Query 037552
Match_columns 542
No_of_seqs 63 out of 65
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 13:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14932 HAUS-augmin3: HAUS au 100.0 3E-41 6.4E-46 338.1 15.0 205 1-226 33-251 (256)
2 PF00038 Filament: Intermediat 83.2 40 0.00087 34.7 14.9 85 49-133 54-141 (312)
3 PRK11637 AmiB activator; Provi 76.2 1.2E+02 0.0027 33.0 18.3 82 43-124 48-129 (428)
4 PF14932 HAUS-augmin3: HAUS au 73.5 19 0.00042 36.8 9.0 80 43-125 69-148 (256)
5 KOG2817 Predicted E3 ubiquitin 70.8 55 0.0012 36.0 11.9 171 104-366 74-246 (394)
6 PRK10884 SH3 domain-containing 60.9 66 0.0014 32.3 9.6 26 48-73 92-117 (206)
7 PF12252 SidE: Dot/Icm substra 59.8 3.1E+02 0.0068 34.2 16.0 172 281-502 956-1152(1439)
8 PF04201 TPD52: Tumour protein 55.5 84 0.0018 30.7 9.0 82 43-129 30-111 (162)
9 PF08614 ATG16: Autophagy prot 53.8 42 0.00092 32.7 6.9 73 52-124 98-170 (194)
10 PF13870 DUF4201: Domain of un 53.7 1E+02 0.0022 29.5 9.4 108 194-334 55-163 (177)
11 PF15397 DUF4618: Domain of un 52.7 2.2E+02 0.0047 29.8 12.0 54 63-116 38-99 (258)
12 PF12718 Tropomyosin_1: Tropom 52.0 2E+02 0.0044 27.1 10.8 90 43-132 22-114 (143)
13 COG4372 Uncharacterized protei 46.1 1.6E+02 0.0035 32.7 10.1 71 43-113 75-145 (499)
14 COG4942 Membrane-bound metallo 45.5 4.8E+02 0.01 29.2 14.8 109 43-158 39-152 (420)
15 PF04108 APG17: Autophagy prot 43.4 4.8E+02 0.01 28.6 14.6 111 37-158 118-230 (412)
16 KOG2391 Vacuolar sorting prote 40.7 1.2E+02 0.0025 33.0 8.1 21 136-163 329-349 (365)
17 PRK04863 mukB cell division pr 40.5 5.5E+02 0.012 33.2 15.1 265 40-327 375-704 (1486)
18 PF02403 Seryl_tRNA_N: Seryl-t 38.1 2E+02 0.0043 25.2 8.0 69 49-117 29-100 (108)
19 PF04740 LXG: LXG domain of WX 37.0 1.7E+02 0.0037 28.2 8.2 41 88-128 142-182 (204)
20 cd07603 BAR_ACAPs The Bin/Amph 36.9 1.6E+02 0.0034 29.3 8.0 100 49-156 2-108 (200)
21 PF07106 TBPIP: Tat binding pr 35.5 1.5E+02 0.0033 28.1 7.4 64 44-123 74-137 (169)
22 PF12325 TMF_TATA_bd: TATA ele 35.0 3.6E+02 0.0077 25.0 9.4 77 44-124 18-94 (120)
23 cd07637 BAR_ACAP3 The Bin/Amph 34.0 1.8E+02 0.004 29.0 7.9 46 111-156 56-108 (200)
24 PF04111 APG6: Autophagy prote 33.8 3E+02 0.0065 29.2 9.9 41 43-83 44-84 (314)
25 COG1196 Smc Chromosome segrega 32.8 3.1E+02 0.0067 34.1 11.1 129 51-181 392-532 (1163)
26 PF06120 Phage_HK97_TLTM: Tail 32.2 2.2E+02 0.0047 30.4 8.5 36 43-78 75-110 (301)
27 KOG0612 Rho-associated, coiled 31.6 1.2E+03 0.026 29.8 25.9 80 46-129 469-549 (1317)
28 KOG0804 Cytoplasmic Zn-finger 30.7 2.2E+02 0.0048 32.1 8.4 48 88-135 407-454 (493)
29 PF14988 DUF4515: Domain of un 30.3 4.8E+02 0.01 26.1 10.2 40 91-130 145-184 (206)
30 PF15619 Lebercilin: Ciliary p 29.9 4.9E+02 0.011 25.9 10.1 85 44-128 21-108 (194)
31 COG3883 Uncharacterized protei 27.7 2E+02 0.0042 30.3 7.1 82 52-135 34-115 (265)
32 COG0172 SerS Seryl-tRNA synthe 27.0 1.9E+02 0.0041 32.3 7.3 77 49-125 29-109 (429)
33 PF13851 GAS: Growth-arrest sp 26.7 4.4E+02 0.0096 26.2 9.2 70 50-119 101-171 (201)
34 cd07638 BAR_ACAP2 The Bin/Amph 26.4 2.7E+02 0.0058 28.0 7.6 45 109-153 54-105 (200)
35 COG3883 Uncharacterized protei 25.4 4.4E+02 0.0095 27.8 9.1 69 50-118 39-107 (265)
36 PHA03386 P10 fibrous body prot 24.7 1.6E+02 0.0035 26.3 5.0 38 45-82 8-45 (94)
37 PF08317 Spc7: Spc7 kinetochor 24.3 4.5E+02 0.0097 27.8 9.2 19 114-132 274-292 (325)
38 PF15466 DUF4635: Domain of un 24.2 1.5E+02 0.0033 27.7 4.9 37 38-75 80-124 (135)
39 PF09006 Surfac_D-trimer: Lung 23.9 53 0.0011 25.8 1.7 18 523-540 2-19 (46)
40 PRK05431 seryl-tRNA synthetase 23.7 2.7E+02 0.0058 30.8 7.7 33 49-81 28-60 (425)
41 PF08647 BRE1: BRE1 E3 ubiquit 23.7 4.9E+02 0.011 22.8 8.0 73 58-130 5-80 (96)
42 PF11887 DUF3407: Protein of u 23.7 5.7E+02 0.012 26.4 9.7 104 12-133 11-115 (267)
43 PLN02678 seryl-tRNA synthetase 23.6 3.2E+02 0.007 30.6 8.3 98 13-133 12-109 (448)
44 PF06698 DUF1192: Protein of u 23.5 1.6E+02 0.0035 24.2 4.5 32 43-74 22-53 (59)
45 PF04111 APG6: Autophagy prote 23.3 5.6E+02 0.012 27.2 9.7 43 43-85 51-93 (314)
46 PF12126 DUF3583: Protein of u 23.2 3.1E+02 0.0067 29.4 7.6 53 93-145 59-114 (324)
47 TIGR00414 serS seryl-tRNA synt 22.3 3.1E+02 0.0067 30.2 7.9 32 49-80 30-61 (418)
48 COG0497 RecN ATPase involved i 21.7 1.3E+03 0.028 26.8 15.2 37 265-301 350-386 (557)
49 PF07851 TMPIT: TMPIT-like pro 21.6 4.4E+02 0.0096 28.5 8.5 74 48-128 3-80 (330)
50 cd07601 BAR_APPL The Bin/Amphi 21.2 4.2E+02 0.0092 26.9 7.9 106 51-164 4-116 (215)
51 PF12777 MT: Microtubule-bindi 21.1 7.4E+02 0.016 26.4 10.2 41 43-83 236-276 (344)
52 COG4942 Membrane-bound metallo 20.4 3.6E+02 0.0078 30.2 7.8 70 49-122 38-107 (420)
53 TIGR02231 conserved hypothetic 20.4 5.3E+02 0.011 28.9 9.3 39 43-81 72-110 (525)
No 1
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=100.00 E-value=3e-41 Score=338.08 Aligned_cols=205 Identities=27% Similarity=0.312 Sum_probs=180.4
Q ss_pred ChhhhhhhcccCccchHHHHhhcccccCCCCCCCCccchhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 037552 1 YERFLEEEKLLEGEDLESAHDSISAFSSSRGNQDDIFGTEEVRLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGS 80 (542)
Q Consensus 1 f~~L~~sGKiLeg~aLdeal~t~~~~~~~~~~~~~~~~~~e~~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as 80 (542)
|++|+++||||||+|||+||++|++++++.+ +++| .++++|++|+++|+++++++++++|+|+.+++
