Query 037542
Match_columns 129
No_of_seqs 230 out of 1203
Neff 7.9
Searched_HMMs 13730
Date Mon Mar 25 23:05:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037542.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037542hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e0ga_ d.7.1.1 (A:) Membrane- 99.7 3.7E-18 2.7E-22 95.9 5.2 44 62-105 3-48 (48)
2 d1y7ma2 d.7.1.1 (A:1-48) Hypot 99.7 9.7E-18 7.1E-22 94.3 2.3 43 62-104 2-47 (48)
3 d1y7ma2 d.7.1.1 (A:1-48) Hypot 99.3 1.4E-13 1E-17 76.8 1.7 40 1-44 8-47 (48)
4 d1e0ga_ d.7.1.1 (A:) Membrane- 99.3 6.4E-13 4.7E-17 74.1 3.8 39 1-44 9-47 (48)
5 d1ijwc_ a.4.1.2 (C:) HIN recom 93.3 0.033 2.4E-06 29.3 2.8 24 66-89 18-41 (47)
6 d1k78a1 a.4.1.5 (A:19-81) Pax- 83.7 0.48 3.5E-05 26.2 3.0 32 66-97 27-63 (63)
7 d2jn6a1 a.4.1.19 (A:1-89) Unch 80.8 0.58 4.2E-05 27.1 2.8 24 68-91 22-45 (89)
8 d2croa_ a.35.1.2 (A:) cro 434 79.2 0.9 6.6E-05 24.5 3.1 20 69-88 44-63 (65)
9 d1rr7a_ a.4.1.14 (A:) Middle o 78.6 0.88 6.4E-05 26.9 3.1 22 68-89 65-86 (94)
10 d1ijwc_ a.4.1.2 (C:) HIN recom 78.3 1.1 7.9E-05 23.1 3.0 22 1-25 20-41 (47)
11 d1d4ca3 d.168.1.1 (A:360-505) 72.4 0.95 6.9E-05 28.4 2.2 26 66-91 81-110 (146)
12 d2ofya1 a.35.1.3 (A:3-84) Puta 70.9 0.77 5.6E-05 26.3 1.3 20 70-89 56-75 (82)
13 d1r69a_ a.35.1.2 (A:) 434 C1 r 65.2 2.8 0.0002 22.1 2.9 20 69-88 42-61 (63)
14 d1y0pa3 d.168.1.1 (A:362-504) 65.1 1.7 0.00013 27.1 2.2 26 66-91 80-109 (143)
15 d1b0na2 a.35.1.3 (A:1-68) SinR 63.2 1.3 9.3E-05 24.0 1.1 19 70-88 45-63 (68)
16 d1ku3a_ a.4.13.2 (A:) Sigma70 60.2 4 0.00029 21.9 2.9 22 68-89 27-48 (61)
17 d2r1jl1 a.35.1.2 (L:3-68) P22 60.1 1.8 0.00013 23.1 1.4 19 70-88 46-64 (66)
18 d2b5aa1 a.35.1.3 (A:1-77) Regu 60.0 1.8 0.00013 23.8 1.5 20 70-89 53-72 (77)
19 d1nera_ a.35.1.2 (A:) Ner {Bac 59.4 4.8 0.00035 22.6 3.2 23 67-89 20-42 (74)
20 d1utxa_ a.35.1.3 (A:) Putative 59.1 0.96 7E-05 24.4 0.1 20 70-89 44-63 (66)
21 d1pdnc_ a.4.1.5 (C:) Paired pr 58.8 3.6 0.00026 25.1 2.8 26 66-91 29-54 (123)
22 d2oa4a1 a.4.12.3 (A:1-93) Unch 58.2 3.4 0.00025 24.3 2.5 22 70-91 51-72 (93)
23 d2p7vb1 a.4.13.2 (B:546-613) S 51.4 6.6 0.00048 21.4 2.9 20 70-89 26-45 (68)
24 d1ttya_ a.4.13.2 (A:) Sigma70 46.5 8.2 0.0006 22.1 2.9 21 69-89 38-58 (87)
25 d1hmja_ d.78.1.1 (A:) RNA poly 46.4 5.5 0.0004 21.8 2.0 42 64-105 3-51 (68)
26 d1qpza1 a.35.1.5 (A:2-58) Puri 46.2 9.1 0.00066 20.1 2.8 21 71-91 2-23 (57)
27 d1qo8a3 d.168.1.1 (A:360-505) 45.1 5.7 0.00041 24.1 2.2 26 66-91 77-106 (146)
28 d2hsga1 a.35.1.5 (A:2-58) Gluc 45.0 9.8 0.00071 19.9 2.8 19 71-89 3-21 (57)
29 d3c8ya2 d.15.4.2 (A:1-126) Fe- 44.4 9 0.00066 23.5 3.0 22 62-83 9-30 (126)
30 d1j5ya1 a.4.5.1 (A:3-67) Putat 42.8 10 0.00073 20.1 2.7 18 71-88 24-41 (65)
31 d1dgwa_ b.82.1.2 (A:) Seed sto 42.7 35 0.0025 21.5 6.0 33 71-103 146-178 (178)
32 d1hlva1 a.4.1.7 (A:1-66) DNA-b 42.0 9.7 0.00071 20.7 2.6 23 67-89 21-45 (66)
33 d1r8da_ a.6.1.3 (A:) Multidrug 41.6 10 0.00074 22.0 2.9 21 71-91 4-24 (109)
34 d1i7ha_ d.15.4.1 (A:) Adrenodo 40.9 8.4 0.00061 22.6 2.4 22 62-83 16-37 (109)
35 d3bwga1 a.4.5.6 (A:5-82) Trans 40.7 8.8 0.00064 21.0 2.3 24 66-89 16-42 (78)
36 d1efaa1 a.35.1.5 (A:2-60) Lac 40.6 10 0.00076 20.0 2.5 20 70-89 3-22 (59)
37 d2fug33 d.15.4.2 (3:1-95) Nadh 39.9 8.8 0.00064 21.7 2.3 22 62-83 9-30 (95)
38 d1j9ia_ a.6.1.5 (A:) Terminase 38.8 11 0.00078 20.7 2.4 17 73-89 6-22 (68)
39 d1yioa1 a.4.6.2 (A:131-200) Re 37.5 15 0.0011 19.6 3.0 23 66-88 24-46 (70)
40 d1rp3a2 a.4.13.2 (A:164-234) S 37.4 16 0.0011 19.1 3.0 22 67-88 35-56 (71)
41 d1l3la1 a.4.6.2 (A:170-234) Qu 36.9 16 0.0012 19.1 3.0 23 66-88 16-38 (65)
42 d1fsea_ a.4.6.2 (A:) Germinati 36.9 16 0.0011 19.2 3.0 23 66-88 16-38 (67)
43 d1j1va_ a.4.12.2 (A:) Chromoso 34.9 13 0.00095 21.2 2.5 20 71-90 6-25 (94)
44 d1uxda_ a.35.1.5 (A:) Fructose 34.9 11 0.00081 19.8 2.0 21 71-91 2-23 (59)
45 d1hw1a1 a.4.5.6 (A:5-78) Fatty 33.5 13 0.00094 20.2 2.2 19 71-89 29-47 (74)
46 d1l0oc_ a.4.13.2 (C:) SigmaF { 33.4 17 0.0012 18.7 2.6 21 69-89 31-51 (57)
47 d1frda_ d.15.4.1 (A:) 2Fe-2S f 33.2 19 0.0014 20.5 3.1 22 62-83 16-37 (98)
48 d1r8ea1 a.6.1.3 (A:3-120) Tran 32.6 13 0.00098 21.7 2.4 21 71-91 5-25 (118)
49 d1q06a_ a.6.1.3 (A:) Transcrip 32.5 17 0.0012 21.5 2.9 21 71-91 2-22 (127)
50 d1jhga_ a.4.12.1 (A:) Trp repr 32.4 15 0.0011 21.6 2.5 26 66-91 54-80 (101)
51 d1a70a_ d.15.4.1 (A:) 2Fe-2S f 32.3 16 0.0012 20.9 2.6 23 62-84 14-36 (97)
52 d1biaa1 a.4.5.1 (A:1-63) Bioti 31.7 19 0.0014 18.8 2.7 17 71-87 21-37 (63)
53 d2ppxa1 a.35.1.3 (A:30-91) Unc 30.6 25 0.0018 18.1 3.1 25 67-91 10-34 (62)
54 d1xlqa1 d.15.4.1 (A:1-106) 2Fe 30.5 22 0.0016 20.5 3.1 21 62-82 13-33 (106)
55 d1iuea_ d.15.4.1 (A:) 2Fe-2S f 30.5 22 0.0016 20.2 3.1 22 62-83 14-35 (98)
56 d1frra_ d.15.4.1 (A:) 2Fe-2S f 30.4 20 0.0014 20.4 2.8 22 62-83 13-34 (95)
57 d1rp3a1 a.4.13.1 (A:87-163) Si 29.3 23 0.0016 19.1 2.8 20 70-89 27-46 (77)
58 d1ufma_ a.4.5.47 (A:) COP9 sig 29.2 17 0.0013 20.3 2.3 19 71-89 32-50 (84)
59 d1krha3 d.15.4.2 (A:2-105) Ben 28.9 26 0.0019 20.1 3.2 21 62-82 15-35 (104)
