Your job contains 1 sequence.
>037546
MDTGGPKKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESER
EARRLR
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 037546
(66 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q0IXR7 - symbol:Os10g0411700 "Os10g0411700 prot... 178 1.0e-13 1
UNIPROTKB|A8IKP1 - symbol:RPS28 "Ribosomal protein S28" s... 175 2.1e-13 1
UNIPROTKB|Q56JX6 - symbol:RPS28 "40S ribosomal protein S2... 174 2.7e-13 1
UNIPROTKB|P62857 - symbol:RPS28 "40S ribosomal protein S2... 174 2.7e-13 1
UNIPROTKB|Q6QAT1 - symbol:RPS28 "40S ribosomal protein S2... 174 2.7e-13 1
MGI|MGI:1859516 - symbol:Rps28 "ribosomal protein S28" sp... 174 2.7e-13 1
POMBASE|SPAC25G10.06 - symbol:rps2801 "40S ribosomal prot... 174 2.7e-13 1
POMBASE|SPCC285.15c - symbol:rps2802 "40S ribosomal prote... 174 2.7e-13 1
RGD|621046 - symbol:Rps28 "ribosomal protein S28" species... 174 2.7e-13 1
UNIPROTKB|F1NTT2 - symbol:RPS28 "Uncharacterized protein"... 173 3.4e-13 1
UNIPROTKB|Q74ZD8 - symbol:RPS28A "40S ribosomal protein S... 172 4.4e-13 1
FB|FBgn0039739 - symbol:RpS28a "Ribosomal protein S28a" s... 171 5.6e-13 1
ZFIN|ZDB-GENE-030131-2022 - symbol:rps28 "ribosomal prote... 169 9.1e-13 1
SGD|S000004254 - symbol:RPS28B "Protein component of the ... 168 1.2e-12 1
SGD|S000005693 - symbol:RPS28A "Protein component of the ... 167 1.5e-12 1
UNIPROTKB|G4MR44 - symbol:MGG_09894 "40S ribosomal protei... 162 5.0e-12 1
RGD|2323691 - symbol:LOC100359503 "ribosomal protein S28-... 162 5.0e-12 1
ASPGD|ASPL0000000338 - symbol:AN6632 species:162425 "Emer... 161 6.4e-12 1
UNIPROTKB|Q5AYJ8 - symbol:AN6632.2 "Ribosomal protein S28... 161 6.4e-12 1
TAIR|locus:2100118 - symbol:AT3G10090 "AT3G10090" species... 160 8.2e-12 1
TAIR|locus:2150610 - symbol:AT5G03850 "AT5G03850" species... 160 8.2e-12 1
TAIR|locus:2164386 - symbol:RPS28 "AT5G64140" species:370... 157 1.7e-11 1
UNIPROTKB|Q7S6W5 - symbol:rps-28 "40S ribosomal protein S... 156 2.2e-11 1
FB|FBgn0030136 - symbol:RpS28b "Ribosomal protein S28b" s... 155 2.8e-11 1
WB|WBGene00004497 - symbol:rps-28 species:6239 "Caenorhab... 150 9.4e-11 1
UNIPROTKB|Q95Y04 - symbol:rps-28 "40S ribosomal protein S... 150 9.4e-11 1
RGD|2321668 - symbol:LOC100360689 "ribosomal protein S28-... 143 5.2e-10 1
GENEDB_PFALCIPARUM|PF14_0585 - symbol:PF14_0585 "ribosoma... 139 1.4e-09 1
UNIPROTKB|Q7RH51 - symbol:PY04142 "Ribosomal protein S28e... 139 1.4e-09 1
UNIPROTKB|Q8IKL9 - symbol:PF14_0585 "40S ribosomal protei... 139 1.4e-09 1
FB|FBgn0085211 - symbol:RpS28-like "Ribosomal protein S28... 138 1.8e-09 1
RGD|1591339 - symbol:LOC685674 "similar to 40S ribosomal ... 128 2.0e-08 1
UNIPROTKB|Q234G5 - symbol:TTHERM_00105330 "Ribosomal prot... 126 3.3e-08 1
DICTYBASE|DDB_G0285597 - symbol:rps28 "40S ribosomal prot... 117 2.9e-07 1
UNIPROTKB|Q8TQL8 - symbol:rps28e "30S ribosomal protein S... 109 2.1e-06 1
>UNIPROTKB|Q0IXR7 [details] [associations]
symbol:Os10g0411700 "Os10g0411700 protein" species:39947
"Oryza sativa Japonica Group" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006407 "rRNA export from nucleus"
evidence=ISS] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS] InterPro:IPR000289 Pfam:PF01200 ProDom:PD005541
PROSITE:PS00961 GO:GO:0005886 GO:GO:0005618 GO:GO:0006412
EMBL:AP008209 GO:GO:0003735 EMBL:AP008216 EMBL:CM000147
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0022627
GO:GO:0006407 KO:K02979 OMA:QVKVEFI ProtClustDB:CLSN2685181
PANTHER:PTHR10769 RefSeq:NP_001049079.2 RefSeq:NP_001064584.1
UniGene:Os.79049 UniGene:Os.9876 STRING:Q0IXR7
EnsemblPlants:LOC_Os10g27174.1 GeneID:4331742 GeneID:4348607
KEGG:osa:4331742 KEGG:osa:4348607 Uniprot:Q0IXR7
Length = 65
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 38/52 (73%), Positives = 42/52 (80%)
Query: 1 MDTGGPKKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
MDT K A V+KV+GRTGSRGQVTQVRV+F+DD R I RNVKGPVR GDI
Sbjct: 1 MDTQ-VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51
>UNIPROTKB|A8IKP1 [details] [associations]
symbol:RPS28 "Ribosomal protein S28" species:3055
"Chlamydomonas reinhardtii" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006407 "rRNA export from nucleus"
evidence=ISS] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS] InterPro:IPR000289 Pfam:PF01200 ProDom:PD005541
PROSITE:PS00961 GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0022627 GO:GO:0006407
eggNOG:COG2053 KO:K02979 OMA:QVKVEFI ProtClustDB:CLSN2685181
PANTHER:PTHR10769 EMBL:DS496118 RefSeq:XP_001691054.1
UniGene:Cre.8716 ProteinModelPortal:A8IKP1 SMR:A8IKP1 STRING:A8IKP1
PRIDE:A8IKP1 ProMEX:A8IKP1 GeneID:5716568
KEGG:cre:CHLREDRAFT_144646 Uniprot:A8IKP1
Length = 65
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 36/46 (78%), Positives = 39/46 (84%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
K A V+KVIGRTGSRGQVTQVRV+F+DD R I RNVKGPVR GDI
Sbjct: 6 KLAIVMKVIGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51
>UNIPROTKB|Q56JX6 [details] [associations]
symbol:RPS28 "40S ribosomal protein S28" species:9913 "Bos
taurus" [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS] [GO:0006407 "rRNA export from nucleus" evidence=ISS]
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000289 Pfam:PF01200
ProDom:PD005541 PROSITE:PS00961 GO:GO:0006412 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364
GO:GO:0042274 GO:GO:0022627 GO:GO:0006407 eggNOG:COG2053 KO:K02979
