 408 (622)
Q Consensus 337 ~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~----l~~L~~L~L~~n~l~~~~~~~ 408 (622)
..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+... .++|++|++++|.+++.....
T Consensus 253 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 332 (461)
T 1z7x_W 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH 332 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH
Confidence 3577888888888877743 45566667888888888887754433333322 257888888888877654333
Q ss_pred hhHhHhhhcCCccEEECCCCcCCccchHHhhc-----ccccceeecCCccccC----CCccccCCCCCCCEEeCCCCccC
Q 037539 409 FENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD-----LVGLIALNLSRNHLTG----PITPKIGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 409 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~ 479 (622)
+.. ....+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .++..+..+++|++|++++|+++
T Consensus 333 l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 333 FSS-VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHH-HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHH-HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 322 2235778888888888777655554443 5678888888888775 56667777788888888888777
Q ss_pred ccCCcccc-----CCCCCCEEECcCCcCcc
Q 037539 480 GSIPCSLS-----QLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 480 ~~~~~~l~-----~l~~L~~L~ls~N~l~~ 504 (622)
+.....+. ....|+.|++.++.+..
T Consensus 412 ~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 412 DAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHHHHHHHHhccCCcchhheeecccccCH
Confidence 54222221 23457777777776654
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=2.2e-34 Score=305.74 Aligned_cols=360 Identities=21% Similarity=0.176 Sum_probs=277.4
Q ss_pred ccccEEEeecccCCCCCchh-hcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC--CCCC
Q 037539 133 VSLKSLYLSDSELEGGIPKF-FGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH--LGGF 209 (622)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~--l~~l 209 (622)
++|++|++++|.+++..... +..+++|++|++++|.+++.....+... +..+++ |++|++++|.+.+..+. ...+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPA-LAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTT-CCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCC-cCEEeCCCCcCChHHHHHHHHHH
Confidence 57888888888887544333 7889999999999999986544343333 555566 99999999998764332 3334
Q ss_pred C----CCCEEEeecccCCc----cCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEcc
Q 037539 210 S----SLEAWSLDVNCLNG----TIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLS 281 (622)
Q Consensus 210 ~----~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 281 (622)
+ +|++|++++|.++. .++..+..+++|++|++++|.+++.... .+...+....++|++|+++
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~----------~l~~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ----------LLCEGLLDPQCRLEKLQLE 150 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH----------HHHHHHTSTTCCCCEEECT
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH----------HHHHHHhcCCCcceEEECC
Confidence 4 79999999999985 4578899999999999999998643210 1122222234579999999
Q ss_pred CCcCcccC----CC-----CcccEEeCCCCcCccccCcccc-----CCCCCCEEEccCCccccc----CCCccCCCCCcc
Q 037539 282 NNHFRGKL----PD-----LSLRFDDLSSNLLSGGLPDCWL-----HFDRLFILNLANNRLSGK----IPDSMGFLNNIW 343 (622)
Q Consensus 282 ~n~l~~~~----~~-----~~L~~L~ls~n~l~~~~~~~~~-----~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~ 343 (622)
+|++.+.. +. .+|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|+
T Consensus 151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence 99988643 21 2899999999998765444443 367999999999999864 456677889999
Q ss_pred EEeeeCCcCCCCC-----CccccCCCCccEEEccCCccccc----CchhHHhhcccccEeecCCCcCcccCChhhhHhHh
Q 037539 344 TLNLHNNRLTGKL-----PSPLRNFSQLRVLDLEKNAIFGE----IPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYK 414 (622)
Q Consensus 344 ~L~Ls~n~i~~~~-----~~~l~~l~~L~~L~L~~n~i~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 414 (622)
+|++++|.+++.. +..+..+++|++|++++|.+.+. ++..+. .+++|++|++++|.+.+..+..+.....
T Consensus 231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLL 309 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhc
Confidence 9999999987432 23334689999999999998543 455444 6899999999999998766666655444
Q ss_pred hhcCCccEEECCCCcCCcc----chHHhhcccccceeecCCccccCCCccccCC-----CCCCCEEeCCCCccCc----c
Q 037539 415 STLGLVRCLDLSSNKLDGA----IPEEIMDLVGLIALNLSRNHLTGPITPKIGE-----LTSLDFLDLSRNLFSG----S 481 (622)
Q Consensus 415 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~Ls~n~l~~----~ 481 (622)
...++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 4557999999999999865 5667788899999999999998765554443 7899999999999996 6
Q ss_pred CCccccCCCCCCEEECcCCcCccc
Q 037539 482 IPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 482 ~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
+|..+..+++|++|++++|++++.
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHhCCCccEEECCCCCCCHH
Confidence 788888999999999999999753
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.2e-30 Score=262.21 Aligned_cols=288 Identities=22% Similarity=0.231 Sum_probs=213.5
Q ss_pred ccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCC
Q 037539 157 CSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSK 235 (622)
Q Consensus 157 ~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 235 (622)
.+++.++++++.++. +|..+ . + +|++|++++|.+.+..+. |.++++|++|++++|.+++..|..|..+++
T Consensus 33 c~l~~l~~~~~~l~~-ip~~~-----~--~-~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 103 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKA-VPKEI-----S--P-DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103 (332)
T ss_dssp EETTEEECCSSCCSS-CCSCC-----C--T-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTT
T ss_pred ccCCEEECCCCCccc-cCCCC-----C--C-CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCC
Confidence 367777777777663 34331 1 2 488888888888776665 888888888888888888777888888888
Q ss_pred CCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCC
Q 037539 236 LESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHF 315 (622)
Q Consensus 236 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~ 315 (622)
|++|++++|+++ .+|..++ ++|++|++++|++. +..+..+..+
T Consensus 104 L~~L~L~~n~l~---------------~l~~~~~---~~L~~L~l~~n~i~-------------------~~~~~~~~~l 146 (332)
T 2ft3_A 104 LQKLYISKNHLV---------------EIPPNLP---SSLVELRIHDNRIR-------------------KVPKGVFSGL 146 (332)
T ss_dssp CCEEECCSSCCC---------------SCCSSCC---TTCCEEECCSSCCC-------------------CCCSGGGSSC
T ss_pred CCEEECCCCcCC---------------ccCcccc---ccCCEEECCCCccC-------------------ccCHhHhCCC
Confidence 888888888876 3333322 35666666665554 3444567788
Q ss_pred CCCCEEEccCCcccc--cCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccE
Q 037539 316 DRLFILNLANNRLSG--KIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~ 393 (622)
++|++|++++|.++. ..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+.+..+..+. .+++|++
T Consensus 147 ~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~ 221 (332)
T 2ft3_A 147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLL-RYSKLYR 221 (332)
T ss_dssp SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSST-TCTTCSC
T ss_pred ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhc-CCCCCCE
Confidence 888888888888853 566677777 88888888888874 454443 6888888988888444444444 6888899
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCC------CCC
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGE------LTS 467 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~ 467 (622)
|++++|++.+..+..+. .+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .++
T Consensus 222 L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 222 LGLGHNQIRMIENGSLS-----FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp CBCCSSCCCCCCTTGGG-----GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred EECCCCcCCcCChhHhh-----CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccccc
Confidence 99999888877666655 6888999999999888 77778888999999999999998776666654 367
Q ss_pred CCEEeCCCCccC--ccCCccccCCCCCCEEECcCCc
Q 037539 468 LDFLDLSRNLFS--GSIPCSLSQLSGLGVLDLSYNN 501 (622)
Q Consensus 468 L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~ls~N~ 501 (622)
|+.|++++|++. +..|..|..++.|+.+++++|+
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 899999999987 6677888899999999998885
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.3e-31 Score=268.44 Aligned_cols=191 Identities=25% Similarity=0.406 Sum_probs=148.3
Q ss_pred cCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCC-CccEEEccCCcccccCchhHHh
Q 037539 308 LPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFS-QLRVLDLEKNAIFGEIPTWIGE 386 (622)
Q Consensus 308 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~-~L~~L~L~~n~i~~~~~~~~~~ 386 (622)
.|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+.
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~- 195 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA- 195 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh-
Confidence 344455666667777777776666666677777777777777777666777777776 777888888777667776665
Q ss_pred hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCC
Q 037539 387 SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELT 466 (622)
Q Consensus 387 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 466 (622)
.++ |++|++++|.+.+..|..+. .+++|+.|++++|.+++..+. +..+++|++|++++|.+++.+|..+..++
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFG-----SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCC-----TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred CCc-ccEEECcCCcccCcCCHHHh-----cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc
Confidence 454 88888888888777766665 688888888888888866554 78889999999999999988999999999
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCC
Q 037539 467 SLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIP 507 (622)
Q Consensus 467 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p 507 (622)
+|++|+|++|++++.+|.. ..+++|+.+++++|+..+..|
T Consensus 269 ~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 269 FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 9999999999999888876 888999999999999555444
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.1e-30 Score=260.22 Aligned_cols=295 Identities=21% Similarity=0.244 Sum_probs=169.6
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhcc
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLS 181 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 181 (622)
.+++.++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|++++..|..
T Consensus 33 c~l~~l~~~~~~l~--~ip~~~--------~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----- 97 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK--AVPKEI--------SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA----- 97 (332)
T ss_dssp EETTEEECCSSCCS--SCCSCC--------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-----
T ss_pred ccCCEEECCCCCcc--ccCCCC--------CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH-----
Confidence 35677777777665 344322 256777777777777666666777777777777777777666666
Q ss_pred ccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcc
Q 037539 182 FGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGIS 261 (622)
Q Consensus 182 l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 261 (622)
++.+++ |++|++++|.++...+.+. ++|++|++++|.+++..+..|..+++|++|++++|.++...
T Consensus 98 ~~~l~~-L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------- 163 (332)
T 2ft3_A 98 FSPLRK-LQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG----------- 163 (332)
T ss_dssp STTCTT-CCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG-----------
T ss_pred hhCcCC-CCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC-----------
Confidence 333344 7777777777664333333 67777777777777665566777777777777777765211
Q ss_pred cCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCC
Q 037539 262 DSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNN 341 (622)
Q Consensus 262 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 341 (622)
..+..+. .+ +|+.|++++|++.+ +|..+. ++|++|++++|++++..+..+..+++
T Consensus 164 -~~~~~~~-~l-~L~~L~l~~n~l~~--------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~ 218 (332)
T 2ft3_A 164 -FEPGAFD-GL-KLNYLRISEAKLTG--------------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSK 218 (332)
T ss_dssp -SCTTSSC-SC-CCSCCBCCSSBCSS--------------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTT
T ss_pred -CCccccc-CC-ccCEEECcCCCCCc--------------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCC
Confidence 1121111 11 44555555544441 222221 46666777777776666666667777
Q ss_pred ccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhH-hhhcCCc
Q 037539 342 IWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEY-KSTLGLV 420 (622)
Q Consensus 342 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~l~~L 420 (622)
|++|++++|.+.+..+..+..+++|++|++++|.+ ..+|..+. .+++|++|++++|++++..+..+.... ....+.|
T Consensus 219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l 296 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLP-DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296 (332)
T ss_dssp CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-CBCCTTGG-GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCB
T ss_pred CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-eecChhhh-cCccCCEEECCCCCCCccChhHccccccccccccc
Confidence 77777777777666566666777777777777776 46666554 566677777776666654444332100 0012344
Q ss_pred cEEECCCCcCC--ccchHHhhcccccceeecCCc
Q 037539 421 RCLDLSSNKLD--GAIPEEIMDLVGLIALNLSRN 452 (622)
Q Consensus 421 ~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n 452 (622)
+.|++++|++. +..|..|..+++|+.+++++|
T Consensus 297 ~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cceEeecCcccccccCcccccccchhhhhhcccc
Confidence 45555555443 233344444444444444443
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.5e-29 Score=256.04 Aligned_cols=290 Identities=19% Similarity=0.193 Sum_probs=224.5
Q ss_pred CccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCC
Q 037539 156 MCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLS 234 (622)
Q Consensus 156 l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 234 (622)
..+++.++++++.++. .|..+ . + ++++|++++|.+++..+. |+.+++|++|++++|.+++..|..|..++
T Consensus 30 ~c~l~~l~~~~~~l~~-lp~~~-----~--~-~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEK-VPKDL-----P--P-DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp EEETTEEECTTSCCCS-CCCSC-----C--T-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred cCCCeEEEecCCCccc-cCccC-----C--C-CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence 4588999999998874 44332 1 2 499999999999987776 99999999999999999988888999999
Q ss_pred CCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccC
Q 037539 235 KLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLH 314 (622)
Q Consensus 235 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 314 (622)
+|++|++++|+++. +|..++ ++|++|++++|.+. +..+..+..
T Consensus 101 ~L~~L~Ls~n~l~~---------------l~~~~~---~~L~~L~l~~n~l~-------------------~~~~~~~~~ 143 (330)
T 1xku_A 101 KLERLYLSKNQLKE---------------LPEKMP---KTLQELRVHENEIT-------------------KVRKSVFNG 143 (330)
T ss_dssp TCCEEECCSSCCSB---------------CCSSCC---TTCCEEECCSSCCC-------------------BBCHHHHTT
T ss_pred CCCEEECCCCcCCc---------------cChhhc---ccccEEECCCCccc-------------------ccCHhHhcC
Confidence 99999999998873 333322 35666666665554 455566788
Q ss_pred CCCCCEEEccCCcccc--cCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhccccc
Q 037539 315 FDRLFILNLANNRLSG--KIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLI 392 (622)
Q Consensus 315 ~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~ 392 (622)
+++|++|++++|.++. ..+..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+.+..+..+. .+++|+
T Consensus 144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~-~l~~L~ 219 (330)
T 1xku_A 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLA 219 (330)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGT-TCTTCC
T ss_pred CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhc-CCCCCC
Confidence 8999999999998863 66677888899999999999887 4454443 7899999999988554455544 788899
Q ss_pred EeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCC------CC
Q 037539 393 VLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGE------LT 466 (622)
Q Consensus 393 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------l~ 466 (622)
+|++++|.+++..+..+. .+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .+
T Consensus 220 ~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 220 KLGLSFNSISAVDNGSLA-----NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp EEECCSSCCCEECTTTGG-----GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred EEECCCCcCceeChhhcc-----CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence 999999988877765555 6888999999999888 77778888899999999999988776666653 37
Q ss_pred CCCEEeCCCCccCc--cCCccccCCCCCCEEECcCCc
Q 037539 467 SLDFLDLSRNLFSG--SIPCSLSQLSGLGVLDLSYNN 501 (622)
Q Consensus 467 ~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~ls~N~ 501 (622)
.|+.|++++|++.. ..|..|..++.++.+++++|+
T Consensus 294 ~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccceEeecCcccccccCccccccccceeEEEecccC
Confidence 78899999998864 566778888889999998884
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2e-29 Score=255.06 Aligned_cols=284 Identities=21% Similarity=0.187 Sum_probs=164.4
Q ss_pred CCcEEeCCCCCCCCC-----CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEE
Q 037539 34 RLQELVLGLGKFFET-----SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETL 107 (622)
Q Consensus 34 ~L~~L~L~~n~i~~~-----~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L 107 (622)
+++.++++++.++.. +.+++|++++|.+++. +. .+.++++|++|++++|.+++..| ..+..+ ++|++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l-~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG---DFKNLKNLHTLILINNKISKISP--GAFAPL-VKLERL 105 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT---TTTTCTTCCEEECCSSCCCCBCT--TTTTTC-TTCCEE
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh---hhccCCCCCEEECCCCcCCeeCH--HHhcCC-CCCCEE
Confidence 567777777766554 5677777777777766 44 56677777777777777776656 566666 777777
Q ss_pred EccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCC--cCchhhhhcccccc
Q 037539 108 DLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSG--QYSQVIQNLSFGCV 185 (622)
Q Consensus 108 ~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~--~~~~~~~~l~l~~~ 185 (622)
++++|+++ .+|..+ .++|++|++++|.+++..+..|.++++|+.|++++|.+.. ..+.. +..+
T Consensus 106 ~Ls~n~l~--~l~~~~--------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~l 170 (330)
T 1xku_A 106 YLSKNQLK--ELPEKM--------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-----FQGM 170 (330)
T ss_dssp ECCSSCCS--BCCSSC--------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-----GGGC
T ss_pred ECCCCcCC--ccChhh--------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-----ccCC
Confidence 77777766 333322 1567777777777776666667777777777777776653 34444 3333
Q ss_pred CCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCc
Q 037539 186 VNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIP 265 (622)
Q Consensus 186 ~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~ 265 (622)
++ |++|++++|.++.....+. ++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 171 ~~-L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------- 231 (330)
T 1xku_A 171 KK-LSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV---------------- 231 (330)
T ss_dssp TT-CCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE----------------
T ss_pred CC-cCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee----------------
Confidence 33 7777777776664332222 5666666666666666566666666666666666665422
Q ss_pred hhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEE
Q 037539 266 DWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTL 345 (622)
Q Consensus 266 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 345 (622)
.+..+..+++|++|++++|+++ .+|..+..+++|++|
T Consensus 232 ------------------------------------------~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L 268 (330)
T 1xku_A 232 ------------------------------------------DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268 (330)
T ss_dssp ------------------------------------------CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEE
T ss_pred ------------------------------------------ChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEE
Confidence 1223334444555555555544 344444455555555
Q ss_pred eeeCCcCCCCCCccccC------CCCccEEEccCCcccc-cCchhHHhhcccccEeecCCCc
Q 037539 346 NLHNNRLTGKLPSPLRN------FSQLRVLDLEKNAIFG-EIPTWIGESLQNLIVLSLKSNK 400 (622)
Q Consensus 346 ~Ls~n~i~~~~~~~l~~------l~~L~~L~L~~n~i~~-~~~~~~~~~l~~L~~L~L~~n~ 400 (622)
++++|++++..+..|.. .+.|+.|++++|.+.. .++...+..+.+++.+++++|+
T Consensus 269 ~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 55555555443333322 2556666666666521 2333333355666666666653
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.3e-31 Score=290.55 Aligned_cols=387 Identities=14% Similarity=0.087 Sum_probs=238.1
Q ss_pred CCCCCCEEEccCCCCCCCCCCcchhccccCc-ccEEEccCCC-CCCCCCchhhhcccccCCCccccEEEeecccCCCC--
Q 037539 73 KLHSLKSLVLFSCALPPVNPSFIWHFNLSTS-IETLDLSDNN-LPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGG-- 148 (622)
Q Consensus 73 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~-L~~L~Ls~n~-l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-- 148 (622)
.+++|++|+|++|.+++..+ ..+....+. |++|++++|. ++. ..+. .....+++|++|++++|.+++.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~--~~l~~~~~~~L~~L~L~~~~~~~~----~~l~--~~~~~~~~L~~L~L~~~~~~~~~~ 181 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDL--DRLAKARADDLETLKLDKCSGFTT----DGLL--SIVTHCRKIKTLLMEESSFSEKDG 181 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHH--HHHHHHHGGGCCEEEEESCEEEEH----HHHH--HHHHHCTTCSEEECTTCEEECCCS
T ss_pred hCCCCCeEEeeccEecHHHH--HHHHHhccccCcEEECcCCCCcCH----HHHH--HHHhhCCCCCEEECccccccCcch
Confidence 56777777777776654433 333331133 7777777765 211 0110 1113567777777777766554
Q ss_pred --CchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCC---
Q 037539 149 --IPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLN--- 223 (622)
Q Consensus 149 --~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~--- 223 (622)
++..+..+++|++|++++|.+++.....+..+ +..+++ |++|++++|.+.+....+..+++|++|+++.....
T Consensus 182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~-~~~~~~-L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 259 (592)
T 3ogk_B 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI-ARNCRS-LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGM 259 (592)
T ss_dssp HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH-HHHCTT-CCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTC
T ss_pred hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH-HhhCCC-CcEEeccCccHHHHHHHHhhhhHHHhhcccccccccch
Confidence 22334556777777777777664433333333 344455 77777777766653322666677777777643222
Q ss_pred ccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCc
Q 037539 224 GTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNL 303 (622)
Q Consensus 224 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~ 303 (622)
...+..+..+++|+.|+++++... .+|..+. .+++|++|++++|.+.
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~~~~---------------~l~~~~~-~~~~L~~L~Ls~~~l~----------------- 306 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYMGPN---------------EMPILFP-FAAQIRKLDLLYALLE----------------- 306 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTCCTT---------------TGGGGGG-GGGGCCEEEETTCCCC-----------------
T ss_pred HHHHHHhhccccccccCccccchh---------------HHHHHHh-hcCCCcEEecCCCcCC-----------------
Confidence 223345556667777766664322 3333322 2346666666665543
Q ss_pred Cccc-cCccccCCCCCCEEEccCCcccc-cCCCccCCCCCccEEeeeC-----------CcCCCC-CCccccCCCCccEE
Q 037539 304 LSGG-LPDCWLHFDRLFILNLANNRLSG-KIPDSMGFLNNIWTLNLHN-----------NRLTGK-LPSPLRNFSQLRVL 369 (622)
Q Consensus 304 l~~~-~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~-----------n~i~~~-~~~~l~~l~~L~~L 369 (622)
+. ....+..+++|++|+++ +.+++ ..+..+..+++|++|++++ +.+++. .......+++|++|
T Consensus 307 --~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 307 --TEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp --HHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred --HHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence 22 22345778899999998 44432 2333345678899999983 445432 12224468899999
Q ss_pred EccCCcccccCchhHHhhcccccEeecC----CCcCcccCChhhhHhHhhhcCCccEEECCCCc--CCccchHHhhc-cc
Q 037539 370 DLEKNAIFGEIPTWIGESLQNLIVLSLK----SNKFHGNIPYQFENEYKSTLGLVRCLDLSSNK--LDGAIPEEIMD-LV 442 (622)
Q Consensus 370 ~L~~n~i~~~~~~~~~~~l~~L~~L~L~----~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~-l~ 442 (622)
+++.|.+.+..+..+...+++|+.|+++ .|.+++.+...-.......+++|+.|++++|. +++..+..+.. ++
T Consensus 384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~ 463 (592)
T 3ogk_B 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463 (592)
T ss_dssp EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence 9988888776666776568899999996 56666543222122223468999999997654 66655555544 88
Q ss_pred ccceeecCCccccCC-CccccCCCCCCCEEeCCCCccCcc-CCccccCCCCCCEEECcCCcCccc
Q 037539 443 GLIALNLSRNHLTGP-ITPKIGELTSLDFLDLSRNLFSGS-IPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 443 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
+|++|++++|.+++. .+..+.++++|++|+|++|.+++. ++.....+++|++|++++|+++..
T Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 899999999998753 344567889999999999998754 344456788999999999997643
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.5e-28 Score=247.45 Aligned_cols=261 Identities=20% Similarity=0.236 Sum_probs=175.9
Q ss_pred cCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchh
Q 037539 189 LEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDW 267 (622)
Q Consensus 189 L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~ 267 (622)
|++|++++|.+++..+. +.++++|++|++++|.+++..+..|.++++|++|++++|+++ .+|..
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------------~~~~~ 118 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS---------------NLSSS 118 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS---------------SCCHH
T ss_pred CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC---------------cCCHh
Confidence 66666666666555443 666666666666666666655666666677777777776665 34444
Q ss_pred HHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccC--ccccCCCCCCEEEccCC-cccccCCCccCCCCCccE
Q 037539 268 FWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLP--DCWLHFDRLFILNLANN-RLSGKIPDSMGFLNNIWT 344 (622)
Q Consensus 268 ~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~--~~~~~~~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~ 344 (622)
.+..+++|++|++++|++. .++ ..+..+++|++|++++| .+++..+..+..+++|++
T Consensus 119 ~~~~l~~L~~L~L~~n~l~--------------------~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYK--------------------TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp HHTTCTTCSEEECTTCCCS--------------------SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred HhCCCccCCEEECCCCCCc--------------------ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 3444456666666666554 222 35678889999999998 577677778889999999
Q ss_pred EeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEE
Q 037539 345 LNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLD 424 (622)
Q Consensus 345 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~ 424 (622)
|++++|.+.+..|..+..+++|++|++++|.+ +.+|...+..+++|++|++++|.+++..+..+.. ......++.++
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~~~~~~l~~l~ 255 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELST--GETNSLIKKFT 255 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------CCCCCCEEE
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCcccccccccccc--ccccchhhccc
Confidence 99999999888888999999999999999998 6777776666889999999999888655443321 11234445555
Q ss_pred CCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcc
Q 037539 425 LSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 425 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 504 (622)
++++.+.+ +.+. .+|+.+..+++|+.|++++|+++...+..|..+++|++|++++|++.|
T Consensus 256 L~~~~l~~-------------------~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 256 FRNVKITD-------------------ESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp EESCBCCH-------------------HHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccccC-------------------cchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 55444432 1111 245556667777777777777773333335777788888888888877
Q ss_pred cCC
Q 037539 505 KIP 507 (622)
Q Consensus 505 ~~p 507 (622)
.+|
T Consensus 316 ~~~ 318 (353)
T 2z80_A 316 SCP 318 (353)
T ss_dssp CHH
T ss_pred cCC
Confidence 766
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=252.37 Aligned_cols=191 Identities=23% Similarity=0.210 Sum_probs=138.6
Q ss_pred cccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhccc
Q 037539 311 CWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQN 390 (622)
Q Consensus 311 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 390 (622)
.|.++++|++|++++|++++..+..|..+++|++|++++|.+....+..|..+++|++|++++|...+.++...+..+++
T Consensus 107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 186 (440)
T 3zyj_A 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186 (440)
T ss_dssp GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence 34445555555555555554444455556666666666666654445556666666666666644335555544445666
Q ss_pred ccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCE
Q 037539 391 LIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDF 470 (622)
Q Consensus 391 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 470 (622)
|++|++++|+++.. |. + ..+++|+.|+|++|++++..|..|.++++|+.|++++|.+++..+..|.++++|+.
T Consensus 187 L~~L~L~~n~l~~~-~~-~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 187 LRYLNLAMCNLREI-PN-L-----TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259 (440)
T ss_dssp CCEEECTTSCCSSC-CC-C-----TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred cCeecCCCCcCccc-cc-c-----CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence 67777776666632 21 2 26788888999999888787888999999999999999999888889999999999
Q ss_pred EeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 471 LDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 471 L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
|+|++|++++..+..|..+++|+.|++++|++.|.+..
T Consensus 260 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp EECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred EECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 99999999988888889999999999999999988654
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=7.3e-28 Score=254.40 Aligned_cols=192 Identities=22% Similarity=0.164 Sum_probs=143.4
Q ss_pred ccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcc
Q 037539 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQ 389 (622)
Q Consensus 310 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~ 389 (622)
..|.++++|++|++++|++++..+..|..+++|++|++++|.+....+..|..+++|++|++++|...+.++...+..++
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 196 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT
T ss_pred hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC
Confidence 34455556666666666666555555666666666666666666555556666677777777664433556555555677
Q ss_pred cccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCC
Q 037539 390 NLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD 469 (622)
Q Consensus 390 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 469 (622)
+|++|++++|++++. |. +. .+++|+.|+|++|.+++..|..|.++++|+.|++++|.+++..+..|..+++|+
T Consensus 197 ~L~~L~L~~n~l~~~-~~-~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 197 NLKYLNLGMCNIKDM-PN-LT-----PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp TCCEEECTTSCCSSC-CC-CT-----TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCEEECCCCccccc-cc-cc-----ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 777777777777643 21 22 678899999999999888888999999999999999999988888899999999
Q ss_pred EEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 470 FLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 470 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
.|+|++|++++..+..+..+++|+.|++++|++.|.+..