T Consensus 33 ~~~L~~~GkiLeg~~Ld~aL~~~~~~~~~~~-----------~~~e--~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~ 99 (256)
T PF14932_consen 33 FEELQKSGKILEGEALDEALKTISAFSPKLL-----------ELEE--EDLEALEEELEALQEYKELYEQLRNKLQQLDS 99 (256)
T ss_pred HHHHHHcCCcCCHHHHHHHHHHcccccCCcc-----------ccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999988 5555 68899999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHh----hccc--c------cccCChhhhccCc
Q 037552 81 TLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERISSTAQDLAL----YHSG--E------AYSNFHPFLLGDP 148 (542)
Q Consensus 81 ~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~~~v~eL~~----~~s~--~------Sq~dL~~Yl~~Ee 148 (542)
+++|....+..+.+++..++++....+.+.|.++|+.|+.|++.|.++++ +|+| + ||+||++|+++|+
T Consensus 100 ~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~~~~~~~~~~~~~~~~~flsq~~l~~Y~~~ee 179 (256)
T PF14932_consen 100 SLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLASELAHAHSGQQQNPPVFLSQMPLEQYLSQEE 179 (256)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCchhhhCCHHHHHHHHH
Confidence 99999999999999999999999998887666666666655555555554 4445 2 9999999999999
Q ss_pred hhHHHHHHHHHhhcccccccccccCCcccccccccccchh-hhccc-cchhhhhhhhHHHHHHHhhhhhhhhcccchhhh
Q 037552 149 SCIKELNQWFAKQFDTGPCQVVAEEGKSECSRASLDDASN-ILVRD-VENSRHQRVSELQWLRLMFGCIFYCRHHTFYHV 226 (542)
Q Consensus 149 ~~TkaL~~y~kKQFf~Gi~~lv~~E~s~~~~f~~L~D~~~-~~~~~-~e~~~~~r~~EL~RLq~~~~~~yicaq~qli~~ 226 (542)
+||++|+.|||||||+||+++| |+++.++|+ +.|+++ +.++| .+..++++. ||+|||++ ||||+||+|.+
T Consensus 180 ~~t~~L~~y~kKqF~~g~~~~~--e~s~~~~~~-lld~~~~~~~~d~~e~~~~~~~-EL~rLq~~----~~~aq~q~I~~ 251 (256)
T PF14932_consen 180 QFTKYLTSYTKKQFFQGISELV--ESSNEDNFQ-LLDISNPSIRGDEEEVLEERRS-ELARLQSA----YICAQHQLIQA 251 (256)
T ss_pred HHHHHHHHHHHHhcccccchhh--ccccchhhH-HhhccccccccchHHHHHHHHH-HHHHHHHH----HHHHHHHHHHH
Confidence 9999999999999999999999 999999999 888988 67744 455545555 99999999 99999999998
No 2
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=83.21 E-value=40 Score=34.69 Aligned_cols=85 Identities=12% Similarity=0.131 Sum_probs=51.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhch---hhhhhhHHhhhhHHHHHHHHHHHHHH
Q 037552 49 VSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGH---LTTLDDSLSARNLQMNAVLERISSTA 125 (542)
Q Consensus 49 ~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~---lk~~~~~l~a~N~k~N~~L~~L~~~v 125 (542)
.++..++..|..+.+.+..+.-.++.+..-+..+........+....+... ++..-+.-......+.+-++.|.+..
T Consensus 54 ~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl 133 (312)
T PF00038_consen 54 EELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEEL 133 (312)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 356677777777777777777777777777766655544333333333332 33333344555666777777777766
Q ss_pred HHHHhhcc
Q 037552 126 QDLALYHS 133 (542)
Q Consensus 126 ~eL~~~~s 133 (542)
.-+-..|.
T Consensus 134 ~fl~~~he 141 (312)
T PF00038_consen 134 EFLKQNHE 141 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhh
Confidence 66655555
No 3
>PRK11637 AmiB activator; Provisional
Probab=76.16 E-value=1.2e+02 Score=32.97 Aligned_cols=82 Identities=18% Similarity=0.157 Sum_probs=52.3
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHH
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERIS 122 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~ 122 (542)
.+++++..+..++.++..+++++.....+.+.+...-..+...........+..+.++...+..+...-.+++..-..+.
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777777777777777777777777776666666666666666666666666666555555555554444444
Q ss_pred HH
Q 037552 123 ST 124 (542)
Q Consensus 123 ~~ 124 (542)
.-
T Consensus 128 ~r 129 (428)
T PRK11637 128 AQ 129 (428)
T ss_pred HH
Confidence 33
No 4
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=73.48 E-value=19 Score=36.82 Aligned_cols=80 Identities=24% Similarity=0.241 Sum_probs=41.0
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHH
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERIS 122 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~ 122 (542)
+++++++++++| .++..+..++..+.++......+..+..+++...+...-. +..+.+.+.+..+|..||.+++.++
T Consensus 69 ~le~Le~el~~l-~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~--~~~~~l~~~~~k~~~~l~~l~~~v~ 145 (256)
T PF14932_consen 69 DLEALEEELEAL-QEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLK--KAQKELSAECSKLNNELNQLLGEVS 145 (256)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666 4444444444444445555555555555554433333222 2222355566666666666665555
Q ss_pred HHH
Q 037552 123 STA 125 (542)
Q Consensus 123 ~~v 125 (542)
+.+
T Consensus 146 ~l~ 148 (256)
T PF14932_consen 146 KLA 148 (256)
T ss_pred HHH
Confidence 544
No 5
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.82 E-value=55 Score=35.98 Aligned_cols=171 Identities=21% Similarity=0.155 Sum_probs=93.7
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHhhcccccccCChhhh-ccCchhHHHHHHHHHhhcc-cccccccccCCccccccc
Q 037552 104 DDSLSARNLQMNAVLERISSTAQDLALYHSGEAYSNFHPFL-LGDPSCIKELNQWFAKQFD-TGPCQVVAEEGKSECSRA 181 (542)
Q Consensus 104 ~~~l~a~N~k~N~~L~~L~~~v~eL~~~~s~~Sq~dL~~Yl-~~Ee~~TkaL~~y~kKQFf-~Gi~~lv~~E~s~~~~f~ 181 (542)
...|++.-.++...+.++-++..+.-.+.=.. .|. .....-+..||.-+..+|| +|+.+++ +.-.+|.+.