60 d1or7a1 a.4.13.2 (A:120-187) S 28.8 28 0.002 18.0 3.1 22 67-88 32-53 (68)
61 d1czpa_ d.15.4.1 (A:) 2Fe-2S f 28.6 23 0.0016 20.2 2.9 22 62-83 16-37 (98)
62 d1d5ya1 a.4.1.8 (A:3-56) Rob t 28.2 11 0.0008 18.9 1.2 19 70-88 20-38 (54)
63 d1a04a1 a.4.6.2 (A:150-216) Ni 28.1 24 0.0017 18.5 2.7 23 66-88 18-40 (67)
64 d1dzfa2 d.78.1.1 (A:144-215) E 28.0 6.4 0.00047 21.8 0.2 44 63-106 9-59 (72)
65 d1uija1 b.82.1.2 (A:6-175) See 27.9 61 0.0044 20.1 5.2 18 72-89 150-167 (170)
66 d2bt6a1 d.15.4.1 (A:5-108) Adr 27.5 27 0.002 20.0 3.1 25 62-86 15-39 (104)
67 d1v4ra1 a.4.5.6 (A:1-100) Tran 27.5 18 0.0013 20.7 2.3 38 66-103 27-67 (100)
68 d1rzsa_ a.35.1.2 (A:) cro p22 27.1 25 0.0018 18.7 2.6 20 71-90 12-31 (61)
69 d2p6ra2 a.289.1.2 (A:489-686) 26.9 25 0.0018 22.9 3.2 27 63-89 79-105 (198)
70 d2piaa3 d.15.4.2 (A:224-321) P 26.1 23 0.0016 20.2 2.5 22 62-83 24-45 (98)
71 d1bl0a1 a.4.1.8 (A:9-62) MarA 25.6 20 0.0014 17.8 2.0 21 69-89 19-39 (54)
72 d2icta1 a.35.1.3 (A:8-94) Anti 25.3 15 0.0011 20.5 1.6 20 70-89 44-63 (87)
73 d1r71a_ a.4.14.1 (A:) Transcri 25.2 27 0.002 20.2 2.8 23 66-88 27-49 (114)
74 d1jq4a_ d.15.4.2 (A:) Methane 24.7 38 0.0027 19.0 3.4 21 62-82 17-37 (98)
75 d1wiaa_ d.15.1.1 (A:) Ubiquiti 24.5 54 0.0039 18.4 4.1 60 62-122 20-93 (95)
76 d1l8qa1 a.4.12.2 (A:290-399) C 24.1 23 0.0017 20.8 2.3 22 70-91 18-39 (110)
77 d1b9ra_ d.15.4.1 (A:) 2Fe-2S f 23.6 22 0.0016 20.5 2.2 21 62-82 13-33 (105)
78 d2cqxa1 a.4.1.1 (A:8-66) LAG1 23.0 35 0.0026 17.5 2.7 21 69-89 29-49 (59)
79 d2o3fa1 a.4.1.20 (A:1-83) Puta 22.8 35 0.0026 18.8 2.9 21 69-89 36-56 (83)
80 d1p4wa_ a.4.6.2 (A:) Transcrip 22.7 37 0.0027 18.7 3.0 25 64-88 32-56 (87)
81 d2cyya1 a.4.5.32 (A:5-64) Puta 22.1 38 0.0028 17.2 2.8 18 70-87 18-35 (60)
82 d1y7ya1 a.35.1.3 (A:5-73) Rest 21.4 45 0.0033 17.1 3.1 23 67-89 20-42 (69)
83 d1fc3a_ a.4.6.3 (A:) Spo0A {Ba 21.2 29 0.0021 20.9 2.3 18 71-88 50-67 (119)
84 d1doia_ d.15.4.1 (A:) 2Fe-2S f 21.1 29 0.0021 20.9 2.4 22 62-83 38-59 (128)
85 d1nvma1 a.5.7.1 (A:291-341) 4- 21.1 32 0.0024 17.5 2.2 16 73-88 9-24 (51)
86 d2o7ta1 a.4.1.9 (A:1-78) Trans 21.1 41 0.003 17.8 2.9 21 69-89 27-47 (78)
87 d1awda_ d.15.4.1 (A:) 2Fe-2S f 20.9 42 0.0031 18.7 3.0 22 62-83 12-33 (94)
88 d2cg4a1 a.4.5.32 (A:4-66) Regu 20.4 42 0.0031 17.2 2.7 19 69-87 19-37 (63)
89 d1x57a1 a.35.1.12 (A:8-85) End 20.3 54 0.0039 17.5 3.3 24 66-89 16-39 (78)
90 d1z67a1 a.259.1.1 (A:3-131) Hy 20.1 22 0.0016 21.8 1.6 21 69-89 70-90 (129)
No 1
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]}
Probab=99.72 E-value=3.7e-18 Score=95.93 Aligned_cols=44 Identities=30% Similarity=0.543 Sum_probs=41.9
Q ss_pred EEEEecCCCCHHHHHHHhCCCHHHHHhhcC--CCCCCCCEEEEcCC
Q 037542 62 VSYVLQPSENLSSVASRFGIETQAIIDVNG--NNIRPFDTLFVPVA 105 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~--~~l~~Gq~L~IP~~ 105 (129)
.+|+|++|||||.||++||+++++|+++|+ +.|++||+|.||+.
T Consensus 3 v~y~V~~GDTl~~IA~~y~vs~~~i~~~N~l~~~l~~Gq~L~i~vk 48 (48)
T d1e0ga_ 3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVK 48 (48)
T ss_dssp CEEEECTTCCHHHHHHHHTCCHHHHHHHCSCGGGCCTTEEEECCCC
T ss_pred EEEEECCCCCHHHHHHHHCCCHHHHHHHcCCcccCcCCCEEEEEeC
Confidence 589999999999999999999999999999 77999999999974
No 2
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=99.66 E-value=9.7e-18 Score=94.25 Aligned_cols=43 Identities=23% Similarity=0.496 Sum_probs=41.1
Q ss_pred EEEEecCCCCHHHHHHHhCCCHHHHHhhcC---CCCCCCCEEEEcC
Q 037542 62 VSYVLQPSENLSSVASRFGIETQAIIDVNG---NNIRPFDTLFVPV 104 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~---~~l~~Gq~L~IP~ 104 (129)
.+|+|++|||||+||++|++++++|+++|+ +.|++||+|+||.
T Consensus 2 i~y~V~~GDTL~~IA~~y~v~~~~i~~~N~~~~~~l~~Gq~L~IPg 47 (48)
T d1y7ma2 2 LTYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPG 47 (48)
T ss_dssp EEEECCTTCCHHHHHHHTTSCCCCCCCTSCTTCSSCCTTCEEEETT
T ss_pred EEEEECCCCCHHHHHHHhCCCHHHHHHHcCCCCCCCCCCCEEEeCC
Confidence 589999999999999999999999999999 6799999999995
No 3
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=99.33 E-value=1.4e-13 Score=76.81 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=36.7
Q ss_pred CCCcHHHHHHhhCCCCCCHHHHHHhCCCCCCCCCCCCCEEEECC
Q 037542 1 SGDTFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPV 44 (129)
Q Consensus 1 ~GDTl~~IA~~~~~~lts~~~l~~~N~~~~~~~l~~Gq~L~IP~ 44 (129)
+|||||+||++|++ ++++|+++|++.+ +.|++||+|+||.
T Consensus 8 ~GDTL~~IA~~y~v---~~~~i~~~N~~~~-~~l~~Gq~L~IPg 47 (48)
T d1y7ma2 8 QGDTLNSIAADFRI---STAALLQANPSLQ-AGLTAGQSIVIPG 47 (48)
T ss_dssp TTCCHHHHHHHTTS---CCCCCCCTSCTTC-SSCCTTCEEEETT
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHcCCCC-CCCCCCCEEEeCC
Confidence 69999999999999 9999999999865 5699999999994
No 4
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]}
Probab=99.31 E-value=6.4e-13 Score=74.07 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=36.0
Q ss_pred CCCcHHHHHHhhCCCCCCHHHHHHhCCCCCCCCCCCCCEEEECC
Q 037542 1 SGDTFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPV 44 (129)
Q Consensus 1 ~GDTl~~IA~~~~~~lts~~~l~~~N~~~~~~~l~~Gq~L~IP~ 44 (129)
+|||||.||++|++ ++++|+++|++. +.|++||+|.||.
