BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037553
(151 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255578123|ref|XP_002529931.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
gi|223530561|gb|EEF32439.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
Length = 180
Score = 251 bits (642), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 120/151 (79%), Positives = 136/151 (90%), Gaps = 4/151 (2%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MA+KP + T TYSP P+RK+RPPIF DVDW+RPD R F +CRPA+FRTGAVN+A
Sbjct: 1 MASKPGSAPT---TYSPT-PSRKSRPPIFKHYDVDWVRPDGRSFSECRPAYFRTGAVNAA 56
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSS 120
+GSAYAEFGNTKVIVSVFGPRESKKAMMYS++GRLNCNVSYTTF+TP+RGQGSD K+FSS
Sbjct: 57 AGSAYAEFGNTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFSTPVRGQGSDCKEFSS 116
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGG 151
MLHK+LEGAI+LETFPKTTVDVFALVLESGG
Sbjct: 117 MLHKSLEGAIMLETFPKTTVDVFALVLESGG 147
>gi|356539380|ref|XP_003538176.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
Length = 255
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/141 (85%), Positives = 128/141 (90%), Gaps = 6/141 (4%)
Query: 13 ATYSPIDPT--RKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGN 70
ATYSP PT RK +PPIF DW+RPD RGFHQCRPAFFRTGAVN+ASGSAYAEFGN
Sbjct: 10 ATYSP-SPTTNRKKKPPIFKE---DWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGN 65
Query: 71 TKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAI 130
TKVIVSVFGPRESKKAMMYS+IGRLNCNVS+TTFATPIRGQGSDHK++ +MLHKALEGAI
Sbjct: 66 TKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPIRGQGSDHKEYCAMLHKALEGAI 125
Query: 131 ILETFPKTTVDVFALVLESGG 151
ILETFPKTTVDVFALVLES G
Sbjct: 126 ILETFPKTTVDVFALVLESSG 146
>gi|449456022|ref|XP_004145749.1| PREDICTED: exosome complex component MTR3-like [Cucumis sativus]
gi|449531263|ref|XP_004172607.1| PREDICTED: exosome complex component MTR3-like [Cucumis sativus]
Length = 258
Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 112/131 (85%), Positives = 124/131 (94%)
Query: 21 TRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP 80
KTRP +F DV+W+RPD RGFHQCRPAFFRTGAVN+ASGSAYAEFGNTKVIVSVFGP
Sbjct: 18 VHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGP 77
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTV 140
RESKKAMMYS+IGRLNC+VSYTTF+TP+RGQGS++KDFSSMLHK+LEGAIILE+FPKTTV
Sbjct: 78 RESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTV 137
Query: 141 DVFALVLESGG 151
DVFALVLESGG
Sbjct: 138 DVFALVLESGG 148
>gi|225435349|ref|XP_002285257.1| PREDICTED: exosome complex component MTR3 [Vitis vinifera]
gi|147834996|emb|CAN61380.1| hypothetical protein VITISV_037546 [Vitis vinifera]
gi|297746275|emb|CBI16331.3| unnamed protein product [Vitis vinifera]
Length = 254
Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 120/151 (79%), Positives = 129/151 (85%), Gaps = 6/151 (3%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MA K + T + TYSP P KT+ PIF DVDW+RPD RGFHQCRPAF +TGAVN+A
Sbjct: 1 MAGKSAATPS---TYSP-SPAPKTKRPIFQ--DVDWVRPDGRGFHQCRPAFLKTGAVNAA 54
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSS 120
SGSAYAEFGNTKVIVSVFGPRESKKAM YS GRLNCNVSYTTFA PIRGQGSDHK +SS
Sbjct: 55 SGSAYAEFGNTKVIVSVFGPRESKKAMAYSGTGRLNCNVSYTTFAMPIRGQGSDHKGYSS 114
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGG 151
MLHKALEGAII+E+FPKTTVDVFALVLESGG
Sbjct: 115 MLHKALEGAIIVESFPKTTVDVFALVLESGG 145
>gi|357472161|ref|XP_003606365.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
gi|355507420|gb|AES88562.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
Length = 258
Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 118/151 (78%), Positives = 129/151 (85%), Gaps = 5/151 (3%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MA K TT ATYSP T K +P + + DW RPD RGFHQCRPAFFRTGAVN+A
Sbjct: 1 MAGKSGTT---PATYSPSLTTGKKKPLLLK--EEDWTRPDGRGFHQCRPAFFRTGAVNAA 55
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSS 120
SGSAYAEFGNTKVIVSVFGPRESKKAMMYS+ GRLNCNVSYTTF+TP+RGQGSDHK++SS
Sbjct: 56 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSDTGRLNCNVSYTTFSTPVRGQGSDHKEYSS 115
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGG 151
MLHKALEGAIIL++FPKTTVDVFALVLES G
Sbjct: 116 MLHKALEGAIILDSFPKTTVDVFALVLESSG 146
>gi|297803352|ref|XP_002869560.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
gi|297315396|gb|EFH45819.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/151 (76%), Positives = 129/151 (85%), Gaps = 4/151 (2%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MAAKP T TYSP +TR PIF SD+DW RPD RGFHQCRPA +TGAV+SA
Sbjct: 1 MAAKPGAAT---PTYSP-KLVGRTRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSA 56
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSS 120
SGSAYAEFGNTKVIVSVFGPRESKKAM++S++GRLNCNVSYTTFA+P GQG+DHK++SS
Sbjct: 57 SGSAYAEFGNTKVIVSVFGPRESKKAMVFSDVGRLNCNVSYTTFASPTLGQGTDHKEYSS 116
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGG 151
MLHKALEG II+ETFPKTTVDVFALVLESGG
Sbjct: 117 MLHKALEGVIIMETFPKTTVDVFALVLESGG 147
>gi|224106782|ref|XP_002314284.1| predicted protein [Populus trichocarpa]
gi|222850692|gb|EEE88239.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/127 (88%), Positives = 119/127 (93%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
R FS SDVDWLRPD RGFHQCRPAFFRTGAVNSA+GSAYAEFGNTKVIVSVFGPRESK
Sbjct: 22 RSSFFSDSDVDWLRPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESK 81
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
KAM+YS++GRLNCNVS TTFATP RG GSD+K+FSSMLHKALEGAI+LETFPKTTVDVFA
Sbjct: 82 KAMVYSDVGRLNCNVSCTTFATPARGLGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFA 141
Query: 145 LVLESGG 151
LVLESGG
Sbjct: 142 LVLESGG 148
>gi|118489169|gb|ABK96391.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 257
Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 111/127 (87%), Positives = 119/127 (93%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
R FS SD+DWLRPD RGFHQCRPAFFRTGAVNSA+GSAYAEFGNTKVIVSVFGPRESK
Sbjct: 22 RSSFFSDSDIDWLRPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESK 81
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
KAM+YS++GRLNCNVS TTFATP RG GSD+K+FSSMLHKALEGAI+LETFPKTTVDVFA
Sbjct: 82 KAMVYSDVGRLNCNVSCTTFATPARGLGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFA 141
Query: 145 LVLESGG 151
LVLESGG
Sbjct: 142 LVLESGG 148
>gi|42567185|ref|NP_194479.2| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|124300968|gb|ABN04736.1| At4g27490 [Arabidopsis thaliana]
gi|124301080|gb|ABN04792.1| At4g27490 [Arabidopsis thaliana]
gi|332659949|gb|AEE85349.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
Length = 256
Score = 238 bits (607), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 114/151 (75%), Positives = 128/151 (84%), Gaps = 4/151 (2%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MAAKP T TYSP ++R PIF SD+DW RPD RGFHQCRPA +TGAV+SA
Sbjct: 1 MAAKPGAAT---PTYSP-KIVGRSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSA 56
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSS 120
SGSAYAEFGNTKVIVSVFGPRESKKAM+YS++GRLNCNVSYT FA+P GQG+DHK++SS
Sbjct: 57 SGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSS 116
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGG 151
MLHKALEG I++ETFPKTTVDVFALVLESGG
Sbjct: 117 MLHKALEGVIMMETFPKTTVDVFALVLESGG 147
>gi|356542629|ref|XP_003539769.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
Length = 254
Score = 238 bits (606), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 119/151 (78%), Positives = 128/151 (84%), Gaps = 6/151 (3%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MA K +T ATYSP T K +P +F + D RPD R FHQCRPAFFRTGAVN+A
Sbjct: 1 MAGKGGST---PATYSPSPTTDKKKPSLF---NEDLARPDGRSFHQCRPAFFRTGAVNAA 54
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSS 120
SGSAYAE GNTKVIVSVFGPRESKKAMMYS+IGRLNCNVS+TTFATPIRGQGSDHK++SS
Sbjct: 55 SGSAYAEVGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPIRGQGSDHKEYSS 114
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGG 151
MLHKALEGAIILETFPKTTVDVFALVLES G
Sbjct: 115 MLHKALEGAIILETFPKTTVDVFALVLESSG 145
>gi|388499452|gb|AFK37792.1| unknown [Lotus japonicus]
Length = 253
Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/151 (76%), Positives = 127/151 (84%), Gaps = 6/151 (3%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MA K T ATYSP T K + + DW+RPD RGFHQCRPAFFRTGAVN+A
Sbjct: 1 MAGKAGAT---PATYSPSPTTDKKKTSLIKE---DWVRPDGRGFHQCRPAFFRTGAVNAA 54
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSS 120
SGSAYAEFGNTKVIVSVFGPRESKKAM+YS++GRLNCNVSYTTFATP+RGQGSDHKD+S+
Sbjct: 55 SGSAYAEFGNTKVIVSVFGPRESKKAMLYSDVGRLNCNVSYTTFATPVRGQGSDHKDYSA 114
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGG 151
ML KAL GAIILE+FPKTTVDVFALVLESGG
Sbjct: 115 MLDKALGGAIILESFPKTTVDVFALVLESGG 145
>gi|224132514|ref|XP_002328307.1| predicted protein [Populus trichocarpa]
gi|222837822|gb|EEE76187.1| predicted protein [Populus trichocarpa]
Length = 263
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 108/130 (83%), Positives = 119/130 (91%)
Query: 22 RKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR 81
+ RPP F+ SDVDW R D RGFHQCR AFFRTGAVNSA+GSAYAEFGNTKVIVSVFGPR
Sbjct: 25 KAQRPPFFTDSDVDWTRSDGRGFHQCRSAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPR 84
Query: 82 ESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
ESKKAMMYS+ G+LNCNVSYTTFAT + GQGSD+K+FS+MLHKALEGA++LETFPKTTVD
Sbjct: 85 ESKKAMMYSDKGKLNCNVSYTTFATTVHGQGSDNKEFSTMLHKALEGAVMLETFPKTTVD 144
Query: 142 VFALVLESGG 151
VFALVLESGG
Sbjct: 145 VFALVLESGG 154
>gi|118487722|gb|ABK95685.1| unknown [Populus trichocarpa]
Length = 257
Score = 234 bits (597), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 110/127 (86%), Positives = 117/127 (92%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
R FS SDVDWLRPD R F QCRPAFFRTGAVNSA+GSAYAEFGNTKVIVSVFGPRESK
Sbjct: 22 RSSFFSDSDVDWLRPDGRDFQQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESK 81
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
KAM+YS++GRLNCNVS TTFATP RG GSD+K+FSSMLHKALEGAI+LETFPKTTVDVFA
Sbjct: 82 KAMVYSDVGRLNCNVSCTTFATPARGLGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFA 141
Query: 145 LVLESGG 151
LVLESGG
Sbjct: 142 LVLESGG 148
>gi|414887731|tpg|DAA63745.1| TPA: hypothetical protein ZEAMMB73_187174 [Zea mays]
Length = 261
Score = 211 bits (537), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 96/119 (80%), Positives = 107/119 (89%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D DW R D R FH CRPAF +TG +ASGSAYAEFG TKVIVSVFGPRESKKAMMYS++
Sbjct: 34 DADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDV 93
Query: 93 GRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
GRLNCNVSYTTFATP+RGQG+D+K++SSMLHKALEGA++L TFPKTTVDVFALVLESGG
Sbjct: 94 GRLNCNVSYTTFATPVRGQGADNKEYSSMLHKALEGAVMLHTFPKTTVDVFALVLESGG 152
>gi|242046408|ref|XP_002461075.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
gi|241924452|gb|EER97596.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
Length = 261
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/119 (80%), Positives = 107/119 (89%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D DW R D R FH CRPAF +TG +ASGSAYAEFG TKVIVSVFGPRESKKAMMYS+I
Sbjct: 34 DADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDI 93
Query: 93 GRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
GRLNCNVSYTTFATP+RGQG+D+K++SSML+KALEGA++L TFPKTTVDVFALVLESGG
Sbjct: 94 GRLNCNVSYTTFATPVRGQGADNKEYSSMLYKALEGAVMLHTFPKTTVDVFALVLESGG 152
>gi|41469640|gb|AAS07363.1| putative exoribonuclease [Oryza sativa Japonica Group]
gi|108712055|gb|ABF99850.1| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|125588609|gb|EAZ29273.1| hypothetical protein OsJ_13338 [Oryza sativa Japonica Group]
gi|215768717|dbj|BAH00946.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 260
Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 95/119 (79%), Positives = 106/119 (89%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D DW R D R FH CRPAF +TG +ASGSAYAEFG TKVIVSVFGPRESKKAM+YS+
Sbjct: 34 DADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDT 93
Query: 93 GRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
GRLNCNVSYTTFATPIRGQG+D+K++S+MLHKALEGA++L TFPKTTVDVFALVLESGG
Sbjct: 94 GRLNCNVSYTTFATPIRGQGTDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGG 152
>gi|115474519|ref|NP_001060856.1| Os08g0116800 [Oryza sativa Japonica Group]
gi|50725627|dbj|BAD33094.1| putative ribonuclease PH [Oryza sativa Japonica Group]
gi|113622825|dbj|BAF22770.1| Os08g0116800 [Oryza sativa Japonica Group]
gi|125559948|gb|EAZ05396.1| hypothetical protein OsI_27604 [Oryza sativa Indica Group]
gi|125601990|gb|EAZ41315.1| hypothetical protein OsJ_25825 [Oryza sativa Japonica Group]
gi|215686578|dbj|BAG88831.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 262
Score = 208 bits (529), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 95/119 (79%), Positives = 105/119 (88%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D DW R D R FH CRPAF +TG +ASGSAYAEFG TKVIVSVFGPRESKKAM+YS+
Sbjct: 36 DADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDT 95
Query: 93 GRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
GRLNCNVSYTTFATPIRGQG D+K++S+MLHKALEGA++L TFPKTTVDVFALVLESGG
Sbjct: 96 GRLNCNVSYTTFATPIRGQGMDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGG 154
>gi|125546411|gb|EAY92550.1| hypothetical protein OsI_14290 [Oryza sativa Indica Group]
Length = 260
Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 94/119 (78%), Positives = 106/119 (89%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D DW R D R FH CRPAF +TG +ASGSAYAEFG TKVIVSVFGPRESKKAM+YS+
Sbjct: 34 DADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDT 93
Query: 93 GRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
GRLNCNVSYTTFATP+RGQG+D+K++S+MLHKALEGA++L TFPKTTVDVFALVLESGG
Sbjct: 94 GRLNCNVSYTTFATPMRGQGTDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGG 152
>gi|357121840|ref|XP_003562625.1| PREDICTED: exosome complex component MTR3-like [Brachypodium
distachyon]
Length = 262
Score = 204 bits (519), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 94/119 (78%), Positives = 104/119 (87%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D DW R D R FH CRPAF +TG +ASGSAYAEFG TKVIVSVFGPRESKKAM+YS+
Sbjct: 35 DADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDT 94
Query: 93 GRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
GRLNCNVSYTTFAT IRGQG D+K++S MLHKALEGA++L+TFPKTTVDVFALVLESGG
Sbjct: 95 GRLNCNVSYTTFATGIRGQGLDNKEYSEMLHKALEGAVMLDTFPKTTVDVFALVLESGG 153
>gi|326521482|dbj|BAK00317.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 197 bits (502), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 91/119 (76%), Positives = 102/119 (85%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D DW R D R H CRPAF +TG +ASGSAYAEFG TKVIVSVFGPRESKKAM+YS+
Sbjct: 35 DADWPRADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDT 94
Query: 93 GRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
GRLNC+VSYTTFAT IRGQG ++K++S MLHKALEGA++L TFPKTTVDVFALVLESGG
Sbjct: 95 GRLNCSVSYTTFATGIRGQGLENKEYSGMLHKALEGAVMLHTFPKTTVDVFALVLESGG 153
>gi|326514708|dbj|BAJ99715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 197 bits (502), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 91/119 (76%), Positives = 102/119 (85%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D DW R D R H CRPAF +TG +ASGSAYAEFG TKVIVSVFGPRESKKAM+YS+
Sbjct: 35 DADWPRADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDT 94
Query: 93 GRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
GRLNC+VSYTTFAT IRGQG ++K++S MLHKALEGA++L TFPKTTVDVFALVLESGG
Sbjct: 95 GRLNCSVSYTTFATGIRGQGLENKEYSGMLHKALEGAVMLHTFPKTTVDVFALVLESGG 153
>gi|294464676|gb|ADE77845.1| unknown [Picea sitchensis]
Length = 256
Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 93/154 (60%), Positives = 116/154 (75%), Gaps = 9/154 (5%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MA KP T +T + D RK+ + D +R D R +CR AF +TGAVN+A
Sbjct: 1 MANKPGTISTYTVPAAAED--RKSHGRLLK----DGIRSDGRQLLECRLAFMKTGAVNAA 54
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKD 117
+GSAYAEFG+TKVIVSVFGPRES KA +YS+ GRLNC+VS+ TF+TPIRG QG++H++
Sbjct: 55 AGSAYAEFGSTKVIVSVFGPRESSKAQIYSDTGRLNCSVSFATFSTPIRGKLSQGTEHRE 114
Query: 118 FSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+S+MLHKALEGA++L TFPK TVDVFALVLESGG
Sbjct: 115 YSTMLHKALEGAVMLNTFPKATVDVFALVLESGG 148
>gi|293335373|ref|NP_001168912.1| uncharacterized protein LOC100382718 [Zea mays]
gi|223973667|gb|ACN31021.1| unknown [Zea mays]
Length = 209
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/100 (83%), Positives = 94/100 (94%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQ 111
+TG +ASGSAYAEFG TKVIVSVFGPRESKKAMMYS++GRLNCNVSYTTFATP+RGQ
Sbjct: 1 MQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFATPVRGQ 60
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
G+D+K++SSMLHKALEGA++L TFPKTTVDVFALVLESGG
Sbjct: 61 GADNKEYSSMLHKALEGAVMLHTFPKTTVDVFALVLESGG 100
>gi|302780062|ref|XP_002971806.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
gi|300160938|gb|EFJ27555.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
Length = 250
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 99/131 (75%), Gaps = 7/131 (5%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
R P+FS D R D R CR AF RTGAV +A+GSAYAE G+TKVIVSVFGPRESK
Sbjct: 17 RAPVFSS---DGERIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSVFGPRESK 73
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTV 140
KA +S+ GRLNCNV Y +FATP+RG+ ++ +D SSML+K++ GA+ L TFPKTTV
Sbjct: 74 KAEAFSDAGRLNCNVKYCSFATPVRGKMGAANAEERDLSSMLYKSVVGAVDLRTFPKTTV 133
Query: 141 DVFALVLESGG 151
DVFALVL+SGG
Sbjct: 134 DVFALVLQSGG 144
>gi|302760867|ref|XP_002963856.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
gi|300169124|gb|EFJ35727.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
Length = 250
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 99/131 (75%), Gaps = 7/131 (5%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
R P+FS D R D R CR AF RTGAV +A+GSAYAE G+TKVIVSVFGPRESK
Sbjct: 17 RAPVFSS---DGERIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSVFGPRESK 73
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTV 140
KA +S+ GRLNCNV Y +FATP+RG+ ++ +D SSML+K++ GA+ L TFPKTTV
Sbjct: 74 KAEAFSDAGRLNCNVKYCSFATPVRGKMGAANAEERDLSSMLYKSVVGAVDLRTFPKTTV 133
Query: 141 DVFALVLESGG 151
DVFALVL+SGG
Sbjct: 134 DVFALVLQSGG 144
>gi|307109085|gb|EFN57324.1| hypothetical protein CHLNCDRAFT_21722, partial [Chlorella
variabilis]
Length = 223
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 78/105 (74%), Gaps = 1/105 (0%)
Query: 47 CRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFAT 106
CR A +TG ++ ASGSAYAEFG+TKV+V V+GPR+S++ + YS GR+NC+V +FA+
Sbjct: 1 CR-AVLKTGVISQASGSAYAEFGHTKVMVGVYGPRQSERRVGYSEQGRVNCDVKLASFAS 59
Query: 107 PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
RGQ ++ ++ S+ L ALE A L +FPK +VDVF LVLE+GG
Sbjct: 60 RQRGQSAEERELSAALQTALEAAADLASFPKASVDVFVLVLEAGG 104
>gi|4972074|emb|CAB43881.1| putative protein [Arabidopsis thaliana]
gi|7269603|emb|CAB81399.1| putative protein [Arabidopsis thaliana]
Length = 244
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 79/151 (52%), Gaps = 53/151 (35%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MAAKP T TYSP ++R PIF SD+DW RPD RGFHQCRPA T
Sbjct: 1 MAAKPGAAT---PTYSP-KIVGRSRLPIFKDSDLDWSRPDGRGFHQCRPACKNT------ 50
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSS 120
F ++K ++ G+DHK++SS
Sbjct: 51 -------FDSSKFLI------------------------------------GTDHKEYSS 67
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGG 151
MLHKALEG I++ETFPKTTVDVFALVLESGG
Sbjct: 68 MLHKALEGVIMMETFPKTTVDVFALVLESGG 98
>gi|255076363|ref|XP_002501856.1| predicted protein [Micromonas sp. RCC299]
gi|226517120|gb|ACO63114.1| predicted protein [Micromonas sp. RCC299]
Length = 232
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 78/120 (65%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAM--MYSNIGRL 95
R D R Q RP F +TG ++ A+GSAY E TKV+ V+GPR+ + + + GRL
Sbjct: 5 REDGRSAEQMRPIFVKTGVISQAAGSAYVELDKTKVMCGVYGPRQGGPGIDKVEFDRGRL 64
Query: 96 NCNVSYTTFATPI-RG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ +V TFAT RG QG ++FSS++H+AL GA++ ETFPKTTVDVFA VLE+ G
Sbjct: 65 DVDVKLATFATSGPRGKVAQGDAEREFSSIVHRALSGAVMTETFPKTTVDVFATVLEANG 124
>gi|427785073|gb|JAA57988.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Rhipicephalus pulchellus]
Length = 284
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R F RP F +TG V+ A GSAY E GNTKV+ SV+GPRE + ++ G++NC
Sbjct: 34 RHDGRQFGDVRPIFLKTGVVSQAKGSAYIEMGNTKVVCSVYGPREIARRKDFTFKGQINC 93
Query: 98 NVSYTTFATPIRGQGSDHKD---FSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ ++ PIR Q + + +S +L KAL + L FPK+TVDVF LV+E+ G
Sbjct: 94 EFRFAQYSCPIRRQHLNDGEALHYSQLLEKALAPVVCLHKFPKSTVDVFVLVIENDG 150
>gi|346469375|gb|AEO34532.1| hypothetical protein [Amblyomma maculatum]
Length = 287
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R F RP F +TG V+ A GSAY E GNTKV+ SV+GPRE + ++ G++NC
Sbjct: 35 RHDGRQFGDIRPIFLKTGVVSQAKGSAYVEMGNTKVVCSVYGPREIARRKDFTYKGQINC 94
Query: 98 NVSYTTFATPIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ ++ IR Q S+ FS +L +AL + L FPK+TVDVF VLE+ G
Sbjct: 95 EFRFAQYSCQIRRQHLNDSEALHFSQLLEEALAPVVCLHKFPKSTVDVFVYVLENDG 151
>gi|346469377|gb|AEO34533.1| hypothetical protein [Amblyomma maculatum]
Length = 287
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R F RP F +TG V+ A GSAY E GNTKV+ SV+GPRE + ++ G++NC
Sbjct: 35 RHDGRQFGDIRPIFLKTGVVSQAKGSAYVEMGNTKVVCSVYGPREIARRKDFTYKGQINC 94
Query: 98 NVSYTTFATPIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ ++ IR Q S+ FS +L +AL + L FPK+TVDVF VLE+ G
Sbjct: 95 EFRFAQYSCQIRRQHLNDSEALHFSQLLEEALAPVVCLHKFPKSTVDVFVYVLENDG 151
>gi|302834702|ref|XP_002948913.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
nagariensis]
gi|300265658|gb|EFJ49848.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
nagariensis]
Length = 238
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D RG + R F +T ++ A GSAY EFG TKV+V VFGPR+S+ + +++ GRLNC
Sbjct: 13 RADGRGLEEFRTVFIKTRVLSQAKGSAYVEFGTTKVMVGVFGPRQSEVKLGFTDTGRLNC 72
Query: 98 NVSYTTFAT---PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V T+FA+ GQ + L +ALE ++ L+ FPK DV A++LE+GG
Sbjct: 73 EVRLTSFASHKLAKSGQTQLESSAAQGLQQALEPSVQLDKFPKAVFDVSAMILEAGG 129
>gi|440802076|gb|ELR23015.1| 3' exoribonuclease family, domain 1 domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 274
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 84/143 (58%), Gaps = 10/143 (6%)
Query: 14 TYSPI-DPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTK 72
T+ P+ DP K RP F V+ R D R + RP F +TG ++ A+GSAY E TK
Sbjct: 18 TFVPLADPAPK-RPDAFV---VEGKRLDGRSPDEFRPVFLKTGVISQAAGSAYIEMNQTK 73
Query: 73 VIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFAT--PIRGQGSD--HKDFSSMLHKALEG 128
VI V+GPR++ K +YS G+LNC TFA R SD K+ S ++ +ALE
Sbjct: 74 VICGVYGPRQTPKT-VYSEKGKLNCFFKLATFAENGERRKYVSDKEEKELSMLMVQALEV 132
Query: 129 AIILETFPKTTVDVFALVLESGG 151
++ LETFPK+ +DVF LVLE G
Sbjct: 133 SLRLETFPKSELDVFVLVLEESG 155
>gi|156398683|ref|XP_001638317.1| predicted protein [Nematostella vectensis]
gi|156225437|gb|EDO46254.1| predicted protein [Nematostella vectensis]
Length = 268
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D R D R + RP F R G V+ A GSAY E NTKVI +++GPRE+ + +S GR
Sbjct: 33 DGCRQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIYGPREAPRRQEFSMKGR 92
Query: 95 LNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
L C + F+ R Q ++ K+ S ++ +ALE A+ LE FPK VD++ VLE+ G
Sbjct: 93 LTCEFKFAPFSCIYRRKHIQDAEEKENSYLVVQALEPAVCLEKFPKAQVDIYITVLENDG 152
>gi|348504192|ref|XP_003439646.1| PREDICTED: exosome complex component MTR3-like [Oreochromis
niloticus]
Length = 274
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 73/120 (60%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQC--RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGR 94
R D R Q RP F R G V+ A GSAY E GNTK++ V+GPRE+ +K GR
Sbjct: 34 RADGRRRDQVDVRPVFVRCGLVSQAKGSAYLEAGNTKLMCCVYGPRETDRKDETDMKCGR 93
Query: 95 LNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
L ++ + F+ P RG QGS KDFS MLH++L+ AI L +P++ ++V +VLE+ G
Sbjct: 94 LTTDMRFAPFSCPERGSWIQGSQDKDFSLMLHESLQPAICLHKYPRSQIEVSVMVLENSG 153
>gi|410925956|ref|XP_003976445.1| PREDICTED: exosome complex component MTR3-like [Takifugu rubripes]
Length = 268
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 73/120 (60%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQC--RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGR 94
