BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037540
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
pdb|1SU3|B Chain B, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
Length = 450
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 106/220 (48%), Gaps = 43/220 (19%)
Query: 100 QTKLGLPVTGKLDSETISTIMSPRCGVSDTSFRQKIHATKRYSYFYGKPRWVRESPMTLT 159
Q GL VTGK D+ET+ + PRCGV D + ++ G PRW + LT
Sbjct: 49 QEFFGLKVTGKPDAETLKVMKQPRCGVPDVA---------QFVLTEGNPRWEQ---THLT 96
Query: 160 YAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQ 219
Y + + DV A + +FQ WS+V P+ FT++ + ADI I F GDH D
Sbjct: 97 YRIE--NYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDNS 153
Query: 220 PF---------------------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGL 258
PF HFD E W + +L VA HE+GH LGL
Sbjct: 154 PFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREY------NLHRVAAHELGHSLGL 207
Query: 259 AHTSVKEAVMYPSLTPRTRKVDLKVDDVEGVQALYGSNPN 298
+H++ A+MYPS T + V L DD++G+QA+YG + N
Sbjct: 208 SHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQN 246
>pdb|1SLM|A Chain A, Crystal Structure Of Fibroblast Stromelysin-1: The
C-Truncated Human Proenzyme
Length = 255
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 124/274 (45%), Gaps = 53/274 (19%)
Query: 53 LDAEMGSNITGMSELKKYFTRFGYLSLSYTNFTDVFDT-QLQSAVVSYQTKLGLPVTGKL 111
LD T M+ ++KY + L F D+ + + Q LGL VTGKL
Sbjct: 3 LDGAARGEDTSMNLVQKYLENYYDLKKDVKQFVRRKDSGPVVKKIREMQKFLGLEVTGKL 62
Query: 112 DSETISTIMSPRCGVSDTSFRQKIHATKRYSYFYGKPRWVRESPMTLTYAFSKTDMIDYI 171
DS+T+ + PRCGV D + F G P+W + LTY +++Y
Sbjct: 63 DSDTLEVMRKPRCGVPDVG---------HFRTFPGIPKWRKTH---LTYR-----IVNYT 105
Query: 172 -DLTD--VKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF------- 221
DL V +A + + + W V P+ F+ +Y+ ADI I F +HGD PF
Sbjct: 106 PDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGNVL 164
Query: 222 --------------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAV 267
HFD E W K +L VA HEIGH LGL H++ EA+
Sbjct: 165 AHAYAPGPGINGDAHFDDDEQW------TKDTTGTNLFLVAAHEIGHSLGLFHSANTEAL 218
Query: 268 MYP---SLTPRTRKVDLKVDDVEGVQALYGSNPN 298
MYP SLT TR L DD+ G+Q+LYG P+
Sbjct: 219 MYPLYHSLTDLTR-FRLSQDDINGIQSLYGPPPD 251
>pdb|1MNC|A Chain A, Structure Of Human Neutrophil Collagenase Reveals Large
S1' Specificity Pocket
Length = 163
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 82/171 (47%), Gaps = 34/171 (19%)
Query: 146 GKPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSAD 205
G P+W R LTY + + +V+ A K +F+ WS P+ FT I AD
Sbjct: 4 GGPKWER---TNLTYRIR--NYTPQLSEAEVERAIKDAFELWSVASPLIFTGI-SQGEAD 57
Query: 206 IHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDL 244
I+I FY DHGDG PF HFDA ETW + +L
Sbjct: 58 INIAFYQRDHGDGSPFDGPNGILAHAFQPGQGIGGDAHFDAEETW------TNTSANYNL 111
Query: 245 ESVATHEIGHVLGLAHTSVKEAVMYPSLTPR-TRKVDLKVDDVEGVQALYG 294
VA HE GH LGLAH+S A+MYP+ R T L DD++G+QA+YG
Sbjct: 112 FLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 162
>pdb|1JAQ|A Chain A, Complex Of 1-Hydroxylamine-2-Isobutylmalonyl-Ala-Gly-Nh2
With The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1JAP|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1JAO|A Chain A, Complex Of 3-Mercapto-2-Benzylpropanoyl-Ala-Gly-Nh2 With
The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1I73|A Chain A, Complex Of Pro-Leu-L-Trp Phosphonate With The Catalitic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1I76|A Chain A, Complex Of 2-(Biphenyl-4-Sulfonyl)-1,2,3,4-Tetrahydro-
Isoquinoline-3-Carboxylic Acid (D-Tic Derivative) With T
Catalitic Domain Of Matrix Metallo Proteinase-8 (Met80
Form)
pdb|1JJ9|A Chain A, Crystal Structure Of Mmp8-Barbiturate Complex Reveals
Mechanism For Collagen Substrate Recognition
pdb|1ZP5|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A N-
Hydroxyurea Inhibitor
pdb|1ZS0|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (s-enantiomer)
pdb|1ZVX|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (r-enantiomer)
pdb|1MMB|A Chain A, Complex Of Bb94 With The Catalytic Domain Of Matrix
Metalloproteinase-8
pdb|3DNG|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DNG|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPE|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
Length = 163
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 81/171 (47%), Gaps = 34/171 (19%)
Query: 146 GKPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSAD 205
G P+W R LTY + + +V+ A K +F+ WS P+ FT I AD
Sbjct: 5 GNPKWER---TNLTYRIR--NYTPQLSEAEVERAIKDAFELWSVASPLIFTRI-SQGEAD 58
Query: 206 IHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDL 244
I+I FY DHGD PF HFDA ETW + +L
Sbjct: 59 INIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETW------TNTSANYNL 112
Query: 245 ESVATHEIGHVLGLAHTSVKEAVMYPSLTPR-TRKVDLKVDDVEGVQALYG 294
VA HE GH LGLAH+S A+MYP+ R T L DD++G+QA+YG
Sbjct: 113 FLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 163
>pdb|1BZS|A Chain A, Crystal Structure Of Mmp8 Complexed With Hmr2909
Length = 165
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 81/171 (47%), Gaps = 34/171 (19%)
Query: 146 GKPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSAD 205
G P+W R LTY + + +V+ A K +F+ WS P+ FT I AD
Sbjct: 6 GNPKWER---TNLTYRIR--NYTPQLSEAEVERAIKDAFELWSVASPLIFTRI-SQGEAD 59
Query: 206 IHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDL 244
I+I FY DHGD PF HFDA ETW + +L
Sbjct: 60 INIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETW------TNTSANYNL 113
Query: 245 ESVATHEIGHVLGLAHTSVKEAVMYPSLTPR-TRKVDLKVDDVEGVQALYG 294
VA HE GH LGLAH+S A+MYP+ R T L DD++G+QA+YG
Sbjct: 114 FLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 164
>pdb|1KBC|A Chain A, Procarboxypeptidase Ternary Complex
pdb|1KBC|B Chain B, Procarboxypeptidase Ternary Complex
pdb|1JAN|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Phe79 Form)
Length = 164
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 81/171 (47%), Gaps = 34/171 (19%)
Query: 146 GKPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSAD 205
G P+W R LTY + + +V+ A K +F+ WS P+ FT I AD
Sbjct: 6 GNPKWER---TNLTYRIR--NYTPQLSEAEVERAIKDAFELWSVASPLIFTRI-SQGEAD 59
Query: 206 IHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDL 244
I+I FY DHGD PF HFDA ETW + +L
Sbjct: 60 INIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETW------TNTSANYNL 113
Query: 245 ESVATHEIGHVLGLAHTSVKEAVMYPSLTPR-TRKVDLKVDDVEGVQALYG 294
VA HE GH LGLAH+S A+MYP+ R T L DD++G+QA+YG
Sbjct: 114 FLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 164
>pdb|3TT4|A Chain A, Human Mmp8 In Complex With L-Glutamate Motif Inhibitor
Length = 159
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 81/171 (47%), Gaps = 34/171 (19%)
Query: 146 GKPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSAD 205
G P+W R LTY + + +V+ A K +F+ WS P+ FT I AD
Sbjct: 1 GNPKWER---TNLTYRIR--NYTPQLSEAEVERAIKDAFELWSVASPLIFTRI-SQGEAD 54
Query: 206 IHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDL 244
I+I FY DHGD PF HFDA ETW + +L
Sbjct: 55 INIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETW------TNTSANYNL 108
Query: 245 ESVATHEIGHVLGLAHTSVKEAVMYPSLTPR-TRKVDLKVDDVEGVQALYG 294
VA HE GH LGLAH+S A+MYP+ R T L DD++G+QA+YG
Sbjct: 109 FLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 159
>pdb|2JSD|A Chain A, Solution Structure Of Mmp20 Complexed With Nngh
Length = 160
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 84/171 (49%), Gaps = 34/171 (19%)
Query: 146 GKPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSAD 205
G+P+W + TLTY SK + +V A + + Q WSS +P++F I + AD
Sbjct: 1 GEPKWKKN---TLTYRISK--YTPSMSSVEVDKAVEMALQAWSSAVPLSFVRI-NSGEAD 54
Query: 206 IHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDL 244
I I F +GDHGD PF HFD AE W + +L
Sbjct: 55 IMISFENGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTMGTN------GFNL 108
Query: 245 ESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTR-KVDLKVDDVEGVQALYG 294
+VA HE GH LGLAH++ A+MYP+ + L DDV+G+QALYG
Sbjct: 109 FTVAAHEFGHALGLAHSTDPSALMYPTYKYKNPYGFHLPKDDVKGIQALYG 159
>pdb|1A86|A Chain A, Mmp8 With Malonic And Aspartic Acid Based Inhibitor
pdb|1JH1|A Chain A, Crystal Structure Of Mmp-8 Complexed With A 6h-1,3,4-
Thiadiazine Derived Inhibitor
pdb|2OY2|A Chain A, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY2|F Chain F, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY4|A Chain A, Uninhibited Human Mmp-8
pdb|2OY4|F Chain F, Uninhibited Human Mmp-8
pdb|1A85|A Chain A, Mmp8 With Malonic And Asparagine Based Inhibitor
Length = 158
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 34/170 (20%)
Query: 147 KPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADI 206
P+W R LTY + + +V+ A K +F+ WS P+ FT I ADI
Sbjct: 1 NPKWER---TNLTYRIR--NYTPQLSEAEVERAIKDAFELWSVASPLIFTRI-SQGEADI 54
Query: 207 HIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDLE 245
+I FY DHGD PF HFDA ETW + +L
Sbjct: 55 NIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETW------TNTSANYNLF 108
Query: 246 SVATHEIGHVLGLAHTSVKEAVMYPSLTPR-TRKVDLKVDDVEGVQALYG 294
VA HE GH LGLAH+S A+MYP+ R T L DD++G+QA+YG
Sbjct: 109 LVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 158
>pdb|3AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, Minimized Average
Structure
pdb|4AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, 30 Structures
pdb|1AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, 30 Structures
pdb|1HFC|A Chain A, 1.56 Angstrom Structure Of Mature Truncated Human
Fibroblast Collagenase
pdb|2AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, Minimized Average Structure
pdb|2TCL|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 84/174 (48%), Gaps = 34/174 (19%)
Query: 146 GKPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSAD 205
G PRW + LTY + + DV A + +FQ WS+V P+ FT++ + AD
Sbjct: 5 GNPRWEQ---THLTYRIE--NYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQAD 58
Query: 206 IHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDL 244
I I F GDH D PF HFD E W + +L
Sbjct: 59 IMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREY------NL 112
Query: 245 ESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVDLKVDDVEGVQALYGSNPN 298
VA HE+GH LGL+H++ A+MYPS T + V L DD++G+QA+YG + N
Sbjct: 113 HRVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQN 165
>pdb|2J0T|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
Length = 170
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 84/174 (48%), Gaps = 34/174 (19%)
Query: 146 GKPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSAD 205
G PRW + LTY + + DV A + +FQ WS+V P+ FT++ + AD
Sbjct: 6 GNPRWEQ---THLTYRIE--NYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQAD 59
Query: 206 IHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDL 244
I I F GDH D PF HFD E W + +L
Sbjct: 60 IMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREY------NL 113
Query: 245 ESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVDLKVDDVEGVQALYGSNPN 298
VA HE+GH LGL+H++ A+MYPS T + V L DD++G+QA+YG + N
Sbjct: 114 HRVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQN 166
>pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|2CLT|B Chain B, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|4AUO|A Chain A, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
pdb|4AUO|B Chain B, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
Length = 367
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 34/174 (19%)
Query: 146 GKPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSAD 205
G PRW + LTY + + DV A + +FQ WS+V P+ FT++ + AD
Sbjct: 6 GNPRWEQTH---LTYRIE--NYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQAD 59
Query: 206 IHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDL 244
I I F GDH D PF HFD E W + +L
Sbjct: 60 IMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREY------NL 113
Query: 245 ESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVDLKVDDVEGVQALYGSNPN 298
VA H +GH LGL+H++ A+MYPS T + V L DD++G+QA+YG + N
Sbjct: 114 HRVAAHALGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQN 166
>pdb|1CGE|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 168
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 34/174 (19%)
Query: 146 GKPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSAD 205
G PRW + L Y + + DV A + +FQ WS+V P+ FT++ + AD
Sbjct: 4 GNPRWEQ---THLRYRIE--NYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQAD 57
Query: 206 IHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDL 244
I I F GDH D PF HFD E W + +L
Sbjct: 58 IMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREY------NL 111
Query: 245 ESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVDLKVDDVEGVQALYGSNPN 298
VA HE+GH LGL+H++ A+MYPS T + V L DD++G+QA+YG + N
Sbjct: 112 HRVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQN 164
>pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase
(Mmp1) Reveals A C-Terminal Domain Containing A
Calcium-Linked, Four-Bladed Beta- Propeller
Length = 370
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 83/174 (47%), Gaps = 34/174 (19%)
Query: 146 GKPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSAD 205
G PRW LTY + + DV A + +FQ WS+V P+ FT++ + AD
Sbjct: 6 GNPRWEN---THLTYRIE--NYTPDLSREDVDRAIEKAFQLWSNVSPLTFTKVSE-GQAD 59
Query: 206 IHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDL 244
I I F GDH D PF HFD E W K+ +L
Sbjct: 60 IMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERW------TKNFRDYNL 113
Query: 245 ESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVDLKVDDVEGVQALYGSNPN 298
VA HE+GH LGL+H++ A+MYP+ T V L DD++G+QA+YG + N
Sbjct: 114 YRVAAHELGHSLGLSHSTDIGALMYPNYI-YTGDVQLSQDDIDGIQAIYGPSEN 166
>pdb|1CGL|A Chain A, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
pdb|1CGL|B Chain B, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 82/174 (47%), Gaps = 34/174 (19%)
Query: 146 GKPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSAD 205
G PRW + L Y + + DV A + +FQ WS V P+ FT++ + AD
Sbjct: 5 GNPRWEQ---THLRYRIE--NYTPDLPRADVDHAIEKAFQLWSDVTPLTFTKVSE-GQAD 58
Query: 206 IHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDL 244
I I F GDH D PF HFD E W + +L
Sbjct: 59 IMISFVRGDHRDNSPFDGPGGNLAHAFDPGPGIGGDAHFDEDERWTNNFREY------NL 112
Query: 245 ESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVDLKVDDVEGVQALYGSNPN 298
VA HE+GH LGL+H++ A+MYPS T + V L DD++G+QA+YG + N
Sbjct: 113 HRVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQN 165
>pdb|3AYU|A Chain A, Crystal Structure Of Mmp-2 Active Site Mutant In Complex
With App- Drived Decapeptide Inhibitor
Length = 167
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 86/182 (47%), Gaps = 39/182 (21%)
Query: 141 YSYFYGKPRWVRESPMTLTYAFSKTDMIDY---IDLTDVKAAFKSSFQRWSSVIPVNFTE 197
Y++F KP+W + +TY +I Y +D V AF +FQ WS V P+ F+
Sbjct: 1 YNFFPRKPKWDKNQ---ITYR-----IIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSR 52
Query: 198 IYDYDSADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESV 236
I+D ADI I F +HGDG PF HFD E W ++
Sbjct: 53 IHD-GEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELW-----TL 106
Query: 237 KSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVDLKVDDVEGVQALYGSN 296
V L VA H GH +GL H+ A+M P T T+ L DD++G+Q LYG++
