Your job contains 1 sequence.
>037553
MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA
SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSS
MLHKALEGAIILETFPKTTVDVFALVLESGG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 037553
(151 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2124024 - symbol:RRP41L "AT4G27490" species:37... 563 1.6e-54 1
ZFIN|ZDB-GENE-050522-362 - symbol:exosc6 "exosome compone... 211 3.2e-17 1
POMBASE|SPBC211.08c - symbol:SPBC211.08c "exosomal 3'-5' ... 176 1.6e-13 1
TAIR|locus:2076710 - symbol:RRP41 "AT3G61620" species:370... 171 5.6e-13 1
FB|FBgn0032487 - symbol:Ski6 "Ski6" species:7227 "Drosoph... 170 7.1e-13 1
WB|WBGene00007201 - symbol:exos-4.1 species:6239 "Caenorh... 164 3.1e-12 1
UNIPROTKB|Q17533 - symbol:exos-4.1 "Putative exosome comp... 164 3.1e-12 1
ZFIN|ZDB-GENE-040426-1702 - symbol:exosc4 "exosome compon... 156 2.2e-11 1
MGI|MGI:1919794 - symbol:Exosc6 "exosome component 6" spe... 158 2.3e-11 1
FB|FBgn0036916 - symbol:Mtr3 "Mtr3" species:7227 "Drosoph... 160 2.7e-11 1
UNIPROTKB|F1RSL0 - symbol:EXOSC4 "Uncharacterized protein... 154 3.8e-11 1
UNIPROTKB|E2RIM3 - symbol:EXOSC4 "Uncharacterized protein... 153 5.0e-11 1
UNIPROTKB|Q28F19 - symbol:exosc6 "Exosome complex compone... 154 6.5e-11 1
UNIPROTKB|Q7YRA3 - symbol:EXOSC4 "Exosome complex compone... 151 8.8e-11 1
UNIPROTKB|Q9NPD3 - symbol:EXOSC4 "Exosome complex compone... 151 8.8e-11 1
UNIPROTKB|Q5RKV6 - symbol:EXOSC6 "Exosome complex compone... 152 1.1e-10 1
RGD|1309832 - symbol:Exosc6 "exosome component 6" species... 150 1.9e-10 1
UNIPROTKB|F1S435 - symbol:EXOSC6 "Uncharacterized protein... 148 2.4e-10 1
MGI|MGI:1923576 - symbol:Exosc4 "exosome component 4" spe... 147 2.6e-10 1
RGD|1310986 - symbol:Exosc4 "exosome component 4" species... 147 2.6e-10 1
SGD|S000003427 - symbol:SKI6 "Exosome non-catalytic core ... 132 1.5e-08 1
CGD|CAL0002905 - symbol:orf19.4582 species:5476 "Candida ... 130 2.3e-08 1
GENEDB_PFALCIPARUM|PFB0415c - symbol:PFB0415c "hypothetic... 126 1.0e-07 1
UNIPROTKB|O96177 - symbol:PFB0415c "3' exoribonuclease, p... 126 1.0e-07 1
ASPGD|ASPL0000041827 - symbol:AN2153 species:162425 "Emer... 88 2.0e-07 2
POMBASE|SPAC3G9.10c - symbol:rrp41 "exosomal 3'-to-5' pho... 114 1.6e-06 1
CGD|CAL0003194 - symbol:orf19.168 species:5476 "Candida a... 88 8.0e-06 2
UNIPROTKB|Q84T68 - symbol:RRP46 "Exosome complex exonucle... 104 2.0e-05 1
TAIR|locus:2075351 - symbol:AT3G46210 "AT3G46210" species... 103 2.7e-05 1
ASPGD|ASPL0000013004 - symbol:AN3812 species:162425 "Emer... 103 3.4e-05 1
UNIPROTKB|G4MSP2 - symbol:MGG_07084 "3' exoribonuclease" ... 103 4.4e-05 1
>TAIR|locus:2124024 [details] [associations]
symbol:RRP41L "AT4G27490" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0034968 "histone lysine methylation" evidence=RCA] [GO:0048449
"floral organ formation" evidence=RCA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IMP] [GO:0009845 "seed germination" evidence=IMP]
[GO:0090351 "seedling development" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009845 GO:GO:0008408
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 KO:K12587
OMA:GRLLCDF EMBL:BT029998 EMBL:BT030054 IPI:IPI00544536
RefSeq:NP_194479.2 UniGene:At.46035 ProteinModelPortal:A2RVK7
SMR:A2RVK7 IntAct:A2RVK7 STRING:A2RVK7 PaxDb:A2RVK7 PRIDE:A2RVK7
EnsemblPlants:AT4G27490.1 GeneID:828858 KEGG:ath:AT4G27490
TAIR:At4g27490 InParanoid:A2RVK7 PhylomeDB:A2RVK7
ProtClustDB:CLSN2680990 Genevestigator:A2RVK7 Uniprot:A2RVK7
Length = 256
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 104/129 (80%), Positives = 118/129 (91%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
++R PIF SD+DW RPD RGFHQCRPA +TGAV+SASGSAYAEFGNTKVIVSVFGPRE
Sbjct: 19 RSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRE 78
Query: 83 SKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDV 142
SKKAM+YS++GRLNCNVSYT FA+P GQG+DHK++SSMLHKALEG I++ETFPKTTVDV
Sbjct: 79 SKKAMVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSSMLHKALEGVIMMETFPKTTVDV 138
Query: 143 FALVLESGG 151
FALVLESGG
Sbjct: 139 FALVLESGG 147
>ZFIN|ZDB-GENE-050522-362 [details] [associations]
symbol:exosc6 "exosome component 6" species:7955
"Danio rerio" [GO:0000178 "exosome (RNase complex)"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001247 Pfam:PF01138
ZFIN:ZDB-GENE-050522-362 GO:GO:0005737 GO:GO:0005730 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
HSSP:Q9UXC2 eggNOG:COG0689 GeneTree:ENSGT00550000074804
HOGENOM:HOG000229515 EMBL:BC065602 EMBL:BC095173 IPI:IPI00483784
RefSeq:NP_001018322.1 UniGene:Dr.80144 ProteinModelPortal:Q6P0I8
STRING:Q6P0I8 Ensembl:ENSDART00000052348 GeneID:326786
KEGG:dre:326786 CTD:118460 HOVERGEN:HBG057826 InParanoid:Q6P0I8
KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K NextBio:20809731
Bgee:Q6P0I8 Uniprot:Q6P0I8
Length = 271
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 52/140 (37%), Positives = 74/140 (52%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSR----GFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIV 75