R D R Q RP F R G V+ A GSAY E GNTK++ V+GPRE+ +K GR
Sbjct: 34 RADGRRRDQVDVRPVFVRCGLVSQAKGSAYIEAGNTKLMCCVYGPRETERKDETDMKCGR 93
Query: 95 LNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
L ++ + F+ P RG QGS KDFS+ML ++L+ A+ L +P++ ++V +VLE+ G
Sbjct: 94 LTTDMRFAPFSCPERGSWIQGSQEKDFSTMLQESLQPAVCLHKYPRSQIEVNMMVLENSG 153
>gi|156537299|ref|XP_001606070.1| PREDICTED: exosome complex component MTR3-like [Nasonia
vitripennis]
Length = 284
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R DSR + R F + G V+ A GSAY E G TKVI S F PRE YS G + C
Sbjct: 39 RVDSRKHKELRKMFIKLGVVSQAKGSAYIEMGQTKVICSAFDPREIPNKTSYSTQGEIFC 98
Query: 98 NVSYTTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ +FAT R Q ++ K++S ++ +ALE A+ FP VDV+ALVL++GG
Sbjct: 99 EFKFASFATCKRKGHQQDTEEKEYSLIMQRALEPAVCRHEFPNFQVDVYALVLDNGG 155
>gi|384491910|gb|EIE83106.1| hypothetical protein RO3G_07811 [Rhizopus delemar RA 99-880]
Length = 255
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 78/137 (56%), Gaps = 12/137 (8%)
Query: 26 PPIFSGS--------DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
PPIF + + + R D+RG R F + G V A+GSAY E GNTKV +V
Sbjct: 14 PPIFKETKELQNEILNNERKRLDNRGLEDLRAIFLKPGLVTQANGSAYIEVGNTKVACAV 73
Query: 78 FGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILET 134
+GPR+ KK+ N G LNC+ ++ F+ R + + K+FS +L +AL A+ LE
Sbjct: 74 YGPRQLKKSSFSQN-GTLNCDFKFSPFSCVKRRSAVRDPEEKEFSQILIQALSPAVRLEL 132
Query: 135 FPKTTVDVFALVLESGG 151
PK+T+D++ VLES G
Sbjct: 133 LPKSTIDIYINVLESDG 149
>gi|332030317|gb|EGI70060.1| Exosome complex exonuclease MTR3 [Acromyrmex echinatior]
Length = 282
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ R F +TG V+ A GSAY E GNTKVI SVF PRE + G L C
Sbjct: 37 RHDDRSDNELRNIFLKTGIVSQAKGSAYIEMGNTKVICSVFDPREIPNKTGFCMQGELFC 96
Query: 98 NVSYTTFA---TPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ +F+ + Q ++ K++S +L +ALE A+ L+ FP VDV+A VL++GG
Sbjct: 97 EFKFASFSHRKRKLHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLDNGG 153
>gi|380027897|ref|XP_003697651.1| PREDICTED: exosome complex component MTR3-like [Apis florea]
Length = 273
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+R D R + R F +TG V+ A GSAY E GNTKV+ SVF PRE Y G +
Sbjct: 36 IRNDKRANSEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPRELSNRNGYCTQGEIY 95
Query: 97 CNVSYTTFATP---IRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C + F+ I Q ++ K +S +L +ALE A+ L FP VDV+A+VL++ G
Sbjct: 96 CEFKFAPFSCQKRKIHQQDAEEKQYSLILQRALEPAVCLHEFPNFQVDVYAMVLDNAG 153
>gi|307178493|gb|EFN67182.1| Exosome complex exonuclease MTR3 [Camponotus floridanus]
Length = 282
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ R F +TG ++ A GSAY E GNTK+I SVF PRE Y G L C
Sbjct: 37 RHDGRSNNELRNIFLKTGIISQAKGSAYIEMGNTKIICSVFDPREVPNKTGYCVQGELFC 96
Query: 98 NVSYTTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ F+ R Q ++ K++S +L +ALE A+ L+ FP VDV+A VL++GG
Sbjct: 97 EFKFAPFSHHKRKMHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLDNGG 153
>gi|322792608|gb|EFZ16508.1| hypothetical protein SINV_11514 [Solenopsis invicta]
Length = 282
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ R F +TG V+ A GSAY E GNTK+I SVF PRE Y G L C
Sbjct: 37 RHDGRSHNEFRNIFLKTGIVSQAKGSAYIEIGNTKIICSVFDPREIPNKTGYCVQGELFC 96
Query: 98 NVSYTTFA---TPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ F+ + Q ++ K++S +L +ALE A+ L+ FP VDV+A V+++GG
Sbjct: 97 EFKFAPFSHRKRKLHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVIDNGG 153
>gi|383858041|ref|XP_003704511.1| PREDICTED: exosome complex component MTR3-like [Megachile
rotundata]
Length = 274
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ R F +TG V+ A GSAY E G+TKV+ SVF PRE Y G + C
Sbjct: 37 RSDKRTNNEIRKIFLKTGVVSQAKGSAYIEMGDTKVVCSVFDPREIPNKNGYCVQGEIYC 96
Query: 98 NVSYTTFATP---IRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ +F+ I Q ++ K +S +L +ALE A+ L FP VDV+A+VL++ G
Sbjct: 97 EFKFASFSCQKRKIHQQNAEEKQYSLILQRALEPAVCLHEFPNFQVDVYAMVLDNAG 153
>gi|350423078|ref|XP_003493378.1| PREDICTED: exosome complex component MTR3-like [Bombus impatiens]
Length = 273
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ R F +TG V+ A GSAY E GNTKV+ SVF PRE Y G + C
Sbjct: 37 RSDKRTNNEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPREVSNKNGYCAQGEIYC 96
Query: 98 NVSYTTFATP---IRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ F+ I Q ++ K +S +L +ALE A+ L FP VDV+ +VL++ G
Sbjct: 97 EFKFAPFSCQKRKIHQQNAEEKQYSLILQRALEPAVCLHEFPNFQVDVYVMVLDNAG 153
>gi|66472734|ref|NP_001018322.1| exosome complex component MTR3 [Danio rerio]
gi|123905166|sp|Q6P0I8.2|EXOS6_DANRE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|63101434|gb|AAH95173.1| Exosome component 6 [Danio rerio]
gi|68262418|gb|AAH65602.2| Exosome component 6 [Danio rerio]
gi|182890526|gb|AAI64622.1| Exosc6 protein [Danio rerio]
Length = 271
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 82/150 (54%), Gaps = 16/150 (10%)
Query: 17 PIDPTRKTRPPIFSGSDVDWLRPDS-----------RGFHQCRPAFFRTGAVNSASGSAY 65
P+D T++ R P S S + +L PD RG RP F R G V+ A GSAY
Sbjct: 2 PVD-TKRIRGPEESQSPLLFLSPDKAPKAPSSRQGVRGNGDVRPVFARCGLVSQAKGSAY 60
Query: 66 AEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSM 121
E GNTK+I SV+GP+E+ ++ GRL C+ F+ RG QGS+ +D S+
Sbjct: 61 IEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFRLAPFSCVKRGAWIQGSEERDLSAT 120
Query: 122 LHKALEGAIILETFPKTTVDVFALVLESGG 151
L ++L + L +P++ +DV +VLE+ G
Sbjct: 121 LMESLRPGVCLHRYPRSQIDVNVMVLENDG 150
>gi|340727523|ref|XP_003402091.1| PREDICTED: exosome complex component MTR3-like [Bombus terrestris]
Length = 273
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 74/152 (48%), Gaps = 17/152 (11%)
Query: 17 PIDPTRKTRP----PIFSGSDVDWL----------RPDSRGFHQCRPAFFRTGAVNSASG 62
PID R P P SDVD R D R ++ R F + G V+ A G
Sbjct: 2 PIDQKRLNGPEVTVPYHIYSDVDEKSDEVKYDLSERSDKRTNNEMRKIFLKAGIVSQAKG 61
Query: 63 SAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP---IRGQGSDHKDFS 119
SAY E GNTKV+ SVF PRE Y G + C + F+ + Q ++ K +S
Sbjct: 62 SAYIELGNTKVVCSVFDPREVSNKNSYYAQGEIYCEFKFAPFSCQKRKVHQQNAEEKQYS 121
Query: 120 SMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+L +ALE A+ L FP VDV+ +VL++ G
Sbjct: 122 LILQRALEPAVCLHEFPNFQVDVYVMVLDNAG 153
>gi|432862333|ref|XP_004069803.1| PREDICTED: exosome complex component MTR3-like [Oryzias latipes]
Length = 272
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQC--RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGR 94
R D R Q RP F R G V+ A GSAY E G+TK++ SV+GPRE+ +K GR
Sbjct: 34 RADGRQRDQVDVRPVFVRCGLVSQAKGSAYIEAGDTKLLCSVYGPRETERKDETDMKCGR 93
Query: 95 LNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
L ++ + F+ P RG QGS K+FS ML ++L+ A+ L +P++ ++V +VLE+ G
Sbjct: 94 LTTDMRFAPFSCPERGSWIQGSQDKNFSLMLQESLQPALCLHKYPRSQIEVNVMVLENSG 153
>gi|384245391|gb|EIE18885.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 195
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 62/100 (62%), Gaps = 13/100 (13%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQ 111
+ G ++ A+GSAYAEFGNTKVI V+GPRE+++ ++S GRL C+
Sbjct: 1 MKPGTLSQAAGSAYAEFGNTKVIAGVYGPREAERKEVFSTEGRLQCD------------- 47
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ ++ S L ALE A+ L+TFPK VD++ LVLES G
Sbjct: 48 NDEERELSVQLQTALEAAVRLQTFPKANVDIYCLVLESAG 87
>gi|47210411|emb|CAF91679.1| unnamed protein product [Tetraodon nigroviridis]
Length = 276
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 4/108 (3%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVSYTTFAT 106
RP F R G + A GSAY E G TK++ V+GPRE+ +K GRL +V + F+
Sbjct: 46 RPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETERKDETDMRCGRLTADVRFAPFSC 105
Query: 107 PIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
P RG QGS +DFSSML ++L+ A+ L +P++ ++V +VLE+GG
Sbjct: 106 PERGSWIQGSQDRDFSSMLLESLQPAVCLHRYPRSQIEVHLVVLENGG 153
>gi|291237650|ref|XP_002738745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 273
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 6/134 (4%)
Query: 21 TRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP 80
T K P + + D R D R + RP F R G +++A GSAY E +TKV +V+GP
Sbjct: 23 TEKDNPDLVND---DGTRHDGRKPNDIRPIFLRCGIISNAKGSAYIETKDTKVTCAVYGP 79
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPK 137
R+ + + G L C+ + TF+ R Q S+ KD S ++ +A+E A+ LE +P+
Sbjct: 80 RQVVRREDFKLTGTLTCDFKFATFSCQKRQQHMQSSNEKDLSLIVLQAMEPAVCLEKYPR 139
Query: 138 TTVDVFALVLESGG 151
+D+F VL++GG
Sbjct: 140 AQIDIFITVLQNGG 153
>gi|353241256|emb|CCA73082.1| hypothetical protein PIIN_07036 [Piriformospora indica DSM 11827]
Length = 267
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 10/135 (7%)
Query: 26 PPIFSGSD------VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFG 79
PPIF + D R D R RP F TG V+ A+GSAY E GNTK+ +V+
Sbjct: 19 PPIFIDDERLEPLNSDNKRRDGRASEDLRPIFLTTGLVSQANGSAYIETGNTKIACAVYA 78
Query: 80 PRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFP 136
PR+ K YS+IGRLN V + F++ R + + + ++H++L AI L FP
Sbjct: 79 PRQLKNT-QYSDIGRLNVEVKFAPFSSVRRRAHLRDVEDRTIGQLVHQSLLPAIQLHLFP 137
Query: 137 KTTVDVFALVLESGG 151
K+++DVF V+E+ G
Sbjct: 138 KSSIDVFITVIENDG 152
>gi|392595837|gb|EIW85160.1| ribosomal protein S5 domain 2-like protein [Coniophora puteana
RWD-64-598 SS2]
Length = 259
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSY 101
R RP F +TG ++ A+GSAY E TK+ +++GPR++K + YS GRLN V +
Sbjct: 39 RAASDIRPIFLQTGFISQANGSAYVETAKTKLACAIYGPRQNKASAAYSEHGRLNVEVKF 98
Query: 102 TTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
F+ P R + ++ + + +H+AL ++ LE PK+T+DVF +LES G
Sbjct: 99 APFSYPRRKAPLRDAEDRTIAETIHQALASSVRLELLPKSTIDVFITILESDG 151
>gi|328875321|gb|EGG23686.1| hypothetical protein DFA_05820 [Dictyostelium fasciculatum]
Length = 307
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 9/117 (7%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVS 100
+R Q R F +TG V+ ASGSAY E NTKVI SV GPR S K ++ + + +C +
Sbjct: 54 NRSEEQFRQIFMKTGVVSQASGSAYIEIENTKVICSVHGPRASPKTELFES-AKFSCELK 112
Query: 101 YTTFATPIRGQGSDH------KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ +FA P G+ D+ KD S L +++ GAI LE +PKT +DV+ +VL G
Sbjct: 113 FASFARP--GERIDYMESAKEKDLSINLRQSIIGAIRLEKYPKTVIDVYVMVLNDDG 167
>gi|302691292|ref|XP_003035325.1| hypothetical protein SCHCODRAFT_50397 [Schizophyllum commune H4-8]
gi|300109021|gb|EFJ00423.1| hypothetical protein SCHCODRAFT_50397 [Schizophyllum commune H4-8]
Length = 259
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 10/133 (7%)
Query: 26 PPIFSGSDVDWLRPDS----RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR 81
PP++ DV +P + RG RP F R G ++ A+GSAY E K+ +V+GPR
Sbjct: 19 PPVYDDEDVP--QPSTTRSGRGELDIRPIFLRPGLISQANGSAYIEADKIKIACAVYGPR 76
Query: 82 ESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKT 138
++K + YS GRLN V Y +AT R + ++ + +H+AL ++ LE PK+
Sbjct: 77 QNKN-VAYSEQGRLNVEVKYAPYATARRKAPLRDAEDRSIGVAIHQALLASVRLELLPKS 135
Query: 139 TVDVFALVLESGG 151
TVD+F +++E+ G
Sbjct: 136 TVDIFLVIIEADG 148
>gi|395333563|gb|EJF65940.1| mRNA transport regulator 3 [Dichomitus squalens LYAD-421 SS1]
Length = 261
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 14/136 (10%)
Query: 27 PIFSGSDVDWLR------PDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP 80
PIF + D R RG RP F + G +N A+GSAY E TK+ +V+GP
Sbjct: 20 PIFDSDEEDETRWKPGKPRKGRGARDIRPIFLKAGLINQANGSAYIETERTKIACAVYGP 79
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFA-----TPIRGQGSDHKDFSSMLHKALEGAIILETF 135
R+S K +Y+ GRLN V + F+ PIR ++ + + + +AL A+ LE
Sbjct: 80 RQS-KTTVYNEKGRLNVEVKFAPFSCKRRRVPIR--DAEDRSVAVQIQQALVSAVRLELL 136
Query: 136 PKTTVDVFALVLESGG 151
PK+T+D+F +V+E+ G
Sbjct: 137 PKSTIDIFIIVIENDG 152
>gi|328793187|ref|XP_623498.2| PREDICTED: exosome complex exonuclease MTR3-like isoform 1 [Apis
mellifera]
Length = 270
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+R D R ++ R F +TG V+ A GSAY E GNTKV+ SVF PRE Y + G +
Sbjct: 36 IRNDKRSNNEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPRELSNRNGYCSQGEIY 95
Query: 97 CNVSYTTFATP---IRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C + F+ I Q ++ K +S +L +ALE A FP VDV+A+VL++ G
Sbjct: 96 CEFKFAPFSCQKRKIHQQDAEEKQYSLILQRALEPA---HEFPNFQVDVYAMVLDNAG 150
>gi|91087143|ref|XP_975288.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit
Rrp41-like protein [Tribolium castaneum]
Length = 282
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + R F +TG V+ A GSAY E TKVIVSVF PRE YS+ G + C
Sbjct: 42 RADGRTSTEHRKIFLKTGVVSQAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGEIYC 101
Query: 98 NVSYTTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ F+ R Q ++ + FS+++ +ALE A+ FP VD++A+VL + G
Sbjct: 102 EFKFAPFSCHKRRLHQQDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYAMVLHNDG 158
>gi|348674314|gb|EGZ14133.1| hypothetical protein PHYSODRAFT_512336 [Phytophthora sojae]
Length = 252
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 74/132 (56%), Gaps = 7/132 (5%)
Query: 27 PIFSGSDVDWLRPD-SRGF-HQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
P+ + D R D +RG + R F + GAV+ A+GSAY E G T+V+ +V+GPR
Sbjct: 15 PVPADDDAPMERLDKTRGSSDEMRRPFMQLGAVSGAAGSAYVEMGRTRVVCAVYGPRTDT 74
Query: 85 KAMM-YSNIGRLNCNVSYTTFATPI----RGQGSDHKDFSSMLHKALEGAIILETFPKTT 139
+A +S G+L C+V Y FA + RGQ D + S+++ +AL A++L PK
Sbjct: 75 RARREFSKDGQLVCDVKYAPFADKLTRRERGQDPDEMELSAIVEEALAPAVMLHKLPKCI 134
Query: 140 VDVFALVLESGG 151
V VF VLE G
Sbjct: 135 VSVFVTVLEDEG 146
>gi|158300785|ref|XP_552338.3| AGAP011906-PA [Anopheles gambiae str. PEST]
gi|157013328|gb|EAL38841.3| AGAP011906-PA [Anopheles gambiae str. PEST]
Length = 308
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D R D R + R + + G V++A GSAY E GNTKVIVSVF PRE K + +G
Sbjct: 40 DGKRKDGRRLQESRKYYAKIGVVSTAKGSAYVELGNTKVIVSVFDPREIPKQNKFCELGE 99
Query: 95 LNCNVSYTTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
L C++ ++ FA +R + + ++ L AL ++ FP +DVFA VLE G
Sbjct: 100 LFCDLKFSPFAPAVRKTHQTDARERSMTAALTSALNPSVCRHLFPNLQIDVFANVLEDDG 159
>gi|332376931|gb|AEE63605.1| unknown [Dendroctonus ponderosae]
Length = 269
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
R + +TG + A GSAY E G+TKVIVSVF PRE + Y G + C Y F+
Sbjct: 47 RKIYLQTGVITQAKGSAYIEIGDTKVIVSVFDPREIPNRIDYGLKGEVYCEFKYAPFSCK 106
Query: 108 IR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
R Q ++ K S ++ KALE + L P VDV+A+VLE G
Sbjct: 107 KRMMHQQNNEEKQSSDIMRKALESTVCLHELPNFQVDVYAMVLEEDG 153
>gi|301099917|ref|XP_002899049.1| exosome complex exonuclease MTR3-like protein [Phytophthora
infestans T30-4]
gi|262104361|gb|EEY62413.1| exosome complex exonuclease MTR3-like protein [Phytophthora
infestans T30-4]
Length = 252
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMM-YSNIGRLNCNVSYTTF 104
+ R F + GAV+ A+GSAY E G T+V+ +V+GPR +A +S G+L C+V Y F
Sbjct: 36 EMRRPFMQLGAVSGAAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQLVCDVKYAPF 95
Query: 105 ATPI----RGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
A + RGQ D + S+++ +AL A++L PK + VF +LE G
Sbjct: 96 ADKLTRRERGQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDG 146
>gi|213513832|ref|NP_001134673.1| Exosome complex exonuclease MTR3 [Salmo salar]
gi|209735138|gb|ACI68438.1| Exosome complex exonuclease MTR3 [Salmo salar]
Length = 277
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNV 99
RG R F R G ++ A GSAY E GNTK+I V+GPRE+ +K GRL ++
Sbjct: 41 QRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPRETERKDETDMKSGRLITDM 100
Query: 100 SYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ F+ RG QGSD KD S ML ++L + L+ +P++ ++V +VLE+ G
Sbjct: 101 RFAPFSCRERGSWIQGSDEKDLSLMLLESLRPGVCLQKYPRSQIEVNVMVLENDG 155
>gi|336367598|gb|EGN95942.1| hypothetical protein SERLA73DRAFT_185379 [Serpula lacrymans var.
lacrymans S7.3]
Length = 260
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 10/135 (7%)
Query: 26 PPIFSGSDVDWL-----RP-DSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFG 79
PPIF + D L +P + R RP F + G +N A+GSAY E TK+ +V+G
Sbjct: 18 PPIFEEEEEDTLSWNIAKPREGRSPQDIRPIFLQPGLINQANGSAYIETDKTKIACAVYG 77
Query: 80 PRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFP 136
PR+SK N GRLN V ++ F+ R + ++ + + +H+A+ ++ LE P
Sbjct: 78 PRQSKTTTFSEN-GRLNVEVKFSPFSCARRKAPLRDAEDRSLAVSIHQAVLSSVRLELLP 136
Query: 137 KTTVDVFALVLESGG 151
K+T+DVF ++E+ G
Sbjct: 137 KSTIDVFITIIENDG 151
>gi|242025392|ref|XP_002433108.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212518649|gb|EEB20370.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 278
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D + +R D R F R + +TG V A GSAY E NTKV+VSVF PRE + ++
Sbjct: 37 DNNKIRKDGRTFEDQRKIYMKTGVVTQAKGSAYLELNNTKVLVSVFEPREIPRLSEFTPN 96
Query: 93 GRLNCNVSYTTF-ATPIRGQGSD--HKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
G + C + F +G D KD S +L ++LE A+ FP VDV+AL+L++
Sbjct: 97 GEIYCEFKFAPFYGLERKGHIMDLEEKDLSIILKRSLEPAVCRHEFPNFQVDVYALLLDN 156
Query: 150 GG 151
G
Sbjct: 157 DG 158
>gi|390597939|gb|EIN07338.1| ribosomal protein S5 domain 2-like protein [Punctularia
strigosozonata HHB-11173 SS5]
Length = 266
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 70/115 (60%), Gaps = 4/115 (3%)
Query: 40 DSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNV 99
+ RG RP F + G ++ A+GSAY E TK++ +V+GPR+S K+ YS G+LN V
Sbjct: 41 NGRGASDIRPIFLKAGLISQANGSAYIETERTKLVCAVYGPRQS-KSTSYSEKGKLNVEV 99
Query: 100 SYTTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ F+ R + ++ + + ++ ++L A+ LE FPK+T+D+F ++E+ G
Sbjct: 100 KFAPFSCTRRRVPNRDAEDRPIAMLIQRSLNAAVRLELFPKSTIDIFITIIENDG 154
>gi|225715750|gb|ACO13721.1| Exosome complex exonuclease MTR3 [Esox lucius]
Length = 277
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNV 99
RG R F R G ++ A GSAY E GNTK+I V+GPRE +K GRL ++
Sbjct: 41 QRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPREMERKDETDMKSGRLMTDM 100
Query: 100 SYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ F+ RG QGSD KD S ML ++L + L +P++ ++V +VLE+ G
Sbjct: 101 RFAPFSCRERGSWIQGSDEKDLSLMLLESLRPGVCLHKYPRSQIEVNVMVLENDG 155
>gi|299753339|ref|XP_001833208.2| mRNA transport regulator 3 [Coprinopsis cinerea okayama7#130]
gi|298410256|gb|EAU88481.2| mRNA transport regulator 3 [Coprinopsis cinerea okayama7#130]
Length = 259
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
RP F + G + A+GSAY E G TK+ +++GPR+SK + + + GRLN + + F+ P
Sbjct: 47 RPIFLQPGLIEQANGSAYIETGKTKIACAIYGPRQSKN-VAFHDKGRLNVELKFAPFSCP 105
Query: 108 IRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
R + ++ + + +H+A+ ++ LET PK+TVDVF VLE G
Sbjct: 106 KRRAPIRDAEDRSIAMAIHQAILPSVRLETLPKSTVDVFITVLEEDG 152
>gi|170067610|ref|XP_001868550.1| mRNA transport regulator 3 [Culex quinquefasciatus]
gi|167863714|gb|EDS27097.1| mRNA transport regulator 3 [Culex quinquefasciatus]
Length = 173
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%)
Query: 24 TRPPIFSGSDVDWLRPDSRGFHQC-------RPAFFRTGAVNSASGSAYAEFGNTKVIVS 76
TR F D L P + G +C R F + G V++A GSAY E GNTKVIVS
Sbjct: 23 TRDKAFQDRLEDVLDPTT-GNRKCNRQDTESRKYFMKLGVVSTAKGSAYLELGNTKVIVS 81
Query: 77 VFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALEGAIILE 133
VF PRE K + +G L C++ ++ FA R ++ + ++ + KAL+ +
Sbjct: 82 VFDPREIPKQNTFRELGELYCDLKFSPFACVHRKNPQTDAEERSLAAAMTKALQPVVCRH 141
Query: 134 TFPKTTVDVFALVLESGG 151
FP +D+FA VLE G
Sbjct: 142 LFPNFQIDIFANVLEDDG 159
>gi|260782066|ref|XP_002586113.1| hypothetical protein BRAFLDRAFT_109996 [Branchiostoma floridae]
gi|229271204|gb|EEN42124.1| hypothetical protein BRAFLDRAFT_109996 [Branchiostoma floridae]
Length = 153
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG- 110
G V+ A+GSAY E G TKVI +V+GPRE + ++ GRL C + + TFA R
Sbjct: 12 LNAGVVSQATGSAYIEMGQTKVIAAVYGPREIARREEFTMKGRLCCELKFATFACRRRRQ 71
Query: 111 --QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
Q + KD + ++ +ALE A+ L+ FPK+ VDV+ VL+ G
Sbjct: 72 HIQDNQEKDGALIVLQALEPAVCLDRFPKSQVDVYITVLQDDG 114
>gi|392566799|gb|EIW59974.1| mRNA transport regulator 3 [Trametes versicolor FP-101664 SS1]
Length = 261
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 14/136 (10%)
Query: 27 PIFSGSDVDWLRPDS------RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP 80
PIF D R + R RP + + G +N A+GSAY E TK+ +V+GP
Sbjct: 20 PIFEADDEQETRWKAGTPRKGRAARDIRPIYLKAGLINQANGSAYIETERTKIACAVYGP 79
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFA-----TPIRGQGSDHKDFSSMLHKALEGAIILETF 135
R+S K +Y+ GRLN V + F+ PIR ++ + + + +AL A+ LE
Sbjct: 80 RQS-KTTVYNEKGRLNVEVKFAPFSCTKRRVPIR--DAEDRSVAVQIQQALASAVRLELL 136
Query: 136 PKTTVDVFALVLESGG 151
PK+T+D+F V+E+ G
Sbjct: 137 PKSTLDIFVTVIENDG 152
>gi|357625820|gb|EHJ76127.1| mRNA transport regulator 3 [Danaus plexippus]
Length = 306
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D + R R + R F RTG ++ A GS+Y E TKV SVF PRE YS +
Sbjct: 37 DENGRRKGGREMDEARTLFARTGMISQAKGSSYIELKRTKVACSVFDPREIVHQNEYSTL 96
Query: 93 GRLNCNVSYTTFATPIRGQ------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
G+L C V Y F+ RG+ SD + S L KALE A+ FP +D+F +
Sbjct: 97 GQLYCEVKYAPFSC--RGERKALVPDSDERALSVALKKALEPAVCRHLFPNYQIDIFIYI 154
Query: 147 LESGG 151
LE+ G
Sbjct: 155 LENDG 159
>gi|66824695|ref|XP_645702.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
gi|60473889|gb|EAL71828.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
Length = 217
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG- 110
+ G V+ SGS+Y E NTKV+ ++ GPR ++K ++ +LNC + YTTF++
Sbjct: 1 MKIGVVSQGSGSSYVEMENTKVLCTIHGPRATQKTELFET-AKLNCELKYTTFSSTTEKI 59
Query: 111 ---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ S KD S ++ +++ G+I LE +PKT +D++ LVL G
Sbjct: 60 DYVENSKEKDLSLLISQSIIGSIRLEKYPKTAIDIYILVLNDDG 103
>gi|260785852|ref|XP_002587974.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
gi|229273129|gb|EEN43985.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
Length = 1444
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG- 110
G V+ A+GSAY E G TKVI +V+GPRE + ++ GRL C + + TFA R
Sbjct: 1208 LHAGVVSQATGSAYIEMGQTKVIAAVYGPREIARREEFTMKGRLCCELKFATFACRRRRQ 1267
Query: 111 --QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
Q + KD + ++ +ALE A+ L+ FPK+ VDV+ VL+ G
Sbjct: 1268 HIQDNQEKDGALIVLQALEPAVCLDRFPKSQVDVYITVLQDDG 1310
>gi|408382267|ref|ZP_11179812.1| exosome complex exonuclease Rrp41 [Methanobacterium formicicum DSM
3637]
gi|407814923|gb|EKF85545.1| exosome complex exonuclease Rrp41 [Methanobacterium formicicum DSM
3637]
Length = 249
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
RPD R F + RP G + A GSAY E G+ KV+ +V+GPRE + ++ N+ L
Sbjct: 26 RPDGRAFDELRPLKIEAGVLERADGSAYVEIGDNKVLAAVYGPRELHVRRLLKPNMAILR 85
Query: 97 CNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C + F+ R + G D + + S + +AL A+ LE FP++T+D+F V+++ G
Sbjct: 86 CRYNMAPFSVDDRKRPGPDRRSVEISKITTEALNPAVFLEKFPRSTIDIFIEVIQAEG 143
>gi|170087298|ref|XP_001874872.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650072|gb|EDR14313.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 255
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 79/141 (56%), Gaps = 8/141 (5%)
Query: 18 IDPTRKTRPPIFSGSDV-DW---LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV 73
I+ ++ PPIF + W + +R RP F + G +N A+GSAY E NTK+
Sbjct: 10 INGPEESNPPIFEDEETPTWNVGMPRRNRASVDIRPIFLQPGLINQATGSAYIETQNTKI 69
Query: 74 IVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAI 130
+VFGPR++K + ++ GRLN +V + F+ R + ++ + + +H+A+ ++
Sbjct: 70 ACAVFGPRQAKN-VAFNEKGRLNVDVKFAPFSCDRRRAPMRDAEDRSIAMAIHQAISSSV 128
Query: 131 ILETFPKTTVDVFALVLESGG 151
L+ PK+ +D+F ++ES G
Sbjct: 129 RLDVLPKSVIDIFITIVESDG 149
>gi|328773049|gb|EGF83086.1| hypothetical protein BATDEDRAFT_84610 [Batrachochytrium
dendrobatidis JAM81]
Length = 253
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 8/125 (6%)
Query: 30 SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMY 89
+G D RPD Q RP + + G + A+GSAY E GN KVI +V+GPR+S +
Sbjct: 28 TGQRADKRRPD-----QIRPIYTKAGTIPQANGSAYIETGNLKVICAVYGPRQSSSRQLS 82
Query: 90 SNIGRLNCNVSYTTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
S+ G L C+ + F+ R + K+FS +L +AL +I LE +PK T+ VF +V
Sbjct: 83 SSTGTLQCDFKFAPFSGEKRKGYAKDDQEKEFSMVLEQALTPSIRLENYPKFTIQVFVIV 142
Query: 147 LESGG 151
LE+ G
Sbjct: 143 LENDG 147
>gi|388857757|emb|CCF48651.1| uncharacterized protein [Ustilago hordei]
Length = 309
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD+R + + RP F +T V SASGS+Y E G+ K+ SVFGPR+ K YS LN
Sbjct: 39 RPDNRSYAELRPIFLQTNLVPSASGSSYVEIGDLKLACSVFGPRQV-KGRQYSGKAELNV 97
Query: 98 NVSYTTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V + F++ R G+ ++ S++LH+AL ++ L+ PK ++D+ +VL++ G
Sbjct: 98 EVKFAPFSSRRRRQPGRTTESAHLSNLLHQALLPSLRLDLLPKASLDIHIMVLQTDG 154
>gi|410721458|ref|ZP_11360793.1| archaeal exosome-like complex exonuclease 1 [Methanobacterium sp.
