Query 037543
Match_columns 120
No_of_seqs 16 out of 18
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 23:06:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037543.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037543hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgl_A TOLL-interacting protei 80.8 1.6 5.3E-05 27.7 3.2 30 45-78 4-33 (59)
2 1otr_A Protein CUE2; protein-p 79.5 2.4 8.3E-05 26.3 3.8 24 51-78 5-28 (49)
3 1p3q_Q VPS9P, vacuolar protein 49.1 12 0.00041 23.8 2.5 20 61-80 19-38 (54)
4 2dhy_A CUE domain-containing p 47.8 15 0.0005 23.9 2.8 20 60-79 24-43 (67)
5 1mz9_A Cartilage oligomeric ma 36.4 23 0.00078 21.1 2.2 16 101-116 22-37 (45)
6 1ucr_A Protein DSVD; dissimila 27.1 59 0.002 22.2 3.3 22 61-82 27-48 (78)
7 4ham_A LMO2241 protein; struct 23.2 1.5E+02 0.0052 19.5 4.8 30 60-89 102-131 (134)
8 2acf_A Replicase polyprotein 1 22.8 43 0.0015 24.5 2.1 37 26-70 140-180 (182)
9 1kdx_A CBP; complex (transcrip 19.8 62 0.0021 21.8 2.2 30 55-85 17-51 (81)
10 2euc_A Hypothetical protein YF 19.0 62 0.0021 24.0 2.2 27 48-74 64-90 (130)
No 1
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=80.77 E-value=1.6 Score=27.72 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=24.8
Q ss_pred CCccchhhhHHHHHHHHHhhcCCCChHHHHHHHH
Q 037543 45 GKELVEEEDERLLVTILRAVFPTVEQPEIERIVK 78 (120)
Q Consensus 45 g~d~iEeEDe~LL~~mL~aVFPsV~~~eIer~V~ 78 (120)
|...+.+|+...|..| ||+++..-|+....
T Consensus 4 ~~~~~~ee~l~~L~em----FP~ld~~~I~~vL~ 33 (59)
T 1wgl_A 4 GSSGCSEEDLKAIQDM----FPNMDQEVIRSVLE 33 (59)
T ss_dssp CSSSSCHHHHHHHHHH----CSSSCHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHH----CCCCCHHHHHHHHH
Confidence 6677888888877665 99999999988764
No 2
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=79.54 E-value=2.4 Score=26.27 Aligned_cols=24 Identities=17% Similarity=0.470 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHhhcCCCChHHHHHHHH
Q 037543 51 EEDERLLVTILRAVFPTVEQPEIERIVK 78 (120)
Q Consensus 51 eEDe~LL~~mL~aVFPsV~~~eIer~V~ 78 (120)
+++.++|.-| ||++...+|.+..+
T Consensus 5 e~~v~~L~EM----FP~~~~~~ik~~L~ 28 (49)
T 1otr_A 5 ESKLSILMDM----FPAISKSKLQVHLL 28 (49)
T ss_dssp HHHHHHHHHH----CSSSCHHHHHHHHH
T ss_pred HHHHHHHHHH----CCCCCHHHHHHHHH
Confidence 5667776665 99999999999875
No 3
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=49.15 E-value=12 Score=23.76 Aligned_cols=20 Identities=25% Similarity=0.512 Sum_probs=17.2
Q ss_pred HHhhcCCCChHHHHHHHHHH
Q 037543 61 LRAVFPTVEQPEIERIVKDK 80 (120)
Q Consensus 61 L~aVFPsV~~~eIer~V~~k 80 (120)
|...||++++.-|+..+..+
T Consensus 19 L~~MFP~lD~evI~~Vl~a~ 38 (54)
T 1p3q_Q 19 LQNMFPDMDPSLIEDVCIAA 38 (54)
T ss_dssp HHHHSTTSCHHHHHHHHHHS
T ss_pred HHHHcccCCHHHHHHHHHHc
Confidence 56789999999999988765
No 4
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.83 E-value=15 Score=23.89 Aligned_cols=20 Identities=20% Similarity=0.502 Sum_probs=16.4
Q ss_pred HHHhhcCCCChHHHHHHHHH
Q 037543 60 ILRAVFPTVEQPEIERIVKD 79 (120)
Q Consensus 60 mL~aVFPsV~~~eIer~V~~ 79 (120)
-|...||+++...|+..+..
T Consensus 24 ~L~~MFP~lD~~vI~~vL~a 43 (67)
T 2dhy_A 24 DFKTMFPNMDYDIIECVLRA 43 (67)
T ss_dssp HHHHHCSSSCHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHH
Confidence 36667999999999988754
No 5
>1mz9_A Cartilage oligomeric matrix protein; pentameric coiled-coil domain, protein binding; HET: VDY; 1.70A {Mus musculus} SCOP: h.1.7.1 PDB: 1vdf_A 1fbm_A
Probab=36.39 E-value=23 Score=21.12 Aligned_cols=16 Identities=44% Similarity=0.835 Sum_probs=13.3
Q ss_pred HHHHHHhhhhHHHhhh
Q 037543 101 KEAVKQQMKDLEFLKQ 116 (120)
Q Consensus 101 kEav~~QmKDl~fLkQ 116 (120)
++-..+|+|+..||+.
