Query 037542
Match_columns 129
No_of_seqs 230 out of 1203
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 23:05:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eby_A Chitin elicitor recepto 99.9 2.1E-25 7.3E-30 163.3 13.3 105 1-108 85-192 (212)
2 4eby_A Chitin elicitor recepto 99.9 1.8E-25 6.3E-30 163.7 9.8 100 1-107 16-130 (212)
3 2l9y_A CVNH-LYSM lectin; carbo 99.6 7.1E-18 2.4E-22 119.3 -2.8 87 1-91 69-155 (167)
4 2djp_A Hypothetical protein SB 99.6 9.3E-16 3.2E-20 95.2 4.4 58 36-106 3-64 (77)
5 2gu1_A Zinc peptidase; alpha/b 99.6 2.7E-15 9.1E-20 117.2 6.5 102 1-105 14-153 (361)
6 1e0g_A Membrane-bound lytic mu 99.5 1.6E-14 5.4E-19 81.5 5.2 44 62-105 3-48 (48)
7 2l9y_A CVNH-LYSM lectin; carbo 99.4 6E-13 2.1E-17 93.9 7.1 47 61-107 62-112 (167)
8 1e0g_A Membrane-bound lytic mu 99.1 4.4E-11 1.5E-15 67.1 4.0 39 1-44 9-47 (48)
9 2djp_A Hypothetical protein SB 99.1 4E-11 1.4E-15 74.0 3.5 42 1-45 22-63 (77)
10 4a1k_A Putative L, D-transpept 99.0 7.5E-10 2.6E-14 77.8 5.8 44 61-104 2-48 (165)
11 2gu1_A Zinc peptidase; alpha/b 98.7 9.4E-09 3.2E-13 80.1 4.8 46 61-106 7-60 (361)
12 4a1k_A Putative L, D-transpept 98.3 6.3E-07 2.1E-11 62.8 4.1 40 1-44 9-48 (165)
13 3slu_A M23 peptidase domain pr 97.7 0.00018 6.2E-09 56.2 9.4 101 1-104 21-160 (371)
14 3slu_A M23 peptidase domain pr 97.7 9E-05 3.1E-09 57.9 6.7 48 59-106 12-67 (371)
15 2glo_A Brinker CG9653-PA; prot 85.3 0.85 2.9E-05 25.4 3.1 24 66-89 18-45 (59)
16 2elh_A CG11849-PA, LD40883P; s 81.7 1.4 4.7E-05 26.6 3.2 24 67-90 36-59 (87)
17 1tc3_C Protein (TC3 transposas 81.7 1.7 6E-05 22.2 3.3 23 67-89 19-41 (51)
18 2jn6_A Protein CGL2762, transp 80.7 1.2 4.2E-05 27.1 2.8 23 69-91 23-45 (97)
19 2jrt_A Uncharacterized protein 80.5 1.5 5.1E-05 27.4 3.1 28 64-91 44-71 (95)
20 1jko_C HIN recombinase, DNA-in 80.0 1.4 4.7E-05 23.0 2.5 24 66-89 18-41 (52)
21 2lfc_A Fumarate reductase, fla 74.8 2 6.8E-05 29.0 2.6 27 65-91 91-121 (160)
22 2x48_A CAG38821; archeal virus 68.7 5.8 0.0002 21.2 3.2 24 66-89 28-51 (55)
23 2rn7_A IS629 ORFA; helix, all 67.0 1.8 6.2E-05 26.8 1.0 22 70-91 31-52 (108)
24 1rr7_A Middle operon regulator 66.4 5.1 0.00017 26.3 3.1 21 69-89 92-112 (129)
25 1pdn_C Protein (PRD paired); p 63.5 5.6 0.00019 24.5 2.8 23 67-89 31-53 (128)
26 1k78_A Paired box protein PAX5 60.4 6.6 0.00023 25.5 2.8 25 67-91 46-70 (149)
27 1u78_A TC3 transposase, transp 57.6 8 0.00028 24.4 2.8 24 66-89 19-42 (141)
28 3m62_B UV excision repair prot 53.7 8.2 0.00028 24.0 2.3 47 62-108 14-76 (106)
29 2oa4_A SIR5; structure, struct 53.5 9.4 0.00032 24.1 2.5 29 63-91 44-72 (101)
30 1xn7_A Hypothetical protein YH 52.5 12 0.00041 22.2 2.8 19 71-89 18-36 (78)
31 1neq_A DNA-binding protein NER 52.1 15 0.00051 21.3 3.1 23 67-89 20-42 (74)
32 2o8x_A Probable RNA polymerase 50.7 17 0.00056 20.0 3.1 23 67-89 29-51 (70)
33 4abx_A DNA repair protein RECN 49.7 11 0.00039 25.6 2.7 20 70-89 132-151 (175)
34 2p7v_B Sigma-70, RNA polymeras 49.2 20 0.00068 19.9 3.3 22 68-89 24-45 (68)
35 2ek5_A Predicted transcription 46.9 18 0.00063 23.2 3.3 24 66-89 22-48 (129)
36 2kxc_B ESPF-like protein; IRTK 46.6 13 0.00045 20.1 2.0 20 109-128 26-45 (48)
37 1hmj_A RPB5, protein (subunit 46.4 12 0.00043 22.4 2.1 42 63-104 11-59 (78)
38 3tqn_A Transcriptional regulat 45.8 21 0.00071 22.2 3.3 24 66-89 27-53 (113)
39 2lfc_A Fumarate reductase, fla 45.7 13 0.00045 24.8 2.5 24 1-27 94-121 (160)
40 2k27_A Paired box protein PAX- 45.6 13 0.00046 24.3 2.5 25 67-91 39-63 (159)
41 1fse_A GERE; helix-turn-helix 44.5 24 0.00083 19.5 3.2 23 66-88 23-45 (74)
42 2k02_A Ferrous iron transport 44.0 15 0.00051 22.4 2.3 32 71-102 18-49 (87)
43 3frw_A Putative Trp repressor 44.0 18 0.00062 23.0 2.7 26 66-91 55-80 (107)
44 1ku3_A Sigma factor SIGA; heli 43.8 27 0.00091 19.6 3.3 21 68-88 29-49 (73)
45 2k9q_A Uncharacterized protein 40.7 13 0.00044 21.1 1.6 22 70-91 45-66 (77)
46 1jer_A Cucumber stellacyanin; 39.9 9 0.00031 25.4 0.8 16 92-107 94-109 (138)
47 2b0l_A GTP-sensing transcripti 39.8 24 0.00081 21.8 2.8 19 71-89 45-63 (102)
48 3neu_A LIN1836 protein; struct 39.7 29 0.00099 22.0 3.3 24 66-89 31-57 (125)
49 4dyq_A Gene 1 protein; GP1, oc 38.9 15 0.00051 24.0 1.8 24 66-89 25-49 (140)
50 1frr_A Ferredoxin I; electron 38.9 31 0.0011 20.4 3.2 22 62-83 13-34 (95)
51 1x3u_A Transcriptional regulat 38.3 34 0.0012 19.2 3.2 23 67-89 29-51 (79)
52 2pij_A Prophage PFL 6 CRO; tra 38.2 30 0.001 18.7 2.9 24 65-89 10-33 (67)
53 4ham_A LMO2241 protein; struct 38.0 31 0.0011 22.0 3.3 24 66-89 32-58 (134)
54 3bd1_A CRO protein; transcript 37.9 30 0.001 19.6 2.9 22 67-89 10-31 (79)
55 2ga1_A Protein of unknown func 37.8 26 0.00088 22.2 2.7 24 66-89 61-85 (106)
56 2k5e_A Uncharacterized protein 37.6 23 0.0008 20.6 2.4 23 68-90 39-62 (73)
57 2l0k_A Stage III sporulation p 37.5 28 0.00096 21.3 2.8 22 68-89 19-40 (93)
58 2jpc_A SSRB; DNA binding prote 37.5 25 0.00085 18.8 2.4 23 66-88 10-32 (61)
59 1sfu_A 34L protein; protein/Z- 37.5 38 0.0013 20.1 3.3 35 67-104 25-64 (75)
60 1tty_A Sigma-A, RNA polymerase 37.4 38 0.0013 19.8 3.4 22 68-89 37-58 (87)
61 3qwg_A ESX-1 secretion-associa 37.2 10 0.00035 24.4 0.8 19 70-88 60-78 (123)
62 1uxc_A FRUR (1-57), fructose r 37.1 31 0.0011 19.4 2.8 21 71-91 2-23 (65)
63 1je8_A Nitrate/nitrite respons 37.1 36 0.0012 19.7 3.2 23 67-89 34-56 (82)
64 1frd_A Heterocyst [2Fe-2S] fer 37.1 34 0.0012 20.5 3.2 22 62-83 16-37 (98)
65 1jq4_A Methane monooxygenase c 36.9 36 0.0012 20.4 3.3 22 62-83 17-38 (98)
66 3i71_A Ethanolamine utilizatio 36.7 40 0.0014 19.2 3.1 21 66-86 15-35 (68)
67 2ofy_A Putative XRE-family tra 36.3 14 0.00049 21.2 1.3 20 70-89 58-77 (86)
68 3r1f_A ESX-1 secretion-associa 36.3 11 0.00037 24.6 0.8 19 70-88 62-80 (135)
69 2jml_A DNA binding domain/tran 36.0 21 0.0007 20.8 2.0 20 71-90 7-26 (81)
70 1j9i_A GPNU1 DBD;, terminase s 34.7 28 0.00095 19.5 2.4 21 71-91 4-24 (68)
71 1v4r_A Transcriptional repress 34.7 25 0.00085 21.2 2.3 26 66-91 29-57 (102)
72 2bt6_A Adrenodoxin 1; rutheniu 34.7 32 0.0011 21.1 2.9 23 62-84 19-41 (108)
73 2wlb_A ETP1-FD, electron trans 34.7 37 0.0013 20.5 3.1 22 62-83 16-37 (103)
74 3kor_A Possible Trp repressor; 33.8 24 0.00083 22.9 2.2 26 66-91 72-97 (119)
75 3hug_A RNA polymerase sigma fa 33.8 43 0.0015 19.6 3.3 22 67-88 51-72 (92)
76 1r8d_A Transcription activator 33.5 35 0.0012 21.0 2.9 21 71-91 4-24 (109)
77 2k53_A A3DK08 protein; NESG, C 33.1 39 0.0013 19.8 2.9 23 69-91 38-61 (76)
78 3op9_A PLI0006 protein; struct 32.7 17 0.00059 22.2 1.3 23 69-91 51-73 (114)
79 2l8n_A Transcriptional repress 32.7 39 0.0013 19.1 2.8 19 71-89 11-29 (67)
80 2cob_A LCOR protein; MLR2, KIA 32.5 38 0.0013 19.8 2.7 22 66-87 26-48 (70)
81 1a70_A Ferredoxin; iron-sulfur 32.0 46 0.0016 19.9 3.2 22 62-83 14-35 (97)
82 2ao9_A Phage protein; structur 32.0 45 0.0016 22.5 3.4 23 69-91 48-70 (155)
83 1hlv_A CENP-B, major centromer 31.8 28 0.00095 21.8 2.2 23 67-89 22-45 (131)
84 2vz4_A Tipal, HTH-type transcr 31.8 39 0.0013 20.8 2.9 21 71-91 3-23 (108)
85 1xlq_A Putidaredoxin, PDX; [2F 31.8 40 0.0014 20.5 2.9 21 62-82 13-33 (106)
86 3g5g_A Regulatory protein; tra 31.5 20 0.0007 21.7 1.5 20 70-89 71-90 (99)
87 1awd_A Ferredoxin; electron tr 31.4 44 0.0015 19.8 3.0 21 62-82 12-32 (94)
88 2xi8_A Putative transcription 31.1 50 0.0017 17.3 3.0 23 67-89 12-34 (66)
89 1czp_A Ferredoxin I; [2Fe-2S] 31.1 48 0.0017 19.8 3.2 22 62-83 16-37 (98)
90 3ah7_A [2Fe-2S]ferredoxin; [2F 30.7 40 0.0014 20.8 2.8 21 62-82 17-37 (113)
91 1iue_A Ferredoxin; electron tr 29.9 49 0.0017 19.9 3.1 22 62-83 14-35 (98)
92 1j1v_A Chromosomal replication 29.8 38 0.0013 20.6 2.5 20 71-90 6-25 (94)
93 2y5c_A Adrenodoxin-like protei 29.7 44 0.0015 20.5 2.9 20 63-82 19-38 (109)
94 1uwm_A Ferredoxin VI, FDVI; el 29.5 39 0.0013 20.6 2.6 21 62-82 13-33 (106)
95 2xvc_A ESCRT-III, SSO0910; cel 29.3 52 0.0018 18.6 2.8 19 71-89 27-45 (59)
96 1s7o_A Hypothetical UPF0122 pr 29.1 56 0.0019 20.4 3.3 22 67-88 36-57 (113)
97 1q06_A Transcriptional regulat 29.1 44 0.0015 21.5 2.9 21 71-91 2-22 (135)
98 3by6_A Predicted transcription 28.7 56 0.0019 20.7 3.3 24 66-89 29-55 (126)
99 3b7h_A Prophage LP1 protein 11 28.4 58 0.002 17.9 3.1 23 67-89 18-40 (78)
100 1i7h_A Ferredoxin; 2Fe-2S,elec 28.4 50 0.0017 20.3 3.0 22 62-83 17-38 (111)
101 1gdt_A GD resolvase, protein ( 28.1 53 0.0018 21.9 3.3 23 67-89 156-178 (183)
102 3bs3_A Putative DNA-binding pr 27.9 60 0.0021 17.7 3.1 25 66-90 20-44 (76)
103 1y6u_A XIS, excisionase from t 27.8 26 0.00088 20.3 1.4 40 4-44 18-57 (70)
104 3c57_A Two component transcrip 27.8 63 0.0021 19.2 3.3 23 67-89 40-62 (95)
105 1b0n_B Protein (SINI protein); 27.7 39 0.0013 18.9 2.0 18 72-89 18-35 (57)
106 1nd9_A Translation initiation 27.3 32 0.0011 17.6 1.6 20 71-90 4-23 (49)
107 3hh0_A Transcriptional regulat 27.2 49 0.0017 21.7 2.9 21 71-91 6-26 (146)
108 3lxf_A Ferredoxin; iron, iron- 27.2 61 0.0021 19.8 3.2 21 62-82 13-33 (104)
109 1ufm_A COP9 complex subunit 4; 27.1 42 0.0014 20.0 2.3 19 71-89 32-50 (84)