Maddingley MBC34]
gi|410598915|gb|EKQ53478.1| archaeal exosome-like complex exonuclease 1 [Methanobacterium sp.
Maddingley MBC34]
Length = 249
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
RPD R F + RP G + A GS+Y E G+ KV+ +V+GPRE + ++ N+ L
Sbjct: 26 RPDGRAFDELRPLKIEAGVLERADGSSYVEIGDNKVLAAVYGPRELHVRRLLKPNMAILR 85
Query: 97 CNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C + F+ R + G D + + S + +AL A+ LE FP++T+D+F VL++ G
Sbjct: 86 CRYNMAPFSVDDRKRPGPDRRSVEISKITTEALNPAVFLEKFPRSTIDIFIEVLQAEG 143
>gi|402590947|gb|EJW84877.1| hypothetical protein WUBG_04212 [Wuchereria bancrofti]
Length = 250
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 70/119 (58%), Gaps = 5/119 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R HQ R ++ G + A GSAY E GNTKV+ +V+GP E K ++ + + +N
Sbjct: 10 RQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCIIN 69
Query: 97 CNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R + D + +F+ ++ KA E AI+ E +P++ +DVF +L++ G
Sbjct: 70 CQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEAAILTENYPRSQIDVFCELLQADG 128
>gi|198434569|ref|XP_002126010.1| PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA
transport regulator 3 homolog) (Exosome component 6)
[Ciona intestinalis]
Length = 276
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-N 91
D + R D R Q R F + G + A GSAY E TKVI SV+GP++ + + N
Sbjct: 30 DDEEKRADGRYVTQPRDVFLQCGVITQAKGSAYFEMNKTKVICSVYGPKDIEMREEFQIN 89
Query: 92 IGRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G+L C + Y +++P G G+ + S +L +A+ + L+ +PK+ +DV+ +VLE
Sbjct: 90 KGKLKCELKYAPYSSPKHGDHIPGASDVEKSDILLEAISSGVCLQRYPKSQIDVYVIVLE 149
Query: 149 SGG 151
G
Sbjct: 150 DDG 152
>gi|304314830|ref|YP_003849977.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302588289|gb|ADL58664.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 231
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
+R D R F + RP G + A GS+Y EFG K++V+V+GPRE++ + + + +
Sbjct: 7 VREDGRAFDELRPLRIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 66
Query: 96 NCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C + F+ R + G D + + S + +AL A+ILE FP++ +DVF VLE+ G
Sbjct: 67 RCRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEG 125
>gi|15678710|ref|NP_275826.1| exosome complex exonuclease Rrp41 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336573|sp|O26779.1|ECX1_METTH RecName: Full=Probable exosome complex exonuclease 1
gi|295321490|pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321492|pdb|2WNR|D Chain D, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321494|pdb|2WNR|F Chain F, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|2621768|gb|AAB85188.1| ribonuclease PH [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 240
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
+R D R F + RP G + A GS+Y EFG K++V+V+GPRE++ + + + +
Sbjct: 16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75
Query: 96 NCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C + F+ R + G D + + S + +AL A+ILE FP++ +DVF VLE+ G
Sbjct: 76 RCRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEG 134
>gi|170586916|ref|XP_001898225.1| Putative exosome complex exonuclease RRP41 [Brugia malayi]
gi|158594620|gb|EDP33204.1| Putative exosome complex exonuclease RRP41, putative [Brugia
malayi]
Length = 249
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 70/119 (58%), Gaps = 5/119 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R HQ R ++ G + A GSAY E GNTKV+ +V+GP E K ++ + + +N
Sbjct: 10 RQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCIIN 69
Query: 97 CNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R + D + +F+ ++ KA E AI+ E +P++ +DVF +L++ G
Sbjct: 70 CQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEEAILTENYPRSQIDVFCELLQADG 128
>gi|196014350|ref|XP_002117034.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
gi|190580256|gb|EDV20340.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
Length = 240
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 8/111 (7%)
Query: 49 PAFF-----RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTT 103
P F+ RTGAV+ A GSAY E NTK+I +V+GPRE K ++ + C + + T
Sbjct: 8 PKFYDRLVCRTGAVSQAVGSAYIELRNTKIICAVYGPREVAKKQEFNIQATVACELKFAT 67
Query: 104 FATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
F+ R Q S K++S ++ +AL+ + L+ +PK+ +D+F VL++ G
Sbjct: 68 FSCRRRRRHIQDSQEKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQNDG 118
>gi|429216660|ref|YP_007174650.1| archaeal exosome-like complex exonuclease 1 [Caldisphaera
lagunensis DSM 15908]
gi|429133189|gb|AFZ70201.1| archaeal exosome-like complex exonuclease 1 [Caldisphaera
lagunensis DSM 15908]
Length = 243
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D D R D R + RP + G + +A GSA E+G T+V+ +V+GP+ES+K+M+ +
Sbjct: 12 DDDGKRLDGRKPDEVRPIKMQVGVLTNADGSALVEYGLTRVLAAVYGPKESQKSMLLPDR 71
Query: 93 GRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
L F+T R + + + S +L ++LE +I E FP+T++DVF VL+S
Sbjct: 72 ATLRVRYHMAPFSTEERKNPAPTRRELELSKVLRESLEPVVITEYFPRTSIDVFIEVLQS 131
Query: 150 GG 151
G
Sbjct: 132 DG 133
>gi|405978444|gb|EKC42833.1| Exosome complex exonuclease MTR3 [Crassostrea gigas]
Length = 426
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 16/144 (11%)
Query: 18 IDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPA-------FFRTGAVNSASGSAYAEFGN 70
+ R+ PPI S R D R + + A + G ++ A GSAY E
Sbjct: 168 VQRKRELFPPIKSS------RLDPRLEQRIQAANQKGSNKILKAGIISQARGSAYIEQNE 221
Query: 71 TKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIR---GQGSDHKDFSSMLHKALE 127
TKV+ +V+GPRE K +S G+L C + TF+ +R Q ++ +D+S L ALE
Sbjct: 222 TKVMCAVYGPREVTKKEEFSMKGQLTCEFKFATFSCRVRRQYQQDNEERDYSCQLQDALE 281
Query: 128 GAIILETFPKTTVDVFALVLESGG 151
A+ ++ FPK V+V+ VL++ G
Sbjct: 282 PAVRMDKFPKAQVNVYVTVLQNDG 305
>gi|343425437|emb|CBQ68972.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 303
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R + RP F +T V SASGS+Y E G+ K+ SVFGPR+ K YS LN
Sbjct: 41 RPDKRAYADLRPIFLQTNLVPSASGSSYVEIGDLKLACSVFGPRQV-KGRQYSGKAELNV 99
Query: 98 NVSYTTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V + F++ R G+ ++ S +LH+AL ++ L+ PK ++D+ +VL++ G
Sbjct: 100 EVKFAPFSSRRRRKPGKTTESAHLSGLLHQALLPSLRLDLLPKASLDIHIMVLQTDG 156
>gi|94469342|gb|ABF18520.1| exosomal 3'-5' exoribonuclease complex subunit Rrp41-like protein
[Aedes aegypti]
Length = 307
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 8/137 (5%)
Query: 23 KTRPPIFSGSDVDWLRPDS-----RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
K R F D P R ++ R F + G V++A GS Y E GNTKVIVSV
Sbjct: 22 KNRDKTFEDRVADVFEPSGKRKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSV 81
Query: 78 FGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALEGAIILET 134
F PRE K + +G L C+ ++ FA R ++ + ++ + KAL+ +
Sbjct: 82 FDPREIPKQNKFRALGELYCDFKFSPFACIHRKNPQTDAEERSLAAAMTKALQPVVCRHL 141
Query: 135 FPKTTVDVFALVLESGG 151
FP +D+FA VLE G
Sbjct: 142 FPNFQIDIFANVLEDDG 158
>gi|118576719|ref|YP_876462.1| RNase PH [Cenarchaeum symbiosum A]
gi|259645399|sp|A0RXU1.1|ECX1_CENSY RecName: Full=Probable exosome complex exonuclease 1
gi|118195240|gb|ABK78158.1| RNase PH [Cenarchaeum symbiosum A]
Length = 243
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R + R G +N+A+GSAY EFG+ K++ +FGPR+ K M+ +
Sbjct: 12 DENGIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTE 71
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L C + F+ R + + + + S ++ +ALE +++LE FP+T VDVF VL+
Sbjct: 72 TGILRCRYHMSPFSVSERKKPAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVLQ 131
Query: 149 SGG 151
+ G
Sbjct: 132 ADG 134
>gi|157114057|ref|XP_001657962.1| hypothetical protein AaeL_AAEL006697 [Aedes aegypti]
gi|108877466|gb|EAT41691.1| AAEL006697-PA [Aedes aegypti]
Length = 307
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 8/137 (5%)
Query: 23 KTRPPIFSGSDVDWLRPDS-----RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
K R F D P R ++ R F + G V++A GS Y E GNTKVIVSV
Sbjct: 22 KNRDKTFEDRVADVFEPSGKRKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSV 81
Query: 78 FGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALEGAIILET 134
F PRE K + +G L C+ ++ FA R ++ + ++ + KAL+ +
Sbjct: 82 FDPREIPKQNKFRALGELYCDFKFSPFACIHRKNPQTDAEERSLAAAMTKALQPVVCRHL 141
Query: 135 FPKTTVDVFALVLESGG 151
FP +D+FA VLE G
Sbjct: 142 FPNFQIDIFANVLEDDG 158
>gi|357622504|gb|EHJ73955.1| mRNA transport regulator 3 [Danaus plexippus]
Length = 548
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R R + R F RTG ++ A GS+Y E TKV SVF PRE YS +G+L C
Sbjct: 42 RKGGREMDEARTLFARTGMISQAKGSSYIELKRTKVACSVFDPREIVHQNEYSTLGQLYC 101
Query: 98 NVSYTTFATPIRGQ------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V Y F+ RG+ SD + S L KALE A+ FP +D+F +LE+ G
Sbjct: 102 EVKYAPFSC--RGERKALVPDSDERALSVALKKALEPAVCRHLFPNYQIDIFIYILENDG 159
>gi|333986695|ref|YP_004519302.1| exosome complex exonuclease 1 [Methanobacterium sp. SWAN-1]
gi|333824839|gb|AEG17501.1| exosome complex exonuclease 1 [Methanobacterium sp. SWAN-1]
Length = 242
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R F + RP G + A GSAY E G KV+ +V+GPRE + +M N L
Sbjct: 19 RADGRAFDELRPLKIEAGVLERADGSAYVEMGGNKVLAAVYGPRELHIRRIMMPNKAVLR 78
Query: 97 CNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C + F+ R + G D + + S + +AL A+ LE FP++T+DVF VLE+ G
Sbjct: 79 CKYNMAPFSVDDRKRPGPDRRSVEISKITSEALTPAVFLEKFPRSTIDVFIEVLEAEG 136
>gi|288869794|ref|ZP_06409500.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
gi|288860272|gb|EFC92570.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
Length = 234
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ +R D R +++ RP G + A GSAY E G K++V+V+GPRES + ++ N G
Sbjct: 4 EMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTG 63
Query: 94 RLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C + F+ R + G D + + S + AL A++LE +P++ VD++ V+E+
Sbjct: 64 VIRCRYNMAPFSVDDRKRPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAE 123
Query: 151 G 151
G
Sbjct: 124 G 124
>gi|270009587|gb|EFA06035.1| hypothetical protein TcasGA2_TC008865 [Tribolium castaneum]
Length = 300
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIR-- 109
+TG V+ A GSAY E TKVIVSVF PRE YS+ G + C + F+ R
Sbjct: 74 LKTGVVSQAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGEIYCEFKFAPFSCHKRRL 133
Query: 110 -GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
Q ++ + FS+++ +ALE A+ FP VD++A+VL + G
Sbjct: 134 HQQDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYAMVLHNDG 176
>gi|213402699|ref|XP_002172122.1| conserved hypothetical protein [Schizosaccharomyces japonicus
yFS275]
gi|212000169|gb|EEB05829.1| conserved hypothetical protein [Schizosaccharomyces japonicus
yFS275]
Length = 251
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Query: 49 PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPI 108
PA G A+G+AY E GN K+ SVFGPR +K + +S I +L C + ++ FA +
Sbjct: 12 PAVVYLGWTTKANGNAYLESGNIKIACSVFGPRPTKTSSFHS-IAKLTCELKFSPFAQTV 70
Query: 109 RG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
R Q + +DFS + ++L +I+L +PK+++DV+ +LES G
Sbjct: 71 RKSNVQDINERDFSQHIERSLAPSIMLHLYPKSSIDVYIQILESDG 116
>gi|222444527|ref|ZP_03607042.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
DSM 2375]
gi|222434092|gb|EEE41257.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2375]
Length = 233
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ +R D R +++ RP G + A GSAY E G K++V+V+GPRES + ++ N G
Sbjct: 3 EMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTG 62
Query: 94 RLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C + F+ R + G D + + S + AL A++LE +P++ VD++ V+E+
Sbjct: 63 VIRCRYNMAPFSVDDRKRPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAE 122
Query: 151 G 151
G
Sbjct: 123 G 123
>gi|71020931|ref|XP_760696.1| hypothetical protein UM04549.1 [Ustilago maydis 521]
gi|46100124|gb|EAK85357.1| hypothetical protein UM04549.1 [Ustilago maydis 521]
Length = 297
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R + Q RP F +T V SASGS+Y E G+ K+ SVFGPR+ K YS LN
Sbjct: 38 RPDQRSYSQLRPIFLQTHLVPSASGSSYVEIGDLKLACSVFGPRQV-KGRQYSGKAELNV 96
Query: 98 NVSYTTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V + F++ R G+ ++ S +LH+AL ++ L+ PK ++D+ +VL++ G
Sbjct: 97 EVKFAPFSSRRRRRPGKTTESAHLSGLLHQALLPSLRLDLLPKASLDIHIMVLQTDG 153
>gi|409096213|ref|ZP_11216237.1| exosome complex exonuclease Rrp41 [Thermococcus zilligii AN1]
Length = 249
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-S 83
RP D + R D R H+ R G + +A GSAY E+GN K+I +V+GPRE
Sbjct: 4 RPEGLKLIDENGKRIDGRKKHELRQIRMEVGVLKNADGSAYIEWGNNKIIAAVYGPREIH 63
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + L + F+ R + G D + + S ++H AL+ A+ILE FP+T +
Sbjct: 64 PKHLQRPETAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIHGALQPALILEMFPRTVI 123
Query: 141 DVFALVLES 149
DVF VL++
Sbjct: 124 DVFIEVLQA 132
>gi|148642302|ref|YP_001272815.1| exosome complex exonuclease Rrp41 [Methanobrevibacter smithii ATCC
35061]
gi|148551319|gb|ABQ86447.1| ribonuclease PH, Rph [Methanobrevibacter smithii ATCC 35061]
Length = 234
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ +R D R +++ RP G + A GSAY E G K++V+V+GPRES + ++ N G
Sbjct: 4 EMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTG 63
Query: 94 RLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C + F+ R + G D + + S + AL A++LE +P++ VD++ V+E+
Sbjct: 64 VIRCRYNMAPFSVDDRKRPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAE 123
Query: 151 G 151
G
Sbjct: 124 G 124
>gi|321469683|gb|EFX80662.1| hypothetical protein DAPPUDRAFT_50975 [Daphnia pulex]
Length = 227
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPI-RG 110
+TG ++ A GSAY E GNTK++ V+GPRE +K +S G+L C + F+ RG
Sbjct: 1 LKTGIISQAKGSAYIEQGNTKLVCGVYGPREVQKKSDFSLNGQLFCEFKFAPFSCQKRRG 60
Query: 111 QGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
D+++ S +L +ALE A+ L FPK V+V +V+E+ G
Sbjct: 61 HQQDNEELVLSGLLREALEAAVCLHKFPKAQVEVNVMVIENDG 103
>gi|408404985|ref|YP_006862968.1| exosome complex exonuclease [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408365581|gb|AFU59311.1| putative exosome complex exonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 247
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + R D RG + R G V +A GSA+ EFG K++ +V+GPRE K M S+
Sbjct: 9 DENGKRTDGRGIDELREVKITVGTVKNADGSAFIEFGKNKILAAVYGPREVHPKHMAQSD 68
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L C + F+T R + + + S ++ +ALE A++LE +P+ +DVF VL+
Sbjct: 69 RCVLRCRYHMSPFSTDTRKNPAPSRREVEISKVMREALEPALMLEDYPRAAIDVFVEVLQ 128
Query: 149 SGG 151
S G
Sbjct: 129 SDG 131
>gi|325185608|emb|CCA20090.1| exosome complex exonuclease MTR3like protein putativ [Albugo
laibachii Nc14]
Length = 251
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Query: 37 LRPDS--RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA-MMYSNIG 93
LR D Q R + + G +++ASGSAY E TKVI +V+GPR + + + G
Sbjct: 21 LRADQTRSSMDQIRATYMQVGVIHNASGSAYVELQGTKVICAVYGPRNNPRGRRKFHEGG 80
Query: 94 RLNCNVSYTTFATPIR----GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+L C+V + FA R GQ D D S ++ KAL AI L+ PK V F ++L+S
Sbjct: 81 QLICDVKFAPFAERNRTRNAGQDPDEIDLSQIVTKALLPAIFLDKLPKCVVSCFVVILQS 140
Query: 150 GG 151
G
Sbjct: 141 DG 142
>gi|393245504|gb|EJD53014.1| ribosomal protein S5 domain 2-like protein [Auricularia delicata
TFB-10046 SS5]
Length = 255
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSY 101
R RP + +TG + A+GSAY E K+ +V+GPR+ K A YS+ G+LN V +
Sbjct: 35 RAPRDIRPIYLQTGLITQANGSAYIETERAKIACAVYGPRQPKNA-AYSDKGKLNVEVKF 93
Query: 102 TTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
FA R + ++ + ++++ +AL A+ LE PK+++D+F +LE+ G
Sbjct: 94 APFACRTRRVPNKDAEDRSIANLVQQALLPAVRLELLPKSSLDIFVTILEADG 146
>gi|312065760|ref|XP_003135946.1| EXOSome component family member [Loa loa]
gi|307768890|gb|EFO28124.1| EXOSome component family member [Loa loa]
Length = 247
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 5/119 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R +Q R ++ G + A GSAY E GNTKV+ +V+GP E K ++ + + +N
Sbjct: 10 RQDGRKPYQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCIIN 69
Query: 97 CNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R + D + +F+ ++ KA E A++ E +P++ +DVF +L++ G
Sbjct: 70 CQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEAAVLTENYPRSQIDVFCELLQADG 128
>gi|391346094|ref|XP_003747314.1| PREDICTED: exosome complex component MTR3-like [Metaseiulus
occidentalis]
Length = 271
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + RP F +G V+ ASGS Y E G+TKV+ +VFGPRE + +S +L C
Sbjct: 34 RKDGRRDEELRPRIFESGLVSDASGSGYVEQGSTKVVAAVFGPREVTRRKEFSLKAQLRC 93
Query: 98 NVSYTTFATPIRGQGSD---HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
++ FATP Q + + +SS L ++L+ + L +PK ++D+ LE+ G
Sbjct: 94 VFTFEPFATPGGRQENISLLEQRYSSWLEESLKPVVQLRRYPKASIDIRVTCLENDG 150
>gi|409046107|gb|EKM55587.1| hypothetical protein PHACADRAFT_161608 [Phanerochaete carnosa
HHB-10118-sp]
Length = 263
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP S G A + G +N A+GSAY E K+ +V+GPR+S ++ YS GRLN
Sbjct: 43 IRPISNGR-----AVLKPGLINQANGSAYIETEKAKIACAVYGPRQS-RSTTYSEKGRLN 96
Query: 97 CNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V +T F+ R + ++ + + +H+AL ++ LE PK+T+D+F +V+E+ G
Sbjct: 97 VEVKFTPFSCQRRRAPMRDAEDRSVAVQIHQALLSSVRLELLPKSTIDIFIIVIENDG 154
>gi|426200127|gb|EKV50051.1| hypothetical protein AGABI2DRAFT_63232 [Agaricus bisporus var.
bisporus H97]
Length = 261
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 8/115 (6%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSY 101
RG RP F + G + A+GSAY E +TK+ +V+GPR+SK + YS G LN V +
Sbjct: 39 RGPLDVRPIFLQPGLITQANGSAYIETEHTKIACAVYGPRQSKN-VSYSESGHLNVEVKF 97
Query: 102 TTFAT-----PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
F+ P+R ++ + + +H+A+ ++ LE PK+T+DVF V+E+ G
Sbjct: 98 APFSCRRRRAPLR--DAEDRTIAIAVHQAIVSSVRLELLPKSTIDVFVTVIEADG 150
>gi|409082295|gb|EKM82653.1| hypothetical protein AGABI1DRAFT_97612 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 261
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 8/115 (6%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSY 101
RG RP F + G + A+GSAY E +TK+ +V+GPR+SK + YS G LN V +
Sbjct: 39 RGPLDVRPIFLQPGLITQANGSAYIETEHTKIACAVYGPRQSKN-VSYSESGHLNVEVKF 97
Query: 102 TTFAT-----PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
F+ P+R ++ + + +H+A+ ++ LE PK+T+DVF V+E+ G
Sbjct: 98 APFSCRRRRAPLR--DAEDRTIAIAVHQAIVSSVRLELLPKSTIDVFVTVIEADG 150
>gi|389748864|gb|EIM90041.1| ribosomal protein S5 domain 2-like protein [Stereum hirsutum
FP-91666 SS1]
Length = 264
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
RP F + G ++ A+GSAY E TK+ +V+GPR+SK YS GRLN V ++ F+
Sbjct: 50 RPIFLKAGLISQANGSAYIEAERTKIACAVYGPRQSKNT-SYSENGRLNVEVKFSPFSCA 108
Query: 108 IRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
R + ++ + + ++ +AL ++ LE PK+ +D+F V+E+ G
Sbjct: 109 TRRAPLRDAEDRSVAVLIQQALTPSVRLELLPKSVIDIFVTVIENDG 155
>gi|290989317|ref|XP_002677284.1| predicted protein [Naegleria gruberi]
gi|284090891|gb|EFC44540.1| predicted protein [Naegleria gruberi]
Length = 248
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ LR D R H+ R F+ + A GSAY E GNT+V+ +V+GPRE K K+ M ++
Sbjct: 11 EGLRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRA 70
Query: 94 RLNCNVSYTTFATPIRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+NC S TF+T R + D + + S ++ + E I+ +P+T +D+F VL++
Sbjct: 71 IINCEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVLQA 130
Query: 150 GG 151
G
Sbjct: 131 DG 132
>gi|347524281|ref|YP_004781851.1| exosome complex exonuclease 1 [Pyrolobus fumarii 1A]
gi|343461163|gb|AEM39599.1| exosome complex exonuclease 1 [Pyrolobus fumarii 1A]
Length = 248
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
+R D R + RP G +++A GSAY EFG T+VI +V+GPRE K M + +
Sbjct: 20 VRHDGRAPDELRPIRMEVGVLSNADGSAYVEFGRTRVIAAVYGPREVHPKHMALPDRALI 79
Query: 96 NCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C F+T R + + + S ++ +ALE + E +P+TT+D+F V+E+ G
Sbjct: 80 RCRYHMAPFSTDERKSPAPTRREIELSKVIREALEPVVFTELYPRTTIDIFIEVIEADG 138
>gi|170067614|ref|XP_001868552.1| exosome component 6 [Culex quinquefasciatus]
gi|167863716|gb|EDS27099.1| exosome component 6 [Culex quinquefasciatus]
Length = 246
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQ 111
+ G V++A GSAY E GNTKVIVSVF PRE K + +G L C++ ++ FA R
Sbjct: 1 MKLGVVSTAKGSAYLELGNTKVIVSVFDPREIPKQNTFRELGELYCDLKFSPFACVHRKN 60
Query: 112 ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
++ + ++ + KAL+ + FP +D+FA VLE G
Sbjct: 61 PQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLEDDG 103
>gi|340344304|ref|ZP_08667436.1| Putative exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519445|gb|EGP93168.1| Putative exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 244
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R + R + G + +A GSAY EFG+ K++V VFGPR+ K M ++
Sbjct: 12 DENGIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTD 71
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S ++ +ALE A++LE FP+T VDVF VL+
Sbjct: 72 TGILRVRYHMEPFSVTERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131
Query: 149 SGG 151
+ G
Sbjct: 132 ADG 134
>gi|329766296|ref|ZP_08257843.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393796026|ref|ZP_10379390.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329137198|gb|EGG41487.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 245
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R + R + G + +A GSAY EFG+ K++V VFGPR+ K M ++
Sbjct: 12 DENGIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTD 71
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S ++ +ALE A++LE FP+T VDVF VL+
Sbjct: 72 TGILRVRYHMEPFSVTERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131
Query: 149 SGG 151
+ G
Sbjct: 132 ADG 134
>gi|324522716|gb|ADY48116.1| Exosome complex exonuclease RRP41 [Ascaris suum]
Length = 249
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLN 96
R D R HQ R ++ G A GSAY E GNTKV+ +V+GP E ++ + +N
Sbjct: 10 RLDGRKPHQIRNINYKLGVYTQADGSAYLEQGNTKVLCAVYGPHEPRQRNRTQEDRCTVN 69
Query: 97 CNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R + D + +F+ ++ KA E AI++E +P +D+F +L++ G
Sbjct: 70 CQYSMATFSTNERKERPRGDRRSMEFARLMEKAFETAILVENYPHAQIDIFCELLQADG 128
>gi|449667396|ref|XP_002164788.2| PREDICTED: exosome complex component MTR3-like [Hydra
magnipapillata]
Length = 212
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 65/103 (63%), Gaps = 2/103 (1%)
Query: 51 FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA--TPI 108
+ + G ++ A+GS+Y E +TK+I +V+GPR++ K +S+ G + C V++ F+ +
Sbjct: 2 YLKAGTIHQANGSSYVETCDTKLICAVYGPRDNPKRHQFSSKGNIFCEVTFAPFSWHERV 61
Query: 109 RGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
Q S K++SS + +A E A+ LE++PK +D++ +LE G
Sbjct: 62 SNQDSLSKEYSSAIVQAFESAVCLESYPKAQIDIYINILEYSG 104
>gi|375082088|ref|ZP_09729158.1| exosome complex exonuclease Rrp41 [Thermococcus litoralis DSM 5473]
gi|374743301|gb|EHR79669.1| exosome complex exonuclease Rrp41 [Thermococcus litoralis DSM 5473]
Length = 247
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
RP D + R D R ++ RP G + SA GSAY E+G K++ +V+GPRE
Sbjct: 4 RPEGLKLIDENGKRLDGRKKYELRPIKMEVGVLKSADGSAYVEWGKNKILAAVYGPREIH 63
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T++
Sbjct: 64 PKHLQKPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPAVILELFPRTSI 123
Query: 141 DVFALVLES 149
DVF VL++
Sbjct: 124 DVFIEVLQA 132
>gi|407464319|ref|YP_006775201.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus sp. AR2]
gi|407047507|gb|AFS82259.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus sp. AR2]
Length = 244
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R + R + G + +A GSAY EFG+ K++V VFGPR+ K M ++
Sbjct: 12 DENGIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTD 71
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S ++ +ALE A++LE FP+T VDVF VL+
Sbjct: 72 TGILRVRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131
Query: 149 SGG 151
+ G
Sbjct: 132 ADG 134
>gi|325959906|ref|YP_004291372.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
gi|325331338|gb|ADZ10400.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
Length = 243
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRLN 96
R D+R F + R G + A GSAY E G KV+ +V+GPRE + +M N L
Sbjct: 19 RADNRAFDELRKMKIEAGVLERADGSAYLEIGGNKVLAAVYGPRELFVRRLMQPNKAVLR 78
Query: 97 CNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C + F+ R + G D + + S + +AL A+ LE FP++T+DVF V+E+ G
Sbjct: 79 CKYNMAPFSVDDRKRPGPDRRSVEISKLASQALTPAVFLEKFPRSTIDVFIEVIEAEG 136
>gi|312137048|ref|YP_004004385.1| ribosomal RNA-processing protein rrp41/ski6 [Methanothermus
fervidus DSM 2088]
gi|311224767|gb|ADP77623.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanothermus
fervidus DSM 2088]
Length = 236
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 72/126 (57%), Gaps = 12/126 (9%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG 93
