Query 037550
Match_columns 84
No_of_seqs 103 out of 1032
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 23:15:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w9y_A 1-aminocyclopropane-1-c 99.9 9E-24 3.1E-28 149.6 2.5 80 1-82 224-307 (319)
2 1gp6_A Leucoanthocyanidin diox 99.9 1E-22 3.4E-27 145.9 4.3 72 1-74 278-350 (356)
3 3oox_A Putative 2OG-Fe(II) oxy 99.8 8.3E-22 2.8E-26 138.8 4.9 67 1-68 238-308 (312)
4 1odm_A Isopenicillin N synthas 99.8 2E-20 6.9E-25 132.7 6.4 66 1-70 260-325 (331)
5 1dcs_A Deacetoxycephalosporin 99.8 6.8E-21 2.3E-25 134.2 0.5 67 1-70 233-306 (311)
6 3on7_A Oxidoreductase, iron/as 99.6 8.3E-16 2.8E-20 107.0 4.4 54 1-69 221-277 (280)
7 2rg4_A Uncharacterized protein 80.1 1.2 4.1E-05 29.3 2.6 25 9-33 185-209 (216)
8 2vf9_A Coat protein; virion, R 75.3 1.3 4.6E-05 26.4 1.6 14 2-15 53-66 (131)
9 3plx_A Aspartate 1-decarboxyla 45.1 12 0.00041 16.9 1.5 13 5-17 8-20 (27)
10 1vc3_A L-aspartate-alpha-decar 43.5 13 0.00046 16.6 1.5 13 5-17 5-17 (26)
11 1uhe_B Aspartate 1-decarboxyla 43.1 14 0.00047 16.6 1.5 13 5-17 5-17 (26)
12 3dl3_A Tellurite resistance pr 27.1 53 0.0018 19.8 2.7 23 9-33 80-102 (119)
13 2op5_A Hypothetical protein; f 23.0 1.1E+02 0.0037 17.7 3.4 28 4-33 47-74 (117)
No 1
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=99.88 E-value=9e-24 Score=149.59 Aligned_cols=80 Identities=29% Similarity=0.495 Sum_probs=68.8
Q ss_pred CCCcceeeeeeeeecCCCCCCceeEEEEeCCCCCcccccCCCcCCCCC---CCccccccchHHHHHHHhhhccCCccc-e
Q 037550 1 MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPE---KPTCFKQFTLTDYLRRVFTKELDGKSL-V 76 (84)
Q Consensus 1 ~SNg~~~S~~HRVv~~~~~~~R~S~~~F~~p~~~d~~i~pl~~~~~~~---~~~~y~~~~~~ey~~~~~~~~~~~~~~-l 76 (84)
||||+|||++|||++++. ++|+|++||++|+. |+.|+|++++++++ +|++|++++++||+..++...+.++.. +
T Consensus 224 ~SnG~~kS~~HRVv~~~~-~~R~Sia~F~~p~~-d~~i~pl~~l~~~~~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~ 301 (319)
T 1w9y_A 224 ITNGKYKSVMHRVIAQKD-GARMSLASFYNPGS-DAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEPRF 301 (319)
T ss_dssp HTTTSSCCCCEEECCCSS-SCCEEEEEEEECCT-TCEECCCGGGC--------CCCCCEEHHHHHHTTTTTTCSSHHHHH
T ss_pred HhCCeeecccceecCCCC-CCceEEEEEecCCC-CCeEeCchhhcCcccccCccccCcEeHHHHHHHHHhhhcCcchhHH
Confidence 899999999999999888 89999999999999 99999999999987 599999999999999999988877765 6
Q ss_pred eeecCC
Q 037550 77 NYYRLP 82 (84)
Q Consensus 77 ~~~~~~ 82 (84)
+.+|+.
T Consensus 302 ~~~~~~ 307 (319)
T 1w9y_A 302 EAMKAM 307 (319)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 766653
No 2
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=99.86 E-value=1e-22 Score=145.90 Aligned_cols=72 Identities=33% Similarity=0.498 Sum_probs=67.2
Q ss_pred CCCcceeeeeeeeecCCCCCCceeEEEEeCCCCCcc-cccCCCcCCCCCCCccccccchHHHHHHHhhhccCCcc
Q 037550 1 MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDR-LYGPFPELISPEKPTCFKQFTLTDYLRRVFTKELDGKS 74 (84)
Q Consensus 1 ~SNg~~~S~~HRVv~~~~~~~R~S~~~F~~p~~~d~-~i~pl~~~~~~~~~~~y~~~~~~ey~~~~~~~~~~~~~ 74 (84)
||||+|||++|||++++. ++|+|++||++|+. |+ .|+|+++++++++|++|++++++||+..++...++++.