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 999999999988888888999999999999999988654
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=4.3e-30 Score=281.70 Aligned_cols=397 Identities=14% Similarity=0.035 Sum_probs=218.0
Q ss_pred CCccEEEcCCcccCCC-CcchHhhcC-CCC-CCEEEccCCC-CCCCCCCcchh-ccccCcccEEEccCCCCCCCCCchhh
Q 037539 49 SNINTFFLNTVSVTKS-SDWFQVVAK-LHS-LKSLVLFSCA-LPPVNPSFIWH-FNLSTSIETLDLSDNNLPSSSVYPWL 123 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~-~~~~~~l~~-l~~-L~~L~Ls~n~-l~~~~~~~~~l-~~l~~~L~~L~Ls~n~l~~~~~~~~~ 123 (622)
++|++|+|++|.+++. .. .+.. +++ |++|+|++|. ++.... ..+ ..+ ++|++|+|++|.+++ ....++
T Consensus 112 ~~L~~L~L~~~~i~~~~~~---~l~~~~~~~L~~L~L~~~~~~~~~~l--~~~~~~~-~~L~~L~L~~~~~~~-~~~~~l 184 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLD---RLAKARADDLETLKLDKCSGFTTDGL--LSIVTHC-RKIKTLLMEESSFSE-KDGKWL 184 (592)
T ss_dssp TTCCEEEEESCBCCHHHHH---HHHHHHGGGCCEEEEESCEEEEHHHH--HHHHHHC-TTCSEEECTTCEEEC-CCSHHH
T ss_pred CCCCeEEeeccEecHHHHH---HHHHhccccCcEEECcCCCCcCHHHH--HHHHhhC-CCCCEEECccccccC-cchhHH
Confidence 6777777777766554 32 3333 333 7777777765 111000 111 244 777777777776654 222222
Q ss_pred hcccccCCCccccEEEeecccCCC----CCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcc
Q 037539 124 LNLKAFQHMVSLKSLYLSDSELEG----GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDF 199 (622)
Q Consensus 124 ~~~~~l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~ 199 (622)
.. .+..+++|++|++++|.+++ .++..+..+++|+.|++++|.+.+ .+..+.. +++ |++|+++++..
T Consensus 185 ~~--~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~-----~~~-L~~L~l~~~~~ 255 (592)
T 3ogk_B 185 HE--LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA-----AAN-LEEFCGGSLNE 255 (592)
T ss_dssp HH--HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH-----CTT-CCEEEECBCCC
T ss_pred HH--HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh-----hhH-HHhhccccccc
Confidence 11 12456777777777777662 223344566777777777776664 4444333 333 77777765322
Q ss_pred c---ccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCC
Q 037539 200 T---GPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKL 275 (622)
Q Consensus 200 ~---~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 275 (622)
. ..... +..+++|+.|+++++... .++..+..+++|++|++++|.+++. ....+...+++|
T Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~--------------~~~~~~~~~~~L 320 (592)
T 3ogk_B 256 DIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETE--------------DHCTLIQKCPNL 320 (592)
T ss_dssp CTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHH--------------HHHHHHTTCTTC
T ss_pred ccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHH--------------HHHHHHHhCcCC
Confidence 2 11112 566677777777765332 4555666677777777777775432 122223445677
Q ss_pred cEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccC-----------CcccccCC-CccCCCCCcc
Q 037539 276 SYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLAN-----------NRLSGKIP-DSMGFLNNIW 343 (622)
Q Consensus 276 ~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~-----------n~i~~~~~-~~~~~l~~L~ 343 (622)
+.|+++ +.+.+ +.++..+..+++|++|++++ +.+++... .....+++|+
T Consensus 321 ~~L~L~-~~~~~------------------~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 381 (592)
T 3ogk_B 321 EVLETR-NVIGD------------------RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE 381 (592)
T ss_dssp CEEEEE-GGGHH------------------HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred CEEecc-CccCH------------------HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence 777777 33221 11222334556666666662 34443211 1123456677
Q ss_pred EEeeeCCcCCCCCCccccC-CCCccEEEcc----CCccccc-----CchhHHhhcccccEeecCCCc--CcccCChhhhH
Q 037539 344 TLNLHNNRLTGKLPSPLRN-FSQLRVLDLE----KNAIFGE-----IPTWIGESLQNLIVLSLKSNK--FHGNIPYQFEN 411 (622)
Q Consensus 344 ~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~----~n~i~~~-----~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~ 411 (622)
+|+++.+.+++..+..+.. +++|++|+++ .|.+.+. ++ .+..++++|+.|++++|. +++..+..+.
T Consensus 382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~-~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~- 459 (592)
T 3ogk_B 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR-SLLIGCKKLRRFAFYLRQGGLTDLGLSYIG- 459 (592)
T ss_dssp EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH-HHHHHCTTCCEEEEECCGGGCCHHHHHHHH-
T ss_pred EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH-HHHHhCCCCCEEEEecCCCCccHHHHHHHH-
Confidence 7777666665544444443 6667777775 4444221 11 123356777777776543 4433222222
Q ss_pred hHhhhcCCccEEECCCCcCCcc-chHHhhcccccceeecCCccccCCC-ccccCCCCCCCEEeCCCCccCccCCccc-cC
Q 037539 412 EYKSTLGLVRCLDLSSNKLDGA-IPEEIMDLVGLIALNLSRNHLTGPI-TPKIGELTSLDFLDLSRNLFSGSIPCSL-SQ 488 (622)
Q Consensus 412 ~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~ 488 (622)
..+++|+.|++++|++++. ++..+..+++|++|++++|.+++.. +..+..+++|++|+|++|++++.....+ ..
T Consensus 460 ---~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~ 536 (592)
T 3ogk_B 460 ---QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMA 536 (592)
T ss_dssp ---HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGC
T ss_pred ---HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHh
Confidence 2467777777777777652 3444566777777777777765432 2334567778888888887775533333 34
Q ss_pred CCCCCEEECcCC
Q 037539 489 LSGLGVLDLSYN 500 (622)
Q Consensus 489 l~~L~~L~ls~N 500 (622)
+|.+....+..+
T Consensus 537 ~p~l~~~~~~~~ 548 (592)
T 3ogk_B 537 RPYWNIELIPSR 548 (592)
T ss_dssp CTTEEEEEECCC
T ss_pred CCCcEEEEecCc
Confidence 566655555444
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.1e-28 Score=243.54 Aligned_cols=255 Identities=24% Similarity=0.259 Sum_probs=165.1
Q ss_pred cCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhH
Q 037539 189 LEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWF 268 (622)
Q Consensus 189 L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~ 268 (622)
-+.++.+++.++.....+. ++|++|++++|.++...+..|..+++|++|++++|.++... ..+..+
T Consensus 9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------------~~~~~~ 74 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG------------CCSQSD 74 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE------------EEEHHH
T ss_pred CCEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc------------Cccccc
Confidence 4567777777664433332 57888888888887555555777888888888888775321 223333
Q ss_pred HhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCC-CccCCCCCccEEee
Q 037539 269 WDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIP-DSMGFLNNIWTLNL 347 (622)
Q Consensus 269 ~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L 347 (622)
.. +++|++|++++|.+. .++..+..+++|++|++++|++++..+ ..+..+++|++|++
T Consensus 75 ~~-~~~L~~L~Ls~n~i~--------------------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 133 (306)
T 2z66_A 75 FG-TTSLKYLDLSFNGVI--------------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133 (306)
T ss_dssp HS-CSCCCEEECCSCSEE--------------------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEEC
T ss_pred cc-ccccCEEECCCCccc--------------------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEEC
Confidence 33 245666655555544 233445556666666666666654333 34555555555555
Q ss_pred eCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcc-cCChhhhHhHhhhcCCccEEECC
Q 037539 348 HNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHG-NIPYQFENEYKSTLGLVRCLDLS 426 (622)
Q Consensus 348 s~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~l~~L~~L~L~ 426 (622)
++|.+.+..+..+..+++|++|++++|.+ .+ ..|..+. .+++|++|+++
T Consensus 134 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-------------------------~~~~~~~~~~-----~l~~L~~L~Ls 183 (306)
T 2z66_A 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSF-------------------------QENFLPDIFT-----ELRNLTFLDLS 183 (306)
T ss_dssp TTSCCEECSTTTTTTCTTCCEEECTTCEE-------------------------GGGEECSCCT-----TCTTCCEEECT
T ss_pred CCCcCCccchhhcccCcCCCEEECCCCcc-------------------------ccccchhHHh-----hCcCCCEEECC
Confidence 55555544444455555555555555544 33 2233332 46667777777
Q ss_pred CCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCC-CCCEEECcCCcCccc
Q 037539 427 SNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLS-GLGVLDLSYNNLSGK 505 (622)
Q Consensus 427 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~ls~N~l~~~ 505 (622)
+|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|++.|.
T Consensus 184 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 7777766677777788888888888888876677788888888888888888888888888884 899999999998877
Q ss_pred CCC
Q 037539 506 IPS 508 (622)
Q Consensus 506 ~p~ 508 (622)
++.
T Consensus 264 c~~ 266 (306)
T 2z66_A 264 CEH 266 (306)
T ss_dssp GGG
T ss_pred cCh
Confidence 553
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=9.5e-28 Score=239.99 Aligned_cols=276 Identities=21% Similarity=0.234 Sum_probs=198.4
Q ss_pred CcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCcc--CccccCCCCC
Q 037539 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGT--IDKSLSQLSK 235 (622)
Q Consensus 159 L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~ 235 (622)
-+.++.+++.++. +|..+ . + +|++|++++|.++...+. |+.+++|++|++++|.++.. .+..+..+++
T Consensus 9 ~~~l~c~~~~l~~-ip~~~-----~--~-~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 79 (306)
T 2z66_A 9 GTEIRCNSKGLTS-VPTGI-----P--S-SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79 (306)
T ss_dssp TTEEECCSSCCSS-CCSCC-----C--T-TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred CCEEEcCCCCccc-CCCCC-----C--C-CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccc
Confidence 3678899888875 44331 1 2 599999999999976666 89999999999999999843 3567778999
Q ss_pred CCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccC-ccccC
Q 037539 236 LESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLP-DCWLH 314 (622)
Q Consensus 236 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~ 314 (622)
|++|++++|.++. +|..+.. +++|++|++++|++.+ ..+ ..+..
T Consensus 80 L~~L~Ls~n~i~~---------------l~~~~~~-l~~L~~L~l~~n~l~~-------------------~~~~~~~~~ 124 (306)
T 2z66_A 80 LKYLDLSFNGVIT---------------MSSNFLG-LEQLEHLDFQHSNLKQ-------------------MSEFSVFLS 124 (306)
T ss_dssp CCEEECCSCSEEE---------------EEEEEET-CTTCCEEECTTSEEES-------------------STTTTTTTT
T ss_pred cCEEECCCCcccc---------------ChhhcCC-CCCCCEEECCCCcccc-------------------cccchhhhh
Confidence 9999999999873 3444333 4688888888887662 222 46788
Q ss_pred CCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCC-CCCccccCCCCccEEEccCCcccccCchhHHhhcccccE
Q 037539 315 FDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG-KLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 315 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~ 393 (622)
+++|++|++++|.+++..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+. .+++|++
T Consensus 125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~ 203 (306)
T 2z66_A 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQV 203 (306)
T ss_dssp CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCE
T ss_pred ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc-CCCCCCE
Confidence 9999999999999998888899999999999999999985 5778888889999999998888444344433 4555555
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCC-CCCEEe
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELT-SLDFLD 472 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~ 472 (622)
|++++|+++ +..+..+..+++|++|++++|.+++..+..+..++ +|++|+
T Consensus 204 L~L~~N~l~-----------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 204 LNMSHNNFF-----------------------------SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp EECTTSCCS-----------------------------BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred EECCCCccC-----------------------------ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 555555554 33334455666677777777777666666677663 777777
Q ss_pred CCCCccCccCC--ccccCCCCCCEEECcCCcCcccCCC
Q 037539 473 LSRNLFSGSIP--CSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 473 Ls~n~l~~~~~--~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
|++|++++..+ .....+...+.+.+..+.+.|..|.
T Consensus 255 L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 255 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp CTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred ccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 77777764421 1112223344455556666666554
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=244.88 Aligned_cols=214 Identities=20% Similarity=0.176 Sum_probs=133.1
Q ss_pred cccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCC-ccccCCCCccEEEccCCcccccCchhHHhhcc
Q 037539 311 CWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLP-SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQ 389 (622)
Q Consensus 311 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~ 389 (622)
.|.++++|++|++++|++++..+..+..+++|++|++++|++.+..+ ..+..+++|++|++++|...+.++...+..++
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 174 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCC
Confidence 34445555555555555554333335555555555555555553222 24555555555555555311333332223455
Q ss_pred cccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccC---CCC
Q 037539 390 NLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIG---ELT 466 (622)
Q Consensus 390 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~l~ 466 (622)
+|++|++++|.+.+..|..+. .+++|++|++++|.+.......+..+++|++|++++|.+++..+..+. ..+
T Consensus 175 ~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~ 249 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPKSLK-----SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249 (353)
T ss_dssp EEEEEEEEETTCCEECTTTTT-----TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred CCCEEECCCCCcCccCHHHHh-----ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccc
Confidence 666666666666555554444 566666666666666533333344567777777777777655444332 366
Q ss_pred CCCEEeCCCCccCc----cCCccccCCCCCCEEECcCCcCcccCCCC--CcCCccCcccccCCcCCCCCC
Q 037539 467 SLDFLDLSRNLFSG----SIPCSLSQLSGLGVLDLSYNNLSGKIPSG--TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 467 ~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~ls~N~l~~~~p~~--~~~~~l~~~~~~~n~~lc~~~ 530 (622)
.++.++++++.+++ .+|..+..+++|++|++++|+++ .+|.. ..+..++.+.+.+|++.|+|+
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 78888888888875 36778899999999999999999 66764 467888899999999999875
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.1e-27 Score=236.94 Aligned_cols=211 Identities=22% Similarity=0.175 Sum_probs=180.8
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCc-CCCCCCccccCCCCccEEEc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNR-LTGKLPSPLRNFSQLRVLDL 371 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L 371 (622)
.++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 44455555555555666778899999999999999998888899999999999999997 77666888999999999999
Q ss_pred cCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCC
Q 037539 372 EKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSR 451 (622)
Q Consensus 372 ~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 451 (622)
++|.+.+..+..+ ..+++|++|++++|++++..+..+. .+++|++|++++|++++..+..+..+++|++|++++
T Consensus 113 ~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 113 DRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFR-----DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp TTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHhc-----cCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence 9999954444444 4799999999999999876666555 789999999999999977777799999999999999
Q ss_pred ccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 452 NHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 452 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+.++..
T Consensus 187 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred CcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence 9999888999999999999999999999877778999999999999999999887654
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=242.95 Aligned_cols=250 Identities=25% Similarity=0.247 Sum_probs=209.0
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
.++.|++++|.+.+..+..|.++++|++|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 45555556666666677889999999999999999998888899999999999999999997777789999999999999
Q ss_pred CCcccccCchhHHhhcccccEeecCCCcCcccC-ChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCC
Q 037539 373 KNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNI-PYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSR 451 (622)
Q Consensus 373 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 451 (622)
+|.+ ..++...+..+++|++|++++|+..+.+ +..+. .+++|++|++++|+++ .+| .+..+++|++|+|++
T Consensus 145 ~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-----~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 145 NNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE-----GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSG 216 (440)
T ss_dssp SCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT-----TCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTT
T ss_pred CCcc-cccCHHHhhhCcccCEeCCCCCCCcceeCcchhh-----cccccCeecCCCCcCc-ccc-ccCCCcccCEEECCC
Confidence 9999 5676666668999999999996544333 33444 7999999999999998 455 588999999999999
Q ss_pred ccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcCCCCCC
Q 037539 452 NHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 452 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 530 (622)
|.+++..+..|.++++|+.|+|++|++++..+..|..+++|++|++++|+++...+.. ..+..++.+.+.+||+.|+|.
T Consensus 217 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 9999888999999999999999999999999999999999999999999999554433 356788888999999999984
Q ss_pred CC-----------------CCCCCCCCCCCCCCCCCC
Q 037539 531 LA-----------------NMCLDEESTPGPGTDDDS 550 (622)
Q Consensus 531 ~~-----------------~~C~~~~~~~~~~~~~~~ 550 (622)
.. ..|..|...+|.......
T Consensus 297 l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~ 333 (440)
T 3zyj_A 297 ILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELD 333 (440)
T ss_dssp THHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC---
T ss_pred chHHHHHHHhccccCCccccCCCChhHhcCccHhHhh
Confidence 21 358778777766554433
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2e-26 Score=243.31 Aligned_cols=249 Identities=25% Similarity=0.239 Sum_probs=210.3
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
.++.|++++|.+.+..+..|.++++|++|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 45566666666666777889999999999999999998888999999999999999999997777789999999999999
Q ss_pred CCcccccCchhHHhhcccccEeecCCCcCcccC-ChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCC
Q 037539 373 KNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNI-PYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSR 451 (622)
Q Consensus 373 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 451 (622)
+|.+ ..++...+..+++|++|++++|+..+.+ +..+. .+++|+.|++++|++++ +| .+..+++|++|+|++
T Consensus 156 ~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-----~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 156 NNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE-----GLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSG 227 (452)
T ss_dssp SCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT-----TCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTT
T ss_pred CCCc-ceeCHhHHhcCCcccEEeCCCCCCccccChhhcc-----CCCCCCEEECCCCcccc-cc-cccccccccEEECcC
Confidence 9999 6677766668999999999995544333 33444 79999999999999985 44 588999999999999
Q ss_pred ccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcCCCCCC
Q 037539 452 NHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 452 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 530 (622)
|.+++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..+.. ..+..+..+.+.+||+.|+|.
T Consensus 228 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 9999888999999999999999999999999999999999999999999998544432 346778888999999999986
Q ss_pred CC-----------------CCCCCCCCCCCCCCCCC
Q 037539 531 LA-----------------NMCLDEESTPGPGTDDD 549 (622)
Q Consensus 531 ~~-----------------~~C~~~~~~~~~~~~~~ 549 (622)
.. ..|..|...+|......
T Consensus 308 ~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~ 343 (452)
T 3zyi_A 308 ILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEV 343 (452)
T ss_dssp THHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSC
T ss_pred chHHHHHHHHhCccCCccCcEeCCchHhccchhhcc
Confidence 32 35777777766554443
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1e-26 Score=234.26 Aligned_cols=186 Identities=26% Similarity=0.288 Sum_probs=136.1
Q ss_pred CccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCcccc---------CCCCccEEEccCCccccc
Q 037539 309 PDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLR---------NFSQLRVLDLEKNAIFGE 379 (622)
Q Consensus 309 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~---------~l~~L~~L~L~~n~i~~~ 379 (622)
|..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+.+.+|..+. ++++|++|++++|.+ ..
T Consensus 120 p~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~ 197 (328)
T 4fcg_A 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RS 197 (328)
T ss_dssp CSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CC
T ss_pred hHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-Cc
Confidence 344445555555555555555 4455555555666666665555545554443 477888888888877 47
Q ss_pred CchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCc
Q 037539 380 IPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPIT 459 (622)
Q Consensus 380 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 459 (622)
+|..+. .+++|++|++++|++++. |..+. .+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|
T Consensus 198 lp~~l~-~l~~L~~L~L~~N~l~~l-~~~l~-----~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 198 LPASIA-NLQNLKSLKIRNSPLSAL-GPAIH-----HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp CCGGGG-GCTTCCEEEEESSCCCCC-CGGGG-----GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred chHhhc-CCCCCCEEEccCCCCCcC-chhhc-----cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 776655 677888888888887753 33343 67888888888888888888888888888889998888888888
Q ss_pred cccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCc
Q 037539 460 PKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 460 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
..+..+++|++|+|++|++.+.+|+.+..+++|+.+++..+.+.
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88888899999999998888888888889999998888877664
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=3.8e-29 Score=274.30 Aligned_cols=382 Identities=16% Similarity=0.076 Sum_probs=201.8
Q ss_pred cCCCCCCEEEccCCCCCCCCCCcchhc-cccCcccEEEccCC-CCCCCCCchhhhcccccCCCccccEEEeecccCCCCC
Q 037539 72 AKLHSLKSLVLFSCALPPVNPSFIWHF-NLSTSIETLDLSDN-NLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGI 149 (622)
Q Consensus 72 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~-~l~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 149 (622)
..+++|++|+|++|.+++..+ ..+. .+ ++|++|++++| .++...++. .+..+++|++|++++|.+++..
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~--~~l~~~~-~~L~~L~L~~~~~~~~~~l~~------~~~~~~~L~~L~L~~~~i~~~~ 172 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCL--ELIAKSF-KNFKVLVLSSCEGFSTDGLAA------IAATCRNLKELDLRESDVDDVS 172 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHH--HHHHHHC-TTCCEEEEESCEEEEHHHHHH------HHHHCTTCCEEECTTCEEECCC
T ss_pred HhCCCCCeEEeeCcEEcHHHH--HHHHHhC-CCCcEEeCCCcCCCCHHHHHH------HHHhCCCCCEEeCcCCccCCcc
Confidence 345666666666666554333 3333 34 66666666666 332200111 1134566666666666655444
Q ss_pred chhhc----CCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeeccc---
Q 037539 150 PKFFG----NMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNC--- 221 (622)
Q Consensus 150 ~~~l~----~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~--- 221 (622)
+..+. .+++|+.|++++|. .......+..+ ...+++ |++|++++|...+..+. +..+++|++|+++.+.
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l-~~~~~~-L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 249 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERL-VTRCPN-LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEV 249 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHH-HHHCTT-CCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCC
T ss_pred hHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHH-HHhCCC-CcEEecCCCCcHHHHHHHHhcCCcceEcccccccCcc
Confidence 33332 44566666666654 21222222222 223344 66666666522112333 4555666666643332
Q ss_pred ----CCccCccccCCCCCCCEE-EccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccE
Q 037539 222 ----LNGTIDKSLSQLSKLESL-SLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRF 296 (622)
Q Consensus 222 ----l~~~~~~~l~~l~~L~~L-~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~ 296 (622)
+.+ ++..+.++++|+.| .+.+... +.++..+. .+++|++|++++|.+.
T Consensus 250 ~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~---------------~~l~~~~~-~~~~L~~L~L~~~~l~---------- 302 (594)
T 2p1m_B 250 RPDVYSG-LSVALSGCKELRCLSGFWDAVP---------------AYLPAVYS-VCSRLTTLNLSYATVQ---------- 302 (594)
T ss_dssp CHHHHHH-HHHHHHTCTTCCEEECCBTCCG---------------GGGGGGHH-HHTTCCEEECTTCCCC----------
T ss_pred chhhHHH-HHHHHhcCCCcccccCCcccch---------------hhHHHHHH-hhCCCCEEEccCCCCC----------
Confidence 222 22245555666665 2222111 12222222 2245666666555533
Q ss_pred EeCCCCcCccc-cCccccCCCCCCEEEccCCcccccC-CCccCCCCCccEEeeeC---------CcCCCCCCccc-cCCC
Q 037539 297 DDLSSNLLSGG-LPDCWLHFDRLFILNLANNRLSGKI-PDSMGFLNNIWTLNLHN---------NRLTGKLPSPL-RNFS 364 (622)
Q Consensus 297 L~ls~n~l~~~-~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~---------n~i~~~~~~~l-~~l~ 364 (622)
+. ....+..+++|++|++++| +++.. +.....+++|++|++++ +.+++.....+ ..++
T Consensus 303 ---------~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~ 372 (594)
T 2p1m_B 303 ---------SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372 (594)
T ss_dssp ---------HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCT
T ss_pred ---------HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhch
Confidence 21 2223456777888888777 43221 12223467788887744 23332211122 2467
Q ss_pred CccEEEccCCcccccCchhHHhhcccccEeecC--C----CcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHh
Q 037539 365 QLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLK--S----NKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEI 438 (622)
Q Consensus 365 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~--~----n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 438 (622)
+|++|++..|.+.+.....+...+++|+.|+++ + +.+++.....-.......+++|+.|++++ .+++..+..+
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l 451 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI 451 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence 788887777777555555555457788888887 3 34442221111112233677888888876 6665555555
Q ss_pred hc-ccccceeecCCccccCCCcccc-CCCCCCCEEeCCCCccCccCCc-cccCCCCCCEEECcCCcCc
Q 037539 439 MD-LVGLIALNLSRNHLTGPITPKI-GELTSLDFLDLSRNLFSGSIPC-SLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 439 ~~-l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~N~l~ 503 (622)
.. +++|+.|++++|.+++..+..+ ..+++|++|+|++|++++..+. ....+++|++|++++|+++
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 54 7778888888888765544444 5578888888888887544333 3345778888888888774
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.7e-26 Score=226.90 Aligned_cols=204 Identities=24% Similarity=0.230 Sum_probs=96.1
Q ss_pred ccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCc-ccccCCC-CCCCC
Q 037539 133 VSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWND-FTGPIPH-LGGFS 210 (622)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~-~~~~~~~-l~~l~ 210 (622)
++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+ ..+++ |++|++++|. +....+. +..++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~-L~~L~l~~n~~l~~~~~~~~~~l~ 105 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF-----TGLAL-LEQLDLSDNAQLRSVDPATFHGLG 105 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT-----TTCTT-CCEEECCSCTTCCCCCTTTTTTCT
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhc-----CCccC-CCEEeCCCCCCccccCHHHhcCCc
Confidence 455555555555554444455555555555555555554444442 22223 5555555554 4433333 55555
Q ss_pred CCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCC
Q 037539 211 SLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLP 290 (622)
Q Consensus 211 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 290 (622)
+|++|++++|.+++..+..+..+++|++|++++|++++ ++...+..+++|++|++++|++.