V+++R D R +++ RP + G + A GS+Y E G+ K++ +V+GPR+ + + I
Sbjct: 8 VEFVRKDGRAYNELRPVKIKAGVLKRADGSSYIELGSNKILAAVYGPRDPQ----ITKIK 63
Query: 94 R-----LNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFAL 145
R + C + F+ R + G D + + S + +AL +IILE FP++++D+F
Sbjct: 64 RPDRAIIRCRYNMAPFSVEERKRPGPDRRSIEISKITAEALAPSIILEKFPRSSIDIFIE 123
Query: 146 VLESGG 151
VLE+ G
Sbjct: 124 VLEADG 129
>gi|299470099|emb|CBN78128.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 270
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 7/121 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR-ESKKAMMYSNIGRLN 96
R D R + R + G V A+GSAY EF +TKVI +V+GP ++ +S G+L
Sbjct: 43 REDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQ 102
Query: 97 CNVSYTTFATP------IRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
C+ SY FA P G+ D ++ S++L + LE +I + K+ V V +VL++
Sbjct: 103 CDFSYAPFAMPGGRRETRGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQAD 162
Query: 151 G 151
G
Sbjct: 163 G 163
>gi|14591333|ref|NP_143411.1| exosome complex exonuclease Rrp41 [Pyrococcus horikoshii OT3]
gi|29336584|sp|O59223.1|ECX1_PYRHO RecName: Full=Probable exosome complex exonuclease 1
gi|3257978|dbj|BAA30661.1| 249aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 249
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-S 83
+P D + R D R ++ RP + G + +A+GSAY E+G K+I +V+GPRE
Sbjct: 4 KPEGLKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELH 63
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T++
Sbjct: 64 SKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTSI 123
Query: 141 DVFALVLES 149
DVF VL++
Sbjct: 124 DVFIEVLQA 132
>gi|194761146|ref|XP_001962793.1| GF15621 [Drosophila ananassae]
gi|190616490|gb|EDV32014.1| GF15621 [Drosophila ananassae]
Length = 249
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K SN +N
Sbjct: 13 LRLDGRRPHELRHIQCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTESNDVIIN 72
Query: 97 CNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R ++F L +AL AI E +P++ +DV+ VL++ G
Sbjct: 73 CQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEVLQADG 131
>gi|167044510|gb|ABZ09185.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG6J21]
Length = 245
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R ++ R + G + +A GSAY EFG K++ VFGPR+ K M +
Sbjct: 12 DENGIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPD 71
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S +L +ALE A+ILE FP+T +DV+ VL+
Sbjct: 72 TGILRVRYHMAPFSVSERKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQ 131
Query: 149 SGG 151
+ G
Sbjct: 132 ADG 134
>gi|126465758|ref|YP_001040867.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
gi|126014581|gb|ABN69959.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
Length = 240
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D LR D R ++ RP G + +A GSAY E+G TKVI +V+GPRE + + +
Sbjct: 10 DGLRHDGRKPNELRPIKMDVGVLKNADGSAYVEYGGTKVIAAVYGPREVYPRHLALPDRA 69
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C F+T R + + + S ++ +ALE + E +P+TT+DVF VL++
Sbjct: 70 LIRCRYHMAPFSTSDRKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQAD 129
Query: 151 G 151
G
Sbjct: 130 G 130
>gi|167044981|gb|ABZ09646.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8G2]
Length = 245
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R ++ R + G + +A GSAY EFG K++ VFGPR+ K M +
Sbjct: 12 DENGIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPD 71
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S +L +ALE A+ILE FP+T +DV+ VL+
Sbjct: 72 TGILRVRYHMEPFSVSERKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQ 131
Query: 149 SGG 151
+ G
Sbjct: 132 ADG 134
>gi|167044148|gb|ABZ08830.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG5E24]
Length = 245
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R ++ R + G + +A GSAY EFG K++ VFGPR+ K M +
Sbjct: 12 DENGIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPD 71
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S +L +ALE A+ILE FP+T +DV+ VL+
Sbjct: 72 TGILRVRYHMEPFSVSERKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQ 131
Query: 149 SGG 151
+ G
Sbjct: 132 ADG 134
>gi|18977940|ref|NP_579297.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus DSM 3638]
gi|397652061|ref|YP_006492642.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus COM1]
gi|29336822|sp|Q8U0L9.1|ECX1_PYRFU RecName: Full=Probable exosome complex exonuclease 1
gi|18893710|gb|AAL81692.1| ribonuclease ph (rph) [Pyrococcus furiosus DSM 3638]
gi|393189652|gb|AFN04350.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus COM1]
Length = 250
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
+P D + R D R ++ RP + G + +A+GSAY E+G K+I +V+GPRE
Sbjct: 4 KPEGLKLIDENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIH 63
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T +
Sbjct: 64 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIRGALEPALILEMFPRTAI 123
Query: 141 DVFALVLES 149
DVF VL++
Sbjct: 124 DVFIEVLQA 132
>gi|386876598|ref|ZP_10118697.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus salaria
BD31]
gi|386805560|gb|EIJ65080.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus salaria
BD31]
Length = 244
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R + R + G + +A GSAY EFG+ K++V VFGPR+ K M ++
Sbjct: 12 DENGIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTD 71
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S ++ +ALE A++L+ FP+T VDVF VL+
Sbjct: 72 TGILRVRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLDKFPRTAVDVFIEVLQ 131
Query: 149 SGG 151
+ G
Sbjct: 132 ADG 134
>gi|393216797|gb|EJD02287.1| ribosomal protein S5 domain 2-like protein [Fomitiporia
mediterranea MF3/22]
Length = 262
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
RP F +TG ++ A+GSAY E TK+ +V+GPR+SK + Y G+L+ V + F+
Sbjct: 49 RPIFLKTGLISQANGSAYIETEKTKIACAVYGPRQSKTS-TYHEKGKLHVEVKFAPFSCA 107
Query: 108 IRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
R + ++ + S ++ ++L AI LE PK+++D+F V+E+ G
Sbjct: 108 KRRAPMRDAEDRSVSILIQQSLTPAIRLELIPKSSIDIFLFVIENDG 154
>gi|389852857|ref|YP_006355091.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. ST04]
gi|388250163|gb|AFK23016.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. ST04]
Length = 249
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
+P D + R D R ++ RP + G + +A+GSAY E+G K+I +V+GPRE
Sbjct: 4 KPEDIKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPREIH 63
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T +
Sbjct: 64 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAI 123
Query: 141 DVFALVLES 149
D+F VL++
Sbjct: 124 DIFIEVLQA 132
>gi|125984746|ref|XP_001356137.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|195161898|ref|XP_002021795.1| GL26697 [Drosophila persimilis]
gi|54644456|gb|EAL33197.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|194103595|gb|EDW25638.1| GL26697 [Drosophila persimilis]
Length = 249
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K +N +N
Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGMKTETNDVIIN 72
Query: 97 CNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TFAT R D K +F L +AL AI E +P++ +D++ VL++ G
Sbjct: 73 CQYSQATFATAERKNRPRGDRKSLEFKMYLEQALSAAIKSELYPRSQIDIYVEVLQADG 131
>gi|288560609|ref|YP_003424095.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
gi|288543319|gb|ADC47203.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
Length = 236
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 29 FSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAM 87
F S+ + LR D R + + RP G + A GSAY E G K++ SV+GPRES + +
Sbjct: 3 FIISENEKLRGDGRAYDELRPIKIEAGVLKRADGSAYLEVGGNKILASVYGPRESYIRRL 62
Query: 88 MYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFA 144
+ N G + + F+ R + G D + + S + AL A++LE+FP++ VDV
Sbjct: 63 LKPNTGVIRVRYNMAPFSVDDRKRPGPDRRSTEISKIAADALRPALMLESFPRSMVDVSI 122
Query: 145 LVLESGG 151
V+E+ G
Sbjct: 123 EVIEAEG 129
>gi|297527572|ref|YP_003669596.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
gi|297256488|gb|ADI32697.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
Length = 240
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D LR D R + RP G + +A GSAY E+G TK+I +V+GPRE + + +
Sbjct: 10 DGLRHDGRRPDELRPIKMDVGVLKNADGSAYVEYGGTKIIAAVYGPREVYPRHLALPDRA 69
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C F+T R + + + S ++ +ALE + E +P+TT+DVF VL++
Sbjct: 70 LIRCRYHMAPFSTSDRKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQAD 129
Query: 151 G 151
G
Sbjct: 130 G 130
>gi|332796515|ref|YP_004458015.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
gi|332694250|gb|AEE93717.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
Length = 243
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 4/117 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R + RP G + +A GSA E GNTK++ +V+GPRE + + N L
Sbjct: 15 LRLDGRRPDELRPMKMEVGVLKNADGSAIVEVGNTKILAAVYGPREMHPRHLALPNRAVL 74
Query: 96 NCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
T F+T R + + + S ++ +ALE I++E FP+T++DVF VL++
Sbjct: 75 RVRYHMTPFSTDERKNPAPSRREIELSKVIREALESQILVEQFPRTSIDVFMEVLQA 131
>gi|281204136|gb|EFA78332.1| Exosome complex exonuclease rrp41 [Polysphondylium pallidum PN500]
Length = 248
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNI 92
+ LR D R ++ R + G N A GSAY E GNTK+ V+V+GPRE S + M++
Sbjct: 10 EGLRIDGRRNNEIRRLNMKMGIFNRADGSAYYEQGNTKITVAVYGPREVASNQRMLHDR- 68
Query: 93 GRLNCNVSYTTFAT-----PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
+NC S F++ P R + +S++ +A E I + FP++ +D++ VL
Sbjct: 69 AIVNCEYSQAAFSSATDRKPTRKSDKQSYEIASLIKQAFESTIQITLFPRSQIDIYVQVL 128
Query: 148 ESGG 151
++ G
Sbjct: 129 QADG 132
>gi|221101900|ref|XP_002160475.1| PREDICTED: exosome complex component RRP41-like [Hydra
magnipapillata]
Length = 244
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R H+ R + G + A GSAY E GNTKVI SV+GP E S ++ +
Sbjct: 10 EGLRFDGRKCHELRKITAKKGIFSQADGSAYIEQGNTKVIASVYGPHEVSNRSKTLHDST 69
Query: 94 RLNCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+NC S TF+ R D K + S +L K AI+ E +P++ +D++ V++S
Sbjct: 70 LINCQFSMATFSMSERKNRPKGDRKSTEISMLLEKTFATAIMTELYPRSQIDIYVQVIQS 129
Query: 150 GG 151
G
Sbjct: 130 DG 131
>gi|14520826|ref|NP_126301.1| exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
gi|29337010|sp|Q9V119.1|ECX1_PYRAB RecName: Full=Probable exosome complex exonuclease 1
gi|170292234|pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
gi|170292236|pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
gi|170292239|pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
gi|170292241|pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
gi|5458042|emb|CAB49532.1| rph ribonuclease PH, exosome complex exonuclease [Pyrococcus abyssi
GE5]
gi|380741368|tpe|CCE70002.1| TPA: exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
Length = 249
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
+P D + R D R ++ RP G + +A+GSAY E+G K+I +V+GPRE
Sbjct: 4 KPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELH 63
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T +
Sbjct: 64 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAI 123
Query: 141 DVFALVLES 149
DVF VL++
Sbjct: 124 DVFIEVLQA 132
>gi|315229927|ref|YP_004070363.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
gi|315182955|gb|ADT83140.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
Length = 246
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
+P D + R D R ++ RP G + +A GSAY E+G K++ +V+GPRE
Sbjct: 3 KPEDIKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKILAAVYGPREIH 62
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE AIILE FP+T +
Sbjct: 63 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPAIILELFPRTAI 122
Query: 141 DVFALVLES 149
DVF VL++
Sbjct: 123 DVFIEVLQA 131
>gi|167045225|gb|ABZ09885.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8O8]
Length = 245
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R ++ R + G + +A GSAY EFG K++ VFGPR+ K + +
Sbjct: 12 DENGIRCDGRKVNETRKVTIKAGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHLSNPD 71
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S ++ +ALE A+ILE FP+T +DVF VL+
Sbjct: 72 TGILRVRYHMEPFSVDERKNPAPSRREIEISKVVKEALEPAVILEKFPRTVIDVFLEVLQ 131
Query: 149 SGG 151
+ G
Sbjct: 132 ADG 134
>gi|402219270|gb|EJT99344.1| ribosomal protein S5 domain 2-like protein, partial [Dacryopinax
sp. DJM-731 SS1]
Length = 236
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 16/118 (13%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAM-------------MYSNIGR 94
RP F TG V +ASGSAY E K++VSV+GPR+ K + YS G
Sbjct: 35 RPIFLHTGLVPAASGSAYLESPPLKLVVSVYGPRQQKPSTSSASGVLPSLSSSAYSEKGT 94
Query: 95 LNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
L+ ++ + FAT +R + ++ ++ S + AL A++LE +PK+++DV+ VLES
Sbjct: 95 LSVSLKFAPFATRVRKAPLKETEDREISLRVRAALAPAVLLERYPKSSIDVYIHVLES 152
>gi|300176535|emb|CBK24200.2| unnamed protein product [Blastocystis hominis]
Length = 600
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
+ TG V +ASGSAY E GN K++ SV GPR+S +++ + G L C+ Y FA
Sbjct: 3 KQLLISTGVVKNASGSAYVELGNMKIMCSVQGPRDSFRSVDSQDKGALYCDFKYAPFAQK 62
Query: 108 IRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
Q + K S +L K L ++ LE FPK V+++ +VLE G
Sbjct: 63 DVYQPNLLNRETKSMSLLLEKILSTSVDLEAFPKAVVELYIMVLEVDG 110
>gi|212223175|ref|YP_002306411.1| exosome complex exonuclease Rrp41 [Thermococcus onnurineus NA1]
gi|226740341|sp|B6YSI2.1|ECX1_THEON RecName: Full=Probable exosome complex exonuclease 1
gi|212008132|gb|ACJ15514.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
Length = 249
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
+P D + R D R ++ RP G + +A GSAY E+G K++ +V+GPRE
Sbjct: 4 KPEDLKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIH 63
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T +
Sbjct: 64 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAI 123
Query: 141 DVFALVLES 149
D+F VL++
Sbjct: 124 DIFIEVLQA 132
>gi|195116638|ref|XP_002002859.1| GI10716 [Drosophila mojavensis]
gi|193913434|gb|EDW12301.1| GI10716 [Drosophila mojavensis]
Length = 249
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K N +N
Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLVIN 72
Query: 97 CNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R ++F L +AL AI E +P++ +D++ VL++ G
Sbjct: 73 CQYSQATFSTSERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADG 131
>gi|195031196|ref|XP_001988306.1| GH10637 [Drosophila grimshawi]
gi|193904306|gb|EDW03173.1| GH10637 [Drosophila grimshawi]
Length = 249
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K N +N
Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKAKKSEGNDLIIN 72
Query: 97 CNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R ++F L +AL AI E +P++ +D++ VL++ G
Sbjct: 73 CQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADG 131
>gi|223477909|ref|YP_002582206.1| Exosome complex exonuclease 1 [Thermococcus sp. AM4]
gi|214033135|gb|EEB73963.1| Exosome complex exonuclease 1 [Thermococcus sp. AM4]
Length = 248
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
RP D + R D R ++ R G + +A GSAY E+G K++ +V+GPRE
Sbjct: 3 RPEGLKLIDENGRRIDGRKKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIH 62
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T V
Sbjct: 63 PKHLQRPDTAVLRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTVV 122
Query: 141 DVFALVLES 149
DVF VL++
Sbjct: 123 DVFIEVLQA 131
>gi|195398184|ref|XP_002057704.1| GJ18275 [Drosophila virilis]
gi|194141358|gb|EDW57777.1| GJ18275 [Drosophila virilis]
Length = 249
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K N +N
Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLIIN 72
Query: 97 CNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R ++F L +AL AI E +P++ +D++ VL++ G
Sbjct: 73 CQYSQATFSTSERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADG 131
>gi|407461957|ref|YP_006773274.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus koreensis
AR1]
gi|407045579|gb|AFS80332.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus koreensis
AR1]
Length = 244
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + R D R + R + G + +A GSAY EFG+ K++V VFGPR+ K M ++
Sbjct: 12 DENGKRCDGRTVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTD 71
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S ++ +ALE A++L+ FP+T VDVF VL+
Sbjct: 72 TGILRVRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLDKFPRTAVDVFIEVLQ 131
Query: 149 SGG 151
+ G
Sbjct: 132 ADG 134
>gi|390960833|ref|YP_006424667.1| exosome complex exonuclease Rrp41 [Thermococcus sp. CL1]
gi|390519141|gb|AFL94873.1| exosome complex exonuclease Rrp41 [Thermococcus sp. CL1]
Length = 249
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
+P D + R D R ++ RP G + +A GSAY E+G K++ +V+GPRE
Sbjct: 4 KPEGLKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIH 63
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T +
Sbjct: 64 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAI 123
Query: 141 DVFALVLES 149
DVF VL++
Sbjct: 124 DVFIEVLQA 132
>gi|240104093|ref|YP_002960402.1| exosome complex exonuclease Rrp41 [Thermococcus gammatolerans EJ3]
gi|259645401|sp|C5A2B9.1|ECX1_THEGJ RecName: Full=Probable exosome complex exonuclease 1
gi|239911647|gb|ACS34538.1| 3'-5' exoribonuclease, exosome complex exonuclease 1, Rrp41p-like
protein (Rrp41p) [Thermococcus gammatolerans EJ3]
Length = 249
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
RP D + R D R ++ R G + +A GSAY E+G K++ +V+GPRE
Sbjct: 4 RPEGLKLIDENGRRIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIH 63
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T V
Sbjct: 64 PKHLQRPDTAVLRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTVV 123
Query: 141 DVFALVLES 149
DVF VL++
Sbjct: 124 DVFIEVLQA 132
>gi|341582108|ref|YP_004762600.1| exosome complex exonuclease Rrp41 [Thermococcus sp. 4557]
gi|340809766|gb|AEK72923.1| exosome complex exonuclease Rrp41 [Thermococcus sp. 4557]
Length = 249
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
+P D + R D R ++ RP G + +A GSAY E+G K++ +V+GPRE
Sbjct: 4 KPEDLKLIDENGKRVDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIH 63
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T++
Sbjct: 64 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTSI 123
Query: 141 DVFALVLES 149
D+F VL++
Sbjct: 124 DLFIEVLQA 132
>gi|161527940|ref|YP_001581766.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
gi|259645400|sp|A9A5C9.1|ECX1_NITMS RecName: Full=Probable exosome complex exonuclease 1
gi|160339241|gb|ABX12328.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
Length = 244
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + R D R + R + G + +A GS+Y EFG+ K++V VFGPR+ K M ++
Sbjct: 12 DENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTD 71
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S ++ +ALE A++LE FP+T VDVF VL+
Sbjct: 72 TGILRVRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131
Query: 149 SGG 151
+ G
Sbjct: 132 ADG 134
>gi|281200684|gb|EFA74902.1| hypothetical protein PPL_11936 [Polysphondylium pallidum PN500]
Length = 262
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVS 100
SR Q R F TG ++SASGS+Y E TK+I SV GPR + K ++ +LNC +
Sbjct: 55 SRSDEQFRQIFMNTGIISSASGSSYIEIEQTKIICSVHGPRATHKTELFET-AKLNCELK 113
Query: 101 YTTFAT-PIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
Y +F+T R + + KD+S ++ +A+ GAI LE +PK +D++ LVL G
Sbjct: 114 YASFSTHDARSDYVESTKEKDYSLIITQAIIGAIRLEKYPKAAIDIYILVLCDAG 168
>gi|70606425|ref|YP_255295.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius DSM
639]
gi|449066637|ref|YP_007433719.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius N8]
gi|449068911|ref|YP_007435992.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius
Ron12/I]
gi|76364178|sp|Q4JB27.1|ECX1_SULAC RecName: Full=Probable exosome complex exonuclease 1
gi|68567073|gb|AAY80002.1| ribonuclease PH [Sulfolobus acidocaldarius DSM 639]
gi|449035145|gb|AGE70571.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius N8]
gi|449037419|gb|AGE72844.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius
Ron12/I]
Length = 243
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R + RP G + +A GSA E GNTKVI +V+GP+E + + + L
Sbjct: 15 LRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASL 74
Query: 96 NCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
T F+T R + + + S ++ +ALE I+L FP+T +D+F VL++
Sbjct: 75 RVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQA 131
>gi|332157779|ref|YP_004423058.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
gi|331033242|gb|AEC51054.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
Length = 249
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
+P D + R D R ++ RP G + +A GSAY E+G K+I +V+GP+E
Sbjct: 4 KPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKIIAAVYGPKELH 63
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T +
Sbjct: 64 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAI 123
Query: 141 DVFALVLES 149
DVF VL++
Sbjct: 124 DVFIEVLQA 132
>gi|388583110|gb|EIM23413.1| ribosomal protein S5 domain 2-like protein [Wallemia sebi CBS
633.66]
Length = 254
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVS 100
+R + RP F + G ++SASGS Y E GNTK+ +V+GP++ K A YS+ G+LN +
Sbjct: 33 TRKNDELRPVFIKPGLISSASGSTYIECGNTKIACAVYGPKQIKNA-PYSSTGKLNVEIK 91
Query: 101 YTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ F++ IR + + SS + +AL ++ LE + K +D+F +++
Sbjct: 92 HAPFSSSIRRDPVKELEATHLSSQVTQALLPSLRLENYEKMQIDLFVTIIQ 142
>gi|268552543|ref|XP_002634254.1| C. briggsae CBR-EXOS-4.1 protein [Caenorhabditis briggsae]
gi|206557764|sp|A8WQQ5.1|EXOS4_CAEBR RecName: Full=Putative exosome complex component RRP41
Length = 240
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q R R G +A GS Y E GNTKV+ +V+GP ESK + + + C
Sbjct: 10 RMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESKASKRLEDRCAIVC 69
Query: 98 NVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S TTF+ R D K + S +L KA E I+ E+FP++ +D+F V++ G
Sbjct: 70 QYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQGDG 127
>gi|308491849|ref|XP_003108115.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
gi|308248963|gb|EFO92915.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
Length = 372
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 2 AAKPSTTTTAKATYSPIDPTRKTRPPIFS--GSDVDWLRPDSRGFHQCRPAFFRTGAVNS 59
+AKP T ++ T +P T I S G +D RP Q R R G +
Sbjct: 99 SAKPEQTPASQTTETP------TTMSIISEHGFRIDGRRP-----AQIRNINTRLGLNRN 147
Query: 60 ASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQ--GSDHK- 116
A GS Y E GNTKV+ +V+GP E K + + + C S TTF+ R D K
Sbjct: 148 AEGSCYLEHGNTKVLCAVYGPYEGKASKRLEDRCAIVCQYSTTTFSGLERKNRPRGDRKS 207
Query: 117 -DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ S +L KA E I+ E+FP++ +D+F V++ G
Sbjct: 208 TEISRLLEKAFESVILTESFPRSQIDIFCEVIQGDG 243
>gi|193700001|ref|XP_001942946.1| PREDICTED: exosome complex exonuclease MTR3-like [Acyrthosiphon
pisum]
Length = 279
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+R D R R +TG V A GSAY E G+TK+I SVF P+E + Y+ G L
Sbjct: 40 VRCDGRDISAHRNLCIKTGIVTQAKGSAYLECGSTKLICSVFDPKEVPNKVEYAKTGELQ 99
Query: 97 CNVSYTTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C + TF+ R + S+ + + L +ALE AI F + + LVLE+ G
Sbjct: 100 CEFKFATFSCRQRRTYTRDSEERQLCNELRRALEPAICRGEFANFEIHINVLVLENDG 157
>gi|383319305|ref|YP_005380146.1| archaeal exosome-like complex exonuclease 1 [Methanocella conradii
HZ254]
gi|379320675|gb|AFC99627.1| archaeal exosome-like complex exonuclease 1 [Methanocella conradii
HZ254]
Length = 252
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG 93
VD R D RG ++ RP F+ G + A GS Y EFG KV+ +V+GPRE + N
Sbjct: 9 VDGKRLDGRGLNELRPIRFKAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHL-QNAS 67
Query: 94 RLNCNVSYTTFATPIRGQ---GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
R Y A + + G D + + S + +ALE I+ E +P++ +D+F +L+
Sbjct: 68 RAIVRYRYNMAAFSVEERKRPGPDRRSIEISKVSREALESVIMQELYPRSAIDIFVEILQ 127
Query: 149 S 149
+
Sbjct: 128 A 128
>gi|374633082|ref|ZP_09705449.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
gi|373524566|gb|EHP69443.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
Length = 245
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 21 TRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP 80
+K R + G +D RPD + RP G + +A GS+ E GNTK+I +V+GP
Sbjct: 4 VQKPRLILEDGRRLDGRRPD-----ELRPMKIEIGVLKNADGSSLVEVGNTKIIAAVYGP 58
Query: 81 RESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFP 136
RE + + N L T F+T R + + + S ++ +ALE +I++E FP
Sbjct: 59 REMHPRHLALPNRAVLRVRYHMTPFSTDERKSPAPSRREIELSKVIREALESSILVEQFP 118
Query: 137 KTTVDVFALVLES 149
++++D+F V+++
Sbjct: 119 RSSIDIFMEVIQA 131
>gi|336380311|gb|EGO21464.1| hypothetical protein SERLADRAFT_473839 [Serpula lacrymans var.
