Query 037552
Match_columns 542
No_of_seqs 63 out of 65
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 23:17:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mq9_A Bone marrow stromal ant 64.0 22 0.00074 37.0 9.0 73 55-128 396-469 (471)
2 2l5g_A GPS2 protein, G protein 56.1 18 0.00062 26.1 4.5 29 43-71 9-37 (38)
3 2yy0_A C-MYC-binding protein; 48.5 21 0.00072 27.3 4.2 27 50-76 20-46 (53)
4 3caz_A BAR protein; thermo-aci 41.1 1.5E+02 0.0051 28.7 9.8 99 51-152 107-224 (294)
5 3uul_A Utrophin; spectrin repe 41.1 1.4E+02 0.0049 24.2 11.0 36 49-84 36-71 (118)
6 3uun_A Dystrophin; triple heli 36.1 1.7E+02 0.0058 23.6 10.6 36 49-84 36-71 (119)
7 3na7_A HP0958; flagellar bioge 31.1 1.3E+02 0.0044 29.2 7.9 58 268-325 147-214 (256)
8 1ez3_A Syntaxin-1A; three heli 26.3 2.9E+02 0.0099 23.2 8.7 24 43-66 13-36 (127)
9 2p22_A Suppressor protein STP2 25.0 3.1E+02 0.011 25.7 8.9 22 136-164 141-162 (174)
10 2yy0_A C-MYC-binding protein; 24.2 1E+02 0.0034 23.5 4.5 32 43-74 20-51 (53)
11 1wle_A Seryl-tRNA synthetase; 22.3 2.5E+02 0.0084 30.3 8.8 32 49-80 70-101 (501)
12 1g6u_A Domain swapped dimer; d 21.3 1.3E+02 0.0045 22.0 4.3 21 50-70 21-41 (48)
13 3hnw_A Uncharacterized protein 20.3 1.4E+02 0.0049 26.7 5.5 46 244-289 55-100 (138)
14 3hnw_A Uncharacterized protein 20.3 2.8E+02 0.0095 24.8 7.4 55 49-103 75-129 (138)
No 1
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.97 E-value=22 Score=37.02 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhh-hhhchhhhhhhHHhhhhHHHHHHHHHHHHHHHHH
Q 037552 55 KAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATS-TVNGHLTTLDDSLSARNLQMNAVLERISSTAQDL 128 (542)
Q Consensus 55 e~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~-~~~~~lk~~~~~l~a~N~k~N~~L~~L~~~v~eL 128 (542)
+.-...||+++...+.-+-.+..+|++-.|-.-.|.+-.+ ++....|+++ .+.+..++.|..|+.+...|.++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVE-ELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345567888888888888888899998887766554333 3344455554 67888999999999999998876
No 2
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=56.07 E-value=18 Score=26.07 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=25.2
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQ 71 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r 71 (542)
+++++|+.+.+|+.+++.|+..+..+-+|
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88999999999999999999998765443
No 3
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=48.50 E-value=21 Score=27.33 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 037552 50 STLAYKAEAVELQKQLRHLQSQFDVLT 76 (542)
Q Consensus 50 ~~e~Le~E~~~Lqk~~~~~~~r~nkLq 76 (542)
++++|+.|..+|+.....+..+...|.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666655555555444
No 4
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=41.13 E-value=1.5e+02 Score=28.66 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---hhhHHHHH------HhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHH
Q 037552 51 TLAYKAEAVELQKQLRHLQSQ---FDVLTAHG------STLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERI 121 (542)
Q Consensus 51 ~e~Le~E~~~Lqk~~~~~~~r---~nkLq~~a------s~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L 121 (542)
+.++.+++.+|+++..--..- +|-+.+-- +.++.+.++-..+.+.+.-.+++ .++..--+||+++++-
T Consensus 107 iqkyfQ~IEtlK~ql~nf~e~RLiYDHYKlKvdELEK~~KdSeKI~RNQsKLssAEtaYkq---vcsDiInkMnkll~n~ 183 (294)
T 3caz_A 107 IQKYRQEIEEIKKEYKETDKYRERYDHYKVKLDNLEKKNKDQERIERNQQKFKDAEAAYSS---VCADLIQKMETVWKKH 183 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHhccchHHHHHHhHHHhhhHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 566777777777766533221 22111111 23344444444555555544444 4566677888888877
Q ss_pred HHHHHHHHhhc-ccc---------cccCChhhhccCchhHH
Q 037552 122 SSTAQDLALYH-SGE---------AYSNFHPFLLGDPSCIK 152 (542)
Q Consensus 122 ~~~v~eL~~~~-s~~---------Sq~dL~~Yl~~Ee~~Tk 152 (542)
-....+.++.- +.+ +-.+.-|||.+|++--.
T Consensus 184 ~riineaasavwstqlqyakaleaaanpivpylqqeeqeee 224 (294)
T 3caz_A 184 VSIFAEAASAVWSTQLQYAKALEAAANPIVPYLQQEEQEEE 224 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGGCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhhhH
Confidence 66666664432 222 66789999999987544
No 5
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=41.07 E-value=1.4e+02 Score=24.16 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=28.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Q 037552 49 VSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQ 84 (542)
Q Consensus 49 ~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~ 84 (542)
..++.+-.+...+++.+.....+.+.+...|..+..