Sbjct: 107 GKGVGYSLFLVAAHAFGHAMGLEHSQDPGALMAPIYT-YTKNFRLSQDDIKGIQELYGAS 165
Query: 297 PN 298
P+
Sbjct: 166 PD 167
>pdb|1CGF|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
pdb|1CGF|B Chain B, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 162
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 81/170 (47%), Gaps = 34/170 (20%)
Query: 146 GKPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSAD 205
G PRW + L Y + + DV A + +FQ WS+V P+ FT++ + AD
Sbjct: 4 GNPRWEQ---THLRYRIE--NYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQAD 57
Query: 206 IHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDL 244
I I F GDH D PF HFD E W + +L
Sbjct: 58 IMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREY------NL 111
Query: 245 ESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVDLKVDDVEGVQALYG 294
VA HE+GH LGL+H++ A+MYPS T + V L DD++G+QA+YG
Sbjct: 112 HRVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYG 160
>pdb|3SHI|A Chain A, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|G Chain G, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|M Chain M, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
Length = 156
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 81/169 (47%), Gaps = 34/169 (20%)
Query: 147 KPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADI 206
PRW + LTY + + DV A + +FQ WS+V P+ FT++ + ADI
Sbjct: 1 NPRWEQ---THLTYRIE--NYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADI 54
Query: 207 HIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDLE 245
I F GDH D PF HFD E W + +L
Sbjct: 55 MISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREY------NLH 108
Query: 246 SVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVDLKVDDVEGVQALYG 294
VA HE+GH LGL+H++ A+MYPS T + V L DD++G+QA+YG
Sbjct: 109 RVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYG 156
>pdb|1QIB|A Chain A, Crystal Structure Of Gelatinase A Catalytic Domain
Length = 161
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 82/175 (46%), Gaps = 39/175 (22%)
Query: 147 KPRWVRESPMTLTYAFSKTDMIDY---IDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDS 203
KP+W + +TY +I Y +D V AF +FQ WS V P+ F+ I+D
Sbjct: 2 KPKWDKNQ---ITYR-----IIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHD-GE 52
Query: 204 ADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAV 242
ADI I F +HGDG PF HFD E W S+ V
Sbjct: 53 ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELW-----SLGKGVGY 107
Query: 243 DLESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVDLKVDDVEGVQALYGSNP 297
L VA HE GH +GL H+ A+M P T T+ L DD++G+Q LYG++P
Sbjct: 108 SLFLVAAHEFGHAMGLEHSQDPGALMAPIYT-YTKNFRLSQDDIKGIQELYGASP 161
>pdb|966C|A Chain A, Crystal Structure Of Fibroblast Collagenase-1 Complexed To
A Diphenyl-Ether Sulphone Based Hydroxamic Acid
Length = 157
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 72/141 (51%), Gaps = 29/141 (20%)
Query: 175 DVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF------------- 221
DV A + +FQ WS+V P+ FT++ + ADI I F GDH D PF
Sbjct: 22 DVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDNSPFDGPGGNLAHAFQP 80
Query: 222 --------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSLT 273
HFD E W + +L VA HE+GH LGL+H++ A+MYPS T
Sbjct: 81 GPGIGGDAHFDEDERWTNNFREY------NLHRVAAHELGHSLGLSHSTDIGALMYPSYT 134
Query: 274 PRTRKVDLKVDDVEGVQALYG 294
+ V L DD++G+QA+YG
Sbjct: 135 -FSGDVQLAQDDIDGIQAIYG 154
>pdb|1CXV|A Chain A, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
pdb|1CXV|B Chain B, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
Length = 164
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 85/172 (49%), Gaps = 37/172 (21%)
Query: 148 PRWVRESPMTLTYAFSKTDMIDY---IDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSA 204
PR ++ S LTY +++Y + ++V+ AF+ +F+ WS V P+NFT IYD +A
Sbjct: 5 PRTLKWSQTNLTYR-----IVNYTPDMSHSEVEKAFRKAFKVWSDVTPLNFTRIYD-GTA 58
Query: 205 DIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVD 243
DI I F +HGD PF HFD ETW S +
Sbjct: 59 DIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETW------TSSSKGYN 112
Query: 244 LESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTR-KVDLKVDDVEGVQALYG 294
L VA HE+GH LGL H+ A+M+P T + L DDV+G+Q LYG
Sbjct: 113 LFIVAAHELGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQFLYG 164
>pdb|3KRY|A Chain A, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|B Chain B, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|C Chain C, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|D Chain D, Crystal Structure Of Mmp-13 In Complex With Sc-78080
Length = 164
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 86/172 (50%), Gaps = 37/172 (21%)
Query: 148 PRWVRESPMTLTYAFSKTDMIDYI-DLT--DVKAAFKSSFQRWSSVIPVNFTEIYDYDSA 204
PR ++ S M LTY +++Y D+T +V+ AFK +F+ WS V P+NFT ++D A
Sbjct: 5 PRTLKWSKMNLTYR-----IVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIA 58
Query: 205 DIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVD 243
DI I F +HGD PF HFD ETW S +
Sbjct: 59 DIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETW------TSSSKGYN 112
Query: 244 LESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTR-KVDLKVDDVEGVQALYG 294
L VA HE GH LGL H+ A+M+P T + L DDV+G+Q+LYG
Sbjct: 113 LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|2OW9|A Chain A, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OW9|B Chain B, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OZR|A Chain A, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|B Chain B, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|C Chain C, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|D Chain D, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|E Chain E, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|F Chain F, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|G Chain G, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|H Chain H, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
Length = 170
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 86/172 (50%), Gaps = 37/172 (21%)
Query: 148 PRWVRESPMTLTYAFSKTDMIDYI-DLT--DVKAAFKSSFQRWSSVIPVNFTEIYDYDSA 204
PR ++ S M LTY +++Y D+T +V+ AFK +F+ WS V P+NFT ++D A
Sbjct: 8 PRTLKWSKMNLTYR-----IVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIA 61
Query: 205 DIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVD 243
DI I F +HGD PF HFD ETW S +
Sbjct: 62 DIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETW------TSSSKGYN 115
Query: 244 LESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTR-KVDLKVDDVEGVQALYG 294
L VA HE GH LGL H+ A+M+P T + L DDV+G+Q+LYG
Sbjct: 116 LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 167
>pdb|3LJZ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|C Chain C, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|D Chain D, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3O2X|A Chain A, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|B Chain B, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|C Chain C, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|D Chain D, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
Length = 164
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 86/172 (50%), Gaps = 37/172 (21%)
Query: 148 PRWVRESPMTLTYAFSKTDMIDYI-DLT--DVKAAFKSSFQRWSSVIPVNFTEIYDYDSA 204
PR ++ S M LTY +++Y D+T +V+ AFK +F+ WS V P+NFT ++D A
Sbjct: 5 PRTLKWSKMNLTYR-----IVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIA 58
Query: 205 DIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVD 243
DI I F +HGD PF HFD ETW S +
Sbjct: 59 DIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETW------TSSSKGYN 112
Query: 244 LESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTR-KVDLKVDDVEGVQALYG 294
L VA HE GH LGL H+ A+M+P T + L DDV+G+Q+LYG
Sbjct: 113 LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|2D1N|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1N|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
Length = 166
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 86/172 (50%), Gaps = 37/172 (21%)
Query: 148 PRWVRESPMTLTYAFSKTDMIDYI-DLT--DVKAAFKSSFQRWSSVIPVNFTEIYDYDSA 204
PR ++ S M LTY +++Y D+T +V+ AFK +F+ WS V P+NFT ++D A
Sbjct: 5 PRTLKWSKMNLTYR-----IVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIA 58
Query: 205 DIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVD 243
DI I F +HGD PF HFD ETW S +
Sbjct: 59 DIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETW------TSSSKGYN 112
Query: 244 LESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTR-KVDLKVDDVEGVQALYG 294
L VA HE GH LGL H+ A+M+P T + L DDV+G+Q+LYG
Sbjct: 113 LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|1FLS|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1FM1|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1ZTQ|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|2E2D|A Chain A, Flexibility And Variability Of Timp Binding: X-Ray
Structure Of The Complex Between Collagenase-3MMP-13 And
Timp-2
pdb|2PJT|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
Length = 165
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 86/172 (50%), Gaps = 37/172 (21%)
Query: 148 PRWVRESPMTLTYAFSKTDMIDYI-DLT--DVKAAFKSSFQRWSSVIPVNFTEIYDYDSA 204
PR ++ S M LTY +++Y D+T +V+ AFK +F+ WS V P+NFT ++D A
Sbjct: 5 PRTLKWSKMNLTYR-----IVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIA 58
Query: 205 DIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVD 243
DI I F +HGD PF HFD ETW S +
Sbjct: 59 DIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETW------TSSSKGYN 112
Query: 244 LESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTR-KVDLKVDDVEGVQALYG 294
L VA HE GH LGL H+ A+M+P T + L DDV+G+Q+LYG
Sbjct: 113 LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|3KEC|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEC|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEJ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEJ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
Length = 167
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 86/172 (50%), Gaps = 37/172 (21%)
Query: 148 PRWVRESPMTLTYAFSKTDMIDYI-DLT--DVKAAFKSSFQRWSSVIPVNFTEIYDYDSA 204
PR ++ S M LTY +++Y D+T +V+ AFK +F+ WS V P+NFT ++D A
Sbjct: 5 PRTLKWSKMNLTYR-----IVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIA 58
Query: 205 DIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVD 243
DI I F +HGD PF HFD ETW S +
Sbjct: 59 DIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETW------TSSSKGYN 112
Query: 244 LESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTR-KVDLKVDDVEGVQALYG 294
L VA HE GH LGL H+ A+M+P T + L DDV+G+Q+LYG
Sbjct: 113 LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|456C|A Chain A, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|456C|B Chain B, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|830C|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|830C|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|1YOU|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
pdb|1YOU|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
Length = 168
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 86/172 (50%), Gaps = 37/172 (21%)
Query: 148 PRWVRESPMTLTYAFSKTDMIDYI-DLT--DVKAAFKSSFQRWSSVIPVNFTEIYDYDSA 204
PR ++ S M LTY +++Y D+T +V+ AFK +F+ WS V P+NFT ++D A
Sbjct: 5 PRTLKWSKMNLTYR-----IVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIA 58
Query: 205 DIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVD 243
DI I F +HGD PF HFD ETW S +
Sbjct: 59 DIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETW------TSSSKGYN 112
Query: 244 LESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTR-KVDLKVDDVEGVQALYG 294
L VA HE GH LGL H+ A+M+P T + L DDV+G+Q+LYG
Sbjct: 113 LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|1EUB|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Collagenase-3 (Mmp-13) Complexed To A Potent
Non-Peptidic Sulfonamide Inhibitor
pdb|1XUC|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUC|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|3ELM|A Chain A, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3ELM|B Chain B, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3I7G|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7G|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|2YIG|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|2YIG|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|3ZXH|A Chain A, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
pdb|3ZXH|B Chain B, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
Length = 171
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 89/179 (49%), Gaps = 40/179 (22%)
Query: 148 PRWVRESPMTLTYAFSKTDMIDYI-DLT--DVKAAFKSSFQRWSSVIPVNFTEIYDYDSA 204
PR ++ S M LTY +++Y D+T +V+ AFK +F+ WS V P+NFT ++D A
Sbjct: 5 PRTLKWSKMNLTYR-----IVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIA 58
Query: 205 DIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVD 243
DI I F +HGD PF HFD ETW S +
Sbjct: 59 DIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETW------TSSSKGYN 112
Query: 244 LESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTR-KVDLKVDDVEGVQALYG---SNPN 298
L VA HE GH LGL H+ A+M+P T + L DDV+G+Q+LYG +PN
Sbjct: 113 LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYGPGDEDPN 171
>pdb|2XS4|A Chain A, Structure Of Karilysin Catalytic Mmp Domain In Complex
With Magnesium
Length = 167
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 32/145 (22%)
Query: 174 TDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF------------ 221
T+ + A +S+F WS ++F ++Y+ + ADI I + G+HGDG PF
Sbjct: 27 TERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNTGILAHAFY 86
Query: 222 ------------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMY 269
HFD E W+++ +DL +VA HEIGH+LG+ H++V A+MY
Sbjct: 87 PPPAGGNYAGHLHFDDDENWSINGS------GIDLITVAAHEIGHLLGIEHSNVSSALMY 140
Query: 270 PSLTPRTRKVDLKVDDVEGVQALYG 294
P T R++D DD V LYG
Sbjct: 141 PYYTGIKRQLD--NDDCLAVWDLYG 163
>pdb|4A7B|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|4A7B|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|3TVC|A Chain A, Human Mmp13 In Complex With L-Glutamate Motif Inhibitor
Length = 169
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 86/172 (50%), Gaps = 37/172 (21%)
Query: 148 PRWVRESPMTLTYAFSKTDMIDYI-DLT--DVKAAFKSSFQRWSSVIPVNFTEIYDYDSA 204
PR ++ S M LTY +++Y D+T +V+ AFK +F+ WS V P+NFT ++D A
Sbjct: 5 PRTLKWSKMNLTYR-----IVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIA 58
Query: 205 DIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVD 243
DI I F +HGD PF HFD ETW S +
Sbjct: 59 DIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETW------TSSSKGYN 112
Query: 244 LESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTR-KVDLKVDDVEGVQALYG 294
L VA HE GH LGL H+ A+M+P T + L DDV+G+Q+LYG
Sbjct: 113 LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|2XS3|A Chain A, Structure Of Karilysin Catalytic Mmp Domain
pdb|2XS3|B Chain B, Structure Of Karilysin Catalytic Mmp Domain
Length = 166
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 32/145 (22%)