lacrymans S7.9]
Length = 281
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Query: 51 FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG 110
+ G +N A+GSAY E TK+ +V+GPR+SK N GRLN V ++ F+ R
Sbjct: 70 VLQPGLINQANGSAYIETDKTKIACAVYGPRQSKTTTFSEN-GRLNVEVKFSPFSCARRK 128
Query: 111 ---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ ++ + + +H+A+ ++ LE PK+T+DVF ++E+ G
Sbjct: 129 APLRDAEDRSLAVSIHQAVLSSVRLELLPKSTIDVFITIIENDG 172
>gi|19113410|ref|NP_596618.1| exosome complex component mtr3 [Schizosaccharomyces pombe 972h-]
gi|74638748|sp|Q9P7R3.1|MTR3_SCHPO RecName: Full=Exosome complex component mtr3
gi|6983772|emb|CAB75416.1| exosomal 3'-5' exoribonuclease, PH-like (predicted)
[Schizosaccharomyces pombe]
Length = 257
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVS 100
+R +CR + + G A GS+Y E K+ +V GPR SK + + +LNC
Sbjct: 29 TRDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGPRPSK-TFAFRSSAKLNCEFR 87
Query: 101 YTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ F+T +R Q + K +S M+ A+ +I+L +PK+++DV+ V+ES G
Sbjct: 88 LSPFSTSVRQGHVQTVEEKSYSQMIEAAISPSILLHLYPKSSIDVYIQVIESDG 141
>gi|358056451|dbj|GAA97625.1| hypothetical protein E5Q_04303 [Mixia osmundae IAM 14324]
Length = 260
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 10/147 (6%)
Query: 9 TTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF 68
T+AK Y + T++ RP +R D R + R F +TG V A+GS Y E
Sbjct: 11 TSAKLIYDDVQATQEARPE----EGTTPVRSDGRAWSDLRSHFVKTGIVQDANGSCYIEA 66
Query: 69 GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYT--TFATPIR--GQGSDHKDFSSMLHK 124
G+TK++ +V+GP S A+ + +L V +T TF R G+G++ S+ +H+
Sbjct: 67 GSTKLLCAVYGPHAS--AINTTPAAKLEVEVKFTPSTFPGSRRAPGKGTESASLSADIHQ 124
Query: 125 ALEGAIILETFPKTTVDVFALVLESGG 151
AL +++L+ P++T+ V +L+ G
Sbjct: 125 ALLPSLLLDRIPRSTISVHVTLLQWDG 151
>gi|195428613|ref|XP_002062366.1| GK17502 [Drosophila willistoni]
gi|194158451|gb|EDW73352.1| GK17502 [Drosophila willistoni]
Length = 326
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA-MMYSNIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P E +A N+G LNC V+Y FAT
Sbjct: 46 RTTFLRAGVLTTVRGSAYMEYGNTKVMAIVAPPHEVVRASARRMNMGSLNCYVNYAAFAT 105
Query: 107 -PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ K SSML KALE + F +DV L++E G
Sbjct: 106 GELETVPRREKQLSSMLTKALEPVVCRNEFLNFQLDVRVLIIEDDG 151
>gi|320167599|gb|EFW44498.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864]
Length = 252
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R ++ R R G A GSAY E GNTK++ +V+GP E S+K +
Sbjct: 12 EGLRIDGRRPNELRRIQARVGVFMQADGSAYIEQGNTKILATVYGPHEVSRKNKPLHDRA 71
Query: 94 RLNCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+NC +FAT R + +D + D ++ + A EGA++ + +P++ +D+F VL+S
Sbjct: 72 IINCEYRVASFATAERKKPVRTDKRALDLAAAVRGAFEGAVMTQLYPRSQIDIFLQVLQS 131
Query: 150 GG 151
G
Sbjct: 132 DG 133
>gi|124027456|ref|YP_001012776.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
gi|254782534|sp|A2BKC0.1|ECX1_HYPBU RecName: Full=Probable exosome complex exonuclease 1
gi|123978150|gb|ABM80431.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
Length = 255
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
+R D R Q RP G +++A GSA E+G T+VI +V+GPRE+ + + + +
Sbjct: 24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAII 83
Query: 96 NCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C F+T R + + + S ++ +ALE +I E +P+T +DV+ VL+S G
Sbjct: 84 RCRYHMAPFSTAERKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSDG 142
>gi|13541138|ref|NP_110826.1| exosome complex exonuclease Rrp41 [Thermoplasma volcanium GSS1]
gi|29336899|sp|Q97BZ5.1|ECX1_THEVO RecName: Full=Probable exosome complex exonuclease 1
gi|14324525|dbj|BAB59452.1| ribonuclease PH [Thermoplasma volcanium GSS1]
Length = 248
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D LR D R F++ RP G +N A GSAY E+G K+IV V+GP+E+ K +
Sbjct: 15 DNLRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHA 74
Query: 94 RLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ + F+ R + G D + + S ++ +AL +I++E FP+ +DV+ VL++
Sbjct: 75 VVKARYNMAAFSVDERKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQA 133
>gi|242399326|ref|YP_002994750.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
739]
gi|242265719|gb|ACS90401.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
739]
Length = 246
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
+P D + R D R ++ R G + SA GSAY E+G K++ +V+GPRE
Sbjct: 3 KPEGLKLIDENGYRVDGRKKYELRKIKMEVGVLKSADGSAYVEWGKNKIMAAVYGPREIH 62
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T++
Sbjct: 63 PKHLQKPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPAVILELFPRTSI 122
Query: 141 DVFALVLES 149
D+F VL++
Sbjct: 123 DIFIEVLQA 131
>gi|225708764|gb|ACO10228.1| Exosome complex exonuclease MTR3 [Caligus rogercresseyi]
Length = 278
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFAT 106
RP F G + + GSAY E G TKV+ SVFGPRE SKK S G LN FA+
Sbjct: 49 RPLFCEVGILTQSKGSAYLERGRTKVLASVFGPREVSKKLDFSSTAGSLNVEYKEAPFAS 108
Query: 107 PIRGQG-SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
G+G + +D L + L + L +PK+ +DV VLE G
Sbjct: 109 RSDGRGEAKERDVGLFLAQTLRSTVCLHLYPKSRIDVCITVLEDDG 154
>gi|395836960|ref|XP_003791414.1| PREDICTED: exosome complex component MTR3 [Otolemur garnettii]
Length = 272
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 16/144 (11%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP +D D P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAADEDEA-PTARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALE 127
++ GRL C+ FA R G + ++ + L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGG 151
A+ L +P+ ++V AL+LE GG
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGG 155
>gi|15233167|ref|NP_191721.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|186511299|ref|NP_001118878.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|6164938|gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana]
gi|6850853|emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana]
gi|26452705|dbj|BAC43435.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|28973161|gb|AAO63905.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|332646711|gb|AEE80232.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|332646712|gb|AEE80233.1| exosome complex component RRP41 [Arabidopsis thaliana]
Length = 241
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNI 92
+ LR D R F++ R G V+ A GSA E GNTKVI +V+GPRE +K ++
Sbjct: 7 EGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDH 66
Query: 93 GRLNCNVSYTTFAT-PIRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T R Q D + + S ++ + +E I+ E P + +D+F VL++
Sbjct: 67 AVVLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQA 126
Query: 150 GG 151
G
Sbjct: 127 DG 128
>gi|167519907|ref|XP_001744293.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777379|gb|EDQ90996.1| predicted protein [Monosiga brevicollis MX1]
Length = 214
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVS 100
SR + R +TG V+ A+GS + E G TKV+V+ +GP E+ +A +S++G L C+++
Sbjct: 14 SREAGEPRSLALQTGVVSRAAGSCFLEMGRTKVMVACYGPEEAARAGTFSDMGVLECHIT 73
Query: 101 YTTFATPIRG--QGSD-----HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
FA R Q +D +D +M+ AI+LE +PK+T+ + A +LE G
Sbjct: 74 RAPFAEQKRATLQETDADRGLRRDLDAMIKP----AILLEKYPKSTIALQATILEDDG 127
>gi|57641569|ref|YP_184047.1| exosome complex exonuclease Rrp41 [Thermococcus kodakarensis KOD1]
gi|73919276|sp|Q5JIR6.1|ECX1_PYRKO RecName: Full=Probable exosome complex exonuclease 1
gi|57159893|dbj|BAD85823.1| exosome subunit Rrp41p homolog, 3'-5' exoribonuclease [Thermococcus
kodakarensis KOD1]
Length = 249
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
RP D + R D R ++ RP G + +A GSAY E+G KV+ +V+GPRE
Sbjct: 4 RPEGLKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIH 63
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A++L FP+T +
Sbjct: 64 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALLLHMFPRTAI 123
Query: 141 DVFALVLES 149
DVF +L++
Sbjct: 124 DVFIEILQA 132
>gi|395546050|ref|XP_003774907.1| PREDICTED: exosome complex component MTR3-like [Sarcophilus
harrisii]
Length = 305
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 10/112 (8%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI-GRLNCNVSYTTFAT 106
RP + R G + A+GS+Y E G+TK++ SV+GPR+ + + + GRL C+ F+
Sbjct: 44 RPVYIRAGQTSQATGSSYLESGDTKIVASVYGPRQVEGGEPLTGLQGRLICDFRRAPFSG 103
Query: 107 PIRGQ-------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
RG+ + K+ S L +AL A+ L +P+ ++V+ LVLE GG
Sbjct: 104 --RGKRRVPSSNNREEKEMSLALQEALMPAVQLLRYPRAQLEVYVLVLEDGG 153
>gi|297821020|ref|XP_002878393.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
gi|297324231|gb|EFH54652.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNI 92
+ LR D R F++ R G V+ A GSA E GNTKVI +V+GPRE +K ++
Sbjct: 7 EGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDH 66
Query: 93 GRLNCNVSYTTFAT-PIRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T R Q D + + S ++ + +E I+ E P + +D+F VL++
Sbjct: 67 AVVLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQA 126
Query: 150 GG 151
G
Sbjct: 127 DG 128
>gi|296243060|ref|YP_003650547.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
gi|296095644|gb|ADG91595.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
Length = 249
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
D R D R + RP + G + +A+GSA E+G TKV+ +VFGPRE+ + + +
Sbjct: 17 DGTRLDGRRLDELRPVKIKVGVLKNANGSALVEYGGTKVLAAVFGPREALPRHIALPDRA 76
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L F+T R + + + S ++ +ALE + E FP+T++D+F VL++
Sbjct: 77 TLRVRYHMAPFSTSERKSPAPSRREIELSKVIREALESVVFSEQFPRTSIDIFIEVLQAD 136
Query: 151 G 151
G
Sbjct: 137 G 137
>gi|15920655|ref|NP_376324.1| exosome complex exonuclease Rrp41 [Sulfolobus tokodaii str. 7]
Length = 247
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R + RP G + +A GSA E GNTKVI +V+GP+E + + + L
Sbjct: 19 LRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVL 78
Query: 96 NCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
T F+T R + + + S ++ +ALE I++E FP+T +DVF VL++
Sbjct: 79 RVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQA 135
>gi|363548435|sp|Q975G8.2|ECX1_SULTO RecName: Full=Probable exosome complex exonuclease 1
gi|342306198|dbj|BAK54287.1| exosome core subunit Rrp41 [Sulfolobus tokodaii str. 7]
Length = 243
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R + RP G + +A GSA E GNTKVI +V+GP+E + + + L
Sbjct: 15 LRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVL 74
Query: 96 NCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
T F+T R + + + S ++ +ALE I++E FP+T +DVF VL++
Sbjct: 75 RVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQA 131
>gi|291000756|ref|XP_002682945.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
gruberi]
gi|284096573|gb|EFC50201.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
gruberi]
Length = 300
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGN-TKVIVSVFGPRESKKAMMYSNIGRLN 96
R D+R + R F + G + A GSAY E+ N TKVI SV+GPR+ +S+IG +
Sbjct: 65 RQDNRTCDKFRNVFMQVGVIKQARGSAYMEYQNGTKVICSVYGPRQISARNEFSDIGAIQ 124
Query: 97 CNVSYTTFATPIRGQGSDHK----------------DFSSMLHKALEGAIILETFPKTTV 140
C FA Q S+++ + S L +ALE +I L+ +PK+ +
Sbjct: 125 CEYRVANFAY----QSSNNQSTFLNNSSNNNRRHHVENSIHLREALEVSIRLDKYPKSVI 180
Query: 141 DVFALVLESGG 151
DV+ +L+ G
Sbjct: 181 DVYCFILQDDG 191
>gi|170290983|ref|YP_001737799.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175063|gb|ACB08116.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 248
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 4/117 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
+R D R H+ RP G + A GSA+ E+G +++ +VFGPRE K M+ + +
Sbjct: 18 IRTDGRLPHEMRPIKMMVGVLEKADGSAFVEWGGNRILAAVFGPREVHPKHMVLPDRALI 77
Query: 96 NCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ F+TP R + G D + + S ++ +AL+ AI E +P + +D+F VL S
Sbjct: 78 RARYNMAPFSTPERRRPGPDRRSIELSKVIREALKPAIFAENYPGSVIDIFVEVLRS 134
>gi|156388129|ref|XP_001634554.1| predicted protein [Nematostella vectensis]
gi|156221638|gb|EDO42491.1| predicted protein [Nematostella vectensis]
Length = 247
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ LR D R + R + G ++ A GSAY E GNTK + +V+GP E + KA +
Sbjct: 10 EGLRIDGRKASELRKMVCKVGVLSQADGSAYIEMGNTKALATVYGPHEVQNKAKALHDRV 69
Query: 94 RLNCNVSYTTFATPIRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
LN TF+T R + D K + S M+ + E AI++ +P++ +D++ VL++
Sbjct: 70 LLNVQFGMATFSTGERKKKPRGDRKATELSMMVRRTFEAAILINLYPRSQIDIYVQVLQA 129
Query: 150 GG 151
G
Sbjct: 130 DG 131
>gi|55644221|ref|XP_523406.1| PREDICTED: exosome complex component MTR3 [Pan troglodytes]
gi|410209962|gb|JAA02200.1| exosome component 6 [Pan troglodytes]
gi|410209964|gb|JAA02201.1| exosome component 6 [Pan troglodytes]
gi|410268124|gb|JAA22028.1| exosome component 6 [Pan troglodytes]
gi|410289018|gb|JAA23109.1| exosome component 6 [Pan troglodytes]
Length = 272
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 16/144 (11%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP +D + P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAADEEEA-PGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALE 127
++ S GRL C+ FA R G + ++ + L +ALE
Sbjct: 72 AEGGERGSGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGG 151
A+ L +P+ ++V AL+LE GG
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGG 155
>gi|395748070|ref|XP_003778708.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component MTR3
[Pongo abelii]
Length = 272
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 16/144 (11%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP +D + P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAADEEEA-PGARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALE 127
++ GRL C+ FA R G + ++ + L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLLCDXRRAPFAGRRRRAPPGGCEERELALALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGG 151
A+ L +P+ ++V AL+LE GG
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGG 155
>gi|195435372|ref|XP_002065667.1| GK15569 [Drosophila willistoni]
gi|194161752|gb|EDW76653.1| GK15569 [Drosophila willistoni]
Length = 251
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES--KKAMMYSNIGR 94
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++ K SN
Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKNKSSESNDVI 72
Query: 95 LNCNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+NC S TF+T R ++F L +AL AI E +P++ +DV+ VL++
Sbjct: 73 INCQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEVLQAD 132
Query: 151 G 151
G
Sbjct: 133 G 133
>gi|332017939|gb|EGI58588.1| Exosome complex exonuclease RRP41 [Acromyrmex echinatior]
Length = 272
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 32 SDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYS 90
+D LR D R + R R G A GSAY E GNTKV+ +V+GPR+S+ A S
Sbjct: 7 NDQGGLRIDGRRALELRQIRMRMGVFGQADGSAYIEHGNTKVLAAVYGPRQSRSSASRNS 66
Query: 91 NIGRLNCNVSYTTFA-----TPIRGQGS-DHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+NC S F+ R +G ++ S+ L A+E I LE +P++ +DVF
Sbjct: 67 TKAIINCQYSMAVFSFTSGERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRSQIDVFV 126
Query: 145 LVLESGG 151
VL+ G
Sbjct: 127 EVLQVDG 133
>gi|16082286|ref|NP_394747.1| exosome complex exonuclease Rrp41 [Thermoplasma acidophilum DSM
1728]
gi|29336949|sp|Q9HIP2.1|ECX1_THEAC RecName: Full=Probable exosome complex exonuclease 1
gi|10640637|emb|CAC12415.1| RNase PH (yeast SIK6) related protein [Thermoplasma acidophilum]
Length = 248
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D LR D R F++ RP + G +N A GSAY E+G K++V V+GP+E+ K +
Sbjct: 15 DNLRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHA 74
Query: 94 RLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ + F+ R + G D + + S ++ +AL +I++E FP+ +DV+ VL++
Sbjct: 75 IVKARYNMAAFSVDERKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQA 133
>gi|195472532|ref|XP_002088554.1| GE11809 [Drosophila yakuba]
gi|194174655|gb|EDW88266.1| GE11809 [Drosophila yakuba]
Length = 246
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 7/119 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K S I N
Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKQTESII---N 69
Query: 97 CNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R D K +F L +AL AI E +P++ +D++ VL++ G
Sbjct: 70 CQYSQATFSTAERKNRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADG 128
>gi|341881249|gb|EGT37184.1| hypothetical protein CAEBREN_28802 [Caenorhabditis brenneri]
gi|341892052|gb|EGT47987.1| hypothetical protein CAEBREN_23050 [Caenorhabditis brenneri]
Length = 240
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q R R G +A GS+Y E GNTKV+ +V+GP E K + + + C
Sbjct: 10 RLDGRRPAQIRNVNTRLGLNRNAEGSSYLEHGNTKVLCAVYGPYEGKASKRLEDRCAIVC 69
Query: 98 NVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S TTF+ R D K + S +L KA E I+ E+FP++ +D+F V++ G
Sbjct: 70 QYSTTTFSGLERKNRPRGDRKSTEMSRLLEKAFESVILTESFPRSQIDIFCEVIQGDG 127
>gi|328865596|gb|EGG13982.1| Exosome complex exonuclease rrp41 [Dictyostelium fasciculatum]
Length = 244
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
+ LR D R ++ R R G +N A GS+Y E GNTK+ V+++GP ES +
Sbjct: 10 EGLRIDGRRSNEIRRLNMRMGVLNRADGSSYYEQGNTKITVAIYGPHESTTQKSLFDRAS 69
Query: 95 LNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C + ++F+T R S + S+++ +A E ++ FP++ +D++ VL+S
Sbjct: 70 IKCEFAMSSFSTSERKVKSRFDKTAYETSTLIKQAFESTVLTHLFPRSQIDIYVQVLQSD 129
Query: 151 G 151
G
Sbjct: 130 G 130
>gi|312370650|gb|EFR18995.1| hypothetical protein AND_23239 [Anopheles darlingi]
Length = 261
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
R + G V++A GSAY E GNTK IVSVF PRE K Y +G L C+ ++ FA+
Sbjct: 6 RMCILKVGVVSTAKGSAYIELGNTKAIVSVFDPREIPKQSKYCALGELYCDFKFSPFASH 65
Query: 108 IR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+R + + ++ L AL A+ FP +DVFA VLE G
Sbjct: 66 LRKTPQSDTRGRSLAAALASALNPAVCRHLFPNLQLDVFANVLEDDG 112
>gi|48477466|ref|YP_023172.1| exosome complex exonuclease Rrp41 [Picrophilus torridus DSM 9790]
gi|48430114|gb|AAT42979.1| ribonuclease PH [Picrophilus torridus DSM 9790]
Length = 239
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 11/122 (9%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES--KKAMMYSNI 92
D LR D R F++ RP TG V++A GSAY E+G K++V+V+ RE+ K A NI
Sbjct: 10 DGLRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVY-VREAYPKHA---QNI 65
Query: 93 GRLNCNVSYTT--FATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
+ Y F+ R + G D + + S ++ +ALE AI++E P+ +DV+ VL
Sbjct: 66 DKAIVKARYNMAGFSVEERKRPGPDRRTMEISKLISEALESAIMVERLPRAEIDVYIEVL 125
Query: 148 ES 149
E+
Sbjct: 126 EA 127
>gi|426382769|ref|XP_004057973.1| PREDICTED: exosome complex component MTR3, partial [Gorilla gorilla
gorilla]
Length = 208
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 16/144 (11%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP +D + P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAADEEEA-PGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALE 127
++ GRL C+ FA R G + ++ + L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLVCDFRRAPFAGRRRRAPPGGCEERELALALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGG 151
A+ L +P+ ++V AL+LE GG
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGG 155
>gi|17402904|ref|NP_478126.1| exosome complex component MTR3 [Homo sapiens]
gi|74736141|sp|Q5RKV6.1|EXOS6_HUMAN RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog; Short=hMtr3; AltName: Full=p11
gi|122920912|pdb|2NN6|F Chain F, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
gi|55930874|gb|AAH52252.1| Exosome component 6 [Homo sapiens]
gi|119572226|gb|EAW51841.1| exosome component 6 [Homo sapiens]
Length = 272
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 16/144 (11%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP +D + P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAADEEEA-PGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALE 127
++ GRL C+ FA R G + ++ + L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGG 151
A+ L +P+ ++V AL+LE GG
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGG 155
>gi|340521609|gb|EGR51843.1| hypothetical protein TRIREDRAFT_55589 [Trichoderma reesei QM6a]
Length = 286
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF--------GNT 71
P T PP++ ++ D R RP + +TG SASGSAY E
Sbjct: 10 PGGSTLPPVYDETESDAASLRQRAPDAIRPLYLKTGVTPSASGSAYLEIEPREGKHGSGM 69
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ +V + FAT R + S KD S++L AL G
Sbjct: 70 KLACTVHGPRSLPRSAPFSPYMVLSTHVKFAPFATKQRRGYLRDSSEKDLSTLLETALRG 129
Query: 129 AIILETFPKTTVDVFALVLE 148
A+I + +PK+ VDV ++E
Sbjct: 130 AMIADRWPKSGVDVVVTIIE 149
>gi|315427141|dbj|BAJ48756.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
gi|315427160|dbj|BAJ48774.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
gi|343485775|dbj|BAJ51429.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
Length = 246
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + LR D R + R G + GSAY E G T++ V GPRE K + +
Sbjct: 11 DENGLRVDGRRPDEMRKMRMEVGVLEKTDGSAYVELGGTRIYAGVIGPREVHPKHLELPD 70
Query: 92 IGRLNCNVSYTTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G +NC +F+ R G + S ++ +ALE + LE FP+ +D+F V++
Sbjct: 71 KGVINCRYHMASFSVDERKPLGMTRREIELSKVIREALETVVFLEEFPRMMIDIFVEVIQ 130
Query: 149 SGG 151
+ G
Sbjct: 131 ADG 133
>gi|195351217|ref|XP_002042132.1| GM25757 [Drosophila sechellia]
gi|194123956|gb|EDW45999.1| GM25757 [Drosophila sechellia]
Length = 246
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K S I N
Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVI---N 69
Query: 97 CNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R D K +F L +AL AI E +P++ +D++ VL+ G
Sbjct: 70 CQYSQATFSTAERKNRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQDDG 128
>gi|194860851|ref|XP_001969665.1| GG10219 [Drosophila erecta]
gi|190661532|gb|EDV58724.1| GG10219 [Drosophila erecta]
Length = 246
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 7/119 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K S I N
Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKSKHTESII---N 69
Query: 97 CNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R D K +F L +AL AI E +P++ +D++ VL++ G
Sbjct: 70 CQYSQATFSTAERKYRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADG 128
>gi|148679539|gb|EDL11486.1| mCG3764 [Mus musculus]
Length = 253
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 17/145 (11%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP ++ D P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAAEDDET-PAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPIR----GQGSDHKDFSSMLHKAL 126
++ S GRL C+ F+ R G G + ++ L +AL
Sbjct: 72 AEGGERGSGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGGGGEDRELGLALQEAL 131
Query: 127 EGAIILETFPKTTVDVFALVLESGG 151
E A+ L +P+ ++V AL+LE GG
Sbjct: 132 EPAVRLGRYPRAQLEVSALLLEDGG 156
>gi|146302862|ref|YP_001190178.1| exosome complex exonuclease Rrp41 [Metallosphaera sedula DSM 5348]
gi|145701112|gb|ABP94254.1| ribosomal RNA-processing protein RRP41/SKI6 [Metallosphaera sedula
DSM 5348]
Length = 245
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 31 GSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMY 89
G +D RPD + RP G + +A GS+ E GNTK+I +V+GPRE + +
Sbjct: 14 GRRLDGRRPD-----ELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLAL 68
Query: 90 SNIGRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
N L T F+T R + S ++ +ALE +I++E FP++++DVF V
Sbjct: 69 PNRATLRVRYHMTPFSTDERKSPVPSRREIELSKVIREALESSILVEQFPRSSIDVFMEV 128
Query: 147 LES 149
+++
Sbjct: 129 IQA 131
>gi|308512717|gb|ADO33012.1| exosome complex exonuclease RRP41 [Biston betularia]
Length = 245
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R ++ R + G GSAY E GNTKV+ +V+GP ++ K+ M + +N
Sbjct: 8 LRLDGRRPNELRRIRCKLGVFKQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSNEGVVVN 67
Query: 97 CNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R D K + S L +AL AI E +P++ +DV+ VL++ G
Sbjct: 68 CQYSMATFSTGERKNRPHGDRKSTEMSLHLRQALTAAIKTELYPRSQIDVYVEVLQADG 126
>gi|153791339|ref|NP_001093283.1| mRNA transport regulator 3 [Bombyx mori]
gi|95103116|gb|ABF51499.1| mRNA transport regulator 3 [Bombyx mori]
Length = 268
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 53 RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQ- 111
RT V+ A GSAY E TKV+ SVF PRE + +G+L C V + F+ P + +
Sbjct: 20 RTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCPRKRRP 79
Query: 112 ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ K S L +ALE A+ FP +DV +LE G
Sbjct: 80 YVPDVEEKALSVALRQALEPAVCRHFFPDYQIDVLIYILEHDG 122
>gi|452822821|gb|EME29837.1| exosome complex component RRP41 [Galdieria sulphuraria]
Length = 249
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D LR D R + R R G + A GS + E GNT V+ +V+GPRE S+ G
Sbjct: 10 DGLRTDGRRPLEIRKVTCRMGILPRADGSCHLEMGNTIVLATVYGPRELSSR--QSSCGI 67
Query: 95 LNCNVSYTTFATP--IRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C S +FA+ RG+ SD + +S + K E ++ + FPK+ VD+F VL++
Sbjct: 68 IRCEYSMASFASTDRRRGKRSDRNSVEMASSIKKTFENVLLTDLFPKSRVDIFIQVLQAD 127
Query: 151 G 151
G
Sbjct: 128 G 128
>gi|255513309|gb|EET89575.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 246
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 15/128 (11%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNI 92
VD R D R F++ RP G + +A+GSAY E+GN KV+ +V+GP+E+ + + +N
Sbjct: 12 VDGKRLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAAVYGPKEATPRHLADTNK 71
Query: 93 GRLNCNVSYTTFATPIRGQGSDHK---------DFSSMLHKALEGAIILETFPKTTVDVF 143
+ C S F++ DH + S + + E ++LE FP + +++F
Sbjct: 72 AIIKCRYSMAPFSSM-----GDHGRSGPNRRAIEISKVTKEVFENVVMLEEFPGSEIEIF 126
Query: 144 ALVLESGG 151
+L+S G
Sbjct: 127 IEILQSDG 134
>gi|30794378|ref|NP_082550.1| exosome complex component MTR3 [Mus musculus]
gi|81875189|sp|Q8BTW3.1|EXOS6_MOUSE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|26353554|dbj|BAC40407.1| unnamed protein product [Mus musculus]
gi|109734233|gb|AAI16986.1| Exosome component 6 [Mus musculus]
gi|111599953|gb|AAI19083.1| Exosome component 6 [Mus musculus]
Length = 273
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 17/145 (11%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP ++ D P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAAEDDET-PAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPIR----GQGSDHKDFSSMLHKAL 126
++ S GRL C+ F+ R G G + ++ L +AL
Sbjct: 72 AEGGERGSGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGGGGEDRELGLALQEAL 131
Query: 127 EGAIILETFPKTTVDVFALVLESGG 151
E A+ L +P+ ++V AL+LE GG
Sbjct: 132 EPAVRLGRYPRAQLEVSALLLEDGG 156
>gi|385806380|ref|YP_005842778.1| exosome complex exonuclease 1 [Fervidicoccus fontis Kam940]
gi|383796243|gb|AFH43326.1| exosome complex exonuclease 1 [Fervidicoccus fontis Kam940]
Length = 246
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + LR D R Q RP + G + +A GSA +G T+V+ +V+GPRE+ + M +
Sbjct: 11 DENGLRVDGRRPDQLRPISMKVGILKNAQGSALVSYGKTQVMAAVYGPREALPRHMTLPD 70
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L F+T R + + + S ++ +ALE + E FP+TT+DVF VL+
Sbjct: 71 RAILRIRYHMAPFSTSERKSPAPTRREIELSKVIREALEATVFSELFPRTTIDVFIEVLQ 130
Query: 149 SGG 151
+ G
Sbjct: 131 ADG 133
>gi|449451735|ref|XP_004143616.1| PREDICTED: exosome complex component RRP41-like [Cucumis sativus]
gi|449516461|ref|XP_004165265.1| PREDICTED: exosome complex component RRP41-like [Cucumis sativus]
Length = 241
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ LR D R + R GAV+ A+GSA E GNTKV+ +V+GPRE + K+ SN
Sbjct: 7 EGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQA 66
Query: 94 RLNCNVSYTTFAT--PIRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C + F+T +R D + + S ++ + +E I+ P++ +D+F VL++
Sbjct: 67 LVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFVQVLQA 126
Query: 150 GG 151
G
Sbjct: 127 DG 128
>gi|156937005|ref|YP_001434801.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
gi|156565989|gb|ABU81394.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
Length = 241
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNI 92
VD R D RG RP + G + +A GSA+ G T+V+ +V+GPRE + M+ +
Sbjct: 11 VDGKRHDGRGPADLRPLEMKVGVLYNADGSAWLRIGGTEVVAAVYGPREPPMRGMVLPDR 70
Query: 93 GRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C F+T R + + + S ++ +ALE I+ FP+T +DVF V+ +
Sbjct: 71 AVIRCRYHMAPFSTDERKNPAPSRREIELSKVIREALEATILTHLFPRTIIDVFIEVIRA 130
Query: 150 GG 151
G
Sbjct: 131 DG 132
>gi|24584046|ref|NP_609618.2| Ski6, isoform A [Drosophila melanogaster]
gi|442627738|ref|NP_001260437.1| Ski6, isoform B [Drosophila melanogaster]
gi|7298022|gb|AAF53263.1| Ski6, isoform A [Drosophila melanogaster]
gi|201065945|gb|ACH92382.1| FI07225p [Drosophila melanogaster]
gi|440213772|gb|AGB92972.1| Ski6, isoform B [Drosophila melanogaster]
Length = 246
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K S I N
Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVI---N 69
