BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037542
         (129 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EBY|A Chain A, Crystal Structure Of The Ectodomain Of A Receptor Like
           Kinase
 pdb|4EBZ|A Chain A, Crystal Structure Of The Ectodomain Of A Receptor Like
           Kinase
          Length = 212

 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 3   DTFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPVFCKCPDQTQLRNRVNYLV 62
           DT+  V+ + Y NLTT +S++  NP F  T + +       V C C D++  ++     V
Sbjct: 87  DTYERVAISNYANLTTMESLQARNP-FPATNIPLSATLNVLVNCSCGDESVSKD-FGLFV 144

Query: 63  SYVLQPSENLSSVASRFGIETQAI 86
           +Y L+P ++LSS+A   G+    +
Sbjct: 145 TYPLRPEDSLSSIARSSGVSADIL 168


>pdb|1E0G|A Chain A, Lysm Domain From E.Coli Mltd
          Length = 48

 Score = 30.0 bits (66), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 4/45 (8%)

Query: 62  VSYVLQPSENLSSVASRFGIETQAIIDVNGN--NIRPFD--TLFV 102
           ++Y ++  ++LSS+A R G+  + ++  N +  N++P D  TLFV
Sbjct: 3   ITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFV 47


>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog
          From Methanopyrus Kandleri
          Length = 506

 Score = 26.2 bits (56), Expect = 5.8,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 68 PSENLSSVASRFGIETQAIIDV 89
          P   +  VASRFG+ T+ +I++
Sbjct: 15 PDARIGEVASRFGLPTRVLIEI 36


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,241,670
Number of Sequences: 62578
Number of extensions: 111633
Number of successful extensions: 283
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 3
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)