T Consensus 278 ~TnG~~kS~~HRVv~~~~-~~R~Sia~F~~P~~-d~~~i~pl~~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~ 350 (356)
T 1gp6_A 278 LSNGKYKSILHRGLVNKE-KVRISWAVFCEPPK-DKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEEL 350 (356)
T ss_dssp HTTTSSCCCCEEECCCSS-CCEEEEEEEEECCT-TTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHHHHHHHHHC
T ss_pred hcCCEeeccCceecCCCC-CCEEEEEEeecCCC-CCcEEeCChhhcCCCCCccCCCccHHHHHHHHHHhccCcch
Confidence 899999999999999888 89999999999999 99 99999999999999999999999999998888765543
No 3
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=99.84 E-value=8.3e-22 Score=138.78 Aligned_cols=67 Identities=21% Similarity=0.371 Sum_probs=61.8
Q ss_pred CCCcceeeeeeeeecCCC---CCCceeEEEEeCCCCCcccccCCCcCCCCCCCcccc-ccchHHHHHHHhhh
Q 037550 1 MSNDEYISVEHRVLANSF---QEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFK-QFTLTDYLRRVFTK 68 (84)
Q Consensus 1 ~SNg~~~S~~HRVv~~~~---~~~R~S~~~F~~p~~~d~~i~pl~~~~~~~~~~~y~-~~~~~ey~~~~~~~ 68 (84)
||||+|+|++|||++++. +.+|+|++||++|+. |+.|+|+++|+++++|++|+ +++++||+..++..
T Consensus 238 ~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~-d~~i~pl~~~v~~~~p~~y~~~~t~~eyl~~r~~~ 308 (312)
T 3oox_A 238 LTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFAS-DYEIKTLQNCVTAENPDRYPESITADEFLQQRLRE 308 (312)
T ss_dssp HTTTSSCCCCEEECCCCGGGTTSCEEECCEEECCCT-TCEECCCGGGCCSSSCCSCSSCEEHHHHHHHHHHH
T ss_pred HhCCeecCCCceEeCCCccCCCCCEEEEEEEecCCC-CcEEecCccccCCCCcccCCCCeeHHHHHHHHHHH
Confidence 899999999999987641 268999999999999 99999999999999999999 99999999998874
No 4
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=99.81 E-value=2e-20 Score=132.68 Aligned_cols=66 Identities=24% Similarity=0.277 Sum_probs=61.0
Q ss_pred CCCcceeeeeeeeecCCCCCCceeEEEEeCCCCCcccccCCCcCCCCCCCccccccchHHHHHHHhhhcc
Q 037550 1 MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFKQFTLTDYLRRVFTKEL 70 (84)
Q Consensus 1 ~SNg~~~S~~HRVv~~~~~~~R~S~~~F~~p~~~d~~i~pl~~~~~~~~~~~y~~~~~~ey~~~~~~~~~ 70 (84)
||||+|||++|||+++ . ++|+|++||++|+. |+.|+|+++++++++ ++|++++++||+..++++.+
T Consensus 260 ~TnG~~kS~~HRVv~~-~-~~R~Sia~F~~P~~-d~~i~pl~~~~~~~~-~~y~~~t~~e~l~~~~~~~~ 325 (331)
T 1odm_A 260 LTNNYYKAPIHRVKWV-N-AERQSLPFFVNLGY-DSVIDPFDPREPNGK-SDREPLSYGDYLQNGLVSLI 325 (331)
T ss_dssp HTTTSSCCCCEEEECC-C-SCEEEEEEEECCCT-TCBCCCCCTTSTTCC-CSSCCCBHHHHHHHHHHHHH
T ss_pred HhCCEeeCCCceeCCC-C-CCEEEEEEEEcCCC-CCEEeCCCccccccc-cCCCCccHHHHHHHHHHHHH
Confidence 8999999999999964 5 89999999999999 999999999998877 89999999999999887654
No 5
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=99.79 E-value=6.8e-21 Score=134.25 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=61.8