P P +F D P SR G RP F R G V+ A GSAY E GNTK+I
Sbjct: 11 PEESQSPLLFLSPDKAPKAPSSRQGVRGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIIC 70
Query: 76 SVFGPRESKKAMMYS-NIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAII 131
SV+GP+E+++ GRL C+ F+ RG QGS+ +D S+ L ++L +
Sbjct: 71 SVYGPKETERRDETDMKTGRLVCDFRLAPFSCVKRGAWIQGSEERDLSATLMESLRPGVC 130
Query: 132 LETFPKTTVDVFALVLESGG 151
L +P++ +DV +VLE+ G
Sbjct: 131 LHRYPRSQIDVNVMVLENDG 150
>POMBASE|SPBC211.08c [details] [associations]
symbol:SPBC211.08c "exosomal 3'-5' exoribonuclease,
PH-like (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISM]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISO]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISO]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0034661
"ncRNA catabolic process" evidence=ISO] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 Pfam:PF01138
PomBase:SPBC211.08c GO:GO:0005829 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0071035 GO:GO:0071038
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 HSSP:Q9UXC2 eggNOG:COG0689
HOGENOM:HOG000229515 PROSITE:PS01277 KO:K12587 PIR:T50343
RefSeq:NP_596618.1 ProteinModelPortal:Q9P7R3 STRING:Q9P7R3
EnsemblFungi:SPBC211.08c.1 GeneID:2540412 KEGG:spo:SPBC211.08c
OMA:ADANIDC OrthoDB:EOG415KPS NextBio:20801539 Uniprot:Q9P7R3
Length = 257
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 41/129 (31%), Positives = 68/129 (52%)
Query: 26 PPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK 85
PP F + + +R +CR + + G A GS+Y E K+ +V GPR SK
Sbjct: 15 PPYFEEPEQP-VFTRTRDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGPRPSK- 72
Query: 86 AMMYSNIGRLNCNVSYTTFATPIR-G--QGSDHKDFSSMLHKALEGAIILETFPKTTVDV 142
+ + +LNC + F+T +R G Q + K +S M+ A+ +I+L +PK+++DV
Sbjct: 73 TFAFRSSAKLNCEFRLSPFSTSVRQGHVQTVEEKSYSQMIEAAISPSILLHLYPKSSIDV 132
Query: 143 FALVLESGG 151
+ V+ES G
Sbjct: 133 YIQVIESDG 141
>TAIR|locus:2076710 [details] [associations]
symbol:RRP41 "AT3G61620" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0004527 EMBL:AL132959
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
HOGENOM:HOG000229515 OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666
HSSP:P50597 EMBL:AF191741 EMBL:BT005485 EMBL:AK118846
IPI:IPI00547870 PIR:T47954 RefSeq:NP_001118878.1 RefSeq:NP_191721.1
UniGene:At.20638 ProteinModelPortal:Q9SP08 SMR:Q9SP08 IntAct:Q9SP08
STRING:Q9SP08 PaxDb:Q9SP08 PRIDE:Q9SP08 DNASU:825335
EnsemblPlants:AT3G61620.1 EnsemblPlants:AT3G61620.2 GeneID:825335
KEGG:ath:AT3G61620 TAIR:At3g61620 InParanoid:Q9SP08
PhylomeDB:Q9SP08 ProtClustDB:CLSN2685258 ArrayExpress:Q9SP08
Genevestigator:Q9SP08 Uniprot:Q9SP08
Length = 241
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 42/120 (35%), Positives = 64/120 (53%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGR 94
LR D R F++ R G V+ A GSA E GNTKVI +V+GPRE +K ++
Sbjct: 9 LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68
Query: 95 LNCNVSYTTFAT-PIRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ C S F+T R Q D + + S ++ + +E I+ E P + +D+F VL++ G
Sbjct: 69 VLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADG 128
>FB|FBgn0032487 [details] [associations]
symbol:Ski6 "Ski6" species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005652 "nuclear lamina"
evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0010468 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0005652 GO:GO:0000176 eggNOG:COG0689
SUPFAM:SSF55666 EMBL:AY071632 ProteinModelPortal:Q8SYC8 SMR:Q8SYC8
IntAct:Q8SYC8 STRING:Q8SYC8 PaxDb:Q8SYC8 PRIDE:Q8SYC8
FlyBase:FBgn0032487 InParanoid:Q8SYC8 OrthoDB:EOG4Z08NJ
ArrayExpress:Q8SYC8 Bgee:Q8SYC8 Uniprot:Q8SYC8
Length = 246
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 44/119 (36%), Positives = 61/119 (51%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K S I N
Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVI---N 69
Query: 97 CNVSYTTFATPIRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R D K +F L +AL AI E +P++ +D++ VL+ G
Sbjct: 70 CQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQDDG 128
>WB|WBGene00007201 [details] [associations]
symbol:exos-4.1 species:6239 "Caenorhabditis elegans"
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0008406
GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
Uniprot:Q17533
Length = 240
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 42/118 (35%), Positives = 60/118 (50%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q R R G +A GS Y E GNTKV+ +V+GP E K + + + C
Sbjct: 10 RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVC 69
Query: 98 NVSYTTFATPIRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S T F+ R + D K + S +L KA E I+ E FP++ +D+F V++ G
Sbjct: 70 QYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDG 127
>UNIPROTKB|Q17533 [details] [associations]
symbol:exos-4.1 "Putative exosome complex component RRP41"
species:6239 "Caenorhabditis elegans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0002119 GO:GO:0010171