Query: 174 TDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF------------ 221
T+ + A +S+F WS ++F ++Y+ + ADI I + G+HGDG PF
Sbjct: 27 TERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNTGILAHAFY 86
Query: 222 ------------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMY 269
HFD E W+++ +DL +VA HEIGH+LG+ H++V A+MY
Sbjct: 87 PPPAGGNYAGHLHFDDDENWSINGS------GIDLITVAAHEIGHLLGIEHSNVSSALMY 140
Query: 270 PSLTPRTRKVDLKVDDVEGVQALYG 294
P T R++D DD V LYG
Sbjct: 141 PYYTGIKRQLD--NDDCLAVWDLYG 163
>pdb|1HOV|A Chain A, Solution Structure Of A Catalytic Domain Of Mmp-2
Complexed With Sc-74020
Length = 163
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 81/178 (45%), Gaps = 40/178 (22%)
Query: 141 YSYFYGKPRWVRESPMTLTYAFSKTDMIDY---IDLTDVKAAFKSSFQRWSSVIPVNFTE 197
Y++F KP+W + +TY +I Y +D V AF +FQ WS V P+ F+
Sbjct: 2 YNFFPRKPKWDKNQ---ITYR-----IIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSR 53
Query: 198 IYDYDSADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESV 236
I+D ADI I F +HGDG PF HFD E W
Sbjct: 54 IHD-GEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELW------T 106
Query: 237 KSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVDLKVDDVEGVQALYG 294
+ L VA HE GH +GL H+ A+M P T T+ L DD++G+Q LYG
Sbjct: 107 NTSANYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYT-YTKNFRLSQDDIKGIQELYG 163
>pdb|1BIW|A Chain A, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BIW|B Chain B, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BQO|A Chain A, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1BQO|B Chain B, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1B3D|A Chain A, Stromelysin-1
pdb|1B3D|B Chain B, Stromelysin-1
pdb|1CQR|A Chain A, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1CQR|B Chain B, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1C3I|A Chain A, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1C3I|B Chain B, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1D8M|A Chain A, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D8M|B Chain B, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D7X|A Chain A, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D7X|B Chain B, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D8F|A Chain A, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D8F|B Chain B, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D5J|A Chain A, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1D5J|B Chain B, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1G49|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G49|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G05|A Chain A, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1G05|B Chain B, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1HY7|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1HY7|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1BM6|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Stromelysin-1 Complexed To A Potent Non-Peptidic
Inhibitor, Nmr, 20 Structures
pdb|2SRT|A Chain A, Catalytic Domain Of Human Stromelysin-1 At Ph 5.5 And 40oc
Complexed With Inhibitor
pdb|1SLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-702,842
pdb|4DPE|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4DPE|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4JA1|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
pdb|4JA1|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
Length = 173
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 86/182 (47%), Gaps = 43/182 (23%)
Query: 144 FYGKPRWVRESPMTLTYAFSKTDMIDYI-DLTD--VKAAFKSSFQRWSSVIPVNFTEIYD 200
F G P+W + LTY +++Y DL V +A + + + W V P+ F+ +Y+
Sbjct: 4 FPGIPKWRKTH---LTYR-----IVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 201 YDSADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSR 239
ADI I F +HGD PF HFD E W K
Sbjct: 56 -GEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQW------TKDT 108
Query: 240 VAVDLESVATHEIGHVLGLAHTSVKEAVMYP---SLTPRTRKVDLKVDDVEGVQALYGSN 296
+L VA HEIGH LGL H++ EA+MYP SLT TR L DD+ G+Q+LYG
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTR-FRLSQDDINGIQSLYGPP 167
Query: 297 PN 298
P+
Sbjct: 168 PD 169
>pdb|1UMS|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Ensemble Of 20 Structures
pdb|1UMT|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Average Of 20 Structures Minimized With Restraints
Length = 174
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 86/182 (47%), Gaps = 43/182 (23%)
Query: 144 FYGKPRWVRESPMTLTYAFSKTDMIDYI-DLTD--VKAAFKSSFQRWSSVIPVNFTEIYD 200
F G P+W + LTY +++Y DL V +A + + + W V P+ F+ +Y+
Sbjct: 4 FPGIPKWRKTH---LTYR-----IVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 201 YDSADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSR 239
ADI I F +HGD PF HFD E W K
Sbjct: 56 -GEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQW------TKDT 108
Query: 240 VAVDLESVATHEIGHVLGLAHTSVKEAVMYP---SLTPRTRKVDLKVDDVEGVQALYGSN 296
+L VA HEIGH LGL H++ EA+MYP SLT TR L DD+ G+Q+LYG
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTR-FRLSQDDINGIQSLYGPP 167
Query: 297 PN 298
P+
Sbjct: 168 PD 169
>pdb|3OHO|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4- Methylphenylsulfonamido)acetamide
Length = 169
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 86/182 (47%), Gaps = 43/182 (23%)
Query: 144 FYGKPRWVRESPMTLTYAFSKTDMIDYI-DLTD--VKAAFKSSFQRWSSVIPVNFTEIYD 200
F G P+W + LTY +++Y DL V +A + + + W V P+ F+ +Y+
Sbjct: 4 FPGIPKWRKTH---LTYR-----IVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 201 YDSADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSR 239
ADI I F +HGD PF HFD E W K
Sbjct: 56 -GEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQW------TKDT 108
Query: 240 VAVDLESVATHEIGHVLGLAHTSVKEAVMYP---SLTPRTRKVDLKVDDVEGVQALYGSN 296
+L VA HEIGH LGL H++ EA+MYP SLT TR L DD+ G+Q+LYG
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTR-FRLSQDDINGIQSLYGPP 167
Query: 297 PN 298
P+
Sbjct: 168 PD 169
>pdb|2D1O|A Chain A, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1O|B Chain B, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
Length = 171
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 86/182 (47%), Gaps = 43/182 (23%)
Query: 144 FYGKPRWVRESPMTLTYAFSKTDMIDYI-DLTD--VKAAFKSSFQRWSSVIPVNFTEIYD 200
F G P+W + LTY +++Y DL V +A + + + W V P+ F+ +Y+
Sbjct: 4 FPGIPKWRKTH---LTYR-----IVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 201 YDSADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSR 239
ADI I F +HGD PF HFD E W K
Sbjct: 56 -GEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQW------TKDT 108
Query: 240 VAVDLESVATHEIGHVLGLAHTSVKEAVMYP---SLTPRTRKVDLKVDDVEGVQALYGSN 296
+L VA HEIGH LGL H++ EA+MYP SLT TR L DD+ G+Q+LYG
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTR-FRLSQDDINGIQSLYGPP 167
Query: 297 PN 298
P+
Sbjct: 168 PD 169
>pdb|1CAQ|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-Peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1CIZ|A Chain A, X-ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1G4K|A Chain A, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|B Chain B, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|C Chain C, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1OO9|A Chain A, Orientation In Solution Of Mmp-3 Catalytic Domain And N-
Timp-1 From Residual Dipolar Couplings
pdb|3USN|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Stromelysin-1 Inhibited With The Thiadiazole Inhibitor
Ipnu-107859, Nmr, 1 Structure
Length = 168
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 85/181 (46%), Gaps = 43/181 (23%)
Query: 144 FYGKPRWVRESPMTLTYAFSKTDMIDYI-DLTD--VKAAFKSSFQRWSSVIPVNFTEIYD 200
F G P+W + LTY +++Y DL V +A + + + W V P+ F+ +Y+
Sbjct: 4 FPGIPKWRKTH---LTYR-----IVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 201 YDSADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSR 239
ADI I F +HGD PF HFD E W K
Sbjct: 56 -GEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQW------TKDT 108
Query: 240 VAVDLESVATHEIGHVLGLAHTSVKEAVMYP---SLTPRTRKVDLKVDDVEGVQALYGSN 296
+L VA HEIGH LGL H++ EA+MYP SLT TR L DD+ G+Q+LYG
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTR-FRLSQDDINGIQSLYGPP 167
Query: 297 P 297
P
Sbjct: 168 P 168
>pdb|1C8T|A Chain A, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
pdb|1C8T|B Chain B, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
Length = 167
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 86/182 (47%), Gaps = 43/182 (23%)
Query: 144 FYGKPRWVRESPMTLTYAFSKTDMIDYI-DLTD--VKAAFKSSFQRWSSVIPVNFTEIYD 200
F G P+W + LTY +++Y DL V +A + + + W V P+ F+ +Y+
Sbjct: 1 FPGIPKWRKTH---LTYR-----IVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 52
Query: 201 YDSADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSR 239
ADI I F +HGD PF HFD E W K
Sbjct: 53 -GEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQW------TKDT 105
Query: 240 VAVDLESVATHEIGHVLGLAHTSVKEAVMYP---SLTPRTRKVDLKVDDVEGVQALYGSN 296
+L VA H+IGH LGL H++ EA+MYP SLT TR L DD+ G+Q+LYG
Sbjct: 106 TGTNLFLVAAHQIGHSLGLFHSANTEALMYPLYHSLTDLTR-FRLSQDDINGIQSLYGPP 164
Query: 297 PN 298
P+
Sbjct: 165 PD 166
>pdb|2DDY|A Chain A, Solution Structure Of Matrilysin (Mmp-7) Complexed To
Constraint Conformational Sulfonamide Inhibitor
Length = 173
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 81/181 (44%), Gaps = 35/181 (19%)
Query: 141 YSYFYGKPRWVRESPMTLTYAF-SKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIY 199
YS F P+W + +TY S T + +I V + W IP++F ++
Sbjct: 1 YSLFPNSPKWTSK---VVTYRIVSYTRDLPHIT---VDRLVSKALNMWGKEIPLHFRKVV 54
Query: 200 DYDSADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKS 238
+ +ADI IGF G HGD PF HFD E W + S
Sbjct: 55 -WGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERW-----TDGS 108
Query: 239 RVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSL-TPRTRKVDLKVDDVEGVQALYGSNP 297
+ ++ ATHE+GH LG+ H+S AVMYP+ + L DD++G+Q LYG
Sbjct: 109 SLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRS 168
Query: 298 N 298
N
Sbjct: 169 N 169
>pdb|1MMP|A Chain A, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMP|B Chain B, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMQ|A Chain A, Matrilysin Complexed With Hydroxamate Inhibitor
pdb|1MMR|A Chain A, Matrilysin Complexed With Sulfodiimine Inhibitor
Length = 170
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 81/181 (44%), Gaps = 35/181 (19%)
Query: 141 YSYFYGKPRWVRESPMTLTYAF-SKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIY 199
YS F P+W + +TY S T + +I V + W IP++F ++
Sbjct: 1 YSLFPNSPKWTSK---VVTYRIVSYTRDLPHIT---VDRLVSKALNMWGKEIPLHFRKVV 54
Query: 200 DYDSADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKS 238
+ +ADI IGF G HGD PF HFD E W + S
Sbjct: 55 -WGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERW-----TDGS 108
Query: 239 RVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSL-TPRTRKVDLKVDDVEGVQALYGSNP 297
+ ++ ATHE+GH LG+ H+S AVMYP+ + L DD++G+Q LYG
Sbjct: 109 SLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRS 168
Query: 298 N 298
N
Sbjct: 169 N 169
>pdb|1QIA|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 162
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 70/146 (47%), Gaps = 32/146 (21%)
Query: 176 VKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF-------------- 221
V +A + + + W V P+ F+ +Y+ ADI I F +HGD PF
Sbjct: 25 VDSAVEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGNVLAHAYAPG 83
Query: 222 -------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYP---S 271
HFD E W K +L VA HEIGH LGL H++ EA+MYP S
Sbjct: 84 PGINGDAHFDDDEQW------TKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHS 137
Query: 272 LTPRTRKVDLKVDDVEGVQALYGSNP 297
LT TR L DD+ G+Q+LYG P
Sbjct: 138 LTDLTR-FRLSQDDINGIQSLYGPPP 162
>pdb|2Y6D|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 174
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 81/181 (44%), Gaps = 35/181 (19%)
Query: 141 YSYFYGKPRWVRESPMTLTYAF-SKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIY 199
YS F P+W + +TY S T + +I V + W IP++F ++
Sbjct: 2 YSLFPNSPKWTSK---VVTYRIVSYTRDLPHIT---VDRLVSKALNMWGKEIPLHFRKVV 55
Query: 200 DYDSADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKS 238
+ +ADI IGF G HGD PF HFD E W + S
Sbjct: 56 -WGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERW-----TDGS 109
Query: 239 RVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSL-TPRTRKVDLKVDDVEGVQALYGSNP 297
+ ++ ATHE+GH LG+ H+S AVMYP+ + L DD++G+Q LYG
Sbjct: 110 SLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRS 169
Query: 298 N 298
N
Sbjct: 170 N 170
>pdb|1GKC|A Chain A, Mmp9-inhibitor Complex
pdb|1GKC|B Chain B, Mmp9-inhibitor Complex
Length = 163
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 66/139 (47%), Gaps = 28/139 (20%)
Query: 176 VKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF-------------- 221
+ AF +F WS+V P+ FT +Y D ADI I F +HGDG PF
Sbjct: 32 IDDAFARAFALWSAVTPLTFTRVYSRD-ADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPG 90
Query: 222 -------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSLTP 274
HFD E W S+ L VA HE GH LGL H+SV EA+MYP +
Sbjct: 91 PGIQGDAHFDDDELW-----SLGKGQGYSLFLVAAHEFGHALGLDHSSVPEALMYP-MYR 144
Query: 275 RTRKVDLKVDDVEGVQALY 293
T L DDV G++ LY
Sbjct: 145 FTEGPPLHKDDVNGIRHLY 163
>pdb|1CK7|A Chain A, Gelatinase A (Full-Length)
pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex
pdb|1GXD|B Chain B, Prommp-2TIMP-2 Complex
Length = 631
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 66/133 (49%), Gaps = 21/133 (15%)
Query: 92 LQSAVVSYQTKLGLPVTGKLDSETISTIMSPRCGVSDTSFRQKIHATKRYSYFYGKPRWV 151
L+ + Q GLP TG LD TI T+ PRCG D + Y++F KP+W
Sbjct: 41 LKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVA---------NYNFFPRKPKWD 91
Query: 152 RESPMTLTYAFSKTDMIDY---IDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHI 208
+ +TY +I Y +D V AF +FQ WS V P+ F+ I+D ADI I
Sbjct: 92 KNQ---ITYR-----IIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHD-GEADIMI 142
Query: 209 GFYHGDHGDGQPF 221
F +HGDG PF
Sbjct: 143 NFGRWEHGDGYPF 155
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 247 VATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVDLKVDDVEGVQALYGSNPN 298
VA H GH +GL H+ A+M P T T+ L DD++G+Q LYG++P+
Sbjct: 371 VAAHAFGHAMGLEHSQDPGALMAPIYT-YTKNFRLSQDDIKGIQELYGASPD 421
>pdb|1USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-142372
pdb|2USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-141803
Length = 165
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 84/178 (47%), Gaps = 43/178 (24%)
Query: 144 FYGKPRWVRESPMTLTYAFSKTDMIDYI-DLTD--VKAAFKSSFQRWSSVIPVNFTEIYD 200
F G P+W + LTY +++Y DL V +A + + + W V P+ F+ +Y+
Sbjct: 4 FPGIPKWRKTH---LTYR-----IVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 201 YDSADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSR 239
ADI I F +HGD PF HFD E W K
Sbjct: 56 -GEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQW------TKDT 108
Query: 240 VAVDLESVATHEIGHVLGLAHTSVKEAVMYP---SLTPRTRKVDLKVDDVEGVQALYG 294
+L VA HEIGH LGL H++ EA+MYP SLT TR L DD+ G+Q+LYG
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTR-FRLSQDDINGIQSLYG 165
