BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037546
(66 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P62859|RS28_RAT 40S ribosomal protein S28 OS=Rattus norvegicus GN=Rps28 PE=1 SV=1
Length = 69
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/60 (80%), Positives = 52/60 (86%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESEREARRLR 66
K A V KV+GRTGS+GQ TQVRV+FMDDT R I RNVKGPVR GD+LTLLESEREARRLR
Sbjct: 10 KLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR 69
>sp|Q6QAT1|RS28_PIG 40S ribosomal protein S28 OS=Sus scrofa GN=RPS28 PE=3 SV=2
Length = 69
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/60 (80%), Positives = 52/60 (86%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESEREARRLR 66
K A V KV+GRTGS+GQ TQVRV+FMDDT R I RNVKGPVR GD+LTLLESEREARRLR
Sbjct: 10 KLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR 69
>sp|P62858|RS28_MOUSE 40S ribosomal protein S28 OS=Mus musculus GN=Rps28 PE=2 SV=1
Length = 69
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/60 (80%), Positives = 52/60 (86%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESEREARRLR 66
K A V KV+GRTGS+GQ TQVRV+FMDDT R I RNVKGPVR GD+LTLLESEREARRLR
Sbjct: 10 KLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR 69
>sp|P62857|RS28_HUMAN 40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1
Length = 69
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/60 (80%), Positives = 52/60 (86%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESEREARRLR 66
K A V KV+GRTGS+GQ TQVRV+FMDDT R I RNVKGPVR GD+LTLLESEREARRLR
Sbjct: 10 KLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR 69
>sp|Q56JX6|RS28_BOVIN 40S ribosomal protein S28 OS=Bos taurus GN=RPS28 PE=3 SV=1
Length = 69
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/60 (80%), Positives = 52/60 (86%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESEREARRLR 66
K A V KV+GRTGS+GQ TQVRV+FMDDT R I RNVKGPVR GD+LTLLESEREARRLR
Sbjct: 10 KLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR 69
>sp|Q90YP3|RS28_ICTPU 40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3
SV=1
Length = 69
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/60 (78%), Positives = 52/60 (86%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESEREARRLR 66
K A V KV+GRTGS+GQ TQVRV+FMDD+ R I RNVKGPVR GD+LTLLESEREARRLR
Sbjct: 10 KLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRLR 69
>sp|Q6PBK3|RS28_DANRE 40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1
Length = 69
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/60 (78%), Positives = 52/60 (86%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESEREARRLR 66
K A V KV+GRTGS+GQ TQVRV+FMDD+ R I RNVKGPVR GD+LTLLESEREARRLR
Sbjct: 10 KLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRLR 69
>sp|P46302|RS28_MAIZE 40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1
Length = 65
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/66 (77%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 1 MDTGGPKKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESER 60
MDT K A V+KV+GRTGSRGQVTQVRV+F+DD R I RNVKGPV GDILTLLESER
Sbjct: 1 MDTQ-VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESER 59
Query: 61 EARRLR 66
EARRLR
Sbjct: 60 EARRLR 65
>sp|Q10421|RS28_SCHPO 40S ribosomal protein S28 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps28a PE=3 SV=1
Length = 68
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/60 (81%), Positives = 51/60 (85%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESEREARRLR 66
K A VIKV+GRTGSRG VTQVRV+FMDDT R I RNVKGPVR DIL LLESEREARRLR