110 3qq6_A HTH-type transcriptiona 27.1 63 0.0021 18.2 3.1 27 63-89 17-43 (78)
111 1zug_A Phage 434 CRO protein; 27.1 63 0.0022 17.2 3.0 23 67-89 14-36 (71)
112 3pvv_A Chromosomal replication 27.1 45 0.0015 20.7 2.5 23 69-91 8-30 (101)
113 2l32_A Small archaeal modifier 27.1 28 0.00096 20.3 1.5 41 62-102 13-59 (74)
114 3trb_A Virulence-associated pr 27.1 28 0.00097 21.4 1.6 20 70-89 57-76 (104)
115 2jt1_A PEFI protein; solution 27.1 42 0.0014 19.7 2.3 17 71-87 26-42 (77)
116 3mzy_A RNA polymerase sigma-H 27.0 57 0.0019 20.5 3.2 23 66-88 121-143 (164)
117 3ggy_A Increased sodium tolera 26.3 42 0.0014 23.5 2.5 18 71-88 172-189 (193)
118 2r1j_L Repressor protein C2; p 26.1 71 0.0024 16.8 3.1 23 67-89 16-38 (68)
119 1b9r_A Protein (terpredoxin); 26.0 41 0.0014 20.4 2.2 21 62-82 13-33 (105)
120 1r69_A Repressor protein CI; g 25.8 70 0.0024 16.9 3.0 23 67-89 12-34 (69)
121 2r0q_C Putative transposon TN5 25.6 61 0.0021 22.2 3.3 23 67-89 173-195 (209)
122 3gpv_A Transcriptional regulat 25.5 55 0.0019 21.5 2.9 21 71-91 18-38 (148)
123 3gp4_A Transcriptional regulat 25.3 55 0.0019 21.3 2.8 21 71-91 4-24 (142)
124 1y7y_A C.AHDI; helix-turn-heli 25.3 73 0.0025 17.1 3.1 24 66-89 23-46 (74)
125 1xsv_A Hypothetical UPF0122 pr 25.3 73 0.0025 19.8 3.3 22 67-88 39-60 (113)
126 2kpj_A SOS-response transcript 25.2 76 0.0026 18.4 3.3 23 67-89 20-42 (94)
127 2b5a_A C.BCLI; helix-turn-heli 25.2 72 0.0025 17.4 3.1 23 67-89 21-43 (77)
128 1eik_A RNA polymerase subunit 25.1 13 0.00044 22.3 -0.3 41 63-103 13-60 (77)
129 3f52_A CLP gene regulator (CLG 25.1 31 0.001 21.1 1.5 22 70-91 71-92 (117)
130 4ayb_H DNA-directed RNA polyme 25.0 15 0.00051 22.3 -0.0 41 63-103 19-66 (84)
131 1l5p_A Ferredoxin; [2Fe-2S] cl 25.0 36 0.0012 20.3 1.8 21 62-82 12-32 (93)
132 2hin_A GP39, repressor protein 24.5 66 0.0023 18.5 2.8 19 71-89 12-30 (71)
133 1fc3_A SPO0A; response regulat 24.3 57 0.002 21.0 2.7 20 69-88 48-67 (120)
134 2heo_A Z-DNA binding protein 1 23.6 57 0.0019 18.2 2.4 19 71-89 27-45 (67)
135 3lsg_A Two-component response 22.9 71 0.0024 18.9 2.9 20 70-89 20-39 (103)
136 2a6c_A Helix-turn-helix motif; 22.9 92 0.0031 17.6 3.3 25 65-89 27-51 (83)
137 1rzs_A Antirepressor, regulato 22.7 69 0.0024 17.4 2.6 20 70-89 11-30 (61)
138 3omt_A Uncharacterized protein 22.7 64 0.0022 17.6 2.5 26 65-90 17-42 (73)
139 2rnj_A Response regulator prot 22.4 55 0.0019 19.1 2.3 23 67-89 42-64 (91)
140 2zp2_A Kinase A inhibitor; KIP 22.3 1.3E+02 0.0044 19.9 4.2 43 63-105 8-58 (141)
141 1adr_A P22 C2 repressor; trans 22.3 91 0.0031 16.8 3.1 23 67-89 16-38 (76)
142 3mn2_A Probable ARAC family tr 22.3 74 0.0025 19.0 2.9 20 70-89 19-38 (108)
143 2kfs_A Conserved hypothetical 22.3 49 0.0017 22.2 2.1 37 71-107 33-73 (148)
144 2zhg_A Redox-sensitive transcr 22.1 68 0.0023 21.2 2.8 22 70-91 12-33 (154)
145 3t72_q RNA polymerase sigma fa 22.0 84 0.0029 19.2 3.1 22 68-89 38-59 (99)
146 1y0p_A Fumarate reductase flav 22.0 45 0.0016 26.5 2.2 25 67-91 442-470 (571)
147 1wi9_A Protein C20ORF116 homol 21.8 81 0.0028 18.5 2.8 15 71-85 23-37 (72)
148 2htj_A P fimbrial regulatory p 21.7 80 0.0027 17.9 2.8 20 70-89 15-34 (81)
149 3s8q_A R-M controller protein; 21.6 92 0.0031 17.3 3.1 23 67-89 22-44 (82)
150 3oou_A LIN2118 protein; protei 21.4 77 0.0026 18.9 2.8 21 69-89 21-41 (108)
151 3oio_A Transcriptional regulat 21.2 77 0.0026 19.1 2.8 20 70-89 24-43 (113)
152 2fcw_A Alpha-2-macroglobulin r 21.0 65 0.0022 20.5 2.4 19 71-89 11-29 (109)
153 3t76_A VANU, transcriptional r 20.9 94 0.0032 18.3 3.1 28 64-91 32-59 (88)
154 3hui_A Ferredoxin; cytochrome 20.8 70 0.0024 20.5 2.6 21 62-82 34-54 (126)
155 2ef8_A C.ECOT38IS, putative tr 20.6 99 0.0034 17.1 3.1 23 67-89 21-43 (84)
156 2di3_A Bacterial regulatory pr 20.5 56 0.0019 22.7 2.3 24 66-89 22-48 (239)
157 3ulq_B Transcriptional regulat 20.5 1E+02 0.0035 18.2 3.2 24 66-89 41-64 (90)
158 2wiu_B HTH-type transcriptiona 20.3 1E+02 0.0034 17.3 3.1 24 66-89 22-45 (88)
159 2fi0_A Conserved domain protei 20.1 88 0.003 18.2 2.8 24 68-91 48-72 (81)
No 1
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.93 E-value=2.1e-25 Score=163.34 Aligned_cols=105 Identities=28% Similarity=0.412 Sum_probs=87.2
Q ss_pred CCCcHHHHH-HhhCCCCCCHHHHHHhCCCCCCCCCCCCCEEEECCCCCCCCcccccccccceEEEEecCCCCHHHHHHHh
Q 037542 1 SGDTFYSVS-TNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPVFCKCPDQTQLRNRVNYLVSYVLQPSENLSSVASRF 79 (129)
Q Consensus 1 ~GDTl~~IA-~~~~~~lts~~~l~~~N~~~~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~~~~~y~V~~GDTl~~IA~~~ 79 (129)
+|||||.|| ++|+ +++++++|+++|++ +++.|.+||+|.||..|.|+.... ........+|+|++|||||+||++|
T Consensus 85 ~GDTL~~IA~~~y~-~lvt~~~L~~~N~~-~~~~l~~Gq~L~IP~~~~~~~~~~-~~~~~~~~~Y~V~~GDTL~~IA~~f 161 (212)
T 4eby_A 85 QEDTYERVAISNYA-NLTTMESLQARNPF-PATNIPLSATLNVLVNCSCGDESV-SKDFGLFVTYPLRPEDSLSSIARSS 161 (212)
T ss_dssp TTCCHHHHHHTTTT-TSSCHHHHHHHCCS-CTTCCCTTCEEEEEEECCCCCTTT-CSSCCCEEEEECCTTCCHHHHHHHH
T ss_pred CCCcHHHHHHHhcC-CCCCHHHHHHhcCC-CcccCCCCCEEEEcCCCcCCCccc-ccCCCCeEEEEECCCCcHHHHHHHH
Confidence 599999999 7887 34499999999995 678999999999999998865432 2333445789999999999999999
Q ss_pred CCCHHHHHhhcC--CCCCCCCEEEEcCCCCC
Q 037542 80 GIETQAIIDVNG--NNIRPFDTLFVPVARLP 108 (129)
Q Consensus 80 ~vs~~~l~~~N~--~~l~~Gq~L~IP~~~~p 108 (129)
|+++++|++||+ +.+..++.|+||.....
T Consensus 162 gvsv~~L~~~N~~~~~~~~~g~l~IP~~~~~ 192 (212)
T 4eby_A 162 GVSADILQRYNPGVNFNSGNGIVYVPGRDPN 192 (212)
T ss_dssp TSCHHHHHHHSTTCCTTSCSSEEEEECCCTT
T ss_pred CcCHHHHHHhcCCCccCCCCCEEEecCCCCC
Confidence 999999999999 54455556999988743
No 2
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.92 E-value=1.8e-25 Score=163.66 Aligned_cols=100 Identities=20% Similarity=0.278 Sum_probs=86.6
Q ss_pred CCCcHHHHHHhhCCCCCCH--------HHHHHhC-CCCCCCCCCCCCEEEECCCCCCCCcccccccccceEEEEecCCCC
Q 037542 1 SGDTFYSVSTNKYQNLTTY--------QSVEVVN-PAFVPTKLEVGDVFIFPVFCKCPDQTQLRNRVNYLVSYVLQPSEN 71 (129)
Q Consensus 1 ~GDTl~~IA~~~~~~lts~--------~~l~~~N-~~~~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~~~~~y~V~~GDT 71 (129)
+|||||.||++|++ ++ ++|+++| .+.+++.|.+||.|+||..|.|..... .....+|+|++|||
T Consensus 16 ~GDTL~~IA~~~~v---sv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~~~~----~~~~~~Y~V~~GDT 88 (212)
T 4eby_A 16 NGTTLSVINQNLNS---SIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGDF----LGHNFSYSVRQEDT 88 (212)
T ss_dssp TTCCHHHHHHHTCC---SSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEECCEEETTTE----EEEEEEEECCTTCC
T ss_pred CCCCHHHHHHHHCC---CchhccccCHHHHHHhccCCCCcCccCCCCEEEEeccccccCCcc----ccCceEEEecCCCc
Confidence 59999999999999 77 9999999 665678999999999999887753211 12346899999999
Q ss_pred HHHHH-HHhC--CCHHHHHhhcC---CCCCCCCEEEEcCCCC
Q 037542 72 LSSVA-SRFG--IETQAIIDVNG---NNIRPFDTLFVPVARL 107 (129)
Q Consensus 72 l~~IA-~~~~--vs~~~l~~~N~---~~l~~Gq~L~IP~~~~ 107 (129)
||.|| ++|+ +++++|+++|+ +.|++||+|.||..+.
T Consensus 89 L~~IA~~~y~~lvt~~~L~~~N~~~~~~l~~Gq~L~IP~~~~ 130 (212)
T 4eby_A 89 YERVAISNYANLTTMESLQARNPFPATNIPLSATLNVLVNCS 130 (212)
T ss_dssp HHHHHHTTTTTSSCHHHHHHHCCSCTTCCCTTCEEEEEEECC
T ss_pred HHHHHHHhcCCCCCHHHHHHhcCCCcccCCCCCEEEEcCCCc
Confidence 99999 7999 99999999999 7899999999998664
No 3
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.63 E-value=7.1e-18 Score=119.27 Aligned_cols=87 Identities=11% Similarity=0.005 Sum_probs=68.3
Q ss_pred CCCcHHHHHHhhCCCCCCHHHHHHhCCCCCCCCCCCCCEEEECCCCCCCCcccccccccceEEEEecCCCCHHHHHHHhC
Q 037542 1 SGDTFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPVFCKCPDQTQLRNRVNYLVSYVLQPSENLSSVASRFG 80 (129)
Q Consensus 1 ~GDTl~~IA~~~~~~lts~~~l~~~N~~~~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~~~~~y~V~~GDTl~~IA~~~~ 80 (129)
+|||||.||++|++ ++.+|+++|++.+++.|.+||+|+||.....+..... ........|+|++||||++||++||
T Consensus 69 ~GDTL~~IA~~~~~---~~~~l~~~N~~~~~~~i~~Gq~L~ip~~~~~~~~~~~-~~~~~~~~~~v~~GdtL~aIA~r~G 144 (167)
T 2l9y_A 69 QGDTLRDIGRRFDC---DFHEIARRNNIQNEDLIYPGQVLQVPTKGGSGGGAGN-FWDSARDVRLVDGGKVLEAELRYSG 144 (167)
T ss_dssp TTCCHHHHHHHTTC---CHHHHHHHHTCCGGGCCCTTEEEEESCCCCCSSSSCC-GGGGEEEEEEETTTTEEEEEEEETT
T ss_pred CCCcHHHHHHHcCC---CHHHHHHHcCCCCcccccCCCEEEEcCCCCccccccc-cccccceEEEeCCcCChHHHHHHcC
Confidence 69999999999998 9999999999988899999999999975432110000 0111235799999999999999999
Q ss_pred CCHHHHHhhcC
Q 037542 81 IETQAIIDVNG 91 (129)
Q Consensus 81 vs~~~l~~~N~ 91 (129)
.++..++.+|.
T Consensus 145 ~~v~s~i~Ln~ 155 (167)
T 2l9y_A 145 GWNRSRIYLDE 155 (167)
T ss_dssp EEEEEEECGGG
T ss_pred CceEEEEEccc
Confidence 77776666665
No 4
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=9.3e-16 Score=95.17 Aligned_cols=58 Identities=24% Similarity=0.398 Sum_probs=50.5
Q ss_pred CCCEEEECCCCCCCCcccccccccceEEEEecCCCCHHHHHHHhCCCHHHHHhhcC----CCCCCCCEEEEcCCC
Q 037542 36 VGDVFIFPVFCKCPDQTQLRNRVNYLVSYVLQPSENLSSVASRFGIETQAIIDVNG----NNIRPFDTLFVPVAR 106 (129)
Q Consensus 36 ~Gq~L~IP~~~~~~~~~~~~~~~~~~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~----~~l~~Gq~L~IP~~~ 106 (129)
.||.|.||.. .....|+|++|||||.||++|++++++|+++|+ +.|++||+|+||...