OMA:QVKVEFI PANTHER:PTHR10769 GeneTree:ENSGT00390000003580
EMBL:AY911353 EMBL:BC102565 IPI:IPI00716116 RefSeq:NP_001020487.1
UniGene:Bt.22772 ProteinModelPortal:Q56JX6 SMR:Q56JX6 STRING:Q56JX6
PRIDE:Q56JX6 Ensembl:ENSBTAT00000003201 GeneID:282877
KEGG:bta:282877 CTD:6234 HOVERGEN:HBG000219 InParanoid:Q56JX6
OrthoDB:EOG4HT8V0 NextBio:20806405 Uniprot:Q56JX6
Length = 69
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 38/55 (69%), Positives = 42/55 (76%)
Query: 1 MDTGG--P-KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
MDT P K A V KV+GRTGS+GQ TQVRV+FMDDT R I RNVKGPVR GD+
Sbjct: 1 MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55
>UNIPROTKB|P62857 [details] [associations]
symbol:RPS28 "40S ribosomal protein S28" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0015935 "small ribosomal subunit" evidence=IDA]
[GO:0006412 "translation" evidence=IC;TAS] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0042274 "ribosomal small subunit
biogenesis" evidence=IMP] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006413 "translational
initiation" evidence=TAS] [GO:0006414 "translational elongation"
evidence=TAS] [GO:0006415 "translational termination" evidence=TAS]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000289 Pfam:PF01200 ProDom:PD005541 PROSITE:PS00961
Reactome:REACT_116125 GO:GO:0000184 GO:GO:0006413 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364
GO:GO:0042274 GO:GO:0006415 GO:GO:0006414 GO:GO:0022627
Reactome:REACT_1762 GO:GO:0006614 GO:GO:0019083 eggNOG:COG2053
KO:K02979 OMA:QVKVEFI PANTHER:PTHR10769 CTD:6234 HOVERGEN:HBG000219
OrthoDB:EOG4HT8V0 EMBL:L05091 EMBL:U58682 EMBL:AB061846
EMBL:CR457055 EMBL:BC000354 EMBL:BC021239 EMBL:BC070217
EMBL:BC070218 EMBL:AB007164 IPI:IPI00719622 PIR:S68914
RefSeq:NP_001022.1 UniGene:Hs.153177 UniGene:Hs.740394
ProteinModelPortal:P62857 SMR:P62857 IntAct:P62857 STRING:P62857
PhosphoSite:P62857 DMDM:51338652 PaxDb:P62857 PRIDE:P62857
DNASU:6234 Ensembl:ENST00000417088 GeneID:6234 KEGG:hsa:6234
UCSC:uc002mjn.3 GeneCards:GC19P008386 HGNC:HGNC:10418 HPA:HPA047132
MIM:603685 neXtProt:NX_P62857 PharmGKB:PA34825 PhylomeDB:P62857
GenomeRNAi:6234 NextBio:24201 ArrayExpress:P62857 Bgee:P62857
CleanEx:HS_RPS28 Genevestigator:P62857 GermOnline:ENSG00000197303
Uniprot:P62857
Length = 69
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 38/55 (69%), Positives = 42/55 (76%)
Query: 1 MDTGG--P-KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
MDT P K A V KV+GRTGS+GQ TQVRV+FMDDT R I RNVKGPVR GD+
Sbjct: 1 MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55
>UNIPROTKB|Q6QAT1 [details] [associations]
symbol:RPS28 "40S ribosomal protein S28" species:9823 "Sus
scrofa" [GO:0042274 "ribosomal small subunit biogenesis"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000289
Pfam:PF01200 ProDom:PD005541 PROSITE:PS00961 GO:GO:0006412
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006364 GO:GO:0042274 GO:GO:0022627 eggNOG:COG2053 KO:K02979
OMA:QVKVEFI PANTHER:PTHR10769 GeneTree:ENSGT00390000003580 CTD:6234
HOVERGEN:HBG000219 OrthoDB:EOG4HT8V0 EMBL:AY550038
RefSeq:NP_001001587.1 UniGene:Ssc.947 ProteinModelPortal:Q6QAT1
SMR:Q6QAT1 STRING:Q6QAT1 PRIDE:Q6QAT1 Ensembl:ENSSSCT00000014851
GeneID:414420 KEGG:ssc:414420 Uniprot:Q6QAT1
Length = 69
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 38/55 (69%), Positives = 42/55 (76%)
Query: 1 MDTGG--P-KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
MDT P K A V KV+GRTGS+GQ TQVRV+FMDDT R I RNVKGPVR GD+
Sbjct: 1 MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55
>MGI|MGI:1859516 [details] [associations]
symbol:Rps28 "ribosomal protein S28" species:10090 "Mus
musculus" [GO:0003735 "structural constituent of ribosome"
evidence=IBA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0006407 "rRNA export from nucleus" evidence=IBA]
[GO:0006412 "translation" evidence=IEA] [GO:0015935 "small
ribosomal subunit" evidence=ISO] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=ISO;IBA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042274 "ribosomal small subunit
biogenesis" evidence=ISO] InterPro:IPR000289 Pfam:PF01200
ProDom:PD005541 PROSITE:PS00961 MGI:MGI:1859516 GO:GO:0006412
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AF528162 EMBL:AF110520 GO:GO:0022627 GO:GO:0006407
eggNOG:COG2053 KO:K02979 OMA:QVKVEFI PANTHER:PTHR10769 CTD:6234
HOVERGEN:HBG000219 OrthoDB:EOG4HT8V0 EMBL:U11248 EMBL:AK002919
EMBL:BC010987 EMBL:BC090982 IPI:IPI00137736 RefSeq:NP_058540.1
UniGene:Mm.352374 UniGene:Mm.353967 UniGene:Mm.371603
UniGene:Mm.393918 ProteinModelPortal:P62858 SMR:P62858
IntAct:P62858 STRING:P62858 PhosphoSite:P62858 PaxDb:P62858
PRIDE:P62858 Ensembl:ENSMUST00000087342 Ensembl:ENSMUST00000166693
Ensembl:ENSMUST00000173019 Ensembl:ENSMUST00000173844 GeneID:54127
KEGG:mmu:54127 InParanoid:P62858 NextBio:310925 Bgee:P62858
CleanEx:MM_RPS28 Genevestigator:P62858
GermOnline:ENSMUSG00000072940 Uniprot:P62858
Length = 69
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 38/55 (69%), Positives = 42/55 (76%)
Query: 1 MDTGG--P-KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
MDT P K A V KV+GRTGS+GQ TQVRV+FMDDT R I RNVKGPVR GD+
Sbjct: 1 MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55
>POMBASE|SPAC25G10.06 [details] [associations]
