BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037550
         (84 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin
 pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
          Length = 356

 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 1   MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFKQFTLTD 60
           +SN +Y S+ HR L N  ++ RIS AVF  P     +  P PE++S E P  F   T   
Sbjct: 278 LSNGKYKSILHRGLVNK-EKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQ 336

Query: 61  YLR-RVFTKE 69
           ++  ++F KE
Sbjct: 337 HIEHKLFGKE 346


>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Naringenin
          Length = 355

 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 1   MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFKQFTLTD 60
           +SN +Y S+ HR L N  ++ RIS AVF  P     +  P PE++S E P  F   T   
Sbjct: 277 LSNGKYKSILHRGLVNK-EKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQ 335

Query: 61  YLR-RVFTKE 69
           ++  ++F KE
Sbjct: 336 HIEHKLFGKE 345


>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
           (Selenomethionine Substituted)
          Length = 356

 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 1   MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFKQFTLTD 60
           +SN +Y S+ HR L N  ++ RIS AVF  P     +  P PE +S E P  F   T   
Sbjct: 278 LSNGKYKSILHRGLVNK-EKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQ 336

Query: 61  YLR-RVFTKE 69
           ++  ++F KE
Sbjct: 337 HIEHKLFGKE 346


>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
 pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
          Length = 319

 Score = 34.3 bits (77), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 1   MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELI---SPEKPTCFKQFT 57
           ++N +Y SV HRV+A      R S A F+NP +   +Y P P L+   + E    + +F 
Sbjct: 224 ITNGKYKSVXHRVIAQK-DGARXSLASFYNPGSDAVIY-PAPALVEKEAEENKQVYPKFV 281

Query: 58  LTDYLR 63
             DY +
Sbjct: 282 FDDYXK 287


>pdb|1REQ|B Chain B, Methylmalonyl-Coa Mutase
 pdb|1REQ|D Chain D, Methylmalonyl-Coa Mutase
 pdb|2REQ|B Chain B, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
          Open Conformation Representing Substrate-Free State
 pdb|2REQ|D Chain D, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
          Open Conformation Representing Substrate-Free State
 pdb|3REQ|B Chain B, Methylmalonyl-Coa Mutase, Substrate-Free State (Poor
          Quality Structure)
 pdb|6REQ|B Chain B, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
          Complex
 pdb|6REQ|D Chain D, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
          Complex
 pdb|7REQ|B Chain B, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
          Complex
 pdb|7REQ|D Chain D, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
          Complex
 pdb|4REQ|B Chain B, Methylmalonyl-Coa Mutase Substrate Complex
 pdb|4REQ|D Chain D, Methylmalonyl-Coa Mutase Substrate Complex
 pdb|5REQ|B Chain B, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
 pdb|5REQ|D Chain D, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
 pdb|1E1C|B Chain B, Methylmalonyl-Coa Mutase H244a Mutant
 pdb|1E1C|D Chain D, Methylmalonyl-Coa Mutase H244a Mutant
          Length = 637

 Score = 26.2 bits (56), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 54 KQFTLTDYLRRVFTKELDGKSLVNYYRLPDA 84
          KQ T  + L+R+    +DG  +V  YR  DA
Sbjct: 50 KQLTFAECLKRLTVHTVDGIDIVPMYRPKDA 80


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,720,024
Number of Sequences: 62578
Number of extensions: 96515
Number of successful extensions: 127
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 5
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)