T Consensus 3 ~Gq~l~ip~~-------------~~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~l~~~~~l~~Gq~l~iP~~~ 64 (77)
T 2djp_A 3 SGSSGCSPVR-------------ERRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILT 64 (77)
T ss_dssp CCCCCCCCCC-------------EEEEEECCCTTCCHHHHHHHHTCCHHHHHHHHTCCCSSCGGGSSCEEEEEEC
T ss_pred CCcEeeccCC-------------CCcEEEEECCCCcHHHHHHHHCcCHHHHHHHcCCCCccccCCCCEEEECCCC
Confidence 5888888842 124689999999999999999999999999999 579999999999754
No 5
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=99.57 E-value=2.7e-15 Score=117.19 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=78.1
Q ss_pred CCCcHHHHHHhhCCCCCCHHHHHHhCCCCC----CCCCCCCCEEEECCCCCCCCc----------c-c---c-c------
Q 037542 1 SGDTFYSVSTNKYQNLTTYQSVEVVNPAFV----PTKLEVGDVFIFPVFCKCPDQ----------T-Q---L-R------ 55 (129)
Q Consensus 1 ~GDTl~~IA~~~~~~lts~~~l~~~N~~~~----~~~l~~Gq~L~IP~~~~~~~~----------~-~---~-~------ 55 (129)
+||||+.||++|++ +.++|.++|++.. .+.|++||+|.||........ . . . .
T Consensus 14 ~GDTL~~Ia~r~gv---s~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~f~~~ 90 (361)
T 2gu1_A 14 VGDTLSGIFAQLGV---PYSILQKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTRENDGSFSYD 90 (361)
T ss_dssp TTCCHHHHHHHTTC---CHHHHHHHHHHGGGTCCGGGCCTTCEEEEEECTTSCEEEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred CCCcHHHHHHHcCC---CHHHHHHHHhhcccccchhcCCCCCEEEEEECCCCcceEEEEEcCccceEEEEecCCCcceee
Confidence 69999999999999 9999999998742 468999999999964321000 0 0 0 0
Q ss_pred ----ccccceEEEEecCCCCHHHHHHHhCCCHHHHHhhcC---------CCCCCCCEEEEcCC
Q 037542 56 ----NRVNYLVSYVLQPSENLSSVASRFGIETQAIIDVNG---------NNIRPFDTLFVPVA 105 (129)
Q Consensus 56 ----~~~~~~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~---------~~l~~Gq~L~IP~~ 105 (129)
........|.|+.|||||.||++||++.++|++||+ ..|++||.|.|+..
T Consensus 91 ~~~~~~~~~~~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~~~ 153 (361)
T 2gu1_A 91 FQEISGEWREILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDILVK 153 (361)
T ss_dssp EEECCCEEEEEEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEEEE
T ss_pred ecccCceEEEEEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEEEE
Confidence 001123478999999999999999999999999998 24999999999853
No 6
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.52 E-value=1.6e-14 Score=81.48 Aligned_cols=44 Identities=30% Similarity=0.543 Sum_probs=41.2
Q ss_pred EEEEecCCCCHHHHHHHhCCCHHHHHhhcC--CCCCCCCEEEEcCC
Q 037542 62 VSYVLQPSENLSSVASRFGIETQAIIDVNG--NNIRPFDTLFVPVA 105 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~--~~l~~Gq~L~IP~~ 105 (129)
.+|+|++|||||+||++|++++++|+++|+ +.|++||+|.||..
T Consensus 3 ~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~~~~~l~~G~~l~ip~~ 48 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVK 48 (48)
T ss_dssp CEEEECTTCCHHHHHHHHTCCHHHHHHHCSCGGGCCTTEEEECCCC
T ss_pred EEEEEcCCCcHHHHHHHHCcCHHHHHHhCCCCCcCCcCCEEEEecC
Confidence 479999999999999999999999999996 78999999999963
No 7
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.39 E-value=6e-13 Score=93.91 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=43.5
Q ss_pred eEEEEecCCCCHHHHHHHhCCCHHHHHhhcC----CCCCCCCEEEEcCCCC
Q 037542 61 LVSYVLQPSENLSSVASRFGIETQAIIDVNG----NNIRPFDTLFVPVARL 107 (129)
Q Consensus 61 ~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~----~~l~~Gq~L~IP~~~~ 107 (129)
..+|+|++|||||.||++|++++.+|+++|+ +.|++||+|.||....
T Consensus 62 ~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~~~~~~~i~~Gq~L~ip~~~~ 112 (167)
T 2l9y_A 62 TATVTVQQGDTLRDIGRRFDCDFHEIARRNNIQNEDLIYPGQVLQVPTKGG 112 (167)
T ss_dssp CEEEEECTTCCHHHHHHHTTCCHHHHHHHHTCCGGGCCCTTEEEEESCCCC
T ss_pred CceEEECCCCcHHHHHHHcCCCHHHHHHHcCCCCcccccCCCEEEEcCCCC
Confidence 3689999999999999999999999999999 6899999999997653
No 8
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.13 E-value=4.4e-11 Score=67.08 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=36.5
Q ss_pred CCCcHHHHHHhhCCCCCCHHHHHHhCCCCCCCCCCCCCEEEECC
Q 037542 1 SGDTFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPV 44 (129)
Q Consensus 1 ~GDTl~~IA~~~~~~lts~~~l~~~N~~~~~~~l~~Gq~L~IP~ 44 (129)
+|||||.||++|++ ++++|+++|+ +++.|.+||+|.||.
T Consensus 9 ~GDtl~~Ia~~~~~---~~~~l~~~N~--~~~~l~~G~~l~ip~ 47 (48)
T 1e0g_A 9 KGDSLSSIAKRHGV---NIKDVMRWNS--DTANLQPGDKLTLFV 47 (48)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHHHCS--CGGGCCTTEEEECCC
T ss_pred CCCcHHHHHHHHCc---CHHHHHHhCC--CCCcCCcCCEEEEec
Confidence 59999999999999 9999999999 678899999999995
No 9
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=4e-11 Score=73.99 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=39.1
Q ss_pred CCCcHHHHHHhhCCCCCCHHHHHHhCCCCCCCCCCCCCEEEECCC
Q 037542 1 SGDTFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPVF 45 (129)
Q Consensus 1 ~GDTl~~IA~~~~~~lts~~~l~~~N~~~~~~~l~~Gq~L~IP~~ 45 (129)
+|||||.||++|++ ++++|+++|++.+++.|.+||+|.||..
T Consensus 22 ~GDTL~~IA~~~~~---~~~~l~~~N~l~~~~~l~~Gq~l~iP~~ 63 (77)
T 2djp_A 22 PGDTLAGLALKYGV---TMEQIKRANRLYTNDSIFLKKTLYIPIL 63 (77)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHHHHTCCCSSCGGGSSCEEEEEE
T ss_pred CCCcHHHHHHHHCc---CHHHHHHHcCCCCccccCCCCEEEECCC
Confidence 59999999999999 9999999999976789999999999974
No 10
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=98.97 E-value=7.5e-10 Score=77.79 Aligned_cols=44 Identities=23% Similarity=0.506 Sum_probs=40.9
Q ss_pred eEEEEecCCCCHHHHHHHhCCCHHHHHhhcC---CCCCCCCEEEEcC
Q 037542 61 LVSYVLQPSENLSSVASRFGIETQAIIDVNG---NNIRPFDTLFVPV 104 (129)
Q Consensus 61 ~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~---~~l~~Gq~L~IP~ 104 (129)
..+|+|++||||+.||++|++...+|+++|+ ..|.+|+.|.||.
T Consensus 2 ~~~y~V~~GdtL~~IA~~f~~g~~~l~~aNp~vd~~l~~g~~i~ip~ 48 (165)
T 4a1k_A 2 MLTYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPG 48 (165)
T ss_dssp CEEEECCTTCCHHHHHHHTTCCHHHHHHHCGGGGGCCCTTCEEEETT
T ss_pred CEEEEECCCCCHHHHHHHhCCCHHHHHHhCccCCCccCCCccccCcc
Confidence 3689999999999999999999999999999 4689999999994
No 11
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=98.72 E-value=9.4e-09 Score=80.12 Aligned_cols=46 Identities=15% Similarity=0.340 Sum_probs=42.0
Q ss_pred eEEEEecCCCCHHHHHHHhCCCHHHHHhhcC--------CCCCCCCEEEEcCCC
Q 037542 61 LVSYVLQPSENLSSVASRFGIETQAIIDVNG--------NNIRPFDTLFVPVAR 106 (129)
Q Consensus 61 ~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~--------~~l~~Gq~L~IP~~~ 106 (129)
...|+|++||||+.||++||+++++|.++|+ +.|++||.|.||...
T Consensus 7 ~~~~~Vk~GDTL~~Ia~r~gvs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~~~ 60 (361)
T 2gu1_A 7 RIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMMDD 60 (361)
T ss_dssp CEEEECCTTCCHHHHHHHTTCCHHHHHHHHHHGGGTCCGGGCCTTCEEEEEECT
T ss_pred ceEEEECCCCcHHHHHHHcCCCHHHHHHHHhhcccccchhcCCCCCEEEEEECC
Confidence 3689999999999999999999999999998 369999999999653
No 12
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=98.27 E-value=6.3e-07 Score=62.76 Aligned_cols=40 Identities=23% Similarity=0.393 Sum_probs=36.0
Q ss_pred CCCcHHHHHHhhCCCCCCHHHHHHhCCCCCCCCCCCCCEEEECC
Q 037542 1 SGDTFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPV 44 (129)
Q Consensus 1 ~GDTl~~IA~~~~~~lts~~~l~~~N~~~~~~~l~~Gq~L~IP~ 44 (129)
+||||..||++|++ +..+|+++|+..++ .|.+|+.|.||.
T Consensus 9 ~GdtL~~IA~~f~~---g~~~l~~aNp~vd~-~l~~g~~i~ip~ 48 (165)
T 4a1k_A 9 QGDTLNSIAADFRI---STAALLQANPSLQA-GLTAGQSIVIPG 48 (165)
T ss_dssp TTCCHHHHHHHTTC---CHHHHHHHCGGGGG-CCCTTCEEEETT
T ss_pred CCCCHHHHHHHhCC---CHHHHHHhCccCCC-ccCCCccccCcc
Confidence 69999999999999 99999999998654 478999999985
No 13
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=97.74 E-value=0.00018 Score=56.24 Aligned_cols=101 Identities=9% Similarity=0.065 Sum_probs=69.2
Q ss_pred CCCcHHHHHHhhCCCCCCHHHHHHhCCCC----CCCCCCCCCEEEECCCCCCC-----------Cccc---ccccccc--
Q 037542 1 SGDTFYSVSTNKYQNLTTYQSVEVVNPAF----VPTKLEVGDVFIFPVFCKCP-----------DQTQ---LRNRVNY-- 60 (129)
Q Consensus 1 ~GDTl~~IA~~~~~~lts~~~l~~~N~~~----~~~~l~~Gq~L~IP~~~~~~-----------~~~~---~~~~~~~-- 60 (129)
+||||..|-+++++ +..++.+++... +...|++||.|.+-...... .... .....+.
T Consensus 21 ~GDTL~~IL~r~Gl---s~~di~~i~~~~~~~~~l~~LrpGq~l~i~~~~~~~l~~l~~~~~~~~~~~~v~i~~~dg~f~ 97 (371)
T 3slu_A 21 PGDSLADVLARSGM---ARDEIARITEKYGGEADLRHLRADQSVHVLVGGDGGAREVQFFTDEDGERNLVALEKKGGIWR 97 (371)
T ss_dssp TTCCHHHHHHHTTC---CHHHHHHHHTTC------CCBCSSSEEEEEECTTSCEEEEEEEECCTTEEEEEEEEEETTEEE
T ss_pred CCCcHHHHHHHcCC---CHHHHHHHHHhccccCchhhCCCCCEEEEEECCCCCeEEEEEEecCCCceeEEEEEecCCeeE
Confidence 59999999999999 888888776543 34689999999997643210 0000 0000000
Q ss_pred -----------eEEEEecCCCCHHHHHHHhCCCHHHHHhhcC--------CCCCCCCEEEEcC
Q 037542 61 -----------LVSYVLQPSENLSSVASRFGIETQAIIDVNG--------NNIRPFDTLFVPV 104 (129)
Q Consensus 61 -----------~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~--------~~l~~Gq~L~IP~ 104 (129)
...+.+.-.++||..|++.|++.+.+++++. ..|++|+.+.|..
T Consensus 98 ~~~~~~~~~~~~~~~~g~I~~Sl~~a~~~agl~~~~~~~l~~i~~~~idf~~l~~GD~f~v~~ 160 (371)
T 3slu_A 98 RSASEADMKVLPTLRSVVVKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRLIY 160 (371)
T ss_dssp ECCCGGGEEEEEEEEEEECSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTCCCTTCEEEEEE
T ss_pred EEeeecccceeeeEEEEEEeccHHHHHHHcCCCHHHHHHHHHHHccCcCHHHcCCCCEEEEEE
Confidence 0112234489999999999999999888886 4589999998865
No 14
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=97.67 E-value=9e-05 Score=57.94 Aligned_cols=48 Identities=25% Similarity=0.439 Sum_probs=42.1
Q ss_pred cceEEEEecCCCCHHHHHHHhCCCHHHHHhhcC--------CCCCCCCEEEEcCCC
Q 037542 59 NYLVSYVLQPSENLSSVASRFGIETQAIIDVNG--------NNIRPFDTLFVPVAR 106 (129)
Q Consensus 59 ~~~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~--------~~l~~Gq~L~IP~~~ 106 (129)
.....|+|++||||..|-+++|++..++.+++. ..|++||.|.+-...
T Consensus 12 ~~W~~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i~~~~ 67 (371)
T 3slu_A 12 AYWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQSVHVLVGG 67 (371)
T ss_dssp CEEEEEECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSSSEEEEEECT
T ss_pred CceEEEEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCCCEEEEEECC
Confidence 345789999999999999999999999888865 689999999998654
No 15
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=85.30 E-value=0.85 Score=25.42 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=21.0
Q ss_pred ecCCCC----HHHHHHHhCCCHHHHHhh
Q 037542 66 LQPSEN----LSSVASRFGIETQAIIDV 89 (129)
Q Consensus 66 V~~GDT----l~~IA~~~~vs~~~l~~~ 89 (129)
+..|.+ +..||++|||+...|..|
T Consensus 18 ~~~g~s~~~~~~~vA~~~gIs~~tl~~W 45 (59)
T 2glo_A 18 YRNDNDCKGNQRATARKYNIHRRQIQKW 45 (59)
T ss_dssp HHHCTTTTTCHHHHHHHTTSCHHHHHHH
T ss_pred HHcCCCcchHHHHHHHHHCcCHHHHHHH
Confidence 356778 999999999999999888
No 16
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=81.67 E-value=1.4 Score=26.59 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.3
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhhc
Q 037542 67 QPSENLSSVASRFGIETQAIIDVN 90 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~N 90 (129)
..|.++..||++|||+...|.+|=
T Consensus 36 ~~g~s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 36 HDGESKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHHH
Confidence 578999999999999999888873
No 17
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=81.65 E-value=1.7 Score=22.15 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=20.5
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
..|-+...||+.+|++...+..+
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~ 41 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVY 41 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57889999999999999888776
No 18
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=80.71 E-value=1.2 Score=27.10 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhCCCHHHHHhhcC
Q 037542 69 SENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~~~N~ 91 (129)
|.++..||+.|||+...|.+|=.