symbol:rps2801 "40S ribosomal protein S28 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006412 "translation" evidence=ISO] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISO] [GO:0042254 "ribosome
biogenesis" evidence=ISO] InterPro:IPR000289 Pfam:PF01200
ProDom:PD005541 PROSITE:PS00961 PomBase:SPCC285.15c
PomBase:SPAC25G10.06 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003735 GO:GO:0002181 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0000056 GO:GO:0000028 GO:GO:0030490
GO:GO:0022627 GO:GO:0000469 eggNOG:COG2053 KO:K02979 OMA:QVKVEFI
PANTHER:PTHR10769 HOGENOM:HOG000224552 OrthoDB:EOG4STWFH
EMBL:D85030 PIR:T38377 PIR:T45114 RefSeq:NP_588343.1
RefSeq:NP_594526.1 ProteinModelPortal:Q10421 STRING:Q10421
PRIDE:Q10421 EnsemblFungi:SPAC25G10.06.1 EnsemblFungi:SPCC285.15c.1
GeneID:2539085 GeneID:2542751 KEGG:spo:SPAC25G10.06
KEGG:spo:SPCC285.15c NextBio:20800257 Uniprot:Q10421
Length = 68
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 36/46 (78%), Positives = 38/46 (82%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
K A VIKV+GRTGSRG VTQVRV+FMDDT R I RNVKGPVR DI
Sbjct: 9 KLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDI 54
>POMBASE|SPCC285.15c [details] [associations]
symbol:rps2802 "40S ribosomal protein S28, Rps2802"
species:4896 "Schizosaccharomyces pombe" [GO:0000028 "ribosomal
small subunit assembly" evidence=IMP] [GO:0000056 "ribosomal small
subunit export from nucleus" evidence=IMP] [GO:0000469 "cleavage
involved in rRNA processing" evidence=IDA] [GO:0002181 "cytoplasmic
translation" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISO] [GO:0030490 "maturation of SSU-rRNA"
evidence=IMP] InterPro:IPR000289 Pfam:PF01200 ProDom:PD005541
PROSITE:PS00961 PomBase:SPCC285.15c PomBase:SPAC25G10.06
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003735 GO:GO:0002181
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000056
GO:GO:0000028 GO:GO:0030490 GO:GO:0022627 GO:GO:0000469
eggNOG:COG2053 KO:K02979 OMA:QVKVEFI PANTHER:PTHR10769
HOGENOM:HOG000224552 OrthoDB:EOG4STWFH EMBL:D85030 PIR:T38377
PIR:T45114 RefSeq:NP_588343.1 RefSeq:NP_594526.1
ProteinModelPortal:Q10421 STRING:Q10421 PRIDE:Q10421
EnsemblFungi:SPAC25G10.06.1 EnsemblFungi:SPCC285.15c.1
GeneID:2539085 GeneID:2542751 KEGG:spo:SPAC25G10.06
KEGG:spo:SPCC285.15c NextBio:20800257 Uniprot:Q10421
Length = 68
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 36/46 (78%), Positives = 38/46 (82%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
K A VIKV+GRTGSRG VTQVRV+FMDDT R I RNVKGPVR DI
Sbjct: 9 KLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDI 54
>RGD|621046 [details] [associations]
symbol:Rps28 "ribosomal protein S28" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=TAS] [GO:0003735
"structural constituent of ribosome" evidence=IBA] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0006407 "rRNA export from
nucleus" evidence=IBA] [GO:0006412 "translation" evidence=IEA]
[GO:0015935 "small ribosomal subunit" evidence=ISO] [GO:0022627
"cytosolic small ribosomal subunit" evidence=ISO;IDA] [GO:0042274
"ribosomal small subunit biogenesis" evidence=ISO]
InterPro:IPR000289 Pfam:PF01200 ProDom:PD005541 PROSITE:PS00961
RGD:621046 GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364
GO:GO:0042274 GO:GO:0022627 GO:GO:0006407 eggNOG:COG2053 KO:K02979
OMA:QVKVEFI PANTHER:PTHR10769 GeneTree:ENSGT00390000003580 CTD:6234
HOVERGEN:HBG000219 OrthoDB:EOG4HT8V0 EMBL:X59277 IPI:IPI00359978
PIR:JQ1170 RefSeq:NP_001099200.1 UniGene:Rn.6005
ProteinModelPortal:P62859 SMR:P62859 IntAct:P62859 STRING:P62859
PRIDE:P62859 Ensembl:ENSRNOT00000045955 Ensembl:ENSRNOT00000068323
GeneID:691531 KEGG:rno:691531 UCSC:RGD:621046 InParanoid:P62859
NextBio:743246 Genevestigator:P62859 GermOnline:ENSRNOG00000033709
Uniprot:P62859
Length = 69
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 38/55 (69%), Positives = 42/55 (76%)
Query: 1 MDTGG--P-KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
MDT P K A V KV+GRTGS+GQ TQVRV+FMDDT R I RNVKGPVR GD+
Sbjct: 1 MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55
>UNIPROTKB|F1NTT2 [details] [associations]
symbol:RPS28 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=IEA] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IEA] InterPro:IPR000289 Pfam:PF01200
ProDom:PD005541 PROSITE:PS00961 GO:GO:0006412 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364
GO:GO:0042274 GO:GO:0022627 OMA:QVKVEFI PANTHER:PTHR10769
GeneTree:ENSGT00390000003580 EMBL:AADN02063537 IPI:IPI00600129
UniGene:Gga.39035 Ensembl:ENSGALT00000041279 Uniprot:F1NTT2
Length = 68
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 34/46 (73%), Positives = 38/46 (82%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
K A V KV+GRTGS+GQ TQVRV+FMDDT R I RNVKGPVR GD+
Sbjct: 9 KLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 54
>UNIPROTKB|Q74ZD8 [details] [associations]
symbol:RPS28A "40S ribosomal protein S28" species:284811
"Ashbya gossypii ATCC 10895" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006407 "rRNA export from nucleus"
evidence=ISS] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS] InterPro:IPR000289 Pfam:PF01200 ProDom:PD005541
PROSITE:PS00961 GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AE016820
GenomeReviews:AE016820_GR GO:GO:0022627 GO:GO:0006407
eggNOG:COG2053 KO:K02979 OMA:QVKVEFI PANTHER:PTHR10769
HOGENOM:HOG000224552 OrthoDB:EOG4STWFH RefSeq:NP_986927.1