Query: 97 CNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R D K +F L +AL AI E +P++ +D++ VL+ G
Sbjct: 70 CQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQDDG 128
>gi|17946442|gb|AAL49254.1| RE67757p [Drosophila melanogaster]
Length = 246
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K S I N
Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVI---N 69
Query: 97 CNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R D K +F L +AL AI E +P++ +D++ VL+ G
Sbjct: 70 CQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQDDG 128
>gi|358378117|gb|EHK15799.1| hypothetical protein TRIVIDRAFT_75047 [Trichoderma virens Gv29-8]
Length = 286
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF--------GNT 71
P + PP++ ++D + R RP + +TG SASGSAY E
Sbjct: 10 PGGSSLPPVYDDGELDAVSRRQRAPDAIRPLYLKTGVTPSASGSAYLEIEPREGEHGSGM 69
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ +V + FAT R + S KD S+ L AL G
Sbjct: 70 KLTCTVHGPRSLPRSAPFSPYMVLSTHVKFAPFATKQRRGYLRDSSEKDLSTHLETALRG 129
Query: 129 AIILETFPKTTVDVFALVLE 148
A+I + +PK+ VDV ++E
Sbjct: 130 AMIADRWPKSGVDVVVTIIE 149
>gi|330835838|ref|YP_004410566.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
gi|329567977|gb|AEB96082.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
Length = 245
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 31 GSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMY 89
G +D RPD + RP G + +A GS+ E GNTK+I +V+GPRE + +
Sbjct: 14 GRRLDGRRPD-----ELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLAL 68
Query: 90 SNIGRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
N L T F+T R + S ++ +ALE ++++E FP++++DVF V
Sbjct: 69 PNRATLRVRYHMTPFSTDERKSPVPSRREIELSKVIREALESSVLVEQFPRSSIDVFMEV 128
Query: 147 LES 149
+++
Sbjct: 129 IQA 131
>gi|291233253|ref|XP_002736568.1| PREDICTED: exosome component 4-like [Saccoglossus kowalevskii]
Length = 246
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKKAMMYSNIGR 94
R D R H+ R R G A GSAY E GNTKV+ +V+GP E + ++ +
Sbjct: 13 RADGRRPHELRKIRCRMGVFRQADGSAYIEQGNTKVLATVYGPHEITGGRSKALHDKV-L 71
Query: 95 LNCNVSYTTFAT---PIRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVFALVLESG 150
LNC S TF+T R +G SM L + + AI+ +P++ +D++ VL+S
Sbjct: 72 LNCQYSMATFSTGERKTRPKGDRRSQEMSMNLRRTFQAAILTHLYPRSQIDIYVQVLQSD 131
Query: 151 G 151
G
Sbjct: 132 G 132
>gi|403415678|emb|CCM02378.1| predicted protein [Fibroporia radiculosa]
Length = 1310
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 17/136 (12%)
Query: 26 PPIFSGSD--VDWL--RP-DSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP 80
PPIF D V W +P R RP ++ A+GSAY E TK+ +V+GP
Sbjct: 18 PPIFEDGDSTVLWSAGKPRQGRASGDIRPICL----ISQANGSAYIETERTKIACAVYGP 73
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFA-----TPIRGQGSDHKDFSSMLHKALEGAIILETF 135
R+SK +Y+ GRLN V + F+ PIR ++ + + +H+A+ ++ LE
Sbjct: 74 RQSKTT-VYNENGRLNVEVKFAPFSCTRRRAPIR--DAEDRSIAMQIHQAILPSVRLELL 130
Query: 136 PKTTVDVFALVLESGG 151
PK+T+D+F V+E+ G
Sbjct: 131 PKSTIDIFITVIENDG 146
>gi|282165297|ref|YP_003357682.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
gi|282157611|dbj|BAI62699.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
Length = 254
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG 93
+D R D RG ++ RP F+ G + A GS Y EFG KV+ +V+GPRE + N
Sbjct: 9 IDGKRLDGRGPNELRPIKFKAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHL-QNAS 67
Query: 94 RLNCNVSYTTFATPIRGQ---GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
R Y A + + G D + + S + +ALE ++ E +P++ VD+F +L+
Sbjct: 68 RAIVRYRYNMAAFSVEERKRPGPDRRSIEISKVSREALESVVLEELYPRSAVDIFVEILQ 127
Query: 149 S 149
+
Sbjct: 128 A 128
>gi|345571085|gb|EGX53900.1| hypothetical protein AOL_s00004g559 [Arthrobotrys oligospora ATCC
24927]
Length = 335
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 8/138 (5%)
Query: 20 PTRKTRPPIF-SGSDVDWLRP--DSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVS 76
P+ T PP+F S S ++P SR + R F RTG ++S +GS++ E K+ VS
Sbjct: 14 PSHGTTPPVFLSSSSSGAVKPKQSSRSPDEIRKIFLRTGLISSVTGSSFLEIAPLKLSVS 73
Query: 77 VFGPRESKK--AMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAII 131
V GPR + + ++ L V + FA+ +R + S +D S L++AL GAI
Sbjct: 74 VLGPRPLPRTSSTPFAAQAILTTEVKFAPFASTVRRGYIRDSSERDLGSRLYQALVGAIR 133
Query: 132 LETFPKTTVDVFALVLES 149
E +PK+ ++V +L+S
Sbjct: 134 RELYPKSRIEVVVTILDS 151
>gi|116754659|ref|YP_843777.1| exosome complex exonuclease Rrp41 [Methanosaeta thermophila PT]
gi|116666110|gb|ABK15137.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosaeta
thermophila PT]
Length = 245
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D +R D R F + RP G + A GS Y E G+ KVI +V+GPRE + + N
Sbjct: 9 DGIRLDGRRFDELRPIKMEVGVLKRADGSCYMEMGDNKVIAAVYGPREVHPRHLQEVNRA 68
Query: 94 RLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ + +F+ R + G D + + S + +ALE I+ FPK+ +D+F VL++
Sbjct: 69 IIRYRYNMASFSVEERRRPGPDRRSYELSKVSREALEPVILTSYFPKSVIDIFVEVLQA 127
>gi|408389934|gb|EKJ69353.1| hypothetical protein FPSE_10466 [Fusarium pseudograminearum CS3096]
Length = 283
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 12/140 (8%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT-------- 71
P T PPIF SD + +R + R + +TG SASGSAY E +
Sbjct: 10 PGGNTVPPIFE-SDESIVPRRTRAANGIRAQYLKTGVTPSASGSAYLEIESQDASGSKGM 68
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ +V Y FAT R + S +D SS L AL G
Sbjct: 69 KLTCTVHGPRSLPRSAPFSPHMVLSTHVKYAPFATRQRRGYLRDSSERDLSSHLEAALRG 128
Query: 129 AIILETFPKTTVDVFALVLE 148
AII + +PK+ VDV V+E
Sbjct: 129 AIIADRWPKSGVDVIVTVIE 148
>gi|389860735|ref|YP_006362975.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermogladius
cellulolyticus 1633]
gi|388525639|gb|AFK50837.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermogladius
cellulolyticus 1633]
Length = 242
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
D LR D R + RP G + +A+GSA E+G TKV+ +V+GPRE KA+ +
Sbjct: 12 DGLRVDGRKPDELRPIRMEIGVLKNANGSALVEYGGTKVLAAVYGPREVIPKAVQLPDRA 71
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---------DFSSMLHKALEGAIILETFPKTTVDVFA 144
L F+T ++HK + S ++ +ALE + + FP+ ++DVF
Sbjct: 72 VLRVRYHMAPFST------TEHKSPAPTRREIELSKVIREALESVVFADQFPRASIDVFI 125
Query: 145 LVLESGG 151
V+++ G
Sbjct: 126 EVIQADG 132
>gi|358396864|gb|EHK46239.1| hypothetical protein TRIATDRAFT_43269 [Trichoderma atroviride IMI
206040]
Length = 286
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF--------GNT 71
P T PP++ +++ R RP + +TG SASGSAY E
Sbjct: 10 PGSSTLPPVYDDGELNAASRRQRAPDAIRPLYLKTGVTPSASGSAYLEIEPREGEHGSGM 69
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ +V + FAT R + S KD S+ L AL G
Sbjct: 70 KLTCTVHGPRSLPRSAPFSPYMVLSTHVKFAPFATKQRRGYIRDSSEKDLSTHLETALRG 129
Query: 129 AIILETFPKTTVDVFALVLE 148
A+I + +PK+ VD+ ++E
Sbjct: 130 ALIADRWPKSGVDIVVTIIE 149
>gi|307174738|gb|EFN65093.1| Exosome complex exonuclease RRP41 [Camponotus floridanus]
Length = 274
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 17/127 (13%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-- 94
LR D R + R R G A GSAY E GNTKV+ +V+GP + K SNI R
Sbjct: 13 LRSDGRRALELRQIRLRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPK-----SNISRNS 67
Query: 95 ----LNCNVSYTTFA-----TPIRGQGS-DHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+NC S F+ R +G ++ S+ L A+E I LE +P++ +D+F
Sbjct: 68 TKAFVNCQYSMAVFSFTSGERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRSQIDIFV 127
Query: 145 LVLESGG 151
VL+ G
Sbjct: 128 EVLQVDG 134
>gi|405971078|gb|EKC35934.1| Exosome complex exonuclease RRP41 [Crassostrea gigas]
Length = 245
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R H+ R + G + A GSAY E GNTKV+ +V+GP E + ++ + + +
Sbjct: 13 RIDGRRSHELRKIQCKLGVFSQADGSAYVEQGNTKVLAAVYGPHEIRGSRSKLLQDKVLV 72
Query: 96 NCNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + ++ + L + AI+ P++ +D+F VL+S G
Sbjct: 73 NCQYSMATFSTSERKRRPRGDRKSQEMTMHLQQTFNAAILTSLHPRSQIDIFVEVLQSDG 132
>gi|71981632|ref|NP_001021274.1| Protein EXOS-4.1, isoform a [Caenorhabditis elegans]
gi|6226696|sp|Q17533.2|EXOS4_CAEEL RecName: Full=Putative exosome complex component RRP41; AltName:
Full=Ribosomal RNA-processing protein 41
gi|3873830|emb|CAA97771.3| Protein EXOS-4.1, isoform a [Caenorhabditis elegans]
Length = 240
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q R R G +A GS Y E GNTKV+ +V+GP E K + + + C
Sbjct: 10 RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVC 69
Query: 98 NVSYTTFATPIRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S T F+ R + D K + S +L KA E I+ E FP++ +D+F V++ G
Sbjct: 70 QYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDG 127
>gi|257076444|ref|ZP_05570805.1| exosome complex exonuclease Rrp41 [Ferroplasma acidarmanus fer1]
Length = 240
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 11/122 (9%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES--KKAMMYSNI 92
D LR D R ++ RP +TG V A GSA+ E+G K+IV+V+ RE+ K A NI
Sbjct: 11 DGLRLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVY-VREAYPKHA---QNI 66
Query: 93 GRLNCNVSYTTFATPIRGQ---GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
R Y + + G D + + S ++ +AL AI+LE P+ +DVF VL
Sbjct: 67 DRAIVKARYNMSGYSVEERKRPGPDRRTMEISKVVSEALSSAIVLEKLPRAEIDVFIQVL 126
Query: 148 ES 149
E+
Sbjct: 127 EA 128
>gi|325969194|ref|YP_004245386.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
gi|323708397|gb|ADY01884.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
Length = 246
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 7/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRLN 96
R D R ++ RP G +++A GSA +GNT ++ +V+GPRE +K + + L
Sbjct: 15 RSDGRLPNEHRPVRMEVGVISNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74
Query: 97 CNVSYTTFATPIRGQGS-----DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
F+T G+ S + S ++ ALE +ILE FP+TT+DV+ VL++ G
Sbjct: 75 VRYHMIPFSTS-EGRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQADG 133
>gi|307594960|ref|YP_003901277.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
gi|307550161|gb|ADN50226.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
Length = 246
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNI 92
V+ R D R ++ RP G + +A GSA +GNT ++ +V+GPRE +K + +
Sbjct: 11 VNGKRSDGRLPNEHRPVRMEVGVIKNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDK 70
Query: 93 GRLNCNVSYTTFATPIRGQGS-----DHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
L F+T G+ S + S ++ ALE +ILE FP+TT+DV+ VL
Sbjct: 71 AILRVRYHMAPFSTS-EGRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVL 129
Query: 148 ESGG 151
++ G
Sbjct: 130 QADG 133
>gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1]
gi|29337017|sp|Q9YC03.1|ECX1_AERPE RecName: Full=Probable exosome complex exonuclease 1
gi|5105131|dbj|BAA80445.1| exosome complex exonuclease Rrp41 homologue [Aeropyrum pernix K1]
Length = 246
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
D R D R RP + G +++A GSA EFG T+V+ +V+GPRE ++ + +
Sbjct: 14 DGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRA 73
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L F+T R + + + S ++ +ALE ++ E FP+T +DVF VL++
Sbjct: 74 ALRVRYHMAPFSTDERKSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQAD 133
Query: 151 G 151
G
Sbjct: 134 G 134
>gi|147919675|ref|YP_686581.1| putative exosome complex exonuclease 1 [Methanocella arvoryzae
MRE50]
gi|110621977|emb|CAJ37255.1| putative exosome complex exonuclease 1 [Methanocella arvoryzae
MRE50]
Length = 253
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES--KKAMMYSN 91
VD R D RG RP F+ G + A GS Y EFG KV+ +V+GPRE + SN
Sbjct: 9 VDGKRLDGRGPFDLRPIKFQAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQQASN 68
Query: 92 -IGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
I R N++ +F+ R + G D + + S + +ALE I+ E +P++ +D+F +L
Sbjct: 69 AIVRYRYNMA--SFSVEERKRPGPDRRSIEISKVSREALESVILKELYPRSAIDIFVEIL 126
Query: 148 ES 149
++
Sbjct: 127 QA 128
>gi|312375907|gb|EFR23155.1| hypothetical protein AND_13423 [Anopheles darlingi]
Length = 246
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 8/121 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGR 94
LR D R ++ R + G + GSAY E GNTKV+ +V+GP + SKK+ I
Sbjct: 9 LRLDGRRANELRHIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQASSKKSNHEEAI-- 66
Query: 95 LNCNVSYTTFATPIRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESG 150
+NC S TF+T R + D K +H +AL AI +E +P++ +DV+ VL++
Sbjct: 67 VNCQYSMATFSTGERKKRPRGDRKSQEMTIHLKQALSAAIKMELYPRSQIDVYIEVLQAD 126
Query: 151 G 151
G
Sbjct: 127 G 127
>gi|84490039|ref|YP_448271.1| exosome complex exonuclease Rrp41 [Methanosphaera stadtmanae DSM
3091]
gi|84373358|gb|ABC57628.1| putative exosome complex, exonuclease 1 subunit [Methanosphaera
stadtmanae DSM 3091]
Length = 232
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+++R D R ++ R G +N+A GSAY E GN K++V V+GPRE K +
Sbjct: 4 EFIRKDGRAYNTLRNMKMEVGVLNNADGSAYIECGNNKILVGVYGPREIHSKKHSKPDGA 63
Query: 94 RLNCNVSYTTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L C + F+ R G + S ++ +A+ I LE +P+ ++D+ VLE+
Sbjct: 64 VLRCKYNMAPFSVKERKRPGPNRRSTEISKLISEAITPNIFLEKYPRASIDISIEVLEAE 123
Query: 151 G 151
G
Sbjct: 124 G 124
>gi|260834851|ref|XP_002612423.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
gi|229297800|gb|EEN68432.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
Length = 246
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK--AMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + +V+GP E +K + + +
Sbjct: 13 RIDGRRSSELRKVCARMGVFTQADGSAYIEQGNTKALATVYGPHEVRKGRGKIQHDRAVV 72
Query: 96 NCNVSYTTFATPIRG---QGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R +G ++ S L + E I+ E FP++ +D++ +L++ G
Sbjct: 73 NCQFSMATFSTGERKSRPKGDRRSQEMSMHLRQTFEAVIVTELFPRSQIDIYVQILQADG 132
>gi|410923699|ref|XP_003975319.1| PREDICTED: exosome complex component RRP41-like [Takifugu rubripes]
Length = 245
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR--L 95
R D R + R R G A GSAY E GNTKV+ V+GP E + + + R +
Sbjct: 13 RIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKVLAVVYGPHEMRGSRSRARHDRAVI 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + S L + E A++ + FP++ +D++ +L+S G
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVMTQLFPRSQIDIYVKILQSDG 132
>gi|57087309|ref|XP_546833.1| PREDICTED: exosome complex component MTR3 [Canis lupus familiaris]
Length = 272
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI------------GRL 95
RP + R G ++ A GSAY E G TKV+ +V GPR+++ + GRL
Sbjct: 37 RPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGSERGGGPAGAGGEAPAALRGRL 96
Query: 96 NCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C+ FA R G + ++ + L +ALE A+ L +P+ ++V AL+LE GG
Sbjct: 97 LCDFRRAPFAGRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGG 155
>gi|392334379|ref|XP_003753157.1| PREDICTED: exosome complex component MTR3 [Rattus norvegicus]
gi|392355042|ref|XP_003751927.1| PREDICTED: exosome complex component MTR3 [Rattus norvegicus]
Length = 272
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 16/144 (11%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP ++ D P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAAEEDET-PAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPIRG--QG-SDHKDFSSMLHKALE 127
++ GRL C+ F+ R QG S+ ++ L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGSSEDRELGLALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGG 151
A+ L +P+ ++V AL+LE GG
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGG 155
>gi|225454436|ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [Vitis vinifera]
gi|147867252|emb|CAN81194.1| hypothetical protein VITISV_022853 [Vitis vinifera]
gi|297745390|emb|CBI40470.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R GAV A GSA+ E GNTKVI +V+GPRE ++ S+
Sbjct: 7 EGLRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQQISDQA 66
Query: 94 RLNCNVSYTTFAT--PIRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C + F+T +R D + + S ++ + +E I+ P++ +D+F VL++
Sbjct: 67 LVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
Query: 150 GG 151
G
Sbjct: 127 DG 128
>gi|357512489|ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
gi|355501548|gb|AES82751.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
Length = 241
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ LR D R + R GAV+ A GSA E GNTKVI +V+GPRE + ++ S+
Sbjct: 7 EGLRSDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQQMSDKA 66
Query: 94 RLNCNVSYTTFAT--PIRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T +R D + + S ++ + +E I+ P++ +D++ VL++
Sbjct: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYVQVLQA 126
Query: 150 GG 151
G
Sbjct: 127 DG 128
>gi|328712784|ref|XP_001945013.2| PREDICTED: exosome complex exonuclease RRP41-like [Acyrthosiphon
pisum]
Length = 249
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGR 94
LR D R + R + G N GSAY E GNTKV+ +++GP E + +A ++
Sbjct: 9 LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTNRAKAPNDSAV 68
Query: 95 LNCNVSYTTFATPIRGQG-SDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
+NC S TF+ R + D+K LH +A+ AI + +PK+ +D+F VL+S G
Sbjct: 69 INCQYSMATFSRSERKRRPRDNKSAELTLHLKQAMATAIKTDLYPKSQIDIFVQVLQSDG 128
>gi|149038199|gb|EDL92559.1| rCG51656 [Rattus norvegicus]
Length = 252
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 16/144 (11%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP ++ D P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAAEEDET-PAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPIRG--QG-SDHKDFSSMLHKALE 127
++ GRL C+ F+ R QG S+ ++ L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGSSEDRELGLALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGG 151
A+ L +P+ ++V AL+LE GG
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGG 155
>gi|443900274|dbj|GAC77600.1| membrane coat complex Retromer, subunit VPS5/SNX1 [Pseudozyma
antarctica T-34]
Length = 290
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R + Q R F +T V SASGS+Y E G+ K+ SVFGPR+ K YS LN
Sbjct: 41 RPDGRAYTQLRSIFLQTNLVPSASGSSYVEIGDLKLACSVFGPRQV-KGRQYSGKAELNV 99
Query: 98 NVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V + F++ R Q KAL ++ L+ PK ++D+ +VL++ G
Sbjct: 100 EVKFAPFSSRRRRQPG----------KALLPSLRLDLLPKASLDIHIMVLQTDG 143
>gi|164660188|ref|XP_001731217.1| hypothetical protein MGL_1400 [Malassezia globosa CBS 7966]
gi|159105117|gb|EDP44003.1| hypothetical protein MGL_1400 [Malassezia globosa CBS 7966]
Length = 253
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RPD R + RP + +TG + SASGS E G+TK++ SV GPR+ + Y+ +N
Sbjct: 20 VRPDGRKAEEPRPLYLQTGIIPSASGSTLLESGHTKIVCSVHGPRQV-RGRHYAGKAEVN 78
Query: 97 CNVSYTTFATPIRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALVLES 149
F+ R D + ++++ +AL AI L+ PK+++DV VL+S
Sbjct: 79 VQFEMAPFSEKERRSSRDTEAPVPAALIQQALLPAIRLDLLPKSSIDVHITVLDS 133
>gi|390939121|ref|YP_006402859.1| exosome complex exonuclease 1 [Desulfurococcus fermentans DSM
16532]
gi|390192228|gb|AFL67284.1| exosome complex exonuclease 1 [Desulfurococcus fermentans DSM
16532]
Length = 242
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
D LR D R + RP G + +A+GSA E+GNTK + +V+GPRE+ K + +
Sbjct: 10 DGLRIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRA 69
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L F+T R + + + S ++ +ALE + FP+ ++DVF +L++
Sbjct: 70 ILRVRYHMAPFSTTERKSPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEILQAD 129
Query: 151 G 151
G
Sbjct: 130 G 130
>gi|46116870|ref|XP_384453.1| hypothetical protein FG04277.1 [Gibberella zeae PH-1]
Length = 283
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 12/140 (8%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT-------- 71
P T PP+F +D + +R + R + +TG SASGSAY E +
Sbjct: 10 PGGNTVPPVFE-ADESIVPRRTRAANGIRAQYLKTGVTPSASGSAYLEIESQDASGSKGM 68
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ +V Y FAT R + S +D SS L AL G
Sbjct: 69 KLTCTVHGPRSLPRSAPFSPHMVLSTHVKYAPFATRQRRGYLRDSSERDLSSHLEAALRG 128
Query: 129 AIILETFPKTTVDVFALVLE 148
AII + +PK+ VDV V+E
Sbjct: 129 AIIADRWPKSGVDVIVTVIE 148
>gi|350584883|ref|XP_003481840.1| PREDICTED: exosome complex component MTR3-like [Sus scrofa]
Length = 254
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 16/144 (11%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP D P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAVGEDE-EPAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALE 127
++ GRL C+ F+ R G + ++ + L +ALE
Sbjct: 72 AEGGERGGGPAGTGGEAPAALRGRLLCDFRRAPFSGRRRRAPPGGGEERELALALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGG 151
A+ L +P+ ++V AL+LE GG
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGG 155
>gi|294464242|gb|ADE77635.1| unknown [Picea sitchensis]
Length = 243
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ LR D R + R + G V+ A GSA E GNTKVI +V+GP E + K +
Sbjct: 7 EGLRLDGRRPLEMRQLHAQLGVVDKADGSAIFEMGNTKVIAAVYGPHEVQNKNQQLPDQA 66
Query: 94 RLNCNVSYTTFAT---PIRGQGSDHK-DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T P R +G + S ++ + +E I+ P+T +D+F VL++
Sbjct: 67 LVRCEYSMANFSTGDRPRRSKGDRRATEISLVIRQTMEATILTHLMPRTQIDIFVQVLQA 126
Query: 150 GG 151
G
Sbjct: 127 DG 128
>gi|242005051|ref|XP_002423388.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
corporis]
gi|212506432|gb|EEB10650.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
corporis]
Length = 253
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK---KAMMYSNIG 93
LR D R + R + G + GSAY E GNTKV+ +V+GP + + K ++ + +
Sbjct: 10 LRLDGRRASELRQIRCKLGVFSQPDGSAYIEMGNTKVLAAVYGPHQVRGRTKPLLDAAV- 68
Query: 94 RLNCNVSYTTFATPIRGQ---GSDHKDFSSM-LHKALEGAIILETFPKTTVDVFALVLES 149
+NC S F+T R + G SM L +AL AI E +PK+ +D+F VL+S
Sbjct: 69 -INCQYSSAVFSTEERKKRPRGDKKSQEKSMHLCQALSAAIKTELYPKSQIDIFVEVLQS 127
Query: 150 GG 151
G
Sbjct: 128 DG 129
>gi|357626143|gb|EHJ76339.1| putative exosome complex exonuclease RRP41 [Danaus plexippus]
Length = 214
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R ++ R + G GSAY E GNTKV+ +V+GP ++ K+ + +N
Sbjct: 12 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKSSAEGVVVN 71
Query: 97 CNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R ++ S L +AL AI E +P++ +D++ VL++ G
Sbjct: 72 CQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSQIDIYVEVLQADG 130
>gi|254168259|ref|ZP_04875105.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|197622768|gb|EDY35337.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 243
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSN 91
D + LR D R +Q RP G + A GSA+ E+G K+I +V+GP E+ K + ++
Sbjct: 9 DDNGLRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEAD 68
Query: 92 IGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ S F+ R + G D + + S ++ +ALE I +E +P+T++DV+ VL+
Sbjct: 69 RAIVRARYSMAPFSVDERKRPGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQ 128
Query: 149 S 149
+
Sbjct: 129 A 129
>gi|307200434|gb|EFN80643.1| Exosome complex exonuclease MTR3 [Harpegnathos saltator]
Length = 215
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 68 FGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA---TPIRGQGSDHKDFSSMLHK 124
GNTKVI SVF PRE Y G L C + F+ + Q ++ K++S +L +
Sbjct: 1 MGNTKVICSVFDPREVPNKTGYCVQGELYCEFKFAPFSYRKRKMHQQDAEEKEYSLVLQR 60
Query: 125 ALEGAIILETFPKTTVDVFALVLESGG 151
ALE A+ L FP VD++A VL++GG
Sbjct: 61 ALEPAVCLSEFPNFQVDIYATVLDNGG 87
>gi|284161628|ref|YP_003400251.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
gi|284011625|gb|ADB57578.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
Length = 244
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNI 92
V+ R D R F + RP G +N A GS Y E G KV+ +V+GPRE K + +
Sbjct: 8 VNGKRLDGRDFEELRPIKIEAGVLNRADGSCYLEMGGNKVVAAVYGPREVHPKHLEDPSK 67
Query: 93 GRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ S F+ R + G D + + S + +ALE I+ E FP++ +D+F VL++
Sbjct: 68 AIIRYRYSMAPFSVEERKRPGPDRRSIEISKVSREALEPVIMKELFPRSAIDIFVEVLQA 127
>gi|218884635|ref|YP_002429017.1| putative exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
gi|218766251|gb|ACL11650.1| Probable exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
Length = 242
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
D LR D R + RP G + +A+GSA E+GNTK + +V+GPRE+ K + +
Sbjct: 10 DGLRIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRA 69
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L F+T R + + + S ++ +ALE + FP+ ++DVF +L++
Sbjct: 70 ILRVRYHMAPFSTTERKSPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEILQAD 129
Query: 151 G 151
G
Sbjct: 130 G 130
>gi|402912105|ref|XP_003918628.1| PREDICTED: exosome complex component MTR3 [Papio anubis]
Length = 272
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 15/119 (12%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI------------GRL 95
RP + R G ++ A GSAY E G TKV+ +V GPR+++ GRL
Sbjct: 37 RPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGSGGEAPAALRGRL 96
Query: 96 NCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C+ FA R G + ++ + L +ALE A+ L +P+ ++V AL+LE GG
Sbjct: 97 LCDFRRAPFAGRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGG 155
>gi|383414445|gb|AFH30436.1| exosome complex component MTR3 [Macaca mulatta]
Length = 272
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 15/119 (12%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI------------GRL 95
RP + R G ++ A GSAY E G TKV+ +V GPR+++ GRL
Sbjct: 37 RPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGSGGEAPAALRGRL 96
Query: 96 NCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C+ FA R G + ++ + L +ALE A+ L +P+ ++V AL+LE GG
Sbjct: 97 LCDFRRAPFAGRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGG 155
>gi|296231558|ref|XP_002761078.1| PREDICTED: exosome complex component MTR3 [Callithrix jacchus]
Length = 271
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 15/119 (12%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI------------GRL 95
RP + R G ++ A GSAY E G TKV+ +V GPR+++ GRL
Sbjct: 37 RPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRL 96
Query: 96 NCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C+ FA R G + ++ + L +ALE A+ L +P+ ++V AL+LE GG
Sbjct: 97 LCDFRRAPFAGRRRRAPQGGGEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGG 155
>gi|289595860|ref|YP_003482556.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|289533647|gb|ADD07994.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 245
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSN 91
D + LR D R +Q RP G + A GSA+ E+G K+I +V+GP E+ K + ++
Sbjct: 11 DDNGLRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEAD 70
Query: 92 IGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ S F+ R + G D + + S ++ +ALE I +E +P+T++DV+ VL+
Sbjct: 71 RAIVRARYSMAPFSVDERKRPGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQ 130
Query: 149 S 149
+
Sbjct: 131 A 131
>gi|52550472|gb|AAU84321.1| ribonuclease PH [uncultured archaeon GZfos9D1]
Length = 245
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D RGF + RP G + A GS Y E GN KVI +V+GPRE + + +
Sbjct: 10 DGKRLDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMA 69
Query: 94 RLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ + F+T R + G D + + S + +A + I+ E +PK +DV+ +L+S
Sbjct: 70 VVKFRYNMAPFSTDDRKRPGPDRRSVEISKVCREAFDPVIMRELYPKMGIDVYVELLQS 128
>gi|52550028|gb|AAU83877.1| ribonuclease PH [uncultured archaeon GZfos34H10]
Length = 242
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R RGF + RP G + A GS Y E GN KVI V+GPRE + + +
Sbjct: 11 DGKRLSGRGFEELRPIKIEVGVLKRADGSCYFELGNNKVIAGVYGPREMHPRHFQNAKMA 70
Query: 94 RLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ + F+ R + G D + + S + KAL+ I+ E +PKT ++V+ VL+S
Sbjct: 71 VVKYRYNMAPFSVDDRKRPGPDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQS 129
>gi|342320046|gb|EGU11989.1| mRNA transport regulator 3 [Rhodotorula glutinis ATCC 204091]
Length = 270
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 4/118 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP F + G V A+GSAY E G TKV+ +V+GP+ + + ++ RLN
Sbjct: 35 RRDGRLAAQVRPIFLQPGLVTEAAGSAYIEAGRTKVLCAVYGPKPTPPSAPFNPKARLNV 94
Query: 98 NVSYTTFATPIR----GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + FA+ +R G+ ++ +++L ++L +++LET PK+ +D+F VLES G
Sbjct: 95 EIKFAPFASGVRRYVPGKDTEATGLAAVLQQSLLPSLLLETLPKSQIDLFVTVLESDG 152
>gi|239788290|dbj|BAH70834.1| ACYPI001085 [Acyrthosiphon pisum]
Length = 213
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGR 94
LR D R + R + G N GSAY E GNTKV+ +++GP E + +A ++
Sbjct: 9 LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTNRAKAPNDSAV 68
Query: 95 LNCNVSYTTFATPIRGQG-SDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
+NC S TF+ R + D+K LH +A+ AI + +PK+ +D+F VL+S G
Sbjct: 69 INCQYSMATFSRSERKRRPRDNKSAELTLHLKQAMATAIKTDLYPKSQIDIFVQVLQSDG 128
>gi|119719494|ref|YP_919989.1| exosome complex exonuclease 1 [Thermofilum pendens Hrk 5]
gi|119524614|gb|ABL77986.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermofilum pendens
Hrk 5]
Length = 245
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + R D R + RP G + +A GSAY E GN KV+ +V+GPRE + +
Sbjct: 11 DENGRRVDGRLPDEMRPLRVEAGVLKNADGSAYVELGNNKVLAAVYGPREPMPRHEALPD 70