Sbjct: 9 KLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDILVLLESEREARRLR 68
>sp|P33285|RS28_KLULA 40S ribosomal protein S28 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=RPS28 PE=3 SV=1
Length = 67
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 55/67 (82%), Gaps = 1/67 (1%)
Query: 1 MDTGGP-KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESE 59
MDT P A VIKV+GRTGSRG VTQVRV+F++DT R I RNVKGPVR GDIL L+ESE
Sbjct: 1 MDTKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLMESE 60
Query: 60 REARRLR 66
REARRLR
Sbjct: 61 REARRLR 67
>sp|Q74ZD8|RS28_ASHGO 40S ribosomal protein S28 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPS28A PE=3
SV=1
Length = 67
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/67 (73%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
Query: 1 MDTGGP-KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESE 59
MD+ P A VIKV+GRTGSRG VTQVRV+F+DDT R I RNVKGPVR DIL L+ESE
Sbjct: 1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLDDTSRTIVRNVKGPVRENDILVLMESE 60
Query: 60 REARRLR 66
REARRLR
Sbjct: 61 REARRLR 67
>sp|P33286|RS28_KLUMA 40S ribosomal protein S28 OS=Kluyveromyces marxianus GN=RPS28
PE=3 SV=1
Length = 67
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/67 (73%), Positives = 55/67 (82%), Gaps = 1/67 (1%)
Query: 1 MDTGGP-KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESE 59
MD+ P A VIKV+GRTGSRG VTQVRV+F++DT R I RNVKGPVR GDIL L+ESE
Sbjct: 1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLMESE 60
Query: 60 REARRLR 66
REARRLR
Sbjct: 61 REARRLR 67
>sp|P0C0X0|RS28B_YEAST 40S ribosomal protein S28-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS28B PE=1 SV=1
Length = 67
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
Query: 1 MDTGGP-KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESE 59
MD+ P A VIKV+GRTGSRG VTQVRV+F++DT R I RNVKGPVR DIL L+ESE
Sbjct: 1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLMESE 60
Query: 60 REARRLR 66
REARRLR
Sbjct: 61 REARRLR 67
>sp|Q9SR73|RS281_ARATH 40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A
PE=3 SV=1
Length = 64
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/60 (80%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESEREARRLR 66
K A V+KV+GRTGSRGQVTQVRV+F D + R I RNVKGPVR GDILTLLESEREARRLR
Sbjct: 6 KHAVVVKVMGRTGSRGQVTQVRVKFTD-SDRYIMRNVKGPVREGDILTLLESEREARRLR 64
>sp|Q962Q2|RS28_SPOFR 40S ribosomal protein S28 OS=Spodoptera frugiperda GN=RpS28 PE=3
SV=1
Length = 65
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 52/58 (89%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESEREARRLR 66
A V+KV+GRTGS+GQ TQV+V+F+ +T RQI RNVKGPVR GDILTLLESEREARRLR
Sbjct: 8 ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILTLLESEREARRLR 65
>sp|Q6EV21|RS28_PAPDA 40S ribosomal protein S28 OS=Papilio dardanus GN=RpS28 PE=3 SV=1
Length = 65
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 52/58 (89%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESEREARRLR 66
A V+KV+GRTGS+GQ TQV+V+F+ +T RQI RNVKGPVR GDILTLLESEREARRLR
Sbjct: 8 ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILTLLESEREARRLR 65
>sp|Q6PS50|RS28_BOMMO 40S ribosomal protein S28 OS=Bombyx mori GN=RpS28 PE=3 SV=1
Length = 65
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 52/58 (89%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESEREARRLR 66
A V+KV+GRTGS+GQ TQV+V+F+ +T RQI RNVKGPVR GDILTLLESEREARRLR
Sbjct: 8 ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILTLLESEREARRLR 65