ProteinModelPortal:Q74ZD8 STRING:Q74ZD8 EnsemblFungi:AAS54751
GeneID:4623229 KEGG:ago:AGOS_AGR261W PhylomeDB:Q74ZD8
Uniprot:Q74ZD8
Length = 67
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 37/53 (69%), Positives = 41/53 (77%)
Query: 1 MDTGGPKK-ATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
MD+ P A VIKV+GRTGSRG VTQVRV+F+DDT R I RNVKGPVR DI
Sbjct: 1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLDDTSRTIVRNVKGPVRENDI 53
>FB|FBgn0039739 [details] [associations]
symbol:RpS28a "Ribosomal protein S28a" species:7227
"Drosophila melanogaster" [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS;IBA] [GO:0003735 "structural constituent of
ribosome" evidence=ISS;IBA] [GO:0006412 "translation" evidence=IEA]
[GO:0035220 "wing disc development" evidence=IMP] [GO:0006407 "rRNA
export from nucleus" evidence=IBA] InterPro:IPR000289 Pfam:PF01200
ProDom:PD005541 PROSITE:PS00961 EMBL:AE014297 GO:GO:0006412
GO:GO:0035220 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0022627 GO:GO:0006407 eggNOG:COG2053
KO:K02979 PANTHER:PTHR10769 GeneTree:ENSGT00390000003580
OrthoDB:EOG4RXWH2 HSSP:O26356 EMBL:BT100071 RefSeq:NP_651764.1
UniGene:Dm.27988 SMR:Q9VAB9 STRING:Q9VAB9
EnsemblMetazoa:FBtr0085601 GeneID:43564 KEGG:dme:Dmel_CG15527
UCSC:CG15527-RA CTD:43564 FlyBase:FBgn0039739 InParanoid:Q9VAB9
OMA:SEREARC GenomeRNAi:43564 NextBio:834574 Uniprot:Q9VAB9
Length = 64
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 32/47 (68%), Positives = 40/47 (85%)
Query: 6 PKKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
P+ A V++++GRTGS+GQ TQVRV+F+ D RQI RNVKGPVRVGDI
Sbjct: 4 PQYARVVEILGRTGSQGQCTQVRVEFLGDQSRQIIRNVKGPVRVGDI 50
>ZFIN|ZDB-GENE-030131-2022 [details] [associations]
symbol:rps28 "ribosomal protein S28" species:7955
"Danio rerio" [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA;IBA] [GO:0006412
"translation" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006407 "rRNA export from nucleus" evidence=IBA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000289 Pfam:PF01200 ProDom:PD005541 PROSITE:PS00961
ZFIN:ZDB-GENE-030131-2022 GO:GO:0006412 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0022627
GO:GO:0006407 eggNOG:COG2053 KO:K02979 OMA:QVKVEFI
PANTHER:PTHR10769 HOGENOM:HOG000224552 GeneTree:ENSGT00390000003580
CTD:6234 HOVERGEN:HBG000219 OrthoDB:EOG4HT8V0 EMBL:BC059677
IPI:IPI00503732 RefSeq:NP_998199.1 UniGene:Dr.104504
ProteinModelPortal:Q6PBK3 STRING:Q6PBK3 PRIDE:Q6PBK3
Ensembl:ENSDART00000052063 Ensembl:ENSDART00000133109 GeneID:406307
KEGG:dre:406307 InParanoid:Q6PBK3 NextBio:20817935 Bgee:Q6PBK3
Uniprot:Q6PBK3
Length = 69
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 33/46 (71%), Positives = 38/46 (82%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
K A V KV+GRTGS+GQ TQVRV+FMDD+ R I RNVKGPVR GD+
Sbjct: 10 KLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55
>SGD|S000004254 [details] [associations]
symbol:RPS28B "Protein component of the small (40S) ribosomal
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0006407
"rRNA export from nucleus" evidence=IGI] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;IDA] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=IDA] [GO:0002181 "cytoplasmic
translation" evidence=IC] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000289
Pfam:PF01200 ProDom:PD005541 PROSITE:PS00961 SGD:S000004254
EMBL:BK006945 GO:GO:0003735 GO:GO:0002181 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:U17244 GO:GO:0022627
GO:GO:0006407 KO:K02979 OMA:QVKVEFI PANTHER:PTHR10769
HOGENOM:HOG000224552 GeneTree:ENSGT00390000003580 OrthoDB:EOG4STWFH
PIR:S51401 RefSeq:NP_013366.1 ProteinModelPortal:P0C0X0 SMR:P0C0X0
DIP:DIP-1389N IntAct:P0C0X0 STRING:P0C0X0 EnsemblFungi:YLR264W
GeneID:850969 KEGG:sce:YLR264W CYGD:YLR264w NextBio:967463
Genevestigator:P0C0X0 Uniprot:P0C0X0
Length = 67
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 36/53 (67%), Positives = 41/53 (77%)
Query: 1 MDTGGPKK-ATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
MD+ P A VIKV+GRTGSRG VTQVRV+F++DT R I RNVKGPVR DI
Sbjct: 1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDI 53
>SGD|S000005693 [details] [associations]
symbol:RPS28A "Protein component of the small (40S) ribosomal
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;IDA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IDA] [GO:0002181 "cytoplasmic translation"
evidence=IC] [GO:0006407 "rRNA export from nucleus" evidence=IGI]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000289 Pfam:PF01200 ProDom:PD005541 PROSITE:PS00961
SGD:S000005693 EMBL:BK006948 GO:GO:0003735 GO:GO:0002181
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:U55021
GO:GO:0022627 PDB:3IZB PDB:3O2Z PDB:3O30 PDB:3U5C PDB:3U5G
PDBsum:3IZB PDBsum:3O2Z PDBsum:3O30 PDBsum:3U5C PDBsum:3U5G
GO:GO:0006407 eggNOG:COG2053 KO:K02979 PANTHER:PTHR10769
HOGENOM:HOG000224552 OMA:EFMEDTS EMBL:X00128 EMBL:Z75075
EMBL:AY692746 PIR:A02750 RefSeq:NP_014810.1
ProteinModelPortal:Q3E7X9 SMR:Q3E7X9 DIP:DIP-29384N IntAct:Q3E7X9
MINT:MINT-390375 STRING:Q3E7X9 PaxDb:Q3E7X9 PRIDE:Q3E7X9
EnsemblFungi:YOR167C GeneID:854338 KEGG:sce:YOR167C CYGD:YOR167c
GeneTree:ENSGT00390000003580 OrthoDB:EOG4STWFH NextBio:976408
Genevestigator:Q3E7X9 Uniprot:Q3E7X9
Length = 67
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 36/53 (67%), Positives = 40/53 (75%)
Query: 1 MDTGGPKK-ATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
