Query 037552
Match_columns 542
No_of_seqs 63 out of 65
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 23:17:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037552.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037552hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 53.2 22 0.0016 28.1 7.8 31 49-79 28-58 (110)
2 d1bg1a1 a.47.1.1 (A:136-321) S 24.0 1.4E+02 0.01 25.9 8.7 107 43-167 12-118 (186)
3 d1grja1 a.2.1.1 (A:2-79) GreA 14.4 2.1E+02 0.015 21.5 6.5 51 49-104 8-58 (78)
4 d1ez3a_ a.47.2.1 (A:) Syntaxin 14.3 2.6E+02 0.019 21.6 8.5 23 43-65 11-33 (124)
5 d1bf5a1 a.47.1.1 (A:136-316) S 13.4 3.5E+02 0.025 23.1 8.7 105 43-167 10-114 (181)
6 d2elba1 a.238.1.1 (A:6-273) DC 13.1 3.3E+02 0.024 23.2 8.8 42 111-152 74-122 (268)
7 d2f23a1 a.2.1.1 (A:3-77) GreA 12.3 2.3E+02 0.017 21.0 6.2 60 49-118 8-67 (75)
8 d1fxkc_ a.2.5.1 (C:) Prefoldin 11.1 3.3E+02 0.024 21.1 9.8 42 43-84 2-43 (133)
9 d3bb6a1 b.82.2.13 (A:1-109) Un 10.8 21 0.0016 29.2 -0.5 15 512-526 92-106 (109)
10 d1fxka_ a.2.5.1 (A:) Prefoldin 9.3 2.2E+02 0.016 21.9 5.3 36 43-78 66-101 (107)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=53.17 E-value=22 Score=28.12 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=25.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 037552 49 VSTLAYKAEAVELQKQLRHLQSQFDVLTAHG 79 (542)
Q Consensus 49 ~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~a 79 (542)
+.+.+|..+...++.+...+..++|.++-.-
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i 58 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRV 58 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999887544
No 2
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.02 E-value=1.4e+02 Score=25.93 Aligned_cols=107 Identities=12% Similarity=0.181 Sum_probs=66.1
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHH
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERIS 122 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~ 122 (542)
.++++|..+...+.++..|+-.-.--..++..++..+..-... ....+..+++...+...+++.+-+=..+++++.
T Consensus 12 ~v~~l~~~~q~~e~~ik~Le~~Qe~f~f~yk~lq~~~~~~~~~----~~~~~~~~q~~~~l~~~~~~L~~~R~~l~~k~~ 87 (186)
T d1bg1a1 12 HLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLN----GNNQSVTRQKMQQLEQMLTALDQMRRSIVSELA 87 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-------------CCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888877776677776565443211100 111223344455555566666666667778877
Q ss_pred HHHHHHHhhcccccccCChhhhccCchhHHHHHHHHHhhcccccc
Q 037552 123 STAQDLALYHSGEAYSNFHPFLLGDPSCIKELNQWFAKQFDTGPC 167 (542)
Q Consensus 123 ~~v~eL~~~~s~~Sq~dL~~Yl~~Ee~~TkaL~~y~kKQFf~Gi~ 167 (542)
+++..+....+. + -..+|..|=.+|=..||.
T Consensus 88 ~~l~~l~~lq~~---------l-----l~~eL~~WKrrQQlA~iG 118 (186)
T d1bg1a1 88 GLLSAMEYVQKT---------L-----TDEELADWKRRQQIACIG 118 (186)
T ss_dssp HHHHHHHHHHHH---------H-----HHTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH---------H-----HHHHHHHHHHHHHHHhCC
Confidence 777777554321 0 116889999999888885
No 3
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.41 E-value=2.1e+02 Score=21.45 Aligned_cols=51 Identities=10% Similarity=0.024 Sum_probs=38.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhh
Q 037552 49 VSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLD 104 (542)
Q Consensus 49 ~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~ 104 (542)
.+..+|++|+..|...+. -......+....||.++-|+.=..+........
T Consensus 8 eg~~~L~~EL~~L~~~~r-----pei~~~I~~Ar~~GDlsENaeY~aAKe~q~~~e 58 (78)
T d1grja1 8 RGAEKLREELDFLKSVRR-----PEIIAAIAEAREHGDLKENAEYHAAREQQGFCE 58 (78)
T ss_dssp HHHHHHHHHHHHHHHTHH-----HHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccH-----HHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHH
Confidence 467888888888776433 345567888999999999998888877655543
No 4
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=14.32 E-value=2.6e+02 Score=21.60 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=15.6
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHH
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQL 65 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~ 65 (542)
.+++||.++..++..+..++.+-
T Consensus 11 eV~~Ir~~I~~i~~~v~~i~~~~ 33 (124)
T d1ez3a_ 11 QVEEIRGFIDKIAENVEEVKRKH 33 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777776553
No 5
>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.43 E-value=3.5e+02 Score=23.07 Aligned_cols=105 Identities=13% Similarity=0.118 Sum_probs=54.9
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHHHHHH
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVLERIS 122 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L~~L~ 122 (542)
.+.++|..+..++.++..|+-.-.-.-.++..++...... +. ...+..+.........+...+.+=-.+++++.