T Consensus 74 ~~~l~~~~K~~h~s~sk~~K~ldk~~~~di~~------~~~~~v~~~~~~~ln~ai~~h~~rqGm~dv~--~~l~~Ea~~ 145 (394)
T KOG2817|consen 74 DTKLASTHKDLHGSLSKFGKALDKNFNPDISS------VYRNSVDFDTSQVLNEAIVYHFYRQGMDDVG--ECLIKEAGL 145 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCcchhh------HhhcCcChhHHHHHHHHHHHHHHHcCchHHH--HHHHHHhcC
Confidence 33566777777777777777666543322100 111 1111112223444444444 4999999 666666666
Q ss_pred ccccchhhhccccchhhhhhhhHHHHHHHhhhhhhhhcccchhhhhhccccccccchhhhhHHhHHHHHHHHHHHHHHhh
Q 037552 182 SLDDASNILVRDVENSRHQRVSELQWLRLMFGCIFYCRHHTFYHVFFRYTSTFRPLFKNVTKTMLRALFSLVDLASDEAH 261 (542)
Q Consensus 182 ~L~D~~~~~~~~~e~~~~~r~~EL~RLq~~~~~~yicaq~qli~~~~~~~s~~~~i~a~v~~Ak~~~~~s~lq~a~~~l~ 261 (542)
+ .| .-.+.+... ||.|+=.+ =++..+..+++||+.+-
T Consensus 146 ~-~~--------~~~~~~~F~-el~~Iv~~--------------------------------lke~Dl~~aLeWa~~~~- 182 (394)
T KOG2817|consen 146 S-ED--------ESKSRTEFV-ELNQIVEA--------------------------------LKERDLEPALEWAESNR- 182 (394)
T ss_pred C-Cc--------chhhhhhHH-HHHHHHHH--------------------------------HHhccchhHHHHHHHhh-
Confidence 2 11 012334456 77776555 55688899999999864
Q ss_pred hhcchhhhhHHHhhHHHHHHhHHHHHHHhhcccchHHhHHhhchhccccccccchhhhchHHHHHhhHHHHHHHHHHHHh
Q 037552 262 IHLDRHLLKKKHVELVGELSNLYLTEKKLLSETIPALCWELAQLQDTYILQGDYDLKVMRKEFYISRQKVFIAHLINHLA 341 (542)
Q Consensus 262 ~~~~~~sL~~k~~~l~~el~~L~~~i~~il~~~lp~l~~e~AqL~~~pIl~GD~dLkvaRQdyy~srQ~~vi~~Li~Q~A 341 (542)
..|..+.+.++--|..++-- .-+.-| .+.|.+.|.+...+.|
T Consensus 183 -----~~L~~~~s~LE~~Lh~l~fl---------------------~l~~~g------------~~~~~eAl~Yar~~~~ 224 (394)
T KOG2817|consen 183 -----QKLKEKSSSLEFKLHSLHFL---------------------SLIRGG------------KSDQREALRYARTHFA 224 (394)
T ss_pred -----hhhccccccHHHHHHHHHHH---------------------HHHhcC------------CcCcHHHHHHHHHhcC
Confidence 34555556666666655411 111111 2456677777777777
Q ss_pred HHHHHHHHHHHHhhhhhhHhhhHHH
Q 037552 342 RHQFLNIACQLEKKNLFGAYSLLKV 366 (542)
Q Consensus 342 r~elL~La~elE~r~~~~~~~lL~~ 366 (542)
-|.-.. ..|..++-....+|..
T Consensus 225 ~F~~~~---~~eIQklm~sl~~l~~ 246 (394)
T KOG2817|consen 225 PFVADH---LREIQKLMGSLLYLRN 246 (394)
T ss_pred ccccch---HHHHHHHHHHHHHHHc
Confidence 664433 5555566555555543
No 6
>PRK10884 SH3 domain-containing protein; Provisional
Probab=60.90 E-value=66 Score=32.27 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=19.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhh
Q 037552 48 RVSTLAYKAEAVELQKQLRHLQSQFD 73 (542)
Q Consensus 48 r~~~e~Le~E~~~Lqk~~~~~~~r~n 73 (542)
|.-+.++++|+.+|+.+++....+.|
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34688899999999888887665544
No 7
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=59.85 E-value=3.1e+02 Score=34.21 Aligned_cols=172 Identities=23% Similarity=0.258 Sum_probs=95.0
Q ss_pred HhHHHHHHHhhcccchHHhHHh---hchhcccccc------------ccchhhhchHHHHHhhHHHHHHHHHHHHhHHHH
Q 037552 281 SNLYLTEKKLLSETIPALCWEL---AQLQDTYILQ------------GDYDLKVMRKEFYISRQKVFIAHLINHLARHQF 345 (542)
Q Consensus 281 ~~L~~~i~~il~~~lp~l~~e~---AqL~~~pIl~------------GD~dLkvaRQdyy~srQ~~vi~~Li~Q~Ar~el 345 (542)
+.+...-...+.+.+-|++.++ =+..|++.++ -+|+...||| +.+|=-+|.++|--+.-++
T Consensus 956 s~is~~yKnFLne~ViPvLEeCl~aL~~nn~~~L~kaLA~FP~d~qWSaFNs~EA~~---AK~QMDaIKqmIekKv~L~- 1031 (1439)
T PF12252_consen 956 SKISQEYKNFLNEKVIPVLEECLNALRENNMDMLQKALAAFPSDKQWSAFNSEEARQ---AKAQMDAIKQMIEKKVVLQ- 1031 (1439)
T ss_pred ccccHHHHHHHHhccHHHHHHHHHHHHhcCHHHHHHHHHhCCCcccchhcCcHHHHH---HHHHHHHHHHHHHHHHHHH-
Confidence 3444444555666555555542 1233444433 3889999999 7899999999998888777
Q ss_pred HHHHHH--HHhhhhhhHhhhHHHHHHHHHHhccccCCCCCCCCchhHHHHHHHhcCCCCCccccccccChhhHHHHHHHH
Q 037552 346 LNIACQ--LEKKNLFGAYSLLKVIESELQAAAGKQEQGAVDDQDTFLHGVRDLLSSHSNTQAGLSTYVSAPRIVQQISSL 423 (542)
Q Consensus 346 L~La~e--lE~r~~~~~~~lL~~i~~eL~~s~~~~~r~~Id~rD~~~~rL~~lL~~~~~~q~~f~tY~s~~~L~~~~~~L 423 (542)
...-|+ +|.++.-++..-|++| +..+++... ..+|-+++...
T Consensus 1032 ~L~qCqdALeKqnIa~AL~ALn~I---------------------------------PSdKEms~I---s~eLReQIq~~ 1075 (1439)
T PF12252_consen 1032 ALTQCQDALEKQNIAGALQALNNI---------------------------------PSDKEMSKI---SSELREQIQSV 1075 (1439)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcC---------------------------------Cchhhhhhh---hHHHHHHHHHH
Confidence 333343 3444443333322222 122223222 26788999999
Q ss_pred HHHHHHHHHHhhhcch--hhH-H-HHHHHHHHhhCCCCCCCCc----ccCcHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 037552 424 HSDLMTLQSDLKNSLP--QDI-K-CINELLQQLLFPSSTTAQL----ILAPCALMKELDGIEKINAKLSAAVEEATLEHC 495 (542)
Q Consensus 424 ~~dl~~lq~~L~~~~~--e~~-~-~i~eL~~~~Ly~~~tt~Q~----~Lt~~eL~~~l~~l~kln~~l~~~l~dv~~~~~ 495 (542)
+|+|.+||..+..+.- +.+ + .-+.| -.+- |.++ .-++. -++..+|--..+..+..+|+.=|+
T Consensus 1076 KQ~LesLQRAV~TPVvtd~eKvr~rYe~L-----I~~i-TKrIt~LEk~k~~----~l~~ikK~ia~lnnlqqElklLRn 1145 (1439)
T PF12252_consen 1076 KQDLESLQRAVVTPVVTDAEKVRVRYETL-----ITDI-TKRITDLEKAKLD----NLDSIKKAIANLNNLQQELKLLRN 1145 (1439)
T ss_pred HHHHHHHHHhhcccccccHHHHHHHHHHH-----HHHH-HHHHHHHhccccc----cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999977665532 222 1 12222 1110 0100 01111 122445555566666778888888
Q ss_pred hhHHhhh
Q 037552 496 KKSEIIK 502 (542)
Q Consensus 496 ~Kr~~L~ 502 (542)
+|.++=.