>sp|Q3E7X9|RS28A_YEAST 40S ribosomal protein S28-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS28A PE=1 SV=1
Length = 67
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 1 MDTGGP-KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESE 59
MD P A VIKV+GRTGSRG VTQVRV+F++DT R I RNVKGPVR DIL L+ESE
Sbjct: 1 MDNKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLMESE 60
Query: 60 REARRLR 66
REARRLR
Sbjct: 61 REARRLR 67
>sp|Q6FLC3|RS28_CANGA 40S ribosomal protein S28 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPS28A
PE=3 SV=1
Length = 67
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 1 MDTGGP-KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESE 59
MD P A VIKV+GRTGSRG VTQVRV+F++DT R I RNVKGPVR DIL L+ESE
Sbjct: 1 MDNKTPVTLARVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLMESE 60
Query: 60 REARRLR 66
REARRLR
Sbjct: 61 REARRLR 67
>sp|Q9W334|RS28_DROME 40S ribosomal protein S28 OS=Drosophila melanogaster GN=RpS28b
PE=3 SV=2
Length = 65
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/58 (75%), Positives = 51/58 (87%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESEREARRLR 66
A V+KV+GRTGS+GQ TQV+V+F+ + RQI RNVKGPVR GDILTLLESEREARRLR
Sbjct: 8 ARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDILTLLESEREARRLR 65
>sp|O61590|RS28_OSTOS 40S ribosomal protein S28 OS=Ostertagia ostertagi GN=rps-28 PE=3
SV=1
Length = 66
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/61 (77%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDT-KRQITRNVKGPVRVGDILTLLESEREARRL 65
K A V K IGRTGS+GQ TQVRV+FMDD R I RNVKGPVR GDILTLLE+EREARRL
Sbjct: 6 KPAXVTKNIGRTGSQGQCTQVRVEFMDDNGNRTINRNVKGPVREGDILTLLEAEREARRL 65
Query: 66 R 66
R
Sbjct: 66 R 66
>sp|P34789|RS282_ARATH 40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C
PE=3 SV=1
Length = 64
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/60 (78%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESEREARRLR 66
K A V+KV+GRTGSRGQVTQVRV+F D + R I RNVKGPVR GD+LTLLESEREARRLR
Sbjct: 6 KHAVVVKVMGRTGSRGQVTQVRVKFTD-SDRFIMRNVKGPVREGDVLTLLESEREARRLR 64
>sp|Q95Y04|RS28_CAEEL 40S ribosomal protein S28 OS=Caenorhabditis elegans GN=rps-28
PE=3 SV=1
Length = 65
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 50/59 (84%), Gaps = 1/59 (1%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMDD-TKRQITRNVKGPVRVGDILTLLESEREARRLR 66
A V KVIGRTGS+GQ TQVRV+F++D R I RNVKGPVR GDILTLLESEREARRLR
Sbjct: 7 ARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILTLLESEREARRLR 65
>sp|Q7S6W5|RS28_NEUCR 40S ribosomal protein S28 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rps-28 PE=3 SV=1
Length = 68
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/60 (75%), Positives = 48/60 (80%)
Query: 7 KKATVIKVIGRTGSRGQVTQVRVQFMDDTKRQITRNVKGPVRVGDILTLLESEREARRLR 66
K V +V+GRTGSRG VTQVRV+FMDD R I RNVKGPVR DIL LLESEREARRLR
Sbjct: 9 KLVKVTRVLGRTGSRGGVTQVRVEFMDDQTRSIIRNVKGPVREDDILVLLESEREARRLR 68
>sp|Q54MZ5|RS28_DICDI 40S ribosomal protein S28 OS=Dictyostelium discoideum GN=rps28
PE=3 SV=1
Length = 72
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 46/61 (75%), Gaps = 3/61 (4%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMDDTK---RQITRNVKGPVRVGDILTLLESEREARRL 65
A V +V+ RTGSRG VTQVRV+F+ + R + RNVKGPVR DIL LLE+EREARRL
Sbjct: 12 AKVTEVLCRTGSRGAVTQVRVEFLGTAQGKERTLLRNVKGPVRKDDILCLLETEREARRL 71
Query: 66 R 66
R
Sbjct: 72 R 72
>sp|Q9Y9A6|RS28_AERPE 30S ribosomal protein S28e OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rps28e PE=3 SV=3
Length = 82
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESEREARRL 65
A VI++IGRTG G+VTQVRV+ ++ D R +TRNV GPVR+GDIL L E+EREAR+L