T Consensus 10 ~v~~l~~~vq~~e~~ik~Led~Qd~fdf~yktlq~~~~~~--~~----~~~~~~~q~~~~l~~~~~~L~~~R~e~~~k~~ 83 (181)
T d1bf5a1 10 KVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHET--NG----VAKSDQKQEQLLLKKMYLMLDNKRKEVVHKII 83 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc--cC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888888888877666666676665442211 10 01112222222233333344444445555555
Q ss_pred HHHHHHHhhcccccccCChhhhccCchhHHHHHHHHHhhcccccc
Q 037552 123 STAQDLALYHSGEAYSNFHPFLLGDPSCIKELNQWFAKQFDTGPC 167 (542)
Q Consensus 123 ~~v~eL~~~~s~~Sq~dL~~Yl~~Ee~~TkaL~~y~kKQFf~Gi~ 167 (542)
+++..+....+ .+ -..+|..|=.+|=.-||.
T Consensus 84 ~~l~~~~~lq~---------~l-----l~~eL~eWKr~QQ~a~iG 114 (181)
T d1bf5a1 84 ELLNVTELTQN---------AL-----INDELVEWKRRQQSACIG 114 (181)
T ss_dssp HHHHHHHHHHH---------HH-----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH---------HH-----HHHHHHHHHHHHHHHhcC
Confidence 55543321111 01 236788999888888875
No 6
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.06 E-value=3.3e+02 Score=23.22 Aligned_cols=42 Identities=19% Similarity=0.156 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccc-------cccCChhhhccCchhHH
Q 037552 111 NLQMNAVLERISSTAQDLALYHSGE-------AYSNFHPFLLGDPSCIK 152 (542)
Q Consensus 111 N~k~N~~L~~L~~~v~eL~~~~s~~-------Sq~dL~~Yl~~Ee~~Tk 152 (542)
+-.+...|.+++++.+++..++..- --.+|..|+..+-.-.+
T Consensus 74 d~~~~~~l~~f~~~~~el~~~~~~l~~~~~~~~~~pL~~f~~~di~~~k 122 (268)
T d2elba1 74 DEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEIL 122 (268)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3446678888888888888887622 22356666655544333
No 7
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=12.28 E-value=2.3e+02 Score=20.97 Aligned_cols=60 Identities=7% Similarity=-0.021 Sum_probs=42.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhhhhhhhhhhchhhhhhhHHhhhhHHHHHHH
Q 037552 49 VSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQGRRARVSATSTVNGHLTTLDDSLSARNLQMNAVL 118 (542)
Q Consensus 49 ~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~~~~~l~~~~~~~~~~lk~~~~~l~a~N~k~N~~L 118 (542)
.+..+|++|+..|. ..|-.....++....||.++-++.=..+....... .++...+...|
T Consensus 8 eg~~kL~~EL~~l~------~~r~ei~~~I~eAr~~GDl~ENaeY~aAke~q~~~----e~rI~eLe~~L 67 (75)
T d2f23a1 8 AGYERLMQQLERER------ERLQEATKILQELMESSDDYDDSGLEAAKQEKARI----EARIDSLEDIL 67 (75)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhCccccchHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 36788888886542 33556777889999999999999888887755554 44444444444
No 8
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=11.10 E-value=3.3e+02 Score=21.06 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=28.1
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAHGSTLVQ 84 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~as~l~~ 84 (542)
+|+++...++.|++++..|+.+...+....+.++..-.++..
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~ 43 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555567777777777777777777777766665555543
No 9
>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}
Probab=10.83 E-value=21 Score=29.19 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=10.9
Q ss_pred hhhhhhhcCChhHHH
Q 037552 512 RRVFVDFVCSPERLR 526 (542)
Q Consensus 512 R~LyV~Ff~dpe~Lk 526 (542)
-+-||.|||.||.|-
T Consensus 92 ~~f~v~Fy~~pe~l~ 106 (109)
T d3bb6a1 92 TYFNIDFFVAPEVLM 106 (109)
T ss_dssp CEEEEEEEECHHHHE
T ss_pred EEEEEEEEECCcccc
Confidence 356788888888763
No 10
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=9.32 E-value=2.2e+02 Score=21.86 Aligned_cols=36 Identities=3% Similarity=0.106 Sum_probs=28.6
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 037552 43 RLKAIRVSTLAYKAEAVELQKQLRHLQSQFDVLTAH 78 (542)
Q Consensus 43 ~led~r~~~e~Le~E~~~Lqk~~~~~~~r~nkLq~~ 78 (542)
.+.++.+.++.++.++..|.++...+..+++.++.-
T Consensus 66 ~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~ 101 (107)
T d1fxka_ 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555668899999999999999888888887654
Done!