T Consensus 1146 EK~Rmh~ 1152 (1439)
T PF12252_consen 1146 EKIRMHS 1152 (1439)
T ss_pred HHHhhcc
Confidence 8887743
No 8
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=55.55 E-value=84 Score=30.67 Aligned_cols=82 Identities=12% Similarity=0.117 Sum_probs=49.8
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHH
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERIS 122 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~ 122 (542)
--+++|.+|-+.|+|+++|+.-+..|..+-..|.-. .|...+..-....++-+...+.+-+-.--++.+++..+.
T Consensus 30 E~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk-----LGit~l~elkqnlskg~~~vq~S~aY~gqKTsaa~s~~g 104 (162)
T PF04201_consen 30 EREELRSELAKVEEEIQTLRQVLAAKERHCAELKRK-----LGITPLSELKQNLSKGWHDVQDSNAYKGQKTSAAFSSVG 104 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HCCchHHHHHHHHHHHhHhhhchhHHHHHHHHHHHHHHH
Confidence 458888999999999999998888887776665421 122222233333344444444333333456666666666
Q ss_pred HHHHHHH
Q 037552 123 STAQDLA 129 (542)
Q Consensus 123 ~~v~eL~ 129 (542)
++|..--
T Consensus 105 ~~i~~Kl 111 (162)
T PF04201_consen 105 SAISRKL 111 (162)
T ss_pred HHHHHHH
Confidence 6665543
No 9
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=53.85 E-value=42 Score=32.74 Aligned_cols=73 Identities=23% Similarity=0.248 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHHHH
Q 037552 52 LAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERISST 124 (542)
Q Consensus 52 e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~~~ 124 (542)
-.+..+++.+++.......+.+.|+...+.+......+....++.++-+..+.+.+.+.|+..|..=+++...
T Consensus 98 ~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 98 VELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555566666666677777777777777777777777788888888888877765555443
No 10
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=53.67 E-value=1e+02 Score=29.48 Aligned_cols=108 Identities=21% Similarity=0.126 Sum_probs=59.7
Q ss_pred cchhhhhhhhHHHHHHHhhhhhhhhcccchhhhhhccccccccchhhhhHHhHHHHHHHHHHHHHHhhhhc-chhhhhHH
Q 037552 194 VENSRHQRVSELQWLRLMFGCIFYCRHHTFYHVFFRYTSTFRPLFKNVTKTMLRALFSLVDLASDEAHIHL-DRHLLKKK 272 (542)
Q Consensus 194 ~e~~~~~r~~EL~RLq~~~~~~yicaq~qli~~~~~~~s~~~~i~a~v~~Ak~~~~~s~lq~a~~~l~~~~-~~~sL~~k 272 (542)
.++.+++.. ||.+|+..++. .=|.+-|. +=+...+..-..+....+.... ....++..
T Consensus 55 ~~kIeERn~-eL~~Lk~~~~~----~v~~L~h~----------------keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~ 113 (177)
T PF13870_consen 55 NEKIEERNK-ELLKLKKKIGK----TVQILTHV----------------KEKLHFLSEELERLKQELKDREEELAKLREE 113 (177)
T ss_pred HHHHHHHHH-HHHHHHHHHHH----HHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666 99999999555 23333333 3333333444444444443322 23455555
Q ss_pred HhhHHHHHHhHHHHHHHhhcccchHHhHHhhchhccccccccchhhhchHHHHHhhHHHHHH
Q 037552 273 HVELVGELSNLYLTEKKLLSETIPALCWELAQLQDTYILQGDYDLKVMRKEFYISRQKVFIA 334 (542)
Q Consensus 273 ~~~l~~el~~L~~~i~~il~~~lp~l~~e~AqL~~~pIl~GD~dLkvaRQdyy~srQ~~vi~ 334 (542)
+..+..+...++..... ++.-..+.++|-|--|||-.+ +++...++.|-+
T Consensus 114 l~~~k~~r~k~~~~~~~---------l~~~~~~~~~P~ll~Dy~~~~---~~~~~l~~~i~~ 163 (177)
T PF13870_consen 114 LYRVKKERDKLRKQNKK---------LRQQGGLLGVPALLRDYDKTK---EEVEELRKEIKE 163 (177)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHhcCCCCCcHHHHHHHHHH---HHHHHHHHHHHH
Confidence 55555555555544444 344455678898888998777 444455555443
No 11
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=52.66 E-value=2.2e+02 Score=29.81 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhhHHHHHHhhhhhh--------hhhhhhhhhhhchhhhhhhHHhhhhHHHHH
Q 037552 63 KQLRHLQSQFDVLTAHGSTLVQGR--------RARVSATSTVNGHLTTLDDSLSARNLQMNA 116 (542)
Q Consensus 63 k~~~~~~~r~nkLq~~as~l~~~~--------~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~ 116 (542)
..++.+.+|++++....+++.+.. ..|.++++..+.++..++..+...|++++.
T Consensus 38 ~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k 99 (258)
T PF15397_consen 38 LKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQK 99 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 356777899999999998885433 345555556666666665555555554443
No 12
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=52.03 E-value=2e+02 Score=27.09 Aligned_cols=90 Identities=16% Similarity=0.253 Sum_probs=65.0
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhh---hhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHH
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGR---RARVSATSTVNGHLTTLDDSLSARNLQMNAVLE 119 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~---~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~ 119 (542)
.++++.......+.||.+|++....+..+.++++..-....+.. -.+....+..++.+..+.+.|.....++.....
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~e 101 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTE 101 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555556888899999999999999999999987766654433 233333446777888888888888887777777
Q ss_pred HHHHHHHHHHhhc
Q 037552 120 RISSTAQDLALYH 132 (542)
Q Consensus 120 ~L~~~v~eL~~~~ 132 (542)
+|..+-.+.-+|=
T Consensus 102 kl~e~d~~ae~~e 114 (143)
T PF12718_consen 102 KLREADVKAEHFE 114 (143)
T ss_pred HHHHHHHHhHHHH
Confidence 7777666655543
No 13
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=46.09 E-value=1.6e+02 Score=32.70 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=57.5
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHH
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQ 113 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k 113 (542)
-+|||+..++.++.|+-..+.+|.-....||+-..-..+..+.+..-.....++++++.+++-.|.-...+
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q 145 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQ 145 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999888887777777666666667777777777666544433
No 14
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=45.55 E-value=4.8e+02 Score=29.21 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=62.1
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHH
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERIS 122 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~ 122 (542)
.++.++.++++++.++..-+++...+..+.+.+..--+++.+.+..........++++. ..|...|..-.+-.
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~-------~~~~~l~~l~~q~r 111 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA-------DLNARLNALEVQER 111 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH-------HHHHHHHHHHHHHH
Confidence 45667777888888888888888877777777777777777666665555555544443 34444444444443
Q ss_pred HHHHHHHhhccccccc----CChhhhccCc-hhHHHHHHHH
Q 037552 123 STAQDLALYHSGEAYS----NFHPFLLGDP-SCIKELNQWF 158 (542)
Q Consensus 123 ~~v~eL~~~~s~~Sq~----dL~~Yl~~Ee-~~TkaL~~y~ 158 (542)
.--..|+.+...--++ |+---++.|+ .--.-+.-|+
T Consensus 112 ~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~ 152 (420)
T COG4942 112 EQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYY 152 (420)
T ss_pred HHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHH
Confidence 4334444433311111 2222344444 4445566666
No 15
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=43.43 E-value=4.8e+02 Score=28.63 Aligned_cols=111 Identities=20% Similarity=0.190 Sum_probs=57.2
Q ss_pred cchhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHH
Q 037552 37 FGTEEVRLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVL-TAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMN 115 (542)
Q Consensus 37 ~~~~e~~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkL-q~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N 115 (542)
|-+++ ++++++..+...-+|++.+++...--..+++.. ......+.....+-..........+......-+ -+.-+.
