Query 037543
Match_columns 120
No_of_seqs 16 out of 18
Neff 2.3
Searched_HMMs 46136
Date Fri Mar 29 13:19:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02845 CUE: CUE domain; Int 71.6 5.7 0.00012 23.5 2.8 21 59-79 6-26 (42)
2 smart00546 CUE Domain that may 64.1 9.5 0.00021 22.5 2.7 21 60-80 8-28 (43)
3 KOG3612 PHD Zn-finger protein 54.9 5.6 0.00012 36.9 0.9 14 37-50 536-549 (588)
4 PF03474 DMA: DMRTA motif; In 50.9 19 0.00042 22.6 2.6 20 59-78 6-25 (39)
5 PF11247 DUF2675: Protein of u 36.7 11 0.00023 27.8 -0.2 28 62-89 14-41 (98)
6 PF04614 Pex19: Pex19 protein 32.8 89 0.0019 25.1 4.5 79 27-119 69-161 (248)
7 PF02439 Adeno_E3_CR2: Adenovi 31.3 22 0.00047 22.4 0.6 10 39-48 25-34 (38)
8 PF13099 DUF3944: Domain of un 30.8 17 0.00037 22.4 0.1 10 109-118 5-14 (35)
9 PF08708 PriCT_1: Primase C te 30.1 1.2E+02 0.0026 19.1 3.9 21 64-84 49-69 (71)
10 PF10472 CReP_N: eIF2-alpha ph 26.9 43 0.00092 30.0 1.9 22 97-118 283-308 (411)
11 PF11103 DUF2887: Protein of u 24.7 83 0.0018 25.2 3.0 22 55-76 178-199 (200)
12 PF04363 DUF496: Protein of un 23.2 1.2E+02 0.0026 22.5 3.4 52 54-106 35-86 (95)
13 PRK05645 lipid A biosynthesis 23.1 1.8E+02 0.0039 22.9 4.5 33 55-87 44-76 (295)
14 PF09275 Pertus-S4-tox: Pertus 22.6 34 0.00074 25.5 0.4 28 37-65 45-72 (110)
15 PRK08727 hypothetical protein; 22.2 1E+02 0.0022 23.6 2.9 38 46-83 137-177 (233)
16 PF10978 DUF2785: Protein of u 21.8 3.6E+02 0.0077 20.3 6.3 59 31-89 91-152 (175)
17 COG4920 Predicted membrane pro 20.7 54 0.0012 27.7 1.2 19 100-118 75-93 (249)
18 PRK05423 hypothetical protein; 20.6 1.1E+02 0.0024 22.9 2.8 52 54-106 42-93 (104)
19 PF04405 ScdA_N: Domain of Unk 20.4 30 0.00065 22.4 -0.2 15 38-52 23-37 (56)
No 1
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=71.60 E-value=5.7 Score=23.46 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=16.7
Q ss_pred HHHHhhcCCCChHHHHHHHHH
Q 037543 59 TILRAVFPTVEQPEIERIVKD 79 (120)
Q Consensus 59 ~mL~aVFPsV~~~eIer~V~~ 79 (120)
..|..+||+++...|+.....
T Consensus 6 ~~L~~mFP~~~~~~I~~~L~~ 26 (42)
T PF02845_consen 6 QQLQEMFPDLDREVIEAVLQA 26 (42)
T ss_dssp HHHHHHSSSS-HHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHH
Confidence 457789999999999998854
No 2
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=64.13 E-value=9.5 Score=22.45 Aligned_cols=21 Identities=19% Similarity=0.545 Sum_probs=17.0
Q ss_pred HHHhhcCCCChHHHHHHHHHH
Q 037543 60 ILRAVFPTVEQPEIERIVKDK 80 (120)
Q Consensus 60 mL~aVFPsV~~~eIer~V~~k 80 (120)
.|...||+++...|++.+.+.
