Query 037549
Match_columns 102
No_of_seqs 182 out of 1492
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 23:13:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3i_A Histone H3 lysine 4 spe 99.7 4.6E-17 1.6E-21 121.6 7.3 72 1-76 17-90 (293)
2 1h3i_A Histone H3 lysine 4 spe 99.6 3.2E-16 1.1E-20 117.0 7.0 71 1-75 40-114 (293)
3 2f69_A Histone-lysine N-methyl 99.4 4.1E-13 1.4E-17 99.8 6.0 48 1-48 10-60 (261)
4 2f69_A Histone-lysine N-methyl 99.1 2.1E-11 7E-16 90.6 3.8 55 16-74 2-59 (261)
5 2eqj_A Metal-response element- 29.9 82 0.0028 18.3 3.8 38 7-44 22-60 (66)
6 3lyg_A NTF2-like protein of un 20.1 86 0.003 20.3 2.9 31 15-45 79-112 (120)
7 2xdp_A Lysine-specific demethy 18.3 2E+02 0.007 18.4 4.6 13 31-43 74-86 (123)
8 2gom_A Fibrinogen-binding prot 16.8 61 0.0021 18.3 1.4 16 84-99 23-38 (61)
9 2psb_A YERB protein; structura 14.8 1.1E+02 0.0036 22.9 2.6 14 32-45 260-273 (320)
10 2qqr_A JMJC domain-containing 13.1 2.8E+02 0.0097 17.6 4.8 12 32-43 74-85 (118)
No 1
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.68 E-value=4.6e-17 Score=121.62 Aligned_cols=72 Identities=11% Similarity=0.039 Sum_probs=45.7
Q ss_pred CcceeEEEeccCCEEEEeeecCeeccceEEEecCCC-EEEEEeeCCeeccccccccccccccceeEeeeee-eheehh
Q 037549 1 MHGFGVCRFANRHWYEGAWRERIRQGLGMYTFRNGE-TQSGHRQNGLLDIPSAQNTTHLISSIAIYHYKVL-NVVQMF 76 (102)
Q Consensus 1 ~hG~G~~~~~~G~~YeG~w~~g~~~G~G~~~~~~G~-~y~G~w~~g~~~G~g~~~~~~~~~~~~~~~g~~~-~~v~~~ 76 (102)
+||+|+++|+||++|+|+|++|++||.|+++++||. +|+|+|++|++||.|+ ..++++.+|+|.|. ++..++
T Consensus 17 ~~G~G~~~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~----~~~~~G~~y~G~~~~~g~~~G 90 (293)
T 1h3i_A 17 LQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCW----IYYPDGGSLVGEVNEDGEMTG 90 (293)
T ss_dssp EEEEEEEECTTSCEEEEEEETTEEEEEEEEECSSSCEEEEEEEETTEECSEEE----EECTTSCEEEEECCTTSCSCE
T ss_pred eeEEEEEEECCCCEEEEEEECCEEEeCEEEEECCCCEEEEEEEECCEEEeeEE----EEECCCCEEEEEEeECCeEeC
Confidence 366666666666666666666666666666666666 6666666666666664 33455556666666 555543
No 2
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.64 E-value=3.2e-16 Score=117.02 Aligned_cols=71 Identities=14% Similarity=0.225 Sum_probs=63.9
Q ss_pred CcceeEEEeccCC-EEEEeeecCeeccceEEEecCCCEEEEEee-CCeeccc-cccccccccccce-eEeeeeeeheeh
Q 037549 1 MHGFGVCRFANRH-WYEGAWRERIRQGLGMYTFRNGETQSGHRQ-NGLLDIP-SAQNTTHLISSIA-IYHYKVLNVVQM 75 (102)
Q Consensus 1 ~hG~G~~~~~~G~-~YeG~w~~g~~~G~G~~~~~~G~~y~G~w~-~g~~~G~-g~~~~~~~~~~~~-~~~g~~~~~v~~ 75 (102)
+||.|+++|+||+ +|+|+|+++++||.|+++|+||.+|+|+|+ +|+++|. |+ ...+++. .|+|.|.++..+
T Consensus 40 ~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~~~~~~G~~y~G~~~~~g~~~G~gG~----~~~~~G~~~y~G~~~~g~~~ 114 (293)