MD P A VIKV+GRTGSRG VTQVRV+F++DT R I RNVKGPVR DI
Sbjct: 1 MDNKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDI 53
>UNIPROTKB|G4MR44 [details] [associations]
symbol:MGG_09894 "40S ribosomal protein S28" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000289
Pfam:PF01200 ProDom:PD005541 PROSITE:PS00961 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:CM001231 KO:K02979 PANTHER:PTHR10769
RefSeq:XP_003709988.1 ProteinModelPortal:G4MR44
EnsemblFungi:MGG_09894T0 GeneID:2680938 KEGG:mgr:MGG_09894
Uniprot:G4MR44
Length = 68
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 33/46 (71%), Positives = 36/46 (78%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
K V +V+GRTGSRG VTQVRV+FMDD R I RNVKGPVRV DI
Sbjct: 9 KLVKVTRVLGRTGSRGGVTQVRVEFMDDQSRSIIRNVKGPVRVDDI 54
>RGD|2323691 [details] [associations]
symbol:LOC100359503 "ribosomal protein S28-like" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000289
Pfam:PF01200 ProDom:PD005541 PROSITE:PS00961 RGD:2323691
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 PANTHER:PTHR10769
OrthoDB:EOG4HT8V0 OMA:SEREARC IPI:IPI00360276 RefSeq:XP_002728474.1
RefSeq:XP_003752967.1 ProteinModelPortal:D3ZWJ5 PRIDE:D3ZWJ5
Ensembl:ENSRNOT00000025380 GeneID:100359503 KEGG:rno:100359503
UCSC:RGD:2323691 Uniprot:D3ZWJ5
Length = 69
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 36/55 (65%), Positives = 40/55 (72%)
Query: 1 MDTGG--P-KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
MDT P K A V KV+GRTGS+GQ TQVRV+FMDDT R I RN KGPV GD+
Sbjct: 1 MDTSRMQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNFKGPVPEGDV 55
>ASPGD|ASPL0000000338 [details] [associations]
symbol:AN6632 species:162425 "Emericella nidulans"
[GO:0000028 "ribosomal small subunit assembly" evidence=IEA]
[GO:0006407 "rRNA export from nucleus" evidence=IEA] [GO:0000056
"ribosomal small subunit export from nucleus" evidence=IEA]
[GO:0000469 "cleavage involved in rRNA processing" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000289 Pfam:PF01200 ProDom:PD005541 PROSITE:PS00961
GO:GO:0006412 EMBL:BN001301 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AACD01000110 GO:GO:0022627
GO:GO:0006407 eggNOG:COG2053 KO:K02979 OMA:QVKVEFI
PANTHER:PTHR10769 HOGENOM:HOG000224552 OrthoDB:EOG4STWFH
RefSeq:XP_664236.1 ProteinModelPortal:Q5AYJ8 STRING:Q5AYJ8
EnsemblFungi:CADANIAT00007413 GeneID:2870378 KEGG:ani:AN6632.2
Uniprot:Q5AYJ8
Length = 68
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 33/46 (71%), Positives = 36/46 (78%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
K V +V+GRTGSRG VTQVRV+FMDD R I RNVKGPVRV DI
Sbjct: 9 KLVKVTRVLGRTGSRGGVTQVRVEFMDDQTRSIIRNVKGPVRVDDI 54
>UNIPROTKB|Q5AYJ8 [details] [associations]
symbol:AN6632.2 "Ribosomal protein S28e (AFU_orthologue;
AFUA_7G04490)" species:227321 "Aspergillus nidulans FGSC A4"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0006407 "rRNA export from nucleus" evidence=ISS] [GO:0022627
"cytosolic small ribosomal subunit" evidence=ISS]
InterPro:IPR000289 Pfam:PF01200 ProDom:PD005541 PROSITE:PS00961
GO:GO:0006412 EMBL:BN001301 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AACD01000110 GO:GO:0022627
GO:GO:0006407 eggNOG:COG2053 KO:K02979 OMA:QVKVEFI
PANTHER:PTHR10769 HOGENOM:HOG000224552 OrthoDB:EOG4STWFH
RefSeq:XP_664236.1 ProteinModelPortal:Q5AYJ8 STRING:Q5AYJ8
EnsemblFungi:CADANIAT00007413 GeneID:2870378 KEGG:ani:AN6632.2
Uniprot:Q5AYJ8
Length = 68
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 33/46 (71%), Positives = 36/46 (78%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
K V +V+GRTGSRG VTQVRV+FMDD R I RNVKGPVRV DI
Sbjct: 9 KLVKVTRVLGRTGSRGGVTQVRVEFMDDQTRSIIRNVKGPVRVDDI 54
>TAIR|locus:2100118 [details] [associations]
symbol:AT3G10090 "AT3G10090" species:3702 "Arabidopsis
thaliana" [GO:0003735 "structural constituent of ribosome"
evidence=IEA;ISS;IBA] [GO:0005622 "intracellular" evidence=IEA;IBA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006407 "rRNA export from nucleus"
evidence=IBA] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0022626
"cytosolic ribosome" evidence=IDA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR000289 Pfam:PF01200
ProDom:PD005541 PROSITE:PS00961 GO:GO:0005886 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005618 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006412 EMBL:AL162873 EMBL:AB005235
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AC010927 GO:GO:0022627 GO:GO:0006407 EMBL:AY128400
EMBL:BT000086 EMBL:BT010782 EMBL:BT011253 EMBL:BT025696
IPI:IPI00519631 PIR:T48412 RefSeq:NP_187620.1 RefSeq:NP_196005.1
UniGene:At.27764 UniGene:At.39990 HSSP:P61030
ProteinModelPortal:Q9SR73 SMR:Q9SR73 IntAct:Q9SR73 STRING:Q9SR73
PaxDb:Q9SR73 PRIDE:Q9SR73 DNASU:820170 EnsemblPlants:AT3G10090.1
EnsemblPlants:AT5G03850.1 GeneID:820170 GeneID:831692
KEGG:ath:AT3G10090 KEGG:ath:AT5G03850 TAIR:At3g10090 TAIR:At5g03850
eggNOG:COG2053 InParanoid:Q9SR73 KO:K02979 OMA:QVKVEFI
PhylomeDB:Q9SR73 ProtClustDB:CLSN2685181 Genevestigator:Q9SR73
GermOnline:AT3G10090 PANTHER:PTHR10769 Uniprot:Q9SR73
Length = 64
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 34/46 (73%), Positives = 38/46 (82%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
K A V+KV+GRTGSRGQVTQVRV+F D + R I RNVKGPVR GDI
Sbjct: 6 KHAVVVKVMGRTGSRGQVTQVRVKFTD-SDRYIMRNVKGPVREGDI 50
>TAIR|locus:2150610 [details] [associations]