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CChHHHHHHHHCcCHHHHHHHHH
Confidence 88999999999999999988844
No 19
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=80.50 E-value=1.5 Score=27.41 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=23.9
Q ss_pred EEecCCCCHHHHHHHhCCCHHHHHhhcC
Q 037542 64 YVLQPSENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 64 y~V~~GDTl~~IA~~~~vs~~~l~~~N~ 91 (129)
+...-+.++..+|++|+|+.++|..|-.
T Consensus 44 ~~~~g~~s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 44 AVIHGLITEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp HHHTTSSCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4456677999999999999999999965
No 20
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=80.02 E-value=1.4 Score=23.00 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.3
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHhh
Q 037542 66 LQPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
+..|-++..||+.+|++...|.++
T Consensus 18 ~~~g~s~~~ia~~lgvs~~Tv~r~ 41 (52)
T 1jko_C 18 LEKGHPRQQLAIIFGIGVSTLYRY 41 (52)
T ss_dssp HHTTCCHHHHHHTTSCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHH
Confidence 356889999999999999999877
No 21
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=74.83 E-value=2 Score=28.99 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=22.0
Q ss_pred EecCCCCHHHHHHHhCCCHH----HHHhhcC
Q 037542 65 VLQPSENLSSVASRFGIETQ----AIIDVNG 91 (129)
Q Consensus 65 ~V~~GDTl~~IA~~~~vs~~----~l~~~N~ 91 (129)
.+.++|||..+|++.|++.+ .|.++|.
T Consensus 91 ~~~kadTleeLA~~~gid~~~L~~TV~~yN~ 121 (160)
T 2lfc_A 91 PVFVKGSLESAAEQAGIVVDELVQTVKNYQG 121 (160)
T ss_dssp CSEECSSHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ceEecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34678999999999999875 5777885
No 22
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=68.71 E-value=5.8 Score=21.16 Aligned_cols=24 Identities=8% Similarity=0.228 Sum_probs=20.6
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHhh
Q 037542 66 LQPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
...|-|...||+.+|++...+..+
T Consensus 28 ~~~g~s~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 28 AKMGYTVQQIANALGVSERKVRRY 51 (55)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 357899999999999999888765
No 23
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=66.97 E-value=1.8 Score=26.81 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=19.6
Q ss_pred CCHHHHHHHhCCCHHHHHhhcC
Q 037542 70 ENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~N~ 91 (129)
.++..||+.|||+...|..|=.
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHH
Confidence 6899999999999999988844
No 24
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=66.38 E-value=5.1 Score=26.27 Aligned_cols=21 Identities=19% Similarity=0.544 Sum_probs=19.1
Q ss_pred CCCHHHHHHHhCCCHHHHHhh
Q 037542 69 SENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~~~ 89 (129)
|.++..+|++||+|...|.+.
T Consensus 92 G~n~~eLArkYgLSer~I~~I 112 (129)
T 1rr7_A 92 GRNVSELTTRYGVTFNTVYKA 112 (129)
T ss_dssp SSCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
Confidence 889999999999999888765
No 25
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=63.47 E-value=5.6 Score=24.54 Aligned_cols=23 Identities=0% Similarity=0.115 Sum_probs=20.7
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
..|.++..||+.||++...|.+|
T Consensus 31 ~~g~s~~~ia~~lgis~~Tv~~w 53 (128)
T 1pdn_C 31 ADGIRPCVISRQLRVSHGCVSKI 53 (128)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999999888777
No 26
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=60.39 E-value=6.6 Score=25.46 Aligned_cols=25 Identities=4% Similarity=0.210 Sum_probs=21.9
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhhcC
Q 037542 67 QPSENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~N~ 91 (129)
..|.++..||+.||++...|.+|=.
T Consensus 46 ~~G~s~~~iA~~lgis~~TV~rw~~ 70 (149)
T 1k78_A 46 HQGVRPCDISRQLRVSHGCVSKILG 70 (149)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 5799999999999999988888743
No 27
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=57.60 E-value=8 Score=24.45 Aligned_cols=24 Identities=8% Similarity=0.022 Sum_probs=21.5
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHhh
Q 037542 66 LQPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
+..|.+...||+.||++...+.+|
T Consensus 19 ~~~G~s~~~ia~~lgis~~Tv~r~ 42 (141)
T 1u78_A 19 KLLNVSLHEMSRKISRSRHCIRVY 42 (141)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 367999999999999999988887
No 28
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=53.67 E-value=8.2 Score=24.01 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=29.5
Q ss_pred EEEEecCCCCHHH----HHHHhCCCHHHHHh-hcC-----------CCCCCCCEEEEcCCCCC
Q 037542 62 VSYVLQPSENLSS----VASRFGIETQAIID-VNG-----------NNIRPFDTLFVPVARLP 108 (129)
Q Consensus 62 ~~y~V~~GDTl~~----IA~~~~vs~~~l~~-~N~-----------~~l~~Gq~L~IP~~~~p 108 (129)
....|.+.||+.. |++++|+..+..+= +++ ..|+.|.+|.+=+....
T Consensus 14 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 14 VPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp EEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 4556778888876 45566776654211 122 46899999999887643
No 29
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=53.45 E-value=9.4 Score=24.10 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=24.3
Q ss_pred EEEecCCCCHHHHHHHhCCCHHHHHhhcC
Q 037542 63 SYVLQPSENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 63 ~y~V~~GDTl~~IA~~~~vs~~~l~~~N~ 91 (129)
.|+..-+-|+...|++|+++.++|..|=.
T Consensus 44 ~~v~~g~lS~~EAa~ry~Is~~ei~~W~r 72 (101)
T 2oa4_A 44 RGVIYGLITLAEAKQTYGLSDEEFNSWVS 72 (101)
T ss_dssp HHHHHTTCCHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 45566677899999999999999998854
No 30
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=52.48 E-value=12 Score=22.22 Aligned_cols=19 Identities=5% Similarity=0.144 Sum_probs=15.7
Q ss_pred CHHHHHHHhCCCHHHHHhh
Q 037542 71 NLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~ 89 (129)
++..||+.|+++...|.+.
T Consensus 18 sv~eLa~~l~VS~~TIRrd 36 (78)
T 1xn7_A 18 EAAQISQTLNTPQPMINAM 36 (78)
T ss_dssp CHHHHHHHTTCCHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHH
Confidence 7899999999998776543
No 31
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=52.09 E-value=15 Score=21.33 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=20.2
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
+.|=|+..+|++.|++...|..+
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~ 42 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANA 42 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 67889999999999999888866
No 32
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=50.69 E-value=17 Score=19.98 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=19.7
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
-.|-++..||+.+|++...+...
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~ 51 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSR 51 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 56889999999999999887654
No 33
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=49.74 E-value=11 Score=25.61 Aligned_cols=20 Identities=15% Similarity=0.489 Sum_probs=16.9
Q ss_pred CCHHHHHHHhCCCHHHHHhh
Q 037542 70 ENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~ 89 (129)
+.|..+++|||+++++|..+
T Consensus 132 ~~l~~L~RKyg~~~eell~~ 151 (175)
T 4abx_A 132 SALSKLKNKYGPTLEDVVEF 151 (175)
T ss_dssp HHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 35888999999999998765
No 34
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=49.24 E-value=20 Score=19.89 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHhh
Q 037542 68 PSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 68 ~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
.|-|+..||+.+|++...+...
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~ 45 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQI 45 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHH
Confidence 5889999999999999887654
No 35
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=46.93 E-value=18 Score=23.22 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=18.7
Q ss_pred ecCCC---CHHHHHHHhCCCHHHHHhh
Q 037542 66 LQPSE---NLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 66 V~~GD---Tl~~IA~~~~vs~~~l~~~ 89 (129)
.++|| +...+|++||++...+.++
T Consensus 22 l~~G~~LPse~~La~~~gvSr~tVr~A 48 (129)
T 2ek5_A 22 LSIDQRVPSTNELAAFHRINPATARNG 48 (129)
T ss_dssp SCTTSCBCCHHHHHHHTTCCHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 46777 6779999999988766654
No 36
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=46.61 E-value=13 Score=20.14 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCCCCCcccC
Q 037542 109 ELKQPAVAPSSAPPSRKTER 128 (129)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~ 128 (129)
.....++.+++|||+...++
T Consensus 26 ~~~p~rPa~P~Pt~~~~~~~ 45 (48)
T 2kxc_B 26 EHIPPAPNWPAPTPPVQNEQ 45 (48)
T ss_pred ccCCCCCCCCCCCCcccccc
Confidence 34444555555555555443
No 37
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=46.36 E-value=12 Score=22.44 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=34.3
Q ss_pred EEEecCCCCHHHHHHHhCCCHHHHHhhcC-------CCCCCCCEEEEcC
Q 037542 63 SYVLQPSENLSSVASRFGIETQAIIDVNG-------NNIRPFDTLFVPV 104 (129)
Q Consensus 63 ~y~V~~GDTl~~IA~~~~vs~~~l~~~N~-------~~l~~Gq~L~IP~ 104 (129)
.|.+-.-|-...+-++|++...+|-+.-. -.+++||.+.|--
T Consensus 11 kH~iLs~eEk~~lL~~y~i~~~qLPrI~~~DPvar~~G~k~GdVvkI~R 59 (78)
T 1hmj_A 11 KHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIR 59 (78)
T ss_pred CeEECCHHHHHHHHHHcCCCHHHCCeeeCcCHhhHHhCCCCCCEEEEEE
Confidence 57777778888899999999988776654 4799999999953
No 38
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=45.81 E-value=21 Score=22.22 Aligned_cols=24 Identities=8% Similarity=0.303 Sum_probs=18.8
Q ss_pred ecCCC---CHHHHHHHhCCCHHHHHhh
Q 037542 66 LQPSE---NLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 66 V~~GD---Tl~~IA~~~~vs~~~l~~~ 89 (129)
..+|| +...+|++||++...+.++
T Consensus 27 ~~~G~~lPs~~~La~~~~vSr~tvr~a 53 (113)
T 3tqn_A 27 YVEGEMIPSIRKISTEYQINPLTVSKA 53 (113)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 45677 6789999999988776655
No 39
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=45.69 E-value=13 Score=24.77 Aligned_cols=24 Identities=8% Similarity=-0.040 Sum_probs=18.5
Q ss_pred CCCcHHHHHHhhCCCCCCHHH----HHHhCC
Q 037542 1 SGDTFYSVSTNKYQNLTTYQS----VEVVNP 27 (129)
Q Consensus 1 ~GDTl~~IA~~~~~~lts~~~----l~~~N~ 27 (129)
++|||..+|++.++ ..+. |.++|.
T Consensus 94 kadTleeLA~~~gi---d~~~L~~TV~~yN~ 121 (160)
T 2lfc_A 94 VKGSLESAAEQAGI---VVDELVQTVKNYQG 121 (160)
T ss_dssp ECSSHHHHHHHHTC---CHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHhCC---CHHHHHHHHHHHHH
Confidence 37999999999998 6554 456774
No 40
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=45.59 E-value=13 Score=24.29 Aligned_cols=25 Identities=4% Similarity=0.210 Sum_probs=22.5
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhhcC
Q 037542 67 QPSENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~N~ 91 (129)
..|.++..||+.||++...|.+|=.
T Consensus 39 ~~G~s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 39 HQGVRPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp HHTCCHHHHHHHHTCCSHHHHHHHC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 5799999999999999999998855
No 41
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=44.51 E-value=24 Score=19.47 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=19.4
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHh
Q 037542 66 LQPSENLSSVASRFGIETQAIID 88 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~ 88 (129)
+..|-+...||+.+|++...+..
T Consensus 23 ~~~g~s~~eIA~~l~is~~tV~~ 45 (74)
T 1fse_A 23 LVQDKTTKEIASELFISEKTVRN 45 (74)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHH
Confidence 36788999999999999877654
No 42
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=43.97 E-value=15 Score=22.40 Aligned_cols=32 Identities=6% Similarity=-0.057 Sum_probs=20.6
Q ss_pred CHHHHHHHhCCCHHHHHhhcCCCCCCCCEEEE
Q 037542 71 NLSSVASRFGIETQAIIDVNGNNIRPFDTLFV 102 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N~~~l~~Gq~L~I 102 (129)
++..||+.|+++...|.+.=....+.|....+
T Consensus 18 sv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 18 EAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp EHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred cHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 68899999999987765542211334544444
No 43
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=43.96 E-value=18 Score=23.03 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.7
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHhhcC
Q 037542 66 LQPSENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~~N~ 91 (129)
...|-|+..||+..|++...|.+.++
T Consensus 55 L~~G~SyreIa~~tG~StaTIsRv~r 80 (107)
T 3frw_A 55 LTDKRTYLDISEKTGASTATISRVNR 80 (107)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCccHHHHHHHHH
Confidence 57899999999999999999988876
No 44
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=43.76 E-value=27 Score=19.63 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHh
Q 037542 68 PSENLSSVASRFGIETQAIID 88 (129)
Q Consensus 68 ~GDTl~~IA~~~~vs~~~l~~ 88 (129)
.|-|+..||+.+|++...+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~ 49 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQ 49 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHH
Confidence 578999999999999887665
No 45
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=40.73 E-value=13 Score=21.06 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=19.2
Q ss_pred CCHHHHHHHhCCCHHHHHhhcC
Q 037542 70 ENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~N~ 91 (129)
+++..||+.||++.++|.....
T Consensus 45 ~~l~~ia~~l~v~~~~l~~~~~ 66 (77)
T 2k9q_A 45 VKYIAFLRSKGVDLNALFDRII 66 (77)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHS
T ss_pred HHHHHHHHHhCcCHHHHhCccc
Confidence 5788999999999999988755
No 46
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=39.85 E-value=9 Score=25.45 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=11.2
Q ss_pred CCCCCCCEEEEcCCCC
Q 037542 92 NNIRPFDTLFVPVARL 107 (129)
Q Consensus 92 ~~l~~Gq~L~IP~~~~ 107 (129)
..=+.||+|.|-+...