T Consensus 9 ~GDTl~~IA~~y~v---s~~~i~~~N~l~--~~l~~Gq~L~i~v 47 (48)
T d1e0ga_ 9 KGDSLSSIAKRHGV---NIKDVMRWNSDT--ANLQPGDKLTLFV 47 (48)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHHHCSCG--GGCCTTEEEECCC
T ss_pred CCCCHHHHHHHHCC---CHHHHHHHcCCc--ccCcCCCEEEEEe
Confidence 69999999999999 999999999983 4699999999985
No 5
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=93.34 E-value=0.033 Score=29.34 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=22.0
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHhh
Q 037542 66 LQPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
+..|.+...||+.|||+...|.++
T Consensus 18 ~~~G~s~~~iA~~~gVSr~TiYry 41 (47)
T d1ijwc_ 18 LEKGHPRQQLAIIFGIGVSTLYRY 41 (47)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHCCCCHHHHHHHHCcCHHHHHhh
Confidence 467999999999999999999887
No 6
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=83.69 E-value=0.48 Score=26.17 Aligned_cols=32 Identities=9% Similarity=0.260 Sum_probs=25.5
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHhhcC-----CCCCCC
Q 037542 66 LQPSENLSSVASRFGIETQAIIDVNG-----NNIRPF 97 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~~N~-----~~l~~G 97 (129)
+..|-+.-.||++|+|+...+.+|=. ..|.||
T Consensus 27 ~~~G~s~r~aA~rf~VS~s~v~k~l~r~reTG~i~PG 63 (63)
T d1k78a1 27 AHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPG 63 (63)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCC
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC
Confidence 46899999999999999988777743 456655
No 7
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=80.79 E-value=0.58 Score=27.09 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHhhcC
Q 037542 68 PSENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 68 ~GDTl~~IA~~~~vs~~~l~~~N~ 91 (129)
.|-++..||+.|||+...|..|=.
T Consensus 22 ~g~s~~~vA~~lGIs~~tl~~W~k 45 (89)
T d2jn6a1 22 DGASLQQIANDLGINRVTLKNWII 45 (89)
T ss_dssp GGSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHH
Confidence 488999999999999999999843
No 8
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=79.16 E-value=0.9 Score=24.45 Aligned_cols=20 Identities=10% Similarity=-0.002 Sum_probs=17.7
Q ss_pred CCCHHHHHHHhCCCHHHHHh
Q 037542 69 SENLSSVASRFGIETQAIID 88 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~~ 88 (129)
.++|..||+.||+++++|..
T Consensus 44 ~~~l~~ia~~l~v~~~~Ll~ 63 (65)
T d2croa_ 44 PRFLFEIAMALNCDPVWLQY 63 (65)
T ss_dssp CTTHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHhh
Confidence 47999999999999999863
No 9
>d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]}
Probab=78.61 E-value=0.88 Score=26.91 Aligned_cols=22 Identities=18% Similarity=0.505 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHhh
Q 037542 68 PSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 68 ~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
.|.+...+|++||+|...|.+.
T Consensus 65 ~G~n~~eLA~kY~lS~~~I~~I 86 (94)
T d1rr7a_ 65 NGRNVSELTTRYGVTFNTVYKA 86 (94)
T ss_dssp CSSCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
Confidence 4999999999999999888753
No 10
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=78.33 E-value=1.1 Score=23.09 Aligned_cols=22 Identities=5% Similarity=-0.174 Sum_probs=19.3
Q ss_pred CCCcHHHHHHhhCCCCCCHHHHHHh
Q 037542 1 SGDTFYSVSTNKYQNLTTYQSVEVV 25 (129)
Q Consensus 1 ~GDTl~~IA~~~~~~lts~~~l~~~ 25 (129)
.|.+...||+.||+ +-..|.++
T Consensus 20 ~G~s~~~iA~~~gV---Sr~TiYry 41 (47)
T d1ijwc_ 20 KGHPRQQLAIIFGI---GVSTLYRY 41 (47)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHHH
T ss_pred CCCCHHHHHHHHCc---CHHHHHhh
Confidence 48899999999999 88888765
No 11
>d1d4ca3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}
Probab=72.39 E-value=0.95 Score=28.44 Aligned_cols=26 Identities=12% Similarity=0.380 Sum_probs=21.5
Q ss_pred ecCCCCHHHHHHHhCCCHHH----HHhhcC
Q 037542 66 LQPSENLSSVASRFGIETQA----IIDVNG 91 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~----l~~~N~ 91 (129)
+.++|||..+|+++|++.+. |.++|.
T Consensus 81 ~~ka~TleeLA~~~gid~~~L~~Tv~~yN~ 110 (146)
T d1d4ca3 81 VKEGKTIEELAKQIDVPAAELAKTVTAYNG 110 (146)
T ss_dssp CEEESSHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred eeEcCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45789999999999998755 677776
No 12
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=70.92 E-value=0.77 Score=26.34 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=18.2
Q ss_pred CCHHHHHHHhCCCHHHHHhh
Q 037542 70 ENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~ 89 (129)
+||..||+.||+++++|...
T Consensus 56 ~tl~kia~~L~v~~~~Ll~~ 75 (82)
T d2ofya1 56 FTIAAVARVLDLSLDDVAAV 75 (82)
T ss_dssp HHHHHHHHHTTCCHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhh
Confidence 69999999999999999864
No 13
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=65.16 E-value=2.8 Score=22.05 Aligned_cols=20 Identities=20% Similarity=0.420 Sum_probs=17.5
Q ss_pred CCCHHHHHHHhCCCHHHHHh
Q 037542 69 SENLSSVASRFGIETQAIID 88 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~~ 88 (129)
-++|..||+.||++++.|..
T Consensus 42 ~~~l~~ia~~l~v~~~~l~~ 61 (63)
T d1r69a_ 42 PRFLPELASALGVSVDWLLN 61 (63)
T ss_dssp CTTHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHhh
Confidence 47899999999999998864
No 14
>d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}
Probab=65.11 E-value=1.7 Score=27.09 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=21.9
Q ss_pred ecCCCCHHHHHHHhCCCHHH----HHhhcC
Q 037542 66 LQPSENLSSVASRFGIETQA----IIDVNG 91 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~----l~~~N~ 91 (129)
+..+|||..+|++.|++.+. |.++|.
T Consensus 80 ~~~adtleeLA~~~gid~~~L~~Tv~~yN~ 109 (143)
T d1y0pa3 80 APTADSLVKLGKMEGIDGKALTETVARYNS 109 (143)
T ss_dssp CCEESSHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred eeecCcHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 56789999999999998755 677776
No 15
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=63.21 E-value=1.3 Score=23.98 Aligned_cols=19 Identities=16% Similarity=0.422 Sum_probs=17.2
Q ss_pred CCHHHHHHHhCCCHHHHHh
Q 037542 70 ENLSSVASRFGIETQAIID 88 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~ 88 (129)
++|..||+.||+++++|..
T Consensus 45 ~~l~~ia~~l~v~~~~l~~ 63 (68)
T d1b0na2 45 QFLEKVSAVLDVSVHTLLD 63 (68)
T ss_dssp HHHHHHHHHHTCCHHHHHC
T ss_pred HHHHHHHHHHCCcHHHHcC
Confidence 6899999999999999875
No 16
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=60.24 E-value=4 Score=21.86 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHhh
Q 037542 68 PSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 68 ~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
..-|+..||+.+|+|.+.+...
T Consensus 27 ~~~tl~eIa~~lgiS~erVrqi 48 (61)
T d1ku3a_ 27 REHTLEEVGAYFGVTRERIRQI 48 (61)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
Confidence 4569999999999999887654
No 17
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=60.08 E-value=1.8 Score=23.11 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=17.0
Q ss_pred CCHHHHHHHhCCCHHHHHh
Q 037542 70 ENLSSVASRFGIETQAIID 88 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~ 88 (129)
|++..||+.|++++++|..
T Consensus 46 ~~l~~ia~~l~v~~~~Ll~ 64 (66)
T d2r1jl1 46 ENLLALSKALQCSPDYLLK 64 (66)
T ss_dssp HHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHhc
Confidence 6899999999999999874
No 18
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=59.98 E-value=1.8 Score=23.82 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=17.5
Q ss_pred CCHHHHHHHhCCCHHHHHhh
Q 037542 70 ENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~ 89 (129)
++|..||+.||+++++|...