T Consensus 118 FVd~~-~v~~L~~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~ 195 (412)
T PF04108_consen 118 FVDED-SVEILRENLKISIDELQAIQEQLDNSLLQFDNDLRKLKKQLINKRLKDYELLAPFQSSLGSSPSSSS-SNPLMS 195 (412)
T ss_pred hcCHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccCCCCCccc-ccccHH
Confidence 44455 778888888888899999988888777766543 333333311111111111111111111110000 234455
Q ss_pred HHHHHHHHHHHHHHhhcccc-cccCChhhhccCchhHHHHHHHH
Q 037552 116 AVLERISSTAQDLALYHSGE-AYSNFHPFLLGDPSCIKELNQWF 158 (542)
Q Consensus 116 ~~L~~L~~~v~eL~~~~s~~-Sq~dL~~Yl~~Ee~~TkaL~~y~ 158 (542)
..+..+.+..+++|.+...- .+. .+|.+++..+-
T Consensus 196 ~i~~~l~~le~ema~lL~sLt~Hf---------DqC~~a~~~~e 230 (412)
T PF04108_consen 196 TILKELHSLEQEMASLLESLTNHF---------DQCVTAVRHTE 230 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhc
Confidence 66666666667777776411 222 34777776543
No 16
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.67 E-value=1.2e+02 Score=33.03 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=13.3
Q ss_pred cccCChhhhccCchhHHHHHHHHHhhcc
Q 037552 136 AYSNFHPFLLGDPSCIKELNQWFAKQFD 163 (542)
Q Consensus 136 Sq~dL~~Yl~~Ee~~TkaL~~y~kKQFf 163 (542)
--.+|+.|| +-....-.+|||
T Consensus 329 G~i~l~~yL-------r~VR~lsReQF~ 349 (365)
T KOG2391|consen 329 GVIDLDQYL-------RHVRLLSREQFI 349 (365)
T ss_pred CeeeHHHHH-------HHHHHHHHHHHH
Confidence 447787777 445555567776
No 17
>PRK04863 mukB cell division protein MukB; Provisional
Probab=40.49 E-value=5.5e+02 Score=33.22 Aligned_cols=265 Identities=16% Similarity=0.087 Sum_probs=0.0
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhh------chhhhhhhHHhhhhHH
Q 037552 40 EEVRLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVN------GHLTTLDDSLSARNLQ 113 (542)
Q Consensus 40 ~e~~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~------~~lk~~~~~l~a~N~k 113 (542)
++ .+++++.+++.+++++..|++++...+...+.++..+....+....+..+.+--. ..|......+.+.-..
T Consensus 375 ee-eleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee 453 (1486)
T PRK04863 375 DE-QQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQE 453 (1486)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhcc-------------cc--------------------------------cccCChhhhccCc
Q 037552 114 MNAVLERISSTAQDLALYHS-------------GE--------------------------------AYSNFHPFLLGDP 148 (542)
Q Consensus 114 ~N~~L~~L~~~v~eL~~~~s-------------~~--------------------------------Sq~dL~~Yl~~Ee 148 (542)
+...+..+..-...+-.-.+ |. -..+|+.=+.+..
T Consensus 454 ~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~q~ 533 (1486)
T PRK04863 454 ATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQ 533 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHH--hhcccccccccccCCcccccccccccchhhhccccchhhhh----hhhHHHHHHHhhhhhhhhcccc
Q 037552 149 SCIKELNQWFA--KQFDTGPCQVVAEEGKSECSRASLDDASNILVRDVENSRHQ----RVSELQWLRLMFGCIFYCRHHT 222 (542)
Q Consensus 149 ~~TkaL~~y~k--KQFf~Gi~~lv~~E~s~~~~f~~L~D~~~~~~~~~e~~~~~----r~~EL~RLq~~~~~~yicaq~q 222 (542)
..-.-|..|-+ .+-++-+..+.+.-.--+....+|.+-............++ +. .+.+|...+|.
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~-~i~~l~~~ap~-------- 604 (1486)
T PRK04863 534 RAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQA-RIQRLAARAPA-------- 604 (1486)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhChH--------
Q ss_pred hhhhhhccccccccchhhhhHHhHHHHHHHHHHHHHHhhhhc-----chhhhhHHHhhHHHHHHhHHHHHHHhhcccchH
Q 037552 223 FYHVFFRYTSTFRPLFKNVTKTMLRALFSLVDLASDEAHIHL-----DRHLLKKKHVELVGELSNLYLTEKKLLSETIPA 297 (542)
Q Consensus 223 li~~~~~~~s~~~~i~a~v~~Ak~~~~~s~lq~a~~~l~~~~-----~~~sL~~k~~~l~~el~~L~~~i~~il~~~lp~ 297 (542)
|+.|+-+-.+....+-+..+.+...+.+- ..-++......++..+..|..+++.+....-++
T Consensus 605 -------------W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~~g~ 671 (1486)
T PRK04863 605 -------------WLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGSE 671 (1486)
T ss_pred -------------HHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q ss_pred --HhHHhhchhccccccccch-hhhchHHHHHh
Q 037552 298 --LCWELAQLQDTYILQGDYD-LKVMRKEFYIS 327 (542)
Q Consensus 298 --l~~e~AqL~~~pIl~GD~d-LkvaRQdyy~s 327 (542)
.+...|..++-.+|...|| .++----|+.+
T Consensus 672 ~~~l~~~~~~~~Gvlvsel~~~v~~~~~~~~~A 704 (1486)
T PRK04863 672 DPRLNALAERFGGVLLSEIYDDVSLEDAPYFSA 704 (1486)
T ss_pred cHHHHHHHHhcCCeehhHhhhccCcchHHHHHH
No 18
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=38.12 E-value=2e+02 Score=25.15 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=41.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhh-h--hhhhhhhhhhhhchhhhhhhHHhhhhHHHHHH
Q 037552 49 VSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQ-G--RRARVSATSTVNGHLTTLDDSLSARNLQMNAV 117 (542)
Q Consensus 49 ~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~-~--~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~ 117 (542)
+++..|-.+...++....-+..++|.++..-....- | ...+.+.....+.+++.+...+.....+++..
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888889999999999999998865444432 2 23344444444444544444444444444433
No 19
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=37.01 E-value=1.7e+02 Score=28.15 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=24.3
Q ss_pred hhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHHHHHHHH
Q 037552 88 ARVSATSTVNGHLTTLDDSLSARNLQMNAVLERISSTAQDL 128 (542)
Q Consensus 88 ~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~~~v~eL 128 (542)
........+.+++.+..++|.+-|.+.+..+..+-+....+
T Consensus 142 ~~~~~~~~~~~~l~~~lekL~~fd~~~~~~~~~~~~~~~~l 182 (204)
T PF04740_consen 142 SFIDSLEKAKKKLQETLEKLRAFDQQSSSIFSEIEELLQAL 182 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444455666777777777777777766555544444333
No 20
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.93 E-value=1.6e+02 Score=29.29 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=62.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHHHHHHHH
Q 037552 49 VSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERISSTAQDL 128 (542)
Q Consensus 49 ~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~~~v~eL 128 (542)
..++..|.++..|...+..++..-+.+-.-+-..+......+....+....-. ....+...|.+.+++.+++
T Consensus 2 ~~l~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~--------~d~~i~~~l~kF~~~l~el 73 (200)
T cd07603 2 ASLEQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFR--------DDSLVQNCLNKFIQALQEM 73 (200)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--------CcHHHHHHHHHHHHHHHHH
Confidence 45566666776666666666665555555444444333344333333333211 1235679999999999999
Q ss_pred Hhhcccc-------cccCChhhhccCchhHHHHHH
Q 037552 129 ALYHSGE-------AYSNFHPFLLGDPSCIKELNQ 156 (542)
Q Consensus 129 ~~~~s~~-------Sq~dL~~Yl~~Ee~~TkaL~~ 156 (542)
..|+..- --.||+.|+..+-.-.|+...