T Consensus 94 gHC~~GmKl~I~V~~~ 109 (138)
T 1jer_A 94 THCSNGQKLSINVVAA 109 (138)
T ss_dssp TTGGGTCEEEEEEECC
T ss_pred CccccCCEEEEEEcCC
Confidence 3456799999876543
No 47
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=39.77 E-value=24 Score=21.76 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=15.3
Q ss_pred CHHHHHHHhCCCHHHHHhh
Q 037542 71 NLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~ 89 (129)
+...||++||++...+.++
T Consensus 45 s~~eLa~~lgVSr~tVr~a 63 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNA 63 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH
Confidence 6789999999988666544
No 48
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=39.66 E-value=29 Score=21.99 Aligned_cols=24 Identities=0% Similarity=0.246 Sum_probs=18.6
Q ss_pred ecCCC---CHHHHHHHhCCCHHHHHhh
Q 037542 66 LQPSE---NLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 66 V~~GD---Tl~~IA~~~~vs~~~l~~~ 89 (129)
.++|| +...||++||++...+.++
T Consensus 31 ~~~g~~Lps~~~La~~~~vSr~tvr~A 57 (125)
T 3neu_A 31 WKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125)
T ss_dssp SCTTCBCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 46677 5679999999988766655
No 49
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=38.92 E-value=15 Score=24.00 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.6
Q ss_pred ecCCCCHHHHHHHhCC-CHHHHHhh
Q 037542 66 LQPSENLSSVASRFGI-ETQAIIDV 89 (129)
Q Consensus 66 V~~GDTl~~IA~~~~v-s~~~l~~~ 89 (129)
+..|.+|..|++.+|+ +...|.+|
T Consensus 25 i~~G~sl~~i~~~~~~ps~~T~~~W 49 (140)
T 4dyq_A 25 LSSGESLLKVCKRPGMPDKSTVFRW 49 (140)
T ss_dssp HHTTCCHHHHHTSTTCCCHHHHHHH
T ss_pred HHCCCcHHHHHhcCCCCCHHHHHHH
Confidence 5689999999999999 89888887
No 50
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=38.88 E-value=31 Score=20.44 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=19.0
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
..+.|.+|+||...|++.|+.+
T Consensus 13 ~~~~~~~g~tlL~a~~~~gi~i 34 (95)
T 1frr_A 13 FTLDVPEGTTILDAAEEAGYDL 34 (95)
T ss_dssp EEEEECTTCCHHHHHHHTTCCC
T ss_pred EEEEeCCCCcHHHHHHHcCCCC
Confidence 5788999999999999988753
No 51
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=38.30 E-value=34 Score=19.19 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=19.7
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
-.|-+...||+.+|++...+...
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~ 51 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVH 51 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999998877644
No 52
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=38.17 E-value=30 Score=18.75 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.4
Q ss_pred EecCCCCHHHHHHHhCCCHHHHHhh
Q 037542 65 VLQPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 65 ~V~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
..+.| ++..+|++.|++...|-++
T Consensus 10 ~~~~g-s~~~~A~~lgis~~~vs~~ 33 (67)
T 2pij_A 10 LEEHG-TQSALAAALGVNQSAISQM 33 (67)
T ss_dssp HHHTC-CHHHHHHHHTSCHHHHHHH
T ss_pred HHHcC-CHHHHHHHHCcCHHHHHHH
Confidence 34668 9999999999999888776
No 53
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=37.99 E-value=31 Score=22.00 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=18.3
Q ss_pred ecCCC---CHHHHHHHhCCCHHHHHhh
Q 037542 66 LQPSE---NLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 66 V~~GD---Tl~~IA~~~~vs~~~l~~~ 89 (129)
.++|| +...+|++|||+...+.++
T Consensus 32 l~pG~~LPser~La~~~gVSr~tVReA 58 (134)
T 4ham_A 32 LQEGEKILSIREFASRIGVNPNTVSKA 58 (134)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHCCCHHHHHHH
Confidence 46777 4468999999988766655
No 54
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=37.92 E-value=30 Score=19.58 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=17.7
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
..| |...+|++.|++...|.+|
T Consensus 10 ~~g-sq~~lA~~lgvs~~~is~~ 31 (79)
T 3bd1_A 10 KLG-SVSALAASLGVRQSAISNW 31 (79)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHH
T ss_pred HhC-CHHHHHHHHCCCHHHHHHH
Confidence 457 8888888888888888777
No 55
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=37.76 E-value=26 Score=22.17 Aligned_cols=24 Identities=8% Similarity=0.214 Sum_probs=20.9
Q ss_pred ecCCCCHHHHHHHh-CCCHHHHHhh
Q 037542 66 LQPSENLSSVASRF-GIETQAIIDV 89 (129)
Q Consensus 66 V~~GDTl~~IA~~~-~vs~~~l~~~ 89 (129)
+..|.|...|++.| +++.++|..+
T Consensus 61 l~~G~s~eeIl~~yP~Lt~edI~aA 85 (106)
T 2ga1_A 61 RQQGAPDKELLANYPGLTAEDLSAA 85 (106)
T ss_dssp HHTTCCHHHHHHHSTTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHCCCCCHHHHHHH
Confidence 47799999999999 8999988754
No 56
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=37.57 E-value=23 Score=20.59 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHhCCCHHHHH-hhc
Q 037542 68 PSENLSSVASRFGIETQAII-DVN 90 (129)
Q Consensus 68 ~GDTl~~IA~~~~vs~~~l~-~~N 90 (129)
+++||...|+.+|+++++|. ++|
T Consensus 39 ~~~tL~~Aa~~~gid~~~ll~~Ln 62 (73)
T 2k5e_A 39 QNESLEQGANAHGLNVEDILRDLN 62 (73)
T ss_dssp GGSBHHHHHHHTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHcCCCHHHHHHHHH
Confidence 46899999999999998766 445
No 57
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=37.55 E-value=28 Score=21.32 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHhh
Q 037542 68 PSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 68 ~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
.|-|+..||+.+|++...+.++
T Consensus 19 ~~~ti~dlA~~~gVS~~TVsR~ 40 (93)
T 2l0k_A 19 TKKTVRVIAKEFGVSKSTVHKD 40 (93)
T ss_dssp HCCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHH
Confidence 3468999999999999887765
No 58
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=37.55 E-value=25 Score=18.75 Aligned_cols=23 Identities=4% Similarity=0.182 Sum_probs=19.1
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHh
Q 037542 66 LQPSENLSSVASRFGIETQAIID 88 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~ 88 (129)
+..|-+...||+..|++...+..
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~ 32 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVET 32 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHH
Confidence 35688999999999999887654
No 59
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=37.53 E-value=38 Score=20.08 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=25.0
Q ss_pred cCCC--CHHHHHHHhCCCHHHHHhhcC---CCCCCCCEEEEcC
Q 037542 67 QPSE--NLSSVASRFGIETQAIIDVNG---NNIRPFDTLFVPV 104 (129)
Q Consensus 67 ~~GD--Tl~~IA~~~~vs~~~l~~~N~---~~l~~Gq~L~IP~ 104 (129)
..|| |.-.||+++|++-.. +|. ...+.|+.-.+|.
T Consensus 25 ~~~~~~Ta~~IAkkLg~sK~~---vNr~LY~L~kkG~V~~~~~ 64 (75)
T 1sfu_A 25 NTNDYTTAISLSNRLKINKKK---INQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp CTTCEECHHHHHHHTTCCHHH---HHHHHHHHHHTTSEEEECC
T ss_pred CCCcchHHHHHHHHHCCCHHH---HHHHHHHHHHCCCEecCCC
Confidence 3455 899999999998865 344 3456677777764
No 60
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=37.35 E-value=38 Score=19.79 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHhh
Q 037542 68 PSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 68 ~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
.|-|+..||+.+|++...+...
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~ 58 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQI 58 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
Confidence 6789999999999999876653
No 61
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=37.19 E-value=10 Score=24.40 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=16.4
Q ss_pred CCHHHHHHHhCCCHHHHHh
Q 037542 70 ENLSSVASRFGIETQAIID 88 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~ 88 (129)
++|..||+.|||+++.|..
T Consensus 60 ~~l~~iA~~f~V~~~yl~~ 78 (123)
T 3qwg_A 60 ATMAALANFFRIKAAYFTD 78 (123)
T ss_dssp HHHHHHHHHTTSCTHHHHC
T ss_pred HHHHHHHHHhCCCHHHHcC
Confidence 6899999999999987764
No 62
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=37.14 E-value=31 Score=19.44 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=17.1
Q ss_pred CHHHHHHHhCCCHHHHHhh-cC
Q 037542 71 NLSSVASRFGIETQAIIDV-NG 91 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~-N~ 91 (129)
|+.+||++-|++...+-++ |+
T Consensus 2 T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 6789999999998887765 44
No 63
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=37.13 E-value=36 Score=19.73 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=19.7
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
..|-+...||+.+|++...+...
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~ 56 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVH 56 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 68999999999999998876543
No 64
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=37.12 E-value=34 Score=20.49 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.1
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
.++.|.+|+||...|++.|+.+
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi~i 37 (98)
T 1frd_A 16 TTIEIDEETTILDGAEENGIEL 37 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCCC
T ss_pred EEEEeCCCCcHHHHHHHcCCCc
Confidence 5788999999999999988753
No 65
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=36.86 E-value=36 Score=20.42 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=18.9
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
..+.+.+|+||...+++.|+.+
T Consensus 17 ~~~~~~~g~tlL~a~~~~gi~i 38 (98)
T 1jq4_A 17 LRFECRSDEDVITAALRQNIFL 38 (98)
T ss_dssp EEEEEESCCTHHHHHHHHTCCC
T ss_pred EEEEeCCCChHHHHHHHcCCCC
Confidence 5788899999999999988753
No 66
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=36.75 E-value=40 Score=19.16 Aligned_cols=21 Identities=19% Similarity=0.310 Sum_probs=18.2
Q ss_pred ecCCCCHHHHHHHhCCCHHHH
Q 037542 66 LQPSENLSSVASRFGIETQAI 86 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l 86 (129)
|+.|-|.-.+|..|+.+.+.-
T Consensus 15 ~~QGMTaGEVAA~f~w~Le~a 35 (68)
T 3i71_A 15 VRQGMTAGEVAAHFGWPLEKA 35 (68)
T ss_dssp CTTCBCHHHHHHHHTCCHHHH
T ss_pred HhccccHHHHHHHhCCcHHHH
Confidence 678999999999999988653
No 67
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=36.33 E-value=14 Score=21.24 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=17.5
Q ss_pred CCHHHHHHHhCCCHHHHHhh
Q 037542 70 ENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~ 89 (129)
++|..||+.||++.++|...
T Consensus 58 ~~l~~ia~~l~v~~~~l~~~ 77 (86)
T 2ofy_A 58 FTIAAVARVLDLSLDDVAAV 77 (86)
T ss_dssp HHHHHHHHHTTCCHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHhcc
Confidence 57999999999999998764
No 68
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=36.25 E-value=11 Score=24.65 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=16.4
Q ss_pred CCHHHHHHHhCCCHHHHHh
Q 037542 70 ENLSSVASRFGIETQAIID 88 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~ 88 (129)
|+|..||+.|||+++.|..
T Consensus 62 ~~l~~iA~~f~V~~~yl~~ 80 (135)
T 3r1f_A 62 ATMAALANFFRIKAAYFTD 80 (135)
T ss_dssp HHHHHHHHHHTSCTHHHHC
T ss_pred HHHHHHHHHhCCCHHHHcC
Confidence 6899999999999887763
No 69
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=35.97 E-value=21 Score=20.83 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=17.5
Q ss_pred CHHHHHHHhCCCHHHHHhhc
Q 037542 71 NLSSVASRFGIETQAIIDVN 90 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N 90 (129)
++..+|+.+|++...|..|=
T Consensus 7 ~i~e~A~~~gvs~~tlR~ye 26 (81)
T 2jml_A 7 RIRTIARMTGIREATLRAWE 26 (81)
T ss_dssp EHHHHHHTTSTTHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHH
Confidence 56789999999999999883
No 70
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=34.75 E-value=28 Score=19.46 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.9
Q ss_pred CHHHHHHHhCCCHHHHHhhcC
Q 037542 71 NLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N~ 91 (129)
|...+|+.+||+...|.+|=.
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~~ 24 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQE 24 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 456899999999999999944
No 71
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=34.72 E-value=25 Score=21.21 Aligned_cols=26 Identities=15% Similarity=0.538 Sum_probs=20.1
Q ss_pred ecCCC---CHHHHHHHhCCCHHHHHhhcC
Q 037542 66 LQPSE---NLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 66 V~~GD---Tl~~IA~~~~vs~~~l~~~N~ 91 (129)
+++|+ +...||++||++...+.++=.
T Consensus 29 l~~g~~lps~~eLa~~~~vSr~tvr~al~ 57 (102)
T 1v4r_A 29 LAPGDTLPSVADIRAQFGVAAKTVSRALA 57 (102)
T ss_dssp CCTTSBCCCHHHHHHHSSSCTTHHHHHTT
T ss_pred CCCcCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 45666 688999999998887776633
No 72
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=34.71 E-value=32 Score=21.09 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=19.5
Q ss_pred EEEEecCCCCHHHHHHHhCCCHH
Q 037542 62 VSYVLQPSENLSSVASRFGIETQ 84 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~~ 84 (129)
.+..+..|+||..+|.+.|+.+.
T Consensus 19 ~~v~~~~g~tLL~aa~~~gi~i~ 41 (108)
T 2bt6_A 19 LTTKGKIGDSLLDVVVQNNLDID 41 (108)
T ss_dssp EEEEEETTCBHHHHHHHTTCCCT
T ss_pred EEEEECCCChHHHHHHHcCCCCC
Confidence 46778999999999999998643
No 73
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=34.69 E-value=37 Score=20.54 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=18.9
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
.++.+.+|+||...|++.|+.+
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi~i 37 (103)
T 2wlb_A 16 IMIEGNEGDSILDLAHANNIDL 37 (103)
T ss_dssp EEEEECTTCBHHHHHHHTTCCC
T ss_pred EEEEECCCCHHHHHHHHcCCCc
Confidence 5778899999999999988753
No 74
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=33.84 E-value=24 Score=22.88 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=23.5
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHhhcC
Q 037542 66 LQPSENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~~N~ 91 (129)
+..|-|...||+..|++...|.+.++
T Consensus 72 L~~G~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 72 IKQGYTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp HHHTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 56799999999999999999988876
No 75
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=33.76 E-value=43 Score=19.63 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=19.0
Q ss_pred cCCCCHHHHHHHhCCCHHHHHh
Q 037542 67 QPSENLSSVASRFGIETQAIID 88 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~ 88 (129)
-.|-++..||+.+|++...+..