symbol:AT5G03850 "AT5G03850" species:3702 "Arabidopsis
thaliana" [GO:0003735 "structural constituent of ribosome"
evidence=IEA;ISS;IBA] [GO:0005622 "intracellular" evidence=IEA;IBA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006407 "rRNA export from nucleus"
evidence=IBA] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0005794 "Golgi apparatus"
evidence=RCA] InterPro:IPR000289 Pfam:PF01200 ProDom:PD005541
PROSITE:PS00961 GO:GO:0005886 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005618 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006412 EMBL:AL162873 EMBL:AB005235
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AC010927 GO:GO:0022627 GO:GO:0006407 EMBL:AY128400
EMBL:BT000086 EMBL:BT010782 EMBL:BT011253 EMBL:BT025696
IPI:IPI00519631 PIR:T48412 RefSeq:NP_187620.1 RefSeq:NP_196005.1
UniGene:At.27764 UniGene:At.39990 HSSP:P61030
ProteinModelPortal:Q9SR73 SMR:Q9SR73 IntAct:Q9SR73 STRING:Q9SR73
PaxDb:Q9SR73 PRIDE:Q9SR73 DNASU:820170 EnsemblPlants:AT3G10090.1
EnsemblPlants:AT5G03850.1 GeneID:820170 GeneID:831692
KEGG:ath:AT3G10090 KEGG:ath:AT5G03850 TAIR:At3g10090 TAIR:At5g03850
eggNOG:COG2053 InParanoid:Q9SR73 KO:K02979 OMA:QVKVEFI
PhylomeDB:Q9SR73 ProtClustDB:CLSN2685181 Genevestigator:Q9SR73
GermOnline:AT3G10090 PANTHER:PTHR10769 Uniprot:Q9SR73
Length = 64
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 34/46 (73%), Positives = 38/46 (82%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
K A V+KV+GRTGSRGQVTQVRV+F D + R I RNVKGPVR GDI
Sbjct: 6 KHAVVVKVMGRTGSRGQVTQVRVKFTD-SDRYIMRNVKGPVREGDI 50
>TAIR|locus:2164386 [details] [associations]
symbol:RPS28 "AT5G64140" species:3702 "Arabidopsis
thaliana" [GO:0003735 "structural constituent of ribosome"
evidence=IEA;ISS;IBA] [GO:0005622 "intracellular" evidence=IEA;IBA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006407 "rRNA export from nucleus"
evidence=IBA] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0022626
"cytosolic ribosome" evidence=IDA] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=IDA] InterPro:IPR000289 Pfam:PF01200
ProDom:PD005541 PROSITE:PS00961 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006412 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0022627
GO:GO:0006407 EMBL:AB008266 eggNOG:COG2053 KO:K02979
ProtClustDB:CLSN2685181 PANTHER:PTHR10769 EMBL:L09755 EMBL:AY059859
EMBL:AY081679 EMBL:AY087546 IPI:IPI00522792 RefSeq:NP_201219.1
UniGene:At.22284 ProteinModelPortal:P34789 SMR:P34789 STRING:P34789
PaxDb:P34789 PRIDE:P34789 EnsemblPlants:AT5G64140.1 GeneID:836535
KEGG:ath:AT5G64140 TAIR:At5g64140 HOGENOM:HOG000224552
InParanoid:P34789 OMA:EFMEDTS PhylomeDB:P34789
Genevestigator:P34789 GermOnline:AT5G64140 Uniprot:P34789
Length = 64
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 33/46 (71%), Positives = 38/46 (82%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
K A V+KV+GRTGSRGQVTQVRV+F D + R I RNVKGPVR GD+
Sbjct: 6 KHAVVVKVMGRTGSRGQVTQVRVKFTD-SDRFIMRNVKGPVREGDV 50
>UNIPROTKB|Q7S6W5 [details] [associations]
symbol:rps-28 "40S ribosomal protein S28" species:367110
"Neurospora crassa OR74A" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006407 "rRNA export from nucleus"
evidence=ISS] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS] InterPro:IPR000289 Pfam:PF01200 ProDom:PD005541
PROSITE:PS00961 GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0022627 GO:GO:0006407
eggNOG:COG2053 KO:K02979 OMA:QVKVEFI PANTHER:PTHR10769
HOGENOM:HOG000224552 OrthoDB:EOG4STWFH EMBL:AABX02000022
RefSeq:XP_960561.1 UniGene:Ncr.9620 ProteinModelPortal:Q7S6W5
STRING:Q7S6W5 PRIDE:Q7S6W5 EnsemblFungi:EFNCRT00000005661
GeneID:3876676 KEGG:ncr:NCU05599 Uniprot:Q7S6W5
Length = 68
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 35/54 (64%), Positives = 39/54 (72%)
Query: 1 MDTG-GPKKAT-VIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
MD+ P K V +V+GRTGSRG VTQVRV+FMDD R I RNVKGPVR DI
Sbjct: 1 MDSSKAPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQTRSIIRNVKGPVREDDI 54
>FB|FBgn0030136 [details] [associations]
symbol:RpS28b "Ribosomal protein S28b" species:7227
"Drosophila melanogaster" [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS;IBA] [GO:0003735 "structural constituent of
ribosome" evidence=ISS;IBA] [GO:0006412 "translation" evidence=IEA]
[GO:0005811 "lipid particle" evidence=IDA] [GO:0006407 "rRNA export
from nucleus" evidence=IBA] InterPro:IPR000289 Pfam:PF01200
ProDom:PD005541 PROSITE:PS00961 GO:GO:0005811 GO:GO:0006412
EMBL:AE014298 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0022627 GO:GO:0006407 eggNOG:COG2053
KO:K02979 PANTHER:PTHR10769 OMA:EFMEDTS
GeneTree:ENSGT00390000003580 EMBL:AY061320 RefSeq:NP_572568.1
UniGene:Dm.3643 ProteinModelPortal:Q9W334 SMR:Q9W334
MINT:MINT-837008 STRING:Q9W334 PaxDb:Q9W334 PRIDE:Q9W334
EnsemblMetazoa:FBtr0071360 GeneID:31897 KEGG:dme:Dmel_CG2998
CTD:31897 FlyBase:FBgn0030136 InParanoid:Q9W334 OrthoDB:EOG4RXWH2
PhylomeDB:Q9W334 ChiTaRS:RpS28b GenomeRNAi:31897 NextBio:775828
Bgee:Q9W334 GermOnline:CG2998 Uniprot:Q9W334
Length = 65
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 30/44 (68%), Positives = 37/44 (84%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
A V+KV+GRTGS+GQ TQV+V+F+ + RQI RNVKGPVR GDI
Sbjct: 8 ARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDI 51
>WB|WBGene00004497 [details] [associations]