>pdb|1B8Y|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexed With Non-Peptide Inhibitors: Implications For
Inhibitor Selectivity
pdb|3OHL|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4-
Methoxy-N-(Pyridine-3-
Ylmethyl)phenylsulfonamido)acetamide
Length = 167
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 84/178 (47%), Gaps = 43/178 (24%)
Query: 144 FYGKPRWVRESPMTLTYAFSKTDMIDYI-DLTD--VKAAFKSSFQRWSSVIPVNFTEIYD 200
F G P+W + LTY +++Y DL V +A + + + W V P+ F+ +Y+
Sbjct: 4 FPGIPKWRKTH---LTYR-----IVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 201 YDSADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSR 239
ADI I F +HGD PF HFD E W K
Sbjct: 56 -GEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQW------TKDT 108
Query: 240 VAVDLESVATHEIGHVLGLAHTSVKEAVMYP---SLTPRTRKVDLKVDDVEGVQALYG 294
+L VA HEIGH LGL H++ EA+MYP SLT TR L DD+ G+Q+LYG
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTR-FRLSQDDINGIQSLYG 165
>pdb|1UEA|A Chain A, Mmp-3TIMP-1 Complex
pdb|1UEA|C Chain C, Mmp-3TIMP-1 Complex
Length = 173
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 85/182 (46%), Gaps = 43/182 (23%)
Query: 144 FYGKPRWVRESPMTLTYAFSKTDMIDYI-DLTD--VKAAFKSSFQRWSSVIPVNFTEIYD 200
F G P+W + LTY +++Y DL V +A + + + W V P+ F+ +Y+
Sbjct: 4 FPGIPKWRKTH---LTYR-----IVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 201 YDSADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSR 239
ADI I F +HGD PF HFD E W K
Sbjct: 56 -GEADIXISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQW------TKDT 108
Query: 240 VAVDLESVATHEIGHVLGLAHTSVKEAVMYP---SLTPRTRKVDLKVDDVEGVQALYGSN 296
+L VA HEIGH LGL H++ EA+ YP SLT TR L DD+ G+Q+LYG
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALXYPLYHSLTDLTR-FRLSQDDINGIQSLYGPP 167
Query: 297 PN 298
P+
Sbjct: 168 PD 169
>pdb|1HV5|A Chain A, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|B Chain B, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|C Chain C, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|D Chain D, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|E Chain E, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|F Chain F, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
Length = 165
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 65/140 (46%), Gaps = 28/140 (20%)
Query: 176 VKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF-------------- 221
V+ + Q WS V P+ FTE+++ ADI I F HGD PF
Sbjct: 30 VRQTVAEALQVWSEVTPLTFTEVHE-GRADIMIDFARYWHGDNLPFDGPGGILAHAFFPK 88
Query: 222 -------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSLTP 274
HFD ETW ++ DL VA HE GHVLGL HT+ +A+M P T
Sbjct: 89 THREGDVHFDYDETW-----TIGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTF 143
Query: 275 RTRKVDLKVDDVEGVQALYG 294
R + L DD G+Q LYG
Sbjct: 144 RY-PLSLSPDDRRGIQHLYG 162
>pdb|1EAK|A Chain A, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|B Chain B, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|C Chain C, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|D Chain D, Catalytic Domain Of Prommp-2 E404q Mutant
Length = 421
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 73/169 (43%), Gaps = 42/169 (24%)
Query: 92 LQSAVVSYQTKLGLPVTGKLDSETISTIMSPRCGVSDTSFRQKIHATKRYSYFYGKPRWV 151
L+ + Q GLP TG LD TI T+ PRCG D + Y++F KP+W
Sbjct: 39 LKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVA---------NYNFFPRKPKWD 89
Query: 152 RESPMTLTYAFSKTDMIDY---IDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHI 208
+ +TY +I Y +D V AF +FQ WS V P+ F+ I+D ADI I
Sbjct: 90 KNQ---ITYR-----IIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHD-GEADIMI 140
Query: 209 GFYHGDHGDGQPF---------------------HFDAAETWAVDMESV 236
F +HGDG PF HFD E W + V
Sbjct: 141 NFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQV 189
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 247 VATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVDLKVDDVEGVQALYGSNPN 298
VA H+ GH +GL H+ A+M P T T+ L DD++G+Q LYG++P+
Sbjct: 369 VAAHQFGHAMGLEHSQDPGALMAPIYT-YTKNFRLSQDDIKGIQELYGASPD 419
>pdb|1GKD|A Chain A, Mmp9 Active Site Mutant-Inhibitor Complex
pdb|1GKD|B Chain B, Mmp9 Active Site Mutant-Inhibitor Complex
Length = 163
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 66/139 (47%), Gaps = 28/139 (20%)
Query: 176 VKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF-------------- 221
+ AF +F WS+V P+ FT +Y D ADI I F +HGDG PF
Sbjct: 32 IDDAFARAFALWSAVTPLTFTRVYSRD-ADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPG 90
Query: 222 -------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSLTP 274
HFD E W S+ L VA H+ GH LGL H+SV EA+MYP +
Sbjct: 91 PGIQGDAHFDDDELW-----SLGKGQGYSLFLVAAHQFGHALGLDHSSVPEALMYP-MYR 144
Query: 275 RTRKVDLKVDDVEGVQALY 293
T L DDV G++ LY
Sbjct: 145 FTEGPPLHKDDVNGIRHLY 163
>pdb|2OVX|A Chain A, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVX|B Chain B, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVZ|A Chain A, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OVZ|B Chain B, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OW0|A Chain A, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW0|B Chain B, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW1|A Chain A, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW1|B Chain B, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW2|A Chain A, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
pdb|2OW2|B Chain B, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
Length = 159
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 66/139 (47%), Gaps = 28/139 (20%)
Query: 176 VKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF-------------- 221
+ AF +F WS+V P+ FT +Y D ADI I F +HGDG PF
Sbjct: 28 IDDAFARAFALWSAVTPLTFTRVYSRD-ADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPG 86
Query: 222 -------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSLTP 274
HFD E W S+ L VA H+ GH LGL H+SV EA+MYP +
Sbjct: 87 PGIQGDAHFDDDELW-----SLGKGQGYSLFLVAAHQFGHALGLDHSSVPEALMYP-MYR 140
Query: 275 RTRKVDLKVDDVEGVQALY 293
T L DDV G++ LY
Sbjct: 141 FTEGPPLHKDDVNGIRHLY 159
>pdb|1QIC|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 161
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 69/143 (48%), Gaps = 32/143 (22%)
Query: 176 VKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF-------------- 221
V +A + + + W V P+ F+ +Y+ ADI I F +HGD PF
Sbjct: 25 VDSAVEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGNVLAHAYAPG 83
Query: 222 -------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYP---S 271
HFD E W K +L VA HEIGH LGL H++ EA+MYP S
Sbjct: 84 PGINGDAHFDDDEQW------TKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHS 137
Query: 272 LTPRTRKVDLKVDDVEGVQALYG 294
LT TR L DD+ G+Q+LYG
Sbjct: 138 LTDLTR-FRLSQDDINGIQSLYG 159
>pdb|1HFS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-764,004
Length = 160
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 69/143 (48%), Gaps = 32/143 (22%)
Query: 176 VKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF-------------- 221
V +A + + + W V P+ F+ +Y+ ADI I F +HGD PF
Sbjct: 26 VDSAVEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGNVLAHAYAPG 84
Query: 222 -------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYP---S 271
HFD E W K +L VA HEIGH LGL H++ EA+MYP S
Sbjct: 85 PGINGDAHFDDDEQW------TKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHS 138
Query: 272 LTPRTRKVDLKVDDVEGVQALYG 294
LT TR L DD+ G+Q+LYG
Sbjct: 139 LTDLTR-FRLSQDDINGIQSLYG 160
>pdb|2JNP|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|2JT5|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (mmp-3)
In The Presence Of
N-hydroxy-2-[n-(2-hydroxyethyl)biphenyl-4- Sulfonamide]
Hydroxamic Acid (mlc88)
pdb|2JT6|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of 3-4'-Cyanobyphenyl-4-Yloxy)-N-
Hdydroxypropionamide (Mmp-3 Inhibitor Vii)
Length = 161
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 69/143 (48%), Gaps = 32/143 (22%)
Query: 176 VKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF-------------- 221
V +A + + + W V P+ F+ +Y+ ADI I F +HGD PF
Sbjct: 26 VDSAVEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGNVLAHAYAPG 84
Query: 222 -------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYP---S 271
HFD E W K +L VA HEIGH LGL H++ EA+MYP S
Sbjct: 85 PGINGDAHFDDDEQW------TKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHS 138
Query: 272 LTPRTRKVDLKVDDVEGVQALYG 294
LT TR L DD+ G+Q+LYG
Sbjct: 139 LTDLTR-FRLSQDDINGIQSLYG 160
>pdb|2Y6C|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 165
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 79/176 (44%), Gaps = 35/176 (19%)
Query: 141 YSYFYGKPRWVRESPMTLTYAF-SKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIY 199
YS F P+W + +TY S T + +I V + W IP++F ++
Sbjct: 2 YSLFPNSPKWTSK---VVTYRIVSYTRDLPHIT---VDRLVSKALNMWGKEIPLHFRKVV 55
Query: 200 DYDSADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKS 238
+ +ADI IGF G HGD PF HFD E W + S
Sbjct: 56 -WGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERW-----TDGS 109
Query: 239 RVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSL-TPRTRKVDLKVDDVEGVQALY 293
+ ++ ATHE+GH LG+ H+S AVMYP+ + L DD++G+Q LY
Sbjct: 110 SLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 165
>pdb|3BA0|A Chain A, Crystal Structure Of Full-Length Human Mmp-12
Length = 365
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 82/183 (44%), Gaps = 46/183 (25%)
Query: 171 IDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF--------- 221
++ DV A + +FQ WS+V P+ F++I + ADI + F G HGD F
Sbjct: 20 MNREDVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHGDDHAFDGKGGILAH 78
Query: 222 ------------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMY 269
HFD E W +L A HEIGH LGL H+S +AVM+
Sbjct: 79 AFGPGSGIGGDAHFDEDEFWTT------HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMF 132
Query: 270 PSLTPRTRKVD-----LKVDDVEGVQALYGS--------NPNFKFSSLLESENFSNDAIA 316
P+ + VD L DD+ G+Q+LYG NP+ +L + N S DA+
Sbjct: 133 PTY----KYVDINTFRLSADDIRGIQSLYGDPKENQRLPNPDNSEPALCDP-NLSFDAVT 187
Query: 317 LKG 319
G
Sbjct: 188 TVG 190
>pdb|1Q3A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
Length = 165
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 82/180 (45%), Gaps = 41/180 (22%)
Query: 141 YSYFYGKPRWVRESPMTLTYAFSKTDMIDYI-DLTD--VKAAFKSSFQRWSSVIPVNFTE 197
+S F G P+W + LTY +++Y DL V +A + + + W V P+ F+
Sbjct: 1 FSSFPGMPKWRK---THLTYR-----IVNYTPDLPRDAVDSAIEKALKVWEEVTPLTFSR 52
Query: 198 IYDYDSADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESV 236
+Y+ ADI I F +HGD F HFD E W D
Sbjct: 53 LYE-GEADIMISFAVKEHGDNYSFDGPGHSLAHAYPPGPGLYGDIHFDDDEKWTEDAS-- 109
Query: 237 KSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVDLKV--DDVEGVQALYG 294
+L VA HE+GH LGL H++ EA+MYP T ++ DDV G+Q+LYG
Sbjct: 110 ----GTNLFLVAAHELGHSLGLFHSANTEALMYPLYNSFTELAQFRLSQDDVNGIQSLYG 165
>pdb|3MA2|D Chain D, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
pdb|3MA2|A Chain A, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
Length = 181
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 65/150 (43%), Gaps = 32/150 (21%)
Query: 179 AFKSSFQRWSSVIPVNFTEI-YDY------DSADIHIGFYHGDHGDGQPF---------- 221
A + +F+ W S P+ F E+ Y Y ADI I F G HGD PF
Sbjct: 32 AIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLAHA 91
Query: 222 -----------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYP 270
HFD+AE W V E + D+ VA HE+GH LGL H+S A+M P
Sbjct: 92 YFPGPNIGGDTHFDSAEPWTVRNEDLNGN---DIFLVAVHELGHALGLEHSSDPSAIMAP 148
Query: 271 SLT-PRTRKVDLKVDDVEGVQALYGSNPNF 299
T L DD G+Q LYG F
Sbjct: 149 FYQWMDTENFVLPDDDRRGIQQLYGGESGF 178
>pdb|3V96|B Chain B, Complex Of Matrix Metalloproteinase-10 Catalytic Domain
(Mmp-10cd) With Tissue Inhibitor Of Metalloproteinases-1
(Timp-1)
Length = 165
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 82/180 (45%), Gaps = 41/180 (22%)
Query: 141 YSYFYGKPRWVRESPMTLTYAFSKTDMIDYI-DLTD--VKAAFKSSFQRWSSVIPVNFTE 197
+S F G P+W + LTY +++Y DL V +A + + + W V P+ F+
Sbjct: 1 FSSFPGMPKWRK---THLTYR-----IVNYTPDLPRDAVDSAIEKALKVWEEVTPLTFSR 52
Query: 198 IYDYDSADIHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESV 236
+Y+ ADI I F +HGD F HFD E W D
Sbjct: 53 LYE-GEADIMISFAVKEHGDFYSFDGPGHSLAHAYPPGPGLYGDIHFDDDEKWTEDAS-- 109
Query: 237 KSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVDLKV--DDVEGVQALYG 294
+L VA HE+GH LGL H++ EA+MYP T ++ DDV G+Q+LYG
Sbjct: 110 ----GTNLFLVAAHELGHSLGLFHSANTEALMYPLYNSFTELAQFRLSQDDVNGIQSLYG 165
>pdb|1OS2|A Chain A, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|B Chain B, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|C Chain C, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|D Chain D, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|E Chain E, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|F Chain F, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS9|A Chain A, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|B Chain B, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|C Chain C, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|D Chain D, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|E Chain E, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|F Chain F, Binary Enzyme-Product Complexes Of Human Mmp12
Length = 165
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 70/150 (46%), Gaps = 37/150 (24%)
Query: 171 IDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF--------- 221
++ DV A + +FQ WS+V P+ F++I + ADI + F G HGD F
Sbjct: 22 MNREDVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHGDDHAFDGKGGILAH 80
Query: 222 ------------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMY 269
HFD E W +L A HEIGH LGL H+S +AVM+
Sbjct: 81 AFGPGSGIGGDAHFDEDEFWTT------HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMF 134
Query: 270 PSLTPRTRKVD-----LKVDDVEGVQALYG 294
P+ + VD L DD+ G+Q+LYG
Sbjct: 135 PTY----KYVDINTFRLSADDIRGIQSLYG 160
>pdb|1RMZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor Nngh At 1.3 A Resolution
pdb|2HU6|A Chain A, Crystal Structure Of Human Mmp-12 In Complex With
Acetohydroxamic Acid And A Bicyclic Inhibitor
pdb|2OXU|A Chain A, Uninhibited Form Of Human Mmp-12
pdb|2OXW|A Chain A, Human Mmp-12 Complexed With The Peptide Iag
pdb|2OXZ|A Chain A, Human Mmp-12 In Complex With Two Peptides Pqg And Iag
pdb|1YCM|A Chain A, Solution Structure Of Matrix Metalloproteinase 12 (Mmp12)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|1Z3J|A Chain A, Solution Structure Of Mmp12 In The Presence Of
N-Isobutyl-N- 4-Methoxyphenylsulfonyl]glycyl Hydroxamic
Acid (Nngh)
pdb|1Y93|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With Acetohydroxamic Acid At Atomic Resolution
pdb|3LIK|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIL|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIR|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LJG|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3TS4|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|3TSK|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4EFS|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4GQL|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470.1
pdb|4GR0|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470b