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~ 72 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKS 72 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 5688999999999999887654
No 76
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=33.54 E-value=35 Score=21.04 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=18.4
Q ss_pred CHHHHHHHhCCCHHHHHhhcC
Q 037542 71 NLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N~ 91 (129)
|+..+|+.+|++...|..|=.
T Consensus 4 ~i~e~A~~~gvs~~tLR~ye~ 24 (109)
T 1r8d_A 4 QVKQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp CHHHHHHHHSCCHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHH
Confidence 678899999999999998844
No 77
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=33.05 E-value=39 Score=19.75 Aligned_cols=23 Identities=17% Similarity=0.520 Sum_probs=18.9
Q ss_pred CCCHHHHHHHhCCCHHHHH-hhcC
Q 037542 69 SENLSSVASRFGIETQAII-DVNG 91 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~-~~N~ 91 (129)
++||...|+.+|+++++|. ++|.
T Consensus 38 ~~tLeeA~~~hgiD~d~ll~eLn~ 61 (76)
T 2k53_A 38 GESIEDACAVHGIDADKLVKELNE 61 (76)
T ss_dssp CSBHHHHHHHHTCCHHHHHHHHHH
T ss_pred cccHHHHHHHcCCCHHHHHHHHHH
Confidence 6899999999999998765 4553
No 78
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=32.73 E-value=17 Score=22.22 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.6
Q ss_pred CCCHHHHHHHhCCCHHHHHhhcC
Q 037542 69 SENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~~~N~ 91 (129)
-+++..||+.||+++++|.....
T Consensus 51 ~~~l~~la~~l~v~~~~l~~~~~ 73 (114)
T 3op9_A 51 IEKLIRLATYFHLSIDELVGYVQ 73 (114)
T ss_dssp HHHHHHHHHHHTCCHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCHHHHhcCCC
Confidence 36899999999999999987644
No 79
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=32.70 E-value=39 Score=19.14 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=17.3
Q ss_pred CHHHHHHHhCCCHHHHHhh
Q 037542 71 NLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~ 89 (129)
|+.+||++.|++...+-++
T Consensus 11 t~~diA~~aGVS~sTVSr~ 29 (67)
T 2l8n_A 11 TMKDVALKAKVSTATVSRA 29 (67)
T ss_dssp CHHHHHHHTTCCHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHH
Confidence 8999999999999888776
No 80
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=32.45 E-value=38 Score=19.84 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=18.9
Q ss_pred ecCC-CCHHHHHHHhCCCHHHHH
Q 037542 66 LQPS-ENLSSVASRFGIETQAII 87 (129)
Q Consensus 66 V~~G-DTl~~IA~~~~vs~~~l~ 87 (129)
|+.| -++...|+.|||.-..|.
T Consensus 26 Vr~g~mS~~~Aak~yGVP~sTL~ 48 (70)
T 2cob_A 26 VMSGKMSVSKAQSIYGIPHSTLE 48 (70)
T ss_dssp HHTTSSCHHHHHHHHTCCHHHHH
T ss_pred HHcCCccHHHHHHHhCCChHHHH
Confidence 5778 599999999999887776
No 81
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=31.96 E-value=46 Score=19.92 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=18.9
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
.++.|.+|+||...+++.|+.+
T Consensus 14 ~~~~~~~g~tlL~a~~~~gi~i 35 (97)
T 1a70_A 14 VEFQCPDDVYILDAAEEEGIDL 35 (97)
T ss_dssp EEEEEETTSCHHHHHHHTTCCC
T ss_pred EEEEeCCCCcHHHHHHHcCCCc
Confidence 5678899999999999988753
No 82
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=31.95 E-value=45 Score=22.48 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=20.5
Q ss_pred CCCHHHHHHHhCCCHHHHHhhcC
Q 037542 69 SENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~~~N~ 91 (129)
|=|+..||+..||+...|.+|-.
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 66999999999999999999843
No 83
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=31.81 E-value=28 Score=21.77 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=18.4
Q ss_pred cCCCCHH-HHHHHhCCCHHHHHhh
Q 037542 67 QPSENLS-SVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~-~IA~~~~vs~~~l~~~ 89 (129)
..|.+.. .||+.|||+...|..|
T Consensus 22 ~~g~~~~~~~A~~~gvs~stl~~~ 45 (131)
T 1hlv_A 22 ENPDLRKGEIARRFNIPPSTLSTI 45 (131)
T ss_dssp HCTTSCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCcHHHHHHHhCCCHHHHHHH
Confidence 4566654 9999999999888776
No 84
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=31.80 E-value=39 Score=20.78 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=18.6
Q ss_pred CHHHHHHHhCCCHHHHHhhcC
Q 037542 71 NLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N~ 91 (129)
|+..+|+.+|++...|.-|=.
T Consensus 3 ~i~e~A~~~gvs~~tLR~ye~ 23 (108)
T 2vz4_A 3 SVGQVAGFAGVTVRTLHHYDD 23 (108)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 678899999999999998855
No 85
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=31.76 E-value=40 Score=20.49 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=18.8
Q ss_pred EEEEecCCCCHHHHHHHhCCC
Q 037542 62 VSYVLQPSENLSSVASRFGIE 82 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs 82 (129)
.++.|..|+||...|++.|+.
T Consensus 13 ~~~~~~~g~tlLeaa~~~gi~ 33 (106)
T 1xlq_A 13 RELDVADGVSLMQAAVSNGIY 33 (106)
T ss_dssp EEEECCTTCBHHHHHHHTTCT
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 577899999999999999986
No 86
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=31.48 E-value=20 Score=21.69 Aligned_cols=20 Identities=5% Similarity=0.253 Sum_probs=17.5
Q ss_pred CCHHHHHHHhCCCHHHHHhh
Q 037542 70 ENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~ 89 (129)
+++..||+.||+++++|...
T Consensus 71 ~~l~~ia~~l~v~~~~l~~~ 90 (99)
T 3g5g_A 71 KSLELIMKGLEVSDVVFFEM 90 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHhcc
Confidence 58999999999999998764
No 87
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=31.41 E-value=44 Score=19.85 Aligned_cols=21 Identities=10% Similarity=0.128 Sum_probs=18.4
Q ss_pred EEEEecCCCCHHHHHHHhCCC
Q 037542 62 VSYVLQPSENLSSVASRFGIE 82 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs 82 (129)
.++.+.+|+||...|++.|+.
T Consensus 12 ~~~~~~~g~tlL~a~~~~gi~ 32 (94)
T 1awd_A 12 ETIECPEDTYILDAAEEAGLD 32 (94)
T ss_dssp EEEECCTTSCHHHHHHHTTCC
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 568899999999999998875
No 88
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=31.12 E-value=50 Score=17.34 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=18.3
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
+.|=|...+|++.|++...|.++
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~ 34 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGI 34 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 45678888888888888888777
No 89
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=31.12 E-value=48 Score=19.83 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=19.0
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
..+.+..|+||...+++.|+.+
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi~i 37 (98)
T 1czp_A 16 HEIEVPDDEYILDAAEEQGYDL 37 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCCC
T ss_pred EEEEeCCCCCHHHHHHHcCCCc
Confidence 5778999999999999988753
No 90
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=30.68 E-value=40 Score=20.81 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.6
Q ss_pred EEEEecCCCCHHHHHHHhCCC
Q 037542 62 VSYVLQPSENLSSVASRFGIE 82 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs 82 (129)
.++.|..|+||...|++.|+.
T Consensus 17 ~~v~~~~g~tlL~aa~~~Gi~ 37 (113)
T 3ah7_A 17 LTVEVKPGTNILELAHDHHIE 37 (113)
T ss_dssp EEEECCTTCBHHHHHHHTTCC
T ss_pred eEEEECCCCcHHHHHHHcCCC
Confidence 578899999999999998875
No 91
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=29.87 E-value=49 Score=19.85 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=18.8
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
.++.|.+|+||...+++.|+.+
T Consensus 14 ~~~~~~~g~tlL~a~~~~gi~i 35 (98)
T 1iue_A 14 KKIECNEDEYILDASERQNVEL 35 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCCC
T ss_pred EEEEeCCCCcHHHHHHHcCCCC
Confidence 5678899999999999988753
No 92
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=29.79 E-value=38 Score=20.63 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=16.0
Q ss_pred CHHHHHHHhCCCHHHHHhhc
Q 037542 71 NLSSVASRFGIETQAIIDVN 90 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N 90 (129)
-+..+|+.||+++++|..-.
T Consensus 6 I~~~Va~~f~i~~~dl~s~~ 25 (94)
T 1j1v_A 6 IQKTVAEYYKIKVADLLSKR 25 (94)
T ss_dssp HHHHHHHHTTCCHHHHHSCC
T ss_pred HHHHHHHHhCCCHHHHhCCC
Confidence 35678999999999997543
No 93
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=29.67 E-value=44 Score=20.52 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.5
Q ss_pred EEEecCCCCHHHHHHHhCCC
Q 037542 63 SYVLQPSENLSSVASRFGIE 82 (129)
Q Consensus 63 ~y~V~~GDTl~~IA~~~~vs 82 (129)
+..+..|+||...|.+.|+.
T Consensus 19 ~~~~~~g~tlL~aa~~~gi~ 38 (109)
T 2y5c_A 19 PVSGRVGDNVLHLAQRHGVD 38 (109)
T ss_dssp EEEEETTCBHHHHHHHTTCC
T ss_pred EEEECCCCcHHHHHHHcCCC
Confidence 56789999999999998875
No 94
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=29.48 E-value=39 Score=20.57 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=18.7
Q ss_pred EEEEecCCCCHHHHHHHhCCC
Q 037542 62 VSYVLQPSENLSSVASRFGIE 82 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs 82 (129)
.++.+..|+||...|++.|+.
T Consensus 13 ~~~~~~~g~tlL~aa~~~gi~ 33 (106)
T 1uwm_A 13 HEVEAKPGLTVMEAARDNGVP 33 (106)
T ss_dssp EEEECCTTSBHHHHHHTTTCT
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 578899999999999998876
No 95
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=29.32 E-value=52 Score=18.55 Aligned_cols=19 Identities=16% Similarity=0.597 Sum_probs=15.1
Q ss_pred CHHHHHHHhCCCHHHHHhh
Q 037542 71 NLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~ 89 (129)
-+..+|.+|||+-+++..+
T Consensus 27 dI~~~a~kygV~kdeV~~~ 45 (59)
T 2xvc_A 27 DIEHFSKVYGVEKQEVVKL 45 (59)
T ss_dssp EHHHHHHHHCCCHHHHHHH
T ss_pred eHHHHHHHhCCCHHHHHHH
Confidence 3678999999998876654
No 96
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=29.06 E-value=56 Score=20.40 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=18.9
Q ss_pred cCCCCHHHHHHHhCCCHHHHHh
Q 037542 67 QPSENLSSVASRFGIETQAIID 88 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~ 88 (129)
-.|-|...||+.+|++...+..
T Consensus 36 ~~g~s~~EIA~~lgiS~~tV~~ 57 (113)
T 1s7o_A 36 ADDYSLAEIADEFGVSRQAVYD 57 (113)
T ss_dssp HTCCCHHHHHHHHTCCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 4689999999999999887654
No 97
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=29.05 E-value=44 Score=21.52 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=18.4
Q ss_pred CHHHHHHHhCCCHHHHHhhcC
Q 037542 71 NLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N~ 91 (129)
++..+|+.+|++...|.-|=.
T Consensus 2 ~I~e~A~~~gvs~~tLR~ye~ 22 (135)
T 1q06_A 2 NISDVAKITGLTSKAIRFYEE 22 (135)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 577899999999999998854
No 98
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=28.71 E-value=56 Score=20.68 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=18.0
Q ss_pred ecCCC---CHHHHHHHhCCCHHHHHhh
Q 037542 66 LQPSE---NLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 66 V~~GD---Tl~~IA~~~~vs~~~l~~~ 89 (129)
.++|| +...+|++||++...+.++
T Consensus 29 ~~~G~~lPse~~La~~~~vSr~tvr~A 55 (126)
T 3by6_A 29 LSANDQLPSVRETALQEKINPNTVAKA 55 (126)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 35555 6689999999988776654
No 99
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=28.45 E-value=58 Score=17.85 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=14.2
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
+.|=|...+|++.|++...|.++
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~ 40 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAM 40 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 34556666666666666666555
No 100
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=28.36 E-value=50 Score=20.30 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=19.0
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
.++.+.+|+||...|++.|+.+
T Consensus 17 ~~~~~~~g~tlL~a~~~~gi~i 38 (111)
T 1i7h_A 17 AVLEANSGETILDAALRNGIEI 38 (111)
T ss_dssp EEEECCTTCBHHHHHHHTTCCC
T ss_pred eEEEeCCCCcHHHHHHHcCCCC
Confidence 5788999999999999988753
No 101
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=28.09 E-value=53 Score=21.92 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=19.7
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
..|.++..||+.+|++...+.++
T Consensus 156 ~~G~s~~~Ia~~l~is~~tv~r~ 178 (183)
T 1gdt_A 156 QQGLGASHISKTMNIARSTVYKV 178 (183)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999988877654
No 102
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=27.91 E-value=60 Score=17.66 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=20.3
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHhhc
Q 037542 66 LQPSENLSSVASRFGIETQAIIDVN 90 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~~N 90 (129)
.+.|=|...+|++.|++...|.+|=
T Consensus 20 ~~~g~s~~~lA~~~gis~~~i~~~e 44 (76)
T 3bs3_A 20 AEKQRTNRWLAEQMGKSENTISRWC 44 (76)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3567788999999999988888773
No 103
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=27.78 E-value=26 Score=20.29 Aligned_cols=40 Identities=10% Similarity=-0.085 Sum_probs=29.2
Q ss_pred cHHHHHHhhCCCCCCHHHHHHhCCCCCCCCCCCCCEEEECC
Q 037542 4 TFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPV 44 (129)
Q Consensus 4 Tl~~IA~~~~~~lts~~~l~~~N~~~~~~~l~~Gq~L~IP~ 44 (129)
|+.+.|.-+++|-.++..|...|+.. +-.+..|..++|..
T Consensus 18 Ti~EaAeylgIg~~~l~~L~~~~~~~-~~~~~iG~~~lI~r 57 (70)
T 1y6u_A 18 TIEEASKYFRIGENKLRRLAEENKNA-NWLIMNGNRIQIKR 57 (70)
T ss_dssp EHHHHHHHTCSCHHHHHHHHHHCTTC-SSEEEETTEEEEES
T ss_pred CHHHHHHHHCcCHHHHHHHHHcCCCC-CcEEEeCCEEEEEH
Confidence 67788988999767777777776331 34578899998874
No 104
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=27.77 E-value=63 Score=19.20 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=19.7
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
-.|-|...||+..|++...+...