GO:GO:0040018 GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515 OMA:DVFIEVL
Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
Uniprot:Q17533
Length = 240
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 42/118 (35%), Positives = 60/118 (50%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q R R G +A GS Y E GNTKV+ +V+GP E K + + + C
Sbjct: 10 RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVC 69
Query: 98 NVSYTTFATPIRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S T F+ R + D K + S +L KA E I+ E FP++ +D+F V++ G
Sbjct: 70 QYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDG 127
>ZFIN|ZDB-GENE-040426-1702 [details] [associations]
symbol:exosc4 "exosome component 4" species:7955
"Danio rerio" [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-040426-1702 GO:GO:0004527 InterPro:IPR020568
SUPFAM:SSF54211 KO:K11600 CTD:54512 HOGENOM:HOG000229515
HOVERGEN:HBG051519 Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC059525
EMBL:BC153617 EMBL:AY576990 IPI:IPI00485513 RefSeq:NP_957033.1
UniGene:Dr.107456 SMR:Q6PBZ8 DNASU:393712 GeneID:393712
KEGG:dre:393712 InParanoid:Q6PBZ8 NextBio:20814714 Uniprot:Q6PBZ8
Length = 245
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 39/120 (32%), Positives = 59/120 (49%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR--L 95
R D R + R R A GSAY E GNTK + V+GP E + + S R +
Sbjct: 13 RLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDRAII 72
Query: 96 NCNVSYTTFATPIRGQG--SDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E A++ E +P++ +D++ +L++ G
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQIDIYVKILQADG 132
>MGI|MGI:1919794 [details] [associations]
symbol:Exosc6 "exosome component 6" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0045006 "DNA deamination" evidence=ISO]
[GO:0045190 "isotype switching" evidence=IMP] [GO:0045830 "positive
regulation of isotype switching" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 MGI:MGI:1919794 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 GO:GO:0045190
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 HSSP:Q9UXC2
eggNOG:COG0689 HOGENOM:HOG000229515 SUPFAM:SSF55666 CTD:118460
HOVERGEN:HBG057826 KO:K12587 OrthoDB:EOG4D7Z6K EMBL:AK012102
EMBL:AK088532 EMBL:BC116985 EMBL:BC119082 IPI:IPI00466593
RefSeq:NP_082550.1 UniGene:Mm.24174 UniGene:Mm.334810
ProteinModelPortal:Q8BTW3 SMR:Q8BTW3 IntAct:Q8BTW3 STRING:Q8BTW3
PhosphoSite:Q8BTW3 PaxDb:Q8BTW3 PRIDE:Q8BTW3 GeneID:72544
KEGG:mmu:72544 UCSC:uc009nlp.1 InParanoid:Q8BTW3 NextBio:336459
CleanEx:MM_EXOSC6 Genevestigator:Q8BTW3 Uniprot:Q8BTW3
Length = 273
Score = 158 (60.7 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 46/148 (31%), Positives = 72/148 (48%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFG 79
P P +++ D + P +R + RP + R G ++ A GSAY E G TKV+ +V G
Sbjct: 11 PEESQPPQLYAAEDDE--TPAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSG 68
Query: 80 PRESKKAMMYSNI------------GRLNCNVSYTTFATPIR----GQGSDHKDFSSMLH 123
PR+++ S GRL C+ F+ R G G + ++ L
Sbjct: 69 PRQAEGGERGSGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGGGGEDRELGLALQ 128
Query: 124 KALEGAIILETFPKTTVDVFALVLESGG 151
+ALE A+ L +P+ ++V AL+LE GG
Sbjct: 129 EALEPAVRLGRYPRAQLEVSALLLEDGG 156
>FB|FBgn0036916 [details] [associations]
symbol:Mtr3 "Mtr3" species:7227 "Drosophila melanogaster"
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010468 "regulation of
gene expression" evidence=IMP] InterPro:IPR001247 Pfam:PF01138
GO:GO:0005737 EMBL:AE014296 GO:GO:0016787 GO:GO:0010468
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176
GeneTree:ENSGT00550000074804 KO:K12587 FlyBase:FBgn0036916
UniGene:Dm.13639 EMBL:BT030767 RefSeq:NP_649157.1 UniGene:Dm.27179
SMR:Q9VW53 IntAct:Q9VW53 MINT:MINT-905327 STRING:Q9VW53
EnsemblMetazoa:FBtr0074918 GeneID:40173 KEGG:dme:Dmel_CG8025
UCSC:CG8025-RA CTD:40173 InParanoid:Q9VW53 OMA:STAINCC
GenomeRNAi:40173 NextBio:817403 Uniprot:Q9VW53
Length = 326
Score = 160 (61.4 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 38/106 (35%), Positives = 56/106 (52%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P+E +A N+G LNC V++ F+T
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFST 107
Query: 107 -PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + SSML KA+E + F +D+ L+L+ G
Sbjct: 108 GDLDSVPERERHLSSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDG 153
>UNIPROTKB|F1RSL0 [details] [associations]
symbol:EXOSC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0045006 "DNA
deamination" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0030307 "positive regulation of cell
growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
"maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 EMBL:FP085471 RefSeq:XP_003125499.1
UniGene:Ssc.8432 Ensembl:ENSSSCT00000006505 GeneID:100511875
KEGG:ssc:100511875 Uniprot:F1RSL0
Length = 245
Score = 154 (59.3 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 39/120 (32%), Positives = 60/120 (50%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L +A E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQIDIYVQVLQADG 132