Sbjct: 20 AEVIQIIGRTGVTGEVTQVRVRILEGRDKGRILTRNVIGPVRIGDILILRETEREARKL 78
>sp|P61030|RS28_PYRHO 30S ribosomal protein S28e OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps28e PE=1 SV=1
Length = 71
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 4/67 (5%)
Query: 2 DTGGPKKATVIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESE 59
D G P A VI++IGRTG+ G VTQV+V+ ++ D R I RNV+GPVRVGDIL L E+E
Sbjct: 4 DEGYP--AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETE 61
Query: 60 REARRLR 66
REAR ++
Sbjct: 62 REAREIK 68
>sp|P61029|RS28_PYRAB 30S ribosomal protein S28e OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rps28e PE=3 SV=1
Length = 71
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 4/67 (5%)
Query: 2 DTGGPKKATVIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESE 59
D G P A VI++IGRTG+ G VTQV+V+ ++ D R I RNV+GPVRVGDIL L E+E
Sbjct: 4 DEGYP--AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETE 61
Query: 60 REARRLR 66
REAR ++
Sbjct: 62 REAREIK 68
>sp|A1RS33|RS28_PYRIL 30S ribosomal protein S28e OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rps28e PE=3 SV=1
Length = 77
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 48/59 (81%), Gaps = 2/59 (3%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESEREARRL 65
A VI+++GRTG G+VTQV+V+ ++ D R +TRN+KGPVR+GDI+ L E+EREARR+
Sbjct: 16 ALVIQILGRTGVAGEVTQVKVKILEGRDKGRILTRNIKGPVRLGDIVMLRETEREARRI 74
>sp|Q8U159|RS28_PYRFU 30S ribosomal protein S28e OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rps28e PE=1 SV=1
Length = 71
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 4/67 (5%)
Query: 2 DTGGPKKATVIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESE 59
D G P A VI++IGRTG+ G VTQV+V+ ++ D R I RNV+GPVR+GDIL L E+E
Sbjct: 4 DEGYP--AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRIGDILILRETE 61
Query: 60 REARRLR 66
REAR ++
Sbjct: 62 REAREIK 68
>sp|A1RXH2|RS28_THEPD 30S ribosomal protein S28e OS=Thermofilum pendens (strain Hrk 5)
GN=rps28e PE=3 SV=1
Length = 77
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 48/59 (81%), Gaps = 2/59 (3%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESEREARRL 65
A V+++IGRTG G+VTQVRV+ ++ D R +TRNV+GPVRVGDI+ L E+EREAR++
Sbjct: 16 AEVVQIIGRTGITGEVTQVRVRVLEGRDKGRILTRNVRGPVRVGDIVMLRETEREARKI 74
>sp|Q4JAV1|RS28_SULAC 30S ribosomal protein S28e OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=rps28e PE=3 SV=1
Length = 84
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESEREARRL 65
A VI+++ RTG G+VTQVRV+ ++ D R +TRNVKGPVR+GDIL L E+EREAR+L
Sbjct: 22 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRLGDILILRETEREARKL 80
>sp|Q975Z8|RS28_SULTO 30S ribosomal protein S28e OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=rps28e PE=3
SV=1
Length = 83
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESEREARRL 65
A VI+++ RTG G+VTQVRV+ ++ D R +TRNVKGPVR+GDIL L E+EREAR+L
Sbjct: 21 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRLGDILILRETEREARKL 79
>sp|Q980Q5|RS28_SULSO 30S ribosomal protein S28e OS=Sulfolobus solfataricus (strain
ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rps28e PE=3
SV=2
Length = 83
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESEREARRL 65
A VI+++ RTG G+VTQVRV+ ++ D R +TRNVKGPVRVGDIL L E+EREAR++
Sbjct: 21 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGDILILRETEREARKI 79
>sp|A4WLP1|RS28_PYRAR 30S ribosomal protein S28e OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=rps28e PE=3 SV=1
Length = 77
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 47/57 (82%), Gaps = 2/57 (3%)