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~ 62 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNY 62 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 78999999999999998776543
No 105
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=27.68 E-value=39 Score=18.93 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=14.0
Q ss_pred HHHHHHHhCCCHHHHHhh
Q 037542 72 LSSVASRFGIETQAIIDV 89 (129)
Q Consensus 72 l~~IA~~~~vs~~~l~~~ 89 (129)
|-.-|++.|++.++|.++
T Consensus 18 LI~~Ak~lGlsleEIref 35 (57)
T 1b0n_B 18 LMVEAKEANISPEEIRKY 35 (57)
T ss_dssp HHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 344578899999998876
No 106
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=27.26 E-value=32 Score=17.64 Aligned_cols=20 Identities=5% Similarity=0.157 Sum_probs=16.3
Q ss_pred CHHHHHHHhCCCHHHHHhhc
Q 037542 71 NLSSVASRFGIETQAIIDVN 90 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N 90 (129)
+++.+|+.+|++.++|.+.-
T Consensus 4 rv~~lAkel~~~~k~l~~~l 23 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQF 23 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHH
Confidence 46789999999998887653
No 107
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=27.19 E-value=49 Score=21.69 Aligned_cols=21 Identities=19% Similarity=0.071 Sum_probs=18.7
Q ss_pred CHHHHHHHhCCCHHHHHhhcC
Q 037542 71 NLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N~ 91 (129)
++..+|+.+|++...|.-|=.
T Consensus 6 tI~evA~~~Gvs~~tLR~ye~ 26 (146)
T 3hh0_A 6 LISEFASVGDVTVRALRYYDK 26 (146)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHH
Confidence 678999999999999998855
No 108
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=27.15 E-value=61 Score=19.80 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.4
Q ss_pred EEEEecCCCCHHHHHHHhCCC
Q 037542 62 VSYVLQPSENLSSVASRFGIE 82 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs 82 (129)
.+..+..|+||...+++.|+.
T Consensus 13 ~~~~~~~g~tll~a~~~~gi~ 33 (104)
T 3lxf_A 13 TEIQAEPGLSLMEALRDAGID 33 (104)
T ss_dssp EEEECCTTSBHHHHHHHTTCT
T ss_pred EEEEECCCChHHHHHHHcCCC
Confidence 467889999999999998876
No 109
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=27.13 E-value=42 Score=20.03 Aligned_cols=19 Identities=5% Similarity=0.158 Sum_probs=16.0
Q ss_pred CHHHHHHHhCCCHHHHHhh
Q 037542 71 NLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~ 89 (129)
+|..+|+.|+++.+++.++
T Consensus 32 sl~~La~ll~ls~~~vE~~ 50 (84)
T 1ufm_A 32 TFEELGALLEIPAAKAEKI 50 (84)
T ss_dssp EHHHHHHHTTSCHHHHHHH
T ss_pred eHHHHHHHHCcCHHHHHHH
Confidence 6889999999999886654
No 110
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=27.12 E-value=63 Score=18.22 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=18.9
Q ss_pred EEEecCCCCHHHHHHHhCCCHHHHHhh
Q 037542 63 SYVLQPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 63 ~y~V~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
.|..+.|=|...+|++.|++...|.++
T Consensus 17 ~~R~~~gltq~elA~~~gis~~~is~~ 43 (78)
T 3qq6_A 17 QYRKEKGYSLSELAEKAGVAKSYLSSI 43 (78)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 344566777777777777777777666
No 111
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=27.10 E-value=63 Score=17.24 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=16.2
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
+.|=|...+|++.|++...|.++
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~ 36 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLI 36 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHH
Confidence 34567777777777777777666
No 112
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=27.09 E-value=45 Score=20.69 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=17.9
Q ss_pred CCCHHHHHHHhCCCHHHHHhhcC
Q 037542 69 SENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~~~N~ 91 (129)
.+-+..||+.||++.++|..-..
T Consensus 8 ~~I~~~Va~~f~v~~~dl~s~~R 30 (101)
T 3pvv_A 8 ATIMAATAEYFDTTVEELRGPGK 30 (101)
T ss_dssp HHHHHHHHHHTTCCHHHHHSSCC
T ss_pred HHHHHHHHHHHCCCHHHHhCCCC
Confidence 34567889999999999976543
No 113
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=27.08 E-value=28 Score=20.26 Aligned_cols=41 Identities=10% Similarity=0.222 Sum_probs=30.4
Q ss_pred EEEEecCCCCHHHHHHHhCCCHHHH-HhhcC-----CCCCCCCEEEE
Q 037542 62 VSYVLQPSENLSSVASRFGIETQAI-IDVNG-----NNIRPFDTLFV 102 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~~~l-~~~N~-----~~l~~Gq~L~I 102 (129)
..+.+..|-|+..+-+++|++.+.+ ...|. +.+..|+.|.|
T Consensus 13 ~~~ev~~g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~~l~GD~VeI 59 (74)
T 2l32_A 13 SEVAVDDDGTYADLVRAVDLSPHEVTVLVDGRPVPEDQSVEVDRVKV 59 (74)
T ss_dssp EEEECSTTCSHHHHHHTTCCCSSCCCEECCCCCCCTTSSSCCCCEEE
T ss_pred eeEEcCCCCcHHHHHHHcCCCcceEEEEECCEECCHHHCCCCCEEEE
Confidence 3578899999999999999977554 44466 44445877765
No 114
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=27.07 E-value=28 Score=21.39 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=17.1
Q ss_pred CCHHHHHHHhCCCHHHHHhh
Q 037542 70 ENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~ 89 (129)
|++..||+.||++.+.+...
T Consensus 57 ~~~~kla~~lgvs~~~ll~~ 76 (104)
T 3trb_A 57 DTALRLAKFFGTTPEFWLNL 76 (104)
T ss_dssp HHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHhCC
Confidence 68899999999999887654
No 115
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=27.06 E-value=42 Score=19.71 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=13.7
Q ss_pred CHHHHHHHhCCCHHHHH
Q 037542 71 NLSSVASRFGIETQAII 87 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~ 87 (129)
|+..||+.||+|...+.
T Consensus 26 sv~EIa~~lgvS~~TVr 42 (77)
T 2jt1_A 26 KTRDIADAAGLSIYQVR 42 (77)
T ss_dssp EHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHCCCHHHHH
Confidence 68899999999875533
No 116
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=26.97 E-value=57 Score=20.50 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=19.8
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHh
Q 037542 66 LQPSENLSSVASRFGIETQAIID 88 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~ 88 (129)
.-.|-++..||+.+|++...+..
T Consensus 121 ~~~g~s~~EIA~~lgis~~tV~~ 143 (164)
T 3mzy_A 121 LIRGYSYREIATILSKNLKSIDN 143 (164)
T ss_dssp HTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHH
Confidence 45799999999999999988754
No 117
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=26.32 E-value=42 Score=23.53 Aligned_cols=18 Identities=11% Similarity=0.303 Sum_probs=15.6
Q ss_pred CHHHHHHHhCCCHHHHHh
Q 037542 71 NLSSVASRFGIETQAIID 88 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~ 88 (129)
.|..||+.|||.|+.+..
T Consensus 172 yL~EIA~ey~V~w~~~~~ 189 (193)
T 3ggy_A 172 YLKEIAKTYDVPYSKLEN 189 (193)
T ss_dssp HHHHHHHHTTCCHHHHHT
T ss_pred HHHHHHHHcCCCCCCccc
Confidence 688999999999987754
No 118
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=26.11 E-value=71 Score=16.78 Aligned_cols=23 Identities=13% Similarity=0.149 Sum_probs=19.1
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
+.|=|...+|++.|++...|.++
T Consensus 16 ~~g~s~~~lA~~~gis~~~i~~~ 38 (68)
T 2r1j_L 16 KLKIRQAALGKMVGVSNVAISQW 38 (68)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHH
Confidence 45678889999999998888877
No 119
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=26.04 E-value=41 Score=20.43 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=18.8
Q ss_pred EEEEecCCCCHHHHHHHhCCC
Q 037542 62 VSYVLQPSENLSSVASRFGIE 82 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs 82 (129)
.+..+..|+||...|++.|+.
T Consensus 13 ~~~~~~~g~tlL~aa~~~gi~ 33 (105)
T 1b9r_A 13 YAVDAQDGQSLMEVATQNGVP 33 (105)
T ss_dssp EEEECCTTCCTTHHHHHHTCC
T ss_pred EEEEECCCChHHHHHHHcCCC
Confidence 578899999999999999886
No 120
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=25.80 E-value=70 Score=16.94 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=15.4
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
+.|=|...+|++.|++...|.+|
T Consensus 12 ~~glsq~~lA~~~gis~~~i~~~ 34 (69)
T 1r69_A 12 QLGLNQAELAQKVGTTQQSIEQL 34 (69)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 34556677777777777776666
No 121
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=25.59 E-value=61 Score=22.15 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.6
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
..|.++..||+.+|++...+.++
T Consensus 173 ~~G~s~~~Ia~~l~is~~tv~r~ 195 (209)
T 2r0q_C 173 EEGQAISKIAKEVNITRQTVYRI 195 (209)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 47999999999999999888876
No 122
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.54 E-value=55 Score=21.45 Aligned_cols=21 Identities=14% Similarity=0.082 Sum_probs=18.8
Q ss_pred CHHHHHHHhCCCHHHHHhhcC
Q 037542 71 NLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N~ 91 (129)
++..+|+.+|++...|.-|=.
T Consensus 18 ~I~evA~~~gvs~~tLR~Ye~ 38 (148)
T 3gpv_A 18 TIGQVAKMQHLTISQIRYYDK 38 (148)
T ss_dssp CHHHHHHHTTCCHHHHHHHHH
T ss_pred eHHHHHHHHCcCHHHHHHHHH
Confidence 788999999999999998854
No 123
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=25.29 E-value=55 Score=21.34 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=18.5
Q ss_pred CHHHHHHHhCCCHHHHHhhcC
Q 037542 71 NLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N~ 91 (129)
++..+|+.+|++...|.-|=.
T Consensus 4 ~I~e~A~~~gvs~~tLR~Ye~ 24 (142)
T 3gp4_A 4 NIKEASEKSGVSADTIRYYER 24 (142)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHH
Confidence 678899999999999998855
No 124
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=25.26 E-value=73 Score=17.14 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=19.7
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHhh
Q 037542 66 LQPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
...|=|...+|++.|++...|.++
T Consensus 23 ~~~g~s~~~lA~~~gis~~~i~~~ 46 (74)
T 1y7y_A 23 TAKGLSQETLAFLSGLDRSYVGGV 46 (74)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 356778889999999998888777
No 125
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=25.25 E-value=73 Score=19.75 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=18.8
Q ss_pred cCCCCHHHHHHHhCCCHHHHHh
Q 037542 67 QPSENLSSVASRFGIETQAIID 88 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~ 88 (129)
-.|-|...||+.+|++...+..
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~~ 60 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVYD 60 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 4688999999999999887654
No 126
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=25.17 E-value=76 Score=18.42 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=16.0
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
+.|=|...+|++.|++...|.+|
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~ 42 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTW 42 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 44667777777777777777666
No 127
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=25.16 E-value=72 Score=17.36 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=16.4
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
+.|=|...+|++.|++...|.++
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~ 43 (77)
T 2b5a_A 21 QKGVSQEELADLAGLHRTYISEV 43 (77)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHH
Confidence 45667777777777777777666
No 128
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=25.13 E-value=13 Score=22.30 Aligned_cols=41 Identities=7% Similarity=0.065 Sum_probs=32.8
Q ss_pred EEEecCCCCHHHHHHHhCCCHHHHHhhcC-------CCCCCCCEEEEc
Q 037542 63 SYVLQPSENLSSVASRFGIETQAIIDVNG-------NNIRPFDTLFVP 103 (129)
Q Consensus 63 ~y~V~~GDTl~~IA~~~~vs~~~l~~~N~-------~~l~~Gq~L~IP 103 (129)
.|.+-.-|-...+-++|++...+|-+.-. -.+++||++.|-
T Consensus 13 kH~iLs~eEk~~lL~~y~i~~~qLP~I~~~DPvar~~G~k~GdVvkI~ 60 (77)
T 1eik_A 13 EHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKII 60 (77)
T ss_dssp EEEEECHHHHHHHHHHTTCCTTTSCCCBTTSHHHHGGGCCTTCEEEEE
T ss_pred CEEEcCHHHHHHHHHHcCCCHHHCCeeeCcCHhhHHhCCCCCCEEEEE
Confidence 67888778888888999998877665544 479999999984
No 129
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=25.07 E-value=31 Score=21.13 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=18.3
Q ss_pred CCHHHHHHHhCCCHHHHHhhcC
Q 037542 70 ENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~N~ 91 (129)
+++..||+.||+++++|.....
T Consensus 71 ~~l~~la~~l~v~~~~l~~~~~ 92 (117)
T 3f52_A 71 ELLASVCHALGASVADVLIEAA 92 (117)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHhccc
Confidence 6899999999999988776543
No 130
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=25.05 E-value=15 Score=22.34 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=31.3
Q ss_pred EEEecCCCCHHHHHHHhCCCHHHHHhhcC-------CCCCCCCEEEEc
Q 037542 63 SYVLQPSENLSSVASRFGIETQAIIDVNG-------NNIRPFDTLFVP 103 (129)
Q Consensus 63 ~y~V~~GDTl~~IA~~~~vs~~~l~~~N~-------~~l~~Gq~L~IP 103 (129)
.|.+-.-|-...+-++|+++.++|=..-. -.+++||++.|-
T Consensus 19 kH~vLs~eE~~~ll~~y~i~~~qLP~I~~~DPva~~~g~k~GdVvkI~ 66 (84)
T 4ayb_H 19 KHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRII 66 (84)
T ss_dssp EEEECCHHHHHHHHHHHTCCGGGSCCEESSSHHHHHHTCCTTCEEEEE
T ss_pred CeEECCHHHHHHHHHHhcCCHhHCCeecccCHhHHhhCCCCCCEEEEE
Confidence 68887777778888899998766544433 479999999885
No 131
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=24.96 E-value=36 Score=20.26 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=18.3
Q ss_pred EEEEecCCCCHHHHHHHhCCC
Q 037542 62 VSYVLQPSENLSSVASRFGIE 82 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs 82 (129)
.++.+.+|+||...+++.|+.