>UNIPROTKB|E2RIM3 [details] [associations]
symbol:EXOSC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045006
"DNA deamination" evidence=IEA] [GO:0035327 "transcriptionally
active chromatin" evidence=IEA] [GO:0030307 "positive regulation of
cell growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
"maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
CTD:54512 GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 EMBL:AAEX03008955 RefSeq:XP_539207.1
Ensembl:ENSCAFT00000002371 GeneID:482086 KEGG:cfa:482086
NextBio:20856762 Uniprot:E2RIM3
Length = 245
Score = 153 (58.9 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 40/120 (33%), Positives = 59/120 (49%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQG--SDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>UNIPROTKB|Q28F19 [details] [associations]
symbol:exosc6 "Exosome complex component MTR3" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000178 "exosome (RNase
complex)" evidence=ISS] InterPro:IPR001247 Pfam:PF01138
GO:GO:0005737 GO:GO:0005730 GO:GO:0003723 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG057826 KO:K12587 OrthoDB:EOG4D7Z6K EMBL:CR762221
EMBL:BC136080 RefSeq:NP_001017016.1 UniGene:Str.4704
ProteinModelPortal:Q28F19 SMR:Q28F19 STRING:Q28F19
Ensembl:ENSXETT00000016677 GeneID:549770 KEGG:xtr:549770 CTD:5916
Xenbase:XB-GENE-998313 OMA:LANCHSS Bgee:Q28F19 Uniprot:Q28F19
Length = 270
Score = 154 (59.3 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 43/118 (36%), Positives = 62/118 (52%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGN--TKVIVSVFGPRESKKAMMYSNI-GRLNCN 98
RG + RP F R G ++ A GSAY E G+ TKV+ +V GPRE + GRL C+
Sbjct: 35 RGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLCD 94
Query: 99 VSYTTFAT--PIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + F+ P G G + L ++LE A+ L+ +P+ V V+ LVLE G
Sbjct: 95 LRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEVIVWVLVLEDRG 152
>UNIPROTKB|Q7YRA3 [details] [associations]
symbol:EXOSC4 "Exosome complex component RRP41"
species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
evidence=ISS] [GO:0071044 "histone mRNA catabolic process"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045006 "DNA deamination" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0000460 "maturation of
5.8S rRNA" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0051607
GO:GO:0017091 GO:GO:0004527 GO:GO:0090305 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
KO:K11600 GO:GO:0000460 GO:GO:0045006 EMBL:AJ518955 EMBL:BC109819
IPI:IPI00697313 RefSeq:NP_001071554.1 UniGene:Bt.16597 HSSP:Q9UXC2
ProteinModelPortal:Q7YRA3 SMR:Q7YRA3 STRING:Q7YRA3
Ensembl:ENSBTAT00000019451 GeneID:618292 KEGG:bta:618292 CTD:54512
eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG051519 InParanoid:Q7YRA3 OMA:DVFIEVL OrthoDB:EOG4PC9T0
NextBio:20901104 GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666
Uniprot:Q7YRA3
Length = 245
Score = 151 (58.2 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 39/120 (32%), Positives = 59/120 (49%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>UNIPROTKB|Q9NPD3 [details] [associations]
symbol:EXOSC4 "Exosome complex component RRP41"
species:9606 "Homo sapiens" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=NAS] [GO:0005730 "nucleolus" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0006364 "rRNA
processing" evidence=NAS] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IMP] [GO:0045006
"DNA deamination" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0035327 "transcriptionally active
chromatin" evidence=IMP] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0051607
"defense response to virus" evidence=IMP] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0030307 GO:GO:0005730
GO:GO:0051607 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460
GO:GO:0000175 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6 GO:GO:0045006
CTD:54512 eggNOG:COG0689 HOGENOM:HOG000229515 HOVERGEN:HBG051519
OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 EMBL:AF281133 EMBL:AK000598 EMBL:AC109322
EMBL:BC002777 IPI:IPI00745613 RefSeq:NP_061910.1 UniGene:Hs.632041
ProteinModelPortal:Q9NPD3 SMR:Q9NPD3 IntAct:Q9NPD3 STRING:Q9NPD3
PhosphoSite:Q9NPD3 DMDM:14285756 SWISS-2DPAGE:Q9NPD3 PaxDb:Q9NPD3
PRIDE:Q9NPD3 DNASU:54512 Ensembl:ENST00000316052
Ensembl:ENST00000568113 GeneID:54512 KEGG:hsa:54512 UCSC:uc003zau.3
GeneCards:GC08P145133 HGNC:HGNC:18189 HPA:HPA024792 MIM:606491
neXtProt:NX_Q9NPD3 PharmGKB:PA134867931 InParanoid:Q9NPD3
PhylomeDB:Q9NPD3 EvolutionaryTrace:Q9NPD3 GenomeRNAi:54512
NextBio:56896 ArrayExpress:Q9NPD3 Bgee:Q9NPD3 CleanEx:HS_EXOSC4
Genevestigator:Q9NPD3 GermOnline:ENSG00000178896 Uniprot:Q9NPD3
Length = 245
Score = 151 (58.2 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 39/120 (32%), Positives = 59/120 (49%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>UNIPROTKB|Q5RKV6 [details] [associations]