T Consensus 53 ~~l~~ia~~l~v~~~~l~~~ 72 (77)
T d2b5aa1 53 INIHKICAALDIPASTFFRK 72 (77)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHhcc
Confidence 57999999999999998754
No 19
>d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]}
Probab=59.39 E-value=4.8 Score=22.59 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=19.6
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
++|=||..|++.+|++...|..+
T Consensus 20 krG~sLa~lsr~~gls~stl~na 42 (74)
T d1nera_ 20 KRKLSLSALSRQFGYAPTTLANA 42 (74)
T ss_dssp TSSCCHHHHHHHHSCCHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHH
Confidence 67999999999999988777654
No 20
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=59.08 E-value=0.96 Score=24.45 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=17.3
Q ss_pred CCHHHHHHHhCCCHHHHHhh
Q 037542 70 ENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~ 89 (129)
+++..||+.||++.++|...
T Consensus 44 ~~l~~ia~~l~v~~~~lf~~ 63 (66)
T d1utxa_ 44 QLALKIAYYLNTPLEDIFQW 63 (66)
T ss_dssp HHHHHHHHHTTSCHHHHEEE
T ss_pred HHHHHHHHHHCCCHHHHcCC
Confidence 58999999999999998654
No 21
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=58.79 E-value=3.6 Score=25.10 Aligned_cols=26 Identities=0% Similarity=0.054 Sum_probs=21.6
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHhhcC
Q 037542 66 LQPSENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~~N~ 91 (129)
++.|.+...||++|+++...+.+|=.
T Consensus 29 ~~~G~s~r~iA~~~~VS~~tV~k~l~ 54 (123)
T d1pdnc_ 29 AADGIRPCVISRQLRVSHGCVSKILN 54 (123)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHCcCHHHHHHHHH
Confidence 47899999999999999987666633
No 22
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=58.21 E-value=3.4 Score=24.31 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=19.9
Q ss_pred CCHHHHHHHhCCCHHHHHhhcC
Q 037542 70 ENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~N~ 91 (129)
-|+..+.++|+++.+++.+|-.
T Consensus 51 ~S~~EAcrrY~LS~eEf~~W~~ 72 (93)
T d2oa4a1 51 ITLAEAKQTYGLSDEEFNSWVS 72 (93)
T ss_dssp CCHHHHHHTTCSSHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 4899999999999999999965
No 23
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=51.43 E-value=6.6 Score=21.42 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.2
Q ss_pred CCHHHHHHHhCCCHHHHHhh
Q 037542 70 ENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~ 89 (129)
-|+..||+.||+|.+.+...
T Consensus 26 ~tl~eI~~~lgiSrerVrqi 45 (68)
T d2p7vb1 26 YTLEEVGKQFDVTRERIRQI 45 (68)
T ss_dssp CCHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHH
Confidence 49999999999999877654
No 24
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=46.53 E-value=8.2 Score=22.08 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=17.8
Q ss_pred CCCHHHHHHHhCCCHHHHHhh
Q 037542 69 SENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~~~ 89 (129)
.-||..||+.||+|-+.+...
T Consensus 38 ~~tl~eI~~~lgiSrERVRQi 58 (87)
T d1ttya_ 38 PKTLEEVGQYFNVTRERIRQI 58 (87)
T ss_dssp CCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHH
Confidence 459999999999999887655
No 25
>d1hmja_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=46.44 E-value=5.5 Score=21.81 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=30.6
Q ss_pred EEecCCCCHHHHHHHhCCCHHHHHhhcC-------CCCCCCCEEEEcCC
Q 037542 64 YVLQPSENLSSVASRFGIETQAIIDVNG-------NNIRPFDTLFVPVA 105 (129)
Q Consensus 64 y~V~~GDTl~~IA~~~~vs~~~l~~~N~-------~~l~~Gq~L~IP~~ 105 (129)
|++-.-+-...|=++|+++.++|=.... -.+++|+++.|--.
T Consensus 3 H~il~~eE~~~ll~~y~i~~~qLP~I~~~DPva~~~g~k~GdvvkI~R~ 51 (68)
T d1hmja_ 3 HEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRK 51 (68)
T ss_pred CEECCHHHHHHHHHHhCCCHHHCCcccccCHHHHHhCCCCCcEEEEEEc
Confidence 4444445567778899998887766655 47999999998643
No 26
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=46.22 E-value=9.1 Score=20.09 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=16.9
Q ss_pred CHHHHHHHhCCCHHHHHhh-cC
Q 037542 71 NLSSVASRFGIETQAIIDV-NG 91 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~-N~ 91 (129)
||.+||+..|++...+-++ |+
T Consensus 2 Ti~dvA~~agVS~sTVSr~ln~ 23 (57)
T d1qpza1 2 TIKDVAKRANVSTTTVSHVINK 23 (57)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHCC
Confidence 7899999999998876554 44
No 27
>d1qo8a3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}
Probab=45.11 E-value=5.7 Score=24.09 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=21.0
Q ss_pred ecCCCCHHHHHHHhCCCHHH----HHhhcC
Q 037542 66 LQPSENLSSVASRFGIETQA----IIDVNG 91 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~----l~~~N~ 91 (129)
+.++|||..+|++.|+.... |.++|.
T Consensus 77 ~~~a~tl~eLA~~~g~~~~~l~~tv~~yN~ 106 (146)
T d1qo8a3 77 LYKGDTVEQLAKSTGMKVADLAKTVSDYNG 106 (146)
T ss_dssp CEEESSHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred eEEcCCHHHHHHHhCCccchhHHHHHHHHH
Confidence 45689999999999998754 557776
No 28
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=44.97 E-value=9.8 Score=19.94 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=16.2
Q ss_pred CHHHHHHHhCCCHHHHHhh
Q 037542 71 NLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~ 89 (129)
||.+||++.|++...+-++
T Consensus 3 Ti~dvA~~agvS~~TVSr~ 21 (57)
T d2hsga1 3 TIYDVAREASVSMATVSRV 21 (57)
T ss_dssp CHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH
Confidence 8899999999998877654
No 29
>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]}
Probab=44.42 E-value=9 Score=23.48 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=19.6
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
..+.+.+|+|+...|++.|+.+
T Consensus 9 ~~v~~~~G~til~aa~~~gi~I 30 (126)
T d3c8ya2 9 VQFNTDEDTTILKFARDNNIDI 30 (126)
T ss_dssp EEEEECCCCBHHHHHHHTTCCC
T ss_pred EEEEeCCCChHHHHHHHcCCcc
Confidence 5799999999999999998854
No 30
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=42.83 E-value=10 Score=20.06 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=14.7
Q ss_pred CHHHHHHHhCCCHHHHHh
Q 037542 71 NLSSVASRFGIETQAIID 88 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~ 88 (129)
|...+|++|+||...|.+
T Consensus 24 s~~~La~~l~VS~~TI~r 41 (65)
T d1j5ya1 24 SGAQLAEELSVSRQVIVQ 41 (65)
T ss_dssp CHHHHHHHHTSCHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHH
Confidence 788999999998866543
No 31
>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}
Probab=42.67 E-value=35 Score=21.50 Aligned_cols=33 Identities=6% Similarity=-0.046 Sum_probs=22.8
Q ss_pred CHHHHHHHhCCCHHHHHhhcCCCCCCCCEEEEc
Q 037542 71 NLSSVASRFGIETQAIIDVNGNNIRPFDTLFVP 103 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N~~~l~~Gq~L~IP 103 (129)
.-.-+|..|+++.+++.++=...-+.|.++.+|
T Consensus 146 ~~evL~~aF~v~~e~~~kl~~~~~~~g~Iv~~P 178 (178)
T d1dgwa_ 146 SKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMP 178 (178)
T ss_dssp CHHHHHHHHTSCHHHHHHHTTSCCSSSSEEECC
T ss_pred CHHHHHHHhCCCHHHHHHHHhcccCCCcEEeCc
Confidence 356788899999999988522122457777765
No 32
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.04 E-value=9.7 Score=20.69 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=16.6
Q ss_pred cCCCC--HHHHHHHhCCCHHHHHhh
Q 037542 67 QPSEN--LSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDT--l~~IA~~~~vs~~~l~~~ 89 (129)
..|.. -.+||+.||+....|..+
T Consensus 21 e~g~k~sq~eIA~~fGv~~STvs~I 45 (66)
T d1hlva1 21 EENPDLRKGEIARRFNIPPSTLSTI 45 (66)
T ss_dssp HHCTTSCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCcchHHHHHHHhCCChhHHHHH
Confidence 44654 567999999977776554
No 33
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=41.57 E-value=10 Score=21.99 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=18.4
Q ss_pred CHHHHHHHhCCCHHHHHhhcC
Q 037542 71 NLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N~ 91 (129)
|+..+|+.+|++...|.-|=.