T Consensus 12 ~~~~~~~g~tll~a~~~~gi~ 32 (93)
T 1l5p_A 12 KQLKFEDDQTLFTVLTEAGLM 32 (93)
T ss_dssp EEEECCTTEEHHHHHHTTTSS
T ss_pred EEEEECCCChHHHHHHHcCCC
Confidence 467889999999999998875
No 132
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=24.53 E-value=66 Score=18.54 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=17.4
Q ss_pred CHHHHHHHhCCCHHHHHhh
Q 037542 71 NLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~ 89 (129)
+...+|+..||+...+.+|
T Consensus 12 ~~~~lA~~lGVs~~aVs~W 30 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQW 30 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHH
Confidence 3789999999999999999
No 133
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=24.28 E-value=57 Score=20.99 Aligned_cols=20 Identities=5% Similarity=0.160 Sum_probs=15.8
Q ss_pred CCCHHHHHHHhCCCHHHHHh
Q 037542 69 SENLSSVASRFGIETQAIID 88 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~~ 88 (129)
.+-.-.||++|+++...+.+
T Consensus 48 K~LYp~IA~k~~TT~s~VEr 67 (120)
T 1fc3_A 48 KVLYPDIAKKYNTTASRVER 67 (120)
T ss_dssp TTHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHH
Confidence 35677899999999977654
No 134
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=23.61 E-value=57 Score=18.20 Aligned_cols=19 Identities=5% Similarity=0.211 Sum_probs=15.1
Q ss_pred CHHHHHHHhCCCHHHHHhh
Q 037542 71 NLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~ 89 (129)
++..||+++|++...+.+.
T Consensus 27 s~~eLA~~lglsr~tv~~~ 45 (67)
T 2heo_A 27 AIFQLVKKCQVPKKTLNQV 45 (67)
T ss_dssp EHHHHHHHHCSCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH
Confidence 7889999999987765543
No 135
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=22.94 E-value=71 Score=18.88 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=15.9
Q ss_pred CCHHHHHHHhCCCHHHHHhh
Q 037542 70 ENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~ 89 (129)
=++..||+.+|++...|.+.
T Consensus 20 ~~~~~lA~~~~~S~~~l~r~ 39 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSIM 39 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 38899999999988776543
No 136
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=22.93 E-value=92 Score=17.62 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=20.7
Q ss_pred EecCCCCHHHHHHHhCCCHHHHHhh
Q 037542 65 VLQPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 65 ~V~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
..+.|=|...+|++.|++...|.++
T Consensus 27 r~~~glsq~elA~~~gis~~~is~~ 51 (83)
T 2a6c_A 27 LRNSGLTQFKAAELLGVTQPRVSDL 51 (83)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 3456889999999999998888876
No 137
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=22.75 E-value=69 Score=17.37 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=18.0
Q ss_pred CCHHHHHHHhCCCHHHHHhh
Q 037542 70 ENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~ 89 (129)
-|-..+|++.|++...|.+|
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~w 30 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQW 30 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHC
T ss_pred CCHHHHHHHhCCCHHHHHHH
Confidence 37789999999999999988
No 138
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=22.71 E-value=64 Score=17.60 Aligned_cols=26 Identities=0% Similarity=-0.038 Sum_probs=19.9
Q ss_pred EecCCCCHHHHHHHhCCCHHHHHhhc
Q 037542 65 VLQPSENLSSVASRFGIETQAIIDVN 90 (129)
Q Consensus 65 ~V~~GDTl~~IA~~~~vs~~~l~~~N 90 (129)
..+.|=|...+|++.|++...|.+|=
T Consensus 17 r~~~glsq~~lA~~~gis~~~is~~e 42 (73)
T 3omt_A 17 LAEKGKTNLWLTETLDKNKTTVSKWC 42 (73)
T ss_dssp HHHHTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 33567788888888888888887773
No 139
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=22.40 E-value=55 Score=19.13 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=19.7
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
-.|-+...||+.+|++...+...
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~ 64 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTH 64 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 67999999999999998876643
No 140
>2zp2_A Kinase A inhibitor; KIPI, histidine kinase inhibitor, ATP-binding, nucleotide- binding, protein kinase inhibitor, sporulation; 3.01A {Bacillus subtilis}
Probab=22.35 E-value=1.3e+02 Score=19.93 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=31.0
Q ss_pred EEEecCCCCHHHHHHHhCCCHHHHHhhcC--------CCCCCCCEEEEcCC
Q 037542 63 SYVLQPSENLSSVASRFGIETQAIIDVNG--------NNIRPFDTLFVPVA 105 (129)
Q Consensus 63 ~y~V~~GDTl~~IA~~~~vs~~~l~~~N~--------~~l~~Gq~L~IP~~ 105 (129)
.|-=.-|..|..||+..|++.+++.+.=- -...+|.....++.
T Consensus 8 ~Y~ge~g~DL~~vA~~~gls~~evi~~h~~~~y~V~~lGF~PGfpyL~~ld 58 (141)
T 2zp2_A 8 CYGGEFGPDLEEVAKINQLSPEEVIDIHTNGEYVVYMLGFAPGFPFLGGMS 58 (141)
T ss_dssp EESTTTCTTHHHHHHHTTCCHHHHHHHHTTCCEEEECCC--CCCCEEECCC
T ss_pred EcCCCCCCCHHHHHHHhCcCHHHHHHHHhCCCeEEEEEcCccCCceecCCC
Confidence 44445688999999999999999998855 34677766665553
No 141
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=22.30 E-value=91 Score=16.82 Aligned_cols=23 Identities=13% Similarity=0.149 Sum_probs=18.2
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
+.|=|...+|++.|++...|.++
T Consensus 16 ~~gls~~~lA~~~gis~~~i~~~ 38 (76)
T 1adr_A 16 KLKIRQAALGKMVGVSNVAISQW 38 (76)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 44668888888888888888777
No 142
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=22.30 E-value=74 Score=18.99 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=16.0
Q ss_pred CCHHHHHHHhCCCHHHHHhh
Q 037542 70 ENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~ 89 (129)
=++..||+.+|++...|.+.
T Consensus 19 ~~~~~lA~~~~~s~~~l~r~ 38 (108)
T 3mn2_A 19 ITIEKLTALTGISSRGIFKA 38 (108)
T ss_dssp CCHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHH
Confidence 48899999999988776653
No 143
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=22.28 E-value=49 Score=22.21 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=29.7
Q ss_pred CHHHHHHHhCCCHHHHHhhcC----CCCCCCCEEEEcCCCC
Q 037542 71 NLSSVASRFGIETQAIIDVNG----NNIRPFDTLFVPVARL 107 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N~----~~l~~Gq~L~IP~~~~ 107 (129)
|+..+|+..||+...+.++=. -.++.|....||....
T Consensus 33 Tv~EVAe~LgVs~srV~~LIr~G~L~AVr~Gr~~rVP~~f~ 73 (148)
T 2kfs_A 33 DLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFF 73 (148)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHTTSCCCEEETTEEEEEGGGB
T ss_pred cHHHHHHHhCCCHHHHHHHHHCCCceEEEECCEEEecHHHh
Confidence 678999999999988877743 5677788999997653
No 144
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=22.05 E-value=68 Score=21.18 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.3
Q ss_pred CCHHHHHHHhCCCHHHHHhhcC
Q 037542 70 ENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~N~ 91 (129)
=++..+|+.+|++...|.-|-.
T Consensus 12 ~~i~e~A~~~gvs~~TLR~ye~ 33 (154)
T 2zhg_A 12 LTPGEVAKRSGVAVSALHFYES 33 (154)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH
Confidence 3788999999999999998854
No 145
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=22.05 E-value=84 Score=19.17 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHhh
Q 037542 68 PSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 68 ~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
.|-|+..||+.+|++...+...
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~ 59 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQI 59 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHH
Confidence 5679999999999998776543
No 146
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=21.99 E-value=45 Score=26.48 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=20.8
Q ss_pred cCCCCHHHHHHHhCCCHH----HHHhhcC
Q 037542 67 QPSENLSSVASRFGIETQ----AIIDVNG 91 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~----~l~~~N~ 91 (129)
.+.|||..+|+++|++.+ .|.++|.
T Consensus 442 ~~~~tl~ela~~~gi~~~~l~~tv~~yn~ 470 (571)
T 1y0p_A 442 PTADSLVKLGKMEGIDGKALTETVARYNS 470 (571)
T ss_dssp CEESSHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 468999999999999876 4667786
No 147
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=21.80 E-value=81 Score=18.51 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=12.8
Q ss_pred CHHHHHHHhCCCHHH
Q 037542 71 NLSSVASRFGIETQA 85 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~ 85 (129)
.|..+|..|+++.++
T Consensus 23 ~LedLA~~F~l~t~~ 37 (72)
T 1wi9_A 23 LLEDLAFQMGLRTQD 37 (72)
T ss_dssp CHHHHHHHHCSCHHH
T ss_pred eHHHHHHHhCCChHH
Confidence 688999999997755
No 148
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=21.73 E-value=80 Score=17.92 Aligned_cols=20 Identities=5% Similarity=0.029 Sum_probs=16.0
Q ss_pred CCHHHHHHHhCCCHHHHHhh
Q 037542 70 ENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~ 89 (129)
=|...||+.+|++...+.+.
T Consensus 15 ~s~~eLa~~lgvs~~tv~r~ 34 (81)
T 2htj_A 15 GKTAEIAEALAVTDYQARYY 34 (81)
T ss_dssp CCHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 48999999999988765543
No 149
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=21.59 E-value=92 Score=17.32 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=14.8
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
+.|=|...+|++.|++...|.++
T Consensus 22 ~~glsq~~lA~~~gis~~~i~~~ 44 (82)
T 3s8q_A 22 EKGMTQEDLAYKSNLDRTYISGI 44 (82)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHH
Confidence 45666666676666666666655
No 150
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=21.38 E-value=77 Score=18.94 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=16.3
Q ss_pred CCCHHHHHHHhCCCHHHHHhh
Q 037542 69 SENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~~~ 89 (129)
.=++..||+.+|++...|.+.
T Consensus 21 ~~~~~~lA~~~~~S~~~l~r~ 41 (108)
T 3oou_A 21 GMSLKTLGNDFHINAVYLGQL 41 (108)
T ss_dssp CCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHH
Confidence 348899999999988776543
No 151
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=21.24 E-value=77 Score=19.11 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=16.1
Q ss_pred CCHHHHHHHhCCCHHHHHhh
Q 037542 70 ENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~ 89 (129)
=++..||+.+|++...|.+.
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~ 43 (113)
T 3oio_A 24 LSTDDIAYYVGVSRRQLERL 43 (113)
T ss_dssp CCHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 48999999999988776553
No 152
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=20.95 E-value=65 Score=20.51 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=16.1
Q ss_pred CHHHHHHHhCCCHHHHHhh
Q 037542 71 NLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~ 89 (129)
-||.+|..-|.|.++|..+
T Consensus 11 ~LW~lA~~~NFT~~ELeSl 29 (109)
T 2fcw_A 11 DLWDLAQSANLTDKELEAF 29 (109)
T ss_dssp HHHHHHHTSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHH
Confidence 4899999999999988754
No 153
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=20.92 E-value=94 Score=18.34 Aligned_cols=28 Identities=4% Similarity=0.191 Sum_probs=22.6
Q ss_pred EEecCCCCHHHHHHHhCCCHHHHHhhcC
Q 037542 64 YVLQPSENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 64 y~V~~GDTl~~IA~~~~vs~~~l~~~N~ 91 (129)
+..+.|=|...+|++.|++...|.++-.
T Consensus 32 lR~~~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 32 LLIDRDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3456788999999999999988888743
No 154
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=20.76 E-value=70 Score=20.48 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=18.5
Q ss_pred EEEEecCCCCHHHHHHHhCCC
Q 037542 62 VSYVLQPSENLSSVASRFGIE 82 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs 82 (129)
.+..+.+|+||..+|++.|+.
T Consensus 34 ~~v~~~~G~tLL~aa~~~gi~ 54 (126)
T 3hui_A 34 RTVEVEEGATVMEAAIRNAIP 54 (126)
T ss_dssp EEEEEETTSBHHHHHHTTTCT
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 467889999999999998876
No 155
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=20.62 E-value=99 Score=17.09 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=16.3
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
+.|=|...+|++.|++...|.+|
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~ 43 (84)
T 2ef8_A 21 EASLSQSELAIFLGLSQSDISKI 43 (84)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHH
Confidence 45667777777777777777666
No 156
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=20.52 E-value=56 Score=22.71 Aligned_cols=24 Identities=13% Similarity=0.434 Sum_probs=17.8
Q ss_pred ecCCCCH---HHHHHHhCCCHHHHHhh
Q 037542 66 LQPSENL---SSVASRFGIETQAIIDV 89 (129)
Q Consensus 66 V~~GDTl---~~IA~~~~vs~~~l~~~ 89 (129)
.++||-| ..+|++||||-.-+.++
T Consensus 22 l~pG~~LpsE~~La~~lgVSRtpVREA 48 (239)
T 2di3_A 22 LKIGDHLPSERALSETLGVSRSSLREA 48 (239)
T ss_dssp SCTTCBCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHCCCHHHHHHH
Confidence 4678866 47999999988655544
No 157
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=20.49 E-value=1e+02 Score=18.21 Aligned_cols=24 Identities=8% Similarity=0.092 Sum_probs=19.8
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHhh
Q 037542 66 LQPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
+..|-+...||+..|++...+...
T Consensus 41 ~~~G~s~~eIA~~L~iS~~TV~~~ 64 (90)
T 3ulq_B 41 VEKGFTNQEIADALHLSKRSIEYS 64 (90)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 348999999999999998876543
No 158
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=20.27 E-value=1e+02 Score=17.29 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.2
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHhh
Q 037542 66 LQPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
-+.|=|...+|++.|++...|.++
T Consensus 22 ~~~glsq~~lA~~~gis~~~i~~~ 45 (88)
T 2wiu_B 22 QQNGWTQSELAKKIGIKQATISNF 45 (88)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHH
Confidence 456889999999999998888776
No 159
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=20.08 E-value=88 Score=18.24 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHhCCCHHHHH-hhcC
Q 037542 68 PSENLSSVASRFGIETQAII-DVNG 91 (129)
Q Consensus 68 ~GDTl~~IA~~~~vs~~~l~-~~N~ 91 (129)
..+||...|+..|+++++|. ++|.
T Consensus 48 ~~~TL~~aa~~~gid~d~l~~~L~~ 72 (81)
T 2fi0_A 48 RKVSLKQGSKLAGTPMDKIVRTLEA 72 (81)
T ss_dssp HHCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCcHHHHHHHcCCCHHHHHHHHHH
Confidence 46899999999999998766 4554
Done!