symbol:rps-28 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0018996 "molting cycle, collagen
and cuticulin-based cuticle" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] InterPro:IPR000289 Pfam:PF01200
ProDom:PD005541 PROSITE:PS00961 GO:GO:0040010 GO:GO:0006915
GO:GO:0006412 GO:GO:0018996 GO:GO:0000003 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:FO080782
GO:GO:0022627 GO:GO:0006407 eggNOG:COG2053 KO:K02979 OMA:QVKVEFI
PANTHER:PTHR10769 HOGENOM:HOG000224552 GeneTree:ENSGT00390000003580
RefSeq:NP_500115.1 ProteinModelPortal:Q95Y04 SMR:Q95Y04
STRING:Q95Y04 PaxDb:Q95Y04 PRIDE:Q95Y04 EnsemblMetazoa:Y41D4B.5.1
EnsemblMetazoa:Y41D4B.5.2 GeneID:176975 KEGG:cel:CELE_Y41D4B.5
UCSC:Y41D4B.5.1 CTD:176975 WormBase:Y41D4B.5 InParanoid:Q95Y04
NextBio:894814 Uniprot:Q95Y04
Length = 65
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/45 (71%), Positives = 36/45 (80%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMDD-TKRQITRNVKGPVRVGDI 52
A V KVIGRTGS+GQ TQVRV+F++D R I RNVKGPVR GDI
Sbjct: 7 ARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDI 51
>UNIPROTKB|Q95Y04 [details] [associations]
symbol:rps-28 "40S ribosomal protein S28" species:6239
"Caenorhabditis elegans" [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IBA] [GO:0006407 "rRNA export from nucleus"
evidence=IBA] [GO:0003735 "structural constituent of ribosome"
evidence=IBA] InterPro:IPR000289 Pfam:PF01200 ProDom:PD005541
PROSITE:PS00961 GO:GO:0040010 GO:GO:0006915 GO:GO:0006412
GO:GO:0018996 GO:GO:0000003 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:FO080782 GO:GO:0022627
GO:GO:0006407 eggNOG:COG2053 KO:K02979 OMA:QVKVEFI
PANTHER:PTHR10769 HOGENOM:HOG000224552 GeneTree:ENSGT00390000003580
RefSeq:NP_500115.1 ProteinModelPortal:Q95Y04 SMR:Q95Y04
STRING:Q95Y04 PaxDb:Q95Y04 PRIDE:Q95Y04 EnsemblMetazoa:Y41D4B.5.1
EnsemblMetazoa:Y41D4B.5.2 GeneID:176975 KEGG:cel:CELE_Y41D4B.5
UCSC:Y41D4B.5.1 CTD:176975 WormBase:Y41D4B.5 InParanoid:Q95Y04
NextBio:894814 Uniprot:Q95Y04
Length = 65
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/45 (71%), Positives = 36/45 (80%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMDD-TKRQITRNVKGPVRVGDI 52
A V KVIGRTGS+GQ TQVRV+F++D R I RNVKGPVR GDI
Sbjct: 7 ARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDI 51
>RGD|2321668 [details] [associations]
symbol:LOC100360689 "ribosomal protein S28-like" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000289
Pfam:PF01200 ProDom:PD005541 RGD:2321668 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 PANTHER:PTHR10769 GeneTree:ENSGT00390000003580
IPI:IPI00766325 Ensembl:ENSRNOT00000051208 Uniprot:F1M168
Length = 69
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 29/46 (63%), Positives = 34/46 (73%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
K A V KV+ RTGS+GQ QV+V+ MDDT R RNVKGPVR GD+
Sbjct: 10 KLARVAKVLSRTGSQGQCMQVQVECMDDTSRSTIRNVKGPVRDGDV 55
>GENEDB_PFALCIPARUM|PF14_0585 [details] [associations]
symbol:PF14_0585 "ribosomal protein S28e,
putative" species:5833 "Plasmodium falciparum" [GO:0022627
"cytosolic small ribosomal subunit" evidence=ISS]
InterPro:IPR000289 Pfam:PF01200 ProDom:PD005541 PROSITE:PS00961
GO:GO:0006412 GO:GO:0003735 EMBL:AE014187 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0022627 KO:K02979
OMA:QVKVEFI PANTHER:PTHR10769 HOGENOM:HOG000224552
ProtClustDB:PTZ00085 HSSP:O26356 RefSeq:XP_001348759.1
ProteinModelPortal:Q8IKL9 PRIDE:Q8IKL9
EnsemblProtists:PF14_0585:mRNA GeneID:812167 KEGG:pfa:PF14_0585
EuPathDB:PlasmoDB:PF3D7_1461300 Uniprot:Q8IKL9
Length = 67
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/49 (65%), Positives = 36/49 (73%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTK---RQITRNVKGPVRVGDI 52
K A V KV+GRTGSRG V QVR QFM D++ R + RNVKGPVR GDI
Sbjct: 5 KLAKVEKVLGRTGSRGGVIQVRAQFMGDSELAGRFLIRNVKGPVREGDI 53
>UNIPROTKB|Q7RH51 [details] [associations]
symbol:PY04142 "Ribosomal protein S28e" species:73239
"Plasmodium yoelii yoelii" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006407 "rRNA export from nucleus"
evidence=ISS] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS] InterPro:IPR000289 Pfam:PF01200 ProDom:PD005541
PROSITE:PS00961 GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0022627 GO:GO:0006407
eggNOG:COG2053 KO:K02979 PANTHER:PTHR10769 EMBL:AABL01001237
RefSeq:XP_724396.1 HSSP:O26356 ProteinModelPortal:Q7RH51
STRING:Q7RH51 GeneID:3789721 KEGG:pyo:PY04142
EuPathDB:PlasmoDB:PY04142 Uniprot:Q7RH51
Length = 67
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/49 (65%), Positives = 36/49 (73%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTK---RQITRNVKGPVRVGDI 52
K A V KV+GRTGSRG V QVR QFM D++ R + RNVKGPVR GDI
Sbjct: 5 KLAKVEKVLGRTGSRGGVIQVRAQFMGDSELSGRFLIRNVKGPVREGDI 53
>UNIPROTKB|Q8IKL9 [details] [associations]
symbol:PF14_0585 "40S ribosomal protein S28e, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISS] InterPro:IPR000289
Pfam:PF01200 ProDom:PD005541 PROSITE:PS00961 GO:GO:0006412
GO:GO:0003735 EMBL:AE014187 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0022627 KO:K02979 OMA:QVKVEFI
PANTHER:PTHR10769 HOGENOM:HOG000224552 ProtClustDB:PTZ00085
HSSP:O26356 RefSeq:XP_001348759.1 ProteinModelPortal:Q8IKL9
PRIDE:Q8IKL9 EnsemblProtists:PF14_0585:mRNA GeneID:812167
KEGG:pfa:PF14_0585 EuPathDB:PlasmoDB:PF3D7_1461300 Uniprot:Q8IKL9
Length = 67