pdb|4GR3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470a
Length = 159
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 68/146 (46%), Gaps = 37/146 (25%)
Query: 175 DVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF------------- 221
DV A + +FQ WS+V P+ F++I + ADI + F G HGD F
Sbjct: 25 DVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHGDDHAFDGKGGILAHAFGP 83
Query: 222 --------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSLT 273
HFD E W +L A HEIGH LGL H+S +AVM+P+
Sbjct: 84 GSGIGGDAHFDEDEFWTT------HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY- 136
Query: 274 PRTRKVD-----LKVDDVEGVQALYG 294
+ VD L DD+ G+Q+LYG
Sbjct: 137 ---KYVDINTFRLSADDIRGIQSLYG 159
>pdb|2K9C|A Chain A, Paramagnetic Shifts In Solid-State Nmr Of Proteins To
Elicit Structural Information
pdb|2KRJ|A Chain A, High-Resolution Solid-State Nmr Structure Of A 17.6 Kda
Prot
Length = 152
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 68/146 (46%), Gaps = 37/146 (25%)
Query: 175 DVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF------------- 221
DV A + +FQ WS+V P+ F++I + ADI + F G HGD F
Sbjct: 18 DVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHGDDHAFDGKGGILAHAFGP 76
Query: 222 --------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSLT 273
HFD E W +L A HEIGH LGL H+S +AVM+P+
Sbjct: 77 GSGIGGDAHFDEDEFWTT------HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY- 129
Query: 274 PRTRKVD-----LKVDDVEGVQALYG 294
+ VD L DD+ G+Q+LYG
Sbjct: 130 ---KYVDINTFRLSADDIRGIQSLYG 152
>pdb|3F15|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(S)-N-(2,3-Dihydroxypropyl)-4-
Methoxy-N-(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F16|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(R)-N-(3-Hydroxy-1-Nitroso-1-
Oxopropan-2-Yl)-4-Methoxybenzenesulfonamide
pdb|3F17|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Biphenyl-4-Sulfonamide
pdb|3F18|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
4-Fluoro-N-(2-Hydroxyethyl)-N-
(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F19|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor 4-Fluoro-N-(2-Nitroso-2-
Oxoethyl)benzenesulfonamide
pdb|3F1A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Benzenesulfonamide
pdb|3EHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(Biphenyl-4-
Ylsulfonamido)-4-Methylpentanoic Acid
pdb|3EHY|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(4-
Methoxyphenylsulfonamido)propanoic Acid
pdb|3LKA|A Chain A, Catalytic Domain Of Human Mmp-12 Complexed With Hydroxamic
Acid And Paramethoxy-Sulfonyl Amide
pdb|3NX7|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-(2-Hydroxyethyl)4-
Methoxyphenylsulfonamido)acetamide
pdb|3LK8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
Paramethoxy-Sulfonyl-Glycine Hydroxamate
pdb|3N2U|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(4-Methoxy-N(2-(3,4,5-Trihydroxy-6-
(Hydroxymethyl)tetrahydro-2h-Pyran-2-
Yloxy)ethyl)phenylsulfonamido) Acetamide
pdb|3N2V|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-Hydroxyethyl)biphenyl-4-
Ylsulfonamido)acetamide
pdb|3RTS|A Chain A, Human Mmp-12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2- Phenylethylsulfonamido)acetamide
pdb|3RTT|A Chain A, Human Mmp-12 Catalytic Domain In Complex
With(R)-N-Hydroxy-1-
(Phenethylsulfonyl)pyrrolidine-2-Carboxamide
pdb|4GUY|A Chain A, Human Mmp12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2-(4-
Methoxyphenyl)ethylsulfonamido)acetamide
Length = 158
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 68/146 (46%), Gaps = 37/146 (25%)
Query: 175 DVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF------------- 221
DV A + +FQ WS+V P+ F++I + ADI + F G HGD F
Sbjct: 24 DVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHGDDHAFDGKGGILAHAFGP 82
Query: 222 --------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSLT 273
HFD E W +L A HEIGH LGL H+S +AVM+P+
Sbjct: 83 GSGIGGDAHFDEDEFWTT------HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY- 135
Query: 274 PRTRKVD-----LKVDDVEGVQALYG 294
+ VD L DD+ G+Q+LYG
Sbjct: 136 ---KYVDINTFRLSADDIRGIQSLYG 158
>pdb|2K2G|A Chain A, Solution Structure Of The Wild-Type Catalytic Domain Of
Human Matrix Metalloproteinase 12 (Mmp-12) In Complex
With A Tight-Binding Inhibitor
Length = 165
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 78/175 (44%), Gaps = 42/175 (24%)
Query: 146 GKPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSAD 205
G P W R+ +T DM + DV A + +FQ WS+V P+ F++I + AD
Sbjct: 7 GGPVW-RKHYITYRINNYTPDM----NREDVDYAIRKAFQVWSNVTPLKFSKI-NTGMAD 60
Query: 206 IHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDL 244
I + F G HGD F HFD E W +L
Sbjct: 61 ILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTT------HSGGTNL 114
Query: 245 ESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVD-----LKVDDVEGVQALYG 294
A HEIGH LGL H+S +AVM+P+ + VD L DD+ G+Q+LYG
Sbjct: 115 FLTAVHEIGHSLGLGHSSDPKAVMFPTY----KYVDINTFRLSADDIRGIQSLYG 165
>pdb|2Z2D|A Chain A, Solution Structure Of Human Macrophage Elastase (Mmp-12)
Catalytic Domain Complexed With A Gamma-Keto Butanoic
Acid Inhibitor
Length = 164
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 78/175 (44%), Gaps = 42/175 (24%)
Query: 146 GKPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSAD 205
G P W R+ +T DM + DV A + +FQ WS+V P+ F++I + AD
Sbjct: 6 GGPVW-RKHYITYRINNYTPDM----NREDVDYAIRKAFQVWSNVTPLKFSKI-NTGMAD 59
Query: 206 IHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDL 244
I + F G HGD F HFD E W +L
Sbjct: 60 ILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTT------HSGGTNL 113
Query: 245 ESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVD-----LKVDDVEGVQALYG 294
A HEIGH LGL H+S +AVM+P+ + VD L DD+ G+Q+LYG
Sbjct: 114 FLTAVHEIGHSLGLGHSSDPKAVMFPTY----KYVDINTFRLSADDIRGIQSLYG 164
>pdb|1BQQ|M Chain M, Crystal Structure Of The Mt1-Mmp--Timp-2 Complex
pdb|1BUV|M Chain M, Crystal Structure Of The Mt1-Mmp-Timp-2 Complex
Length = 174
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 64/146 (43%), Gaps = 32/146 (21%)
Query: 179 AFKSSFQRWSSVIPVNFTEI-YDY------DSADIHIGFYHGDHGDGQPF---------- 221
A + +F+ W S P+ F E+ Y Y ADI I F G HGD PF
Sbjct: 30 AIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLAHA 89
Query: 222 -----------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYP 270
HFD+AE W V E + D+ VA HE+GH LGL H+S A+M P
Sbjct: 90 YFPGPNIGGDTHFDSAEPWTVRNEDLNGN---DIFLVAVHELGHALGLEHSSDPSAIMAP 146
Query: 271 SLT-PRTRKVDLKVDDVEGVQALYGS 295
T L DD G+Q LYG
Sbjct: 147 FYQWMDTENFVLPDDDRRGIQQLYGG 172
>pdb|1ROS|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
pdb|1ROS|B Chain B, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
Length = 163
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 70/150 (46%), Gaps = 37/150 (24%)
Query: 171 IDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF--------- 221
++ DV A + +FQ WS+V P+ F++I + ADI + F G HGD F
Sbjct: 20 MNREDVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHGDFHAFDGKGGILAH 78
Query: 222 ------------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMY 269
HFD E W +L A HEIGH LGL H+S +AVM+
Sbjct: 79 AFGPGSGIGGDAHFDEDEFWTT------HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMF 132
Query: 270 PSLTPRTRKVD-----LKVDDVEGVQALYG 294
P+ + VD L DD+ G+Q+LYG
Sbjct: 133 PTY----KYVDINTFRLSADDIRGIQSLYG 158
>pdb|1JIZ|A Chain A, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
pdb|1JIZ|B Chain B, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
Length = 166
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 78/175 (44%), Gaps = 42/175 (24%)
Query: 146 GKPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSAD 205
G P W R+ +T DM + DV A + +FQ WS+V P+ F++I + AD
Sbjct: 7 GGPVW-RKHYITYRINNYTPDM----NREDVDYAIRKAFQVWSNVTPLKFSKI-NTGMAD 60
Query: 206 IHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDL 244
I + F G HGD F HFD E W +L
Sbjct: 61 ILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTT------HSGGTNL 114
Query: 245 ESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVD-----LKVDDVEGVQALYG 294
A HEIGH LGL H+S +AVM+P+ + VD L DD+ G+Q+LYG
Sbjct: 115 FLTAVHEIGHSLGLGHSSDPKAVMFPTY----KYVDINTFRLSADDIRGIQSLYG 165
>pdb|2WO8|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
Length = 164
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 70/150 (46%), Gaps = 37/150 (24%)
Query: 171 IDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF--------- 221
++ DV A + +FQ WS+V P+ F++I + ADI + F G HGD F
Sbjct: 21 MNREDVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHGDFHAFDGKGGILAH 79
Query: 222 ------------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMY 269
HFD E W +L A HEIGH LGL H+S +AVM+
Sbjct: 80 AFGPGSGIGGDAHFDEDEFWTT------HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMF 133
Query: 270 PSLTPRTRKVD-----LKVDDVEGVQALYG 294
P+ + VD L DD+ G+Q+LYG
Sbjct: 134 PTY----KYVDINTFRLSADDIRGIQSLYG 159
>pdb|1UTT|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-
(1,3-Dioxo-1,3-Dihydro-2h-Isoindol-2-Yl)ethyl-4-
(4-Ethoxy[1,1-Biphenyl]-4-Yl)-4-Oxobutanoic Acid
pdb|1UTZ|A Chain A, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
pdb|1UTZ|B Chain B, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
Length = 159
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 68/146 (46%), Gaps = 37/146 (25%)
Query: 175 DVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF------------- 221
DV A + +FQ WS+V P+ F++I + ADI + F G HGD F
Sbjct: 24 DVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHGDFHAFDGKGGILAHAFGP 82
Query: 222 --------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSLT 273
HFD E W +L A HEIGH LGL H+S +AVM+P+
Sbjct: 83 GSGIGGDAHFDEDEFWTT------HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY- 135
Query: 274 PRTRKVD-----LKVDDVEGVQALYG 294
+ VD L DD+ G+Q+LYG
Sbjct: 136 ---KYVDINTFRLSADDIRGIQSLYG 158
>pdb|1L6J|A Chain A, Crystal Structure Of Human Matrix Metalloproteinase Mmp9
(gelatinase B)
Length = 425
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 39/220 (17%)
Query: 52 LLDAEMGSNITGMSELKKYFTRFGYLSLSYTNFTDVFDTQLQSAVVSYQTKLGLPVTGKL 111
L ++ +N+T ++Y R+GY ++ L A++ Q +L LP TG+L
Sbjct: 11 LFPGDLRTNLTDRQLAEEYLYRYGYTRVAEMRGES---KSLGPALLLLQKQLSLPETGEL 67
Query: 112 DSETISTIMSPRCGVSDTSFRQKIHATKRYSYFYGKPRWVRESPMTLTYAFSKTDMIDYI 171
DS T+ + +PRCGV D R+ F G +W + +S+ D+ +
Sbjct: 68 DSATLKAMRTPRCGVPDLG---------RFQTFEGDLKWHHHNITYWIQNYSE-DLPRAV 117
Query: 172 DLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF---------- 221
+ AF +F WS+V P+ FT +Y D ADI I F +HGDG PF
Sbjct: 118 ----IDDAFARAFALWSAVTPLTFTRVYSRD-ADIVIQFGVAEHGDGYPFDGKDGLLAHA 172
Query: 222 -----------HFDAAETWAVDMESVKSRVAVDLESVATH 250
HFD E W++ V + + A H
Sbjct: 173 FPPGPGIQGDAHFDDDELWSLGKGVVVPTRFGNADGAACH 212
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 222 HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVDL 281
+FD+ + W + S L VA HE GH LGL H+SV EA+MYP + T L
Sbjct: 359 NFDSDKKWGFCPDQGYS-----LFLVAAHEFGHALGLDHSSVPEALMYP-MYRFTEGPPL 412
Query: 282 KVDDVEGVQALYG 294
DDV G++ LYG
Sbjct: 413 HKDDVNGIRHLYG 425
>pdb|4GR8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470c
Length = 152
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 67/145 (46%), Gaps = 37/145 (25%)
Query: 175 DVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF------------- 221
DV A + +FQ WS+V P+ F++I + ADI + F G HGD F
Sbjct: 19 DVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHGDDHAFDGKGGILAHAFGP 77
Query: 222 --------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSLT 273
HFD E W +L A HEIGH LGL H+S +AVM+P+
Sbjct: 78 GSGIGGDAHFDEDEFWTT------HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY- 130
Query: 274 PRTRKVD-----LKVDDVEGVQALY 293
+ VD L DD+ G+Q+LY
Sbjct: 131 ---KYVDINTFRLSADDIRGIQSLY 152
>pdb|2POJ|A Chain A, Nmr Solution Structure Of The Inhibitor-Free State Of
Macrophage Metalloelastase (Mmp-12)
Length = 164
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 77/175 (44%), Gaps = 42/175 (24%)
Query: 146 GKPRWVRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSAD 205
G P W R+ +T DM + DV A + +FQ WS+V P+ F++I + AD
Sbjct: 6 GGPVW-RKHYITYRINNYTPDM----NREDVDYAIRKAFQVWSNVTPLKFSKI-NTGMAD 59
Query: 206 IHIGFYHGDHGDGQPF---------------------HFDAAETWAVDMESVKSRVAVDL 244
I + F G HGD F HFD E W +L
Sbjct: 60 ILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNL 113
Query: 245 ESVATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKVD-----LKVDDVEGVQALYG 294
A H IGH LGL H+S +AVM+P+ + VD L DD+ G+Q+LYG
Sbjct: 114 FLTAVHAIGHSLGLGHSSDPKAVMFPTY----KYVDINTFRLSADDIRGIQSLYG 164
>pdb|1JK3|A Chain A, Crystal Structure Of Human Mmp-12 (Macrophage Elastase) At
True Atomic Resolution
Length = 158
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 69/150 (46%), Gaps = 37/150 (24%)
Query: 171 IDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF--------- 221
++ DV A + +FQ WS+V P+ F++I + ADI + F G HGD F
Sbjct: 20 MNREDVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHGDFHAFDGKGGILAH 78
Query: 222 ------------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMY 269
HFD E W +L A H IGH LGL H+S +AVM+
Sbjct: 79 AFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFLTAVHAIGHSLGLGHSSDPKAVMF 132
Query: 270 PSLTPRTRKVD-----LKVDDVEGVQALYG 294
P+ + VD L DD+ G+Q+LYG
Sbjct: 133 PTY----KYVDINTFRLSADDIRGIQSLYG 158
>pdb|2W0D|A Chain A, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|B Chain B, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|C Chain C, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|D Chain D, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|3UVC|A Chain A, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
pdb|3UVC|B Chain B, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
Length = 164
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 70/152 (46%), Gaps = 37/152 (24%)
Query: 171 IDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPF--------- 221
++ DV A + +FQ WS+V P+ F++I + ADI + F G HGD F
Sbjct: 21 MNREDVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHGDFHAFDGKGGILAH 79
Query: 222 ------------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMY 269
HFD E W +L A H IGH LGL H+S +AVM+
Sbjct: 80 AFGPGSGIGGDAHFDEDEFWTT------HSGGTNLFLTAVHAIGHSLGLGHSSDPKAVMF 133
Query: 270 PSLTPRTRKVD-----LKVDDVEGVQALYGSN 296
P+ + VD L DD+ G+Q+LYG +
Sbjct: 134 PTY----KYVDINTFRLSADDIRGIQSLYGHH 161
>pdb|1RM8|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-16MT3-
Mmp: Characterization Of Mt-Mmp Specific Features
Length = 169
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 31/148 (20%)
Query: 175 DVKAAFKSSFQRWSSVIPVNFTEI------YDYDSADIHIGFYHGDHGDGQPF------- 221
+ + A + +F W +V P+ F E+ DI I F G HGD PF
Sbjct: 24 ETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEGGFL 83
Query: 222 --------------HFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAV 267
HFD+ E W + + DL VA HE+GH LGL H++ A+
Sbjct: 84 AHAYFPGPGIGGDTHFDSDEPWTL---GNPNHDGNDLFLVAVHELGHALGLEHSNDPTAI 140
Query: 268 MYPSLT-PRTRKVDLKVDDVEGVQALYG 294
M P T L DD++G+Q +YG
Sbjct: 141 MAPFYQYMETDNFKLPNDDLQGIQKIYG 168
>pdb|1SAT|A Chain A, Crystal Structure Of The 50 Kda Metallo Protease From S.