T Consensus 22 ~~~~~qqvkE~~~lr~ 37 (45)
T 1mz9_A 22 RELLRQQVKEITFLKN 37 (45)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 4567899999999985
No 6
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=27.06 E-value=59 Score=22.20 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=19.0
Q ss_pred HHhhcCCCChHHHHHHHHHHHH
Q 037543 61 LRAVFPTVEQPEIERIVKDKAR 82 (120)
Q Consensus 61 L~aVFPsV~~~eIer~V~~kak 82 (120)
+...||....++|..+|.+.+.
T Consensus 27 ~~k~~P~~k~r~vKK~~~~LV~ 48 (78)
T 1ucr_A 27 FTDLFPDMKQREVKKILTALVN 48 (78)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHccccCHHHHHHHHHHHHh
Confidence 4458999999999999999764
No 7
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=23.18 E-value=1.5e+02 Score=19.53 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=23.3
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhhcCCC
Q 037543 60 ILRAVFPTVEQPEIERIVKDKARKVAEGSD 89 (120)
Q Consensus 60 mL~aVFPsV~~~eIer~V~~kakkva~g~~ 89 (120)
+..+..-.+..++|.+++.+..+.+..|..
T Consensus 102 ~~~~~~~~~~~eel~~l~~~~~~~~~~gd~ 131 (134)
T 4ham_A 102 ILDLVYLGVNIEEIHKLADEYSQDIIGGDV 131 (134)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 344556678899999999998888877764
No 8
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=22.83 E-value=43 Score=24.55 Aligned_cols=37 Identities=8% Similarity=0.196 Sum_probs=23.7
Q ss_pred cchHhhHHHHhhh----HHhhhcCCccchhhhHHHHHHHHHhhcCCCCh
Q 037543 26 IPMAIRAEKALEA----IYVCCFGKELVEEEDERLLVTILRAVFPTVEQ 70 (120)
Q Consensus 26 IPME~RaeKALeA----IyvCCfg~d~iEeEDe~LL~~mL~aVFPsV~~ 70 (120)
.|.+.=++-|+++ |+.||| |+++....|...||.++.
T Consensus 140 ~p~~~aa~i~~~~v~~~V~~v~~--------d~~~y~~~l~~~~p~~~~ 180 (182)
T 2acf_A 140 AKPLQSLQVCVQTVRTQVYIAVN--------DKALYEQVVMDYLDNLKP 180 (182)
T ss_dssp CCHHHHHHHHHHHCCSEEEEEES--------CHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHhCcEEEEEC--------CHHHHHHHHHHhCCCCCC
Confidence 5677777777777 788888 333777788889997654
No 9
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=19.80 E-value=62 Score=21.78 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=19.8
Q ss_pred HHHHHHHHhhcCCCChHH-----HHHHHHHHHHHhh
Q 037543 55 RLLVTILRAVFPTVEQPE-----IERIVKDKARKVA 85 (120)
Q Consensus 55 ~LL~~mL~aVFPsV~~~e-----Ier~V~~kakkva 85 (120)
-|...+..|+||+.+..+ +.. +.+.|++|.
T Consensus 17 hlv~Klv~aI~P~pdp~a~~d~rm~~-l~~yArkvE 51 (81)
T 1kdx_A 17 HLVHKLVQAIFPTPDPAALKDRRMEN-LVAYAKKVE 51 (81)
T ss_dssp HHHHHHHHHHSCCSSGGGGGSHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChhhhhhHHHHH-HHHHHHHHH
Confidence 466789999999997553 333 345566553
No 10
>2euc_A Hypothetical protein YFMB; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus subtilis} SCOP: a.249.1.1
Probab=19.03 E-value=62 Score=23.97 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.6
Q ss_pred cchhhhHHHHHHHHHhhcCCCChHHHH
Q 037543 48 LVEEEDERLLVTILRAVFPTVEQPEIE 74 (120)
Q Consensus 48 ~iEeEDe~LL~~mL~aVFPsV~~~eIe 74 (120)
.+++|=+.+|+.-|++.||-|.+.-.+
T Consensus 64 ~~~~e~e~~LssYL~~LlpfvT~DM~~ 90 (130)
T 2euc_A 64 ALTDEIEKKLSGYLSTLLPYVTADMFE 90 (130)
T ss_dssp CSSSHHHHHHHHHHHHHGGGCCHHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999987543
Done!