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~l~~n~l~---- 166 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA---------------LPDDTFRDLGNLTHLFLHGNRIS---- 166 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTTTTCTTCCEEECCSSCCC----
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc---------------cCHhHhccCCCccEEECCCCccc----
Confidence 55555555555555445555555555555555555441 11111111122333333322222
Q ss_pred CCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEE
Q 037539 291 DLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLD 370 (622)
Q Consensus 291 ~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 370 (622)
+..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 167 ---------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 167 ---------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp ---------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred ---------------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence 11122334444555555555555544444555555555555555555543334444555555555
Q ss_pred ccCCcc
Q 037539 371 LEKNAI 376 (622)
Q Consensus 371 L~~n~i 376 (622)
+++|.+
T Consensus 232 l~~N~~ 237 (285)
T 1ozn_A 232 LNDNPW 237 (285)
T ss_dssp CCSSCE
T ss_pred ccCCCc
Confidence 555554
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.4e-26 Score=230.34 Aligned_cols=233 Identities=21% Similarity=0.226 Sum_probs=156.9
Q ss_pred CcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchh
Q 037539 188 SLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDW 267 (622)
Q Consensus 188 ~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~ 267 (622)
.+++|++++|.+....+.+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~---------------~lp~~ 145 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR---------------ALPAS 145 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC---------------CCCGG
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc---------------cCcHH
Confidence 388999999888844444778888899999888888 67778888888888888888876 45555
Q ss_pred HHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEee
Q 037539 268 FWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNL 347 (622)
Q Consensus 268 ~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 347 (622)
+... ++|++|++++|++.+.+|. .+.. . ..+..+..+++|++|++
T Consensus 146 l~~l-~~L~~L~L~~n~~~~~~p~-------------------~~~~------~---------~~~~~~~~l~~L~~L~L 190 (328)
T 4fcg_A 146 IASL-NRLRELSIRACPELTELPE-------------------PLAS------T---------DASGEHQGLVNLQSLRL 190 (328)
T ss_dssp GGGC-TTCCEEEEEEETTCCCCCS-------------------CSEE------E---------C-CCCEEESTTCCEEEE
T ss_pred HhcC-cCCCEEECCCCCCccccCh-------------------hHhh------c---------cchhhhccCCCCCEEEC
Confidence 4443 4677777766655544432 1110 0 00111233566666666
Q ss_pred eCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCC
Q 037539 348 HNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSS 427 (622)
Q Consensus 348 s~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 427 (622)
++|.++ .+|..+..+++|++|++++|.+ ..+|..+. .+++|++|++++|++.+.+|..+. .+++|+.|++++
T Consensus 191 ~~n~l~-~lp~~l~~l~~L~~L~L~~N~l-~~l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~-----~l~~L~~L~L~~ 262 (328)
T 4fcg_A 191 EWTGIR-SLPASIANLQNLKSLKIRNSPL-SALGPAIH-HLPKLEELDLRGCTALRNYPPIFG-----GRAPLKRLILKD 262 (328)
T ss_dssp EEECCC-CCCGGGGGCTTCCEEEEESSCC-CCCCGGGG-GCTTCCEEECTTCTTCCBCCCCTT-----CCCCCCEEECTT
T ss_pred cCCCcC-cchHhhcCCCCCCEEEccCCCC-CcCchhhc-cCCCCCEEECcCCcchhhhHHHhc-----CCCCCCEEECCC
Confidence 666665 5555566666666666666666 34554443 566666666666666666665554 577777777777
Q ss_pred CcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccC
Q 037539 428 NKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 428 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 479 (622)
|.+.+.+|..+.++++|++|+|++|++.+.+|+.++.+++|+.+++..+.+.
T Consensus 263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 7777777777778888888888888877788888888888888887776554
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.8e-28 Score=242.52 Aligned_cols=180 Identities=24% Similarity=0.179 Sum_probs=132.3
Q ss_pred CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEee
Q 037539 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 395 (622)
++|++|++++|++++..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+...+++|++|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 46666666666666544332 466778888888877666667777888888888888875555555544578888888
Q ss_pred cCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCC
Q 037539 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR 475 (622)
Q Consensus 396 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 475 (622)
+++|.+++..+.. .+++|++|++++|++++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++
T Consensus 176 L~~N~l~~~~~~~-------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 176 LQYNFIYDVKGQV-------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp CTTSCCCEEECCC-------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred CCCCcCccccccc-------ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccC
Confidence 8888887552221 37788888888888884 4445888889999999999888 5677788889999999999
Q ss_pred CccC-ccCCccccCCCCCCEEECcCC-cCcccCC
Q 037539 476 NLFS-GSIPCSLSQLSGLGVLDLSYN-NLSGKIP 507 (622)
Q Consensus 476 n~l~-~~~~~~l~~l~~L~~L~ls~N-~l~~~~p 507 (622)
|++. +..|..+..++.|+.+++++| .+.+..|
T Consensus 247 N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 9988 677788888888888888744 3444444
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=5e-27 Score=235.11 Aligned_cols=262 Identities=20% Similarity=0.179 Sum_probs=176.9
Q ss_pred hcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhh-cccccCCCccccEEEeecccCCCCC
Q 037539 71 VAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLL-NLKAFQHMVSLKSLYLSDSELEGGI 149 (622)
Q Consensus 71 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~ 149 (622)
+...++|++|++++|.+ ..| ..+... |++|++++|.++...+|..+. ..-.+..+++|++|++++|.+++..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p--~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 111 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADL--GQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA 111 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCC--HHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred EccCCCceeEeeccccc--ccH--HHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence 45567788899999988 455 444443 888899999886545655441 1112225789999999999998888
Q ss_pred chhh--cCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCcc-
Q 037539 150 PKFF--GNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGT- 225 (622)
Q Consensus 150 ~~~l--~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~- 225 (622)
|..+ ..+++|++|++++|++++. |..+..+.....+ +|++|++++|.+.+..+. ++.+++|++|++++|.+.+.
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 189 (312)
T 1wwl_A 112 PPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKP-GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189 (312)
T ss_dssp CCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCT-TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred HHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcC-CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch
Confidence 8876 8899999999999999877 7765554111113 499999999998877766 88888999999998887654
Q ss_pred -Ccccc--CCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCC
Q 037539 226 -IDKSL--SQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSN 302 (622)
Q Consensus 226 -~~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n 302 (622)
.+..+ ..+++|++|++++|++++.. .++..++..+++|++|++++|++.+..|
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------ 245 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAGMETPS------------GVCSALAAARVQLQGLDLSHNSLRDAAG------------ 245 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSCCCCHH------------HHHHHHHHTTCCCSEEECTTSCCCSSCC------------
T ss_pred HHHHHHHhccCCCCCEEECCCCcCcchH------------HHHHHHHhcCCCCCEEECCCCcCCcccc------------
Confidence 23334 77888888888888876432 3344444455667777776666653221
Q ss_pred cCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcc
Q 037539 303 LLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAI 376 (622)
Q Consensus 303 ~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i 376 (622)
...+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++
T Consensus 246 ------~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 246 ------APSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp ------CSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred ------hhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence 123344566777777777666 4454443 5666666666666643 43 66666666666666665
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=3.4e-29 Score=274.73 Aligned_cols=420 Identities=16% Similarity=0.098 Sum_probs=264.9
Q ss_pred ccCcCCcEEeCCCCCCC-----------------------CCCCccEEEcCCcccCCC-CcchHhhc-CCCCCCEEEccC
Q 037539 30 VNIERLQELVLGLGKFF-----------------------ETSNINTFFLNTVSVTKS-SDWFQVVA-KLHSLKSLVLFS 84 (622)
Q Consensus 30 ~~l~~L~~L~L~~n~i~-----------------------~~~~L~~L~Ls~n~l~~~-~~~~~~l~-~l~~L~~L~Ls~ 84 (622)
.++++|++|+++++... ..++|++|++++|.+++. .. .+. .+++|++|+|++
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~---~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE---LIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH---HHHHHCTTCCEEEEES
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH---HHHHhCCCCcEEeCCC
Confidence 36788999999886421 127899999999987766 33 443 688999999998
Q ss_pred C-CCCCCCCCcchhc-cccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeeccc--CCCC-CchhhcCCccC
Q 037539 85 C-ALPPVNPSFIWHF-NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSE--LEGG-IPKFFGNMCSL 159 (622)
Q Consensus 85 n-~l~~~~~~~~~l~-~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L 159 (622)
| .++.... ..+. .+ ++|++|++++|.+++ ..+.++.. ....+++|++|++++|. ++.. .+..+..+++|
T Consensus 140 ~~~~~~~~l--~~~~~~~-~~L~~L~L~~~~i~~-~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L 213 (594)
T 2p1m_B 140 CEGFSTDGL--AAIAATC-RNLKELDLRESDVDD-VSGHWLSH--FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213 (594)
T ss_dssp CEEEEHHHH--HHHHHHC-TTCCEEECTTCEEEC-CCGGGGGG--SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTC
T ss_pred cCCCCHHHH--HHHHHhC-CCCCEEeCcCCccCC-cchHHHHH--HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCC
Confidence 8 4443211 2333 56 899999999998876 44443322 22477899999999886 2211 11223456899
Q ss_pred cEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCc-------ccccCCCCCCCCCCCEE-EeecccCCccCccccC
Q 037539 160 KKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWND-------FTGPIPHLGGFSSLEAW-SLDVNCLNGTIDKSLS 231 (622)
Q Consensus 160 ~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~-------~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~l~ 231 (622)
++|++++|...+..+.. +..+++ |++|+++.+. +.+..+.+.++++|+.| .+.+... +.++..+.
T Consensus 214 ~~L~L~~~~~~~~l~~~-----~~~~~~-L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~ 286 (594)
T 2p1m_B 214 KSLKLNRAVPLEKLATL-----LQRAPQ-LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYS 286 (594)
T ss_dssp CEEECCTTSCHHHHHHH-----HHHCTT-CSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHH
T ss_pred cEEecCCCCcHHHHHHH-----HhcCCc-ceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHH
Confidence 99999988332234555 344445 9999966553 23322236778888888 3433322 23444444
Q ss_pred CCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCcc
Q 037539 232 QLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDC 311 (622)
Q Consensus 232 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~ 311 (622)
.+++|++|++++|.+++. ....+...+++|+.|++++| +.. ..++..
T Consensus 287 ~~~~L~~L~L~~~~l~~~--------------~l~~~~~~~~~L~~L~l~~~-~~~------------------~~l~~l 333 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSY--------------DLVKLLCQCPKLQRLWVLDY-IED------------------AGLEVL 333 (594)
T ss_dssp HHTTCCEEECTTCCCCHH--------------HHHHHHTTCTTCCEEEEEGG-GHH------------------HHHHHH
T ss_pred hhCCCCEEEccCCCCCHH--------------HHHHHHhcCCCcCEEeCcCc-cCH------------------HHHHHH
Confidence 678899999999886532 12233345578888888876 321 011222
Q ss_pred ccCCCCCCEEEccC---------CcccccCCCccC-CCCCccEEeeeCCcCCCCCCcccc-CCCCccEEEcc--C----C
Q 037539 312 WLHFDRLFILNLAN---------NRLSGKIPDSMG-FLNNIWTLNLHNNRLTGKLPSPLR-NFSQLRVLDLE--K----N 374 (622)
Q Consensus 312 ~~~~~~L~~L~L~~---------n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~--~----n 374 (622)
...+++|++|++.+ +.+++.....+. .+++|++|.++.+.+++.....+. .+++|++|+++ + +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 23467777777733 344433222222 367788887777777654444443 47888888888 3 3
Q ss_pred cccccCch-----hHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHh-hcccccceee
Q 037539 375 AIFGEIPT-----WIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEI-MDLVGLIALN 448 (622)
Q Consensus 375 ~i~~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 448 (622)
.+ +..|. .+...+++|+.|++++ .+++..+..+. ..+++|+.|++++|.+++..+..+ ..+++|++|+
T Consensus 414 ~l-~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~----~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 414 YL-TLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG----TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487 (594)
T ss_dssp TT-TCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH----HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred cc-cCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH----HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence 44 32221 2234678888888876 55543333332 147889999999888876655555 6688899999
Q ss_pred cCCccccCCCcc-ccCCCCCCCEEeCCCCccCccCCccc-cCCCCCCEEECcCCcCcc
Q 037539 449 LSRNHLTGPITP-KIGELTSLDFLDLSRNLFSGSIPCSL-SQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 449 L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~ls~N~l~~ 504 (622)
+++|.+++..+. ....+++|+.|++++|+++......+ ..+|.|+...+..+....
T Consensus 488 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~ 545 (594)
T 2p1m_B 488 IRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD 545 (594)
T ss_dssp EESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGG
T ss_pred CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccc
Confidence 999988654443 34457889999999998865444444 566777776666655443
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.3e-24 Score=235.36 Aligned_cols=263 Identities=25% Similarity=0.267 Sum_probs=181.9
Q ss_pred ccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCC
Q 037539 157 CSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKL 236 (622)
Q Consensus 157 ~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 236 (622)
.+++.|++++|.++ .+|..+ . + +|++|++++|.++.. |. .+++|++|++++|.+++ +|. .+++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l-----~--~-~L~~L~L~~N~l~~l-p~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L 103 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCL-----P--A-HITTLVIPDNNLTSL-PA--LPPELRTLEVSGNQLTS-LPV---LPPGL 103 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCC-----C--T-TCSEEEECSCCCSCC-CC--CCTTCCEEEECSCCCSC-CCC---CCTTC
T ss_pred CCCcEEEecCCCcC-ccChhh-----C--C-CCcEEEecCCCCCCC-CC--cCCCCCEEEcCCCcCCc-CCC---CCCCC
Confidence 35788888888887 444432 1 2 488888888887743 33 46788888888888774 343 56788
Q ss_pred CEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCC
Q 037539 237 ESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFD 316 (622)
Q Consensus 237 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 316 (622)
++|++++|.+++ +|. .+++|+.|++++|++++ +|. .++
T Consensus 104 ~~L~Ls~N~l~~---------------l~~----~l~~L~~L~L~~N~l~~--------------------lp~---~l~ 141 (622)
T 3g06_A 104 LELSIFSNPLTH---------------LPA----LPSGLCKLWIFGNQLTS--------------------LPV---LPP 141 (622)
T ss_dssp CEEEECSCCCCC---------------CCC----CCTTCCEEECCSSCCSC--------------------CCC---CCT
T ss_pred CEEECcCCcCCC---------------CCC----CCCCcCEEECCCCCCCc--------------------CCC---CCC
Confidence 888888887763 233 23567777777776652 222 236
Q ss_pred CCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeec
Q 037539 317 RLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSL 396 (622)
Q Consensus 317 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L 396 (622)
+|++|++++|++++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+ ..+|.. +++|+.|++
T Consensus 142 ~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l-~~l~~~----~~~L~~L~L 208 (622)
T 3g06_A 142 GLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQL-ASLPTL----PSELYKLWA 208 (622)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCC-SCCCCC----CTTCCEEEC
T ss_pred CCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCC-CCCCCc----cchhhEEEC
Confidence 77778888777774 332 24677788888887774 44 4457788888888877 445542 467888888
Q ss_pred CCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCC
Q 037539 397 KSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRN 476 (622)
Q Consensus 397 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 476 (622)
++|.++.... .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|. .+++|+.|+|++|
T Consensus 209 ~~N~l~~l~~---------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N 271 (622)
T 3g06_A 209 YNNRLTSLPA---------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRN 271 (622)
T ss_dssp CSSCCSSCCC---------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred cCCcccccCC---------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCC
Confidence 8887774322 34678888888888874 44 456788888888888873 444 5678888888888
Q ss_pred ccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 477 LFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 477 ~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
+++ .+|..+..+++|+.|++++|++++..|.
T Consensus 272 ~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 888 6677788888888888888888876553
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=6e-25 Score=237.96 Aligned_cols=268 Identities=25% Similarity=0.293 Sum_probs=152.9
Q ss_pred cccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCC
Q 037539 134 SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLE 213 (622)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~ 213 (622)
+++.|++++|.++ .+|..+. ++|+.|++++|.++.. |.. ++ +|++|+|++|.+++. |. .+++|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~l-p~~--------l~-~L~~L~Ls~N~l~~l-p~--~l~~L~ 104 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PAL--------PP-ELRTLEVSGNQLTSL-PV--LPPGLL 104 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCC-CCC--------CT-TCCEEEECSCCCSCC-CC--CCTTCC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCC-CCc--------CC-CCCEEEcCCCcCCcC-CC--CCCCCC
Confidence 3455555555554 3343332 4555555555555432 211 11 355555555555432 22 445566
Q ss_pred EEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCc
Q 037539 214 AWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLS 293 (622)
Q Consensus 214 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 293 (622)
+|++++|.+++. |. .+++|++|++++|+++. +|.. +++|++|++++|++.+
T Consensus 105 ~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~---------------lp~~----l~~L~~L~Ls~N~l~~------ 155 (622)
T 3g06_A 105 ELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS---------------LPVL----PPGLQELSVSDNQLAS------ 155 (622)
T ss_dssp EEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC---------------CCCC----CTTCCEEECCSSCCSC------
T ss_pred EEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc---------------CCCC----CCCCCEEECcCCcCCC------
Confidence 666666655532 22 34566666666666652 2221 1456666666665542
Q ss_pred ccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccC
Q 037539 294 LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEK 373 (622)
Q Consensus 294 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 373 (622)
+|. .+++|+.|++++|++++ +| ..+++|+.|++++|.+++ +|. ..++|+.|++++
T Consensus 156 --------------l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~ 210 (622)
T 3g06_A 156 --------------LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYN 210 (622)
T ss_dssp --------------CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred --------------cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcC
Confidence 111 12355666666666653 23 234566666666666653 332 235666677777
Q ss_pred CcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCcc
Q 037539 374 NAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNH 453 (622)
Q Consensus 374 n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 453 (622)
|.+ ..+|. .+++|+.|++++|++++ +| . .+++|+.|++++|.++ .+|. .+++|+.|+|++|.
T Consensus 211 N~l-~~l~~----~~~~L~~L~Ls~N~L~~-lp---~-----~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 211 NRL-TSLPA----LPSGLKELIVSGNRLTS-LP---V-----LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp SCC-SSCCC----CCTTCCEEECCSSCCSC-CC---C-----CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC
T ss_pred Ccc-cccCC----CCCCCCEEEccCCccCc-CC---C-----CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCC
Confidence 666 44543 24567777777777664 22 1 4567777777777777 3443 56778888888888
Q ss_pred ccCCCccccCCCCCCCEEeCCCCccCccCCccccCCC
Q 037539 454 LTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLS 490 (622)
Q Consensus 454 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 490 (622)
++ .+|..+..+++|+.|+|++|++++..|..+..++
T Consensus 273 L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 273 LT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 87 5677788888888888888888877777665544
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=5.9e-27 Score=234.62 Aligned_cols=254 Identities=23% Similarity=0.240 Sum_probs=131.1
Q ss_pred hcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccc-cCCC-CC-------CCCCCCEEEeecccCC
Q 037539 153 FGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTG-PIPH-LG-------GFSSLEAWSLDVNCLN 223 (622)
Q Consensus 153 l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~-~~~~-l~-------~l~~L~~L~L~~n~l~ 223 (622)
++..++|+.|++++|.+ ..|..+.. .|++|++++|.+.. ..+. +. ++++|++|++++|.++
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~--------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 108 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD--------IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH--------HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB
T ss_pred EccCCCceeEeeccccc--ccHHHHHH--------HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc
Confidence 44556677777777766 44544322 26666666666632 2332 22 4667777777777777
Q ss_pred ccCcccc--CCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCC
Q 037539 224 GTIDKSL--SQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSS 301 (622)
Q Consensus 224 ~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~ 301 (622)
+..|..+ ..+++|++|++++|++++ +|..+....
T Consensus 109 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~l~----------------------------- 144 (312)
T 1wwl_A 109 GTAPPPLLEATGPDLNILNLRNVSWAT---------------RDAWLAELQ----------------------------- 144 (312)
T ss_dssp SCCCCCSSSCCSCCCSEEEEESCBCSS---------------SSSHHHHHH-----------------------------
T ss_pred chhHHHHHHhcCCCccEEEccCCCCcc---------------hhHHHHHHH-----------------------------
Confidence 6666655 667777777777776652 132222210
Q ss_pred CcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCC--CCccc--cCCCCccEEEccCCccc
Q 037539 302 NLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGK--LPSPL--RNFSQLRVLDLEKNAIF 377 (622)
Q Consensus 302 n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~l--~~l~~L~~L~L~~n~i~ 377 (622)
...+++|++|++++|++++..+..++.+++|++|++++|++.+. .+..+ ..+++|++|++++|.+.
T Consensus 145 ----------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 145 ----------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp ----------TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred ----------HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 00113455555555555544445555555555555555554422 11122 45556666666666552
Q ss_pred c--cCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCcccc
Q 037539 378 G--EIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLT 455 (622)
Q Consensus 378 ~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 455 (622)
+ .++..++..+++|++|++++|++++.+|. ..+..+++|++|++++|.++
T Consensus 215 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------------------------~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGA----------------------------PSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp CHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC----------------------------SCCCCCTTCCEEECTTSCCS
T ss_pred chHHHHHHHHhcCCCCCEEECCCCcCCcccch----------------------------hhhhhcCCCCEEECCCCccC
Confidence 1 22223333345555555555555443321 22333455555555555555
Q ss_pred CCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCc
Q 037539 456 GPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 456 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
.+|..+. ++|++|+|++|++++. |. +..+++|++|++++|+++
T Consensus 267 -~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 267 -QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred -hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 3444433 5556666666665543 43 555566666666666655
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3e-26 Score=243.34 Aligned_cols=171 Identities=25% Similarity=0.168 Sum_probs=113.1
Q ss_pred CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEee
Q 037539 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 395 (622)
++|+.|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+.+..|..+...+++|++|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 3555666666665544333 2456777777777777666667777777777777777776656665554567777777
Q ss_pred cCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCC
Q 037539 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR 475 (622)
Q Consensus 396 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 475 (622)
+++|.+++..+.. .+++|+.|+|++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++
T Consensus 176 Ls~N~l~~~~~~~-------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 176 LQYNFIYDVKGQV-------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp CTTSCCCEEECCC-------CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTT
T ss_pred cCCCccccccccc-------cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCC
Confidence 7777776553221 36777777777777774433 47777777777777777773 566677777777777777
Q ss_pred CccC-ccCCccccCCCCCCEEECc
Q 037539 476 NLFS-GSIPCSLSQLSGLGVLDLS 498 (622)
Q Consensus 476 n~l~-~~~~~~l~~l~~L~~L~ls 498 (622)
|++. +.+|..+..++.|+.++++
T Consensus 247 N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 247 NGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcCcchHHHHHhCCCCcEEecc
Confidence 7776 4555666666666666554
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.5e-26 Score=232.17 Aligned_cols=260 Identities=20% Similarity=0.159 Sum_probs=153.4
Q ss_pred cccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCC
Q 037539 134 SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLE 213 (622)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~ 213 (622)
.++..+++.+.+.......+..+++|++|++++|.+++..|..+..+ ++ |++|++++|.+++..+ +..+++|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~-L~~L~Ls~n~l~~~~~-~~~l~~L~ 83 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF-----TK-LELLNLSSNVLYETLD-LESLSTLR 83 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC-----TT-CCEEECTTSCCEEEEE-ETTCTTCC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCC-----Cc-CCEEECCCCcCCcchh-hhhcCCCC
Confidence 45555666665554444455566677777777777776666664333 33 7777777777665443 66666666
Q ss_pred EEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCc
Q 037539 214 AWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLS 293 (622)
Q Consensus 214 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 293 (622)
+|++++|.+++.. ..++|++|++++|.+++.. .. .+++|++|++++
T Consensus 84 ~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~---------------~~---~~~~L~~L~l~~----------- 129 (317)
T 3o53_A 84 TLDLNNNYVQELL-----VGPSIETLHAANNNISRVS---------------CS---RGQGKKNIYLAN----------- 129 (317)
T ss_dssp EEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEE---------------EC---CCSSCEEEECCS-----------
T ss_pred EEECcCCcccccc-----CCCCcCEEECCCCccCCcC---------------cc---ccCCCCEEECCC-----------
Confidence 6666666665322 2356666666666655321 00 012344444433
Q ss_pred ccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCcc-CCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 294 LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSM-GFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 294 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
|.+.+..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|.+++. + ....+++|++|+++
T Consensus 130 --------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls 199 (317)
T 3o53_A 130 --------NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLS 199 (317)
T ss_dssp --------SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECC
T ss_pred --------CCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECC
Confidence 33444444556666777777777777766555544 3566777777777776643 2 22346677777777
Q ss_pred CCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC-ccchHHhhcccccceeecCC
Q 037539 373 KNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD-GAIPEEIMDLVGLIALNLSR 451 (622)
Q Consensus 373 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~ 451 (622)
+|.+ ..+|..+. .+++|++|++++|++++ +|..+. .+++|+.|++++|++. +..+..+..++.|+.|++++
T Consensus 200 ~N~l-~~l~~~~~-~l~~L~~L~L~~N~l~~-l~~~~~-----~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 200 SNKL-AFMGPEFQ-SAAGVTWISLRNNKLVL-IEKALR-----FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp SSCC-CEECGGGG-GGTTCSEEECTTSCCCE-ECTTCC-----CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCcC-Ccchhhhc-ccCcccEEECcCCcccc-hhhHhh-----cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 7776 44444443 56777777777777663 333332 5666777777777766 55566666666777666664
Q ss_pred c
Q 037539 452 N 452 (622)
Q Consensus 452 n 452 (622)
+
T Consensus 272 ~ 272 (317)
T 3o53_A 272 V 272 (317)
T ss_dssp H
T ss_pred c
Confidence 3
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.8e-24 Score=212.71 Aligned_cols=210 Identities=22% Similarity=0.185 Sum_probs=175.2
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
.++.|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555555666678889999999999999998877889999999999999999987777889999999999999
Q ss_pred CCcccccCchhHHhhcccccEeecCCCcCccc-CChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccc----ee
Q 037539 373 KNAIFGEIPTWIGESLQNLIVLSLKSNKFHGN-IPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI----AL 447 (622)
Q Consensus 373 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L 447 (622)
+|.+. .++...+..+++|++|++++|.+.+. +|..+. .+++|++|++++|++++..+..+..+++|+ +|
T Consensus 109 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-----NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp TSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-----GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred CCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhc-----cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence 99984 44443334789999999999999864 466665 789999999999999988778888888887 89
Q ss_pred ecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 448 NLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 448 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
++++|.+++..+..+. ..+|+.|++++|++++..+..+..+++|++|++++|++.|.+|..
T Consensus 183 ~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 183 DLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp ECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 9999999965555554 458999999999999877777899999999999999999998754
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=5.9e-24 Score=208.15 Aligned_cols=187 Identities=24% Similarity=0.267 Sum_probs=160.5
Q ss_pred CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEee
Q 037539 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 395 (622)
+++++|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+ ..++...+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEEE
Confidence 5788888888888877777888888999999999888866666778888999999999988 556666555788999999
Q ss_pred cCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCC
Q 037539 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR 475 (622)
Q Consensus 396 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 475 (622)
+++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++
T Consensus 116 l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFD-----SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp CCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCccCeeCHHHhC-----cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCC
Confidence 999998877766665 789999999999999977777789999999999999999987777899999999999999
Q ss_pred CccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 476 NLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 476 n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
|++++..+..+..+++|+.|++++|++.|.++.
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 191 NQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred CcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 999987777789999999999999999988764
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=7.3e-23 Score=200.35 Aligned_cols=205 Identities=24% Similarity=0.274 Sum_probs=179.9
Q ss_pred CCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeec
Q 037539 317 RLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSL 396 (622)
Q Consensus 317 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L 396 (622)
..+.++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+ ..++..++..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEEC
Confidence 5789999999998 4565543 6899999999999977777999999999999999999 6788777767999999999
Q ss_pred CCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCC
Q 037539 397 KSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRN 476 (622)
Q Consensus 397 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 476 (622)
++|++.+..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 93 ~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 93 TDNKLQALPIGVFD-----QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp CSSCCCCCCTTTTT-----TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCCcCCHhHcc-----cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 99999977666555 7999999999999999888888999999999999999999777777999999999999999
Q ss_pred ccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcCCCCCC
Q 037539 477 LFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 477 ~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 530 (622)
++++..+..|..+++|++|++++|++++..+.. ..+..++.+.+.+||+.|+|+
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 999888888999999999999999998544432 346778888999999999875
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=3.2e-23 Score=203.75 Aligned_cols=208 Identities=21% Similarity=0.173 Sum_probs=178.6
Q ss_pred CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEee
Q 037539 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 395 (622)
+++++|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+ ++...+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc-cChhhhcCCccccEEE
Confidence 579999999999998888889999999999999999997777889999999999999999944 4444344799999999
Q ss_pred cCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCcc-chHHhhcccccceeecCCccccCCCccccCCCCCCC----E
Q 037539 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA-IPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD----F 470 (622)
Q Consensus 396 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~ 470 (622)
+++|.+.+..+..+. .+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+ .