T Consensus 74 ~~~~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk 108 (200)
T cd07603 74 NNFHTILLDQAQRTVSTQLQNFVKEDIKKVKESKK 108 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999722 455888888888877776543
No 21
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.52 E-value=1.5e+02 Score=28.06 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=33.0
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHHH
Q 037552 44 LKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERISS 123 (542)
Q Consensus 44 led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~~ 123 (542)
+.++..++..|++|+..|++....+....+.|... .+ +.+|...-..|...+..+..-|..|.+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~---~t-------------~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSE---PT-------------NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34443456666666666666666555544444322 22 444444444555555555555555544
No 22
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=35.02 E-value=3.6e+02 Score=24.99 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=49.5
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHHH
Q 037552 44 LKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERISS 123 (542)
Q Consensus 44 led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~~ 123 (542)
++-+--.+-.++.|++.|+.++..+..+||.+..=-..+. ..+.......+.+..+...+...+.+-++.|+-+-.
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~----~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM----EENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444445777777888887777777777777765555443 233333445566666777777788888887766543
Q ss_pred H
Q 037552 124 T 124 (542)
Q Consensus 124 ~ 124 (542)
-
T Consensus 94 K 94 (120)
T PF12325_consen 94 K 94 (120)
T ss_pred h
Confidence 3
No 23
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.97 E-value=1.8e+02 Score=28.96 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccc-------cccCChhhhccCchhHHHHHH
Q 037552 111 NLQMNAVLERISSTAQDLALYHSGE-------AYSNFHPFLLGDPSCIKELNQ 156 (542)
Q Consensus 111 N~k~N~~L~~L~~~v~eL~~~~s~~-------Sq~dL~~Yl~~Ee~~TkaL~~ 156 (542)
+.-|++.|.+.+++.+++..|+..- .-.||..|+..+-.-.|+...
T Consensus 56 d~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK 108 (200)
T cd07637 56 DEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKEDVRKFKETKK 108 (200)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4458899999999999999999732 445888888888776665543
No 24
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=33.80 E-value=3e+02 Score=29.23 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=19.5
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLV 83 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~ 83 (542)
.++++.+++.+|+.|-.+|.+.+..+...+..+...-..+.
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555544444444433
No 25
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=32.77 E-value=3.1e+02 Score=34.13 Aligned_cols=129 Identities=14% Similarity=0.157 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHh
Q 037552 51 TLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERISSTAQDLAL 130 (542)
Q Consensus 51 ~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~~~v~eL~~ 130 (542)
+..+..++..++++...+..+++++...-..+......+.+..+....++......+...+...+...+.+.+.=+++..
T Consensus 392 ~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 471 (1163)
T COG1196 392 LAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAE 471 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555444444444444444444444444444444444444433333333333
Q ss_pred hcccc------------cccCChhhhccCchhHHHHHHHHHhhcccccccccccCCccccccc
Q 037552 131 YHSGE------------AYSNFHPFLLGDPSCIKELNQWFAKQFDTGPCQVVAEEGKSECSRA 181 (542)
Q Consensus 131 ~~s~~------------Sq~dL~~Yl~~Ee~~TkaL~~y~kKQFf~Gi~~lv~~E~s~~~~f~ 181 (542)
..... -...+...... ...+++...+.+.. ++|+.-.|+.-.+....|.
T Consensus 472 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~-~~Gv~G~v~~li~v~~~y~ 532 (1163)
T COG1196 472 LQEELQRLEKELSSLEARLDRLEAEQRA-SQGVRAVLEALESG-LPGVYGPVAELIKVKEKYE 532 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHhcc-CCCccchHHHhcCcChHHH
Confidence 32211 00001111111 33345555555555 7777666665555555554
No 26
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=32.20 E-value=2.2e+02 Score=30.40 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=25.5
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAH 78 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~ 78 (542)
++.+.++++.+.+..|..|++....+.....+++.+
T Consensus 75 ~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 75 NIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777788888877777777776666544
No 27
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=31.57 E-value=1.2e+03 Score=29.76 Aligned_cols=80 Identities=20% Similarity=0.181 Sum_probs=56.2
Q ss_pred hHHHhHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHHHH
Q 037552 46 AIRVSTLAYKAEAVELQ-KQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERISST 124 (542)
Q Consensus 46 d~r~~~e~Le~E~~~Lq-k~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~~~ 124 (542)
.++..++.++.+.++|+ +++++.++..+-.+-+++...-.++.+.+........|+.+ ...|..++..+.++.++
T Consensus 469 eL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~----q~~~~~~~~~~~kv~~~ 544 (1317)
T KOG0612|consen 469 ELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA----QKKNDNAADSLEKVNSL 544 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHH
Confidence 33344677777777787 58888888888888777777666666665555555555544 67788888888888888
Q ss_pred HHHHH
Q 037552 125 AQDLA 129 (542)
Q Consensus 125 v~eL~ 129 (542)
-++|-
T Consensus 545 rk~le 549 (1317)
T KOG0612|consen 545 RKQLE 549 (1317)
T ss_pred HHHHH
Confidence 77774
No 28
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=30.69 E-value=2.2e+02 Score=32.08 Aligned_cols=48 Identities=10% Similarity=0.203 Sum_probs=27.3
Q ss_pred hhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHhhcccc
Q 037552 88 ARVSATSTVNGHLTTLDDSLSARNLQMNAVLERISSTAQDLALYHSGE 135 (542)
Q Consensus 88 ~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~~~v~eL~~~~s~~ 135 (542)
.+.+....-.+++++..+..+..+-.+....+.|-.-+++||-|+.++
T Consensus 407 ~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~q 454 (493)
T KOG0804|consen 407 KLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQ 454 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhh
Confidence 333333344455555555666666666666666666666666666544
No 29
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=30.28 E-value=4.8e+02 Score=26.13 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=32.0
Q ss_pred hhhhhhhchhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHh
Q 037552 91 SATSTVNGHLTTLDDSLSARNLQMNAVLERISSTAQDLAL 130 (542)
Q Consensus 91 ~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~~~v~eL~~ 130 (542)
+.+.++...+...-.++.+.|-+++..|..+...+..|-.
T Consensus 145 ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~ 184 (206)
T PF14988_consen 145 ALELAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEA 184 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567777777788999999999999999998888743
No 30
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=29.91 E-value=4.9e+02 Score=25.88 Aligned_cols=85 Identities=9% Similarity=0.106 Sum_probs=59.2
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHH---HHHHHH
Q 037552 44 LKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQM---NAVLER 120 (542)
Q Consensus 44 led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~---N~~L~~ 120 (542)
+.|+...++.+..|...|+..-.....-.+++..--+-+++....-+...-.....|+.+.+...+..-++ +..|.+
T Consensus 21 l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k 100 (194)
T PF15619_consen 21 LAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLK 100 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667777777777776666666667888888888888888888877788888888777766655544 455666
Q ss_pred HHHHHHHH
Q 037552 121 ISSTAQDL 128 (542)
Q Consensus 121 L~~~v~eL 128 (542)
+.+..+.|
T Consensus 101 ~~~~l~~L 108 (194)
T PF15619_consen 101 TKDELKHL 108 (194)
T ss_pred HHHHHHHH
Confidence 66655543
No 31
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.69 E-value=2e+02 Score=30.28 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 037552 52 LAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERISSTAQDLALY 131 (542)
Q Consensus 52 e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~~~v~eL~~~ 131 (542)
..=+.++..+++.+.-.+...+.|......+.........+-...+..|+..+..+...+-.++.-=..|.+-++ ++|
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR--Amq 111 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR--AMQ 111 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 333444444444444444555555555555555555555555555555555555555555554444444444444 566
Q ss_pred cccc
Q 037552 132 HSGE 135 (542)
Q Consensus 132 ~s~~ 135 (542)
-+|.