T Consensus 8 ~L~~mFP~l~~~~I~~~L~~~ 28 (43)
T smart00546 8 DLKDMFPNLDEEVIKAVLEAN 28 (43)
T ss_pred HHHHHCCCCCHHHHHHHHHHc
Confidence 355679999999999988753
No 3
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=54.87 E-value=5.6 Score=36.90 Aligned_cols=14 Identities=43% Similarity=1.030 Sum_probs=11.9
Q ss_pred hhHHhhhcCCccch
Q 037543 37 EAIYVCCFGKELVE 50 (120)
Q Consensus 37 eAIyvCCfg~d~iE 50 (120)
||||.|||...+-+
T Consensus 536 EAiy~CCWNTSYCs 549 (588)
T KOG3612|consen 536 EAIYHCCWNTSYCS 549 (588)
T ss_pred HHHHHhhccccccC
Confidence 79999999887754
No 4
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=50.93 E-value=19 Score=22.58 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=17.8
Q ss_pred HHHHhhcCCCChHHHHHHHH
Q 037543 59 TILRAVFPTVEQPEIERIVK 78 (120)
Q Consensus 59 ~mL~aVFPsV~~~eIer~V~ 78 (120)
-||.-|||+-.++.+|.++.
T Consensus 6 diL~rvFP~~kr~~Le~iL~ 25 (39)
T PF03474_consen 6 DILTRVFPHQKRSVLELILQ 25 (39)
T ss_pred HHHHHHCCCCChHHHHHHHH
Confidence 47899999999999998875
No 5
>PF11247 DUF2675: Protein of unknown function (DUF2675) ; InterPro: IPR022611 Members in this family of proteins include Bacteriophage T7 gene 5.5; they have no known function.
Probab=36.74 E-value=11 Score=27.82 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=25.6
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhhcCCC
Q 037543 62 RAVFPTVEQPEIERIVKDKARKVAEGSD 89 (120)
Q Consensus 62 ~aVFPsV~~~eIer~V~~kakkva~g~~ 89 (120)
.||+||-+..++..-+-+-|++|.+|+.
T Consensus 14 tav~~se~e~~~~e~ll~Lak~v~~GE~ 41 (98)
T PF11247_consen 14 TAVIDSEQEEEFEEDLLELAKKVGAGEK 41 (98)
T ss_pred EEEeCHHHHHHHHHHHHHHHhhcCCccc
Confidence 5789999999999999999999999987
No 6
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=32.79 E-value=89 Score=25.11 Aligned_cols=79 Identities=18% Similarity=0.320 Sum_probs=27.5
Q ss_pred chHhhHHHHhhhHHhhhcCC-ccchh---hhHHHHHHHHHhhcC-----CCChHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 037543 27 PMAIRAEKALEAIYVCCFGK-ELVEE---EDERLLVTILRAVFP-----TVEQPEIERIVKDKARKVAEGSDETNVPESK 97 (120)
Q Consensus 27 PME~RaeKALeAIyvCCfg~-d~iEe---EDe~LL~~mL~aVFP-----sV~~~eIer~V~~kakkva~g~~~~~~~~~k 97 (120)
...-.+.++|+.+=..-=.. +.+.. .++.+|..||..+.- ..+...+..++..+-.+.
T Consensus 69 ~F~~~I~~TL~~L~es~~~~~~~~~~~~~~~dd~l~~ll~~m~~~~~~~~~~~~~~~~~l~~mm~qL------------- 135 (248)
T PF04614_consen 69 SFQSTISETLERLKESGDNADAAAAEDSSNSDDMLAQLLKQMGGGGDGGGGGDEDFDKMLQGMMQQL------------- 135 (248)
T ss_dssp --------------------------------------------------------HHHHHHHHHHH-------------
T ss_pred hHHHHHHHHHHHHHhCcccccccccccccCCHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHh-------------
Confidence 34445666666665532110 11111 135578888888876 457788888888888876
Q ss_pred CCCHHHHHHhhhhH-----HHhhhccC
Q 037543 98 PLPKEAVKQQMKDL-----EFLKQNSE 119 (120)
Q Consensus 98 ~lskEav~~QmKDl-----~fLkQns~ 119 (120)
+|||..-.=||+| .||..|+.