Marcescens
Length = 471
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 75/203 (36%), Gaps = 61/203 (30%)
Query: 151 VRESPMTLT-----YAFSKTDMIDYIDLTDVKA----AFKSSFQRWSSVIPVNFTEIYDY 201
V P+ LT Y FS T++ L+ A K S Q W+ V + FTE+
Sbjct: 51 VFGQPVKLTFSFPDYKFSSTNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAG 110
Query: 202 DSADIHIGFYHGDHGDGQPFHFD-------------------AAETW-AVDMESVKSRVA 241
A+I G Y D +P H+D +TW V+ +VK
Sbjct: 111 QKANITFGNYSQD----RPGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPAT 166
Query: 242 VDL-ESVATHEIGHVLGLAHTSVKEAV----MYPSLT--PRTRKVDLK------------ 282
D THEIGH LGL+H A Y +T TR+ L
Sbjct: 167 EDYGRQTFTHEIGHALGLSHPGDYNAGEGDPTYADVTYAEDTRQFSLMSYWSETNTGGDN 226
Query: 283 ---------VDDVEGVQALYGSN 296
+DD+ +Q LYG+N
Sbjct: 227 GGHYAAAPLLDDIAAIQHLYGAN 249
>pdb|1SMP|A Chain A, Crystal Structure Of A Complex Between Serratia Marcescens
Metallo-Protease And An Inhibitor From Erwinia
Chrysanthemi
Length = 471
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 75/203 (36%), Gaps = 61/203 (30%)
Query: 151 VRESPMTLT-----YAFSKTDMIDYIDLTDVKA----AFKSSFQRWSSVIPVNFTEIYDY 201
V P+ LT Y FS T++ L+ A K S Q W+ V + FTE+
Sbjct: 51 VFGQPVKLTFSFPDYKFSSTNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAG 110
Query: 202 DSADIHIGFYHGDHGDGQPFHFD-------------------AAETW-AVDMESVKSRVA 241
A+I G Y D +P H+D +TW V+ +VK
Sbjct: 111 QKANITFGNYSQD----RPGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPAT 166
Query: 242 VDL-ESVATHEIGHVLGLAHTSVKEAV----MYPSLT--PRTRKVDLK------------ 282
D THEIGH LGL+H A Y +T TR+ L
Sbjct: 167 EDYGRQTFTHEIGHALGLSHPGDYNAGEGNPTYNDVTYAEDTRQFSLMSYWSETNTGGDN 226
Query: 283 ---------VDDVEGVQALYGSN 296
+DD+ +Q LYG+N
Sbjct: 227 GGHYAAAPLLDDIAAIQHLYGAN 249
>pdb|1AF0|A Chain A, Serratia Protease In Complex With Inhibitor
Length = 471
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 75/203 (36%), Gaps = 61/203 (30%)
Query: 151 VRESPMTLT-----YAFSKTDMIDYIDLTDVKA----AFKSSFQRWSSVIPVNFTEIYDY 201
V P+ LT Y FS T++ L+ A K S Q W+ V + FTE+
Sbjct: 51 VFGQPVKLTFSFPDYKFSSTNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAG 110
Query: 202 DSADIHIGFYHGDHGDGQPFHFD-------------------AAETW-AVDMESVKSRVA 241
A+I G Y D +P H+D +TW V+ +VK
Sbjct: 111 QKANITFGNYSQD----RPGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPAT 166
Query: 242 VDL-ESVATHEIGHVLGLAHTSVKEAV----MYPSLT--PRTRKVDLK------------ 282
D THEIGH LGL+H A Y +T TR+ L
Sbjct: 167 EDYGRQTFTHEIGHALGLSHPGDYNAGEGDPTYNDVTYAEDTRQFSLMSYWSETNTGGDN 226
Query: 283 ---------VDDVEGVQALYGSN 296
+DD+ +Q LYG+N
Sbjct: 227 GGHYAAAPLLDDIAAIQHLYGAN 249
>pdb|1SRP|A Chain A, Structural Analysis Of Serratia Protease
Length = 471
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 74/199 (37%), Gaps = 61/199 (30%)
Query: 155 PMTLT-----YAFSKTDMIDYIDLTDVKA----AFKSSFQRWSSVIPVNFTEIYDYDSAD 205
P+ LT Y FS T++ L+ A K S Q W+ V + FTE+ A+
Sbjct: 55 PVKLTFSFPDYKFSSTNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKAN 114
Query: 206 IHIGFYHGDHGDGQPFHFD-------------------AAETW-AVDMESVKSRVAVDL- 244
I G Y D +P H+D +TW V+ +VK D
Sbjct: 115 ITFGNYSQD----RPGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYG 170
Query: 245 ESVATHEIGHVLGLAHTSVKEAV----MYPSLT--PRTRKVDLK---------------- 282
THEIGH LGL+H A Y +T TR+ L
Sbjct: 171 RQTFTHEIGHALGLSHPGDYNAGEGNPTYRDVTYAEDTRQFSLMSYWSETNTGGDNGGHY 230
Query: 283 -----VDDVEGVQALYGSN 296
+DD+ +Q LYG+N
Sbjct: 231 AAAPLLDDIAAIQHLYGAN 249
>pdb|1KAP|P Chain P, Three-Dimensional Structure Of The Alkaline Protease Of
Pseudomonas Aeruginosa: A Two-Domain Protein With A
Calcium Binding Parallel Beta Roll Motif
Length = 479
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 39/154 (25%)
Query: 181 KSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPFHF-----DA--AETWAVDM 233
K S Q WS V ++F + D D+ G + G G F F DA ++W +
Sbjct: 106 KLSLQSWSDVTNIHFVDAGQGDQGDLTFGNFSSSVG-GAAFAFLPDVPDALKGQSWYLIN 164
Query: 234 ESVKSRVAVDLESVA----THEIGHVLGLAH----------------TSVKEAVMYPSLT 273
S + V + THEIGH LGL+H T ++ Y ++
Sbjct: 165 SSYSANVNPANGNYGRQTLTHEIGHTLGLSHPGDYNAGEGDPTYADATYAEDTRAYSVMS 224
Query: 274 ---PRTRKVDLK--------VDDVEGVQALYGSN 296
+ D K +DD+ +Q LYG+N
Sbjct: 225 YWEEQNTGQDFKGAYSSAPLLDDIAAIQKLYGAN 258
>pdb|1JIW|P Chain P, Crystal Structure Of The Apr-Aprin Complex
pdb|1AKL|A Chain A, Alkaline Protease From Pseudomonas Aeruginosa Ifo3080
pdb|3VI1|A Chain A, Crystal Structure Of Pseudomonas Aerginosa Alkaline
Protease Complexed With Substance P(1-6)
pdb|3VI1|B Chain B, Crystal Structure Of Pseudomonas Aerginosa Alkaline
Protease Complexed With Substance P(1-6)
Length = 470
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 39/154 (25%)
Query: 181 KSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQPFHF-----DA--AETWAVDM 233
K S Q WS V ++F + D D+ G + G G F F DA ++W +
Sbjct: 97 KLSLQSWSDVTNIHFVDAGQGDQGDLTFGNFSSSVG-GAAFAFLPDVPDALKGQSWYLIN 155
Query: 234 ESVKSRVAVDLESVA----THEIGHVLGLAH----------------TSVKEAVMYPSLT 273
S + V + THEIGH LGL+H T ++ Y ++
Sbjct: 156 SSYSANVNPANGNYGRQTLTHEIGHTLGLSHPGDYNAGEGDPTYADATYAEDTRAYSVMS 215
Query: 274 ---PRTRKVDLK--------VDDVEGVQALYGSN 296
+ D K +DD+ +Q LYG+N
Sbjct: 216 YWEEQNTGQDFKGAYSSAPLLDDIAAIQKLYGAN 249
>pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l Mutant
Length = 462
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 181 KSSFQRWSSVIPVNFTEIYDYDSADIHIGFY------HGDHGDGQPFHF------DAAET 228
K S Q WS V + FTE+ SA+I G Y + D+G Q + + A +
Sbjct: 89 KLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDYGT-QAYAYYPGNYQGAGSS 147
Query: 229 W-AVDMESVKSRVAVDL-ESVATHEIGHVLGLAH 260
W + ++++ + + THEIGH LGLAH
Sbjct: 148 WYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAH 181
>pdb|3HBV|P Chain P, Prtc Methionine Mutants: M226a In-House
pdb|3HDA|P Chain P, Prtc Methionine Mutants: M226a_desy
Length = 462
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 181 KSSFQRWSSVIPVNFTEIYDYDSADIHIGFY------HGDHGDGQPFHF------DAAET 228
K S Q WS V + FTE+ SA+I G Y + D+G Q + + A +
Sbjct: 89 KLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDYGT-QAYAYYPGNYQGAGSS 147
Query: 229 W-AVDMESVKSRVAVDL-ESVATHEIGHVLGLAH 260
W + ++++ + + THEIGH LGLAH
Sbjct: 148 WYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAH 181
>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
Length = 479
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 181 KSSFQRWSSVIPVNFTEIYDYDSADIHIGFY------HGDHGDGQPFHF------DAAET 228
K S Q WS V + FTE+ SA+I G Y + D+G Q + + A +
Sbjct: 106 KLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDYGT-QAYAYYPGNYQGAGSS 164
Query: 229 W-AVDMESVKSRVAVDL-ESVATHEIGHVLGLAH 260
W + ++++ + + THEIGH LGLAH
Sbjct: 165 WYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAH 198
>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
Length = 479
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 181 KSSFQRWSSVIPVNFTEIYDYDSADIHIGFY------HGDHGDGQPFHF------DAAET 228
K S Q WS V + FTE+ SA+I G Y + D+G Q + + A +
Sbjct: 106 KLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDYGT-QAYAYYPGNYQGAGSS 164
Query: 229 W-AVDMESVKSRVAVDL-ESVATHEIGHVLGLAH 260
W + ++++ + + THEIGH LGLAH
Sbjct: 165 WYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAH 198
>pdb|3HBU|P Chain P, Prtc Methionine Mutants: M226h Desy
Length = 462
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 181 KSSFQRWSSVIPVNFTEIYDYDSADIHIGFY------HGDHGDGQPFHF------DAAET 228
K S Q WS V + FTE+ SA+I G Y + D+G Q + + A +
Sbjct: 89 KLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDYGT-QAYAYYPGNYQGAGSS 147
Query: 229 W-AVDMESVKSRVAVDL-ESVATHEIGHVLGLAH 260
W + ++++ + + THEIGH LGLAH
Sbjct: 148 WYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAH 181
>pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-E189k Double Mutant
Length = 462
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 181 KSSFQRWSSVIPVNFTEIYDYDSADIHIGFY------HGDHGDGQPFHF------DAAET 228
K S Q WS V + FTE+ SA+I G Y + D+G Q + + A +
Sbjct: 89 KLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDYGT-QAYAYYPGNYQGAGSS 147
Query: 229 W-AVDMESVKSRVAVDL-ESVATHEIGHVLGLAH 260
W + ++++ + + TH+IGH LGLAH
Sbjct: 148 WYNYNQSNIRNPGSEEYGRQTFTHKIGHALGLAH 181
>pdb|3HB2|P Chain P, Prtc Methionine Mutants: M226i
Length = 462
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 15/94 (15%)
Query: 181 KSSFQRWSSVIPVNFTEIYDYDSADIHIGFY------HGDHGDGQPFHF------DAAET 228
K S Q WS V + FTE+ SA+I G Y + D+G Q + + A +
Sbjct: 89 KLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDYGT-QAYAYYPGNYQGAGSS 147
Query: 229 W-AVDMESVKSRVAVDL-ESVATHEIGHVLGLAH 260
W + ++++ + + TH IGH LGLAH
Sbjct: 148 WYNYNQSNIRNPGSEEYGRQTFTHAIGHALGLAH 181
>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
Length = 479
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 15/94 (15%)
Query: 181 KSSFQRWSSVIPVNFTEIYDYDSADIHIGFY------HGDHGDGQPFHF------DAAET 228
K S Q WS V + FTE+ SA+I G Y + D+G Q + + A +
Sbjct: 106 KLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDYGT-QAYAYYPGNYQGAGSS 164
Query: 229 W-AVDMESVKSRVAVDL-ESVATHEIGHVLGLAH 260
W + ++++ + + TH IGH LGLAH
Sbjct: 165 WYNYNQSNIRNPGSEEYGRQTFTHAIGHALGLAH 198
>pdb|1S7Q|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7R|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7R|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7S|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7T|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7T|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
Length = 348
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 257
>pdb|1T0N|A Chain A, Conformational Switch In Polymorphic H-2k Molecules
Containing An Hsv Peptide
pdb|1T0N|D Chain D, Conformational Switch In Polymorphic H-2k Molecules
Containing An Hsv Peptide
Length = 278
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 257
>pdb|2CLV|A Chain A, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Pbm8 Peptide
pdb|2CLV|H Chain H, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Pbm8 Peptide
pdb|2CLZ|A Chain A, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Pbm1 Peptide
pdb|2CLZ|H Chain H, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Pbm1 Peptide
pdb|2OL3|H Chain H, Crystal Structure Of Bm3.3 Scfv Tcr In Complex With
Pbm8-h-2kbm8 Mhc Class I Molecule
Length = 279
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 257
>pdb|2MHA|A Chain A, Crystal Structure Of The Major Histocompatibility Complex
Class I H-2kb Molecule Containing A Single Viral
Peptide: Implications For Peptide Binding And T-Cell
Receptor Recognition
pdb|2MHA|C Chain C, Crystal Structure Of The Major Histocompatibility Complex
Class I H-2kb Molecule Containing A Single Viral
Peptide: Implications For Peptide Binding And T-Cell
Receptor Recognition
Length = 270
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 257
>pdb|4HKJ|A Chain A, Structure Of Cowpox Cpxv203 In Complex With Mhci (H-2kb)
pdb|4HKJ|E Chain E, Structure Of Cowpox Cpxv203 In Complex With Mhci (H-2kb)
pdb|4HKJ|I Chain I, Structure Of Cowpox Cpxv203 In Complex With Mhci (H-2kb)
pdb|4HKJ|M Chain M, Structure Of Cowpox Cpxv203 In Complex With Mhci (H-2kb)
Length = 280
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 257
>pdb|1KJ3|H Chain H, Mhc Class I H-2kb Molecule Complexed With Pkb1 Peptide
pdb|1KJ3|I Chain I, Mhc Class I H-2kb Molecule Complexed With Pkb1 Peptide
pdb|3PAB|A Chain A, Crystal Structure Of H2-Kb In Complex With A Mutant Of The
Chicken Ovalbumin Epitope Ova-E1
pdb|3PAB|D Chain D, Crystal Structure Of H2-Kb In Complex With A Mutant Of The
Chicken Ovalbumin Epitope Ova-E1
Length = 279
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 214 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 258
>pdb|1NAN|H Chain H, Mch Class I H-2kb Molecule Complexed With Pbm1 Peptide
pdb|1NAN|L Chain L, Mch Class I H-2kb Molecule Complexed With Pbm1 Peptide
pdb|1T0M|A Chain A, Conformational Switch In Polymorphic H-2k Molecules
Containing An Hsv Peptide
pdb|1T0M|D Chain D, Conformational Switch In Polymorphic H-2k Molecules
Containing An Hsv Peptide
pdb|2ZSV|C Chain C, Crystal Structure Of H-2kb In Complex With Jhmv Epitope
