BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037549
         (102 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
           Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
           SYNTAXIN 5
 pdb|3EG9|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
           Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
           MEMBRIN
          Length = 770

 Score = 26.6 bits (57), Expect = 3.7,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 76  FQCSFCNMIN--ARLHFQHFTDVSK 98
           +QC FCN +N     +FQH   + +
Sbjct: 121 YQCGFCNCVNDVPPFYFQHLDHIGR 145


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.138    0.450 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,027,150
Number of Sequences: 62578
Number of extensions: 106017
Number of successful extensions: 222
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 2
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)