T Consensus 107 l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 107 AVETNLASLENFPIG-----HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CTTSCCCCSTTCCCT-----TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred CCCCCccccCchhcc-----cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence 999999977665555 799999999999999864 588999999999999999999987777887777777 9
Q ss_pred EeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcCCCCCC
Q 037539 471 LDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 471 L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 530 (622)
|++++|++++..+..+.. .+|++|++++|++++..+.. ..+..++.+.+.+|++.|+|+
T Consensus 182 L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 999999999776665544 48999999999998554432 457788889999999999886
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=4.6e-23 Score=203.53 Aligned_cols=181 Identities=25% Similarity=0.188 Sum_probs=138.7
Q ss_pred CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEee
Q 037539 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 395 (622)
+.++.|++++|++++..+..|..+++|++|++++|.+++..+ ...+++|++|++++|.+ ..+|..+. .+++|++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l-~~l~~~~~-~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQL-QSLPLLGQ-TLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCC-SSCCCCTT-TCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcC-CcCchhhc-cCCCCCEEE
Confidence 466777777777776666667777777777777777764322 25677777777777777 56665544 577778888
Q ss_pred cCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCC
Q 037539 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR 475 (622)
Q Consensus 396 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 475 (622)
+++|++++..+..+. .+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++
T Consensus 107 l~~N~l~~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 107 VSFNRLTSLPLGALR-----GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CCSSCCCCCCSSTTT-----TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCcccCHHHHc-----CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence 888877766665555 678888888888888877777788889999999999999876666778899999999999
Q ss_pred CccCccCCccccCCCCCCEEECcCCcCcccC
Q 037539 476 NLFSGSIPCSLSQLSGLGVLDLSYNNLSGKI 506 (622)
Q Consensus 476 n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~ 506 (622)
|+++ .+|..+...++|+.+++++|++.|.+
T Consensus 182 N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp SCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 9998 66777778889999999999998765
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.4e-23 Score=222.67 Aligned_cols=224 Identities=22% Similarity=0.133 Sum_probs=179.7
Q ss_pred CCchhHHhcC---CCCcEEEccCCcCcccCCCC-----cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCC
Q 037539 263 SIPDWFWDLS---NKLSYLNLSNNHFRGKLPDL-----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPD 334 (622)
Q Consensus 263 ~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~-----~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~ 334 (622)
.+|..+.... ++|+.|++++|.+.+..|.. .|+.|++++|.+.+..+ +..+++|++|++++|.+++..+
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~- 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV- 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-
Confidence 3455544432 38999999999998766532 79999999999987655 8899999999999999885432
Q ss_pred ccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHh
Q 037539 335 SMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYK 414 (622)
Q Consensus 335 ~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 414 (622)
.++|++|++++|.+++..+. .+++|++|++++|.+.+..|..+. .+++|++|++++|.+++.+|..+.
T Consensus 98 ----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~---- 165 (487)
T 3oja_A 98 ----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELA---- 165 (487)
T ss_dssp ----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGG----
T ss_pred ----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHh----
Confidence 38899999999999865443 468899999999999665565555 689999999999999987776553
Q ss_pred hhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCE
Q 037539 415 STLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGV 494 (622)
Q Consensus 415 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 494 (622)
..+++|+.|+|++|.+++..+ ...+++|+.|+|++|.+++.++ .+..+++|+.|+|++|.+++ +|..+..+++|+.
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~ 241 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEH 241 (487)
T ss_dssp GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCE
T ss_pred hhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCE
Confidence 157899999999999986532 3468999999999999986444 48889999999999999995 6777888999999
Q ss_pred EECcCCcCccc
Q 037539 495 LDLSYNNLSGK 505 (622)
Q Consensus 495 L~ls~N~l~~~ 505 (622)
|++++|++.|.
T Consensus 242 L~l~~N~l~c~ 252 (487)
T 3oja_A 242 FDLRGNGFHCG 252 (487)
T ss_dssp EECTTCCBCHH
T ss_pred EEcCCCCCcCc
Confidence 99999999843
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5.8e-23 Score=202.81 Aligned_cols=206 Identities=23% Similarity=0.255 Sum_probs=178.6
Q ss_pred ccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccc
Q 037539 312 WLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNL 391 (622)
Q Consensus 312 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L 391 (622)
+..++++++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+ ..++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC--CCCCcC
Confidence 567889999999999998 4555543 7899999999999988888999999999999999999 455544 368999
Q ss_pred cEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEE
Q 037539 392 IVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFL 471 (622)
Q Consensus 392 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 471 (622)
++|++++|++. .+|..+. .+++|++|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|+.|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~-----~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQ-----TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CEEECCSSCCS-SCCCCTT-----TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEECCCCcCC-cCchhhc-----cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 99999999998 4454443 79999999999999998778889999999999999999998888889999999999
Q ss_pred eCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcCCCCCC
Q 037539 472 DLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 472 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 530 (622)
+|++|++++..+..|..+++|++|++++|+++ .+|.+ .....+..+.+.+||+.|+|.
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 99999999777777899999999999999999 55554 445567888899999999874
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6.8e-23 Score=200.75 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=17.1
Q ss_pred CCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCC
Q 037539 131 HMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSG 171 (622)
Q Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 171 (622)
.+++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 147 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc
Confidence 34444444444444443333334444444444444444443
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=7.1e-23 Score=200.59 Aligned_cols=210 Identities=23% Similarity=0.295 Sum_probs=155.7
Q ss_pred hcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCc
Q 037539 71 VAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIP 150 (622)
Q Consensus 71 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 150 (622)
+..+++|++|++++|.+... ..+..+ ++|++|++++|.+++ + ..+..+++|++|++++|.+++..+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~----~~l~~l-~~L~~L~l~~n~l~~--~-------~~l~~l~~L~~L~L~~n~l~~~~~ 102 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV----QGIQYL-PNVRYLALGGNKLHD--I-------SALKELTNLTYLILTGNQLQSLPN 102 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC----TTGGGC-TTCCEEECTTSCCCC--C-------GGGTTCTTCCEEECTTSCCCCCCT
T ss_pred cccccceeeeeeCCCCcccc----cccccC-CCCcEEECCCCCCCC--c-------hhhcCCCCCCEEECCCCccCccCh
Confidence 45567777777777777654 245666 788888888887764 1 234677888888888888887777
Q ss_pred hhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccc
Q 037539 151 KFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKS 229 (622)
Q Consensus 151 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~ 229 (622)
..|..+++|++|++++|++++..+..+ +.+++ |++|++++|.+++..+. ++.+++|++|++++|.+++..+..
T Consensus 103 ~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 176 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVENQLQSLPDGVF-----DKLTN-LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176 (272)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTT-----TTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hHhcCCcCCCEEECCCCcCCccCHHHh-----ccCCC-CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence 778888888888888888887776663 44444 88888888888876666 788888888888888888777777
Q ss_pred cCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccC
Q 037539 230 LSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLP 309 (622)
Q Consensus 230 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~ 309 (622)
+..+++|++|++++|++++ ++...+..+++|+.|++++|++.+..| .++.+++..|.+.|.+|
T Consensus 177 ~~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~l~~N~~~~~~~--~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKS---------------VPDGVFDRLTSLQYIWLHDNPWDCTCP--GIRYLSEWINKHSGVVR 239 (272)
T ss_dssp TTTCTTCCEEECCSSCCSC---------------CCTTTTTTCTTCCEEECCSSCBCCCTT--TTHHHHHHHHHTGGGBB
T ss_pred hcCCccCCEEECCCCcCCc---------------cCHHHHhCCcCCCEEEccCCCccccCc--HHHHHHHHHHhCCCccc
Confidence 7888888888888888763 333434445688888888888887766 36667777788888888
Q ss_pred ccccCCCC
Q 037539 310 DCWLHFDR 317 (622)
Q Consensus 310 ~~~~~~~~ 317 (622)
..++.+..
T Consensus 240 ~~~~~~~~ 247 (272)
T 3rfs_A 240 NSAGSVAP 247 (272)
T ss_dssp CTTSCBCG
T ss_pred CcccccCC
Confidence 77665543
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.7e-22 Score=195.51 Aligned_cols=214 Identities=21% Similarity=0.218 Sum_probs=153.4
Q ss_pred CCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeec
Q 037539 317 RLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSL 396 (622)
Q Consensus 317 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L 396 (622)
..++++++++.++ .+|..+. ++++.|++++|.+.+..+..|.++++|++|++++|.+.+ ++...+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEEC
Confidence 4566777777776 4444443 577777777777777666677777788888888877743 44443336778888888
Q ss_pred CCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCC
Q 037539 397 KSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRN 476 (622)
Q Consensus 397 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 476 (622)
++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 91 ~~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 91 ANNQLASLPLGVFD-----HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp TTSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcccccChhHhc-----ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence 88887766655554 6888888888888888776777888999999999999999777778999999999999999
Q ss_pred ccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCcc------CcccccCCcCCCCCCCCCCCCCCCC
Q 037539 477 LFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSF------NASVYAGNLELCGLPLANMCLDEES 540 (622)
Q Consensus 477 ~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l------~~~~~~~n~~lc~~~~~~~C~~~~~ 540 (622)
++++..+..+..+++|+.|++++|++.|..+....+... ......++ .+|+.+....|..+..
T Consensus 166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~~~ 234 (251)
T 3m19_A 166 QLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDGKV 234 (251)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTSCB
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCCcE
Confidence 999888888999999999999999999874332111111 11112233 3566777778876643
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.4e-23 Score=212.93 Aligned_cols=189 Identities=21% Similarity=0.226 Sum_probs=109.9
Q ss_pred CCCCEEEccCCcccccCCCc----cCCC-CCccEEeeeCCcCCCCCCcc----ccC-CCCccEEEccCCcccccCchhHH
Q 037539 316 DRLFILNLANNRLSGKIPDS----MGFL-NNIWTLNLHNNRLTGKLPSP----LRN-FSQLRVLDLEKNAIFGEIPTWIG 385 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~----~~~l-~~L~~L~Ls~n~i~~~~~~~----l~~-l~~L~~L~L~~n~i~~~~~~~~~ 385 (622)
++|++|++++|++++..+.. +..+ ++|++|++++|.+++..+.. +.. .++|++|++++|.+.+..+..+.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 45555555555555443332 2222 56666666666665443332 223 24677777777776433332221
Q ss_pred h---hcc-cccEeecCCCcCcccCChhhhHhHhhhc-CCccEEECCCCcCCcc----chHHhhc-ccccceeecCCcccc
Q 037539 386 E---SLQ-NLIVLSLKSNKFHGNIPYQFENEYKSTL-GLVRCLDLSSNKLDGA----IPEEIMD-LVGLIALNLSRNHLT 455 (622)
Q Consensus 386 ~---~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~l~ 455 (622)
. .++ +|++|++++|++++..+..+...+. .. ++|++|+|++|.+++. ++..+.. .++|++|+|++|.++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLA-SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHH-hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 1 233 6777777777776666555543333 33 4777777777777642 3444544 347777777777777
Q ss_pred CCCc----cccCCCCCCCEEeCCCCccCcc-------CCccccCCCCCCEEECcCCcCccc
Q 037539 456 GPIT----PKIGELTSLDFLDLSRNLFSGS-------IPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 456 ~~~~----~~l~~l~~L~~L~Ls~n~l~~~-------~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
+..+ ..+..+++|++|+|++|.+.+. ++..+..+++|+.||+++|++...
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 6544 2345667788888877774433 233456677788888888887654
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.4e-24 Score=224.35 Aligned_cols=195 Identities=20% Similarity=0.191 Sum_probs=114.0
Q ss_pred cCCCCCCEEEccCCcccc----cCCCccCCCCCccEEeeeCCcCCCCCCcc----ccCC---------CCccEEEccCCc
Q 037539 313 LHFDRLFILNLANNRLSG----KIPDSMGFLNNIWTLNLHNNRLTGKLPSP----LRNF---------SQLRVLDLEKNA 375 (622)
Q Consensus 313 ~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----l~~l---------~~L~~L~L~~n~ 375 (622)
..+++|++|++++|.+++ .++..+..+++|++|++++|.++...+.. +..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 344444444444444443 23333444455555555555543221111 2222 667777777776
Q ss_pred cc-ccCch--hHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC----ccchHHhhcccccceee
Q 037539 376 IF-GEIPT--WIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD----GAIPEEIMDLVGLIALN 448 (622)
Q Consensus 376 i~-~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~ 448 (622)
+. ..++. ..+..+++|++|++++|.++......+....+..+++|+.|+|++|.++ ..+|..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 64 22331 1222566777777777776632211121112236777788888877775 45677777788888888
Q ss_pred cCCccccCC----Ccccc--CCCCCCCEEeCCCCccCc----cCCccc-cCCCCCCEEECcCCcCcccCC
Q 037539 449 LSRNHLTGP----ITPKI--GELTSLDFLDLSRNLFSG----SIPCSL-SQLSGLGVLDLSYNNLSGKIP 507 (622)
Q Consensus 449 L~~n~l~~~----~~~~l--~~l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~L~~L~ls~N~l~~~~p 507 (622)
|++|.+++. ++..+ +.+++|++|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 888887754 34555 337888888888888886 366666 557888888888888876543
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.7e-23 Score=211.51 Aligned_cols=168 Identities=20% Similarity=0.162 Sum_probs=94.3
Q ss_pred CCCCEEEccCCcccccCCCc----cCC-CCCccEEeeeCCcCCCCCC----ccccCCC-CccEEEccCCcccccCchhHH
Q 037539 316 DRLFILNLANNRLSGKIPDS----MGF-LNNIWTLNLHNNRLTGKLP----SPLRNFS-QLRVLDLEKNAIFGEIPTWIG 385 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~----~~~-l~~L~~L~Ls~n~i~~~~~----~~l~~l~-~L~~L~L~~n~i~~~~~~~~~ 385 (622)
++|++|++++|++++..+.. +.. .++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+.
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 188 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence 45555555555555433322 222 2356666666665553222 2233343 677777777766444443332
Q ss_pred h---hc-ccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchH----HhhcccccceeecCCccccCC
Q 037539 386 E---SL-QNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPE----EIMDLVGLIALNLSRNHLTGP 457 (622)
Q Consensus 386 ~---~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~ 457 (622)
. .+ ++|++|++++|.+++.....+...+....++|++|+|++|.+++..+. .+..+++|++|++++|.+.+.
T Consensus 189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence 1 23 467777777777765544444433333345777777777777654443 234567777777777774433
Q ss_pred Cc-------cccCCCCCCCEEeCCCCccCccCC
Q 037539 458 IT-------PKIGELTSLDFLDLSRNLFSGSIP 483 (622)
Q Consensus 458 ~~-------~~l~~l~~L~~L~Ls~n~l~~~~~ 483 (622)
.+ ..+..+++|+.||+++|++....+
T Consensus 269 ~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 269 SKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 22 356677778888888888775543
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=194.68 Aligned_cols=233 Identities=19% Similarity=0.233 Sum_probs=140.9
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhh--cCCccCcEeEeecCCCCCcCchhhhh
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFF--GNMCSLKKLRLSYNKLSGQYSQVIQN 179 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~L~~n~i~~~~~~~~~~ 179 (622)
..++.+.+.++.++. . .+.....+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+..- .
T Consensus 64 ~~l~~l~l~~~~~~~-~---~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~-~ 138 (310)
T 4glp_A 64 LRVRRLTVGAAQVPA-Q---LLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA-E 138 (310)
T ss_dssp CCCCEEEECSCCCBH-H---HHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH-H
T ss_pred cceeEEEEeCCcCCH-H---HHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH-H
Confidence 457788888887754 1 11111122345679999999999888888877 888899999999998886544210 0
Q ss_pred ccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCcc--C--ccccCCCCCCCEEEccCCCCcccccccc
Q 037539 180 LSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGT--I--DKSLSQLSKLESLSLDGNSLRAISLCIL 254 (622)
Q Consensus 180 l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 254 (622)
..+..+++ |++|++++|.+.+..+. ++.+++|++|++++|++.+. . +..+..+++|++|++++|+++...
T Consensus 139 ~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---- 213 (310)
T 4glp_A 139 LQQWLKPG-LKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT---- 213 (310)
T ss_dssp HHTTBCSC-CCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH----
T ss_pred HHhhhccC-CCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH----
Confidence 00344555 88888888888777666 88888888888888887542 1 223467788888888888776321
Q ss_pred cCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCC---CCCCEEEccCCccccc
Q 037539 255 TSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHF---DRLFILNLANNRLSGK 331 (622)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~---~~L~~L~L~~n~i~~~ 331 (622)
..+.+++..+++|++|++++|++.+. .|..+..+ ++|++|++++|+++ .
T Consensus 214 --------~~~~~l~~~l~~L~~L~Ls~N~l~~~-------------------~p~~~~~~~~~~~L~~L~Ls~N~l~-~ 265 (310)
T 4glp_A 214 --------GVCAALAAAGVQPHSLDLSHNSLRAT-------------------VNPSAPRCMWSSALNSLNLSFAGLE-Q 265 (310)
T ss_dssp --------HHHHHHHHHTCCCSSEECTTSCCCCC-------------------CCSCCSSCCCCTTCCCEECCSSCCC-S
T ss_pred --------HHHHHHHhcCCCCCEEECCCCCCCcc-------------------chhhHHhccCcCcCCEEECCCCCCC-c
Confidence 22222333445666666665555432 22222222 45666666666655 3
Q ss_pred CCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcc
Q 037539 332 IPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAI 376 (622)
Q Consensus 332 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i 376 (622)
+|..+. ++|++|++++|++++. |. +..+++|++|++++|++
T Consensus 266 lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 266 VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTT
T ss_pred hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCC
Confidence 344332 4555555555555532 22 34455555555555554
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2e-22 Score=201.44 Aligned_cols=206 Identities=21% Similarity=0.186 Sum_probs=161.1
Q ss_pred CCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccc--cCCCCCCEEEccCCcccccCC----CccCCCCCccEEe
Q 037539 273 NKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCW--LHFDRLFILNLANNRLSGKIP----DSMGFLNNIWTLN 346 (622)
Q Consensus 273 ~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~--~~~~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~ 346 (622)
++|++|++++|.+.+ ..|..+ ..+++|++|++++|++++..+ ..+..+++|++|+
T Consensus 91 ~~L~~L~l~~n~l~~-------------------~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~ 151 (310)
T 4glp_A 91 SRLKELTLEDLKITG-------------------TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLS 151 (310)
T ss_dssp SCCCEEEEESCCCBS-------------------CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEE
T ss_pred CceeEEEeeCCEecc-------------------chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEE
Confidence 357777777766653 455555 788899999999999986544 3345689999999
Q ss_pred eeCCcCCCCCCccccCCCCccEEEccCCccccc--Cc-hhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEE
Q 037539 347 LHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGE--IP-TWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCL 423 (622)
Q Consensus 347 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L 423 (622)
+++|.+.+..+..+..+++|++|++++|++.+. ++ ......+++|++|++++|+++...+ . ...+...+++|++|
T Consensus 152 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~-~~~l~~~l~~L~~L 229 (310)
T 4glp_A 152 IAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-V-CAALAAAGVQPHSL 229 (310)
T ss_dssp EECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-H-HHHHHHHTCCCSSE
T ss_pred eeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-H-HHHHHhcCCCCCEE
Confidence 999999988888999999999999999987442 22 2222368899999999999863221 1 11223478999999
Q ss_pred ECCCCcCCccchHHhhcc---cccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCC
Q 037539 424 DLSSNKLDGAIPEEIMDL---VGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500 (622)
Q Consensus 424 ~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 500 (622)
+|++|++.+..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|
T Consensus 230 ~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 230 DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp ECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSST
T ss_pred ECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCC
Confidence 999999998778777776 69999999999999 5677664 8999999999999964 43 678899999999999
Q ss_pred cCcc
Q 037539 501 NLSG 504 (622)
Q Consensus 501 ~l~~ 504 (622)
+++.
T Consensus 305 ~l~~ 308 (310)
T 4glp_A 305 PFLV 308 (310)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 9874
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.4e-23 Score=215.07 Aligned_cols=97 Identities=22% Similarity=0.138 Sum_probs=48.2
Q ss_pred CchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcc---cccCCC--------CCCCCCCCEEEe
Q 037539 149 IPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDF---TGPIPH--------LGGFSSLEAWSL 217 (622)
Q Consensus 149 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~---~~~~~~--------l~~l~~L~~L~L 217 (622)
++..+..+++|++|++++|.+++..+..+... +..+++ |++|+|++|.+ .+.+|. +..+++|++|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~-L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN-IASKKD-LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHT-TTTCTT-CCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHH-HHhCCC-ccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 33444444555555555555444433333222 333333 55555554322 111121 245566666666
Q ss_pred ecccCCc----cCccccCCCCCCCEEEccCCCCc
Q 037539 218 DVNCLNG----TIDKSLSQLSKLESLSLDGNSLR 247 (622)
Q Consensus 218 ~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~ 247 (622)
++|.+++ .++..+..+++|++|++++|.++
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 6666654 34555666777777777777664
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.3e-22 Score=205.66 Aligned_cols=182 Identities=21% Similarity=0.247 Sum_probs=99.7
Q ss_pred CCEEEccCCcccccCCCccCCCCCccEEeeeCC-cCCC-CCCccccCCCCccEEEccCC-ccccc-CchhHHhhcc-ccc
Q 037539 318 LFILNLANNRLSGKIPDSMGFLNNIWTLNLHNN-RLTG-KLPSPLRNFSQLRVLDLEKN-AIFGE-IPTWIGESLQ-NLI 392 (622)
Q Consensus 318 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~-~~~~~l~~l~~L~~L~L~~n-~i~~~-~~~~~~~~l~-~L~ 392 (622)
|++|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+.+. ++..+. .++ +|+
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~ 198 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETIT 198 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCC
Confidence 333333333333333333334444444444444 2332 12333445566666666666 55332 233333 566 666
Q ss_pred EeecCCCc--Cc-ccCChhhhHhHhhhcCCccEEECCCCc-CCccchHHhhcccccceeecCCcc-ccCCCccccCCCCC
Q 037539 393 VLSLKSNK--FH-GNIPYQFENEYKSTLGLVRCLDLSSNK-LDGAIPEEIMDLVGLIALNLSRNH-LTGPITPKIGELTS 467 (622)
Q Consensus 393 ~L~L~~n~--l~-~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~ 467 (622)
+|++++|. ++ +.++..+ ..+++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~-----~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLV-----RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHH-----HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred EEEeCCCcccCCHHHHHHHH-----hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 66666663 33 1222222 257777777777777 565666677777888888888874 33222335677888
Q ss_pred CCEEeCCCCccCccCCccccCC-CCCCEEECcCCcCcccCCCC
Q 037539 468 LDFLDLSRNLFSGSIPCSLSQL-SGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 468 L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~ls~N~l~~~~p~~ 509 (622)
|++|++++| ++.. .+..+ ..++.|++++|++++..|..
T Consensus 274 L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 274 LKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCc
Confidence 888888888 4432 23333 23566667888888776653
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.8e-22 Score=204.57 Aligned_cols=202 Identities=18% Similarity=0.191 Sum_probs=162.7
Q ss_pred CCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCccccc-CCCccCCCCCccEEeeeCCc
Q 037539 273 NKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGK-IPDSMGFLNNIWTLNLHNNR 351 (622)
Q Consensus 273 ~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~ 351 (622)
+.++.|++++|.+.+ ..+. +..+++|++|++++|.+++. .+..+..+++|++|++++|.