T Consensus 112 ~nG~ 115 (265)
T COG3883 112 VNGT 115 (265)
T ss_pred HcCC
Confidence 6666
No 32
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.95 E-value=1.9e+02 Score=32.31 Aligned_cols=77 Identities=18% Similarity=0.292 Sum_probs=49.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-hhhhhh---hhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHHHH
Q 037552 49 VSTLAYKAEAVELQKQLRHLQSQFDVLTAHGS-TLVQGR---RARVSATSTVNGHLTTLDDSLSARNLQMNAVLERISST 124 (542)
Q Consensus 49 ~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as-~l~~~~---~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~~~ 124 (542)
+.+.+|..+-..++....-++++||.++..-. ....+. ..+.++-+..+.+++.+...+.....++|.+|-.+-+.
T Consensus 29 ~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi 108 (429)
T COG0172 29 DKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNI 108 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCC
Confidence 46788888888899999999999998876654 233322 33444445556666666666666666665555544433
Q ss_pred H
Q 037552 125 A 125 (542)
Q Consensus 125 v 125 (542)
.
T Consensus 109 ~ 109 (429)
T COG0172 109 P 109 (429)
T ss_pred C
Confidence 3
No 33
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=26.71 E-value=4.4e+02 Score=26.16 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhh-hhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHH
Q 037552 50 STLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGR-RARVSATSTVNGHLTTLDDSLSARNLQMNAVLE 119 (542)
Q Consensus 50 ~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~-~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~ 119 (542)
.+..|+-|-..|..........||-|........+.. ....-+.--..++|..+.+.+..+.++++.+|.
T Consensus 101 ~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 101 ELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333333322 122222223445666666666666666666654
No 34
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.42 E-value=2.7e+02 Score=27.95 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcccc-------cccCChhhhccCchhHHH
Q 037552 109 ARNLQMNAVLERISSTAQDLALYHSGE-------AYSNFHPFLLGDPSCIKE 153 (542)
Q Consensus 109 a~N~k~N~~L~~L~~~v~eL~~~~s~~-------Sq~dL~~Yl~~Ee~~Tka 153 (542)
..+--+...|++.+++.+++..|+..- -..+|..|..-+-.-.++
T Consensus 54 ~~De~i~~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~~L~~F~k~dl~~vke 105 (200)
T cd07638 54 SKDAVIETSLTKFSDTLQEMINYHTILFDQAQRSIKAQLQTFVKEDLRKFKD 105 (200)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344478899999999999999999722 233555555555444333
No 35
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.43 E-value=4.4e+02 Score=27.75 Aligned_cols=69 Identities=10% Similarity=0.181 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHH
Q 037552 50 STLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVL 118 (542)
Q Consensus 50 ~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L 118 (542)
.+-.+..+.+.+|+++..+..+-+.++.....+.-.-....+..+..+++++.+.+.+..+|..+..-+
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ra 107 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRA 107 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666667777776677777777666666666666667777777777777666666665544433
No 36
>PHA03386 P10 fibrous body protein; Provisional
Probab=24.67 E-value=1.6e+02 Score=26.32 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=31.2
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 037552 45 KAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTL 82 (542)
Q Consensus 45 ed~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l 82 (542)
--||.++.++-..|-+||-+++-.....++|-+++..+
T Consensus 8 l~Ir~dIkavd~KVdaLQ~qV~dv~~n~~~LDa~~~qL 45 (94)
T PHA03386 8 TQILDAVQEVDTKVDALQTQLNGLEEDSQPLDGLPAQL 45 (94)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 44778889999999999999998887777777777666
No 37
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.26 E-value=4.5e+02 Score=27.83 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 037552 114 MNAVLERISSTAQDLALYH 132 (542)
Q Consensus 114 ~N~~L~~L~~~v~eL~~~~ 132 (542)
+...+..|.+.+.-|=..+
T Consensus 274 t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 274 TRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554433
No 38
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=24.17 E-value=1.5e+02 Score=27.73 Aligned_cols=37 Identities=35% Similarity=0.415 Sum_probs=0.0
Q ss_pred chhhhhhhhHHHh--------HHHHHHHHHHHHHHHHHHHHHhhhH
Q 037552 38 GTEEVRLKAIRVS--------TLAYKAEAVELQKQLRHLQSQFDVL 75 (542)
Q Consensus 38 ~~~e~~led~r~~--------~e~Le~E~~~Lqk~~~~~~~r~nkL 75 (542)
.+|| +++-||+= +|+||+||++|..++.-+.-=.|-|
T Consensus 80 pseE-Pik~~r~WLkenLhvflEkLE~EvreLEQlV~DLE~WLDal 124 (135)
T PF15466_consen 80 PSEE-PIKAIRNWLKENLHVFLEKLEKEVRELEQLVRDLEEWLDAL 124 (135)
T ss_pred Cccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 39
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=23.95 E-value=53 Score=25.78 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.9
Q ss_pred hHHHhhHHHHHHhhhhhc
Q 037552 523 ERLRSQVPELTARVRGFK 540 (542)
Q Consensus 523 e~Lk~~VeeLe~rv~a~q 540 (542)
+-|+.+|+.|+.||+.+|
T Consensus 2 ~aLrqQv~aL~~qv~~Lq 19 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQ 19 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 458999999999999986
No 40
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=23.72 E-value=2.7e+02 Score=30.77 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=25.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 037552 49 VSTLAYKAEAVELQKQLRHLQSQFDVLTAHGST 81 (542)
Q Consensus 49 ~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~ 81 (542)
+++.+|..+...++.+.+.+..++|+++..-..
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888766544
No 41
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=23.70 E-value=4.9e+02 Score=22.75 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhh---hhHHhhhhHHHHHHHHHHHHHHHHHHh
Q 037552 58 AVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTL---DDSLSARNLQMNAVLERISSTAQDLAL 130 (542)
Q Consensus 58 ~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~---~~~l~a~N~k~N~~L~~L~~~v~eL~~ 130 (542)
+..+.+........-+++..-.+.+-++..++.++.+.+.+++..+ -+.+...|.+.|..+.+=.+.+.+|..
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333333333333444444455556666666666666666655443 345566666666666666666666643
No 42
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=23.68 E-value=5.7e+02 Score=26.37 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=50.1
Q ss_pred CccchHHHHhhcc-cccCCCCCCCCccchhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhh
Q 037552 12 EGEDLESAHDSIS-AFSSSRGNQDDIFGTEEVRLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARV 90 (542)
Q Consensus 12 eg~aLdeal~t~~-~~~~~~~~~~~~~~~~e~~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~ 90 (542)
+-+.|..+|.+++ +++++++ .| +..+..+.+=+..|...+.-+..-...+...+.++....-.+.
T Consensus 11 dP~kLn~tL~ala~Al~GrG~-----------~l---g~~l~~l~~~l~~ln~~~~~l~~~l~~l~~v~~~~a~aapdL~ 76 (267)
T PF11887_consen 11 DPAKLNATLSALATALDGRGE-----------QL---GETLDDLNTLLATLNPRLPQLREDLRNLADVADTYADAAPDLL 76 (267)
T ss_pred CHHHHHHHHHHHHHHHcCcch-----------hH---HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4455666777776 5554443 22 2234444444444444444444444444444444444444443
Q ss_pred hhhhhhhchhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 037552 91 SATSTVNGHLTTLDDSLSARNLQMNAVLERISSTAQDLALYHS 133 (542)
Q Consensus 91 ~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~~~v~eL~~~~s 133 (542)
.....+. ..-..|.....++.+.|..++..+..+..++.