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/49 (65%), Positives = 36/49 (73%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTK---RQITRNVKGPVRVGDI 52
K A V KV+GRTGSRG V QVR QFM D++ R + RNVKGPVR GDI
Sbjct: 5 KLAKVEKVLGRTGSRGGVIQVRAQFMGDSELAGRFLIRNVKGPVREGDI 53
>FB|FBgn0085211 [details] [associations]
symbol:RpS28-like "Ribosomal protein S28-like" species:7227
"Drosophila melanogaster" [GO:0005840 "ribosome" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000289
Pfam:PF01200 ProDom:PD005541 EMBL:AE014134 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 RefSeq:NP_001097132.1 ProteinModelPortal:A8DYY3
SMR:A8DYY3 EnsemblMetazoa:FBtr0112375 GeneID:5740688
KEGG:dme:Dmel_CG34182 UCSC:CG34182-RA CTD:5740688
FlyBase:FBgn0085211 InParanoid:A8DYY3 OMA:INIEEFE OrthoDB:EOG4N2Z5P
PhylomeDB:A8DYY3 NextBio:20891726 Uniprot:A8DYY3
Length = 76
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 8 KATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
KA VIK++ R G+RG +T+VRVQ +D K Q R VKGPVR+GDI
Sbjct: 8 KARVIKILNRIGARGILTEVRVQLVDQPKMQFMRTVKGPVRLGDI 52
>RGD|1591339 [details] [associations]
symbol:LOC685674 "similar to 40S ribosomal protein S28"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0006407 "rRNA export
from nucleus" evidence=IBA] [GO:0006412 "translation" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA]
InterPro:IPR000289 Pfam:PF01200 ProDom:PD005541 RGD:1591339
GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0022627 GO:GO:0006407 PANTHER:PTHR10769
IPI:IPI00359976 RefSeq:XP_001064782.1 RefSeq:XP_002727242.1
ProteinModelPortal:D3ZRZ1 Ensembl:ENSRNOT00000040690 GeneID:685674
KEGG:rno:685674 UCSC:RGD:1591339 OrthoDB:EOG4NCMFJ NextBio:730217
Uniprot:D3ZRZ1
Length = 69
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 30/55 (54%), Positives = 37/55 (67%)
Query: 1 MDTGG--P-KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDI 52
MDT P K A V KV+GRT S+ Q T +RV+FMDD+ I +NVKGPV GD+
Sbjct: 1 MDTSRVQPIKLARVNKVLGRTVSQDQCTHMRVEFMDDSNHSIIQNVKGPVGEGDV 55
>UNIPROTKB|Q234G5 [details] [associations]
symbol:TTHERM_00105330 "Ribosomal protein S28e containing
protein" species:312017 "Tetrahymena thermophila SB210" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006407
"rRNA export from nucleus" evidence=ISS] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISS] InterPro:IPR000289
Pfam:PF01200 ProDom:PD005541 GO:GO:0006412 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0022627
GO:GO:0006407 KO:K02979 PANTHER:PTHR10769 ProtClustDB:PTZ00085
PDB:2XZM PDB:2XZN PDBsum:2XZM PDBsum:2XZN EMBL:GG662767
RefSeq:XP_001012283.1 UniGene:Tth.28170 ProteinModelPortal:Q234G5
EnsemblProtists:EAR92038 GeneID:7828148 KEGG:tet:TTHERM_00105330
Uniprot:Q234G5
Length = 68
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 1 MDTGGPKKATVIKVIGRTGSRGQVTQVRVQFMDDTK--RQITRNVKGPVRVGDI 52
M+T KA ++ V+G+TGSRG +TQVRV + + RQ+ RNVKG RVGD+
Sbjct: 1 MNTEETTKARIMDVLGKTGSRGGITQVRVVLISGKEEGRQLIRNVKGACRVGDV 54
>DICTYBASE|DDB_G0285597 [details] [associations]
symbol:rps28 "40S ribosomal protein S28"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA;IBA] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=IBA] [GO:0006407 "rRNA export from
nucleus" evidence=IBA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000289 Pfam:PF01200 ProDom:PD005541 PROSITE:PS00961
dictyBase:DDB_G0285597 GenomeReviews:CM000153_GR GO:GO:0006412
EMBL:AAFI02000079 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0022627 GO:GO:0006407
HSSP:P61030 eggNOG:COG2053 KO:K02979 OMA:QVKVEFI PANTHER:PTHR10769
RefSeq:XP_638148.1 ProteinModelPortal:Q54MZ5 STRING:Q54MZ5
PRIDE:Q54MZ5 EnsemblProtists:DDB0231067 GeneID:8625196
KEGG:ddi:DDB_G0285597 ProtClustDB:PTZ00085 Uniprot:Q54MZ5
Length = 72
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 27/47 (57%), Positives = 33/47 (70%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMDDTK---RQITRNVKGPVRVGDI 52
A V +V+ RTGSRG VTQVRV+F+ + R + RNVKGPVR DI
Sbjct: 12 AKVTEVLCRTGSRGAVTQVRVEFLGTAQGKERTLLRNVKGPVRKDDI 58
>UNIPROTKB|Q8TQL8 [details] [associations]
symbol:rps28e "30S ribosomal protein S28e" species:188937
"Methanosarcina acetivorans C2A" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006407 "rRNA export
from nucleus" evidence=ISS] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS] InterPro:IPR000289 Pfam:PF01200
ProDom:PD005541 PROSITE:PS00961 HAMAP:MF_00292 GO:GO:0006412
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AE010299 GenomeReviews:AE010299_GR GO:GO:0022627 GO:GO:0006407
eggNOG:COG2053 KO:K02979 PANTHER:PTHR10769 RefSeq:NP_616456.1
ProteinModelPortal:Q8TQL8 SMR:Q8TQL8 GeneID:1473410 KEGG:mac:MA1522
OMA:KCRILDG ProtClustDB:PRK04007
BioCyc:MACE188937:GI2O-1584-MONOMER InterPro:IPR022836
Uniprot:Q8TQL8
Length = 76
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 3 TGGPKKATVIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDI 52
T G A VI VIG TG G+ +Q++ + ++ D R ITRN GPVR+GDI
Sbjct: 9 TIGGFAAEVIDVIGNTGMHGEASQIQCRVLEGRDKGRVITRNCVGPVRIGDI 60
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 66 52 0.00091 102 3 11 22 0.41 27
29 0.47 26
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 35
No. of states in DFA: 285 (31 KB)
Total size of DFA: 47 KB (2057 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 6.01u 0.13s 6.14t Elapsed: 00:00:01
Total cpu time: 6.01u 0.13s 6.14t Elapsed: 00:00:01
Start: Tue May 21 00:53:33 2013 End: Tue May 21 00:53:34 2013