T Consensus 70 ~~l~~L~l~~n~l~~-------------------~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~ 129 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQ-------------------PLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 129 (336)
T ss_dssp TTCSEEECTTCEECS-------------------CCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB
T ss_pred ccceEEEcCCccccc-------------------cchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc
Confidence 466666666665553 3222 45688999999999998865 77778899999999999999
Q ss_pred CCCCCCccccCCCCccEEEccCC-ccccc-CchhHHhhcccccEeecCCC-cCccc-CChhhhHhHhhhcC-CccEEECC
Q 037539 352 LTGKLPSPLRNFSQLRVLDLEKN-AIFGE-IPTWIGESLQNLIVLSLKSN-KFHGN-IPYQFENEYKSTLG-LVRCLDLS 426 (622)
Q Consensus 352 i~~~~~~~l~~l~~L~~L~L~~n-~i~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~~~~l~-~L~~L~L~ 426 (622)
+++..+..+..+++|++|++++| .+.+. ++..+ ..+++|++|++++| .+++. ++..+ ..++ +|++|+++
T Consensus 130 l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~-----~~l~~~L~~L~l~ 203 (336)
T 2ast_B 130 LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL-SSCSRLDELNLSWCFDFTEKHVQVAV-----AHVSETITQLNLS 203 (336)
T ss_dssp CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH-HHCTTCCEEECCCCTTCCHHHHHHHH-----HHSCTTCCEEECC
T ss_pred cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH-hcCCCCCEEcCCCCCCcChHHHHHHH-----HhcccCCCEEEeC
Confidence 98777888999999999999999 67443 44444 47999999999999 88753 23323 3788 99999999
Q ss_pred CC--cCC-ccchHHhhcccccceeecCCcc-ccCCCccccCCCCCCCEEeCCCCc-cCccCCccccCCCCCCEEECcCC
Q 037539 427 SN--KLD-GAIPEEIMDLVGLIALNLSRNH-LTGPITPKIGELTSLDFLDLSRNL-FSGSIPCSLSQLSGLGVLDLSYN 500 (622)
Q Consensus 427 ~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~ls~N 500 (622)
+| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 99 555 4667788899999999999999 777788899999999999999995 43333336888999999999999
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=9.8e-22 Score=188.65 Aligned_cols=186 Identities=18% Similarity=0.167 Sum_probs=123.0
Q ss_pred cCccccCccccCCCCCCEEEccCCc-ccccCCCccCCCCCccEEeeeC-CcCCCCCCccccCCCCccEEEccCCcccccC
Q 037539 303 LLSGGLPDCWLHFDRLFILNLANNR-LSGKIPDSMGFLNNIWTLNLHN-NRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380 (622)
Q Consensus 303 ~l~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 380 (622)
.+.+..+..|..+++|++|++++|+ ++...+..|..+++|++|++++ |.+++..+..|..+++|++|++++|.+ ..+
T Consensus 42 ~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l-~~l 120 (239)
T 2xwt_C 42 HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMF 120 (239)
T ss_dssp CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC-CSC
T ss_pred cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC-ccc
Confidence 3333444466777777778887776 7666666777777777887777 777766666777777777777777777 446
Q ss_pred chhHHhhccccc---EeecCCC-cCcccCChhhhHhHhhhcCCcc-EEECCCCcCCccchHHhhcccccceeecCCcc-c
Q 037539 381 PTWIGESLQNLI---VLSLKSN-KFHGNIPYQFENEYKSTLGLVR-CLDLSSNKLDGAIPEEIMDLVGLIALNLSRNH-L 454 (622)
Q Consensus 381 ~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l 454 (622)
|. +..+++|+ +|++++| .+++..+..+. .+++|+ .|++++|+++...+..+.. ++|++|++++|+ +
T Consensus 121 p~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~-----~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 121 PD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQ-----GLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYL 192 (239)
T ss_dssp CC--CTTCCBCCSEEEEEEESCTTCCEECTTTTT-----TTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTC
T ss_pred cc--cccccccccccEEECCCCcchhhcCccccc-----chhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCc
Confidence 65 22566666 7777777 66655554444 567777 7777777776333333333 677777777774 7
Q ss_pred cCCCccccCCC-CCCCEEeCCCCccCccCCccccCCCCCCEEECcCC
Q 037539 455 TGPITPKIGEL-TSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500 (622)
Q Consensus 455 ~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 500 (622)
++..+..|..+ ++|+.|++++|++++. |.. .+++|+.|+++++
T Consensus 193 ~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 193 TVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp CEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred ccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 65555667777 7777777777777643 332 5566777777665
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=2e-21 Score=186.52 Aligned_cols=197 Identities=17% Similarity=0.180 Sum_probs=167.4
Q ss_pred CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCc-CCCCCCccccCCCCccEEEccC-CcccccCchhHHhhcccccE
Q 037539 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNR-LTGKLPSPLRNFSQLRVLDLEK-NAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~~l~~L~~ 393 (622)
+++++|++++|++++..+..|..+++|++|++++|. ++...+..|.++++|++|++++ |.+ ..++...+..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l-~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL-TYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC-CEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe-eEcCHHHhCCCCCCCE
Confidence 389999999999998888889999999999999997 8877777899999999999998 998 5666655557999999
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCcc---EEECCCC-cCCccchHHhhcccccc-eeecCCccccCCCccccCCCCCC
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVR---CLDLSSN-KLDGAIPEEIMDLVGLI-ALNLSRNHLTGPITPKIGELTSL 468 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L 468 (622)
|++++|++++ +|. +. .+++|+ .|++++| .+++..+..|.++++|+ +|++++|.++...+..+.. ++|
T Consensus 110 L~l~~n~l~~-lp~-~~-----~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L 181 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LT-----KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKL 181 (239)
T ss_dssp EEEEEECCCS-CCC-CT-----TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEE
T ss_pred EeCCCCCCcc-ccc-cc-----cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCC
Confidence 9999999986 443 33 677787 9999999 99977777899999999 9999999999444445555 899
Q ss_pred CEEeCCCCc-cCccCCccccCC-CCCCEEECcCCcCcccCCCCCcCCccCcccccCC
Q 037539 469 DFLDLSRNL-FSGSIPCSLSQL-SGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGN 523 (622)
Q Consensus 469 ~~L~Ls~n~-l~~~~~~~l~~l-~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n 523 (622)
+.|++++|+ +++..+..|..+ ++|++|++++|+++ .+|.. .+..++.+.+.++
T Consensus 182 ~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC
T ss_pred CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCc
Confidence 999999995 997778889999 99999999999998 55654 6777776666554
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.6e-20 Score=181.60 Aligned_cols=160 Identities=24% Similarity=0.254 Sum_probs=132.4
Q ss_pred CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEee
Q 037539 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 395 (622)
+.++.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+ ..++...+..+++|++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc-cccChhHhcccCCCCEEE
Confidence 4788888888888877777788888888888888888877777788888888888888888 455555555788888888
Q ss_pred cCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCC
Q 037539 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR 475 (622)
Q Consensus 396 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 475 (622)
+++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+|++
T Consensus 114 L~~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 114 LGGNQLKSLPSGVFD-----RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCcCCCcChhHhc-----cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 888888866665554 688899999999999877777888999999999999999987777899999999999999
Q ss_pred CccCcc
Q 037539 476 NLFSGS 481 (622)
Q Consensus 476 n~l~~~ 481 (622)
|++...
T Consensus 189 N~~~c~ 194 (251)
T 3m19_A 189 NQFDCS 194 (251)
T ss_dssp CCBCTT
T ss_pred CceeCC
Confidence 999865
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.3e-20 Score=187.89 Aligned_cols=189 Identities=22% Similarity=0.324 Sum_probs=153.7
Q ss_pred ccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccC
Q 037539 294 LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEK 373 (622)
Q Consensus 294 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 373 (622)
++.|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|++|++++
T Consensus 43 L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 43 ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTS 116 (308)
T ss_dssp CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTT
T ss_pred cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCC
Confidence 3444444444432 33 57788999999999999986544 88999999999999999853 3688999999999999
Q ss_pred CcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCcc
Q 037539 374 NAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNH 453 (622)
Q Consensus 374 n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 453 (622)
|.+ ..++. + ..+++|++|++++|.+++..+ +. .+++|+.|++++|.+++..+ +..+++|+.|++++|.
T Consensus 117 n~l-~~~~~-l-~~l~~L~~L~l~~n~l~~~~~--l~-----~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 117 TQI-TDVTP-L-AGLSNLQVLYLDLNQITNISP--LA-----GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp SCC-CCCGG-G-TTCTTCCEEECCSSCCCCCGG--GG-----GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred CCC-CCchh-h-cCCCCCCEEECCCCccCcCcc--cc-----CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 998 45554 3 378999999999999986544 32 78999999999999985444 8899999999999999
Q ss_pred ccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcc
Q 037539 454 LTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 454 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 504 (622)
+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 986443 8889999999999999996553 8899999999999999974
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=4e-20 Score=184.31 Aligned_cols=191 Identities=24% Similarity=0.284 Sum_probs=117.7
Q ss_pred CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccc
Q 037539 49 SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKA 128 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 128 (622)
++|++|++++|.++..+ .+..+++|++|++++|.+++.. .+..+ ++|++|++++|.+++ + ..
T Consensus 41 ~~L~~L~l~~~~i~~l~----~~~~l~~L~~L~L~~n~i~~~~----~~~~l-~~L~~L~L~~n~l~~--~-------~~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE----GVQYLNNLIGLELKDNQITDLA----PLKNL-TKITELELSGNPLKN--V-------SA 102 (308)
T ss_dssp HTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCG----GGTTC-CSCCEEECCSCCCSC--C-------GG
T ss_pred CCcCEEEeeCCCccCch----hhhccCCCCEEEccCCcCCCCh----hHccC-CCCCEEEccCCcCCC--c-------hh
Confidence 66666666666665544 3566677777777777666542 25555 677777777777653 1 12
Q ss_pred cCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCC
Q 037539 129 FQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGG 208 (622)
Q Consensus 129 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~ 208 (622)
+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+ ++.+++ |++|++++|.+++..+ +..
T Consensus 103 ~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-------l~~l~~-L~~L~l~~n~l~~~~~-l~~ 171 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-------LAGLTN-LQYLSIGNAQVSDLTP-LAN 171 (308)
T ss_dssp GTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-------GGGCTT-CCEEECCSSCCCCCGG-GTT
T ss_pred hcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc-------ccCCCC-ccEEEccCCcCCCChh-hcC
Confidence 45667777777777776643 2 26667777777777777665433 233333 7777777776664333 666
Q ss_pred CCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcc
Q 037539 209 FSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRG 287 (622)
Q Consensus 209 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 287 (622)
+++|++|++++|.+++..+ +..+++|++|++++|++++. +. + ..+++|+.|++++|++.+
T Consensus 172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~---------------~~-l-~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV---------------SP-L-ANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC---------------GG-G-TTCTTCCEEEEEEEEEEC
T ss_pred CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc---------------cc-c-cCCCCCCEEEccCCeeec
Confidence 7777777777777764432 66667777777777776532 21 2 234577777777777654
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=3.4e-19 Score=181.12 Aligned_cols=57 Identities=12% Similarity=0.045 Sum_probs=38.5
Q ss_pred cCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCc
Q 037539 189 LEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLR 247 (622)
Q Consensus 189 L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 247 (622)
-++++.++++++..+..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.
T Consensus 11 ~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~ 67 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67 (350)
T ss_dssp TTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC
T ss_pred CCEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC
Confidence 356677777776433324 256778888888877665567777777777777777754
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=5.6e-20 Score=173.60 Aligned_cols=158 Identities=24% Similarity=0.227 Sum_probs=119.3
Q ss_pred EEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEE
Q 037539 344 TLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCL 423 (622)
Q Consensus 344 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L 423 (622)
.+++++|.++ .+|..+. +.+++|++++|.+.+..+...+..+++|++|++++|++++..+..+. .+++|++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-----~l~~L~~L 86 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE-----GASGVNEI 86 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT-----TCTTCCEE
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC-----CCCCCCEE
Confidence 4555555554 2333322 23456666666663333433334566777777777776665555554 67888888
Q ss_pred ECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCc
Q 037539 424 DLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 424 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++.
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 88888888777888899999999999999999888899999999999999999999888999999999999999999999
Q ss_pred ccCCCC
Q 037539 504 GKIPSG 509 (622)
Q Consensus 504 ~~~p~~ 509 (622)
|.++..
T Consensus 167 c~c~l~ 172 (220)
T 2v70_A 167 CNCYLA 172 (220)
T ss_dssp CSGGGH
T ss_pred CCCchH
Confidence 887643
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=4.5e-19 Score=166.14 Aligned_cols=163 Identities=21% Similarity=0.228 Sum_probs=96.0
Q ss_pred CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEee
Q 037539 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 395 (622)
+++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+ ..++...+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC-CccCHhHhcCccCCCEEE
Confidence 3556666666666554444555566666666666666544444555666666666666665 344443333556666666
Q ss_pred cCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCC
Q 037539 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR 475 (622)
Q Consensus 396 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 475 (622)
+++|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|.+.+ .+++|+.|+++.
T Consensus 107 L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~ 174 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFD-----KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWI 174 (208)
T ss_dssp CCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHH
T ss_pred cCCCcCcccCHhHhc-----cCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHH
Confidence 666666544443333 46666666666666665555556666666677776665542 345666667777
Q ss_pred CccCccCCccccCCCC
Q 037539 476 NLFSGSIPCSLSQLSG 491 (622)
Q Consensus 476 n~l~~~~~~~l~~l~~ 491 (622)
|.+++.+|+.++.++.
T Consensus 175 n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 175 NKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHCTTTBBCTTSSBCT
T ss_pred HhCCceeeccCccccC
Confidence 7777666666665543
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1.6e-18 Score=176.21 Aligned_cols=240 Identities=17% Similarity=0.136 Sum_probs=124.3
Q ss_pred cEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccc
Q 037539 105 ETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGC 184 (622)
Q Consensus 105 ~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~ 184 (622)
++++.++++++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+|... |..
T Consensus 12 ~~v~C~~~~Lt--~iP~~l--------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~----f~~ 77 (350)
T 4ay9_X 12 RVFLCQESKVT--EIPSDL--------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV----FSN 77 (350)
T ss_dssp TEEEEESTTCC--SCCTTC--------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS----BCS
T ss_pred CEEEecCCCCC--ccCcCc--------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH----hhc
Confidence 45555666665 344322 1456666666666664444556666666666666666654433211 333
Q ss_pred cCCCcCE-EEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccC-CCCcccccccccCCCCcc
Q 037539 185 VVNSLEG-LYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDG-NSLRAISLCILTSPIGIS 261 (622)
Q Consensus 185 ~~~~L~~-L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~ 261 (622)
+++ +++ +.+++|+++...+. |..+++|++|++++|.++...+..+....++..|++.+ +.+..
T Consensus 78 L~~-l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~------------- 143 (350)
T 4ay9_X 78 LPK-LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT------------- 143 (350)
T ss_dssp CTT-CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE-------------
T ss_pred chh-hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc-------------
Confidence 333 433 44455666655555 66666666666666666655554555555566666644 33432
Q ss_pred cCCchh-HHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccC-CcccccCCCccCCC
Q 037539 262 DSIPDW-FWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLAN-NRLSGKIPDSMGFL 339 (622)
Q Consensus 262 ~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~-n~i~~~~~~~~~~l 339 (622)
++.. +......++.|++++|++.. ++.......+|+++++++ |.++...++.|..+
T Consensus 144 --l~~~~f~~~~~~l~~L~L~~N~i~~--------------------i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l 201 (350)
T 4ay9_X 144 --IERNSFVGLSFESVILWLNKNGIQE--------------------IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201 (350)
T ss_dssp --ECTTSSTTSBSSCEEEECCSSCCCE--------------------ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTE
T ss_pred --ccccchhhcchhhhhhccccccccC--------------------CChhhccccchhHHhhccCCcccCCCHHHhccC
Confidence 1211 11222245555555555442 222222334566666653 45554444456666
Q ss_pred CCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCC
Q 037539 340 NNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSN 399 (622)
Q Consensus 340 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n 399 (622)
++|++|++++|+++...+..+ .+|+.|.+.++.-.+.+|. + ..+++|+.+++.++
T Consensus 202 ~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~-l-~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 202 SGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT-L-EKLVALMEASLTYP 256 (350)
T ss_dssp ECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC-T-TTCCSCCEEECSCH
T ss_pred cccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCC-c-hhCcChhhCcCCCC
Confidence 677777777776664333333 3444444444433355553 2 25667777776543
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=2.4e-19 Score=167.95 Aligned_cols=175 Identities=22% Similarity=0.255 Sum_probs=145.1
Q ss_pred CEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCC
Q 037539 319 FILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKS 398 (622)
Q Consensus 319 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~ 398 (622)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+ ..++...+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCC
Confidence 56777777776 344433 46899999999999977777788999999999999998 566666655789999999999
Q ss_pred CcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCcc
Q 037539 399 NKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLF 478 (622)
Q Consensus 399 n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 478 (622)
|++++..+..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 86 n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 86 NQLQSLPNGVFD-----KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp SCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CcCCccCHhHhc-----CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 999876665554 789999999999999977777788999999999999999977777788999999999999987
Q ss_pred CccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 479 SGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 479 ~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
.+ .++.|+.|++++|++++.+|..
T Consensus 161 ~~-------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 161 DC-------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp CC-------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred ec-------CCCCHHHHHHHHHhCCceeecc
Confidence 63 4567899999999999998864
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.9e-19 Score=169.94 Aligned_cols=172 Identities=19% Similarity=0.177 Sum_probs=112.3
Q ss_pred CccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhccccc
Q 037539 365 QLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGL 444 (622)
Q Consensus 365 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 444 (622)
+|++|++++|.+ ..++...+..+++|++|++++|++.+..|..+. .+++|++|+|++|.+++..+..|..+++|
T Consensus 33 ~l~~L~l~~n~i-~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~-----~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 106 (220)
T 2v9t_B 33 TITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ-----GLRSLNSLVLYGNKITELPKSLFEGLFSL 106 (220)
T ss_dssp TCCEEECCSSCC-CEECTTSSTTCTTCCEEECCSSCCCEECTTTTT-----TCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCEEECCCCcC-CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh-----CCcCCCEEECCCCcCCccCHhHccCCCCC
Confidence 444444444444 223322222445555555555555544444443 56677777777777775555567788889
Q ss_pred ceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCc
Q 037539 445 IALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNL 524 (622)
Q Consensus 445 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~ 524 (622)
++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++.|.++. ..+... +..++
T Consensus 107 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l----~~l~~~-l~~~~ 181 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL----KWLADY-LHTNP 181 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG----HHHHHH-HHHCC
T ss_pred CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc----HHHHHH-HHhCC
Confidence 9999999999888888899999999999999999988888899999999999999999887543 222111 11111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 037539 525 ELCGLPLANMCLDEESTPGPGTDDDS 550 (622)
Q Consensus 525 ~lc~~~~~~~C~~~~~~~~~~~~~~~ 550 (622)
.. .....|..|...+|....+..
T Consensus 182 ~~---~~~~~C~~P~~l~g~~l~~l~ 204 (220)
T 2v9t_B 182 IE---TSGARCTSPRRLANKRIGQIK 204 (220)
T ss_dssp CB---CSCCBEEESGGGTTCBGGGSC
T ss_pred CC---ccCCCcCCchHHcCCchhhCC
Confidence 11 123468777777776655544
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=1.3e-18 Score=185.98 Aligned_cols=181 Identities=25% Similarity=0.359 Sum_probs=97.5
Q ss_pred CCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCC
Q 037539 274 KLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLT 353 (622)
Q Consensus 274 ~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~ 353 (622)
+++.|++++|.+.+ +| ..+ +++|++|++++|+++ .+| ..+++|++|++++|.++
T Consensus 60 ~L~~L~Ls~n~L~~-lp-------------------~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~ 113 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LP-------------------DNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS 113 (571)
T ss_dssp TCSEEECCSSCCSC-CC-------------------SCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS
T ss_pred CccEEEeCCCCCCc-cC-------------------HhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC
Confidence 67777777777664 22 222 145556666666555 333 23455666666666555
Q ss_pred CCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCcc
Q 037539 354 GKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA 433 (622)
Q Consensus 354 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 433 (622)
+ +|. +.. +|++|++++|.+ ..+|. .+++|+.|++++|.+++ +|. .+++|+.|+|++|++++
T Consensus 114 ~-ip~-l~~--~L~~L~Ls~N~l-~~lp~----~l~~L~~L~Ls~N~l~~-lp~--------~l~~L~~L~Ls~N~L~~- 174 (571)
T 3cvr_A 114 T-LPE-LPA--SLKHLDVDNNQL-TMLPE----LPALLEYINADNNQLTM-LPE--------LPTSLEVLSVRNNQLTF- 174 (571)
T ss_dssp C-CCC-CCT--TCCEEECCSSCC-SCCCC----CCTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSC-
T ss_pred C-cch-hhc--CCCEEECCCCcC-CCCCC----cCccccEEeCCCCccCc-CCC--------cCCCcCEEECCCCCCCC-
Confidence 3 343 333 566666666655 23444 24556666666666554 222 24556666666666653
Q ss_pred chHHhhcccccceeecCCccccCCCccccCCCCCC-------CEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccC
Q 037539 434 IPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSL-------DFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKI 506 (622)
Q Consensus 434 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~ 506 (622)
+|. |. ++|+.|+|++|.++ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|++++|++++.+
T Consensus 175 lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 175 LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 333 33 56666666666665 3343 333 44 66666666666 35555555666666666666666554
Q ss_pred C
Q 037539 507 P 507 (622)
Q Consensus 507 p 507 (622)
|
T Consensus 247 p 247 (571)
T 3cvr_A 247 R 247 (571)
T ss_dssp H
T ss_pred H
Confidence 4
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=5.2e-19 Score=180.49 Aligned_cols=180 Identities=26% Similarity=0.240 Sum_probs=111.2
Q ss_pred CEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCcccc-CCCCccEEEccCCcccccCchhHHhhcccccEeecC
Q 037539 319 FILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLR-NFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLK 397 (622)
Q Consensus 319 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~ 397 (622)
+.++++++.++ .+|..+ .+.++.|++++|.+++..+..+. .+++|++|+|++|.+ ..++...+..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECC
Confidence 34555555555 233332 23455666666666554445554 566666666666665 33333333356666666666
Q ss_pred CCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCcccc---CCCCCCCEEeCC
Q 037539 398 SNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKI---GELTSLDFLDLS 474 (622)
Q Consensus 398 ~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~Ls 474 (622)
+|+++...+..+. .+++|+.|+|++|++.+..+..|..+++|+.|+|++|.+++..+..| ..+++|+.|+|+
T Consensus 97 ~N~l~~~~~~~~~-----~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 97 SNHLHTLDEFLFS-----DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp SSCCCEECTTTTT-----TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred CCcCCcCCHHHhC-----CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 6666554444443 56677777777777776666777777777777777777775444444 557888888888
Q ss_pred CCccCccCCccccCCCC--CCEEECcCCcCcccCC
Q 037539 475 RNLFSGSIPCSLSQLSG--LGVLDLSYNNLSGKIP 507 (622)
Q Consensus 475 ~n~l~~~~~~~l~~l~~--L~~L~ls~N~l~~~~p 507 (622)
+|++++..+..+..++. ++.|++++|++.|.+.
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 88888666666777766 4778888888877643
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2e-18 Score=170.47 Aligned_cols=173 Identities=26% Similarity=0.331 Sum_probs=140.2
Q ss_pred ccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccc
Q 037539 312 WLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNL 391 (622)
Q Consensus 312 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L 391 (622)
+..+++|+.|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+ ..++. +. .+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l-~~~~~-l~-~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV-KDLSS-LK-DLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-CCGGG-GT-TCTTC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC-CCChh-hc-cCCCC
Confidence 34677888899998888744 3 47778899999999998885433 88889999999999988 44554 33 68899
Q ss_pred cEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEE
Q 037539 392 IVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFL 471 (622)
Q Consensus 392 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 471 (622)
++|++++|++.+. + .+. .+++|+.|++++|++++. ..+..+++|+.|++++|.+++..+ +..+++|+.|
T Consensus 115 ~~L~L~~n~i~~~-~-~l~-----~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 115 KSLSLEHNGISDI-N-GLV-----HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp CEEECTTSCCCCC-G-GGG-----GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CEEECCCCcCCCC-h-hhc-----CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence 9999999988853 2 222 689999999999999854 578899999999999999986554 8899999999
Q ss_pred eCCCCccCccCCccccCCCCCCEEECcCCcCcc
Q 037539 472 DLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 472 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 504 (622)
++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 184 ~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 184 YLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 9999999854 4 48899999999999999874
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=7.6e-19 Score=165.77 Aligned_cols=156 Identities=24% Similarity=0.292 Sum_probs=137.7
Q ss_pred cEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccce
Q 037539 367 RVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIA 446 (622)
Q Consensus 367 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 446 (622)
+.++++++.+ ..+|..+. ++++.|++++|.+++..+..+. .+++|+.|+|++|.+++..|..|.++++|++
T Consensus 14 ~~v~c~~~~l-~~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~-----~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 14 NIVDCRGKGL-TEIPTNLP---ETITEIRLEQNTIKVIPPGAFS-----PYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp TEEECTTSCC-SSCCSSCC---TTCCEEECCSSCCCEECTTSST-----TCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred CEEEcCCCCc-CcCCCccC---cCCCEEECCCCcCCCcCHhHhh-----CCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 5788999988 77887653 6899999999999987776665 7999999999999999888999999999999
Q ss_pred eecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcC
Q 037539 447 LNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLE 525 (622)
Q Consensus 447 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~ 525 (622)
|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..|.. ..+..+..+.+.+|++
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 999999999777777899999999999999999999999999999999999999999665542 3467788889999999
Q ss_pred CCCCCC
Q 037539 526 LCGLPL 531 (622)
Q Consensus 526 lc~~~~ 531 (622)
.|+|+.
T Consensus 165 ~c~c~l 170 (220)
T 2v9t_B 165 ICDCHL 170 (220)
T ss_dssp ECSGGG
T ss_pred CCCCcc
Confidence 998764
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=3.2e-18 Score=182.96 Aligned_cols=189 Identities=28% Similarity=0.384 Sum_probs=133.1
Q ss_pred CCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCcccc
Q 037539 234 SKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWL 313 (622)
Q Consensus 234 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 313 (622)
.+|+.|++++|.+++ +|..+ .++|+.|++++|.+. .+| .
T Consensus 59 ~~L~~L~Ls~n~L~~---------------lp~~l---~~~L~~L~Ls~N~l~--------------------~ip---~ 97 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS---------------LPDNL---PPQITVLEITQNALI--------------------SLP---E 97 (571)
T ss_dssp TTCSEEECCSSCCSC---------------CCSCC---CTTCSEEECCSSCCS--------------------CCC---C
T ss_pred CCccEEEeCCCCCCc---------------cCHhH---cCCCCEEECcCCCCc--------------------ccc---c
Confidence 499999999999873 45433 257888888888776 233 2
Q ss_pred CCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccE
Q 037539 314 HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 314 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~ 393 (622)
.+++|++|++++|++++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+ ..+|. .+++|++
T Consensus 98 ~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l-~~lp~----~l~~L~~ 164 (571)
T 3cvr_A 98 LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQL-TMLPE----LPTSLEV 164 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC-SCCCC----CCTTCCE
T ss_pred ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCcc-CcCCC----cCCCcCE
Confidence 35677777777777775 454 443 77777777777775 444 567778888887777 34665 3667788
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhccccc-------ceeecCCccccCCCccccCCCC
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGL-------IALNLSRNHLTGPITPKIGELT 466 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~ 466 (622)
|++++|++++ +|. + . ++|+.|+|++|+++ .+|. +.. +| +.|+|++|.++ .+|..+..++
T Consensus 165 L~Ls~N~L~~-lp~-l------~-~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~ 230 (571)
T 3cvr_A 165 LSVRNNQLTF-LPE-L------P-ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLD 230 (571)
T ss_dssp EECCSSCCSC-CCC-C------C-TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSC
T ss_pred EECCCCCCCC-cch-h------h-CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCC
Confidence 8888887775 333 3 1 67788888888777 4554 443 56 88888888888 5677777788
Q ss_pred CCCEEeCCCCccCccCCccccCCC
Q 037539 467 SLDFLDLSRNLFSGSIPCSLSQLS 490 (622)
Q Consensus 467 ~L~~L~Ls~n~l~~~~~~~l~~l~ 490 (622)
+|+.|+|++|++++.+|..+..+.