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~ 71 (118)
T 3uul_A 36 EDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMT 71 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888888888888999888888864
No 6
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=36.07 E-value=1.7e+02 Score=23.59 Aligned_cols=36 Identities=14% Similarity=0.020 Sum_probs=28.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Q 037552 49 VSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQ 84 (542)
Q Consensus 49 ~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~ 84 (542)
..++.+-.+..++++.+.....+.+.+...|..+..
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~ 71 (119)
T 3uun_A 36 EVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIG 71 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 356777777888888888888888888888888754
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.10 E-value=1.3e+02 Score=29.15 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=33.9
Q ss_pred hhhHHHhhHHHHHHhHHHHHHHhhcccchHHhHH------hhchhc-cccccc---cchhhhchHHHH
Q 037552 268 LLKKKHVELVGELSNLYLTEKKLLSETIPALCWE------LAQLQD-TYILQG---DYDLKVMRKEFY 325 (542)
Q Consensus 268 sL~~k~~~l~~el~~L~~~i~~il~~~lp~l~~e------~AqL~~-~pIl~G---D~dLkvaRQdyy 325 (542)
.++..+..+..++..+..+...+....-|+++.. ++...+ .||-.| -|.+.+-.|.|-
T Consensus 147 ~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~~~~g~avv~v~~~~C~GC~~~lppq~~~ 214 (256)
T 3na7_A 147 LVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRWAKNTSIVTIKKQACGGCFIRLNDKIYT 214 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHGGGSEEECBTTBCTTTCCBCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCceEEEeeCCccCCCCeeeCHHHHH
Confidence 5566667777777777777777666555555543 222121 333333 577887777664
No 8
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=26.31 E-value=2.9e+02 Score=23.20 Aligned_cols=24 Identities=13% Similarity=0.129 Sum_probs=16.8
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHH
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLR 66 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~ 66 (542)
.+++|+.++..++..+..|++.-.
T Consensus 13 ~v~~I~~~i~~i~~~v~~l~~~~~ 36 (127)
T 1ez3_A 13 QVEEIRGFIDKIAENVEEVKRKHS 36 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777765544
No 9
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=24.97 E-value=3.1e+02 Score=25.72 Aligned_cols=22 Identities=14% Similarity=0.082 Sum_probs=15.3
Q ss_pred cccCChhhhccCchhHHHHHHHHHhhccc
Q 037552 136 AYSNFHPFLLGDPSCIKELNQWFAKQFDT 164 (542)
Q Consensus 136 Sq~dL~~Yl~~Ee~~TkaL~~y~kKQFf~ 164 (542)
-..+|+.|+.. ......+|||.
T Consensus 141 g~I~ld~ylK~-------vR~LaReQF~~ 162 (174)
T 2p22_A 141 GTIPLDTFVKQ-------GRELARQQFLV 162 (174)
T ss_dssp TSSCHHHHHHH-------HHHHHHHHHHH
T ss_pred CCCCHHHHHHH-------HHHHHHHHHHH
Confidence 46899888854 55555688874
No 10
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.22 E-value=1e+02 Score=23.52 Aligned_cols=32 Identities=9% Similarity=0.242 Sum_probs=27.8
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQFDV 74 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nk 74 (542)
..|.++.+...|+.++.+|+++..-+..+.++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77888899999999999999999888887764
No 11
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=22.32 E-value=2.5e+02 Score=30.32 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=24.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 037552 49 VSTLAYKAEAVELQKQLRHLQSQFDVLTAHGS 80 (542)
Q Consensus 49 ~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as 80 (542)
+.+.+|.++-.+++.....+..+||.++..-.
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~ 101 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVR 101 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888888888888776543
No 12
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.28 E-value=1.3e+02 Score=22.03 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 037552 50 STLAYKAEAVELQKQLRHLQS 70 (542)
Q Consensus 50 ~~e~Le~E~~~Lqk~~~~~~~ 70 (542)
++-+||.|+|+|.|.+.-+..
T Consensus 21 elaaleselqalekklaalks 41 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKS 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999887765543
No 13
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.33 E-value=1.4e+02 Score=26.75 Aligned_cols=46 Identities=15% Similarity=0.010 Sum_probs=34.8
Q ss_pred HhHHHHHHHHHHHHHHhhhhcchhhhhHHHhhHHHHHHhHHHHHHH
Q 037552 244 TMLRALFSLVDLASDEAHIHLDRHLLKKKHVELVGELSNLYLTEKK 289 (542)
Q Consensus 244 Ak~~~~~s~lq~a~~~l~~~~~~~sL~~k~~~l~~el~~L~~~i~~ 289 (542)
....++.+||+.|.+-+..-.....|...+..+.+|+..|.+++..
T Consensus 55 ~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~ 100 (138)
T 3hnw_A 55 AELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIA 100 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457899999999987655555677788888888888887776665
No 14
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.27 E-value=2.8e+02 Score=24.83 Aligned_cols=55 Identities=7% Similarity=0.062 Sum_probs=29.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhh
Q 037552 49 VSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTL 103 (542)
Q Consensus 49 ~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~ 103 (542)
...+.|+.++.++.+....+.+..-.++.......+....+.....+..+++.++
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666655555555555554444444444444444444
Done!