T Consensus 4 tI~e~A~~~gvs~~tlR~Ye~ 24 (109)
T d1r8da_ 4 QVKQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp CHHHHHHHHSCCHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHH
Confidence 678999999999999988744
No 34
>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]}
Probab=40.85 E-value=8.4 Score=22.63 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=19.2
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
.++.+..|+||..+|++.|+.+
T Consensus 16 ~~v~~~~G~tLl~aa~~~gi~i 37 (109)
T d1i7ha_ 16 AVLEANSGETILDAALRNGIEI 37 (109)
T ss_dssp EEEECCTTCBHHHHHHHTTCCC
T ss_pred cEEEeCCCCcHHHHHHHcCCCC
Confidence 5788999999999999988754
No 35
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=40.69 E-value=8.8 Score=21.01 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=17.6
Q ss_pred ecCCC---CHHHHHHHhCCCHHHHHhh
Q 037542 66 LQPSE---NLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 66 V~~GD---Tl~~IA~~~~vs~~~l~~~ 89 (129)
+++|| +...+|+.|+++...+.++
T Consensus 16 l~~G~~LPse~~La~~~~vSr~tvr~A 42 (78)
T d3bwga1 16 LQQGDKLPVLETLMAQFEVSKSTITKS 42 (78)
T ss_dssp CCTTCBCCCHHHHHHHTTCCHHHHHHH
T ss_pred CCCcCCCcCHHHHHHHHCCCHHHHHHH
Confidence 35555 4578999999988776655
No 36
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=40.65 E-value=10 Score=20.00 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=16.9
Q ss_pred CCHHHHHHHhCCCHHHHHhh
Q 037542 70 ENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~ 89 (129)
=||.+||+..|++...+-.+
T Consensus 3 ~Ti~diA~~agvS~sTVSr~ 22 (59)
T d1efaa1 3 VTLYDVAEYAGVSYQTVSRV 22 (59)
T ss_dssp CCHHHHHHTTTSCHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHH
Confidence 38999999999999887655
No 37
>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=39.86 E-value=8.8 Score=21.67 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=19.3
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
.++.|.+|+||...|++.|+.+
T Consensus 9 ~~~~v~~g~tll~a~~~~gi~i 30 (95)
T d2fug33 9 RIVEVPPGTSVMDAVFHAGYDV 30 (95)
T ss_dssp CEEEECTTCBHHHHHHHHTCCC
T ss_pred EEEEECCCCcHHHHHHhcCCCC
Confidence 3688999999999999998865
No 38
>d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]}
Probab=38.77 E-value=11 Score=20.70 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=15.8
Q ss_pred HHHHHHhCCCHHHHHhh
Q 037542 73 SSVASRFGIETQAIIDV 89 (129)
Q Consensus 73 ~~IA~~~~vs~~~l~~~ 89 (129)
..+|+.||++...|..|
T Consensus 6 ~~lA~iFGVS~~TI~~W 22 (68)
T d1j9ia_ 6 KQLADIFGASIRTIQNW 22 (68)
T ss_dssp HHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHH
Confidence 57899999999999999
No 39
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=37.53 E-value=15 Score=19.59 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=19.3
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHh
Q 037542 66 LQPSENLSSVASRFGIETQAIID 88 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~ 88 (129)
+..|-+...||+..|++...+..
T Consensus 24 l~~G~s~~eIA~~l~iS~~TV~~ 46 (70)
T d1yioa1 24 TIRGLMNKQIAGELGIAEVTVKV 46 (70)
T ss_dssp HTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHH
Confidence 45699999999999999887654
No 40
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=37.38 E-value=16 Score=19.12 Aligned_cols=22 Identities=9% Similarity=-0.005 Sum_probs=18.7
Q ss_pred cCCCCHHHHHHHhCCCHHHHHh
Q 037542 67 QPSENLSSVASRFGIETQAIID 88 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~ 88 (129)
-.|-|...||+.+|++...+..
T Consensus 35 ~~~~s~~eIA~~lgis~~tv~~ 56 (71)
T d1rp3a2 35 YEELPAKEVAKILETSVSRVSQ 56 (71)
T ss_dssp TSCCCHHHHHHHTTSCHHHHHH
T ss_pred hHhCCHHHHHHHHCCCHHHHHH
Confidence 4588999999999999987654
No 41
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=36.91 E-value=16 Score=19.11 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=19.2
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHh
Q 037542 66 LQPSENLSSVASRFGIETQAIID 88 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~ 88 (129)
+-.|.|...||++.+++...+..
T Consensus 16 ~~~G~s~~eIA~~l~iS~~TV~~ 38 (65)
T d1l3la1 16 IAVGKTMEEIADVEGVKYNSVRV 38 (65)
T ss_dssp HTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHhcCCHHHHHHHHCCCHHHHHH
Confidence 45699999999999999877643
No 42
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=36.90 E-value=16 Score=19.24 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=19.4
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHh
Q 037542 66 LQPSENLSSVASRFGIETQAIID 88 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~ 88 (129)
+..|-+...||++.|++...+..
T Consensus 16 ~~~G~s~~eIA~~L~is~~TV~~ 38 (67)
T d1fsea_ 16 LVQDKTTKEIASELFISEKTVRN 38 (67)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHccCCHHHHHHHHCCCHHHHHH
Confidence 56799999999999999877653
No 43
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=34.89 E-value=13 Score=21.22 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=16.1
Q ss_pred CHHHHHHHhCCCHHHHHhhc
Q 037542 71 NLSSVASRFGIETQAIIDVN 90 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N 90 (129)
-+..||+.||++.++|..-.
T Consensus 6 I~~~Va~~f~v~~~~i~~~~ 25 (94)
T d1j1va_ 6 IQKTVAEYYKIKVADLLSKR 25 (94)
T ss_dssp HHHHHHHHTTCCHHHHHSCC
T ss_pred HHHHHHHHhCCCHHHHhCCC
Confidence 46788999999999987543
No 44
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.87 E-value=11 Score=19.81 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=16.5
Q ss_pred CHHHHHHHhCCCHHHHHhh-cC
Q 037542 71 NLSSVASRFGIETQAIIDV-NG 91 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~-N~ 91 (129)
||.+||+..|++...+-++ |+
T Consensus 2 Tl~diA~~agvS~sTVSrvLn~ 23 (59)
T d1uxda_ 2 KLDEIARLAGVSRTTASYVING 23 (59)
T ss_dssp CHHHHHHHHTSCTTHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 7899999999988776543 54
No 45
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=33.47 E-value=13 Score=20.24 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=14.8
Q ss_pred CHHHHHHHhCCCHHHHHhh
Q 037542 71 NLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~ 89 (129)
+...+|++|+++...+.++
T Consensus 29 s~~eLa~~~~vSr~tvr~A 47 (74)
T d1hw1a1 29 AERELSELIGVTRTTLREV 47 (74)
T ss_dssp CHHHHHHHHTCCHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHH
Confidence 4567999999988776654
No 46
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=33.37 E-value=17 Score=18.74 Aligned_cols=21 Identities=14% Similarity=0.442 Sum_probs=17.2
Q ss_pred CCCHHHHHHHhCCCHHHHHhh
Q 037542 69 SENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~~~ 89 (129)
-=|...||+..|++.+++..+
T Consensus 31 ePT~~EiA~~l~~~~e~V~~~ 51 (57)
T d1l0oc_ 31 APTVTEIADHLGISPEDVVLA 51 (57)
T ss_dssp CCBHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHH
Confidence 348899999999999887653
No 47
>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}
Probab=33.23 E-value=19 Score=20.47 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.1
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
.+..|..|+||...|++-|+.+
T Consensus 16 ~ti~v~~g~siLdaa~~~Gi~i 37 (98)
T d1frda_ 16 TTIEIDEETTILDGAEENGIEL 37 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCCC
T ss_pred EEEEeCCCChHHHHHHHcCCCE
Confidence 5678999999999999998763
No 48
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=32.64 E-value=13 Score=21.71 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=18.1
Q ss_pred CHHHHHHHhCCCHHHHHhhcC
Q 037542 71 NLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N~ 91 (129)
|+..+|+.+|++...|.-|=.