T Consensus 231 ~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 231 PTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp TTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCEEEeeCCcCCCcCHHHHHHhh
Confidence 888888888888888777776543
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=3.9e-18 Score=168.31 Aligned_cols=185 Identities=21% Similarity=0.257 Sum_probs=132.1
Q ss_pred cCCcEEeCCCCCCCCC------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccE
Q 037539 33 ERLQELVLGLGKFFET------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIET 106 (622)
Q Consensus 33 ~~L~~L~L~~n~i~~~------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~ 106 (622)
.++..+++..+.+.+. ++|++|++++|.++..+ .+..+++|++|++++|.+++.. .+..+ ++|++
T Consensus 24 ~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~----~~~~l~~L~~L~L~~n~l~~~~----~l~~l-~~L~~ 94 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIK----PLANL-KNLGW 94 (291)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCG----GGTTC-TTCCE
T ss_pred HHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccCh----hHhcCCCCCEEEccCCccCCCc----ccccC-CCCCE
Confidence 3344455666655443 77788888888777664 3677888888888888887642 26667 88888
Q ss_pred EEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccC
Q 037539 107 LDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVV 186 (622)
Q Consensus 107 L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~ 186 (622)
|++++|.+++ + ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++++. .. ++.++
T Consensus 95 L~l~~n~l~~--~-------~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~-----l~~l~ 156 (291)
T 1h6t_A 95 LFLDENKVKD--L-------SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TV-----LSRLT 156 (291)
T ss_dssp EECCSSCCCC--G-------GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG-----GGGCT
T ss_pred EECCCCcCCC--C-------hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hh-----hccCC
Confidence 8888888764 2 2246778888888888888753 4577788888888888888765 33 44455
Q ss_pred CCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcc
Q 037539 187 NSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRA 248 (622)
Q Consensus 187 ~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 248 (622)
+ |++|++++|.+.+..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 157 ~-L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 157 K-LDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp T-CSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred C-CCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 5 8888888888776544 77788888888888888753 3 47778888888888887653
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=163.20 Aligned_cols=155 Identities=23% Similarity=0.235 Sum_probs=137.8
Q ss_pred cEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCCh-hhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccc
Q 037539 367 RVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPY-QFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445 (622)
Q Consensus 367 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 445 (622)
+++++++|.+ +.+|..+. +.+++|++++|.+++..+. .+. .+++|+.|+|++|.+++..+..|..+++|+
T Consensus 14 ~~l~~s~n~l-~~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~-----~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 14 TTVDCSNQKL-NKIPEHIP---QYTAELRLNNNEFTVLEATGIFK-----KLPQLRKINFSNNKITDIEEGAFEGASGVN 84 (220)
T ss_dssp TEEECCSSCC-SSCCSCCC---TTCSEEECCSSCCCEECCCCCGG-----GCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEeEeCCCCc-ccCccCCC---CCCCEEEcCCCcCCccCchhhhc-----cCCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence 5899999998 77887653 5689999999999987553 344 799999999999999988888999999999
Q ss_pred eeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCc
Q 037539 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNL 524 (622)
Q Consensus 446 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~ 524 (622)
+|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..|.. ..+..+..+.+.+|+
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 9999999999888888999999999999999999999999999999999999999999876754 456778888999999
Q ss_pred CCCCCC
Q 037539 525 ELCGLP 530 (622)
Q Consensus 525 ~lc~~~ 530 (622)
+.|+|+
T Consensus 165 l~c~c~ 170 (220)
T 2v70_A 165 FNCNCY 170 (220)
T ss_dssp EECSGG
T ss_pred CcCCCc
Confidence 999886
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=8.8e-18 Score=159.60 Aligned_cols=156 Identities=26% Similarity=0.291 Sum_probs=107.4
Q ss_pred CCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecC
Q 037539 318 LFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLK 397 (622)
Q Consensus 318 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~ 397 (622)
.+.++.+++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+ +.+|...+..+
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l--------- 87 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSL--------- 87 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTC---------
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccC---------
Confidence 456777777766 444433 26677777777777766666677777777777777776 45554443344
Q ss_pred CCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCc
Q 037539 398 SNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNL 477 (622)
Q Consensus 398 ~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 477 (622)
++|+.|+|++|++++..+..|..+++|++|+|++|.++ .+|..+..+++|++|+|++|+
T Consensus 88 --------------------~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 88 --------------------TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp --------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC
T ss_pred --------------------CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc
Confidence 44555555555555444455667777777777777777 567777788888888888888
Q ss_pred cCccCCccccCCCCCCEEECcCCcCcccCC
Q 037539 478 FSGSIPCSLSQLSGLGVLDLSYNNLSGKIP 507 (622)
Q Consensus 478 l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p 507 (622)
+++..+..|..+++|+.|++++|++.|.++
T Consensus 147 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 147 LKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 887666778888888888888888887765
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.7e-17 Score=156.23 Aligned_cols=156 Identities=26% Similarity=0.260 Sum_probs=120.6
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
..+.++.+++.+. .+|..+ .++|++|++++|++++..+..|..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 5678999998887 444433 3789999999999999889999999999999999999987777788999999999999
Q ss_pred CCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCc
Q 037539 373 KNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRN 452 (622)
Q Consensus 373 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 452 (622)
+|.+ ..++...+..+++|++|++++|+++ .+|..+..+++|+.|+|++|
T Consensus 97 ~N~l-~~l~~~~~~~l~~L~~L~Ls~N~l~------------------------------~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 97 TNQL-TVLPSAVFDRLVHLKELFMCCNKLT------------------------------ELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp SSCC-CCCCTTTTTTCTTCCEEECCSSCCC------------------------------SCCTTGGGCTTCSEEECCSS
T ss_pred CCcC-CccChhHhCcchhhCeEeccCCccc------------------------------ccCcccccCCCCCEEECCCC
Confidence 9999 5566554445666666666665554 44455566677777777777
Q ss_pred cccCCCccccCCCCCCCEEeCCCCccCccC
Q 037539 453 HLTGPITPKIGELTSLDFLDLSRNLFSGSI 482 (622)
Q Consensus 453 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 482 (622)
++++..+..|..+++|+.|++++|++....
T Consensus 146 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 146 QLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 777655566777888888888888877543
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=7.1e-18 Score=182.40 Aligned_cols=187 Identities=24% Similarity=0.291 Sum_probs=105.9
Q ss_pred CcEEEccCCcCcccCCCC---cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCc
Q 037539 275 LSYLNLSNNHFRGKLPDL---SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNR 351 (622)
Q Consensus 275 L~~L~l~~n~l~~~~~~~---~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 351 (622)
+..+.+..+.+.+..+.. .|+.|++++|.+... + .+..+++|+.|+|++|++++..+ +..+++|+.|+|++|.
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 334445555544333221 566666666666532 2 35666666666666666664433 5566666666666666
Q ss_pred CCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC
Q 037539 352 LTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD 431 (622)
Q Consensus 352 i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 431 (622)
+.+ ++ .+..+++|++|+|++|.+ ..++. +. .+++|+.|+|++|.+.+. ..+. .+++|+.|+|++|.+.
T Consensus 99 l~~-l~-~l~~l~~L~~L~Ls~N~l-~~l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~-----~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 99 IKD-LS-SLKDLKKLKSLSLEHNGI-SDING-LV-HLPQLESLYLGNNKITDI--TVLS-----RLTKLDTLSLEDNQIS 166 (605)
T ss_dssp CCC-CT-TSTTCTTCCEEECTTSCC-CCCGG-GG-GCTTCSEEECCSSCCCCC--GGGG-----SCTTCSEEECCSSCCC
T ss_pred CCC-Ch-hhccCCCCCEEEecCCCC-CCCcc-cc-CCCccCEEECCCCccCCc--hhhc-----ccCCCCEEECcCCcCC
Confidence 653 22 466666666666666666 33332 22 466666666666666543 1222 5666666666666666
Q ss_pred ccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCcc
Q 037539 432 GAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS 481 (622)
Q Consensus 432 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 481 (622)
+..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++.
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 4444 56666666666666666542 3456666666666666666543
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.5e-17 Score=154.09 Aligned_cols=152 Identities=20% Similarity=0.229 Sum_probs=95.2
Q ss_pred CCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcC
Q 037539 339 LNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLG 418 (622)
Q Consensus 339 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~ 418 (622)
+++|++|++++|.+. .++ .+..+++|++|++++|.+ ..++ .+. .+++|++|++++|++++..+..+. .++
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~-~~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~-----~l~ 112 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA-TNYN-PIS-GLSNLERLRIMGKDVTSDKIPNLS-----GLT 112 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC-SCCG-GGT-TCTTCCEEEEECTTCBGGGSCCCT-----TCT
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC-Ccch-hhh-cCCCCCEEEeECCccCcccChhhc-----CCC
Confidence 344555555555554 223 344555555555555544 2222 222 455566666666655544444443 567
Q ss_pred CccEEECCCCcCCccchHHhhcccccceeecCCcc-ccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEC
Q 037539 419 LVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNH-LTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDL 497 (622)
Q Consensus 419 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 497 (622)
+|++|++++|++++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|++++ ++ .+..+++|+.|++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYA 188 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEe
Confidence 77777777777776677778888888888888887 55 344 57788888888888888875 33 6778888888888
Q ss_pred cCCcCcc
Q 037539 498 SYNNLSG 504 (622)
Q Consensus 498 s~N~l~~ 504 (622)
++|++.+
T Consensus 189 ~~N~i~~ 195 (197)
T 4ezg_A 189 FSQTIGG 195 (197)
T ss_dssp CBC----
T ss_pred eCcccCC
Confidence 8888753
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=5.7e-18 Score=156.12 Aligned_cols=134 Identities=24% Similarity=0.256 Sum_probs=112.8
Q ss_pred cEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCCh-hhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccc
Q 037539 367 RVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPY-QFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445 (622)
Q Consensus 367 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 445 (622)
+++++++|.+ +.+|..+. +++++|++++|.+++..+. .+. .+++|++|+|++|++++..|..|..+++|+
T Consensus 11 ~~l~~s~~~l-~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP---LHTTELLLNDNELGRISSDGLFG-----RLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGG-----GCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CEEEcCCCCc-CcCccCCC---CCCCEEECCCCcCCccCCccccc-----cCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 6677777777 66776543 3778888888887765553 243 688899999999999888888999999999
Q ss_pred eeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 446 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
+|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|++|++++|++.|.++..
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 9999999999888888999999999999999999999999999999999999999999887643
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=3.7e-17 Score=166.79 Aligned_cols=151 Identities=25% Similarity=0.177 Sum_probs=72.5
Q ss_pred CcCccccCcccc-CCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccC
Q 037539 302 NLLSGGLPDCWL-HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380 (622)
Q Consensus 302 n~l~~~~~~~~~-~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 380 (622)
|.+.+..+..+. .+++|++|++++|++++..+..|..+++|++|+|++|+++...+..|..+++|++|+|++|.+. .+
T Consensus 49 N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~ 127 (361)
T 2xot_A 49 NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VV 127 (361)
T ss_dssp SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EE
T ss_pred CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc-EE
Confidence 333333333444 5555555555555555554455555555555555555555444445555555555555555552 22
Q ss_pred chhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccc--cceeecCCcccc
Q 037539 381 PTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVG--LIALNLSRNHLT 455 (622)
Q Consensus 381 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~ 455 (622)
+...+..+++|+.|+|++|++++..+..+.. ...+++|+.|+|++|++++..+..+..++. ++.|+|++|.+.
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~--~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 128 DRNAFEDMAQLQKLYLSQNQISRFPVELIKD--GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCGGGTC------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhCCcccCCEEECCCCcCCeeCHHHhcC--cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 2222224555555555555555333222210 013455555555555555444444444444 244555555443
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.6e-17 Score=151.55 Aligned_cols=154 Identities=14% Similarity=0.189 Sum_probs=93.3
Q ss_pred cCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCch
Q 037539 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPK 151 (622)
Q Consensus 72 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 151 (622)
..+++|++|++++|.++.. + .+..+ ++|++|++++|.++. + ..+..+++|++|++++|.+++..+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-~---~l~~l-~~L~~L~l~~n~~~~--~-------~~l~~l~~L~~L~l~~n~l~~~~~~ 106 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-T---GIEYA-HNIKDLTINNIHATN--Y-------NPISGLSNLERLRIMGKDVTSDKIP 106 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-T---TGGGC-TTCSEEEEESCCCSC--C-------GGGTTCTTCCEEEEECTTCBGGGSC
T ss_pred hhcCCccEEeccCCCccCh-H---HHhcC-CCCCEEEccCCCCCc--c-------hhhhcCCCCCEEEeECCccCcccCh
Confidence 4456666777776666632 2 35555 667777777765542 1 1235666777777777777665666
Q ss_pred hhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccC
Q 037539 152 FFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLS 231 (622)
Q Consensus 152 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 231 (622)
.++.+++|++|++++|.+++..+..+. .+++ |++|++++|...+.++.+..+++|++|++++|.+++. + .+.
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~-----~l~~-L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~-~-~l~ 178 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKIN-----TLPK-VNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-R-GIE 178 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHT-----TCSS-CCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCC-T-TGG
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHh-----hCCC-CCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcCh-H-Hhc
Confidence 667777777777777777665565533 3333 7777777776222334566667777777777776643 2 566
Q ss_pred CCCCCCEEEccCCCCc
Q 037539 232 QLSKLESLSLDGNSLR 247 (622)
Q Consensus 232 ~l~~L~~L~l~~n~l~ 247 (622)
.+++|++|++++|++.
T Consensus 179 ~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 179 DFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GCSSCCEEEECBC---
T ss_pred cCCCCCEEEeeCcccC
Confidence 6677777777777654
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=9.3e-17 Score=173.68 Aligned_cols=170 Identities=27% Similarity=0.340 Sum_probs=78.7
Q ss_pred CCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccE
Q 037539 314 HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 314 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~ 393 (622)
.++.|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+ ..++ .+. .+++|+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l-~~l~-~l~-~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI-KDLS-SLK-DLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC-CCCT-TST-TCTTCCE
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC-CCCh-hhc-cCCCCCE
Confidence 344455555555554422 1 24445555555555555543222 44555555555555554 2232 222 3455555
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeC
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDL 473 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 473 (622)
|+|++|.+.+. + .+. .+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|
T Consensus 114 L~Ls~N~l~~l-~-~l~-----~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 114 LSLEHNGISDI-N-GLV-----HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp EECTTSCCCCC-G-GGG-----GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred EEecCCCCCCC-c-ccc-----CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence 55555554432 1 111 345555555555555432 344455555555555555543333 444555555555
Q ss_pred CCCccCccCCccccCCCCCCEEECcCCcCc
Q 037539 474 SRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 474 s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
++|++++. + .+..+++|+.|++++|++.
T Consensus 183 s~N~i~~l-~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 183 SKNHISDL-R-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CSSCCCBC-G-GGTTCTTCSEEECCSEEEE
T ss_pred cCCCCCCC-h-HHccCCCCCEEEccCCcCc
Confidence 55555432 2 3445555555555555544
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2.5e-17 Score=159.86 Aligned_cols=167 Identities=23% Similarity=0.334 Sum_probs=94.3
Q ss_pred CCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecC
Q 037539 318 LFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLK 397 (622)
Q Consensus 318 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~ 397 (622)
+..++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+ ..++. + ..+++|++|+++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l-~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQI-SDLSP-L-KDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCC-CCCGG-G-TTCSSCCEEECC
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCcc-CCChh-h-ccCCCCCEEECC
Confidence 333444444444221 2334445555555555554 222 344555555555555555 23332 2 245555555555
Q ss_pred CCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCc
Q 037539 398 SNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNL 477 (622)
Q Consensus 398 ~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 477 (622)
+|++++..+. . . ++|+.|++++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|+
T Consensus 94 ~N~l~~l~~~--~-----~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 94 RNRLKNLNGI--P-----S-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp SSCCSCCTTC--C-----C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSC
T ss_pred CCccCCcCcc--c-----c-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCc
Confidence 5555532211 0 1 5566666666666642 2 466777777777777777653 256777777777777777
Q ss_pred cCccCCccccCCCCCCEEECcCCcCccc
Q 037539 478 FSGSIPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 478 l~~~~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
+++. ..+..+++|+.|++++|++.+.
T Consensus 162 i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 162 ITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred Ccch--HHhccCCCCCEEeCCCCcccCC
Confidence 7755 4577777788888888877644
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=4.2e-17 Score=158.30 Aligned_cols=168 Identities=20% Similarity=0.286 Sum_probs=135.5
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
.+..++++++.+.+.. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444555566655432 56788899999999999884 44 67889999999999999985543 8899999999999
Q ss_pred CCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCc
Q 037539 373 KNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRN 452 (622)
Q Consensus 373 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 452 (622)
+|.+ ..+|... . ++|+.|++++|++++. + .+. .+++|+.|++++|++++. + .+..+++|++|++++|
T Consensus 94 ~N~l-~~l~~~~--~-~~L~~L~L~~N~l~~~-~-~l~-----~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 94 RNRL-KNLNGIP--S-ACLSRLFLDNNELRDT-D-SLI-----HLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp SSCC-SCCTTCC--C-SSCCEEECCSSCCSBS-G-GGT-----TCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTS
T ss_pred CCcc-CCcCccc--c-CcccEEEccCCccCCC-h-hhc-----CcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCC
Confidence 9998 5565432 2 8999999999999864 2 233 799999999999999854 4 6889999999999999
Q ss_pred cccCCCccccCCCCCCCEEeCCCCccCcc
Q 037539 453 HLTGPITPKIGELTSLDFLDLSRNLFSGS 481 (622)
Q Consensus 453 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 481 (622)
.+++. ..+..+++|+.|++++|+++..
T Consensus 161 ~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 161 EITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 99975 7788999999999999999855
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=8.8e-17 Score=148.15 Aligned_cols=176 Identities=22% Similarity=0.229 Sum_probs=102.0
Q ss_pred cEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccE
Q 037539 343 WTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRC 422 (622)
Q Consensus 343 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~ 422 (622)
+++++++|.++ .+|..+. ++|++|++++|.+.+..+...+..+++|++|++++|++++..|..+. .+++|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-----GASHIQE 82 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-----TCTTCCE
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC-----CcccCCE
Confidence 34444444443 3333222 24555555555552222222233456666666666666655555544 5677777
Q ss_pred EECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCcc-ccCCCCCCEEECcCCc
Q 037539 423 LDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCS-LSQLSGLGVLDLSYNN 501 (622)
Q Consensus 423 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~ls~N~ 501 (622)
|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|++|+|++|++.+..+.. +. ..++...+.++.
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~ 160 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGA 160 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGG
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCC
Confidence 777777777666667778888888888888888777888888888999999999888654321 11 112222344455
Q ss_pred CcccCCCCCcCCccCcccccCCcCCCCCC
Q 037539 502 LSGKIPSGTQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 502 l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 530 (622)
..|..|.. +.......+..+...|..+
T Consensus 161 ~~C~~P~~--l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 161 ARCGAPSK--VRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp CBBCSSTT--TTTSBGGGSCTTTCCCCCC
T ss_pred CCCCCChH--HcCCChhhCcHhhcCcCCC
Confidence 55555542 3333334444554555433
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=9.2e-17 Score=161.71 Aligned_cols=184 Identities=11% Similarity=0.052 Sum_probs=85.2
Q ss_pred ccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCc----CCCCCCccccCCCCcc-EEEccCCcccccCchhH
Q 037539 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNR----LTGKLPSPLRNFSQLR-VLDLEKNAIFGEIPTWI 384 (622)
Q Consensus 310 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~l~~l~~L~-~L~L~~n~i~~~~~~~~ 384 (622)
.+|.+|++|+.+++++|.+....+.+|..+.++..+....+. .......+|..+..|+ .+.+... +.++..+
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~ 194 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEI 194 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHH
T ss_pred HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHH
Confidence 445555666666666665555555555555555555443321 1222333455555555 4444332 2223322
Q ss_pred Hhh---cccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccc
Q 037539 385 GES---LQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPK 461 (622)
Q Consensus 385 ~~~---l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 461 (622)
+.. ..+++.+.+.++-.. .-...+...+++|+.++|++|+++.....+|.++.+|+++++.+| ++...+.+
T Consensus 195 ~~~~~~~~~~~~l~~~~~l~~-----~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~a 268 (329)
T 3sb4_A 195 MKAGLQPRDINFLTIEGKLDN-----ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRV 268 (329)
T ss_dssp HHTTCCGGGCSEEEEEECCCH-----HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred hhcccCccccceEEEeeeecH-----HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHH
Confidence 211 233444444332111 000011113455555555555555444445555555555555554 44344445
Q ss_pred cCCCCCCC-EEeCCCCccCccCCccccCCCCCCEEECcCCcCc
Q 037539 462 IGELTSLD-FLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 462 l~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|++.
T Consensus 269 F~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 269 FSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp TTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred hhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 55555555 555555 444444455555555555555555554
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=5.1e-17 Score=180.24 Aligned_cols=193 Identities=24% Similarity=0.306 Sum_probs=123.6
Q ss_pred EEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCc
Q 037539 296 FDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNA 375 (622)
Q Consensus 296 ~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 375 (622)
.++++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.
T Consensus 205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 3444455544 55778899999999999999998 66666778999999999999999 888899999999999999999
Q ss_pred ccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhccccc-ceeecCCccc
Q 037539 376 IFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGL-IALNLSRNHL 454 (622)
Q Consensus 376 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l 454 (622)
+ ..+|..+. .+++|++|+|++|.++ .+|..+. .+++|+.|+|++|.+++.+|..+..+... ..++|++|.+
T Consensus 282 l-~~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~-----~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 282 L-TSLPAELG-SCFQLKYFYFFDNMVT-TLPWEFG-----NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp C-SSCCSSGG-GGTTCSEEECCSSCCC-CCCSSTT-----SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred C-CccChhhc-CCCCCCEEECCCCCCC-ccChhhh-----cCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 9 58898877 7999999999999997 5565565 79999999999999999999888765432 3588999999
Q ss_pred cCCCccccCCCCCCCEEeCCCC--------ccCccCCccccCCCCCCEEECcCCcCccc
Q 037539 455 TGPITPKIGELTSLDFLDLSRN--------LFSGSIPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 455 ~~~~~~~l~~l~~L~~L~Ls~n--------~l~~~~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
++.+|. .|+.|++++| .+.+..+..+..+..+....+++|-+.+.
T Consensus 354 ~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 354 EIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQH 406 (727)
T ss_dssp CCCCCC------C-----------------------------------------CCCGG
T ss_pred cCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccccc
Confidence 987776 4556677777 34444444556666777788888887643
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=1.6e-18 Score=186.46 Aligned_cols=108 Identities=21% Similarity=0.212 Sum_probs=59.6
Q ss_pred ccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccC-chhHHhhccc
Q 037539 312 WLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI-PTWIGESLQN 390 (622)
Q Consensus 312 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~~l~~ 390 (622)
+..+++|+.|++++|+++ .+|..++.+++|+.|++++|.+++ +| .++.+++|++|++++|.+.+.. |..+. .+++
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~-~l~~ 534 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLV-SCPR 534 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG-GCTT
T ss_pred ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh-cCCC
Confidence 555556666666666665 445555666666666666666653 34 5556666666666666663333 44444 4666
Q ss_pred ccEeecCCCcCcccCChhhhHhHhhhcCCccEEEC
Q 037539 391 LIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDL 425 (622)
Q Consensus 391 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L 425 (622)
|+.|++++|++++.++... .....+++|+.|++
T Consensus 535 L~~L~L~~N~l~~~~~~~~--~l~~~lp~L~~L~l 567 (567)
T 1dce_A 535 LVLLNLQGNSLCQEEGIQE--RLAEMLPSVSSILT 567 (567)
T ss_dssp CCEEECTTSGGGGSSSCTT--HHHHHCTTCSEEEC
T ss_pred CCEEEecCCcCCCCccHHH--HHHHHCcccCccCC
Confidence 6666666666655444221 11224566666653
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=9.2e-17 Score=161.70 Aligned_cols=102 Identities=14% Similarity=0.053 Sum_probs=58.8
Q ss_pred CCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCcc-EEEccCCcccccCchhHHhhcccccE
Q 037539 315 FDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLR-VLDLEKNAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 315 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~-~L~L~~n~i~~~~~~~~~~~l~~L~~ 393 (622)
+++|+.+++++|+++.....+|.++.+|++|++.+| +....+.+|.++++|+ .+++.+ .+ ..++...|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l-~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV-TAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC-CEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc-eEEchhhhhCCccCCE
Confidence 455666666666665555555666666666666655 4445555566666666 666655 33 4455555555666666
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEE
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLD 424 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~ 424 (622)
+++++|+++...+..|. ++++|+.++
T Consensus 302 l~l~~n~i~~I~~~aF~-----~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFG-----NGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTC-----TTCCCCEEE
T ss_pred EEeCCCccCccchhhhc-----CCcchhhhc
Confidence 66666666555444444 556666554
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=145.58 Aligned_cols=165 Identities=21% Similarity=0.210 Sum_probs=123.1
Q ss_pred cEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccce
Q 037539 367 RVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIA 446 (622)
Q Consensus 367 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 446 (622)
+++++++|.+ ..+|..+ .++|++|++++|.++ .+|..+. .+++|+.|+|++|.+++..+..|.++++|++
T Consensus 13 ~~l~~~~~~l-~~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~-----~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGL-KVLPKGI---PRDVTELYLDGNQFT-LVPKELS-----NYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TEEECTTSCC-SSCCSCC---CTTCCEEECCSSCCC-SCCGGGG-----GCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEEcCCCCC-CcCCCCC---CCCCCEEECCCCcCc-hhHHHhh-----cccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence 4677777776 5666554 257777777777776 4444443 6888888888888888777788999999999
Q ss_pred eecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCC
Q 037539 447 LNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLEL 526 (622)
Q Consensus 447 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~l 526 (622)
|+|++|.+++..+..|..+++|++|+|++|+++...+..|..+++|+.|++++|++.|.++.. .+........
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~----~l~~~~~~~~--- 155 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ----WLSDWVKSEY--- 155 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH----HHHHHHHHSS---
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH----HHHHHHHhcc---
Confidence 999999999888888999999999999999999777778999999999999999999875532 2221111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 037539 527 CGLPLANMCLDEESTPGPGTDDD 549 (622)
Q Consensus 527 c~~~~~~~C~~~~~~~~~~~~~~ 549 (622)
..+....|..|...+|....+.
T Consensus 156 -~~~~~~~C~~P~~l~g~~l~~~ 177 (193)
T 2wfh_A 156 -KEPGIARCAGPGEMADKLLLTT 177 (193)
T ss_dssp -CCCSCCBEEESGGGTTCBTTTS
T ss_pred -CCCCCcCcCCchHHCCCCcccC
Confidence 1122346888887777665444
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=2.8e-18 Score=184.55 Aligned_cols=185 Identities=23% Similarity=0.252 Sum_probs=147.0
Q ss_pred cCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCc-------------CCCCCCccccCCCCccEEE-ccCCcccc
Q 037539 313 LHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNR-------------LTGKLPSPLRNFSQLRVLD-LEKNAIFG 378 (622)
Q Consensus 313 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-------------i~~~~~~~l~~l~~L~~L~-L~~n~i~~ 378 (622)
..++.|+.|++++|+++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+ .
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-D 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-H
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-c
Confidence 45677888888888887 667777888888888876664 4456667778888888888 666654 2
Q ss_pred cCchh------HHh-hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCC
Q 037539 379 EIPTW------IGE-SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSR 451 (622)
Q Consensus 379 ~~~~~------~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 451 (622)
.++.. +.. ....|+.|++++|.+++ +|. +. .+++|+.|+|++|.++ .+|..++.+++|+.|+|++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~-----~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LE-----QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GG-----GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-cc-----ccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence 23221 110 12368999999999986 443 44 7999999999999999 7888999999999999999
Q ss_pred ccccCCCccccCCCCCCCEEeCCCCccCccC-CccccCCCCCCEEECcCCcCcccCCCC
Q 037539 452 NHLTGPITPKIGELTSLDFLDLSRNLFSGSI-PCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 452 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
|.+++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|++++|++++..|..
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 99996 56 8999999999999999999876 899999999999999999999776643
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=1.4e-16 Score=176.84 Aligned_cols=189 Identities=21% Similarity=0.249 Sum_probs=107.1
Q ss_pred eecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccE
Q 037539 217 LDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRF 296 (622)
Q Consensus 217 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~ 296 (622)
+..|.+. ..+..+..++.|+.|+|++|.+. .+|..++. +++|++|+|++|.+.
T Consensus 208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~---------------~l~~~~~~-l~~L~~L~Ls~N~l~---------- 260 (727)
T 4b8c_D 208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIF---------------NISANIFK-YDFLTRLYLNGNSLT---------- 260 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS---------------CCCGGGGG-CCSCSCCBCTTSCCS----------
T ss_pred cccccee-cChhhhccCCCCcEEECCCCCCC---------------CCChhhcC-CCCCCEEEeeCCcCc----------
Confidence 3344444 45666777788888888888776 45555553 346666666666554
Q ss_pred EeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcc
Q 037539 297 DDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAI 376 (622)
Q Consensus 297 L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i 376 (622)
.+|..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.+
T Consensus 261 ----------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 261 ----------ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp ----------CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred ----------ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence 56677888889999999999998 67888889999999999999987 6777799999999999999999
Q ss_pred cccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCC--------cCCccchHHhhcccccceee
Q 037539 377 FGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSN--------KLDGAIPEEIMDLVGLIALN 448 (622)
Q Consensus 377 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~ 448 (622)
.+.+|..+...-..+..+++++|.+++.+|. .|+.|++++| .+.+..+..+..+..+....