T Consensus 136 -~SKevLYePmKel~~kyP~wL~~n~~ 161 (248)
T PF04614_consen 136 -LSKEVLYEPMKELRDKYPEWLEENKS 161 (248)
T ss_dssp -TSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred -ccHhhhhhhHHHHHHHhHHHHHhCcC
Confidence 8999998889988 59999874
No 7
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=31.28 E-value=22 Score=22.41 Aligned_cols=10 Identities=40% Similarity=1.185 Sum_probs=7.7
Q ss_pred HHhhhcCCcc
Q 037543 39 IYVCCFGKEL 48 (120)
Q Consensus 39 IyvCCfg~d~ 48 (120)
+|.||+.++.
T Consensus 25 ~YaCcykk~~ 34 (38)
T PF02439_consen 25 YYACCYKKHR 34 (38)
T ss_pred HHHHHHcccc
Confidence 5889998764
No 8
>PF13099 DUF3944: Domain of unknown function (DUF3944)
Probab=30.79 E-value=17 Score=22.40 Aligned_cols=10 Identities=60% Similarity=0.836 Sum_probs=8.3
Q ss_pred hhHHHhhhcc
Q 037543 109 KDLEFLKQNS 118 (120)
Q Consensus 109 KDl~fLkQns 118 (120)
.||+||++-|
T Consensus 5 ~DLeFL~~cs 14 (35)
T PF13099_consen 5 SDLEFLAECS 14 (35)
T ss_pred cchHHHHHCC
Confidence 5999999865
No 9
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=30.14 E-value=1.2e+02 Score=19.14 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=17.7
Q ss_pred hcCCCChHHHHHHHHHHHHHh
Q 037543 64 VFPTVEQPEIERIVKDKARKV 84 (120)
Q Consensus 64 VFPsV~~~eIer~V~~kakkv 84 (120)
.-|-.+.+||.+++++-++..
T Consensus 49 ~~~PL~~~Ev~~i~kSi~k~~ 69 (71)
T PF08708_consen 49 FSPPLPESEVKAIAKSIAKWT 69 (71)
T ss_pred cCCCCCHHHHHHHHHHHHHhc
Confidence 368899999999999988753
No 10
>PF10472 CReP_N: eIF2-alpha phosphatase phosphorylation constitutive repressor; InterPro: IPR019512 This entry represents the conserved N-terminal domain of the regulatory subunit (15B) of protein phosphatase 1 (also known as CReP, or the constitutive repressor of eIF2alpha phosphorylation). The CReP catalytic subunit functions in the dephosphorylation of eIF2-alpha under basal conditions in the absence of stress. In response to translation inhibition, there is reduced synthesis of the labile CReP that contributes to elevated levels of eIF2-alpha phosphorylation []. The C terminus, family PP1c, is shared with the apoptosis-associated protein Gadd34 and herpes simplex virus [].
Probab=26.94 E-value=43 Score=30.02 Aligned_cols=22 Identities=50% Similarity=0.717 Sum_probs=17.3
Q ss_pred CCCCHH----HHHHhhhhHHHhhhcc
Q 037543 97 KPLPKE----AVKQQMKDLEFLKQNS 118 (120)
Q Consensus 97 k~lskE----av~~QmKDl~fLkQns 118 (120)
-|||+| .--+.||-|+||||-+
T Consensus 283 PPlS~EGLPEIHHlRMKRLEFLQQa~ 308 (411)
T PF10472_consen 283 PPLSREGLPEIHHLRMKRLEFLQQAS 308 (411)
T ss_pred CCCCccCchhHHHHHHHHHHHHHhhc
Confidence 466654 5678999999999975
No 11
>PF11103 DUF2887: Protein of unknown function (DUF2887); InterPro: IPR022573 This bacterial group of proteins has no known function.