Query: 11 VIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESEREARRL 65
VI+++GRTG G+VTQV+V+ ++ D R +TRN+KGPVR+GDI+ L E+EREARR+
Sbjct: 18 VIQILGRTGIAGEVTQVKVKILEGRDKGRVLTRNIKGPVRLGDIVMLRETEREARRI 74
>sp|B1L5N5|RS28_KORCO 30S ribosomal protein S28e OS=Korarchaeum cryptofilum (strain
OPF8) GN=rps28e PE=3 SV=1
Length = 71
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 4/67 (5%)
Query: 2 DTGGPKKATVIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESE 59
D G P A V+++IGRTG G+V QVR + + D R +TRNVKGPVRVGDIL L E+E
Sbjct: 5 DKGFP--AEVVEIIGRTGVAGEVIQVRAKILAGRDKGRVLTRNVKGPVRVGDILILRETE 62
Query: 60 REARRLR 66
EAR+L+
Sbjct: 63 IEARKLK 69
>sp|Q8ZTA7|RS28_PYRAE 30S ribosomal protein S28e OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rps28e PE=3 SV=1
Length = 77
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 47/57 (82%), Gaps = 2/57 (3%)
Query: 11 VIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESEREARRL 65
V++++GRTG G+VTQV+++ ++ D R +TRNVKGPVR+GDI+ L E+EREARR+
Sbjct: 18 VVQILGRTGIAGEVTQVKIKILEGRDKGRVLTRNVKGPVRLGDIVMLRETEREARRI 74
>sp|B1Y9V2|RS28_PYRNV 30S ribosomal protein S28e OS=Pyrobaculum neutrophilum (strain
DSM 2338 / JCM 9278 / V24Sta) GN=rps28e PE=3 SV=1
Length = 77
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 47/57 (82%), Gaps = 2/57 (3%)
Query: 11 VIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESEREARRL 65
V++++GRTG G+VTQV+++ ++ D R +TRNVKGPVR+GDI+ L E+EREARR+
Sbjct: 18 VVQILGRTGVAGEVTQVKIKVLEGRDKGRVLTRNVKGPVRLGDIVMLRETEREARRI 74
>sp|Q8TVE7|RS28_METKA 30S ribosomal protein S28e OS=Methanopyrus kandleri (strain AV19
/ DSM 6324 / JCM 9639 / NBRC 100938) GN=rps28e PE=3
SV=1
Length = 74
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 46/59 (77%), Gaps = 2/59 (3%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESEREARRL 65
A V++++GRTG G+VTQV+V+ ++ D R ITRNVKGPVR GDIL L E+EREAR +
Sbjct: 15 AEVVEILGRTGMAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDILLLRETEREARPI 73
>sp|P61031|RS28_NANEQ 30S ribosomal protein S28e OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rps28e PE=3 SV=1
Length = 88
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%), Gaps = 2/59 (3%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESEREARRL 65
A V++++GRTG+ G+VTQV V+ ++ D R I RNVKGPVRVGDIL L E+E EAR L
Sbjct: 26 ARVVEIVGRTGTTGEVTQVIVEILEGKDAGRLIRRNVKGPVRVGDILMLRETEIEARPL 84
>sp|A4YCQ2|RS28_METS5 30S ribosomal protein S28e OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=rps28e PE=3 SV=1
Length = 80
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESEREARRL 65
A VI+++ RTG G+VTQVRV+ ++ D R +TRN+KGPVR+GDI+ L E+EREAR+L
Sbjct: 18 AEVIQLLDRTGVTGEVTQVRVRVLEGRDKGRILTRNIKGPVRLGDIVILRETEREARKL 76
>sp|Q8PU75|RS28_METMA 30S ribosomal protein S28e OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps28e PE=3 SV=1
Length = 73
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 2 DTGGPKKATVIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESE 59
T G A VI VIG TG G+ +Q++ + ++ D R ITRN GPVR+GDIL LLE+
Sbjct: 5 STTGGFAAEVIDVIGNTGMHGEASQIQCRVLEGRDKGRVITRNCVGPVRIGDILMLLETS 64
Query: 60 REARRL 65
REA++L
Sbjct: 65 REAKKL 70
>sp|P54065|RS28_METJA 30S ribosomal protein S28e OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=rps28e PE=3 SV=2
Length = 75
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFM--DDTKRQITRNVKGPVRVGDILTLLESEREARRL 65
A VI+VIGRTG G + QVR + + DT R + RNVKGPV+VGDI+ L E+EREAR L
Sbjct: 13 AEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVKVGDIIMLRETEREARPL 71
>sp|Q8TQL8|RS28_METAC 30S ribosomal protein S28e OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rps28e PE=3
SV=1
Length = 76
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 2 DTGGPKKATVIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESE 59
T G A VI VIG TG G+ +Q++ + ++ D R ITRN GPVR+GDIL LLE+
Sbjct: 8 STIGGFAAEVIDVIGNTGMHGEASQIQCRVLEGRDKGRVITRNCVGPVRIGDILMLLETS 67
Query: 60 REARRL 65
REA++L
Sbjct: 68 REAKKL 73
>sp|A6USH4|RS28_METVS 30S ribosomal protein S28e OS=Methanococcus vannielii (strain SB
/ ATCC 35089 / DSM 1224) GN=rps28e PE=3 SV=1
Length = 76
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%), Gaps = 2/59 (3%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFM--DDTKRQITRNVKGPVRVGDILTLLESEREARRL 65
A VI+V GRTG G++ QVR + + DT R +TRNVKGPV+VGD++ L E+EREA++L
Sbjct: 13 AEVIQVSGRTGVTGEIFQVRCKILGGKDTGRILTRNVKGPVKVGDLIMLRETEREAKQL 71
>sp|Q97BK7|RS28_THEVO 30S ribosomal protein S28e OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=rps28e PE=3 SV=1
Length = 69
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 6 PKKAT---VIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESER 60
P +AT V+++IGRTG G+ T V+V+ + D R I RNV GPVRVGDIL L+E+ R
Sbjct: 2 PNEATPAEVVEIIGRTGMTGEATTVKVRILSGRDQGRIIARNVLGPVRVGDILMLMETAR 61
Query: 61 EARRL 65
EA++L
Sbjct: 62 EAKKL 66
>sp|A6UT50|RS28_META3 30S ribosomal protein S28e OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rps28e PE=3 SV=1
Length = 75
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 44/59 (74%), Gaps = 2/59 (3%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFM--DDTKRQITRNVKGPVRVGDILTLLESEREARRL 65
A V++V GRTG G++ QVR + + DT R +TRN+KGP++VGDI+ L E+EREA+ L
Sbjct: 13 AEVLQVTGRTGVTGEIFQVRCKILGGKDTGRILTRNIKGPIKVGDIIMLRETEREAKAL 71
>sp|Q6LZI8|RS28_METMP 30S ribosomal protein S28e OS=Methanococcus maripaludis (strain
S2 / LL) GN=rps28e PE=3 SV=1
Length = 76
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 45/59 (76%), Gaps = 2/59 (3%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFM--DDTKRQITRNVKGPVRVGDILTLLESEREARRL 65
A VI+V GRTG G++ QVR + + DT R +TRNVKGPV++GD++ L E+EREA++L
Sbjct: 13 AEVIQVNGRTGVTGEIFQVRCKILGGKDTGRILTRNVKGPVKLGDLIMLRETEREAKQL 71
>sp|P57711|RS28_THEAC 30S ribosomal protein S28e OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rps28e PE=3 SV=1
Length = 69
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 6 PKKAT---VIKVIGRTGSRGQVTQVRVQFMD--DTKRQITRNVKGPVRVGDILTLLESER 60
P +AT V+++IGRTG G+ T V+V+ + D R I RNV GPVRVGDIL L+E+ R
Sbjct: 2 PNEATPAEVVEIIGRTGMTGEATTVKVRVLAGRDQGRIIARNVLGPVRVGDILMLMETAR 61
Query: 61 EARRL 65
EA++L
Sbjct: 62 EAKKL 66
>sp|O29493|RS28_ARCFU 30S ribosomal protein S28e OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rps28e PE=3 SV=1
Length = 71
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 46/59 (77%), Gaps = 2/59 (3%)
Query: 9 ATVIKVIGRTGSRGQVTQVRVQFM--DDTKRQITRNVKGPVRVGDILTLLESEREARRL 65
A V++++GRTG G+VTQV+V+ + ++ R ITRNV GPV+VGDI+ + E+ REAR+L
Sbjct: 10 AEVVELVGRTGMHGEVTQVKVRVLAGENKGRVITRNVFGPVKVGDIIMIKETAREARKL 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,420,432
Number of Sequences: 539616
Number of extensions: 651636
Number of successful extensions: 1682
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1578
Number of HSP's gapped (non-prelim): 65
length of query: 66
length of database: 191,569,459
effective HSP length: 38
effective length of query: 28
effective length of database: 171,064,051
effective search space: 4789793428
effective search space used: 4789793428
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)