T Consensus 329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-----------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 397 (727)
T 4b8c_D 329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-----------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTV 397 (727)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----------C-------------------------------------
T ss_pred CCCChHHHhhcchhhhHHhhccCcccCcCcc-----------ccceeEeecccccccccCCccccccchhhcccccceee
Confidence 7777776653222334578888988876654 3456666666 23323333444555555666
Q ss_pred cCCcccc
Q 037539 449 LSRNHLT 455 (622)
Q Consensus 449 L~~n~l~ 455 (622)
+++|-+.
T Consensus 398 ls~Nil~ 404 (727)
T 4b8c_D 398 LSYNTLC 404 (727)
T ss_dssp ----CCC
T ss_pred eeccccc
Confidence 6666553
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.4e-15 Score=136.93 Aligned_cols=132 Identities=25% Similarity=0.206 Sum_probs=87.1
Q ss_pred CCccEEEccCCccc-ccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhccc
Q 037539 364 SQLRVLDLEKNAIF-GEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLV 442 (622)
Q Consensus 364 ~~L~~L~L~~n~i~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 442 (622)
++|++|++++|.+. +.+|..+. .+++|++|++++|.+++. ..+. .+++|++|++++|.+.+.+|..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLP-----KLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCC-----CCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhc-----cCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 45555555555553 24544433 456666666666665543 2222 566777777777777765666667777
Q ss_pred ccceeecCCccccCCC-ccccCCCCCCCEEeCCCCccCccCC---ccccCCCCCCEEECcCCcCc
Q 037539 443 GLIALNLSRNHLTGPI-TPKIGELTSLDFLDLSRNLFSGSIP---CSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 443 ~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~ls~N~l~ 503 (622)
+|++|++++|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888888888777532 2667778888888888888875544 46778888888888888776
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=3.3e-15 Score=135.73 Aligned_cols=134 Identities=23% Similarity=0.210 Sum_probs=103.8
Q ss_pred ccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccc
Q 037539 366 LRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445 (622)
Q Consensus 366 L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 445 (622)
.+.++++++.+ ..+|..+ .++|+.|++++|++++..+..+. .+++|++|++++|.+++..+..|..+++|+
T Consensus 9 ~~~l~~~~~~l-~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 9 GTEIRCNSKGL-TSVPTGI---PSSATRLELESNKLQSLPHGVFD-----KLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79 (177)
T ss_dssp TTEEECCSSCC-SSCCTTC---CTTCSEEECCSSCCCCCCTTTTT-----TCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEEEecCCCC-ccCCCCC---CCCCcEEEeCCCcccEeCHHHhc-----CcccccEEECCCCcceEeChhHccCCCccC
Confidence 35666666666 5555443 35677777777777655554443 577888888888888866666778899999
Q ss_pred eeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 446 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
+|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.|.+|.
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred EEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 999999999877777788999999999999999977776678899999999999999987763
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=5.5e-15 Score=132.99 Aligned_cols=86 Identities=31% Similarity=0.352 Sum_probs=59.5
Q ss_pred CCCCCEEEccCCccc-ccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccE
Q 037539 315 FDRLFILNLANNRLS-GKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 315 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~ 393 (622)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+. .+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE-KLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH-HCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh-hCCCCCE
Confidence 356788888888776 56666677777888888888887754 5677777778888877777444554433 4666666
Q ss_pred eecCCCcCcc
Q 037539 394 LSLKSNKFHG 403 (622)
Q Consensus 394 L~L~~n~l~~ 403 (622)
|++++|++++
T Consensus 100 L~Ls~N~l~~ 109 (168)
T 2ell_A 100 LNLSGNKLKD 109 (168)
T ss_dssp EECBSSSCCS
T ss_pred EeccCCccCc
Confidence 6666666653
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.4e-15 Score=132.46 Aligned_cols=83 Identities=25% Similarity=0.246 Sum_probs=52.5
Q ss_pred hcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCC-CccccCCCCCCCEEeCCCCccCccCC---ccccCCCC
Q 037539 416 TLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGP-ITPKIGELTSLDFLDLSRNLFSGSIP---CSLSQLSG 491 (622)
Q Consensus 416 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~ 491 (622)
.+++|+.|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++
T Consensus 62 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 62 KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ 141 (149)
T ss_dssp CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT
T ss_pred cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC
Confidence 455566666666666655566666666666666666666642 23566667777777777777765544 45666777
Q ss_pred CCEEECc
Q 037539 492 LGVLDLS 498 (622)
Q Consensus 492 L~~L~ls 498 (622)
|+.||++
T Consensus 142 L~~L~l~ 148 (149)
T 2je0_A 142 LTYLDGY 148 (149)
T ss_dssp CCEETTB
T ss_pred cccccCC
Confidence 7777665
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=1.1e-14 Score=128.28 Aligned_cols=126 Identities=23% Similarity=0.220 Sum_probs=72.1
Q ss_pred CCCCEEEccCCccc-ccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEe
Q 037539 316 DRLFILNLANNRLS-GKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVL 394 (622)
Q Consensus 316 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L 394 (622)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+. .+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCCCEE
Confidence 56777777777776 55666666777777777777777644 5566677777777777776444544333 46666666
Q ss_pred ecCCCcCcccC-ChhhhHhHhhhcCCccEEECCCCcCCccch---HHhhcccccceeec
Q 037539 395 SLKSNKFHGNI-PYQFENEYKSTLGLVRCLDLSSNKLDGAIP---EEIMDLVGLIALNL 449 (622)
Q Consensus 395 ~L~~n~l~~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L 449 (622)
++++|++++.. +..+. .+++|++|++++|++++..+ ..+..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~-----~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLK-----KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGG-----GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHh-----hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 66666655321 11121 44455555555555543332 23444444444444
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=7.5e-14 Score=143.42 Aligned_cols=240 Identities=10% Similarity=0.053 Sum_probs=132.7
Q ss_pred cCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchh
Q 037539 189 LEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDW 267 (622)
Q Consensus 189 L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~ 267 (622)
|+.+.+..+ ++..... |.++ +|+.+.+.. .++.+...+|..+++|+.+++.+|.++ .++..
T Consensus 137 L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~---------------~I~~~ 198 (401)
T 4fdw_A 137 IAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT---------------KLPAS 198 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS---------------EECTT
T ss_pred ccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce---------------Eechh
Confidence 555555544 3333333 4443 466666654 455455566666777777777666665 33333
Q ss_pred HHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEee
Q 037539 268 FWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNL 347 (622)
Q Consensus 268 ~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 347 (622)
.+.. .+|+.+.+..+ +......+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+
T Consensus 199 aF~~-~~L~~l~lp~~--------------------l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 199 TFVY-AGIEEVLLPVT--------------------LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp TTTT-CCCSEEECCTT--------------------CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred hEee-cccCEEEeCCc--------------------hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence 3332 35555554422 22234456667777777777654 44444555655 56777777
Q ss_pred eCCcCCCCCCccccCCCCccEEEccCCccc----ccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEE
Q 037539 348 HNNRLTGKLPSPLRNFSQLRVLDLEKNAIF----GEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCL 423 (622)
Q Consensus 348 s~n~i~~~~~~~l~~l~~L~~L~L~~n~i~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L 423 (622)
. +.++.....+|.+|++|+.+++.++.+. ..++...|.++++|+.+.
T Consensus 256 p-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~---------------------------- 306 (401)
T 4fdw_A 256 P-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFE---------------------------- 306 (401)
T ss_dssp E-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEEC----------------------------
T ss_pred C-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEE----------------------------
Confidence 3 3354455566777777777777666541 124444444444444444
Q ss_pred ECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCC-CCCEEECcCCcC
Q 037539 424 DLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLS-GLGVLDLSYNNL 502 (622)
Q Consensus 424 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~ls~N~l 502 (622)
+.+ .++.....+|.++.+|+.+.|..+ ++.....+|.++ +|+.+++++|.+....+..|.+++ .++.|.+..+.+
T Consensus 307 -l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 307 -IPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -CCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -eCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 442 243344455666666666666443 444445566666 677777776666655555666663 566666665543
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=7e-14 Score=143.66 Aligned_cols=184 Identities=11% Similarity=0.052 Sum_probs=143.9
Q ss_pred ccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHh
Q 037539 307 GLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGE 386 (622)
Q Consensus 307 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 386 (622)
....+|.+|++|+.+++++|+++......|. ..+|+.+.+..+ +......+|.++++|+.+++..+ + ..++...|.
T Consensus 171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l-~~I~~~aF~ 246 (401)
T 4fdw_A 171 LKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-V-STIGQEAFR 246 (401)
T ss_dssp ECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-C-CEECTTTTT
T ss_pred ehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-c-cCccccccc
Confidence 4456778888888888888888866666666 578888888754 66566778888888888888875 3 566677775
Q ss_pred hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC-----ccchHHhhcccccceeecCCccccCCCccc
Q 037539 387 SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD-----GAIPEEIMDLVGLIALNLSRNHLTGPITPK 461 (622)
Q Consensus 387 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 461 (622)
+ .+|+.+.+. +.++......|. .+++|+.+++.++.+. .....+|.+|++|+.+++.+ .++.....+
T Consensus 247 ~-~~L~~i~lp-~~i~~I~~~aF~-----~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a 318 (401)
T 4fdw_A 247 E-SGITTVKLP-NGVTNIASRAFY-----YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGL 318 (401)
T ss_dssp T-CCCSEEEEE-TTCCEECTTTTT-----TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTT
T ss_pred c-CCccEEEeC-CCccEEChhHhh-----CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhh
Confidence 4 788888884 445545555554 7888999998887664 45677899999999999994 577677789
Q ss_pred cCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcc
Q 037539 462 IGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 462 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 504 (622)
|.++++|+.++|..| ++.....+|.++ +|+.+++++|....
T Consensus 319 F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 319 LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 999999999999665 776788899999 99999999998763
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=4.2e-14 Score=130.08 Aligned_cols=127 Identities=21% Similarity=0.277 Sum_probs=81.3
Q ss_pred EEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEE
Q 037539 344 TLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCL 423 (622)
Q Consensus 344 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L 423 (622)
.++++++.++ .+|..+. ++|++|++++|.+ ..+|..+. .+++|++|++++|.+++..+..+. .+++|++|
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~-~l~~L~~L~Ls~N~i~~i~~~~f~-----~l~~L~~L 83 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQF-TLVPKELS-NYKHLTLIDLSNNRISTLSNQSFS-----NMTQLLTL 83 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCC-CSCCGGGG-GCTTCCEEECCSSCCCCCCTTTTT-----TCTTCCEE
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcC-chhHHHhh-cccCCCEEECCCCcCCEeCHhHcc-----CCCCCCEE
Confidence 4444444444 2332221 3455555555555 34553332 455666666666666554444444 56777777
Q ss_pred ECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCc
Q 037539 424 DLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSG 480 (622)
Q Consensus 424 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 480 (622)
+|++|.+++..+..|..+++|++|+|++|.++...+..|..+++|+.|+|++|++..
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 777777776666777888888888888888886666678888888888888888864
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.53 E-value=2.5e-13 Score=140.13 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=23.9
Q ss_pred cCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCC
Q 037539 417 LGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLS 474 (622)
Q Consensus 417 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 474 (622)
+.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++.....+|.++++|+.+++.
T Consensus 319 c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 319 CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 444444444322 33233334444445555444433 333333444445555555443
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.53 E-value=1.2e-13 Score=142.47 Aligned_cols=235 Identities=13% Similarity=0.089 Sum_probs=139.3
Q ss_pred ccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCc
Q 037539 182 FGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGI 260 (622)
Q Consensus 182 l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 260 (622)
|..+.+ |+.+.+.++.. ..... |.++.+|+.+.+..+ ++.+...+|..+..|+.+.+..+...
T Consensus 158 F~~c~~-L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~------------- 221 (394)
T 4fs7_A 158 FATCES-LEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY------------- 221 (394)
T ss_dssp TTTCTT-CCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-------------
T ss_pred hcccCC-CcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-------------
Confidence 334444 66666654322 12222 556666666666544 33344455666666666555444321
Q ss_pred ccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCC
Q 037539 261 SDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLN 340 (622)
Q Consensus 261 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~ 340 (622)
+.+..+.. ..|+.+.+... +......+|..+..++.+.+..+... .....|..+.
T Consensus 222 ---i~~~~~~~-~~l~~i~ip~~--------------------~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~ 276 (394)
T 4fs7_A 222 ---LGDFALSK-TGVKNIIIPDS--------------------FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCS 276 (394)
T ss_dssp ---ECTTTTTT-CCCCEEEECTT--------------------CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCT
T ss_pred ---eehhhccc-CCCceEEECCC--------------------ceecccccccccccceeEEcCCCcce-eecccccccc
Confidence 11111111 24444444322 11233456677778888887766443 5556677777
Q ss_pred CccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCc
Q 037539 341 NIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLV 420 (622)
Q Consensus 341 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 420 (622)
.++.+......+. ...|..+.+|+.+.+..+ + ..++...|.++.+|+.+++.++ ++......|. ++.+|
T Consensus 277 ~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i-~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~-----~c~~L 345 (394)
T 4fs7_A 277 GLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-V-KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR-----GCTSL 345 (394)
T ss_dssp TCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-C-CEECTTTTTTCTTCCEECCCTT-CCEECTTTTT-----TCTTC
T ss_pred ccceeccCceeec---cccccccccccccccccc-c-ceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc-----CCCCC
Confidence 8888777665432 346777888888888765 3 5666666767888888888644 5444444444 78888
Q ss_pred cEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEE
Q 037539 421 RCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFL 471 (622)
Q Consensus 421 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 471 (622)
+.+++..+ ++.....+|.++.+|+.+++..+ +. .+...|.++++|+.+
T Consensus 346 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 346 SNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 88888766 66566678888888988888655 33 334567777777654
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=3.8e-14 Score=128.49 Aligned_cols=134 Identities=22% Similarity=0.252 Sum_probs=90.0
Q ss_pred ccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhh
Q 037539 360 LRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIM 439 (622)
Q Consensus 360 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 439 (622)
+..+++|++|++++|.+ ..++. +....++|++|++++|.+++. ..+. .+++|+.|++++|.+++..+..+.
T Consensus 15 ~~~~~~L~~L~l~~n~l-~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~-----~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKI-PVIEN-LGATLDQFDAIDFSDNEIRKL--DGFP-----LLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp EECTTSCEEEECTTSCC-CSCCC-GGGGTTCCSEEECCSSCCCEE--CCCC-----CCSSCCEEECCSSCCCEECSCHHH
T ss_pred cCCcCCceEEEeeCCCC-chhHH-hhhcCCCCCEEECCCCCCCcc--cccc-----cCCCCCEEECCCCcccccCcchhh
Confidence 44556666666666666 34443 232233667777777766643 1222 577777778887777755445557
Q ss_pred cccccceeecCCccccCCCcc--ccCCCCCCCEEeCCCCccCccCCcc----ccCCCCCCEEECcCCcCcc
Q 037539 440 DLVGLIALNLSRNHLTGPITP--KIGELTSLDFLDLSRNLFSGSIPCS----LSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 440 ~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~ls~N~l~~ 504 (622)
.+++|++|++++|.++ .+|. .+..+++|+.|++++|+++ .+|.. +..+++|+.||+++|....
T Consensus 86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 86 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 7888888888888886 3444 6778888888888888887 44553 7788888888888887653
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=1.8e-13 Score=124.25 Aligned_cols=111 Identities=21% Similarity=0.270 Sum_probs=52.8
Q ss_pred CCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeec
Q 037539 317 RLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSL 396 (622)
Q Consensus 317 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L 396 (622)
+|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+ ..++...+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-QSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc-cccCHHHhhCCcccCEEEC
Confidence 445555555555444334444455555555555555444444444555555555555555 2333332224455555555
Q ss_pred CCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCcc
Q 037539 397 KSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA 433 (622)
Q Consensus 397 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 433 (622)
++|++++..+..+. .+++|++|++++|++.+.
T Consensus 108 ~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTNQLKSVPDGIFD-----RLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCSCCCTTTTT-----TCTTCCEEECCSSCBCCC
T ss_pred cCCcceEeCHHHhc-----CCcccCEEEecCCCeecc
Confidence 55555433332222 355555555555555543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=1.1e-15 Score=141.51 Aligned_cols=132 Identities=26% Similarity=0.270 Sum_probs=85.0
Q ss_pred cccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHh
Q 037539 359 PLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEI 438 (622)
Q Consensus 359 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 438 (622)
.+..+++|++|++++|.+ ..+| .+. .+++|++|++++|.++ .+|..+. .+++|+.|++++|++++ +| .+
T Consensus 43 ~~~~l~~L~~L~ls~n~l-~~l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~-----~~~~L~~L~L~~N~l~~-l~-~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNI-EKIS-SLS-GMENLRILSLGRNLIK-KIENLDA-----VADTLEELWISYNQIAS-LS-GI 111 (198)
T ss_dssp HHHHTTTCSEEECSEEEE-SCCC-CHH-HHTTCCEEEEEEEEEC-SCSSHHH-----HHHHCSEEEEEEEECCC-HH-HH
T ss_pred HHhcCCCCCEEECCCCCC-cccc-ccc-cCCCCCEEECCCCCcc-cccchhh-----cCCcCCEEECcCCcCCc-CC-cc
Confidence 556666666666666666 3355 333 5666666666666665 3333322 45667777777777764 34 56
Q ss_pred hcccccceeecCCccccCCCc-cccCCCCCCCEEeCCCCccCccCCcc----------ccCCCCCCEEECcCCcCc
Q 037539 439 MDLVGLIALNLSRNHLTGPIT-PKIGELTSLDFLDLSRNLFSGSIPCS----------LSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 439 ~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~----------l~~l~~L~~L~ls~N~l~ 503 (622)
..+++|+.|++++|.+++..+ ..+..+++|++|++++|++++..|.. +..+++|+.|| +|+++
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 777777788888777774332 46777788888888888777655542 67788888876 66654
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.4e-13 Score=124.64 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=77.2
Q ss_pred cccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhccc
Q 037539 311 CWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQN 390 (622)
Q Consensus 311 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 390 (622)
.+..+.+|+.|++++|+++. ++......++|++|++++|.+++. ..+..+++|++|++++|.+ ..+|..++..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcc-cccCcchhhcCCC
Confidence 34566677777777777773 343222233777777777777643 4666777777777777777 4455554445666
Q ss_pred ccEeecCCCcCcccCC-hhhhHhHhhhcCCccEEECCCCcCCccchH----HhhcccccceeecCCccc
Q 037539 391 LIVLSLKSNKFHGNIP-YQFENEYKSTLGLVRCLDLSSNKLDGAIPE----EIMDLVGLIALNLSRNHL 454 (622)
Q Consensus 391 L~~L~L~~n~l~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l 454 (622)
|++|++++|++....+ ..+. .+++|+.|++++|++. ..|. .+..+++|+.|++++|..
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~-----~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLA-----SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGG-----GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCCcchhhHhhh-----cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 7777777666642221 0222 4555555555555555 2232 245555555555555544
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=1.2e-15 Score=141.41 Aligned_cols=156 Identities=22% Similarity=0.239 Sum_probs=111.4
Q ss_pred ccCCCCCCEEEccCCcccccCCC------ccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHH
Q 037539 312 WLHFDRLFILNLANNRLSGKIPD------SMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIG 385 (622)
Q Consensus 312 ~~~~~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~ 385 (622)
+.....++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+ ..+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLI-KKIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEE-CSCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCc-ccccchhh
Confidence 33445566666666666655554 67777888888888888874 55 777788888888888887 56776554
Q ss_pred hhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccch-HHhhcccccceeecCCccccCCCcc----
Q 037539 386 ESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIP-EEIMDLVGLIALNLSRNHLTGPITP---- 460 (622)
Q Consensus 386 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---- 460 (622)
.+++|++|++++|++++. | .+ ..+++|+.|++++|++++..+ ..+..+++|++|++++|.+++..|.
T Consensus 91 -~~~~L~~L~L~~N~l~~l-~-~~-----~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 162 (198)
T 1ds9_A 91 -VADTLEELWISYNQIASL-S-GI-----EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162 (198)
T ss_dssp -HHHHCSEEEEEEEECCCH-H-HH-----HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTH
T ss_pred -cCCcCCEEECcCCcCCcC-C-cc-----ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccch
Confidence 578888888888888752 2 22 267888888888888874332 4678888888888888888765443
Q ss_pred ------ccCCCCCCCEEeCCCCccCc
Q 037539 461 ------KIGELTSLDFLDLSRNLFSG 480 (622)
Q Consensus 461 ------~l~~l~~L~~L~Ls~n~l~~ 480 (622)
.+..+++|+.|| +|.++.
T Consensus 163 ~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 163 SEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHHHHHHhCCCcEEEC--CcccCH
Confidence 267788888887 676663
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.46 E-value=9.8e-15 Score=148.57 Aligned_cols=165 Identities=18% Similarity=0.145 Sum_probs=105.0
Q ss_pred CCccEEeeeCCcCCCCCCcc----cc-CCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHh
Q 037539 340 NNIWTLNLHNNRLTGKLPSP----LR-NFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYK 414 (622)
Q Consensus 340 ~~L~~L~Ls~n~i~~~~~~~----l~-~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 414 (622)
+.|+.|++++|.++...... +. ..++|++|+|++|.+.+.....+...+++|+.|+|++|.+++.....+.....
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 44556666666654322222 22 22577777777777744444444445667788888888776555554443333
Q ss_pred hhcCCccEEECCCCcCCcc----chHHhhcccccceeecCCccccCCC----ccccCCCCCCCEEeCCCCccCcc----C
Q 037539 415 STLGLVRCLDLSSNKLDGA----IPEEIMDLVGLIALNLSRNHLTGPI----TPKIGELTSLDFLDLSRNLFSGS----I 482 (622)
Q Consensus 415 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~----~ 482 (622)
...+.|++|+|++|.+++. ++..+..+++|++|+|++|.+++.. +..+...++|++|+|++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 3467788888888877642 3444566778888888888876533 44566677888888888888753 3
Q ss_pred CccccCCCCCCEEECcCCcCcc
Q 037539 483 PCSLSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 483 ~~~l~~l~~L~~L~ls~N~l~~ 504 (622)
+..+...++|++|++++|++..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 3344566788888888888763
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=3.2e-13 Score=121.44 Aligned_cols=111 Identities=20% Similarity=0.173 Sum_probs=91.3
Q ss_pred cccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCC
Q 037539 390 NLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD 469 (622)
Q Consensus 390 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 469 (622)
..+.+++++|.++. +|..+ .+.++.|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~-------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI-------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC-------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEeCCCCcCc-cCccC-------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence 34567777777664 33222 36678888888888877788888999999999999999977777889999999
Q ss_pred EEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 470 FLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 470 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
+|+|++|++++..+..|..+++|++|++++|++.|.++.
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 999999999987777899999999999999999988763
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=8.2e-13 Score=119.15 Aligned_cols=108 Identities=22% Similarity=0.212 Sum_probs=85.1
Q ss_pred cEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEE
Q 037539 392 IVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFL 471 (622)
Q Consensus 392 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 471 (622)
+.+++++|.++ .+|..+ .+.|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~-------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI-------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCS-SCCSCC-------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCCCCCC-ccCCCc-------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 55666666664 333322 3567788888888877777788888999999999999987666678889999999
Q ss_pred eCCCCccCccCCccccCCCCCCEEECcCCcCcccCC
Q 037539 472 DLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIP 507 (622)
Q Consensus 472 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p 507 (622)
+|++|++++..+..|..+++|+.|++++|++.+.++
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999999997766678899999999999999987755
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=2.2e-14 Score=146.01 Aligned_cols=187 Identities=21% Similarity=0.122 Sum_probs=117.3
Q ss_pred CCCCEEEccCCcccccCCCcc----C-CCCCccEEeeeCCcCCCCCCccc-cCCCCccEEEccCCcccccCchhHHh---
Q 037539 316 DRLFILNLANNRLSGKIPDSM----G-FLNNIWTLNLHNNRLTGKLPSPL-RNFSQLRVLDLEKNAIFGEIPTWIGE--- 386 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~----~-~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~i~~~~~~~~~~--- 386 (622)
+.|+.|++++|.++......+ . ..++|++|+|++|.++......+ ..+++|++|+|++|.+.+.....+..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 467777887777764332222 2 23578888888887764322222 23567888888888874443333332
Q ss_pred -hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccc----hHHhhcccccceeecCCccccCCCc--
Q 037539 387 -SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAI----PEEIMDLVGLIALNLSRNHLTGPIT-- 459 (622)
Q Consensus 387 -~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~-- 459 (622)
..++|++|+|++|.++......+...+ ...++|++|+|++|.+.+.. +..+...++|++|+|++|.+++...
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 246788888888888754443333222 26788888999888887533 5566777889999999998875433
Q ss_pred --cccCCCCCCCEEeCCCCccCccCCccccCCC-----CCCEEE--CcCCcCc
Q 037539 460 --PKIGELTSLDFLDLSRNLFSGSIPCSLSQLS-----GLGVLD--LSYNNLS 503 (622)
Q Consensus 460 --~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-----~L~~L~--ls~N~l~ 503 (622)
..+...++|++|+|++|.|++.....+..+. .|+.+. +.+|.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3445678899999999988865544443332 156665 5566554
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.35 E-value=5.5e-11 Score=122.55 Aligned_cols=133 Identities=12% Similarity=0.104 Sum_probs=70.3
Q ss_pred CccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchH
Q 037539 357 PSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPE 436 (622)
Q Consensus 357 ~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 436 (622)
..+|..++.|+.+.+..+. ..+....+.++++|+.+.+. +.++......|. ++.+|+.+++..+ ++.....
T Consensus 258 ~~aF~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~-----~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFA-----GCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp TTTTTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTT-----TCTTCCEEECCTT-CCEECTT
T ss_pred cceeeecccccEEeccccc--ceecCcccccccccccccCC-CcccccCceeec-----CCCCcCEEEeCCc-ccEehHh
Confidence 3456666666666665543 23444444456666666664 233333333333 5666666666543 4434455
Q ss_pred HhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcC
Q 037539 437 EIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNL 502 (622)
Q Consensus 437 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l 502 (622)
+|.+|.+|+.+.+..+ ++.....+|.++++|+.+++.++.... ..+....+|+.+.+..+.+
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 6777777777777544 554555667777777777777665431 3455566677666655443
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=3.6e-12 Score=114.52 Aligned_cols=108 Identities=25% Similarity=0.243 Sum_probs=87.5
Q ss_pred ccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccc
Q 037539 366 LRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445 (622)
Q Consensus 366 L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 445 (622)
.+++++++|.+ ..+|..+ .++|++|++++|.+++..+..+. .+++|++|+|++|++++..+..|..+++|+
T Consensus 11 ~~~l~~s~n~l-~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~-----~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 11 GTTVDCSGKSL-ASVPTGI---PTTTQVLYLYDNQITKLEPGVFD-----RLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp TTEEECTTSCC-SSCCSCC---CTTCSEEECCSSCCCCCCTTTTT-----TCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEEEeCCCCc-CccCccC---CCCCcEEEcCCCcCCccChhhhc-----CcccCCEEECCCCCcCccChhhccCCCCCC
Confidence 46777777777 5677654 36778888888888877676665 688888999999988877777788999999
Q ss_pred eeecCCccccCCCccccCCCCCCCEEeCCCCccCccC
Q 037539 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSI 482 (622)
Q Consensus 446 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 482 (622)
+|+|++|++++..+..|..+++|++|+|++|++....