S598
pdb|2ZSW|A Chain A, Crystal Structure Of H-2kb In Complex With The Q600y
Variant Of Jhmv Epitope S598
pdb|2ZSW|E Chain E, Crystal Structure Of H-2kb In Complex With The Q600y
Variant Of Jhmv Epitope S598
pdb|2ZSW|C Chain C, Crystal Structure Of H-2kb In Complex With The Q600y
Variant Of Jhmv Epitope S598
pdb|2ZSW|G Chain G, Crystal Structure Of H-2kb In Complex With The Q600y
Variant Of Jhmv Epitope S598
pdb|3P9L|A Chain A, Crystal Structure Of H2-Kb In Complex With The Chicken
Ovalbumin Epitope Ova
pdb|3P9L|D Chain D, Crystal Structure Of H2-Kb In Complex With The Chicken
Ovalbumin Epitope Ova
pdb|2ZSV|A Chain A, Crystal Structure Of H-2kb In Complex With Jhmv Epitope
S598
Length = 278
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 257
>pdb|1RJY|A Chain A, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Herpes Simplex Virus
Glycoprotein B Peptide
pdb|1RJY|D Chain D, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Herpes Simplex Virus
Glycoprotein B Peptide
pdb|1RJZ|A Chain A, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Herpies Simplex Virus
Mutant Glycoprotein B Peptide
pdb|1RJZ|D Chain D, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Herpies Simplex Virus
Mutant Glycoprotein B Peptide
Length = 280
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 257
>pdb|3P4M|A Chain A, Crystal Structure Of H2-Kb In Complex With The Np205-Lcmv
Epitope Ytvkypnl, An 8-Mer Peptide From The Lcmv
pdb|3P4M|D Chain D, Crystal Structure Of H2-Kb In Complex With The Np205-Lcmv
Epitope Ytvkypnl, An 8-Mer Peptide From The Lcmv
pdb|3P4N|A Chain A, Crystal Structure Of H2-Kb In Complex With The Np205-Pv
Epitope Ytvkfpnm, An 8-Mer Peptide From Pv
pdb|3P4N|D Chain D, Crystal Structure Of H2-Kb In Complex With The Np205-Pv
Epitope Ytvkfpnm, An 8-Mer Peptide From Pv
pdb|3P4O|A Chain A, Crystal Structure Of H2-Kb In Complex With The Mutant
Np205-Lcmv-V3a Epitope Ytakypnl, An 8-Mer Modified
Peptide From The Lcmv
pdb|3P4O|D Chain D, Crystal Structure Of H2-Kb In Complex With The Mutant
Np205-Lcmv-V3a Epitope Ytakypnl, An 8-Mer Modified
Peptide From The Lcmv
Length = 278
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 214 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 258
>pdb|1MWA|H Chain H, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
pdb|1MWA|I Chain I, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
Length = 275
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 257
>pdb|1KJ2|H Chain H, Murine Alloreactive Scfv Tcr-peptide-mhc Class I Molecule
Complex
pdb|1KJ2|I Chain I, Murine Alloreactive Scfv Tcr-peptide-mhc Class I Molecule
Complex
pdb|3P9M|A Chain A, Crystal Structure Of H2-Kb In Complex With A Mutant Of The
Chicken Ovalbumin Epitope Ova-G4
pdb|3P9M|D Chain D, Crystal Structure Of H2-Kb In Complex With A Mutant Of The
Chicken Ovalbumin Epitope Ova-G4
Length = 277
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 257
>pdb|1NAM|H Chain H, Murine Alloreactive Scfv Tcr-Peptide-Mhc Class I Molecule
Complex
pdb|1WBZ|A Chain A, Crystal Structures Of Murine Mhc Class I H-2 Db And Kb
Molecules In Complex With Ctl Epitopes From Influenza A
Virus: Implications For Tcr Repertoire Selection And
Immunodominance
pdb|1WBZ|C Chain C, Crystal Structures Of Murine Mhc Class I H-2 Db And Kb
Molecules In Complex With Ctl Epitopes From Influenza A
Virus: Implications For Tcr Repertoire Selection And
Immunodominance
pdb|3ROL|A Chain A, Murine Class I Major Histocompatibility Complex H-2kb In
Complex With Post-Translationally Modified Lcmv-Derived
Gp34-41 Peptide, Comprising A Nitrotyrosine At Position
3
pdb|3ROL|C Chain C, Murine Class I Major Histocompatibility Complex H-2kb In
Complex With Post-Translationally Modified Lcmv-Derived
Gp34-41 Peptide, Comprising A Nitrotyrosine At Position
3
pdb|3ROO|A Chain A, Murine Class I Major Histocompatibility Complex H-2kb In
Complex With Immunodominant Lcmv-Derived Gp34-41 Peptide
pdb|3ROO|C Chain C, Murine Class I Major Histocompatibility Complex H-2kb In
Complex With Immunodominant Lcmv-Derived Gp34-41 Peptide
Length = 275
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 257
>pdb|1N59|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2kb, B2-microglobulin,
And A 9-residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1N59|C Chain C, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2kb, B2-microglobulin,
And A 9-residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
Length = 276
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 257
>pdb|3TID|A Chain A, Crystal Structure Of The Lcmv Derived Peptide Gp34 In
Complex With The Murine Mhc Class I H-2 Kb
pdb|3TIE|A Chain A, Crystal Structure Of The Vaccinia Derived Peptide A11r In
Complex With The Murine Mhc Class I H-2 Kb
pdb|3TIE|D Chain D, Crystal Structure Of The Vaccinia Derived Peptide A11r In
Complex With The Murine Mhc Class I H-2 Kb
Length = 284
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 220 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 264
>pdb|3RGV|C Chain C, A Single Tcr Bound To Mhci And Mhc Ii Reveals Switchable
Tcr Conformers
Length = 275
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 257
>pdb|1LEK|A Chain A, Crystal Structure Of H-2kbm3 Bound To Dev8
Length = 274
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 257
>pdb|2VAB|A Chain A, Mhc Class I H-2kb Heavy Chain Complexed With Beta-2
Microglobulin And Sendai Virus Nucleoprotein
pdb|2VAA|A Chain A, Mhc Class I H-2kb Heavy Chain Complexed With Beta-2
Microglobulin And Vesicular Stomatitis Virus
Nucleoprotein
pdb|1VAD|A Chain A, Mhc Class I H-2kb Heavy Chain Complexed With Beta-2
Microglobulin And Yeast Alpha-Glucosidase
pdb|1VAC|A Chain A, Mhc Class I H-2kb Heavy Chain Complexed With Beta-2
Microglobulin And Chicken Ovalbumin
pdb|2CKB|H Chain H, Structure Of The 2cKBDEV8 COMPLEX
pdb|2CKB|I Chain I, Structure Of The 2cKBDEV8 COMPLEX
pdb|1BQH|A Chain A, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1BQH|D Chain D, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1OSZ|A Chain A, Mhc Class I H-2kb Heavy Chain Complexed With Beta-2
Microglobulin And An (L4v) Mutant Of The Vesicular
Stomatitis Virus Nucleoprotein
pdb|1KBG|H Chain H, Mhc Class I H-2kb Presented Glycopeptide Rgy8-6h-Gal2
pdb|1G6R|H Chain H, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1G6R|I Chain I, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1G7P|A Chain A, Crystal Structure Of Mhc Class I H-2kb Heavy Chain
Complexed With Beta-2 Microglobulin And Yeast
Alpha-Glucosidase
pdb|1G7Q|A Chain A, Crystal Structure Of Mhc Class I H-2kb Heavy Chain
Complexed With Beta-2 Microglobulin And Muc1 Vntr
Peptide Sapdtrpa
pdb|1KPU|A Chain A, High Resolution Crystal Structure Of The Mhc Class I
Complex H- 2kbVSV8
pdb|1KPV|A Chain A, High Resolution Crystal Structure Of The Mhc Class I
Complex H- 2kbSEV9
pdb|1LK2|A Chain A, 1.35a Crystal Structure Of H-2kb Complexed With The
Gnysfyal Peptide
pdb|1P1Z|A Chain A, X-Ray Crystal Structure Of The Lectin-Like Natural Killer
Cell Receptor Ly-49c Bound To Its Mhc Class I Ligand
H-2kb
pdb|1P4L|A Chain A, Crystal Structure Of Nk Receptor Ly49c Mutant With Its Mhc
Class I Ligand H-2kb
pdb|1RK0|A Chain A, Mhc Class I H-2kb Heavy Chain Complexed With Beta-2
Microglobulin And Herpes Simplex Virus Glycoprotein B
Peptide
pdb|1RK1|A Chain A, Mhc Class I Natural H-2kb Heavy Chain Complexed With
Beta-2 Microglobulin And Herpes Simplex Virus Mutant
Glycoprotein B Peptide
pdb|2FO4|A Chain A, Enhanced Mhc Class I Binding And Immune Responses Through
Anchor Modification Of The Non-Canonical Tumor
Associated Muc1-8 Peptide
pdb|3C8K|A Chain A, The Crystal Structure Of Ly49c Bound To H-2kb
pdb|3CVH|A Chain A, How Tcr-Like Antibody Recognizes Mhc-Bound Peptide
pdb|3CVH|M Chain M, How Tcr-Like Antibody Recognizes Mhc-Bound Peptide
Length = 274
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 257
>pdb|1FO0|H Chain H, Murine Alloreactive Scfv Tcr-Peptide-Mhc Class I Molecule
Complex
Length = 276
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 214 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 258
>pdb|1LEG|A Chain A, Crystal Structure Of H-2kb Bound To The Dev8 Peptide
Length = 274
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 257
>pdb|1FZM|A Chain A, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Vesicular Stomatitis Virus
Nucleoprotein
pdb|1FZO|A Chain A, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Sendai Virus Nucleoprotein
Length = 274
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 257
>pdb|1FZJ|A Chain A, Mhc Class I Natural Mutant H-2kbm1 Heavy Chain Complexed
With Beta-2 Microglobulin And Vesicular Stomatitis Virus
Nucleoprotein
pdb|1FZK|A Chain A, Mhc Class I Natural Mutant H-2kbm1 Heavy Chain Complexed
With Beta-2 Microglobulin And Sendai Virus Nucleoprotein
Length = 274
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 257
>pdb|2CII|A Chain A, The Crystal Structure Of H-2db Complexed With A Partial
Peptide Epitope Suggests An Mhc Class I Assembly-
Intermediate
Length = 275
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210
+TLT+A + ++ ++L + + A +FQ+W+SV+ V + +Y H G
Sbjct: 213 ITLTWALNGEELTQDMELVETRPAGDGTFQKWASVV-VPLGKEQNYTCRVYHEGL 266
>pdb|2QRT|A Chain A, Crystal Structure Of A Disulfide Trapped Single Chain
Trimer Composed Of The Mhc I Heavy Chain H-2kb Y84c,
Beta- 2microglobulin, And Ovalbumin-Derived Peptide.
pdb|2QRT|B Chain B, Crystal Structure Of A Disulfide Trapped Single Chain
Trimer Composed Of The Mhc I Heavy Chain H-2kb Y84c,
Beta- 2microglobulin, And Ovalbumin-Derived Peptide
Length = 422
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 355 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 399
>pdb|2QRS|A Chain A, Crystal Structure Of A Single Chain Trimer Composed Of The
Mhc I Heavy Chain H-2kb Y84a, Beta-2microglobulin, And
Ovalbumin-Derived Peptide.
pdb|2QRS|B Chain B, Crystal Structure Of A Single Chain Trimer Composed Of The
Mhc I Heavy Chain H-2kb Y84a, Beta-2microglobulin, And
Ovalbumin-Derived Peptide
Length = 422
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 355 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 399
>pdb|2QRI|A Chain A, Crystal Structure Of A Single Chain Trimer Composed Of The
Mhc I Heavy Chain H-2kb Wt, Beta-2microglobulin, And
Ovalbumin-Derived Peptide.
pdb|2QRI|B Chain B, Crystal Structure Of A Single Chain Trimer Composed Of The
Mhc I Heavy Chain H-2kb Wt, Beta-2microglobulin, And
Ovalbumin-Derived Peptide
Length = 422
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++I ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 355 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 399
>pdb|3U1R|A Chain A, Structure Analysis Of A New Psychrophilic Marine Protease
Length = 480
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 61/162 (37%), Gaps = 43/162 (26%)
Query: 177 KAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQ------PFHFDAAETWA 230
K K S + W+ V V FTE D H+ F + +G P E+W
Sbjct: 103 KEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFANFSASNGGAAFAYLPNSSRKGESWY 162
Query: 231 V-----DMESVKSRVAVDLESVATHEIGHVLGLAH----------TSVKEAV------MY 269
+ D+ +++ THEIGH LGL+H S ++AV Y
Sbjct: 163 LINKDYDVNKTPGEGNYGRQTL-THEIGHTLGLSHPGDYNAGNGNPSYRDAVYGEDTRAY 221
Query: 270 PSLTPRTRKVDLKV---------------DDVEGVQALYGSN 296
++ + K +V DD+ VQ LYG+N
Sbjct: 222 SVMSYWSEKNTGQVFTKTGEGAYASAPLLDDIAAVQKLYGAN 263
>pdb|1KJV|A Chain A, Tap-B-Associated Rat Mhc Class I Molecule
Length = 284
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVI 191
+TLT+ + D+ ++L + + A +FQ+W+SV+
Sbjct: 213 ITLTWQLNGEDLTQDMELVETRPAGDGTFQKWASVV 248
>pdb|1KJM|A Chain A, Tap-A-Associated Rat Mhc Class I Molecule
Length = 285
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVI 191
+TLT+ + D+ ++L + + A +FQ+W+SV+
Sbjct: 213 ITLTWQLNGEDLTQDMELVETRPAGDGTFQKWASVV 248
>pdb|1ED3|A Chain A, Crystal Structure Of Rat Minor Histocompatibility Antigen
Complex Rt1-AaMTF-E.