symbol:EXOSC6 "Exosome complex component MTR3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000178 "exosome (RNase complex)" evidence=IDA]
[GO:0045190 "isotype switching" evidence=ISS] [GO:0045006 "DNA
deamination" evidence=IDA] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0010467 GO:GO:0005730
GO:GO:0003723 GO:GO:0000178 GO:GO:0045190 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
GO:GO:0045006 HOGENOM:HOG000229515 SUPFAM:SSF55666 CTD:118460
HOVERGEN:HBG057826 KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K
EMBL:AC009060 EMBL:BC052252 IPI:IPI00073602 RefSeq:NP_478126.1
UniGene:Hs.660633 UniGene:Hs.740491 ProteinModelPortal:Q5RKV6
SMR:Q5RKV6 IntAct:Q5RKV6 STRING:Q5RKV6 PhosphoSite:Q5RKV6
DMDM:74736141 PaxDb:Q5RKV6 PeptideAtlas:Q5RKV6 PRIDE:Q5RKV6
Ensembl:ENST00000435634 GeneID:118460 KEGG:hsa:118460
UCSC:uc002eym.1 GeneCards:GC16M070284 HGNC:HGNC:19055 MIM:606490
neXtProt:NX_Q5RKV6 PharmGKB:PA134932096 eggNOG:NOG303282
InParanoid:Q5RKV6 PhylomeDB:Q5RKV6 ChiTaRS:EXOSC6
EvolutionaryTrace:Q5RKV6 GenomeRNAi:118460 NextBio:80292
Bgee:Q5RKV6 CleanEx:HS_EXOSC6 Genevestigator:Q5RKV6 Uniprot:Q5RKV6
Length = 272
Score = 152 (58.6 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 45/144 (31%), Positives = 72/144 (50%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP +D + P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAADEEEA-PGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALE 127
++ GRL C+ FA R G + ++ + L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGG 151
A+ L +P+ ++V AL+LE GG
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGG 155
>RGD|1309832 [details] [associations]
symbol:Exosc6 "exosome component 6" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0045006 "DNA deamination" evidence=IEA;ISO] [GO:0045190
"isotype switching" evidence=ISO] [GO:0045830 "positive regulation
of isotype switching" evidence=ISO] [GO:0004532 "exoribonuclease
activity" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 RGD:1309832 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0045006 GeneTree:ENSGT00550000074804
SUPFAM:SSF55666 CTD:118460 KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K
IPI:IPI00359650 RefSeq:XP_003751927.1 RefSeq:XP_003753157.1
PRIDE:D3ZW38 Ensembl:ENSRNOT00000025179 GeneID:307850
KEGG:rno:307850 UCSC:RGD:1309832 Uniprot:D3ZW38
Length = 272
Score = 150 (57.9 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 46/144 (31%), Positives = 73/144 (50%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP ++ D P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAAEEDET-PAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPIRG--QGS-DHKDFSSMLHKALE 127
++ GRL C+ F+ R QGS + ++ L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGSSEDRELGLALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGG 151
A+ L +P+ ++V AL+LE GG
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGG 155
>UNIPROTKB|F1S435 [details] [associations]
symbol:EXOSC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045006 "DNA deamination" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
Pfam:PF01138 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0045006 GeneTree:ENSGT00550000074804 OMA:GRLLCDF
EMBL:CU929739 Ensembl:ENSSSCT00000003013 Uniprot:F1S435
Length = 254
Score = 148 (57.2 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 45/148 (30%), Positives = 72/148 (48%)
Query: 20 PTRKTRPPIFS-GSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVF 78
P P +++ G D + P +R + RP + R G ++ A GSAY E G TKV+ +V
Sbjct: 11 PEESQPPQLYAVGEDEE---PAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVS 67
Query: 79 GPRESKKAMMYSNI------------GRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLH 123
GPR+++ GRL C+ F+ R G + ++ + L
Sbjct: 68 GPRQAEGGERGGGPAGTGGEAPAALRGRLLCDFRRAPFSGRRRRAPPGGGEERELALALQ 127
Query: 124 KALEGAIILETFPKTTVDVFALVLESGG 151
+ALE A+ L +P+ ++V AL+LE GG
Sbjct: 128 EALEPAVRLGRYPRAQLEVSALLLEDGG 155
>MGI|MGI:1923576 [details] [associations]
symbol:Exosc4 "exosome component 4" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0000460 "maturation of 5.8S rRNA" evidence=ISO] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0035327 "transcriptionally active chromatin" evidence=ISO]
[GO:0045006 "DNA deamination" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:0071028 "nuclear mRNA
surveillance" evidence=ISO] [GO:0071044 "histone mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
MGI:MGI:1923576 Pfam:PF01138 GO:GO:0005737 GO:GO:0030307
GO:GO:0005730 GO:GO:0051607 GO:GO:0017091 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG051519 OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC012277 IPI:IPI00310857
RefSeq:NP_780608.1 UniGene:Mm.322752 ProteinModelPortal:Q921I9
SMR:Q921I9 STRING:Q921I9 PhosphoSite:Q921I9 PaxDb:Q921I9
PRIDE:Q921I9 Ensembl:ENSMUST00000059045 GeneID:109075
KEGG:mmu:109075 InParanoid:Q921I9 ChiTaRS:EXOSC4 NextBio:361620
Bgee:Q921I9 CleanEx:MM_EXOSC4 Genevestigator:Q921I9
GermOnline:ENSMUSG00000034259 Uniprot:Q921I9