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9999999999777778999999999999999998543
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.32 E-value=1.2e-10 Score=119.89 Aligned_cols=328 Identities=13% Similarity=0.152 Sum_probs=153.4
Q ss_pred hhcCCC-CCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCC---CCCCCCchhhhcccccCCCccccEEEeecccC
Q 037539 70 VVAKLH-SLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNN---LPSSSVYPWLLNLKAFQHMVSLKSLYLSDSEL 145 (622)
Q Consensus 70 ~l~~l~-~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~---l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l 145 (622)
+|.+++ .|+.+.+..+ ++.... .++.++ ++|+.+.++.+. ++. ..-.+|..+.+|+.+.+..+ +
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~--~AF~~C-~~L~~i~~~~n~p~~l~~-------Ig~~aF~~c~~L~~i~~~~~-~ 125 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGS--NAFYNC-TSLKRVTIQDNKPSCVKK-------IGRQAFMFCSELTDIPILDS-V 125 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECT--TTTTTC-TTCCEEEEGGGCCCCCCE-------ECTTTTTTCTTCCBCGGGTT-C
T ss_pred hccCCCCcCEEEEECCC-eeEEhH--HHhhCC-ccCceEeecCCCCCeeeE-------echhhchhcccceeeccCCc-c
Confidence 566653 4777776543 444433 455566 677777766553 221 22235566666666665543 3
Q ss_pred CCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCc
Q 037539 146 EGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNG 224 (622)
Q Consensus 146 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~ 224 (622)
+.....+|..+.+|+.+.+..+ +....... |..+.. |+.+.+..+ +...... |.. ..|+.+.+..+.. .
T Consensus 126 ~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~-----F~~c~~-L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~ 195 (394)
T 4gt6_A 126 TEIDSEAFHHCEELDTVTIPEG-VTSVADGM-----FSYCYS-LHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-R 195 (394)
T ss_dssp SEECTTTTTTCTTCCEEECCTT-CCEECTTT-----TTTCTT-CCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-E
T ss_pred ceehhhhhhhhcccccccccce-eeeecccc-----eecccc-cccccccce-eeEeccccccc-cceeEEEECCccc-c
Confidence 3344455666666666666533 22222233 333444 666666543 2222222 332 4566666554322 2
Q ss_pred cCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcC
Q 037539 225 TIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLL 304 (622)
Q Consensus 225 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l 304 (622)
....+|..+..++............. ..++........-
T Consensus 196 i~~~af~~c~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~-------------------------- 234 (394)
T 4gt6_A 196 IGTNAFSECFALSTITSDSESYPAID---------------NVLYEKSANGDYA-------------------------- 234 (394)
T ss_dssp ECTTTTTTCTTCCEEEECCSSSCBSS---------------SCEEEECTTSCEE--------------------------
T ss_pred cccchhhhccccceeccccccccccc---------------ceeeccccccccc--------------------------
Confidence 34445555566655555444332110 0000000000000
Q ss_pred ccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhH
Q 037539 305 SGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWI 384 (622)
Q Consensus 305 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~ 384 (622)
...+.....+..+.+.. .++.....+|..+..|+.+.+..+... ....+|.++++|+.+.+.. .+ ..++...
T Consensus 235 ----~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i-~~I~~~a 306 (394)
T 4gt6_A 235 ----LIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RI-TELPESV 306 (394)
T ss_dssp ----EEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TC-CEECTTT
T ss_pred ----ccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cc-cccCcee
Confidence 00011112223333322 122233344555555555555443322 4445555666666666643 22 4455555
Q ss_pred HhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCC
Q 037539 385 GESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGE 464 (622)
Q Consensus 385 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 464 (622)
|.++.+|+.+.+..+ ++......|. ++.+|+.+.+..+ ++.....+|.+|.+|+.+++.++... ...+..
T Consensus 307 F~~c~~L~~i~lp~~-v~~I~~~aF~-----~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~ 376 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG-ITQILDDAFA-----GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAIST 376 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTT-----TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBC
T ss_pred ecCCCCcCEEEeCCc-ccEehHhHhh-----CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhc
Confidence 555666666666543 3323333333 5666777766543 44455667777788888887776543 245666
Q ss_pred CCCCCEEeCCCCcc
Q 037539 465 LTSLDFLDLSRNLF 478 (622)
Q Consensus 465 l~~L~~L~Ls~n~l 478 (622)
..+|+.+.+..+.+
T Consensus 377 ~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 377 DSGLQNLPVAPGSI 390 (394)
T ss_dssp CCCC----------
T ss_pred cCCCCEEEeCCCCE
Confidence 77777777766654
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=6.1e-12 Score=113.37 Aligned_cols=106 Identities=24% Similarity=0.256 Sum_probs=83.2
Q ss_pred cEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccce
Q 037539 367 RVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIA 446 (622)
Q Consensus 367 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 446 (622)
+.+++++|.+ +.+|..+. ++|++|++++|++.+..|..+. .+++|+.|+|++|++++..+..|..+++|++
T Consensus 15 ~~l~~~~n~l-~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP---TDKQRLWLNNNQITKLEPGVFD-----HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC---TTCSEEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cEEEeCCCCC-CccCCCcC---CCCcEEEeCCCCccccCHHHhc-----CCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence 5677777776 66666542 6777777777777766666655 6888888888888888666666788999999
Q ss_pred eecCCccccCCCccccCCCCCCCEEeCCCCccCcc
Q 037539 447 LNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS 481 (622)
Q Consensus 447 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 481 (622)
|+|++|++++..+..|..+++|++|+|++|++...
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred EECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99999999876666789999999999999998843
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=8.4e-11 Score=118.98 Aligned_cols=103 Identities=23% Similarity=0.218 Sum_probs=52.9
Q ss_pred EEEccCC-cccccCchhHHhhcccccEeecCC-CcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccc
Q 037539 368 VLDLEKN-AIFGEIPTWIGESLQNLIVLSLKS-NKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445 (622)
Q Consensus 368 ~L~L~~n-~i~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 445 (622)
.++++++ .+ ..+|. +. .+++|+.|+|++ |.+.+..+..+. .+++|+.|+|++|++++..|..|.++++|+
T Consensus 12 ~v~~~~~n~l-~~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 12 GLRCTRDGAL-DSLHH-LP-GAENLTELYIENQQHLQHLELRDLR-----GLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp CEECCSSCCC-TTTTT-SC-SCSCCSEEECCSCSSCCEECGGGSC-----SCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred EEEcCCCCCC-CccCC-CC-CCCCeeEEEccCCCCCCCcChhHhc-----cccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 3455555 55 44555 33 455556666654 555544444443 455555555555555555555555555555
Q ss_pred eeecCCccccCCCccccCCCCCCCEEeCCCCccC
Q 037539 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 446 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 479 (622)
.|+|++|++++..+..|..++ |+.|+|++|.+.
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred EEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 555555555543333444333 555555555554
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=1.4e-10 Score=117.40 Aligned_cols=108 Identities=19% Similarity=0.074 Sum_probs=94.3
Q ss_pred cEeecCCC-cCcccCChhhhHhHhhhcCCccEEECCC-CcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCC
Q 037539 392 IVLSLKSN-KFHGNIPYQFENEYKSTLGLVRCLDLSS-NKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD 469 (622)
Q Consensus 392 ~~L~L~~n-~l~~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 469 (622)
..++.+++ .++. +|. +. .+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|++++..|..|.++++|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~-----~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LP-----GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SC-----SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred CEEEcCCCCCCCc-cCC-CC-----CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 35688888 7875 554 54 688999999996 999988888999999999999999999998889999999999
Q ss_pred EEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCC
Q 037539 470 FLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIP 507 (622)
Q Consensus 470 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p 507 (622)
.|+|++|++++..+..+..++ |+.|++++|++.|.++
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred EEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 999999999977777777776 9999999999998755
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.05 E-value=1.5e-08 Score=103.65 Aligned_cols=145 Identities=11% Similarity=0.122 Sum_probs=71.9
Q ss_pred CccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhH
Q 037539 334 DSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEY 413 (622)
Q Consensus 334 ~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 413 (622)
..+....+|+.+.+..+ +......+|.++..|+.+.+..+ + ..+....+.++.+|+.+.+..+ +.......+.
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v-~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~--- 283 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-V-TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCS--- 283 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-C-CEECTTTTTTCTTCCEEEECCC-CSEECTTTTT---
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-c-cEeCccccceeehhcccccccc-ceeccccccc---
Confidence 34444555555555433 22233445555556666655544 2 3344444445555555555432 2222222222
Q ss_pred hhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCC
Q 037539 414 KSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQL 489 (622)
Q Consensus 414 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 489 (622)
.+.+|+.+.+.++.++.....+|.++.+|+.+.|..+ ++.....+|.++++|+.+.+..+ ++.+...+|.++
T Consensus 284 --~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 284 --GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp --TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred --cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 4555666666555555444555666666666666543 44334455666666666666443 443444445444
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.03 E-value=2.6e-08 Score=101.92 Aligned_cols=294 Identities=11% Similarity=0.052 Sum_probs=173.8
Q ss_pred cccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-
Q 037539 127 KAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH- 205 (622)
Q Consensus 127 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~- 205 (622)
.+|.++.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +......+ |... +|+.+.+..+- ......
T Consensus 63 ~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~a-----F~~~--~L~~i~lp~~~-~~i~~~~ 131 (379)
T 4h09_A 63 ANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYV-----FQGT--DLDDFEFPGAT-TEIGNYI 131 (379)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTT-----TTTC--CCSEEECCTTC-CEECTTT
T ss_pred HHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccce-----eccC--CcccccCCCcc-ccccccc
Confidence 35667777777777543 554555566665 5666655433 33333333 2222 37777776542 222222
Q ss_pred CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcC
Q 037539 206 LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHF 285 (622)
Q Consensus 206 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l 285 (622)
|.+. +++.+.+..+ ++.+...+|..+..++...+..+.......... .........
T Consensus 132 F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~------- 187 (379)
T 4h09_A 132 FYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV---------------LYNKNKTIL------- 187 (379)
T ss_dssp TTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTE---------------EEETTSSEE-------
T ss_pred cccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccce---------------eccccccee-------
Confidence 4443 4555555433 333445566777777777766554321110000 000000000
Q ss_pred cccCCC-CcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCC
Q 037539 286 RGKLPD-LSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFS 364 (622)
Q Consensus 286 ~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~ 364 (622)
...+. ..+..+.+... ........+..+..|+.+.+..+ +.......|..+..|+.+.+..+ ++.....+|.++.
T Consensus 188 -~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~ 263 (379)
T 4h09_A 188 -ESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT 263 (379)
T ss_dssp -EECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCT
T ss_pred -ccccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceee
Confidence 00000 02222222221 12234456667788888888655 44355567788889999988765 5556667888899
Q ss_pred CccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhccccc
Q 037539 365 QLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGL 444 (622)
Q Consensus 365 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 444 (622)
+|+.+.+..+ + ..++...|.++++|+.+.+.++.++......|. ++.+|+.++|..+ ++.....+|.++.+|
T Consensus 264 ~l~~i~l~~~-i-~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~-----~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 264 ALKTLNFYAK-V-KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFM-----DCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TCCEEEECCC-C-SEECTTTTTTCTTCCEEEECCTTCCEECTTTTT-----TCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred hhcccccccc-c-eeccccccccccccccccccccccceehhhhhc-----CCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 9999998765 3 567777777889999999988887766666665 7899999999754 665667789999999
Q ss_pred ceeecCCccccCCCccccCCCCCC
Q 037539 445 IALNLSRNHLTGPITPKIGELTSL 468 (622)
Q Consensus 445 ~~L~L~~n~l~~~~~~~l~~l~~L 468 (622)
+++.+..+ ++.....+|.++..+
T Consensus 336 ~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 336 STISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CCCCCCTT-CCEECTTTTTTSSCC
T ss_pred CEEEECCc-cCEEchhHhhCCCCC
Confidence 99999765 554556677766433
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=3.8e-10 Score=113.67 Aligned_cols=185 Identities=15% Similarity=0.151 Sum_probs=110.4
Q ss_pred ccCCCCCCEEEccCCccc---------ccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCch
Q 037539 312 WLHFDRLFILNLANNRLS---------GKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPT 382 (622)
Q Consensus 312 ~~~~~~L~~L~L~~n~i~---------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 382 (622)
...+++|+.|.+...... +.+...+..+|+|+.|.+++|.-. .++. +. +++|++|++..|.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH
Confidence 445678888877654321 112233456788888888887322 2222 33 78889999888877443333
Q ss_pred hHHh-hcccccEeecCC--CcCcccC-ChhhhHhHh-hhcCCccEEECCCCcCCccchHHhh---cccccceeecCCccc
Q 037539 383 WIGE-SLQNLIVLSLKS--NKFHGNI-PYQFENEYK-STLGLVRCLDLSSNKLDGAIPEEIM---DLVGLIALNLSRNHL 454 (622)
Q Consensus 383 ~~~~-~l~~L~~L~L~~--n~l~~~~-~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l 454 (622)
.+.. .+|+|+.|+|+. +...+.. ...+..... ..+++|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 3331 478888888753 2221111 111111111 1478888888888888754444443 477888888888888
Q ss_pred cCCC----ccccCCCCCCCEEeCCCCccCccCCccccC-CCCCCEEECcCCc
Q 037539 455 TGPI----TPKIGELTSLDFLDLSRNLFSGSIPCSLSQ-LSGLGVLDLSYNN 501 (622)
Q Consensus 455 ~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~ls~N~ 501 (622)
++.. +..+..+++|+.|+|++|.++......+.. + ...+++++++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 7543 233345688888888888877544333433 2 3557777765
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=4.2e-09 Score=105.99 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=50.8
Q ss_pred CCCCCEEEccCCcccccCCCccC--CCCCccEEeeeCC--cCCCC-----CCccc--cCCCCccEEEccCCcccccCchh
Q 037539 315 FDRLFILNLANNRLSGKIPDSMG--FLNNIWTLNLHNN--RLTGK-----LPSPL--RNFSQLRVLDLEKNAIFGEIPTW 383 (622)
Q Consensus 315 ~~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n--~i~~~-----~~~~l--~~l~~L~~L~L~~n~i~~~~~~~ 383 (622)
+++|++|++..|.++......+. .+++|++|+|+.+ ...+. +...+ ..+++|++|++.+|.+.+..+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 45566666665555433222222 4556666665421 11100 00111 13556666666666553333322
Q ss_pred HHh--hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCc
Q 037539 384 IGE--SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDG 432 (622)
Q Consensus 384 ~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 432 (622)
+++ .+++|++|+|+.|.+.+..+..+.... ..+++|+.|++++|.++.
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L-~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHV-DKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH-HHHTTCSEEECCSBBCCH
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhc-ccCCcceEEECCCCcCCH
Confidence 321 245555555555555543322221111 134555555555555443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.68 E-value=1.2e-08 Score=92.69 Aligned_cols=96 Identities=17% Similarity=0.201 Sum_probs=43.9
Q ss_pred cccCCCCccEEEccCC-cccccCchhHHh---hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCcc-
Q 037539 359 PLRNFSQLRVLDLEKN-AIFGEIPTWIGE---SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA- 433 (622)
Q Consensus 359 ~l~~l~~L~~L~L~~n-~i~~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~- 433 (622)
.+...++|++|+|++| .+.......+.. ..++|++|+|++|.+.......+...+. ..+.|++|+|++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcCCHHH
Confidence 4445666666666666 653322222211 2345666666666555433333322221 344555555555555432
Q ss_pred ---chHHhhcccccceeec--CCcccc
Q 037539 434 ---IPEEIMDLVGLIALNL--SRNHLT 455 (622)
Q Consensus 434 ---~~~~~~~l~~L~~L~L--~~n~l~ 455 (622)
+...+...++|++|+| ++|.++
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 1223333444444444 444444
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.67 E-value=1.3e-08 Score=92.41 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=38.0
Q ss_pred CCCCCccEEeeeCC-cCCCC----CCccccCCCCccEEEccCCcccccCchhHHh---hcccccEeecCCCcCcccCChh
Q 037539 337 GFLNNIWTLNLHNN-RLTGK----LPSPLRNFSQLRVLDLEKNAIFGEIPTWIGE---SLQNLIVLSLKSNKFHGNIPYQ 408 (622)
Q Consensus 337 ~~l~~L~~L~Ls~n-~i~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~ 408 (622)
...+.|++|+|++| .+... +...+...++|++|+|++|.+.+.....+.+ ..++|++|+|++|.+.+.....
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34445555555554 44321 1223334445555555555542221111111 2234555555555544333222
Q ss_pred hhHhHhhhcCCccEEEC--CCCcCC
Q 037539 409 FENEYKSTLGLVRCLDL--SSNKLD 431 (622)
Q Consensus 409 ~~~~~~~~l~~L~~L~L--~~n~l~ 431 (622)
+.... ...+.|++|+| ++|.+.
T Consensus 113 l~~~L-~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 113 LVEAL-QSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHGG-GGCSSCCEEECCCCSSCCC
T ss_pred HHHHH-HhCCCceEEEecCCCCCCC
Confidence 22111 13344555555 445544
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.37 E-value=1.3e-07 Score=90.23 Aligned_cols=79 Identities=24% Similarity=0.259 Sum_probs=50.1
Q ss_pred hcCCccEEECCCCcCCc--cchHHhhcccccceeecCCccccCCCccccCCCC--CCCEEeCCCCccCccCCc-------
Q 037539 416 TLGLVRCLDLSSNKLDG--AIPEEIMDLVGLIALNLSRNHLTGPITPKIGELT--SLDFLDLSRNLFSGSIPC------- 484 (622)
Q Consensus 416 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~------- 484 (622)
.++.|+.|+|++|.+++ .++..+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|++.+..|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 56677777777777765 3345566777777777777777653 2233333 777777777777654442
Q ss_pred cccCCCCCCEEE
Q 037539 485 SLSQLSGLGVLD 496 (622)
Q Consensus 485 ~l~~l~~L~~L~ 496 (622)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 255667777665
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=2.5e-07 Score=81.66 Aligned_cols=14 Identities=7% Similarity=0.204 Sum_probs=5.5
Q ss_pred CCCccccEEEeecc
Q 037539 130 QHMVSLKSLYLSDS 143 (622)
Q Consensus 130 ~~l~~L~~L~L~~n 143 (622)
..+++|++|+|++|
T Consensus 82 ~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 82 EGLQYVEKIRLCKC 95 (176)
T ss_dssp TTCSCCCEEEEESC
T ss_pred cCCCCCCEEEeCCC
Confidence 33334444444433
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=7.2e-07 Score=78.69 Aligned_cols=84 Identities=12% Similarity=0.058 Sum_probs=47.0
Q ss_pred CCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCC-CCCCCCchhhhcccccCCC----ccccEEEeeccc-CCCC
Q 037539 75 HSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNN-LPSSSVYPWLLNLKAFQHM----VSLKSLYLSDSE-LEGG 148 (622)
Q Consensus 75 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~l~~l----~~L~~L~L~~n~-l~~~ 148 (622)
.+|++||+++|.+++... ..+..+ ++|++|+|++|. +++ ..+..++.+ ++|++|++++|. +++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL--~~L~~~-~~L~~L~L~~C~~ItD-------~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF--DHMEGL-QYVEKIRLCKCHYIED-------GCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCEEEEEEESCCCCGGGG--GGGTTC-SCCCEEEEESCTTCCH-------HHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCCccHHHH--HHhcCC-CCCCEEEeCCCCccCH-------HHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 356666666666655433 445555 666666666663 444 223333432 356666666653 5554
Q ss_pred CchhhcCCccCcEeEeecCC
Q 037539 149 IPKFFGNMCSLKKLRLSYNK 168 (622)
Q Consensus 149 ~~~~l~~l~~L~~L~L~~n~ 168 (622)
.-..+..+++|+.|+++++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 44455566666666666653
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=5.9e-07 Score=85.55 Aligned_cols=84 Identities=24% Similarity=0.300 Sum_probs=63.6
Q ss_pred EECCCCcCC---ccchHHhhcccccceeecCCccccC--CCccccCCCCCCCEEeCCCCccCccCCccccCCC--CCCEE
Q 037539 423 LDLSSNKLD---GAIPEEIMDLVGLIALNLSRNHLTG--PITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLS--GLGVL 495 (622)
Q Consensus 423 L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L 495 (622)
++++.|... ..+.....++++|++|+|++|++++ .++..+..+++|+.|+|++|++++. ..+..+. .|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 556666432 1222233578999999999999997 3446677899999999999999965 2344444 89999
Q ss_pred ECcCCcCcccCCC
Q 037539 496 DLSYNNLSGKIPS 508 (622)
Q Consensus 496 ~ls~N~l~~~~p~ 508 (622)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999987774
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.87 E-value=1.1e-05 Score=72.55 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=5.5
Q ss_pred cccEeecCCCcCc
Q 037539 390 NLIVLSLKSNKFH 402 (622)
Q Consensus 390 ~L~~L~L~~n~l~ 402 (622)
.|+.|+|++|.+.
T Consensus 71 ~L~~L~L~~n~ig 83 (197)
T 1pgv_A 71 HIEKFSLANTAIS 83 (197)
T ss_dssp CCCEEECTTSCCB
T ss_pred CcCEEEccCCCCC
Confidence 3444444444443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.77 E-value=2.2e-05 Score=70.56 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=82.8
Q ss_pred cccccEeecCCC-cCcccCChhhhHhHhhhcCCccEEECCCCcCCcc----chHHhhcccccceeecCCccccCCCc---
Q 037539 388 LQNLIVLSLKSN-KFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA----IPEEIMDLVGLIALNLSRNHLTGPIT--- 459 (622)
Q Consensus 388 l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~--- 459 (622)
-+.|+.|+|++| .+.......+...+. .-..|+.|+|++|++.+. +.+.+..-+.|++|+|++|.|++...
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 457888888875 666555444444333 568899999999999753 45566678999999999999985433
Q ss_pred -cccCCCCCCCEEeCCCCc---cCcc----CCccccCCCCCCEEECcCCcC
Q 037539 460 -PKIGELTSLDFLDLSRNL---FSGS----IPCSLSQLSGLGVLDLSYNNL 502 (622)
Q Consensus 460 -~~l~~l~~L~~L~Ls~n~---l~~~----~~~~l~~l~~L~~L~ls~N~l 502 (622)
+.+..-+.|++|+|++|. +... +.+.+..-+.|++|+++.|..
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 456667889999998763 3322 344566778999999988764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.55 E-value=0.00011 Score=61.63 Aligned_cols=97 Identities=15% Similarity=0.049 Sum_probs=63.7
Q ss_pred ceeecCCcccc-CCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCC
Q 037539 445 IALNLSRNHLT-GPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGN 523 (622)
Q Consensus 445 ~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n 523 (622)
..++.+++.++ ..+|..+ -++|++|+|++|+|+...+..|..+++|+.|+|++|++.+.+.. ..|........
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l----~~l~~wl~~~~ 84 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL----VPLRAWLAGRP 84 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG----HHHHHHHHTSS
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc----HHHHHHHHhCc
Confidence 36778888876 2455433 24799999999999988888899999999999999999987442 22222111110
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCC
Q 037539 524 LELCGLPLANMCLDEESTPGPGTDDD 549 (622)
Q Consensus 524 ~~lc~~~~~~~C~~~~~~~~~~~~~~ 549 (622)
... ......|..|...+|....+.
T Consensus 85 ~~~--~~~~~~C~~P~~l~g~~l~~l 108 (130)
T 3rfe_A 85 ERA--PYRDLRCVAPPALRGRLLPYL 108 (130)
T ss_dssp CSG--GGTTCBCCBSTTTTTCBGGGC
T ss_pred ccc--cccCcEeCcChHHcCCCcccC
Confidence 000 022457888887777655443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.12 E-value=0.0055 Score=51.18 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=40.5
Q ss_pred EEECCCCcCC-ccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccC
Q 037539 422 CLDLSSNKLD-GAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 422 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 479 (622)
.++.++++++ ..+|..+ -++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6677777775 2444322 136888888888888766777888888888888888775
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.80 E-value=21 Score=27.49 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=16.8
Q ss_pred CccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 334 DSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 334 ~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
.+|.++.+|+.+.+-.+ ++.....+|.+|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444444444444432 222333444455555555444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.75 E-value=45 Score=25.58 Aligned_cols=48 Identities=8% Similarity=-0.054 Sum_probs=38.5
Q ss_pred CcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCC
Q 037539 302 NLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNN 350 (622)
Q Consensus 302 n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n 350 (622)
..++.....+|.+|..|+.+.+-.+ ++.+...+|.++.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455566788999999999999876 44466678999999999999765
No 167
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=32.29 E-value=15 Score=23.40 Aligned_cols=11 Identities=18% Similarity=0.105 Sum_probs=4.1
Q ss_pred Hhhheeeeecc
Q 037539 579 GVSGTLMLNRS 589 (622)
Q Consensus 579 ~~~~~~~~~~~ 589 (622)
++++.++|+++
T Consensus 27 i~~~~~~~~RR 37 (44)
T 2ks1_B 27 VALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhh
Confidence 33333343333
No 168
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=31.02 E-value=9.3 Score=24.30 Aligned_cols=24 Identities=8% Similarity=-0.031 Sum_probs=9.9
Q ss_pred eehhhHHHHHHHHHhhheeeeecc
Q 037539 566 YVSSILSFFVGFWGVSGTLMLNRS 589 (622)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~ 589 (622)
+.+.++|+++.+++.+++++|.++
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhheeh
Confidence 444555544333333333333333
No 169
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=30.79 E-value=12 Score=22.96 Aligned_cols=19 Identities=21% Similarity=0.231 Sum_probs=10.4
Q ss_pred eeehhhHHHHHHHHHhhhe
Q 037539 565 FYVSSILSFFVGFWGVSGT 583 (622)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~ 583 (622)
.+.+++++.++++.++++.
T Consensus 12 aIAGiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 12 EIVAVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeehHHHHHHHHHHHH
Confidence 4566666666655444433
No 170
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=29.07 E-value=9.9 Score=22.28 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHhhheeeeeccccc
Q 037539 568 SSILSFFVGFWGVSGTLMLNRSWSY 592 (622)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (622)
.+++|+++++.++...++||+..|.
T Consensus 11 t~i~gl~vif~~lg~tflywrgrrh 35 (40)
T 2l9u_A 11 TVIAGLVVIFMMLGGTFLYWRGRRH 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCceeEEEccccc
Confidence 3455555555555666777666543
No 171
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=28.29 E-value=18 Score=22.98 Aligned_cols=6 Identities=17% Similarity=0.152 Sum_probs=2.2
Q ss_pred eeeecc
Q 037539 584 LMLNRS 589 (622)
Q Consensus 584 ~~~~~~ 589 (622)
++|+++
T Consensus 31 ~~~~RR 36 (44)
T 2l2t_A 31 AVYVRR 36 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 333333
Done!