BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037543
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ULC5|ACSL5_HUMAN Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1
SV=1
Length = 683
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 26 IPMAIRAEKALEAIYVCCFGKELVEEEDERLLVTILRAVFPTVEQPEIERIVKDKARKVA 85
+P+A E+ ++A+ C + + D RLL ++ + PT+ P + R++ KV
Sbjct: 305 LPLAHMFERIVQAVVYSCGARVGFFQGDIRLLADDMKTLKPTL-FPAVPRLLNRIYDKV- 362
Query: 86 EGSDETNVPESKPLPKEAVKQQMKDLE 112
+E P K L K AV + K+L+
Sbjct: 363 --QNEAKTPLKKFLLKLAVSSKFKELQ 387
>sp|Q20745|UNC84_CAEEL Nuclear migration and anchoring protein unc-84 OS=Caenorhabditis
elegans GN=unc-84 PE=1 SV=2
Length = 1111
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 52 EDERLLVTILRAVFPTVEQPEIERIVKDKARKVAEGSDE 90
ED ++ I +A+ PT P++ERIV++ RKV + DE
Sbjct: 795 EDVVQVIPIPQAITPT---PDVERIVEEPLRKVTDVEDE 830
>sp|Q8KCH9|THIC_CHLTE Phosphomethylpyrimidine synthase OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=thiC PE=3 SV=1
Length = 556
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 17 AKLNAVTPTIP-MAIRAEKALEAIYVCCFGKELVEEEDERLLVTILRAVFP-TVEQPEIE 74
A+ VTP + +AIR +ALEA C GK V E R V RA+ P + PEIE
Sbjct: 118 ARKGIVTPEMEYVAIRENQALEAWIEKCGGKP-VTPEMVRSEVARGRAIIPANINHPEIE 176
Query: 75 RIV 77
++
Sbjct: 177 PMI 179
>sp|Q39EU4|HSCA_BURS3 Chaperone protein HscA homolog OS=Burkholderia sp. (strain 383)
GN=hscA PE=3 SV=1
Length = 622
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 30 IRAEKALEAIYVCCFGKELVEEEDERLLVTILRAVFPTVEQPEIERIVKDKARKVAEGSD 89
+ AE+ LEA + + DER V L A V Q + ++ + +AEG+D
Sbjct: 540 VEAERMLEATQAALAADGELLDADERTQVDTLAAALRAVAQGDDTNAIEAATKALAEGTD 599
Query: 90 E 90
E
Sbjct: 600 E 600
>sp|B1JV00|HSCA_BURCC Chaperone protein HscA homolog OS=Burkholderia cenocepacia (strain
MC0-3) GN=hscA PE=3 SV=1
Length = 622
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 30 IRAEKALEAIYVCCFGKELVEEEDERLLVTILRAVFPTVEQPEIERIVKDKARKVAEGSD 89
+ AE+ LEA + E DER V L A V Q + ++ + +A+G+D
Sbjct: 540 VEAERMLEATQAALAADGELLEADERAQVDTLAAALRAVAQGDDTNAIEAATKALADGTD 599
Query: 90 E 90
E
Sbjct: 600 E 600
>sp|Q0IHN5|EME2_XENTR Probable crossover junction endonuclease EME2 OS=Xenopus tropicalis
GN=eme2 PE=2 SV=1
Length = 503
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 25 TIPMAIRAEKALEAIYVCCFGKELVEEEDERLLVTI 60
++P +I + + A + C G ++ EEE+++LLV +
Sbjct: 193 SVPQSISWRREMPADWTCIEGMDMKEEEEDQLLVLV 228
>sp|Q97BW9|SUI1_THEVO Protein translation factor SUI1 homolog OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0336 PE=3 SV=1
Length = 100
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 57 LVTILRAVFPTVEQPEIERIVKDKARKVAEGS--DETNVPESKPLPKEAVKQQMKDLEF 113
VTI+ + P +E +IE+I K+ +KVA G E + E + ++ VK+ ++D+ F
Sbjct: 38 FVTIIEGIDPKIE--DIEKIAKELKKKVASGGTVKEGRIIELQGDHRQEVKKFLEDMGF 94
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,967,706
Number of Sequences: 539616
Number of extensions: 1489020
Number of successful extensions: 5888
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 5839
Number of HSP's gapped (non-prelim): 77
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)