Q ss_pred CCCcceeeeeeeeecCC-----CCCCceeEEEEeCCCCCcccccCCCcCCCCCCCccc--cccchHHHHHHHhhhcc
Q 037550 1 MSNDEYISVEHRVLANS-----FQEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCF--KQFTLTDYLRRVFTKEL 70 (84)
Q Consensus 1 ~SNg~~~S~~HRVv~~~-----~~~~R~S~~~F~~p~~~d~~i~pl~~~~~~~~~~~y--~~~~~~ey~~~~~~~~~ 70 (84)
||||+|||+.|||++++ . ++|+|++||++|+. |+.|+ +++++++++|++| ++++++||+..++...+
T Consensus 233 ~TnG~~kS~~HRVv~~~~~~~~~-~~R~Si~~F~~p~~-d~~i~-l~~~~~~~~p~~y~~~~~t~~ey~~~~~~~~~ 306 (311)
T 1dcs_A 233 VTGGQVKAPRHHVAAPRRDQIAG-SSRTSSVFFLRPNA-DFTFS-VPLARECGFDVSLDGETATFQDWIGGNYVNIR 306 (311)
T ss_dssp HTTSCSCCCCEEECCC----CTT-CCEEEEEEEECCCT-TCEEE-HHHHHHTTCCCCCCSSEEEHHHHHCSSCCCEE
T ss_pred HhCCcccCCCceEeCCCcccCCC-CCeEEEEEEEcCCC-CcEEe-CCcccCCCCccccCCCCccHHHHHHHHHHHHh
Confidence 89999999999999987 5 89999999999999 99999 9999998899999 99999999998877665
No 6
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=99.58 E-value=8.3e-16 Score=106.99 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=47.5
Q ss_pred CCCcceeeeeeeeecCCC---CCCceeEEEEeCCCCCcccccCCCcCCCCCCCccccccchHHHHHHHhhhc
Q 037550 1 MSNDEYISVEHRVLANSF---QEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFKQFTLTDYLRRVFTKE 69 (84)
Q Consensus 1 ~SNg~~~S~~HRVv~~~~---~~~R~S~~~F~~p~~~d~~i~pl~~~~~~~~~~~y~~~~~~ey~~~~~~~~ 69 (84)
||||+|||+.|||++++. ..+|||++||++|+. |++|.| ++|++||+..+++..
T Consensus 221 ~Tng~~kS~~HRVv~~~~~~~~~~R~Si~~F~~P~~-d~~i~p--------------~ita~~~l~~rl~~~ 277 (280)
T 3on7_A 221 ASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHP-SVVLSE--------------RYTADSYLMERLREL 277 (280)
T ss_dssp HTTTSSCCCCEEEECCTTCCTTSCEEECCEEECCCT-TCBCSS--------------SCBHHHHHHHHHHHT
T ss_pred HhCCcccCCCceEeCCCCCCCCCCeEEEEEEEcCCC-CCEECC--------------CccHHHHHHHHHHHh
Confidence 899999999999998742 269999999999999 999985 489999999988753
No 7
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=80.15 E-value=1.2 Score=29.31 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=18.3
Q ss_pred eeeeeecCCCCCCceeEEEEeCCCC
Q 037550 9 VEHRVLANSFQEPRISAAVFFNPTN 33 (84)
Q Consensus 9 ~~HRVv~~~~~~~R~S~~~F~~p~~ 33 (84)
-.|.|..+..+.+|+||+|.+.+..
T Consensus 185 l~H~V~p~~~~~~RiSIsFN~~~~~ 209 (216)
T 2rg4_A 185 LRHEVPMNMAEEDRISVSFNYAWGE 209 (216)
T ss_dssp SCEEECCCCSSSCEEEEEEEEEC--
T ss_pred CEEeccCCCCCCCEEEEEEEeecCC
Confidence 4688887554379999999988765
No 8
>2vf9_A Coat protein; virion, RNA-binding, capsid protein, structural protein, virus; 3.50A {Bacteriophage PRR1}
Probab=75.31 E-value=1.3 Score=26.39 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=12.2
Q ss_pred CCcceeeeeeeeec
Q 037550 2 SNDEYISVEHRVLA 15 (84)
Q Consensus 2 SNg~~~S~~HRVv~ 15 (84)
|||+|||++.-|+.