Query: 92 IGRLNCNVSYTTFATPIRG--QGSDHK-DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L C S F+ R Q S + + S ++ +AL A+ L +P+T+++V+ +LE
Sbjct: 71 RAILKCRYSMLPFSVAERKSPQPSRREIELSKVIREALAPAVFLNEYPRTSIEVYIHILE 130
Query: 149 SGG 151
+ G
Sbjct: 131 ADG 133
>gi|383847639|ref|XP_003699460.1| PREDICTED: exosome complex component RRP41-like [Megachile
rotundata]
Length = 273
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 10/129 (7%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-- 90
D + LRPD R + R + G A GSAY E GNTK++V+V+GP + + + S
Sbjct: 9 DHNGLRPDGRRALELRQIRIKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRSTS 68
Query: 91 --NIGRLNCNVSYTTFATP----IRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDV 142
G +NC S F+ R D K + S L A+E I LE +P++ +D+
Sbjct: 69 KVTKGIVNCQYSMAVFSLSSGERKRKPRGDRKSQEKSLQLKHAMEAIIHLELYPRSQIDI 128
Query: 143 FALVLESGG 151
+ VL+ G
Sbjct: 129 YVEVLQVDG 137
>gi|195591661|ref|XP_002085557.1| GD12240 [Drosophila simulans]
gi|194197566|gb|EDX11142.1| GD12240 [Drosophila simulans]
Length = 327
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA-MMYSNIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P+E +A N+G LNC V++ F T
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFGT 107
Query: 107 -PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + SSML KALE + F +D+ L+L+ G
Sbjct: 108 GDLESVPERERHLSSMLTKALEPVVCRTEFLNFQLDIRVLILDDDG 153
>gi|62858329|ref|NP_001016436.1| exosome component 4 [Xenopus (Silurana) tropicalis]
gi|89273823|emb|CAJ82158.1| exosome component 4 [Xenopus (Silurana) tropicalis]
gi|111598409|gb|AAH80330.1| LOC549190 protein [Xenopus (Silurana) tropicalis]
Length = 249
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ M + +
Sbjct: 13 RVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSKMLHDRSVV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E AI+ + +P++ +D++ +L++ G
Sbjct: 73 NCQYSMATFSTGERKRRPHGDRKSSEMTLHLKQTFEAAILTQLYPRSQIDIYVQILQADG 132
>gi|295322007|pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322008|pdb|3M7N|E Chain E, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322009|pdb|3M7N|F Chain F, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322019|pdb|3M85|D Chain D, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322020|pdb|3M85|E Chain E, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322021|pdb|3M85|F Chain F, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 258
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS--- 90
VD LR D R F + RP + A GS Y E G KVI +VFGPRE +
Sbjct: 13 VDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSK 72
Query: 91 NIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
I R N++ F+ R + G D + + S + +A E I+ E FP++ +D+F VL
Sbjct: 73 AIIRYRYNMA--PFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVL 130
Query: 148 ES 149
++
Sbjct: 131 QA 132
>gi|224130470|ref|XP_002320845.1| predicted protein [Populus trichocarpa]
gi|118489833|gb|ABK96716.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222861618|gb|EEE99160.1| predicted protein [Populus trichocarpa]
Length = 241
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ LR D R + R + GAV A GSA E GNTKVI +V+GPRE + ++ ++
Sbjct: 7 EGLRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQA 66
Query: 94 RLNCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T R + D + + S ++ +A+E I+ P++ +D++ VL++
Sbjct: 67 LVRCEYSMANFSTGDRRRKPKGDRRSTEISLVIRQAMEECILTNLMPRSQIDIYVQVLQA 126
Query: 150 GG 151
G
Sbjct: 127 DG 128
>gi|320101499|ref|YP_004177091.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
gi|319753851|gb|ADV65609.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
Length = 243
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D LR D R + RP G + +A+GSA E+GNTK + +V+GPRE+ K + +
Sbjct: 11 DGLRVDGRRPDELRPVRIAIGVLKNANGSALVEYGNTKALAAVYGPREAMPKHISLPDRA 70
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L F+T R + + + S ++ +ALE + +P+ ++DVF +L++
Sbjct: 71 VLRVRYHMAPFSTSERKSPAPSRREIELSKVIREALESVVFTTQYPRASIDVFIEILQAD 130
Query: 151 G 151
G
Sbjct: 131 G 131
>gi|340377098|ref|XP_003387067.1| PREDICTED: exosome complex component RRP41-like [Amphimedon
queenslandica]
Length = 243
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 14/133 (10%)
Query: 28 IFSGSDVDWLRPDSRGFHQCRPAFFRTGAVN-----SASGSAYAEFGNTKVIVSVFGPRE 82
I S +D ++L P+ RP R + N A GSAY + GNT+VI +V+GP +
Sbjct: 4 ITSPADFEYLSPEGLRSDGRRPQELRVLSCNISHCLQADGSAYLQQGNTRVIATVYGPHD 63
Query: 83 SKKAMMYSNIGRLNCNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKT 138
++ + +NC S TF+T R + + S L K E AI+ +T+P +
Sbjct: 64 AQHDKAF-----INCQFSMATFSTSERKKRPTGDKSCLETSLALKKTFEAAILTDTYPHS 118
Query: 139 TVDVFALVLESGG 151
+D+F +L+S G
Sbjct: 119 KIDIFVQILQSDG 131
>gi|424819350|ref|ZP_18244459.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
gi|269986356|gb|EEZ92654.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4]
gi|326422442|gb|EGD71841.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
Length = 235
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R F + RP TG + +A GSA + GNT+ I +V+GP E K + + N G +
Sbjct: 5 RFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKVNKGIIV 64
Query: 97 CNVSYTTFATPIRGQ-GSDHKD--FSSMLHKALEGAIILETFPKTTVDV 142
C F+ P R + G D +D S ++ AL A+ILE P+ V+V
Sbjct: 65 CKYDMLPFSVPDRARPGMDRRDIEISQVITNALNRAVILEEMPRAMVNV 113
>gi|148228965|ref|NP_001088679.1| exosome component 4 [Xenopus laevis]
gi|56270437|gb|AAH87307.1| LOC495942 protein [Xenopus laevis]
Length = 249
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ M + +
Sbjct: 13 RVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSKMLHDRCVI 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E AI+ + +P++ +D++ +L++ G
Sbjct: 73 NCQYSMATFSTGERKRRPHGDRKSSEMTLHLKQTFEAAILTQLYPRSQIDIYVQILQADG 132
>gi|356573193|ref|XP_003554748.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
Length = 241
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ LR D R + R GAV+ A GSA E GNTKVI +V+GPRE + ++ S+
Sbjct: 7 EGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQQISSHA 66
Query: 94 RLNCNVSYTTFATPIRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C F+T R + S D + + S ++ + +E I+ P++ +D++ VL++
Sbjct: 67 LVRCEYCMANFSTGDRMRKSKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQA 126
Query: 150 GG 151
G
Sbjct: 127 DG 128
>gi|356562860|ref|XP_003549686.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
Length = 241
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ LR D R + R GAV+ A GSA E GNTKVI +V+GPRE + + S+
Sbjct: 7 EGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHA 66
Query: 94 RLNCNVSYTTFAT--PIRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T +R D + + S ++ + +E I+ P++ +D++ VL++
Sbjct: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQA 126
Query: 150 GG 151
G
Sbjct: 127 DG 128
>gi|195379434|ref|XP_002048484.1| GJ13996 [Drosophila virilis]
gi|194155642|gb|EDW70826.1| GJ13996 [Drosophila virilis]
Length = 329
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V PRE + + N+G +NC V++ FA+
Sbjct: 46 RSTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPRELVRSSARRVNMGVINCYVNFAAFAS 105
Query: 107 -PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ K SML KALE + F +D+ L+L+ G
Sbjct: 106 GELESVPEREKHLGSMLTKALEPLVCRNEFLNFQLDIRVLILDDDG 151
>gi|424819695|ref|ZP_18244762.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|326422491|gb|EGD71888.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 236
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R F++ RP TG V +A GSA GNT+ I +V+GP E K + + + G +
Sbjct: 5 RFDKRAFNELRPMEAETGVVPNAKGSARFRIGNTEAIAAVYGPEEVKPRHIEKVDRGVIV 64
Query: 97 CNVSYTTFATPIRGQ-GSDHKD--FSSMLHKALEGAIILETFPKTTVDV 142
C F+ P R + G D +D S ++ AL AIILE P+ ++V
Sbjct: 65 CKYDMLPFSVPDRAKPGMDRRDIEISQVITNALNRAIILEDMPRAMINV 113
>gi|11498104|ref|NP_069329.1| exosome complex exonuclease Rrp41 [Archaeoglobus fulgidus DSM 4304]
gi|29336576|sp|O29757.1|ECX1_ARCFU RecName: Full=Probable exosome complex exonuclease 1
gi|83754325|pdb|2BA0|F Chain F, Archaeal Exosome Core
gi|83754326|pdb|2BA0|E Chain E, Archaeal Exosome Core
gi|83754327|pdb|2BA0|D Chain D, Archaeal Exosome Core
gi|83754334|pdb|2BA1|D Chain D, Archaeal Exosome Core
gi|83754335|pdb|2BA1|E Chain E, Archaeal Exosome Core
gi|83754336|pdb|2BA1|F Chain F, Archaeal Exosome Core
gi|2650133|gb|AAB90744.1| ribonuclease PH (rph) [Archaeoglobus fulgidus DSM 4304]
Length = 258
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS--- 90
VD LR D R F + RP + A GS Y E G KVI +VFGPRE +
Sbjct: 13 VDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSK 72
Query: 91 NIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
I R N++ F+ R + G D + + S + +A E I+ E FP++ +D+F VL
Sbjct: 73 AIIRYRYNMA--PFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVL 130
Query: 148 ES 149
++
Sbjct: 131 QA 132
>gi|427781741|gb|JAA56322.1| Putative exosome component 4 [Rhipicephalus pulchellus]
Length = 246
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GN KV+ +V+GP E + ++ + + +
Sbjct: 13 RLDGRKPFEQRKIACRLGVFTQADGSAYIEQGNAKVLAAVYGPHEPRGSRSRSFHDRVLV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH +A E +I+ + +P++ +D+F VL+S G
Sbjct: 73 NCQFSMATFSTLERKRRPRGDKKSQEMTLHIQQAFEASILTQLYPRSQIDIFVEVLQSDG 132
>gi|255644780|gb|ACU22892.1| unknown [Glycine max]
Length = 190
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ LR D R + R GAV+ A GSA E GNTKVI +V+GPRE + + S+
Sbjct: 7 EGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHA 66
Query: 94 RLNCNVSYTTFAT--PIRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T +R D + + S ++ + +E I+ P++ +D++ VL++
Sbjct: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQA 126
Query: 150 GG 151
G
Sbjct: 127 DG 128
>gi|400600058|gb|EJP67749.1| 3' exoribonuclease [Beauveria bassiana ARSEF 2860]
Length = 283
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 12/140 (8%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF--------GNT 71
P+ T PP++ DV + +R + R + +TG SASGSAY EF
Sbjct: 10 PSGATVPPVYDDEDVVSTQ-RTRPANGIRAIYLKTGVTPSASGSAYLEFEPREGYSGSGM 68
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ +V Y FAT R + S +D S+ L AL G
Sbjct: 69 KLTCTVHGPRSLPRSAPFSPHMVLSTHVKYAPFATKQRRGYLRDSSERDLSTHLETALRG 128
Query: 129 AIILETFPKTTVDVFALVLE 148
+I + +PK+ VDV ++E
Sbjct: 129 TLIADRWPKSGVDVVVTIIE 148
>gi|378726312|gb|EHY52771.1| ribonuclease PH [Exophiala dermatitidis NIH/UT8656]
Length = 310
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Query: 20 PTRKTRPPIF--SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF--------- 68
P T PP+F S S D + R ++ R F +TG + SA+GSAY E
Sbjct: 10 PAGTTSPPVFAPSNSTKDLRQTRQRKPNELRKIFLQTGVIPSATGSAYLELECPPRPKAA 69
Query: 69 -----GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQG----SDHKDFS 119
K+ SV GP+ + +S +L+ +V + FAT +R QG S +D S
Sbjct: 70 ILNTSSTIKLSCSVHGPKPLPRTASFSPNLQLSASVKFAPFATRVR-QGYIRDSTERDIS 128
Query: 120 SMLHKALEGAIILETFPKTTVDVFALVLE 148
L AL+G II + +PK+ +D+ VLE
Sbjct: 129 MHLETALKGVIIPDRWPKSAIDIAVTVLE 157
>gi|225719528|gb|ACO15610.1| Exosome complex exonuclease MTR3 [Caligus clemensi]
Length = 274
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSN-IGRLNCNVSYTTF-- 104
RP F G + GSAY E G TKVI SVFGPRE K + +S+ G L+ T F
Sbjct: 52 RPLFCEVGVLTQCKGSAYIERGRTKVIASVFGPREVNKKLDFSSTTGILSVEYCETPFSS 111
Query: 105 ---ATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ ++ K+ S L + + L +PK+ +D+F VLE+ G
Sbjct: 112 SSSNRSSKSPSNEDKNISLFLAQTFRSTVCLHLYPKSRIDIFITVLENDG 161
>gi|452824943|gb|EME31943.1| exosome complex component MTR3, animal type [Galdieria sulphuraria]
Length = 264
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 13/117 (11%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR---ESKKAMMYSNIGRLNCNVSYTTF 104
R TG V A+GS Y E G TKVIV+V GPR + + + GR+ C V ++F
Sbjct: 33 RSLVLNTGTVVDAAGSGYVELGKTKVIVAVQGPRPPIRIRGGVENTMNGRITCEVVKSSF 92
Query: 105 ----------ATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
A RG + + S+ L + E +IL+ +PK ++D++ ++LE G
Sbjct: 93 CYYSYESTRMANVGRGVSEEERLLSTRLVRVFEPIVILDKYPKCSIDLYVVILEDDG 149
>gi|194751933|ref|XP_001958278.1| GF10840 [Drosophila ananassae]
gi|190625560|gb|EDV41084.1| GF10840 [Drosophila ananassae]
Length = 325
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA-MMYSNIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P E +A N+G +NC V++ FAT
Sbjct: 48 RKTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPHELMRASARRMNMGVINCYVNFAAFAT 107
Query: 107 -PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + SML KALE + F +D+ L+L+ G
Sbjct: 108 GELESVPERERHLGSMLTKALEPVVCRTEFLNFQLDIRVLILDDDG 153
>gi|52352385|gb|AAU43674.1| ribonuclease PH [uncultured archaeon GZfos26D8]
Length = 247
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D RGF + RP G + A GS Y E G+ KVI +V+GPRE + + +
Sbjct: 10 DGKRLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMA 69
Query: 94 RLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ + F+T R + G D + + S + +A + I+ E +PKT ++V+ +L+S
Sbjct: 70 VVKFRYNMAPFSTDDRKRPGPDRRSVEISKVCREAFDPVIMRELYPKTGIEVYVELLQS 128
>gi|62858563|ref|NP_001017016.1| exosome complex component MTR3 [Xenopus (Silurana) tropicalis]
gi|123892820|sp|Q28F19.1|EXOS6_XENTR RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|89269970|emb|CAJ81566.1| exosome component 6 [Xenopus (Silurana) tropicalis]
gi|134024282|gb|AAI36081.1| rarg protein [Xenopus (Silurana) tropicalis]
Length = 270
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGN--TKVIVSVFGPRESKKAMMYSNI-GRLNCN 98
RG + RP F R G ++ A GSAY E G+ TKV+ +V GPRE + GRL C+
Sbjct: 35 RGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLCD 94
Query: 99 VSYTTFAT--PIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + F+ P G G + L ++LE A+ L+ +P+ V V+ LVLE G
Sbjct: 95 LRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEVIVWVLVLEDRG 152
>gi|24667071|ref|NP_649157.1| Mtr3 [Drosophila melanogaster]
gi|7293727|gb|AAF49096.1| Mtr3 [Drosophila melanogaster]
gi|157816310|gb|ABV82149.1| FI01414p [Drosophila melanogaster]
Length = 326
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA-MMYSNIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P+E +A N+G LNC V++ F+T
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFST 107
Query: 107 -PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + SSML KA+E + F +D+ L+L+ G
Sbjct: 108 GDLDSVPERERHLSSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDG 153
>gi|432917028|ref|XP_004079428.1| PREDICTED: exosome complex component RRP41-like [Oryzias latipes]
Length = 244
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR--L 95
R D R + R R G A GSAY E GNTK + V+GP E + A + R +
Sbjct: 13 RLDGRKATELRKVQARMGVFAQADGSAYLEQGNTKALAVVYGPHEIRGARSRALHDRAII 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + S L + E A++ + +P++ +D++ +L+S G
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTQLYPRSQIDIYVKILQSDG 132
>gi|302348936|ref|YP_003816574.1| exosome complex exonuclease 1 [Acidilobus saccharovorans 345-15]
gi|302329348|gb|ADL19543.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
345-15]
Length = 242
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSN 91
D + R D R + RP + G +++A GSA +G TKV+ +V+GPRE +K + +
Sbjct: 10 DENGRRLDGRLPDEMRPVDMKVGVLSNADGSAIVSYGKTKVLAAVYGPREPLQKYTVLPD 69
Query: 92 IGRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L F+T R + S +L +ALE +I E FP+T ++V+ VL+
Sbjct: 70 RASLFVRYHMAPFSTEERKSPVPTRREVEISKVLREALEPVVITELFPRTVIEVYVEVLQ 129
Query: 149 SGG 151
S G
Sbjct: 130 SDG 132
>gi|158819077|ref|NP_001103659.1| exosome complex component MTR3 [Bos taurus]
gi|157743163|gb|AAI53218.1| EXOSC6 protein [Bos taurus]
Length = 272
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 17/147 (11%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFG 79
P P +++ + + P R + RP + R G ++ A GSAY E G TKV+ +V G
Sbjct: 11 PEESQPPQLYAAGEGE--EPAPRDPARLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSG 68
Query: 80 PRESKKAMMYSNI------------GRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHK 124
PR ++ GRL C+ F+ R G + ++ + L +
Sbjct: 69 PRPAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPPGGGEERELALALQE 128
Query: 125 ALEGAIILETFPKTTVDVFALVLESGG 151
ALE A+ L +P+ ++V AL+LE GG
Sbjct: 129 ALEPAVRLGRYPRAQLEVSALLLEDGG 155
>gi|326436033|gb|EGD81603.1| hypothetical protein PTSG_02318 [Salpingoeca sp. ATCC 50818]
Length = 221
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA 105
Q R F G V+ A GSA+ E GNTKV+ + +GP + + + L+C+V ++ F+
Sbjct: 37 QPRSVFAEVGVVSQAKGSAFFEIGNTKVVAACYGPLSTSRRQGFQETCILDCDVKFSPFS 96
Query: 106 TPIRGQGSD---HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
Q ++ S +L +L+ + + +PK+ + V+A VL+ G
Sbjct: 97 GVKHQQTKQTALERELSQLLESSLKPCVCVSKYPKSVIQVYATVLQDDG 145
>gi|350409108|ref|XP_003488612.1| PREDICTED: exosome complex component RRP41-like [Bombus impatiens]
Length = 270
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 32 SDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSN 91
D LRPD R + R + G A GSAY E GNTK++V+V+GP + + + +
Sbjct: 8 EDQSGLRPDGRRALELRQIRVKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRNT 67
Query: 92 I-GRLNCNVSYTTFATP----IRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFA 144
G +NC S F+ R D K + S L A+E I LE +P++ +D++
Sbjct: 68 TKGIVNCQYSMAVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLEIYPRSQIDIYV 127
Query: 145 LVLESGG 151
L+ G
Sbjct: 128 EALQVDG 134
>gi|195354294|ref|XP_002043633.1| GM15571 [Drosophila sechellia]
gi|194127801|gb|EDW49844.1| GM15571 [Drosophila sechellia]
Length = 327
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA-MMYSNIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P+E +A N+G LNC V++ F T
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLTIVAPPKELIRASARRMNMGVLNCYVNFAAFGT 107
Query: 107 -PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + SSML KALE + F +D+ L+L+ G
Sbjct: 108 GDLDSVPERERYLSSMLTKALEPVVCRTEFLNFQLDIRVLILDDDG 153
>gi|73669984|ref|YP_305999.1| exosome complex exonuclease 1 [Methanosarcina barkeri str. Fusaro]
gi|72397146|gb|AAZ71419.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosarcina barkeri
str. Fusaro]
Length = 501
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D LR D R + RP G ++ A GS Y E+G KV+V VFGPRE+ + ++
Sbjct: 12 DGLRLDGRHADEIRPMKIEIGVLSRADGSCYLEWGRNKVLVGVFGPREAHPRRSQRADTA 71
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ + +F+T R + + + S + +A E I+ E FPKT +D+F +L++
Sbjct: 72 VIRYKYNMASFSTEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEILQA 130
>gi|52549121|gb|AAU82970.1| ribonuclease PH [uncultured archaeon GZfos24D9]
Length = 242
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D R RGF + RP G + A GS Y E GN K + +V+GPRE + N R
Sbjct: 11 DGKRLSGRGFEELRPIKIEVGLLKRADGSCYFELGNNKALAAVYGPREM-HPRHFQNAKR 69
Query: 95 LNCNVSYTT--FATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
Y F+ R + G D + + S + KAL+ I+ E +PKT ++V+ VL+S
Sbjct: 70 AVVKYRYNMAPFSVDDRKRPGPDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQS 129
>gi|52549528|gb|AAU83377.1| ribonuclease PH [uncultured archaeon GZfos27G5]
Length = 247
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D RGF + RP G + A GS Y E GN KVI +V+GPRE + + + +
Sbjct: 13 RSDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVIK 72
Query: 97 CNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ F+T R + G D + + S + +A + I+ E +PK ++V+ +L+S
Sbjct: 73 FRYNMAPFSTDDRKRPGPDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQS 128
>gi|348501208|ref|XP_003438162.1| PREDICTED: exosome complex component RRP41-like [Oreochromis
niloticus]
Length = 245
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RLDGRKATELRKLQARMGVFTQADGSAYLEQGNTKALAVVYGPHEMRGSRSRTLHDRAVI 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + S L + E A++ + +P++ +D++ +L+S G
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVMTQLYPRSQIDIYVKILQSDG 132
>gi|357625482|gb|EHJ75909.1| putative exosome complex exonuclease RRP41 [Danaus plexippus]
Length = 251
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG-RL 95
LR D R ++ R + G GSAY E GNTKV+ +V+GP + ++ S G +
Sbjct: 12 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQVRRFRKSSAEGVVV 71
Query: 96 NCNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R ++ S L +AL AI E +P++ +D++ VL++ G
Sbjct: 72 NCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSQIDIYVEVLQADG 131
>gi|15897636|ref|NP_342241.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus P2]
gi|29337007|sp|Q9UXC2.1|ECX1_SULSO RecName: Full=Probable exosome complex exonuclease 1
gi|71042717|pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome
gi|71042719|pdb|2BR2|D Chain D, Rnase Ph Core Of The Archaeal Exosome
gi|71042721|pdb|2BR2|F Chain F, Rnase Ph Core Of The Archaeal Exosome
gi|71042723|pdb|2BR2|H Chain H, Rnase Ph Core Of The Archaeal Exosome
gi|71042725|pdb|2BR2|J Chain J, Rnase Ph Core Of The Archaeal Exosome
gi|71042727|pdb|2BR2|L Chain L, Rnase Ph Core Of The Archaeal Exosome
gi|71042729|pdb|2BR2|N Chain N, Rnase Ph Core Of The Archaeal Exosome
gi|71042731|pdb|2BR2|P Chain P, Rnase Ph Core Of The Archaeal Exosome
gi|71042733|pdb|2BR2|R Chain R, Rnase Ph Core Of The Archaeal Exosome
gi|71042735|pdb|2BR2|T Chain T, Rnase Ph Core Of The Archaeal Exosome
gi|71042737|pdb|2BR2|V Chain V, Rnase Ph Core Of The Archaeal Exosome
gi|71042739|pdb|2BR2|X Chain X, Rnase Ph Core Of The Archaeal Exosome
gi|83754539|pdb|2C37|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754541|pdb|2C37|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754543|pdb|2C37|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754545|pdb|2C37|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754547|pdb|2C37|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754549|pdb|2C37|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754551|pdb|2C37|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754553|pdb|2C37|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754555|pdb|2C37|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754557|pdb|2C37|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754559|pdb|2C37|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754561|pdb|2C37|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754563|pdb|2C38|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754565|pdb|2C38|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754567|pdb|2C38|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754569|pdb|2C38|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754571|pdb|2C38|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754573|pdb|2C38|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754575|pdb|2C38|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754577|pdb|2C38|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754579|pdb|2C38|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754581|pdb|2C38|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754583|pdb|2C38|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754585|pdb|2C38|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754587|pdb|2C39|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754589|pdb|2C39|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754591|pdb|2C39|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754593|pdb|2C39|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754595|pdb|2C39|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754597|pdb|2C39|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754599|pdb|2C39|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754601|pdb|2C39|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754603|pdb|2C39|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754605|pdb|2C39|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754607|pdb|2C39|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754609|pdb|2C39|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|6015742|emb|CAB57569.1| ribonuclease PH [Sulfolobus solfataricus P2]
gi|13813903|gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus P2]
Length = 248
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D R + R G + +A GSA E GNTK I +V+GP+E + + +
Sbjct: 16 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 75
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
L T F+T R + + + S ++ +ALE A+++E FP+T +DVF +L++
Sbjct: 76 VLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 134
>gi|340712754|ref|XP_003394920.1| PREDICTED: exosome complex component RRP41-like isoform 1 [Bombus
terrestris]
Length = 270
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 32 SDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSN 91
D LRPD R + R + G A GSAY E GNTK++V+V+GP + + + +
Sbjct: 8 EDQSGLRPDGRRALELRQIRVKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRNT 67
Query: 92 I-GRLNCNVSYTTFATP----IRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFA 144
G +NC S F+ R D K + S L A+E I LE +P++ +D++
Sbjct: 68 TKGIVNCQYSMAVFSLSSGERKRRPRGDRKSQERSLQLKHAMEAIIHLEIYPRSQIDIYV 127
Query: 145 LVLESGG 151
L+ G
Sbjct: 128 EALQVDG 134
>gi|20093819|ref|NP_613666.1| exosome complex exonuclease Rrp41 [Methanopyrus kandleri AV19]
gi|29336819|sp|Q8TYC1.1|ECX1_METKA RecName: Full=Probable exosome complex exonuclease 1
gi|19886742|gb|AAM01596.1| Predicted exosome subunit, RNase PH [Methanopyrus kandleri AV19]
Length = 239
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKKAMMYSN 91
D LR D R + RP + G + A GSAY E G K++ +V+GPRE K
Sbjct: 12 DGLRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRA 71
Query: 92 IGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ R N++ F+ R + G D + + S + +ALE AI E +P+T +D+F VL+
Sbjct: 72 VVRFRYNMA--PFSVDERKRPGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVLQ 129
Query: 149 S 149
+
Sbjct: 130 A 130
>gi|385773349|ref|YP_005645915.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
gi|323477463|gb|ADX82701.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
Length = 245
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D R + R G + +A GSA E GNTK I +V+GP+E + + +
Sbjct: 13 DGKRIDGRKPEELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 72
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
L T F+T R + + + S ++ +ALE A+++E FP+T +DVF +L++
Sbjct: 73 VLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 131
>gi|195496098|ref|XP_002095549.1| GE22455 [Drosophila yakuba]
gi|194181650|gb|EDW95261.1| GE22455 [Drosophila yakuba]
Length = 328
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA-MMYSNIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P+E +A N+G LNC V++ FAT
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFAT 107
Query: 107 -PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + SML KA+E + F +D+ L+L+ G
Sbjct: 108 GDLDSVPERERHLGSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDG 153
>gi|52548652|gb|AAU82501.1| ribonuclease PH [uncultured archaeon GZfos18B6]
Length = 242
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R RGF + RP G + A GS Y E GN K I +V+GPRE + + +
Sbjct: 11 DGKRLSGRGFEELRPIKIDVGVLKRADGSCYFELGNNKAIAAVYGPREMHPRHFQNAKMA 70
Query: 94 RLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ + F+ R + G D + + S + KAL+ I+ E +PKT ++V+ VL+S
Sbjct: 71 VVKYRYNMAPFSVDDRKRPGPDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQS 129
>gi|126031138|pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome
gi|145579801|pdb|2JEA|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
gi|145579805|pdb|2JEB|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
gi|407943802|pdb|4BA1|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
gi|407943805|pdb|4BA2|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
Length = 250
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D R + R G + +A GSA E GNTK I +V+GP+E + + +
Sbjct: 18 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 77
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
L T F+T R + + + S ++ +ALE A+++E FP+T +DVF +L++
Sbjct: 78 VLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 136
>gi|367022270|ref|XP_003660420.1| hypothetical protein MYCTH_74015 [Myceliophthora thermophila ATCC
42464]
gi|347007687|gb|AEO55175.1| hypothetical protein MYCTH_74015 [Myceliophthora thermophila ATCC
42464]
Length = 285
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 68/143 (47%), Gaps = 14/143 (9%)
Query: 20 PTRKTRPPIFSGSDVDWLRP---DSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT----- 71
P T PPI+ SD+ R SR + R F +TG SASGSAY E +
Sbjct: 10 PAGATIPPIYDDSDLQEPRSAKGRSRAPNASRKMFLKTGVTPSASGSAYLEMETSATPGV 69
Query: 72 ---KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKA 125
K+ SV GPR ++ +S L+ +V Y FAT R + +D L A
Sbjct: 70 SGLKLSCSVHGPRSLPRSAPFSPHIILSTHVKYAPFATKQRRGYLRDPSERDLGIHLETA 129
Query: 126 LEGAIILETFPKTTVDVFALVLE 148
L GAII + +PK+ VD+ ++E
Sbjct: 130 LRGAIIADRWPKSGVDIIVSIVE 152
>gi|432328765|ref|YP_007246909.1| archaeal exosome-like complex exonuclease 1 [Aciduliprofundum sp.
MAR08-339]
gi|432135474|gb|AGB04743.1| archaeal exosome-like complex exonuclease 1 [Aciduliprofundum sp.