T 1h3i_A 40 LNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIA----YVYPDERTALYGKFIDGEMI 114 (293)
T ss_dssp EEEEEEEECSSSCEEEEEEEETTEECSEEEEECTTSCEEEEECCTTSCSCEEEEE----EECTTSSEEEEEEEETTEEE
T ss_pred EEeCEEEEECCCCEEEEEEEECCEEEeeEEEEECCCCEEEEEEeECCeEeCCeEE----EEECCCCEEEEEEEECCEEE
Confidence 5899999999999 899999999999999999999999999999 9999999 84 4566777 599999888776
No 3
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=99.39 E-value=4.1e-13 Score=99.77 Aligned_cols=48 Identities=17% Similarity=0.166 Sum_probs=45.7
Q ss_pred CcceeEEEeccCCEEEEeee-cCeeccc-eEEEecCCCE-EEEEeeCCeec
Q 037549 1 MHGFGVCRFANRHWYEGAWR-ERIRQGL-GMYTFRNGET-QSGHRQNGLLD 48 (102)
Q Consensus 1 ~hG~G~~~~~~G~~YeG~w~-~g~~~G~-G~~~~~~G~~-y~G~w~~g~~~ 48 (102)
+||.|+++|+||++|+|+|. ++.+||. |+|+||||.+ |+|+|++|.+.
T Consensus 10 ~~G~g~~~~~dG~~y~G~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~g~~~ 60 (261)
T 2f69_A 10 RHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMI 60 (261)
T ss_dssp -CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTEEE
T ss_pred eecceEEEeCCCCEEEEEEeeCCcCccceEEEEeCCCCEEEEEEEeCCcEe
Confidence 69999999999999999999 9999999 9999999999 99999999973
No 4
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=99.14 E-value=2.1e-11 Score=90.57 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=40.9
Q ss_pred EEeeecCeeccceEEEecCCCEEEEEee-CCeeccc-ccccccccccccee-Eeeeeeehee
Q 037549 16 EGAWRERIRQGLGMYTFRNGETQSGHRQ-NGLLDIP-SAQNTTHLISSIAI-YHYKVLNVVQ 74 (102)
Q Consensus 16 eG~w~~g~~~G~G~~~~~~G~~y~G~w~-~g~~~G~-g~~~~~~~~~~~~~-~~g~~~~~v~ 74 (102)
.|+|++|++||.|+++||||.+|+|+|. +|.++|. |+ +.++++.. |+|+|.++.-
T Consensus 2 ~g~~~~~~~~G~g~~~~~dG~~y~G~~~~~~~~~G~~g~----y~y~d~~~~~~G~~~~g~~ 59 (261)
T 2f69_A 2 AMGYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIA----YVYPDERTALYGKFIDGEM 59 (261)
T ss_dssp ---------CCCEEEECTTSCEEEECCCTTSCCCEEEEE----EECTTSSEEEEEEEETTEE
T ss_pred CceecCCceecceEEEeCCCCEEEEEEeeCCcCccceEE----EEeCCCCEEEEEEEeCCcE
Confidence 3899999999999999999999999999 9999999 94 56678877 8999887743
No 5
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=29.90 E-value=82 Score=18.29 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=25.5
Q ss_pred EEeccCCEEEEeeecCe-eccceEEEecCCCEEEEEeeC
Q 037549 7 CRFANRHWYEGAWRERI-RQGLGMYTFRNGETQSGHRQN 44 (102)
Q Consensus 7 ~~~~~G~~YeG~w~~g~-~~G~G~~~~~~G~~y~G~w~~ 44 (102)
..|.||..|+|.-..=. ..|.=+..|-|+..+-=.|++
T Consensus 22 A~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~kd 60 (66)
T 2eqj_A 22 ARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKD 60 (66)
T ss_dssp EECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred EEEccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEeec
Confidence 56788888888876533 346666667777777666643
No 6
>3lyg_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE GOL; 1.61A {Colwellia psychrerythraea}
Probab=20.06 E-value=86 Score=20.31 Aligned_cols=31 Identities=6% Similarity=0.106 Sum_probs=20.8
Q ss_pred EEEeeecCeeccceE---EEecCCCEEEEEeeCC
Q 037549 15 YEGAWRERIRQGLGM---YTFRNGETQSGHRQNG 45 (102)
Q Consensus 15 YeG~w~~g~~~G~G~---~~~~~G~~y~G~w~~g 45 (102)
=+=+|..++..++-. |++.+|..|++.|--+
T Consensus 79 Seve~~~~~~~~~~~~~lf~f~~g~I~~er~~~~ 112 (120)
T 3lyg_A 79 SIVEWKSDKMIASQLSVLFKFEGDQIYEERWFVD 112 (120)
T ss_dssp EEEEEEETTEEEEEEEEEEEEETTEEEEEEEECC
T ss_pred EEEEEcCCCeeeEEEEEEEEEECCEEEEEEEEEe
Confidence 345677776655543 6778888888888543
No 7
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=18.32 E-value=2e+02 Score=18.45 Aligned_cols=13 Identities=8% Similarity=0.179 Sum_probs=6.3
Q ss_pred EecCCCEEEEEee
Q 037549 31 TFRNGETQSGHRQ 43 (102)
Q Consensus 31 ~~~~G~~y~G~w~ 43 (102)
.|.||..|.+.|.
T Consensus 74 ~W~DG~~y~a~f~ 86 (123)
T 2xdp_A 74 KWPDGKLYGAKYF 86 (123)
T ss_dssp ECTTSCEEEEEEE
T ss_pred EcCCCCEEeEEEe
Confidence 3455555554443
No 8
>2gom_A Fibrinogen-binding protein; three-helix closed bundle with LEFT-hand twist, cell adhesio complex; 1.25A {Staphylococcus aureus} SCOP: a.7.17.1 PDB: 2gox_B 3d5s_C 3d5r_C
Probab=16.83 E-value=61 Score=18.26 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=13.3
Q ss_pred hhHHHHHHhhhccccc
Q 037549 84 INARLHFQHFTDVSKM 99 (102)
Q Consensus 84 ~~a~~~~~~a~~~~~~ 99 (102)
.+++..|++|+|+-++
T Consensus 23 V~~HRKAQ~AVNLi~F 38 (61)
T 2gom_A 23 VSAHRKAQKAVNLVSF 38 (61)
T ss_dssp HHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHhhHHhH
Confidence 5689999999998765
No 9
>2psb_A YERB protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, unknown function; 2.10A {Bacillus subtilis} SCOP: c.153.1.1
Probab=14.76 E-value=1.1e+02 Score=22.88 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=10.4
Q ss_pred ecCCCEEEEEeeCC
Q 037549 32 FRNGETQSGHRQNG 45 (102)
Q Consensus 32 ~~~G~~y~G~w~~g 45 (102)
+.+|..+++.|++.
T Consensus 260 ~~~G~~~~itW~k~ 273 (320)
T 2psb_A 260 FQHGNVIETDWKQV 273 (320)
T ss_dssp EETTEEEEEEEEEE
T ss_pred EeCCEEEEeEEEeC
Confidence 67788888888765
No 10
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=13.12 E-value=2.8e+02 Score=17.62 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=5.6
Q ss_pred ecCCCEEEEEee
Q 037549 32 FRNGETQSGHRQ 43 (102)
Q Consensus 32 ~~~G~~y~G~w~ 43 (102)
|.||..|.+.|.
T Consensus 74 W~DG~~y~a~f~ 85 (118)
T 2qqr_A 74 WTDGQVYGAKFV 85 (118)
T ss_dssp CTTSCEEEEEEE
T ss_pred cCCCCEeeeEEe
Confidence 444444444443
Done!