Length = 245
Score = 147 (56.8 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 38/120 (31%), Positives = 59/120 (49%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>RGD|1310986 [details] [associations]
symbol:Exosc4 "exosome component 4" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA;ISO] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=IEA;ISO] [GO:0030307 "positive regulation of cell growth"
evidence=IEA;ISO] [GO:0035327 "transcriptionally active chromatin"
evidence=IEA;ISO] [GO:0045006 "DNA deamination" evidence=IEA;ISO]
[GO:0051607 "defense response to virus" evidence=IEA;ISO]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA;ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=IEA;ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1310986
GO:GO:0005634 GO:GO:0030307 GO:GO:0051607 GO:GO:0017091
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327
GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512
GeneTree:ENSGT00550000074804 OrthoDB:EOG4PC9T0 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 IPI:IPI00366418 RefSeq:NP_001128332.1
UniGene:Rn.28481 PRIDE:D4A4Y0 Ensembl:ENSRNOT00000016464
GeneID:300045 KEGG:rno:300045 UCSC:RGD:1310986 NextBio:646189
Uniprot:D4A4Y0
Length = 245
Score = 147 (56.8 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 38/120 (31%), Positives = 59/120 (49%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>SGD|S000003427 [details] [associations]
symbol:SKI6 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=IC] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IMP]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IDA] [GO:0016075 "rRNA catabolic process"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034427 "nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'" evidence=IMP] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
evidence=IGI;IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IC]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IDA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0070651 "nonfunctional rRNA decay" evidence=IC]
InterPro:IPR001247 SGD:S000003427 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0071039
GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211 RefSeq:NP_011711.3
GeneID:853109 KEGG:sce:YGR195W KO:K11600 GO:GO:0000176
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 GO:GO:0071051 KO:K03233 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515 OMA:DVFIEVL
GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666 EMBL:X82775 EMBL:Z72981
GO:GO:0034475 GO:GO:0034476 GO:GO:0034473 OrthoDB:EOG45MRFG
EMBL:Z72980 EMBL:AY558509 PIR:S59180 RefSeq:NP_011717.4 PDB:2WP8
PDBsum:2WP8 ProteinModelPortal:P46948 SMR:P46948 DIP:DIP-2083N
IntAct:P46948 MINT:MINT-555587 STRING:P46948 PaxDb:P46948
EnsemblFungi:YGR195W GeneID:853115 KEGG:sce:YGR201C CYGD:YGR195w
EvolutionaryTrace:P46948 NextBio:973121 Genevestigator:P46948
GermOnline:YGR195W Uniprot:P46948
Length = 246
Score = 132 (51.5 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 40/124 (32%), Positives = 66/124 (53%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
LR D R +++ R + T ++A GS+Y E GN K+I V GP+E + K+ M ++
Sbjct: 12 LRLDGRRWNELRRFESSINTHP-HAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKA 70
Query: 94 RLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
LN +V+ T F+ R + S HK + + L + E ++L +P+T +D+ VL
Sbjct: 71 LLNVSVNITKFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVL 129
Query: 148 ESGG 151
E G
Sbjct: 130 EQDG 133
>CGD|CAL0002905 [details] [associations]
symbol:orf19.4582 species:5476 "Candida albicans" [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0034473 "U1
snRNA 3'-end processing" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] InterPro:IPR001247 CGD:CAL0002905
InterPro:IPR015847 Pfam:PF01138 EMBL:AACQ01000005 EMBL:AACQ01000006
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 RefSeq:XP_722654.1 RefSeq:XP_722799.1
ProteinModelPortal:Q5AMR4 STRING:Q5AMR4 GeneID:3635514
GeneID:3635642 KEGG:cal:CaO19.12051 KEGG:cal:CaO19.4582
Uniprot:Q5AMR4
Length = 240
Score = 130 (50.8 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 36/122 (29%), Positives = 66/122 (54%)
Query: 37 LRPDSRGFHQCRPAFFRTGA-VNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R NS+ GS+Y E GNTKV+ +V GP E + ++ +S
Sbjct: 9 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERAN 68
Query: 95 LNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVL-ES 149
+ N++ +F+T R + S ++ + + L K E ++++ +P+T + + VL +
Sbjct: 69 IEVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVLCQD 128
Query: 150 GG 151
GG
Sbjct: 129 GG 130
>GENEDB_PFALCIPARUM|PFB0415c [details] [associations]
symbol:PFB0415c "hypothetical protein"
species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001247 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AE001362 RefSeq:XP_001349602.2
ProteinModelPortal:O96177 EnsemblProtists:PFB0415c:mRNA
GeneID:812684 KEGG:pfa:PFB0415c EuPathDB:PlasmoDB:PF3D7_0209200