T Consensus 5 tI~evA~~~gvs~~tlR~Ye~ 25 (118)
T d1r8ea1 5 SIGEVSKLANVSIKALRYYDK 25 (118)
T ss_dssp EHHHHHHHHTCCHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHH
Confidence 467899999999999988854
No 49
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=32.47 E-value=17 Score=21.54 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=18.3
Q ss_pred CHHHHHHHhCCCHHHHHhhcC
Q 037542 71 NLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N~ 91 (129)
++..+|+.+|+++..|.-|=.
T Consensus 2 ~Ige~A~~~gvs~~TlR~Ye~ 22 (127)
T d1q06a_ 2 NISDVAKITGLTSKAIRFYEE 22 (127)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 578899999999999998855
No 50
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]}
Probab=32.41 E-value=15 Score=21.60 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=22.0
Q ss_pred ecCCC-CHHHHHHHhCCCHHHHHhhcC
Q 037542 66 LQPSE-NLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 66 V~~GD-Tl~~IA~~~~vs~~~l~~~N~ 91 (129)
...|+ +...||+.+|++...|-+.++
T Consensus 54 L~~G~~s~reI~~~~gvs~aTItR~s~ 80 (101)
T d1jhga_ 54 LLRGEMSQRELKNELGAGIATITRGSN 80 (101)
T ss_dssp HHHCCSCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHcCCcCHHHHHHHhCCChHHHHHHHH
Confidence 34686 899999999999999988765
No 51
>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=32.25 E-value=16 Score=20.85 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=19.9
Q ss_pred EEEEecCCCCHHHHHHHhCCCHH
Q 037542 62 VSYVLQPSENLSSVASRFGIETQ 84 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~~ 84 (129)
..+.|.+|+||...+++.|+.+.
T Consensus 14 ~~~~~~~g~tlL~a~~~~Gi~i~ 36 (97)
T d1a70a_ 14 VEFQCPDDVYILDAAEEEGIDLP 36 (97)
T ss_dssp EEEEEETTSCHHHHHHHTTCCCC
T ss_pred EEEEeCCCchHHHHHHHcCCCee
Confidence 57899999999999999998643
No 52
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=31.71 E-value=19 Score=18.78 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=13.7
Q ss_pred CHHHHHHHhCCCHHHHH
Q 037542 71 NLSSVASRFGIETQAII 87 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~ 87 (129)
|...||+++|+|...+.
T Consensus 21 s~~eLa~~l~vS~~ti~ 37 (63)
T d1biaa1 21 SGEQLGETLGMSRAAIN 37 (63)
T ss_dssp CHHHHHHHHTSCHHHHH
T ss_pred CHHHHHHHHCcCHHHHH
Confidence 67899999999876544
No 53
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=30.56 E-value=25 Score=18.09 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=21.6
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhhcC
Q 037542 67 QPSENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~N~ 91 (129)
+.|=|-..+|+..|++...|..|=.
T Consensus 10 ~~gltQ~elA~~lGvs~~tvs~~E~ 34 (62)
T d2ppxa1 10 ALKLTQEEFSARYHIPLGTLRDWEQ 34 (62)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHC
Confidence 5677889999999999999999844
No 54
>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]}
Probab=30.47 E-value=22 Score=20.50 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=17.2
Q ss_pred EEEEecCCCCHHHHHHHhCCC
Q 037542 62 VSYVLQPSENLSSVASRFGIE 82 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs 82 (129)
.+-.+..|+||..+|++.|+.
T Consensus 13 ~~i~~~~G~tLl~aa~~~gi~ 33 (106)
T d1xlqa1 13 RELDVADGVSLMQAAVSNGIY 33 (106)
T ss_dssp EEEECCTTCBHHHHHHHTTCT
T ss_pred EEEEeCCCChHHHHHHHhCcC
Confidence 345568899999999999883
No 55
>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=30.45 E-value=22 Score=20.25 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=19.1
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
.++.|.+|+||...|++.|+.+
T Consensus 14 ~~~~~~~getlLda~~~~gi~i 35 (98)
T d1iuea_ 14 KKIECNEDEYILDASERQNVEL 35 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCCC
T ss_pred EEEEECCCCcHHHHHHHcCCCe
Confidence 5788899999999999998753
No 56
>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}
Probab=30.37 E-value=20 Score=20.39 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=19.0
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
.++.|.+|+||...|++.|+.+
T Consensus 13 ~~~~~~~g~slLda~~~~Gi~i 34 (95)
T d1frra_ 13 FTLDVPEGTTILDAAEEAGYDL 34 (95)
T ss_dssp EEEEECTTCCHHHHHHHTTCCC
T ss_pred EEEEECCCCcHHHHHHHcCCCE
Confidence 4678999999999999998863
No 57
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=29.31 E-value=23 Score=19.06 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=17.2
Q ss_pred CCHHHHHHHhCCCHHHHHhh
Q 037542 70 ENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~ 89 (129)
=|...||+..|++++++.++
T Consensus 27 Pt~~EiA~~lg~s~~e~~~~ 46 (77)
T d1rp3a1 27 PTDEEVAKELGISTEELFKT 46 (77)
T ss_dssp CCHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 47889999999999988765
No 58
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.17 E-value=17 Score=20.30 Aligned_cols=19 Identities=5% Similarity=0.158 Sum_probs=15.9
Q ss_pred CHHHHHHHhCCCHHHHHhh
Q 037542 71 NLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~ 89 (129)
+|..||+.|+++.+++..+
T Consensus 32 sl~~la~~l~l~~~evE~~ 50 (84)
T d1ufma_ 32 TFEELGALLEIPAAKAEKI 50 (84)
T ss_dssp EHHHHHHHTTSCHHHHHHH
T ss_pred eHHHHHHHHCCCHHHHHHH
Confidence 6999999999998876554
No 59
>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]}
Probab=28.87 E-value=26 Score=20.12 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=18.4
Q ss_pred EEEEecCCCCHHHHHHHhCCC
Q 037542 62 VSYVLQPSENLSSVASRFGIE 82 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs 82 (129)
.+..|..|+||...|.+.|+.
T Consensus 15 ~~~~~~~getlL~aa~~~gi~ 35 (104)
T d1krha3 15 RFICIAQGETLSDAAYRQQIN 35 (104)
T ss_dssp EEEEECTTCCHHHHHHHTTCC
T ss_pred EEEEeCCCCcHHHHHHHcCCC
Confidence 467899999999999999874
No 60
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=28.85 E-value=28 Score=18.03 Aligned_cols=22 Identities=5% Similarity=0.028 Sum_probs=18.0
Q ss_pred cCCCCHHHHHHHhCCCHHHHHh
Q 037542 67 QPSENLSSVASRFGIETQAIID 88 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~ 88 (129)
-.|=+...||+.+|++...+..
T Consensus 32 ~~~~s~~eIA~~lgis~~tv~~ 53 (68)
T d1or7a1 32 LDGLSYEEIAAIMDCPVGTVRS 53 (68)
T ss_dssp TTCCCHHHHHHHTTSCHHHHHH
T ss_pred HhCCCHHHHHHHHCcCHHHHHH
Confidence 3477899999999999987654
No 61
>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}
Probab=28.55 E-value=23 Score=20.23 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=18.9
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
.++.|.+|+||...|++.|+.+
T Consensus 16 ~~~~v~~~~slL~a~~~~Gi~i 37 (98)
T d1czpa_ 16 HEIEVPDDEYILDAAEEQGYDL 37 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCCC
T ss_pred EEEEeCcCChHHHHHHHcCCCe
Confidence 4678899999999999998854
No 62
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=28.24 E-value=11 Score=18.89 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=14.5
Q ss_pred CCHHHHHHHhCCCHHHHHh
Q 037542 70 ENLSSVASRFGIETQAIID 88 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~ 88 (129)
=||..||+.+|++...|.+
T Consensus 20 itl~~lA~~~~~S~~~l~r 38 (54)
T d1d5ya1 20 LSLDNVAAKAGYSKWHLQR 38 (54)
T ss_dssp CCCHHHHTTTSSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 3778888888888877654
No 63
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=28.11 E-value=24 Score=18.48 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=19.2
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHh
Q 037542 66 LQPSENLSSVASRFGIETQAIID 88 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~ 88 (129)
+-.|-+...||++.+++...+..
T Consensus 18 l~~G~s~~eIA~~l~iS~~TV~~ 40 (67)
T d1a04a1 18 IAQGLPNKMIARRLDITESTVKV 40 (67)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHhCCCHHHHHHHHCCCHHHHHH
Confidence 45699999999999999887654
No 64
>d1dzfa2 d.78.1.1 (A:144-215) Eukaryotic RPB5 C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.01 E-value=6.4 Score=21.77 Aligned_cols=44 Identities=5% Similarity=0.103 Sum_probs=33.2
Q ss_pred EEEecCCCCHHHHHHHhCCCHHHHHhhcC-------CCCCCCCEEEEcCCC
Q 037542 63 SYVLQPSENLSSVASRFGIETQAIIDVNG-------NNIRPFDTLFVPVAR 106 (129)
Q Consensus 63 ~y~V~~GDTl~~IA~~~~vs~~~l~~~N~-------~~l~~Gq~L~IP~~~ 106 (129)
.|.+-..+-...+-++|+++.++|=..-. -.+++|+.+.|--..