pdb|1ED3|D Chain D, Crystal Structure Of Rat Minor Histocompatibility Antigen
Complex Rt1-AaMTF-E
Length = 275
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVI 191
+TLT+ + D+ ++L + + A +FQ+W+SV+
Sbjct: 213 ITLTWQLNGEDLTQDMELVETRPAGDGTFQKWASVV 248
>pdb|3ZVS|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
pdb|3ZVS|C Chain C, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
pdb|4A3W|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 2.16 A Resolution Complexed
With Citrate
Length = 160
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 232 DMESVKSRVAVDLESVATHEIGHVLGLAHTS 262
D E + RV + A HEIGHVLGL H S
Sbjct: 103 DSELYRERVVKE----AVHEIGHVLGLKHCS 129
>pdb|3ZVS|B Chain B, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
Length = 160
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 232 DMESVKSRVAVDLESVATHEIGHVLGLAHTS 262
D E + RV + A HEIGHVLGL H S
Sbjct: 103 DSELYRERVVKE----AVHEIGHVLGLKHCS 129
>pdb|4AXQ|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution
Length = 163
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 232 DMESVKSRVAVDLESVATHEIGHVLGLAHTS 262
D E + RV + A HEIGHVLGL H S
Sbjct: 106 DSELYRERVVKE----AVHEIGHVLGLKHCS 132
>pdb|1BII|A Chain A, The Crystal Structure Of H-2dd Mhc Class I In Complex With
The Hiv-1 Derived Peptide P18-110
Length = 365
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++ ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 237 ITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPLGKEQKY 281
>pdb|1DDH|A Chain A, Mhc Class I H-2dd Heavy Chain Complexed With Beta-2
Microglobulin And An Immunodominant Peptide P18-I10 From
The Human Immunodeficiency Virus Envelope Glycoprotein
120
Length = 274
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 154 SPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+ +TLT+ + ++ ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 211 AEITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPLGKQQKY 257
>pdb|1QO3|A Chain A, Complex Between Nk Cell Receptor Ly49a And Its Mhc Class I
Ligand H-2dd
pdb|3ECB|A Chain A, Crystal Structure Of Mouse H-2dd In Complex With Peptide
P18-I10 Derived From Human Immunodeficiency Virus
Envelope Glycoprotein 120
Length = 277
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++ ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPLGKEQKY 257
>pdb|3E6H|A Chain A, Mhc Class I H-2dd Heavy Chain Complexed With Beta-2
Microglobulin And A Variant Peptide, Pi10, From The
Human Immunodeficiency Virus (Bal) Envelope Glycoprotein
120
Length = 275
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++ ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELTQEMELVETRPARDGTFQKWASVVVPLGKEQKY 257
>pdb|3DMM|A Chain A, Crystal Structure Of The Cd8 Alpha BetaH-2dd Complex
Length = 275
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++ ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPLGKEQKY 257
>pdb|3E6F|A Chain A, Mhc Class I H-2dd Heavy Chain Complexed With Beta-2
Microglobulin And A Variant Peptide, Pa9, From The Human
Immunodeficiency Virus (Bal) Envelope Glycoprotein 120
Length = 274
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++ ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 213 ITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPLGKEQKY 257
>pdb|1N3N|A Chain A, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
pdb|1N3N|C Chain C, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
pdb|1N3N|E Chain E, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
pdb|1N3N|G Chain G, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
Length = 280
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210
+TLT+ + ++ ++L + + A +FQ+W+SV+ V + +Y H G
Sbjct: 213 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV-VPLGKEQNYTCRVYHEGL 266
>pdb|4HUX|A Chain A, Crystal Structure Of H2db-h155a-np
Length = 280
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210
+TLT+ + ++ ++L + + A +FQ+W+SV+ V + +Y H G
Sbjct: 213 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV-VPLGKEQNYTCRVYHEGL 266
>pdb|1FG2|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|D Chain D, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|G Chain G, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|J Chain J, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1JPF|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Gp276 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1JPG|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Np396 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|3FTG|A Chain A, Crystal Structure Of H2db In Complex With Np366-N3a
Variant Peptide From Influenza
pdb|4HUU|A Chain A, Crystal Structure Of H2db-npm6i
pdb|4HUU|D Chain D, Crystal Structure Of H2db-npm6i
pdb|4HUV|A Chain A, Crystal Structure Of H2db-npm6w
pdb|4HUV|D Chain D, Crystal Structure Of H2db-npm6w
pdb|4HUW|A Chain A, Crystal Structure Of H2db-npm6t
pdb|4HUW|C Chain C, Crystal Structure Of H2db-npm6t
pdb|4HUW|E Chain E, Crystal Structure Of H2db-npm6t
pdb|4HUW|G Chain G, Crystal Structure Of H2db-npm6t
Length = 281
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210
+TLT+ + ++ ++L + + A +FQ+W+SV+ V + +Y H G
Sbjct: 214 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV-VPLGKEQNYTCRVYHEGL 267
>pdb|4HV8|A Chain A, Crystal Structure Of H2db-h155a-npm6i
pdb|4HV8|C Chain C, Crystal Structure Of H2db-h155a-npm6i
Length = 281
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210
+TLT+ + ++ ++L + + A +FQ+W+SV+ V + +Y H G
Sbjct: 214 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV-VPLGKEQNYTCRVYHEGL 267
>pdb|2VE6|A Chain A, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
pdb|2VE6|D Chain D, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
pdb|2VE6|G Chain G, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
pdb|2VE6|J Chain J, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
Length = 277
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210
+TLT+ + ++ ++L + + A +FQ+W+SV+ V + +Y H G
Sbjct: 213 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV-VPLGKEQNYTCRVYHEGL 266
>pdb|1S7U|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7V|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7V|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|3QUK|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4a)
pdb|3QUK|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4a)
pdb|3QUL|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3TBS|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex The With
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p,Y4a)
pdb|3TBS|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex The With
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p,Y4a)
pdb|3TBT|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBV|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|C Chain C, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|E Chain E, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBW|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|C Chain C, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|E Chain E, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBX|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand V3p
pdb|3TBY|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
Length = 338
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210
+TLT+ + ++ ++L + + A +FQ+W+SV+ V + +Y H G
Sbjct: 213 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV-VPLGKEQNYTCRVYHEGL 266
>pdb|1QLF|A Chain A, Mhc Class I H-2db Complexed With Glycopeptide K3g
pdb|1N5A|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1N5A|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1N5A|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1N5A|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1WBX|A Chain A, Crystal Structures Of Murine Mhc Class I H-2 Db And Kb
Molecules In Complex With Ctl Epitopes From Influenza A
Virus: Implications For Tcr Repertoire Selection And
Immunodominance
pdb|1WBY|A Chain A, Crystal Structures Of Murine Mhc Class I H-2 Db And Kb
Molecules In Complex With Ctl Epitopes From Influenza A
Virus: Implications For Tcr Repertoire Selection And
Immunodominance
pdb|1ZHB|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|1ZHB|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|1ZHB|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|1ZHB|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|2F74|A Chain A, Murine Mhc Class I H-2db In Complex With Human
B2-Microglobulin And Lcmv-Derived Immunodminant Peptide
Gp33
pdb|2F74|D Chain D, Murine Mhc Class I H-2db In Complex With Human
B2-Microglobulin And Lcmv-Derived Immunodminant Peptide
Gp33
pdb|3CC5|A Chain A, H-2db Complex With Human Gp100
pdb|3CC5|D Chain D, H-2db Complex With Human Gp100
pdb|3CCH|A Chain A, H-2db Complex With Murine Gp100
pdb|3CCH|D Chain D, H-2db Complex With Murine Gp100
pdb|3CCH|G Chain G, H-2db Complex With Murine Gp100
pdb|3CCH|J Chain J, H-2db Complex With Murine Gp100
pdb|3CH1|A Chain A, Crystal Structure Of H-2db In Complex With Chimeric Gp100
pdb|3CH1|D Chain D, Crystal Structure Of H-2db In Complex With Chimeric Gp100
pdb|3CH1|G Chain G, Crystal Structure Of H-2db In Complex With Chimeric Gp100
pdb|3CH1|J Chain J, Crystal Structure Of H-2db In Complex With Chimeric Gp100
Length = 276
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210
+TLT+ + ++ ++L + + A +FQ+W+SV+ V + +Y H G
Sbjct: 213 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV-VPLGKEQNYTCRVYHEGL 266
>pdb|3BUY|A Chain A, Mhc-I In Complex With Peptide
pdb|3L3H|A Chain A, X-ray Crystal Structure Of The F6a Mutant Of Influenza A
Acid Polymerase Epitope Pa224 Bound To Murine H2-db Mhc
pdb|3PQY|A Chain A, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|F Chain F, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|K Chain K, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|P Chain P, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
Length = 275
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210
+TLT+ + ++ ++L + + A +FQ+W+SV+ V + +Y H G
Sbjct: 212 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV-VPLGKEQNYTCRVYHEGL 265
>pdb|1HOC|A Chain A, The Three-Dimensional Structure Of H-2db At 2.4 Angstroms
Resolution: Implications For Antigen-Determinant
Selection
Length = 272
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210
+TLT+ + ++ ++L + + A +FQ+W+SV+ V + +Y H G
Sbjct: 213 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV-VPLGKEQNYTCRVYHEGL 266
>pdb|1JUF|A Chain A, Structure Of Minor Histocompatibility Antigen Peptide,
H13b, Complexed To H2-Db
Length = 276
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210
+TLT+ + ++ ++L + + A +FQ+W+SV+ V + +Y H G
Sbjct: 213 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV-VPLGKEQNYTCRVYHEGL 266
>pdb|1INQ|A Chain A, Structure Of Minor Histocompatibility Antigen Peptide,
H13a, Complexed To H2-Db
pdb|3CPL|A Chain A, Crystal Structure Of H-2db In Complex With A Variant M6a
Of The Np366 Peptide From Influenza A Virus
pdb|3CPL|C Chain C, Crystal Structure Of H-2db In Complex With A Variant M6a
Of The Np366 Peptide From Influenza A Virus
Length = 275
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210
+TLT+ + ++ ++L + + A +FQ+W+SV+ V + +Y H G
Sbjct: 213 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV-VPLGKEQNYTCRVYHEGL 266
>pdb|1CE6|A Chain A, Mhc Class I H-2db Complexed With A Sendai Virus
Nucleoprotein Peptide
Length = 274
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210
+TLT+ + ++ ++L + + A +FQ+W+SV+ V + +Y H G
Sbjct: 213 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV-VPLGKEQNYTCRVYHEGL 266
>pdb|2ZOK|A Chain A, Crystal Structure Of H-2db In Complex With Jhmv Epitope
S510
pdb|2ZOK|C Chain C, Crystal Structure Of H-2db In Complex With Jhmv Epitope
S510
pdb|2ZOK|E Chain E, Crystal Structure Of H-2db In Complex With Jhmv Epitope
S510
pdb|2ZOK|G Chain G, Crystal Structure Of H-2db In Complex With Jhmv Epitope
S510
pdb|2ZOL|A Chain A, Crystal Structure Of H-2db In Complex With The W513s
Variant Of Jhmv Epitope S510
pdb|2ZOL|C Chain C, Crystal Structure Of H-2db In Complex With The W513s
Variant Of Jhmv Epitope S510
Length = 278
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210
+TLT+ + ++ ++L + + A +FQ+W+SV+ V + +Y H G
Sbjct: 213 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV-VPLGKEQNYTCRVYHEGL 266
>pdb|1FFN|A Chain A, Crystal Structure Of Murine Class I H-2db Complexed With
Peptide Gp33(C9m)
pdb|1FFN|D Chain D, Crystal Structure Of Murine Class I H-2db Complexed With
Peptide Gp33(C9m)
pdb|1FFO|A Chain A, Crystal Structure Of Murine Class I H-2db Complexed With
Synthetic Peptide Gp33 (C9mK1A)
pdb|1FFO|D Chain D, Crystal Structure Of Murine Class I H-2db Complexed With
Synthetic Peptide Gp33 (C9mK1A)
pdb|1FFP|A Chain A, Crystal Structure Of Murine Class I H-2db Complexed With
Peptide Gp33 (C9mK1S)
pdb|1FFP|D Chain D, Crystal Structure Of Murine Class I H-2db Complexed With
Peptide Gp33 (C9mK1S)
pdb|1YN6|A Chain A, Crystal Structure Of A Mouse Mhc Class I Protein, H2-Db,
In Complex With A Peptide From The Influenza A Acid
Polymerase
pdb|1YN7|A Chain A, Crystal Structure Of A Mouse Mhc Class I Protein, H2-Db,
In Complex With A Mutated Peptide (R7a) Of The Influenza
A Acid Polymerase
Length = 273
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210
+TLT+ + ++ ++L + + A +FQ+W+SV+ V + +Y H G
Sbjct: 212 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV-VPLGKEQNYTCRVYHEGL 265
>pdb|1BZ9|A Chain A, Crystal Structure Of Murine Class I Mhc H2-Db Complexed
With A Synthetic Peptide P1027
Length = 277
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210
+TLT+ + ++ ++L + + A +FQ+W+SV+ V + +Y H G
Sbjct: 212 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV-VPLGKEQNYTCRVYHEGL 265
>pdb|2FWO|A Chain A, Mhc Class I H-2kd Heavy Chain In Complex With Beta-
2microglobulin And Peptide Derived From Influenza
Nucleoprotein
Length = 283
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVI 191
+TLT+ + D+ ++L + + A +FQ+W++V+
Sbjct: 213 ITLTWQLNGEDLTQDMELVETRPAGDGTFQKWAAVV 248
>pdb|1LDP|H Chain H, Crystal Structure Of Murine Mhc Class I H-2ld With A
Mixture Of Bound Peptides
Length = 272
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVI 191
+TLT+ + ++ ++L + + A +FQ+W+SV+
Sbjct: 213 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV 248
>pdb|1LD9|A Chain A, The Three-Dimensional Structure Of An H-2ld Peptide
Complex Explains The Unique Interaction Of Ld With
Beta2m And Peptide
pdb|1LD9|D Chain D, The Three-Dimensional Structure Of An H-2ld Peptide
Complex Explains The Unique Interaction Of Ld With
Beta2m And Peptide
Length = 268
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVI 191
+TLT+ + ++ ++L + + A +FQ+W+SV+
Sbjct: 213 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV 248
>pdb|3FOL|A Chain A, Crystal Structure Of The Class I Mhc Molecule H-2kwm7 With
A Single Self Peptide Vndiferi
pdb|3FOM|A Chain A, Crystal Structure Of The Class I Mhc Molecule H-2kwm7 With
A Single Self Peptide Iqqsierl
pdb|3FON|A Chain A, Crystal Structure Of The Class I Mhc Molecule H-2kwm7 With
A Single Self Peptide Vndifeai
pdb|3FON|C Chain C, Crystal Structure Of The Class I Mhc Molecule H-2kwm7 With
A Single Self Peptide Vndifeai
Length = 274
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVI 191
+TLT+ + ++ ++L + + A +FQ+W+SV+
Sbjct: 213 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV 248
>pdb|1A7J|A Chain A, Phosphoribulokinase From Rhodobacter Spheroides
Length = 290
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 188 SSVIPVNFTEIYDYDSADIHIGFYHGDHG 216
+ V P NFT+ D+DS D H+ FY G HG
Sbjct: 108 TGVAPGNFTDWRDFDS-DSHLLFYEGLHG 135
>pdb|1ZT1|A Chain A, Crystal Structure Of Class I Mhc H-2kk In Complex With An
Octapeptide
Length = 277
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++ ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 214 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 258
>pdb|1VGK|A Chain A, The Crystal Structure Of Class I Major Histocompatibility
Complex, H-2kd At 2.0 A Resolution
Length = 274
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVI 191
+TLT+ + D+ ++L + + A +FQ+W++V+
Sbjct: 213 ITLTWQLNGEDLTQDMELVETRPAGDGTFQKWAAVV 248
>pdb|1K8D|A Chain A, Crystal Structure Of The Non-Classical Mhc Class Ib Qa-2
Complexed With A Self Peptide
Length = 274
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVI 191
+TLT+ + ++ ++L + + A +FQ+W+SV+
Sbjct: 213 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVV 248
>pdb|1ZT7|A Chain A, Crystal Structure Of Class I Mhc H-2kk In Complex With A
Nonapeptide
pdb|1ZT7|C Chain C, Crystal Structure Of Class I Mhc H-2kk In Complex With A
Nonapeptide
Length = 276
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSS-VIPVNFTEIY 199
+TLT+ + ++ ++L + + A +FQ+W+S V+P+ + Y
Sbjct: 214 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQYY 258
>pdb|1G9K|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
pdb|1O0Q|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 1 Mm Edta
pdb|1O0T|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5 Mm Edta (5
Days)
pdb|1OM6|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5mm Edta (2
Months)
pdb|1OM7|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Soaked In 85 Mm Edta
pdb|1OM8|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallyzed With 10 Mm Edta
pdb|1OMJ|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
Length = 463
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 177 KAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQ------PFHFDAAETWA 230
K K S + W+ V V FTE D H+ F + +G P E+W
Sbjct: 86 KEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFANFSASNGGAAFAYLPNSSRKGESWY 145
Query: 231 V---DMESVKSRVAVDL-ESVATHEIGHVLGLAH 260
+ D + K+ + THEIGH LGL+H
Sbjct: 146 LINKDYQVNKTPGEGNYGRQTLTHEIGHTLGLSH 179
>pdb|3NWM|A Chain A, Crystal Structure Of A Single Chain Construct Composed Of
Mhc Class I H-2kd, Beta-2microglobulin And A Peptide
Which Is An Autoantigen For Type 1 Diabetes
Length = 443
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVI 191
+TLT+ + D+ ++L + + A +FQ+W++V+
Sbjct: 358 ITLTWQLNGEDLTQDMELVETRPAGDGTFQKWAAVV 393
>pdb|1NEZ|A Chain A, The Crystal Structure Of A TlCD8AA COMPLEX AT 2.1A
Resolution:implications For Memory T Cell Generation,
Co-Receptor Preference And Affinity
Length = 274
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 156 MTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVI 191
+TLT+ + ++I +L + + A +FQ+W++V+
Sbjct: 213 ITLTWQLNGEELIQDTELVETRPAGDGTFQKWAAVV 248
>pdb|1H71|P Chain P, Psychrophilic Protease From Pseudoalteromonas 'tac Ii 18'
Length = 463
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 177 KAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGFYHGDHGDGQ------PFHFDAAETWA 230
K K S + W+ V V FTE D H F + +G P E+W
Sbjct: 86 KEQAKLSLESWADVAKVTFTEGPAARGDDGHQTFANFSASNGGAAFAYLPNSSRKGESWY 145
Query: 231 V---DMESVKSRVAVDL-ESVATHEIGHVLGLAH 260
+ D + K+ + THEIGH LGL+H
Sbjct: 146 LINKDYQVNKTPGEGNYGRQTLTHEIGHTLGLSH 179
>pdb|2X7M|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Methanopyrus Kandleri At 1.5 A Resolution
Length = 195
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 249 THEIGHVLGLAHTSVKEAVM 268
THE+GH GL H + VM
Sbjct: 144 THELGHTFGLGHCPDRNCVM 163
>pdb|3P24|A Chain A, Structure Of Profragilysin-3 From Bacteroides Fragilis
pdb|3P24|B Chain B, Structure Of Profragilysin-3 From Bacteroides Fragilis
pdb|3P24|C Chain C, Structure Of Profragilysin-3 From Bacteroides Fragilis
pdb|3P24|D Chain D, Structure Of Profragilysin-3 From Bacteroides Fragilis
Length = 397
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 247 VATHEIGHVLGLAHTSVKEAVMYPSLT 273
V HE+GH+LG H + +MY T
Sbjct: 345 VMAHELGHILGANHADDPKDLMYSKYT 371
>pdb|2WAD|A Chain A, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
pdb|2WAD|B Chain B, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
pdb|2WAD|C Chain C, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
Length = 680
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 193 VNFTEIYDYDSADIHIGFYHGDHG-----DGQPFHFDAAETWAVDMESVKSRVAVDLESV 247
+N I + D A +H GFY HG G+ F A + + + +S VA E+
Sbjct: 571 INKVNISESDMAILHQGFYQVSHGTSPLTTGRAFSDGATVSISGKTGTGESYVAGGQEAT 630
Query: 248 ATHEIGHVLGLAHTSVKEAVMYPSLTPRTRKV 279
T+ + + + + AV++P T T+ V
Sbjct: 631 NTNAVAYA-PTENPQIAVAVVFPHNTNLTKNV 661
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,490,198
Number of Sequences: 62578
Number of extensions: 385383
Number of successful extensions: 1465
Number of sequences better than 100.0: 166
Number of HSP's better than 100.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1052
Number of HSP's gapped (non-prelim): 187
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)