HOGENOM:HOG000284275 ProtClustDB:CLSZ2446608 Uniprot:O96177
Length = 275
Score = 126 (49.4 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 28/114 (24%), Positives = 54/114 (47%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R ++R ++ R F + G + S + GNTK++ +V+GP K YS G++
Sbjct: 32 RINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTTVYGPNPDSKYATYSK-GKVFL 90
Query: 98 NVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+V T D S+L + + I+LE +P+ ++ + L+++ G
Sbjct: 91 DVKSLNINTIGASDRQRDDDIKSLLIECISNIILLEKYPQCSIKIKCLIIQDDG 144
>UNIPROTKB|O96177 [details] [associations]
symbol:PFB0415c "3' exoribonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001247 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AE001362 RefSeq:XP_001349602.2
ProteinModelPortal:O96177 EnsemblProtists:PFB0415c:mRNA
GeneID:812684 KEGG:pfa:PFB0415c EuPathDB:PlasmoDB:PF3D7_0209200
HOGENOM:HOG000284275 ProtClustDB:CLSZ2446608 Uniprot:O96177
Length = 275
Score = 126 (49.4 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 28/114 (24%), Positives = 54/114 (47%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R ++R ++ R F + G + S + GNTK++ +V+GP K YS G++
Sbjct: 32 RINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTTVYGPNPDSKYATYSK-GKVFL 90
Query: 98 NVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+V T D S+L + + I+LE +P+ ++ + L+++ G
Sbjct: 91 DVKSLNINTIGASDRQRDDDIKSLLIECISNIILLEKYPQCSIKIKCLIIQDDG 144
>ASPGD|ASPL0000041827 [details] [associations]
symbol:AN2153 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
InterPro:IPR001247 Pfam:PF01138 EMBL:BN001307 InterPro:IPR020568
SUPFAM:SSF54211 eggNOG:COG0689 KO:K12587 OrthoDB:EOG415KPS
EMBL:AACD01000034 RefSeq:XP_659757.1 ProteinModelPortal:Q5BBC7
STRING:Q5BBC7 EnsemblFungi:CADANIAT00008831 GeneID:2875444
KEGG:ani:AN2153.2 HOGENOM:HOG000167506 OMA:NVLAGCI Uniprot:Q5BBC7
Length = 324
Score = 88 (36.0 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIR-GQGSD--HKDFSSMLHKALEG 128
K+ +V GP+ ++ +S L +V Y FA R G D +D L AL G
Sbjct: 89 KLACTVHGPKPLPRSATFSPNLVLTTHVKYAPFAARKRKGHIRDASERDLGVHLETALRG 148
Query: 129 AIILETFPKTTVDVFALVLES 149
I+ E +PK+ +D+ +LE+
Sbjct: 149 VIVAERWPKSGLDITITILEA 169
Score = 79 (32.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 23/56 (41%), Positives = 29/56 (51%)
Query: 20 PTRKTRPPIFSGSDVDWL------RPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF 68
P TRPPIF+ S RP R ++ R F +TG + SASGS+Y EF
Sbjct: 10 PPGGTRPPIFASSIKPTATATAAERPQRQRQPNELRKIFLKTGLIPSASGSSYLEF 65
>POMBASE|SPAC3G9.10c [details] [associations]
symbol:rrp41 "exosomal 3'-to-5' phosphorolytic
exoribonuclease Rrp41 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISO] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=ISO] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=ISO] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
PomBase:SPAC3G9.10c Pfam:PF01138 GO:GO:0005829 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0044732 GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
KO:K11600 GO:GO:0000176 GO:GO:0000175 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
eggNOG:COG0689 HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666
EMBL:D89141 PIR:T11646 PIR:T11740 RefSeq:NP_594082.1
ProteinModelPortal:O42872 IntAct:O42872 STRING:O42872
EnsemblFungi:SPAC3G9.10c.1 GeneID:2543451 KEGG:spo:SPAC3G9.10c
OMA:AIMPKTG OrthoDB:EOG45MRFG NextBio:20804464 Uniprot:O42872
Length = 242
Score = 114 (45.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 36/123 (29%), Positives = 62/123 (50%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNI 92
++ LR D R + + R R G S +GSA+ E GNTKV+ V GP E K+ ++
Sbjct: 9 LEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADR 68
Query: 93 GRLNCNVSYTTFAT-PIRGQ-GSDHK-DFSSM-LHKALEGAIILETFPKTTVDVFALVLE 148
+N ++ +F+T ++ + SD + + L E I E +P++ + V+ VL+
Sbjct: 69 TFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQ 128
Query: 149 SGG 151
G
Sbjct: 129 DDG 131
>CGD|CAL0003194 [details] [associations]
symbol:orf19.168 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IEA]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IEA] [GO:0071035
"nuclear polyadenylation-dependent rRNA catabolic process"
evidence=IEA] [GO:0071039 "nuclear polyadenylation-dependent CUT
catabolic process" evidence=IEA] [GO:0071028 "nuclear mRNA
surveillance" evidence=IEA] [GO:0071051 "polyadenylation-dependent
snoRNA 3'-end processing" evidence=IEA] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR001247 CGD:CAL0003194 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AACQ01000245 RefSeq:XP_710705.1 GeneID:3647689
KEGG:cal:CaO19.168 Uniprot:Q59LV6
Length = 291
Score = 88 (36.0 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 49 PAFF-RTGAVNSASGSAYAEFGNTKVIVSVFGPR 81
P+FF + +++A+GSAY E NT + VS+FGPR
Sbjct: 39 PSFFLKHSIIDNANGSAYLEINNTIIEVSIFGPR 72
Score = 62 (26.9 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 114 DHKDFSSMLHKALEGAIILETFPKTTVDV 142
+HK SS L + ++ILE +PK+T+D+