Probab=24.70 E-value=83 Score=25.17 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.3
Q ss_pred HHHHHHHHhhcCCCChHHHHHH
Q 037543 55 RLLVTILRAVFPTVEQPEIERI 76 (120)
Q Consensus 55 ~LL~~mL~aVFPsV~~~eIer~ 76 (120)
.|+.++|-.=||...++||+.|
T Consensus 178 eLIEtIlvyKfp~lSreEIeaM 199 (200)
T PF11103_consen 178 ELIETILVYKFPQLSREEIEAM 199 (200)
T ss_pred HHHHHHHHHHccccCHHHHHHh
Confidence 5888999999999999999987
No 12
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=23.22 E-value=1.2e+02 Score=22.46 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCHHHHHH
Q 037543 54 ERLLVTILRAVFPTVEQPEIERIVKDKARKVAEGSDETNVPESKPLPKEAVKQ 106 (120)
Q Consensus 54 e~LL~~mL~aVFPsV~~~eIer~V~~kakkva~g~~~~~~~~~k~lskEav~~ 106 (120)
..||.-++..+=|.....+|..|+..|-.--.+-++|+.+-.+ .||||--+.
T Consensus 35 V~LLdNL~~YI~~~Ms~edi~~II~nMr~DYEdRVDDyiIknA-ElsKeRRei 86 (95)
T PF04363_consen 35 VLLLDNLSDYIKPDMSIEDIRAIIENMRSDYEDRVDDYIIKNA-ELSKERREI 86 (95)
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhHHHHhHHHHHHhhH-HHhHHHHHH
Confidence 4589999999999999999999999999888888888877664 689986543
No 13
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=23.06 E-value=1.8e+02 Score=22.88 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=27.2
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcC
Q 037543 55 RLLVTILRAVFPTVEQPEIERIVKDKARKVAEG 87 (120)
Q Consensus 55 ~LL~~mL~aVFPsV~~~eIer~V~~kakkva~g 87 (120)
++..+=|..+||....+|+++|+++.-...+..
T Consensus 44 ~v~~~NL~~~fP~~s~~e~~~i~~~~~~~~~~~ 76 (295)
T PRK05645 44 EVVRINLSKCFPELSPAELEKLVGQSLMDIGKT 76 (295)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 667777889999999999999999887755543
No 14
>PF09275 Pertus-S4-tox: Pertussis toxin S4 subunit; InterPro: IPR015355 Members of this family of Bordetella pertussis toxins adopt a structure consisting of an OB fold, with a closed or partly opened beta-barrel in a Greek-key topology []. ; PDB: 1PTO_D 1PRT_K 1BCP_D.
Probab=22.63 E-value=34 Score=25.52 Aligned_cols=28 Identities=39% Similarity=0.649 Sum_probs=18.1
Q ss_pred hhHHhhhcCCccchhhhHHHHHHHHHhhc
Q 037543 37 EAIYVCCFGKELVEEEDERLLVTILRAVF 65 (120)
Q Consensus 37 eAIyvCCfg~d~iEeEDe~LL~~mL~aVF 65 (120)
||-.--|||+|.--.-. .-+..||.|||
T Consensus 45 dahvpfcfgkdlkrpgs-spmevmlravf 72 (110)
T PF09275_consen 45 DAHVPFCFGKDLKRPGS-SPMEVMLRAVF 72 (110)
T ss_dssp GGSEEEEEEEETTS-S---HHHHHHHHHH
T ss_pred CCcccceeccccCCCCC-CcHHHHHHHHH
Confidence 44445699999755433 34578999998
No 15
>PRK08727 hypothetical protein; Validated
Probab=22.23 E-value=1e+02 Score=23.64 Aligned_cols=38 Identities=11% Similarity=0.201 Sum_probs=30.2
Q ss_pred CccchhhhHHHHHH---HHHhhcCCCChHHHHHHHHHHHHH
Q 037543 46 KELVEEEDERLLVT---ILRAVFPTVEQPEIERIVKDKARK 83 (120)
Q Consensus 46 ~d~iEeEDe~LL~~---mL~aVFPsV~~~eIer~V~~kakk 83 (120)
-+.+..-++.|.+. .+...||..+..++..++..+|++
T Consensus 137 p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 137 PDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred hhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 33444557888888 556689999999999999998887
No 16
>PF10978 DUF2785: Protein of unknown function (DUF2785); InterPro: IPR021247 Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function.