T Consensus 9 kH~~l~~eE~~~il~~y~i~~~qLP~I~~~DPva~~~g~~~GdvikI~R~s 59 (72)
T d1dzfa2 9 KHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKS 59 (72)
T ss_dssp EEEECCHHHHHHHHHHTTCCGGGSCEECTTCHHHHHHTCCTTCEEEEECTT
T ss_pred CeEEcCHHHHHHHHHHhCCCHhHCCeecccCHhhhhcCCCCCCEEEEEEcC
Confidence 57776667778888899998777655544 479999999997443
No 65
>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}
Probab=27.89 E-value=61 Score=20.09 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=14.7
Q ss_pred HHHHHHHhCCCHHHHHhh
Q 037542 72 LSSVASRFGIETQAIIDV 89 (129)
Q Consensus 72 l~~IA~~~~vs~~~l~~~ 89 (129)
-.-+|..|+++.++|.++
T Consensus 150 ~evLa~aF~v~~e~i~kl 167 (170)
T d1uija1 150 HNILETSFHSEFEEINRV 167 (170)
T ss_dssp HHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 556889999999988764
No 66
>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.54 E-value=27 Score=19.99 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=19.8
Q ss_pred EEEEecCCCCHHHHHHHhCCCHHHH
Q 037542 62 VSYVLQPSENLSSVASRFGIETQAI 86 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~~~l 86 (129)
.+-.+..|+||..+|++.|+.+..+
T Consensus 15 ~~i~~~~G~tLl~~~~~~gi~i~~~ 39 (104)
T d2bt6a1 15 LTTKGKIGDSLLDVVVQNNLDIDGF 39 (104)
T ss_dssp EEEEEETTCBHHHHHHHTTCCCTTT
T ss_pred EEEEeCCCchHHHHHHHcCCCcccc
Confidence 4566789999999999998876543
No 67
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=27.50 E-value=18 Score=20.67 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=24.2
Q ss_pred ecCCC---CHHHHHHHhCCCHHHHHhhcCCCCCCCCEEEEc
Q 037542 66 LQPSE---NLSSVASRFGIETQAIIDVNGNNIRPFDTLFVP 103 (129)
Q Consensus 66 V~~GD---Tl~~IA~~~~vs~~~l~~~N~~~l~~Gq~L~IP 103 (129)
+++|| +...+|+.||++...+.++=......|-....+
T Consensus 27 l~~G~~LPs~r~La~~~~vSr~tvr~Al~~L~~~Gli~~~~ 67 (100)
T d1v4ra1 27 LAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRG 67 (100)
T ss_dssp CCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEET
T ss_pred CCCcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEec
Confidence 35565 557899999999988877755223334333333
No 68
>d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]}
Probab=27.12 E-value=25 Score=18.70 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=17.6
Q ss_pred CHHHHHHHhCCCHHHHHhhc
Q 037542 71 NLSSVASRFGIETQAIIDVN 90 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~~N 90 (129)
+...+|+.+||+...|.+|-
T Consensus 12 ~~~k~A~algis~~AVsqWG 31 (61)
T d1rzsa_ 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHh
Confidence 56789999999999999994
No 69
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=26.91 E-value=25 Score=22.93 Aligned_cols=27 Identities=7% Similarity=0.204 Sum_probs=22.0
Q ss_pred EEEecCCCCHHHHHHHhCCCHHHHHhh
Q 037542 63 SYVLQPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 63 ~y~V~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
.|-+-.+.+++.|+++||+...+|...
T Consensus 79 L~dwi~E~~~~~I~~~y~v~~Gdl~~~ 105 (198)
T d2p6ra2 79 LKDWIEEKDEDEICAKYGIAPGDLRRI 105 (198)
T ss_dssp HHHHHTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCCCcHHHHHH
Confidence 345667889999999999999887654
No 70
>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]}
Probab=26.13 E-value=23 Score=20.23 Aligned_cols=22 Identities=9% Similarity=0.224 Sum_probs=19.1
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
.++.|.+|+||...|.+.|+.+
T Consensus 24 ~~~~v~~~~slL~aa~~~Gi~i 45 (98)
T d2piaa3 24 TSFEIPANRSILEVLRDANVRV 45 (98)
T ss_dssp CEEEECTTSCHHHHHHHTTCCC
T ss_pred EEEEECcCCcHHHHHHhcCCcc
Confidence 4789999999999999988754
No 71
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=25.63 E-value=20 Score=17.78 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=16.5
Q ss_pred CCCHHHHHHHhCCCHHHHHhh
Q 037542 69 SENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~~~ 89 (129)
.-|+..||+..|++...+.+.
T Consensus 19 ~~tl~~lA~~~~~s~~~l~r~ 39 (54)
T d1bl0a1 19 PLSLEKVSERSGYSKWHLQRM 39 (54)
T ss_dssp CCCCHHHHHHSSSCHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHH
Confidence 458889999999988777653
No 72
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=25.32 E-value=15 Score=20.47 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=16.5
Q ss_pred CCHHHHHHHhCCCHHHHHhh
Q 037542 70 ENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~ 89 (129)
|++..||+.||++++-++.+
T Consensus 44 ~~~~kla~~lgvs~~~~L~l 63 (87)
T d2icta1 44 EMAIKLSVVIGSSPQMWLNL 63 (87)
T ss_dssp HHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHhh
Confidence 68889999999999866554
No 73
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=25.24 E-value=27 Score=20.22 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=18.5
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHh
Q 037542 66 LQPSENLSSVASRFGIETQAIID 88 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~ 88 (129)
+..|.|...||+++|.+...+.+
T Consensus 27 ~~~g~s~~eiA~~~G~s~~~V~~ 49 (114)
T d1r71a_ 27 LAKGKKKGDIAKEIGKSPAFITQ 49 (114)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHhCCCHHHHHHHHCCcHHHHHH
Confidence 35688999999999998766544
No 74
>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]}
Probab=24.66 E-value=38 Score=19.02 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=18.4
Q ss_pred EEEEecCCCCHHHHHHHhCCC
Q 037542 62 VSYVLQPSENLSSVASRFGIE 82 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs 82 (129)
..+.|.+|++|...|.+.|+.
T Consensus 17 ~~~~~~~g~slLdaa~~~Gi~ 37 (98)
T d1jq4a_ 17 LRFECRSDEDVITAALRQNIF 37 (98)
T ss_dssp EEEEEESCCTHHHHHHHHTCC
T ss_pred EEEEeCCCchHHHHHHHcCCC
Confidence 467889999999999999884
No 75
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.51 E-value=54 Score=18.42 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=34.4
Q ss_pred EEEEecCCCCHHHHHHHh-CCCHHHHH-hhcC------------CCCCCCCEEEEcCCCCCCCCCCCCCCCCCCC
Q 037542 62 VSYVLQPSENLSSVASRF-GIETQAII-DVNG------------NNIRPFDTLFVPVARLPELKQPAVAPSSAPP 122 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~-~vs~~~l~-~~N~------------~~l~~Gq~L~IP~~~~p~~~~~~~~~~~~~~ 122 (129)
..+.|.+.||+..|-++. .+..+.++ -+++ ..|..|.+|.+=... |....+++.|++.|+
T Consensus 20 ~~v~v~~~~TV~~lK~~i~~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~-~~~~~~~~~~~~~p~ 93 (95)
T d1wiaa_ 20 ELAVARPEDTVGTLKSKYFPGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP-PGAAVSGPSASSGPS 93 (95)
T ss_dssp EEEEECSSSBHHHHHHHHSSSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC-CCCCCCCCCCCCCCC
T ss_pred EEEEECCcCcHHHHHHHHhcCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcC-CCCCCCCCCCCCCCC
Confidence 578999999999998764 33322100 0111 568899988775443 333333334444443
No 76
>d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}
Probab=24.05 E-value=23 Score=20.78 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=17.1
Q ss_pred CCHHHHHHHhCCCHHHHHhhcC
Q 037542 70 ENLSSVASRFGIETQAIIDVNG 91 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~~~N~ 91 (129)
+-+..||+.||++.++|..-..
