BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037552
         (542 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6DCY9|HAUS3_XENLA HAUS augmin-like complex subunit 3 OS=Xenopus laevis GN=haus3 PE=2
           SV=1
          Length = 597

 Score = 53.5 bits (127), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 121/274 (44%), Gaps = 38/274 (13%)

Query: 292 SETIPALCWELAQLQDTYILQGDYDLKVMRKEFYISRQKVFIAHLINHLARHQFLNIACQ 351
           +E +P L  + AQL +  I++GDYDL++  +    SRQ +   HL+   A  + L +  +
Sbjct: 331 NEKLPGLVRDNAQLLNMPIVKGDYDLQMAHQTSCSSRQDLVCDHLMKQKASFELLQLGYE 390

Query: 352 LEKKNLFGAYSLLKVIESELQAAAGKQEQ-----------------GAVDDQDTFLHGVR 394
           LE +     Y  L  I  EL+ +  K E+                   +D +D   H + 
Sbjct: 391 LELRKHRDVYRELGSIVQELKESGDKLEERLTMLSDVNLLSASKPRSNIDSKDLTSHRLY 450

Query: 395 DLLSSHSNTQAGLSTYVSAPRIVQQISSLHSDLMTLQSDLKNSLPQDIKCINEL------ 448
            LL    NTQ    TY     + Q++S    D+ +++  L+ S  +    +++L      
Sbjct: 451 QLLDG-DNTQKLFRTYDGLESVAQKLS---QDIASMRDQLEVSEQEHSLLLSKLDSHLKE 506

Query: 449 LQQLLFPSSTTAQLILAPCALMKEL----DGIEKINAKLSAAVEEATLEHCKKSEIIKHH 504
           L+  ++P   T  L+L    L  E       +EK+N      VE       K+  +  + 
Sbjct: 507 LRDFMYPEGNT--LMLTTPELSGEFHQLGSQLEKLN---HITVEILGDLQLKRKMLESNK 561

Query: 505 SQEVGLQRRVFVDFVCSPERLRSQVPELTARVRG 538
            Q++  +++++V F  + E+L+S V +L A+  G
Sbjct: 562 LQQI--EKQLYVYFFQNEEQLKSIVGKLEAQTGG 593


>sp|Q68CZ6|HAUS3_HUMAN HAUS augmin-like complex subunit 3 OS=Homo sapiens GN=HAUS3 PE=1
           SV=1
          Length = 603

 Score = 49.7 bits (117), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 98/215 (45%), Gaps = 19/215 (8%)

Query: 157 WFAKQFDTGPCQVVAEEGKSECSRASLDDASNILVRDVENSRHQRVSELQWLRLMFGCIF 216
           +  KQF  G  +VV  E  +E +   LD  +  +  + E    +R   L+  RL    I 
Sbjct: 217 YTKKQFFQGIHEVV--ESSNEDNFQLLDIQTPSICDNQEILEERR---LEMARLQLAYI- 270

Query: 217 YCRHHTFYHVFFRYTSTFRPLFKNVTKTMLRALFSLVDLASDEAHIHLDRHLLKKKHVEL 276
            C  H   H+    +S      K+  K    +L SL   A       +D+  L  K   L
Sbjct: 271 -CAQHQLIHLKASNSS-----MKSSIKWAEESLHSLTSKA-------VDKENLDAKISSL 317

Query: 277 VGELSNLYLTEKKLLSETIPALCWELAQLQDTYILQGDYDLKVMRKEFYISRQKVFIAHL 336
             E+  L     ++   ++PA+  E AQL +  +++GD+DL++ ++++Y +RQ++ +  L
Sbjct: 318 TSEIMKLEKEVTQIKDRSLPAVVRENAQLLNMPVVKGDFDLQIAKQDYYTARQELVLNQL 377

Query: 337 INHLARHQFLNIACQLEKKNLFGAYSLLKVIESEL 371
           I   A  + L ++ ++E +     Y  L+ +  EL
Sbjct: 378 IKQKASFELLQLSYEIELRKHRDIYRQLENLVQEL 412


>sp|Q8QZX2|HAUS3_MOUSE HAUS augmin-like complex subunit 3 OS=Mus musculus GN=Haus3 PE=2
           SV=1
          Length = 570

 Score = 45.1 bits (105), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 49/79 (62%)

Query: 293 ETIPALCWELAQLQDTYILQGDYDLKVMRKEFYISRQKVFIAHLINHLARHQFLNIACQL 352
           + +PA+  E AQL +  +++GD++L++ ++++Y +RQ++ +  LI   A  + + ++ ++
Sbjct: 334 KVLPAVVKEYAQLLNMPVVKGDFELQIAKQDYYTARQELVLNELIKQKASFELVQLSYEI 393

Query: 353 EKKNLFGAYSLLKVIESEL 371
           E +  +  Y  L+ +  +L
Sbjct: 394 ELRKHWDTYRQLESLVQQL 412


>sp|Q8UD28|DER_AGRT5 GTPase Der OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
           GN=der PE=3 SV=1
          Length = 476

 Score = 33.1 bits (74), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 3   RFLEEEKLLEGEDLESAHDSISAFSSSRGNQDDIFGTEEVRLKAIRVSTLAYKAEAVELQ 62
           RFL E++LL G +     DSIS     RG    +F T  +R KA     +  K E + + 
Sbjct: 223 RFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRKA----KVTEKLEKLSVA 278

Query: 63  KQLRHLQSQFDVLTAHGSTL 82
             LR ++    V+    ST+
Sbjct: 279 DSLRSIRFAETVVIVFDSTI 298


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.133    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,012,021
Number of Sequences: 539616
Number of extensions: 7153458
Number of successful extensions: 20401
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 20377
Number of HSP's gapped (non-prelim): 72
length of query: 542
length of database: 191,569,459
effective HSP length: 122
effective length of query: 420
effective length of database: 125,736,307
effective search space: 52809248940
effective search space used: 52809248940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)