Probab=21.84 E-value=3.6e+02 Score=20.35 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=45.6
Q ss_pred hHHHHhhhHHhhhc--CCccchhhhHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHhhcCCC
Q 037543 31 RAEKALEAIYVCCF--GKELVEEEDERLLVTILRAVFPT-VEQPEIERIVKDKARKVAEGSD 89 (120)
Q Consensus 31 RaeKALeAIyvCCf--g~d~iEeEDe~LL~~mL~aVFPs-V~~~eIer~V~~kakkva~g~~ 89 (120)
.....|++|..|-. ..-.+.+||+||-..++..+.-. +..+++-..++.-.........
T Consensus 91 ~~~~lL~~i~~~~~~~~~~~~~~EdeRLa~~~~~~l~~~~l~~~~~~~wl~~~~~~l~~~~~ 152 (175)
T PF10978_consen 91 DKIELLAAILEKYKRLSTPFIDGEDERLATALIELLNRNKLYQEELLSWLKSWRQDLPTQRP 152 (175)
T ss_pred HHHHHHHHHHHHHcCCCcceeCCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhccc
Confidence 34566888865544 34568999999999999999988 9999999999988666554433
No 17
>COG4920 Predicted membrane protein [Function unknown]
Probab=20.73 E-value=54 Score=27.75 Aligned_cols=19 Identities=37% Similarity=0.324 Sum_probs=16.6
Q ss_pred CHHHHHHhhhhHHHhhhcc
Q 037543 100 PKEAVKQQMKDLEFLKQNS 118 (120)
Q Consensus 100 skEav~~QmKDl~fLkQns 118 (120)
-|+|.++||||=+.||..+
T Consensus 75 EK~a~eL~~kDee~l~E~~ 93 (249)
T COG4920 75 EKEANELLEKDEELLNEYK 93 (249)
T ss_pred hhhhHHHHHhhHHHHHHHH
Confidence 5899999999999998764
No 18
>PRK05423 hypothetical protein; Provisional
Probab=20.58 E-value=1.1e+02 Score=22.95 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCHHHHHH
Q 037543 54 ERLLVTILRAVFPTVEQPEIERIVKDKARKVAEGSDETNVPESKPLPKEAVKQ 106 (120)
Q Consensus 54 e~LL~~mL~aVFPsV~~~eIer~V~~kakkva~g~~~~~~~~~k~lskEav~~ 106 (120)
..||.-++-.+=|....++|..|++.|-.--.+-++|+.+-. --||||--+.
T Consensus 42 VlLLdNL~~YIk~~Ms~e~i~~II~nMr~DYEdRVDDyiIkn-AElSKeRRei 93 (104)
T PRK05423 42 VLLLDNLSDYIKPGMSIEEIQGIIANMKSDYEDRVDDYIIKN-AELSKERREI 93 (104)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHhhHHHHHhh-HHhhHHHHHH
Confidence 458899999999999999999999999988888888887655 4589986543
No 19
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=20.40 E-value=30 Score=22.37 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=12.2
Q ss_pred hHHhhhcCCccchhh
Q 037543 38 AIYVCCFGKELVEEE 52 (120)
Q Consensus 38 AIyvCCfg~d~iEeE 52 (120)
.|=.||-|..++++-
T Consensus 23 gIDfCCgG~~~L~eA 37 (56)
T PF04405_consen 23 GIDFCCGGNRSLEEA 37 (56)
T ss_pred CCcccCCCCchHHHH
Confidence 577899999988763
Done!