T Consensus 18 ~Ii~~Va~~f~i~~~di~sk~R 39 (110)
T d1l8qa1 18 QIVEFVANYYAVKVEDILSDKR 39 (110)
T ss_dssp HHHHHHHHHHSCCHHHHSSCCC
T ss_pred HHHHHHHHHhCCCHHHHhCCCC
Confidence 4467789999999999876544
No 77
>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]}
Probab=23.65 E-value=22 Score=20.47 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=18.1
Q ss_pred EEEEecCCCCHHHHHHHhCCC
Q 037542 62 VSYVLQPSENLSSVASRFGIE 82 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs 82 (129)
.+..+..|+||..+|.+.|+.
T Consensus 13 ~~v~~~~G~tLl~aa~~~gi~ 33 (105)
T d1b9ra_ 13 YAVDAQDGQSLMEVATQNGVP 33 (105)
T ss_dssp EEEECCTTCCTTHHHHHHTCC
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 456778999999999999985
No 78
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.04 E-value=35 Score=17.54 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=17.8
Q ss_pred CCCHHHHHHHhCCCHHHHHhh
Q 037542 69 SENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~~~ 89 (129)
.+.+..||++.|++...|..|
T Consensus 29 ~~~~~~LA~~lgls~~qV~~W 49 (59)
T d2cqxa1 29 EKRLKGLSKQLDWSVRKIQCW 49 (59)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHH
Confidence 456788999999999998877
No 79
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=22.78 E-value=35 Score=18.76 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=18.0
Q ss_pred CCCHHHHHHHhCCCHHHHHhh
Q 037542 69 SENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~~~ 89 (129)
..|+..||++.+++...|.++
T Consensus 36 ~~si~~lA~~~~vS~sTi~Rf 56 (83)
T d2o3fa1 36 ESTVNEISALANSSDAAVIRL 56 (83)
T ss_dssp TCCHHHHHHHTTCCHHHHHHH
T ss_pred HccHHHHHHHHCCCHHHHHHH
Confidence 458999999999999988776
No 80
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=22.72 E-value=37 Score=18.70 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=20.3
Q ss_pred EEecCCCCHHHHHHHhCCCHHHHHh
Q 037542 64 YVLQPSENLSSVASRFGIETQAIID 88 (129)
Q Consensus 64 y~V~~GDTl~~IA~~~~vs~~~l~~ 88 (129)
.-+..|.+...||++.+++...+..
T Consensus 32 ~ll~~G~s~~eIA~~l~iS~~TV~~ 56 (87)
T d1p4wa_ 32 RLFAEGFLVTEIAKKLNRSIKTISS 56 (87)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHH
Confidence 3456799999999999999877654
No 81
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.10 E-value=38 Score=17.18 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=14.7
Q ss_pred CCHHHHHHHhCCCHHHHH
Q 037542 70 ENLSSVASRFGIETQAII 87 (129)
Q Consensus 70 DTl~~IA~~~~vs~~~l~ 87 (129)
-++..||++.|++...+.
T Consensus 18 ~s~~eiA~~l~ls~~~v~ 35 (60)
T d2cyya1 18 APLREISKITGLAESTIH 35 (60)
T ss_dssp CCHHHHHHHHCSCHHHHH
T ss_pred CCHHHHHHHHCcCHHHHH
Confidence 388999999999886643
No 82
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=21.39 E-value=45 Score=17.14 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=18.6
Q ss_pred cCCCCHHHHHHHhCCCHHHHHhh
Q 037542 67 QPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 67 ~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
+.|=|...+|++.|++...|.++
T Consensus 20 ~~gltq~~lA~~~gis~~~i~~~ 42 (69)
T d1y7ya1 20 AKGLSQETLAFLSGLDRSYVGGV 42 (69)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHhHhCCCHHHHHHH
Confidence 56778888888888888887777
No 83
>d1fc3a_ a.4.6.3 (A:) Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=21.22 E-value=29 Score=20.91 Aligned_cols=18 Identities=6% Similarity=0.211 Sum_probs=14.3
Q ss_pred CHHHHHHHhCCCHHHHHh
Q 037542 71 NLSSVASRFGIETQAIID 88 (129)
Q Consensus 71 Tl~~IA~~~~vs~~~l~~ 88 (129)
-.-.||++|+++...+.+
T Consensus 50 LYp~IA~ky~TT~s~VER 67 (119)
T d1fc3a_ 50 LYPDIAKKYNTTASRVER 67 (119)
T ss_dssp HHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHH
Confidence 456799999999877654
No 84
>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=21.12 E-value=29 Score=20.95 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=19.4
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
.++.|.+|+||...|++-|+.+
T Consensus 38 ~t~~v~~g~tlLdaa~~aGi~i 59 (128)
T d1doia_ 38 GSLEVNEGEYILEAAEAQGYDW 59 (128)
T ss_dssp EEEECCTTSCHHHHHHHTTCCC
T ss_pred eEEEECcCChHHHHHHHcCCCC
Confidence 5789999999999999988754
No 85
>d1nvma1 a.5.7.1 (A:291-341) 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain {Pseudomonas sp. [TaxId: 306]}
Probab=21.09 E-value=32 Score=17.53 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=12.0
Q ss_pred HHHHHHhCCCHHHHHh
Q 037542 73 SSVASRFGIETQAIID 88 (129)
Q Consensus 73 ~~IA~~~~vs~~~l~~ 88 (129)
...|++||++..+|.-
T Consensus 9 ~raa~~ygv~~rdil~ 24 (51)
T d1nvma1 9 EIAAAKYNLKTLDILV 24 (51)
T ss_dssp HHHHHHHTCCHHHHHH
T ss_pred HHHHHHhCCCHHHHHH
Confidence 3568899998877653
No 86
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=21.07 E-value=41 Score=17.83 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=17.2
Q ss_pred CCCHHHHHHHhCCCHHHHHhh
Q 037542 69 SENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~~~ 89 (129)
+=|+..||++-|++...|...
T Consensus 27 ~~t~~~Ia~~agvs~~t~y~~ 47 (78)
T d2o7ta1 27 SLTMENIAEQAGVGVATLYRN 47 (78)
T ss_dssp GCCHHHHHHHHTCCHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHH
Confidence 458999999999998887653
No 87
>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}
Probab=20.86 E-value=42 Score=18.73 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=19.0
Q ss_pred EEEEecCCCCHHHHHHHhCCCH
Q 037542 62 VSYVLQPSENLSSVASRFGIET 83 (129)
Q Consensus 62 ~~y~V~~GDTl~~IA~~~~vs~ 83 (129)
.++.|.+|+||-..|++-|+.+
T Consensus 12 ~~~~~~~~~slL~aa~~~Gi~i 33 (94)
T d1awda_ 12 ETIECPEDTYILDAAEEAGLDL 33 (94)
T ss_dssp EEEECCTTSCHHHHHHHTTCCC
T ss_pred EEEEeCCCCcHHHHHHHcCCcE
Confidence 4688899999999999988754
No 88
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=20.36 E-value=42 Score=17.20 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=15.3
Q ss_pred CCCHHHHHHHhCCCHHHHH
Q 037542 69 SENLSSVASRFGIETQAII 87 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~ 87 (129)
--++..||++.|++...+.
T Consensus 19 r~s~~eiA~~l~ls~~~v~ 37 (63)
T d2cg4a1 19 RTAYAELAKQFGVSPETIH 37 (63)
T ss_dssp TSCHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHH
Confidence 3488999999999887654
No 89
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.27 E-value=54 Score=17.45 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=20.6
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHhh
Q 037542 66 LQPSENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 66 V~~GDTl~~IA~~~~vs~~~l~~~ 89 (129)
-..|=|...+|++.|++...|.+|
T Consensus 16 ~~~gltq~~lA~~~gis~~~is~~ 39 (78)
T d1x57a1 16 QSKGLTQKDLATKINEKPQVIADY 39 (78)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHcCCChhHHHHcCCCCHHHHHHH
Confidence 356789999999999999988888
No 90
>d1z67a1 a.259.1.1 (A:3-131) Hypothetical protein YidB {Shigella flexneri [TaxId: 623]}
Probab=20.09 E-value=22 Score=21.82 Aligned_cols=21 Identities=14% Similarity=0.464 Sum_probs=17.4
Q ss_pred CCCHHHHHHHhCCCHHHHHhh
Q 037542 69 SENLSSVASRFGIETQAIIDV 89 (129)
Q Consensus 69 GDTl~~IA~~~~vs~~~l~~~ 89 (129)
.|++..+|++.|++.+++...
T Consensus 70 ~d~l~~lA~q~Gl~~~~~~~~ 90 (129)
T d1z67a1 70 TNAVSDLGQKLGVDTSTASSL 90 (129)
T ss_dssp HHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHH
Confidence 578999999999998876543
Done!