Sbjct: 129 EHK-LSSYLETCVLSSLILEKYPKSTIDI 156
>UNIPROTKB|Q84T68 [details] [associations]
symbol:RRP46 "Exosome complex exonuclease RRP46 homolog"
species:39947 "Oryza sativa Japonica Group" [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0004536
"deoxyribonuclease activity" evidence=IDA] [GO:0004540
"ribonuclease activity" evidence=IDA] [GO:0042802 "identical
protein binding" evidence=IPI] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005730 GO:GO:0003727
EMBL:DP000009 EMBL:AP008209 GO:GO:0003690 GO:GO:0004527
GO:GO:0000178 GO:GO:0004540 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0004536 GO:GO:0006364 eggNOG:COG0689 SUPFAM:SSF55666
KO:K12590 EMBL:AC120506 EMBL:AK069107 RefSeq:NP_001051936.1
UniGene:Os.47503 PDB:3HKM PDBsum:3HKM ProteinModelPortal:Q84T68
STRING:Q84T68 EnsemblPlants:LOC_Os03g63720.1 GeneID:4334824
KEGG:dosa:Os03t0854200-01 KEGG:osa:4334824 Gramene:Q84T68
OMA:EKACIEV ProtClustDB:CLSN2684812 EvolutionaryTrace:Q84T68
Uniprot:Q84T68
Length = 238
Score = 104 (41.7 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 32/115 (27%), Positives = 52/115 (45%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + N + +
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKG--ENPEKASI 62
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V + P+ GQ G K++ L + L+ +L P TT V V+ + G
Sbjct: 63 EVVWK----PMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDG 113
>TAIR|locus:2075351 [details] [associations]
symbol:AT3G46210 "AT3G46210" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
[GO:0051604 "protein maturation" evidence=RCA] InterPro:IPR001247
Pfam:PF01138 EMBL:CP002686 GenomeReviews:BA000014_GR
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
HOGENOM:HOG000229515 KO:K12590 OMA:VRETCEA ProtClustDB:CLSN2684812
EMBL:AL355775 EMBL:BT003125 EMBL:AK228171 EMBL:AK317261
EMBL:AK317537 IPI:IPI00521571 PIR:T49262 RefSeq:NP_001030817.1
RefSeq:NP_001030818.1 RefSeq:NP_001030819.1 RefSeq:NP_001078250.1
RefSeq:NP_001190019.1 RefSeq:NP_190207.1 UniGene:At.43331
ProteinModelPortal:Q9LX74 SMR:Q9LX74 IntAct:Q9LX74 STRING:Q9LX74
PaxDb:Q9LX74 PRIDE:Q9LX74 EnsemblPlants:AT3G46210.1
EnsemblPlants:AT3G46210.2 EnsemblPlants:AT3G46210.3
EnsemblPlants:AT3G46210.4 EnsemblPlants:AT3G46210.5
EnsemblPlants:AT3G46210.6 GeneID:823766 KEGG:ath:AT3G46210
TAIR:At3g46210 InParanoid:Q9LX74 PhylomeDB:Q9LX74
Genevestigator:Q9LX74 Uniprot:Q9LX74
Length = 239
Score = 103 (41.3 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 32/115 (27%), Positives = 50/115 (43%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ GSA G+TKV+ +V+GP+ K N + C
Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKN--ENAEKA-C 61
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ P GQ G K++ +L + ++ +L P TT V V+ G
Sbjct: 62 ---FEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDG 113
>ASPGD|ASPL0000013004 [details] [associations]
symbol:AN3812 species:162425 "Emericella nidulans"
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] InterPro:IPR001247 Pfam:PF01138 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0004519 InterPro:IPR020568 SUPFAM:SSF54211
KO:K11600 eggNOG:COG0689 HOGENOM:HOG000229515 RefSeq:XP_661416.1
ProteinModelPortal:Q5B6L8 STRING:Q5B6L8
EnsemblFungi:CADANIAT00004900 GeneID:2873233 KEGG:ani:AN3812.2
OMA:GCKQVRE OrthoDB:EOG4H1F52 Uniprot:Q5B6L8
Length = 265
Score = 103 (41.3 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 34/125 (27%), Positives = 59/125 (47%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA-MMYSNIGR- 94
LR D R +++ R + ++SGS+Y GNT ++ SV GP E ++ + G
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTILCSVHGPAEGRRGDATGGSAGSS 73
Query: 95 ---LNCNVSYTTFATPIRGQ---GSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ +V+ FA+ R + GSD + +S L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNIAGFASVDRKRRAGGSDRQSGRIASTLRSAFQSHLHTYLYPHSTISIHVSV 133
Query: 147 LESGG 151
L S G
Sbjct: 134 LSSDG 138
>UNIPROTKB|G4MSP2 [details] [associations]
symbol:MGG_07084 "3' exoribonuclease" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001247 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:CM001232 KO:K12587 RefSeq:XP_003715270.1
ProteinModelPortal:G4MSP2 EnsemblFungi:MGG_07084T0 GeneID:2682969
KEGG:mgr:MGG_07084 Uniprot:G4MSP2
Length = 302
Score = 103 (41.3 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIR-G--QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ ++ Y FAT R G + S +D S L AL G
Sbjct: 79 KLSCTVHGPRALPRSTPFSPHIILSTHIKYAPFATKQRRGYIRDSTERDLSVHLETALRG 138
Query: 129 AIILETFPKTTVDVFALVLE 148
II + +PK+ VDV V+E
Sbjct: 139 VIIADRWPKSGVDVIVSVIE 158
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 151 135 0.00091 102 3 11 22 0.40 31
30 0.44 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 31
No. of states in DFA: 590 (63 KB)
Total size of DFA: 133 KB (2083 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.86u 0.10s 12.96t Elapsed: 00:00:01
Total cpu time: 12.87u 0.10s 12.97t Elapsed: 00:00:01
Start: Tue May 21 01:13:29 2013 End: Tue May 21 01:13:30 2013