T Consensus 77 ~~l~~~~----~~s~tL~~~~~~L~~lL~~~~~~a~~~~~~l~ 115 (267)
T PF11887_consen 77 DALDNLT----TTSRTLVDQRQQLDALLLSATGLADTGTDFLA 115 (267)
T ss_pred HHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 22234455555555566666655555555554
No 43
>PLN02678 seryl-tRNA synthetase
Probab=23.58 E-value=3.2e+02 Score=30.60 Aligned_cols=98 Identities=15% Similarity=0.108 Sum_probs=55.1
Q ss_pred ccchHHHHhhcccccCCCCCCCCccchhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhh
Q 037552 13 GEDLESAHDSISAFSSSRGNQDDIFGTEEVRLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSA 92 (542)
Q Consensus 13 g~aLdeal~t~~~~~~~~~~~~~~~~~~e~~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~ 92 (542)
|+..|.+-.+|..=... . + .+ +++.+|..+-..++.++..+..++|.++..-..+.-.. ..
T Consensus 12 ~~~~~~v~~~l~~R~~~-~-----------~--~i-d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~----~~ 72 (448)
T PLN02678 12 GGDPELIRESQRRRFAS-V-----------E--LV-DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAK----ED 72 (448)
T ss_pred ccCHHHHHHHHHhhCCC-H-----------H--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----Cc
Confidence 56778887777622100 0 1 12 46788888888888888888888888877654421110 11
Q ss_pred hhhhhchhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 037552 93 TSTVNGHLTTLDDSLSARNLQMNAVLERISSTAQDLALYHS 133 (542)
Q Consensus 93 ~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~~~v~eL~~~~s 133 (542)
.++...+.+ .|......+...+..+.+...+++.-.+
T Consensus 73 ~~~l~~~~~----~Lk~ei~~le~~~~~~~~~l~~~~~~iP 109 (448)
T PLN02678 73 ATELIAETK----ELKKEITEKEAEVQEAKAALDAKLKTIG 109 (448)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 112222222 3344445555556666666666555554
No 44
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=23.53 E-value=1.6e+02 Score=24.15 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=27.5
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQFDV 74 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nk 74 (542)
|++|+..-+..|++|+..++..+..+...++-
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~K~a~r~A 53 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAKKSASRAA 53 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888778999999999999999888877763
No 45
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.27 E-value=5.6e+02 Score=27.21 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=25.7
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhh
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQG 85 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~ 85 (542)
.++.+..+.+.+.+|+..|++....+..+...|+.....+...
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666666666666666666555433
No 46
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=23.20 E-value=3.1e+02 Score=29.40 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=40.7
Q ss_pred hhhhhchhhhhhhHHhhhhHHHHHHHHHHHHH---HHHHHhhcccccccCChhhhc
Q 037552 93 TSTVNGHLTTLDDSLSARNLQMNAVLERISST---AQDLALYHSGEAYSNFHPFLL 145 (542)
Q Consensus 93 ~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~~~---v~eL~~~~s~~Sq~dL~~Yl~ 145 (542)
.+.++..+..-...++.+=-.++++|++|..+ |+++-.|-|.+--+|.++||.
T Consensus 59 Le~v~~rYqR~y~ema~~L~~LeavLqRir~G~~LVekM~~YASDQEVLdMh~Flr 114 (324)
T PF12126_consen 59 LEAVEARYQRDYEEMAGQLGRLEAVLQRIRTGGALVEKMKLYASDQEVLDMHGFLR 114 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 35566677777777777778899999999765 778888888776777777765
No 47
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=22.34 E-value=3.1e+02 Score=30.19 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 037552 49 VSTLAYKAEAVELQKQLRHLQSQFDVLTAHGS 80 (542)
Q Consensus 49 ~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as 80 (542)
+++.++-.+...++.+.+.+..+||+++..-.
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~ 61 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIG 61 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777765443
No 48
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=21.68 E-value=1.3e+03 Score=26.84 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=23.0
Q ss_pred chhhhhHHHhhHHHHHHhHHHHHHHhhcccchHHhHH
Q 037552 265 DRHLLKKKHVELVGELSNLYLTEKKLLSETIPALCWE 301 (542)
Q Consensus 265 ~~~sL~~k~~~l~~el~~L~~~i~~il~~~lp~l~~e 301 (542)
....+..+.......|+..+++...=+...|-.-+++
T Consensus 350 ~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~ 386 (557)
T COG0497 350 EVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELKA 386 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666677777777777776555555444444
No 49
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=21.56 E-value=4.4e+02 Score=28.55 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=36.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHh---hhHHH-HHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHHH
Q 037552 48 RVSTLAYKAEAVELQKQLRHLQSQF---DVLTA-HGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERISS 123 (542)
Q Consensus 48 r~~~e~Le~E~~~Lqk~~~~~~~r~---nkLq~-~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~~ 123 (542)
.++.+.|++|.++||.--..-.+.. .++|. -+++++|.+.++.+- ...|+.+... .+.+-++.++++.+
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L----~~sLk~~~~~---~~~e~~~~i~~L~~ 75 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKEL----KKSLKRCKKS---LSAEERELIEKLEE 75 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhccC---CChhHHHHHHHHHH
Confidence 3566777888887765444333333 33333 234455555444222 2222222211 23355566666666
Q ss_pred HHHHH
Q 037552 124 TAQDL 128 (542)
Q Consensus 124 ~v~eL 128 (542)
.+.+-
T Consensus 76 ~Ik~r 80 (330)
T PF07851_consen 76 DIKER 80 (330)
T ss_pred HHHHH
Confidence 66555
No 50
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.25 E-value=4.2e+02 Score=26.85 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHh
Q 037552 51 TLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERISSTAQDLAL 130 (542)
Q Consensus 51 ~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~~~v~eL~~ 130 (542)
++..|.++.+|.+....++..-+.+-.-+..++-..+.......+-.++ .=.+....--+.+.|.+.+.+.+++..
T Consensus 4 l~~~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~----~f~~~~dDe~~~~~l~kFs~~l~El~~ 79 (215)
T cd07601 4 LNVFEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQ----KFELGRDDEILVSTLKQFSKVVDELST 79 (215)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4445566666655555555544444333333332222222222222111 000023334445699999999999999
Q ss_pred hcccc-------cccCChhhhccCchhHHHHHHHHHhhccc
Q 037552 131 YHSGE-------AYSNFHPFLLGDPSCIKELNQWFAKQFDT 164 (542)
Q Consensus 131 ~~s~~-------Sq~dL~~Yl~~Ee~~TkaL~~y~kKQFf~ 164 (542)
||..- --.+|+.|+..+-.-.+.. +|.|+.
T Consensus 80 ~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~----kK~FdK 116 (215)
T cd07601 80 MHSTLSSQLADTVLHPISQFMESDLAEIMTL----KELFKA 116 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHH
Confidence 99822 3347777877777655543 455543
No 51
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=21.07 E-value=7.4e+02 Score=26.37 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=23.6
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLV 83 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~ 83 (542)
.++..+..+..+++.+..|+++....+...+.|+..+....
T Consensus 236 ~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 276 (344)
T PF12777_consen 236 QLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETE 276 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666666655554443
No 52
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.42 E-value=3.6e+02 Score=30.16 Aligned_cols=70 Identities=19% Similarity=0.150 Sum_probs=40.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHH
Q 037552 49 VSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERIS 122 (542)
Q Consensus 49 ~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~ 122 (542)
+.+.....|+..+.+.......++.+|+.+-..+-.....+.....+....+++ +++.+..+|.-|..|-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~----~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKK----LRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHhhHHHHHHHHHHHH
Confidence 457777888888888888888888888776555544433333333333332222 2444444555554443
No 53
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.41 E-value=5.3e+02 Score=28.92 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=31.1
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGST 81 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~ 81 (542)
.+..+++.+.++++++..++..+.....+..-|...+..
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 110 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREG 110 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566777788888888888888888888888888777643
Done!