T Consensus 53 sngrykstlklvvp 66 (131)
T 2vf9_A 53 SNGRYKSTLKLVVP 66 (131)
T ss_dssp TTSEEEEEEEEEEE
T ss_pred CCCceeeeEEEEEE
Confidence 89999999988764
No 9
>3plx_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=45.09 E-value=12 Score=16.92 Aligned_cols=13 Identities=23% Similarity=0.064 Sum_probs=10.5
Q ss_pred ceeeeeeeeecCC
Q 037550 5 EYISVEHRVLANS 17 (84)
Q Consensus 5 ~~~S~~HRVv~~~ 17 (84)
.++|-+||+.+..
T Consensus 8 ~LksKiHratVT~ 20 (27)
T 3plx_A 8 LLKSKIHRASVTE 20 (27)
T ss_dssp EEEEEEEEEECCE
T ss_pred HHHHhhhceEEec
Confidence 5789999998754
No 10
>1vc3_A L-aspartate-alpha-decarboxylase light chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_A
Probab=43.48 E-value=13 Score=16.62 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=10.6
Q ss_pred ceeeeeeeeecCC
Q 037550 5 EYISVEHRVLANS 17 (84)
Q Consensus 5 ~~~S~~HRVv~~~ 17 (84)
.++|-+||+.+..
T Consensus 5 ~lksKiHratVT~ 17 (26)
T 1vc3_A 5 MFHAKIHRATVTQ 17 (26)
T ss_dssp EEEEEEEEEECCE
T ss_pred HhhhhhcceEEec
Confidence 5789999998764
No 11
>1uhe_B Aspartate 1-decarboxylase beta chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_B*
Probab=43.11 E-value=14 Score=16.59 Aligned_cols=13 Identities=23% Similarity=0.125 Sum_probs=10.6
Q ss_pred ceeeeeeeeecCC
Q 037550 5 EYISVEHRVLANS 17 (84)
Q Consensus 5 ~~~S~~HRVv~~~ 17 (84)
.++|-+||+.+..
T Consensus 5 ~lksKiHratVT~ 17 (26)
T 1uhe_B 5 MLYSKIHRATITD 17 (26)
T ss_dssp EEEEEEEEEECCE
T ss_pred HhhhhhcceEEec
Confidence 5789999998764
No 12
>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13
Probab=27.13 E-value=53 Score=19.77 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=17.2
Q ss_pred eeeeeecCCCCCCceeEEEEeCCCC
Q 037550 9 VEHRVLANSFQEPRISAAVFFNPTN 33 (84)
Q Consensus 9 ~~HRVv~~~~~~~R~S~~~F~~p~~ 33 (84)
.+|||. .+. .-|+-+-|++.|..
T Consensus 80 ~wHrVe-~sd-D~~f~leFyc~~~d 102 (119)
T 3dl3_A 80 YWHRIE-LSD-DAQFNINFWSDQDK 102 (119)
T ss_dssp CEEEEE-ECT-TCEEEEEEEECC--
T ss_pred ceEEEE-ECC-CeEEEEEEEECchH
Confidence 579999 555 68999999998876
No 13
>2op5_A Hypothetical protein; ferredoxin-like protein, structural genomics, joint center F structural genomics, JCSG; 2.20A {Uncultured marine organism} SCOP: d.58.4.22
Probab=22.96 E-value=1.1e+02 Score=17.67 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=17.8
Q ss_pred cceeeeeeeeecCCCCCCceeEEEEeCCCC
Q 037550 4 DEYISVEHRVLANSFQEPRISAAVFFNPTN 33 (84)
Q Consensus 4 g~~~S~~HRVv~~~~~~~R~S~~~F~~p~~ 33 (84)
|.++-+.-.|- +.+ +.|+|++|-+....
T Consensus 47 glirhviskvw-nke-qhrismvfeydske 74 (117)
T 2op5_A 47 GLIRHVISKVW-NKE-QHRISMVFEYDSKE 74 (117)
T ss_dssp TEEEEEEEEEC-CTT-CCEEEEEEEESCHH
T ss_pred hHHHHHHHHHh-hhh-hceeEEEEEeccHh
Confidence 44454554554 345 79999999885443
Done!