MAR08-339]
Length = 246
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSN 91
D + LR D R +Q RP G + A GSAY E+G K++ +V+GP E+ K + ++
Sbjct: 11 DDNGLRIDGRLPNQLRPIKMEVGVLERADGSAYIEWGGNKIMAAVYGPHEAYPKHVQEAD 70
Query: 92 IGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ S F+ R + G D + + S ++ +AL I +E +P+T++DV+ VL+
Sbjct: 71 RAIVRARYSMAPFSVDERKRPGPDRRSIELSKVISEALTSVIFVEKYPRTSIDVYIEVLQ 130
Query: 149 S 149
+
Sbjct: 131 A 131
>gi|284174962|ref|ZP_06388931.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus 98/2]
gi|384434251|ref|YP_005643609.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
gi|299689089|pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689092|pdb|3L7Z|E Chain E, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689095|pdb|3L7Z|H Chain H, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|261602405|gb|ACX92008.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
Length = 245
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D R + R G + +A GSA E GNTK I +V+GP+E + + +
Sbjct: 13 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 72
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
L T F+T R + + + S ++ +ALE A+++E FP+T +DVF +L++
Sbjct: 73 VLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 131
>gi|195476691|ref|XP_002086206.1| GE23007 [Drosophila yakuba]
gi|194185996|gb|EDW99607.1| GE23007 [Drosophila yakuba]
Length = 328
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA-MMYSNIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P+E +A N+G LNC V++ FAT
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFAT 107
Query: 107 -PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + SML KA+E + F +D+ L+L+ G
Sbjct: 108 GDLDSVPERERHLGSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDG 153
>gi|346326140|gb|EGX95736.1| 3' exoribonuclease [Cordyceps militaris CM01]
Length = 283
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF--------GNT 71
P+ T PP++ D+ + SR R + +TG SASGSAY EF
Sbjct: 10 PSGATVPPVYDDEDLVSTQ-RSRPETGIRAIYLKTGVTPSASGSAYLEFEPREGSSGSGM 68
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ +V Y FAT R + S +D S+ L AL G
Sbjct: 69 KLTCTVHGPRSLPRSAPFSPHMVLSTHVKYAPFATKQRRGYLRDSSERDLSTHLETALRG 128
Query: 129 AIILETFPKTTVDVFALVLE 148
+I + +PK+ VDV ++E
Sbjct: 129 TLIADRWPKSGVDVIVTIIE 148
>gi|225559339|gb|EEH07622.1| 3' exoribonuclease [Ajellomyces capsulatus G186AR]
Length = 350
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 30/159 (18%)
Query: 20 PTRKTRPPIFSGS--------DVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF-- 68
P TRPP+F+ S V RP +R H+ R F +TG + SASGSAY EF
Sbjct: 10 PPAGTRPPVFASSLLSSDGQHCVALERPVRTRKQHELRRIFLKTGLIPSASGSAYLEFQP 69
Query: 69 ----------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFAT-PIRGQ 111
+ K+I S+ GP+ ++ +S L+ +V + FA+ RG
Sbjct: 70 SSFIPRSKLKTLIPPSSSLKLICSIHGPKPLPRSAPFSPNLLLSTHVKFAPFASRRRRGH 129
Query: 112 GSD--HKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
D +D L AL GAII E +PK+ +D+ VLE
Sbjct: 130 IRDVNERDLGVHLETALRGAIIAERWPKSGLDITVTVLE 168
>gi|327400938|ref|YP_004341777.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
gi|327316446|gb|AEA47062.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
Length = 246
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS--- 90
VD R D R F + RP G + A GS Y E G K++ +V+GPRE +
Sbjct: 10 VDGKRLDGRDFDELRPIKIEAGVLRRADGSCYIEMGKNKIVAAVYGPREVHPRHLQDPSR 69
Query: 91 NIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
I R N++ F+ R + G D + + S + +ALE I+ E FP++ +D+F VL
Sbjct: 70 AIIRYRYNMA--PFSVEERKKPGPDRRSIEISKVSREALEPVILKELFPRSGIDIFVEVL 127
Query: 148 ES 149
++
Sbjct: 128 QA 129
>gi|227827677|ref|YP_002829457.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.14.25]
gi|238619848|ref|YP_002914674.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.4]
gi|227459473|gb|ACP38159.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.14.25]
gi|238380918|gb|ACR42006.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.4]
Length = 245
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D R + R G + +A GSA E GNTK I +V+GP+E + + +
Sbjct: 13 DGKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 72
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
L T F+T R + + + S ++ +ALE A+++E FP+T +DVF +L++
Sbjct: 73 VLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 131
>gi|227830374|ref|YP_002832154.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus L.S.2.15]
gi|229579192|ref|YP_002837590.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.G.57.14]
gi|229582056|ref|YP_002840455.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.N.15.51]
gi|284997880|ref|YP_003419647.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
gi|227456822|gb|ACP35509.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.S.2.15]
gi|228009906|gb|ACP45668.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.G.57.14]
gi|228012772|gb|ACP48533.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.N.15.51]
gi|284445775|gb|ADB87277.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
Length = 245
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D R + R G + +A GSA E GNTK I +V+GP+E + + +
Sbjct: 13 DGKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 72
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
L T F+T R + + + S ++ +ALE A+++E FP+T +DVF +L++
Sbjct: 73 VLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 131
>gi|229584881|ref|YP_002843383.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.27]
gi|228019931|gb|ACP55338.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.27]
Length = 245
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 25 RPPIF--SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
RP + G +D +PD + R G + +A GSA E GNTK I +V+GP+E
Sbjct: 6 RPKLILEDGKRIDGRKPD-----ELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKE 60
Query: 83 SK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKT 138
+ + + L T F+T R + + + S ++ +ALE A+++E FP+T
Sbjct: 61 MHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRT 120
Query: 139 TVDVFALVLES 149
+DVF +L++
Sbjct: 121 AIDVFTEILQA 131
>gi|385775987|ref|YP_005648555.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
gi|323474735|gb|ADX85341.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
Length = 245
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D R + R G + +A GSA E GNTK I +V+GP+E + + +
Sbjct: 13 DGKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 72
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
L T F+T R + + + S ++ +ALE A+++E FP+T +DVF +L++
Sbjct: 73 VLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 131
>gi|149430580|ref|XP_001515504.1| PREDICTED: exosome complex component RRP41-like [Ornithorhynchus
anatinus]
Length = 245
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RVDGRRAGELRKIEARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGLRSRALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + S L + E AI+ + +P++ +D++ +L++ G
Sbjct: 73 NCQFSMATFSTGERKRRPHGDRKATEMSQHLQQTFEDAILTQLYPRSQIDIYVQILQADG 132
>gi|195128573|ref|XP_002008737.1| GI13661 [Drosophila mojavensis]
gi|193920346|gb|EDW19213.1| GI13661 [Drosophila mojavensis]
Length = 329
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTK++ V PRE ++ + ++G +NC V++ FAT
Sbjct: 46 RSTFIRAGVLTTVRGSAYMEYGNTKLMAIVAPPRELVRSSAHRVSMGVINCYVNFAAFAT 105
Query: 107 -PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ K SML KALE + F +D+ L+L+ G
Sbjct: 106 GDLESVPEREKHLGSMLTKALEPLVCRNEFLNFQLDIRVLILDDDG 151
>gi|255579328|ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
gi|223529966|gb|EEF31893.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
Length = 241
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ LR D R + R + GAV+ A GSA E GNTKVI +V+GPRE + ++ +
Sbjct: 7 EGLRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQQIIDQA 66
Query: 94 RLNCNVSYTTFAT--PIRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C + F+T +R D + + S ++ + +E I+ P++ +D++ VL++
Sbjct: 67 LVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYVQVLQA 126
Query: 150 GG 151
G
Sbjct: 127 DG 128
>gi|157133589|ref|XP_001656263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|157134369|ref|XP_001663263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|108870517|gb|EAT34742.1| AAEL013045-PA [Aedes aegypti]
gi|108870766|gb|EAT34991.1| AAEL012812-PA [Aedes aegypti]
Length = 245
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNI 92
+ LR D R ++ R + G + GSAY E GNTKV+ +V+GP + +KK+ I
Sbjct: 7 EGLRLDGRRANELRRIQCKLGVFSQPDGSAYIEQGNTKVLAAVYGPHQAPAKKSSHEEVI 66
Query: 93 GRLNCNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+NC S TF+T R + ++ + L +AL AI E +PK+ +DV+ VL
Sbjct: 67 --VNCQYSMATFSTGERKRRPRGDRKSQEMTIHLQQALSAAIKTELYPKSQIDVYIEVLM 124
Query: 149 SGG 151
+ G
Sbjct: 125 ADG 127
>gi|240282271|gb|EER45774.1| 3' exoribonuclease [Ajellomyces capsulatus H143]
Length = 350
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 30/159 (18%)
Query: 20 PTRKTRPPIFSGS--------DVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF-- 68
P TRPP+F+ S V RP +R H+ R F +TG + SASGSAY EF
Sbjct: 10 PPGGTRPPVFASSLLSSDGQHCVALERPIRTRKQHELRRIFLKTGLIPSASGSAYLEFQP 69
Query: 69 ----------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG-- 110
+ K+I S+ GP+ ++ +S L+ +V + FA+ R
Sbjct: 70 SSFIARSKLKTLIPPSSSLKLICSIHGPKPLPRSAPFSPNLLLSTHVKFAPFASRRRRGN 129
Query: 111 -QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ + +D L AL GAII E +PK+ +D+ VLE
Sbjct: 130 IRDVNERDLGVHLETALRGAIIAERWPKSGLDITVTVLE 168
>gi|325088410|gb|EGC41720.1| 3' exoribonuclease [Ajellomyces capsulatus H88]
Length = 350
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 30/159 (18%)
Query: 20 PTRKTRPPIFSGS--------DVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF-- 68
P TRPP+F+ S V RP +R H+ R F +TG + SASGSAY EF
Sbjct: 10 PPGGTRPPVFASSLLSSDGQHCVALERPVRTRKQHELRRIFLKTGLIPSASGSAYLEFQP 69
Query: 69 ----------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG-- 110
+ K+I S+ GP+ ++ +S L+ +V + FA+ R
Sbjct: 70 SSFIARSKLKTLIPPSSSLKLICSIHGPKPLPRSAPFSPNLLLSTHVKFAPFASRRRRGN 129
Query: 111 -QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ + +D L AL GAII E +PK+ +D+ VLE
Sbjct: 130 IRDVNERDLGVHLETALRGAIIAERWPKSGLDITVTVLE 168
>gi|195020230|ref|XP_001985151.1| GH16904 [Drosophila grimshawi]
gi|193898633|gb|EDV97499.1| GH16904 [Drosophila grimshawi]
Length = 331
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTK++ V PRE + + N+G LNC V++ FA+
Sbjct: 46 RSTFIRAGVLTTVRGSAYMEYGNTKMMAIVAPPRELVRSSAGRVNMGVLNCYVNFAAFAS 105
Query: 107 -PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ K SML KALE + F +D+ L+L+ G
Sbjct: 106 GELASLPEREKHLGSMLTKALEPLVCRNEFLNFQLDIRVLILDDDG 151
>gi|346466185|gb|AEO32937.1| hypothetical protein [Amblyomma maculatum]
Length = 284
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR--L 95
R D R + R R G A GSAY E GN KV+ +V+GP E + + S R +
Sbjct: 51 RLDGRKPSEQRKIACRLGVFGQADGSAYIEQGNAKVLAAVYGPHEPRGSRSRSFHDRVIV 110
Query: 96 NCNVSYTTFATPIRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH +A E +I+ + +P++ +D+F L+S G
Sbjct: 111 NCQFSMATFSTLERKRRPRGDKKSQEMTLHIQQAFEASILTQLYPRSQIDIFVETLQSDG 170
>gi|213514504|ref|NP_001134304.1| Exosome complex exonuclease RRP41 [Salmo salar]
gi|209732228|gb|ACI66983.1| Exosome complex exonuclease RRP41 [Salmo salar]
Length = 245
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGSRSKTLHDRAVI 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + S L + E A++ +P++ +D++ +L+S G
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKILQSDG 132
>gi|225715268|gb|ACO13480.1| Exosome complex exonuclease RRP41 [Esox lucius]
Length = 245
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RLDGRKATELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRMSRSKTLHDRAVI 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + S L + E A++ +P++ +D++ +L+S G
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKILQSDG 132
>gi|194874459|ref|XP_001973402.1| GG13362 [Drosophila erecta]
gi|190655185|gb|EDV52428.1| GG13362 [Drosophila erecta]
Length = 319
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA-MMYSNIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P+E +A N+G LNC V++ FA+
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELLRASARRMNMGVLNCYVNFAAFAS 107
Query: 107 -PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + S ML KA+E + F +D+ L+L+ G
Sbjct: 108 GDLDSVTERERHLSGMLTKAMEPVVCRTEFLNFQLDIRVLILDDDG 153
>gi|159040754|ref|YP_001540006.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
gi|157919589|gb|ABW01016.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
Length = 242
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
D R D R + RP + G + +A+GSA +GNT V+ +V+GPRE + + +
Sbjct: 12 DGKRVDGRLPEEHRPVTMQVGVLPNANGSALVAYGNTVVLAAVYGPREPIPRYITVPDKA 71
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ F+T R + + + S ++ +ALE + LE +PK+T+DVF VL++
Sbjct: 72 VVRVRYHMAPFSTDDRKNPAPTRREIEISKVVKQALETVVFLEQYPKSTIDVFLEVLQAD 131
Query: 151 G 151
G
Sbjct: 132 G 132
>gi|328777661|ref|XP_003249381.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Apis
mellifera]
Length = 284
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 18 IDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
I + K + + D + LR D R + R + G A GSAY E GNTK++V+V
Sbjct: 10 IKISEKKMIEVENIEDQNGLRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTV 69
Query: 78 FGPRESKKAMMYS----NIGRLNCNVSYTTFATP----IRGQGSDHK--DFSSMLHKALE 127
+GP + + + S G +NC S F+ R D K + S L A+E
Sbjct: 70 YGPHQPRNSTGRSTSKITKGIVNCQYSMAVFSLSSGERKRKPRGDRKSQERSLQLKHAME 129
Query: 128 GAIILETFPKTTVDVFALVLESGG 151
I LE +P++ +D++ L+ G
Sbjct: 130 AIIHLELYPRSQIDIYVEALQVDG 153
>gi|52548823|gb|AAU82672.1| ribonuclease PH [uncultured archaeon GZfos19A5]
Length = 247
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D RGF + RP G + A GS Y E G+ KVI +V+GPRE + + +
Sbjct: 10 DGKRLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMA 69
Query: 94 RLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ + F+T R + G D + + S + +A + I+ E +PK ++V+ +L+S
Sbjct: 70 VVKFRYNMAPFSTDDRKRPGPDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQS 128
>gi|21228725|ref|NP_634647.1| exosome complex exonuclease 1 [Methanosarcina mazei Go1]
gi|29336795|sp|Q8PTT8.1|ECX1_METMA RecName: Full=Probable exosome complex exonuclease 1
gi|20907234|gb|AAM32319.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 493
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES---KKAMMYSN 91
D LR D R + RP G ++ A GS Y E+G K++V VFGPRE+ + S
Sbjct: 14 DGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSA 73
Query: 92 IGRLNCNVSYTTFATPIR-GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ R N++ + R G + S + +A E I+ E FPKT +D+F VL++
Sbjct: 74 VIRYRYNMASFSVEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQA 132
>gi|307214803|gb|EFN89690.1| Exosome complex exonuclease RRP41 [Harpegnathos saltator]
Length = 271
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 17/127 (13%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-- 94
LR D R + R R G A GSAY E GNTKV+ +V+GP + + +NI +
Sbjct: 13 LRVDGRRALELRQIRIRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPR-----NNIAKNT 67
Query: 95 ----LNCNVSYTTFA-----TPIRGQGS-DHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+NC S F+ R +G ++ S L A+E I LE +P++ +D+F
Sbjct: 68 TKAIVNCQYSMAVFSFTSGERKRRPRGDWKSQERSIQLRHAMEAIIHLELYPRSQIDIFV 127
Query: 145 LVLESGG 151
+L+ G
Sbjct: 128 EILQVDG 134
>gi|380015549|ref|XP_003691763.1| PREDICTED: exosome complex component RRP41-like [Apis florea]
Length = 271
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 32 SDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS- 90
D + LR D R + R + G A GSAY E GNTK++V+V+GP + + + S
Sbjct: 8 EDQNGLRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQPRNSTGRST 67
Query: 91 ---NIGRLNCNVSYTTFATP----IRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVD 141
G +NC S F+ R D K + S L A+E I LE +P++ +D
Sbjct: 68 SKVTKGIVNCQYSMAVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLELYPRSQID 127
Query: 142 VFALVLESGG 151
++ L+ G
Sbjct: 128 IYVEALQVDG 137
>gi|221504332|gb|EEE30007.1| 3' exoribonuclease, putative [Toxoplasma gondii VEG]
Length = 303
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R F + R +T ++ +A+GSA+ G TK+ +V+GPR + K + G +N
Sbjct: 47 RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMK-HASQDRGSINL 105
Query: 98 NVSYTTFATPIRGQGS--DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ FAT + S D +++LH+AL + L+ + K+T+ V LVLE G
Sbjct: 106 EFRFAPFATTGKDACSERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLEDDG 161
>gi|237841089|ref|XP_002369842.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
gi|211967506|gb|EEB02702.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
gi|221483644|gb|EEE21956.1| 3' exoribonuclease, putative [Toxoplasma gondii GT1]
Length = 303
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R F + R +T ++ +A+GSA+ G TK+ +V+GPR + K + G +N
Sbjct: 47 RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMK-HASQDRGSINL 105
Query: 98 NVSYTTFATPIRGQGS--DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ FAT + S D +++LH+AL + L+ + K+T+ V LVLE G
Sbjct: 106 EFRFAPFATTGKDACSERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLEDDG 161
>gi|225709136|gb|ACO10414.1| Exosome complex exonuclease RRP41 [Caligus rogercresseyi]
Length = 246
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 9/124 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVN-SASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR- 94
LR D R + R R GA + SA GSAY E GNTKV+ +V+GPRE + N +
Sbjct: 9 LRLDGRKSDELRRLRCRLGAFSWSADGSAYLEMGNTKVLAAVYGPREPRGGSSGDNSNKE 68
Query: 95 ---LNCNVSYTTFATPIRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
LN S F+T R Q D + + ++ L + I E +P++ +D+F VL
Sbjct: 69 EAILNVQFSSAAFSTAERKQRQRGDKRSLEMAAHLKQTFAACIQTELYPRSQIDIFVEVL 128
Query: 148 ESGG 151
++ G
Sbjct: 129 QTDG 132
>gi|241119397|ref|XP_002402568.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
gi|215493342|gb|EEC02983.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
Length = 246
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R ++ R R G + A GSAY E GN KV+ +V+GP E + ++ + +
Sbjct: 13 RLDGRKPNEQRKIDCRLGVFSQADGSAYIEQGNAKVLAAVYGPHEPRGNRSRALHDRVLV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E I+ + +P++ +D+F VL+S G
Sbjct: 73 NCQFSMATFSTFERKRRPRGDKKSQEMTLHIQQTFEATILTQLYPRSQIDIFVEVLQSDG 132
>gi|170070082|ref|XP_001869459.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
gi|167866003|gb|EDS29386.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
Length = 245
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
+ LR D R ++ R + G + GSAY E GNTKV+ +V+GP ++
Sbjct: 7 EGLRLDGRRSNELRRIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQAPAKKSNHEECV 66
Query: 95 LNCNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+NC S TF+T R + ++ + L +AL AI + +PK+ +DV+ VL +
Sbjct: 67 VNCQYSMATFSTGERKKRPRGDRKSQEMTIHLQQALSAAIKTDLYPKSQIDVYIEVLMAD 126
Query: 151 G 151
G
Sbjct: 127 G 127
>gi|302891493|ref|XP_003044628.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256725553|gb|EEU38915.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 283
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 12/140 (8%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT-------- 71
P T PP++ +D + +R + R + RTG SASGSAY E +
Sbjct: 10 PGGVTIPPVYE-ADESSVTSRTRPPNGVRSQYLRTGVTASASGSAYLEIESQDASGSKGM 68
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ +V Y FAT R + + +D SS L AL G
Sbjct: 69 KLTCTVHGPRSLPRSAPFSPHMVLSTHVKYAPFATRQRRGYLRDASERDLSSHLEAALRG 128
Query: 129 AIILETFPKTTVDVFALVLE 148
A+I + +PK+ VDV ++E
Sbjct: 129 ALIADRWPKSGVDVIVTIVE 148
>gi|330803994|ref|XP_003289985.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
gi|325079933|gb|EGC33511.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
Length = 247
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R ++ R + G N A GSAY E GNTK+I +V+GPRE S +
Sbjct: 10 EGLRIDGRRANELRRINIQMGVSNRADGSAYYEQGNTKIIAAVYGPREISVSGQSIFDRA 69
Query: 94 RLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
+ C + ++F+T R K + S+++ +A E I +P++ ++++ VL
Sbjct: 70 IVKCEFATSSFSTTERKPQQKTKGDRATTEISNLVKQAFESTIQTHLYPRSQINIYIQVL 129
Query: 148 ESGG 151
+S G
Sbjct: 130 QSDG 133
>gi|440904353|gb|ELR54878.1| Exosome complex exonuclease RRP41 [Bos grunniens mutus]
Length = 244
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLN 96
R D R + R R G A GSAY E GNTK + V+GP E S +A + +N
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASSRARALPDRALVN 72
Query: 97 CNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 CQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 131
>gi|41152247|ref|NP_957033.1| exosome complex exonuclease RRP41 [Danio rerio]
gi|37747963|gb|AAH59525.1| Exosc4 protein [Danio rerio]
gi|46403217|gb|AAS92628.1| exosome complex exonuclease RRP41 [Danio rerio]
gi|157423431|gb|AAI53618.1| Exosc4 protein [Danio rerio]
Length = 245
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR--L 95
R D R + R R A GSAY E GNTK + V+GP E + + S R +
Sbjct: 13 RLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDRAII 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + S L + E A++ E +P++ +D++ +L++ G
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQIDIYVKILQADG 132
>gi|198466492|ref|XP_001354017.2| GA20773 [Drosophila pseudoobscura pseudoobscura]
gi|198150625|gb|EAL29754.2| GA20773 [Drosophila pseudoobscura pseudoobscura]
Length = 328
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 51 FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFAT-PI 108
R G + + GSAY E+GNTKV+ V P E +A N+G +NC V++ FAT +
Sbjct: 48 LLRAGVLTTVRGSAYMEYGNTKVMAIVAPPHEMMRATARRMNMGVINCFVNFAAFATGEL 107
Query: 109 RGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
K SML KALE + F +D+ L+L+ G
Sbjct: 108 ESVPEREKHLGSMLSKALEPVVCRTEFLNFQLDIRVLILDDDG 150
>gi|311253303|ref|XP_003125499.1| PREDICTED: exosome complex component RRP41-like isoform 1 [Sus
scrofa]
Length = 245
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L +A E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQIDIYVQVLQADG 132
>gi|443703429|gb|ELU00980.1| hypothetical protein CAPTEDRAFT_140943 [Capitella teleta]
Length = 158
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGR 94
R D R ++ R R G + A GSAY E GNTKV+ +V+GP E + K+ +
Sbjct: 12 FRVDGRKPNELRRIQCRMGVFSQADGSAYIEQGNTKVLAAVYGPHEVRGSKSKAIHDQAL 71
Query: 95 LNCNVSYTTFATPIRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALV 146
+NC S F+T R + D K LH + E AI+ +P++ +D+F V
Sbjct: 72 INCQYSMAVFSTGERRRRPRGDKKSVEMTLHLKQTFEAAILTHLYPRSQIDIFIEV 127
>gi|126459546|ref|YP_001055824.1| exosome complex exonuclease Rrp41 [Pyrobaculum calidifontis JCM
11548]
gi|254782536|sp|A3MUP1.1|ECX1_PYRCJ RecName: Full=Probable exosome complex exonuclease 1
gi|126249267|gb|ABO08358.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
calidifontis JCM 11548]
Length = 246
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R Q R + G V++A GSA +G T + +V+GPRE + + + G +
Sbjct: 13 LRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72
Query: 96 NCNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
F+T + + S +L +ALE A++LE +P++ +DVF +L++ G
Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADG 132
>gi|195166781|ref|XP_002024213.1| GL22907 [Drosophila persimilis]
gi|194107568|gb|EDW29611.1| GL22907 [Drosophila persimilis]
Length = 328
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 51 FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFAT-PI 108
R G + + GSAY E+GNTKV+ V P E +A N+G +NC V++ FAT +
Sbjct: 48 LLRAGVLTTVRGSAYMEYGNTKVMAIVAPPHELMRATARRMNMGVINCFVNFAAFATGEL 107
Query: 109 RGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
K SML KALE + F +D+ L+L+ G
Sbjct: 108 ESVPEREKHLGSMLSKALEPVVCRTEFLNFQLDIRVLILDDDG 150
>gi|395512698|ref|XP_003760572.1| PREDICTED: exosome complex component RRP41 [Sarcophilus harrisii]
Length = 245
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + +P++ +D++ VL++ G
Sbjct: 73 NCQYSMATFSTGERKRRPHGDRKACEMGLQLRQTFEAAILTQLYPRSQIDIYVQVLQADG 132
>gi|126322962|ref|XP_001364428.1| PREDICTED: exosome complex component RRP41-like [Monodelphis
domestica]
Length = 245
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + +P++ +D++ VL++ G
Sbjct: 73 NCQYSMATFSTGERKRRPHGDRKACEMGLQLRQTFEAAILTQLYPRSQIDIYVQVLQADG 132
>gi|321465387|gb|EFX76389.1| hypothetical protein DAPPUDRAFT_213979 [Daphnia pulex]
Length = 246
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGR 94
LR D R ++ R G + A GSAY E GNTKV+ +V+GP E + K+ +
Sbjct: 12 LRIDGRKPNELRRIRCSLGIFSQADGSAYLEQGNTKVLAAVYGPHEIRGSKSKALHDKAF 71
Query: 95 LNCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+NC S TF+ R + D K + S+ L + AI E +P++ +D+F VL++
Sbjct: 72 VNCQYSTATFSMGERKRRPRGDRKSTEMSTHLEETFAAAIRTELYPRSQIDIFVEVLQAD 131
Query: 151 G 151
G
Sbjct: 132 G 132
>gi|426235362|ref|XP_004011653.1| PREDICTED: exosome complex component RRP41 isoform 1 [Ovis aries]
gi|426235364|ref|XP_004011654.1| PREDICTED: exosome complex component RRP41 isoform 2 [Ovis aries]
Length = 245
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>gi|57095694|ref|XP_539207.1| PREDICTED: exosome complex component RRP41 isoform 1 [Canis lupus
familiaris]
Length = 245
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>gi|325189047|emb|CCA23575.1| exosome complex exonuclease RRP41like protein putati [Albugo
laibachii Nc14]
Length = 261
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 13/128 (10%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--------SKKAMM 88
LR D R + R R G + A GSAY E GNTKV+V V+GPRE +K A
Sbjct: 18 LRLDGRREAETRRVRARLGVFHRADGSAYIEQGNTKVLVVVYGPREVDGTTLKNAKGAAS 77
Query: 89 YSNIGRLNCNVSYTTFATPIRG---QGSDHK--DFSSMLHKALEGAIILETFPKTTVDVF 143
++C + +FAT R SD K + SS + + E I +P++ + ++
Sbjct: 78 LVKKAIVHCECTQASFATSDRKVSRNASDRKNVEMSSAIKQIFESCIFTNLYPQSQISIY 137
Query: 144 ALVLESGG 151
VL++ G
Sbjct: 138 PQVLQADG 145
>gi|302406703|ref|XP_003001187.1| 3' exoribonuclease family protein [Verticillium albo-atrum
VaMs.102]
gi|261359694|gb|EEY22122.1| 3' exoribonuclease family protein [Verticillium albo-atrum
VaMs.102]
Length = 251
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 71/148 (47%), Gaps = 24/148 (16%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPA------FFRTGAVNSASGSAYAEF----- 68
P+ T P++ ++D R SR RPA F +TG +ASGSAYAE
Sbjct: 30 PSGATHAPVYQ-DELDASRNSSR----VRPANTMRNLFLKTGIAPAASGSAYAEIEAPAG 84
Query: 69 -----GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSS 120
K+I +V GPR ++ +S L+ +V Y FAT R + + +D S
Sbjct: 85 VSDTHAGMKLICTVHGPRALPRSAPFSPYLVLSTHVKYAPFATRQRRGYLRDASERDLSV 144
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLE 148
L AL G +I E +PK+ VDV +LE
Sbjct: 145 HLETALRGVVIGERWPKSGVDVTVTILE 172
>gi|40217446|emb|CAE46379.1| ribonuclease PH [uncultured archaeon]
gi|268323829|emb|CBH37417.1| Probable exosome complex exonuclease 2 [uncultured archaeon]
Length = 242
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R RGF + RP G + A GS Y E G+ K + +V+GPRE + + +
Sbjct: 11 DGKRLSGRGFEELRPIKIDVGVLKRADGSCYFELGDNKALAAVYGPREMHPRHFQNAKMA 70
Query: 94 RLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ + F+ R + G D + + S + KAL+ I+ E +PKT ++V+ VL+S
Sbjct: 71 VVKYRYNMAPFSVDDRKRPGPDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQS 129
>gi|339259380|ref|XP_003368936.1| proline synthetase [Trichinella spiralis]
gi|316963953|gb|EFV49297.1| proline synthetase [Trichinella spiralis]
Length = 249
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 23/140 (16%)
Query: 32 SDVDW----------LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR 81
+D+DW + D + C + R V S GSAY E TK++ +V GPR
Sbjct: 106 TDLDWEVGQLELSMGMSNDFQEAICCGSSSVRMNCVESFRGSAYIEMNKTKILCTVIGPR 165
Query: 82 ESKKA------MMYSNIGRLNCNVSYTTFATPIRGQG-------SDHKDFSSMLHKALEG 128
E+ K+ M+ +N G+L +V + FA R Q S+ ++ ++++ +A +
Sbjct: 166 EAHKSSEDSMGMLLANCGKLTVSVRFAPFAKTPRLQRRRKEVALSEEQNLATLIQQAFDS 225
Query: 129 AIILETFPKTTVDVFALVLE 148
+++E +PK + + +L+
Sbjct: 226 VVLVERYPKAEIVLIISILQ 245
>gi|352682028|ref|YP_004892552.1| exosome complex exonuclease 1 [Thermoproteus tenax Kra 1]
gi|350274827|emb|CCC81473.1| exosome complex exonuclease 1 (RNase PH) [Thermoproteus tenax Kra
1]
Length = 245
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNI 92
V+ R D R Q R G +++A GSA +GNT + +V+GPRE + + +
Sbjct: 10 VEGKRADGRAPDQMREVNIAVGVISNADGSAMVSYGNTVAVAAVYGPREMHPRHLSLPDK 69
Query: 93 GRLNCNVSYTTFATPIRGQG----SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ F+T + + S +L +ALE AI LE FP++ +DVF +L+
Sbjct: 70 AVMRVRYHMAPFSTKDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSRIDVFIEILQ 129
Query: 149 SGG 151
+ G
Sbjct: 130 ADG 132
>gi|189239465|ref|XP_975230.2| PREDICTED: similar to exosome complex exonuclease RRP41, putative
[Tribolium castaneum]
Length = 249
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R + R + G GSAY E G TKV+ +V+GP + A + +N
Sbjct: 13 LRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVGFAKAQHDSAVVN 72
Query: 97 CNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S F+T R + D K + S L +AL AI +E +P T +DV+ VL + G
Sbjct: 73 CQFSMAVFSTGERKKRPRGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEVLHADG 131
>gi|442749707|gb|JAA67013.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Ixodes ricinus]
Length = 246
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G + A GSAY E GN KV+ +V+GP E + ++ + +
Sbjct: 13 RLDGRKPTEQRKIDCRLGVFSQADGSAYIEQGNAKVLAAVYGPHEPRGNRSRALHDRVLV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E I+ + +P++ +D+F VL+S G
Sbjct: 73 NCQFSMATFSTFERKRRPRGDKKSQEMTLHIQQTFEATILTQLYPRSQIDIFVEVLQSDG 132
>gi|145346010|ref|XP_001417490.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577717|gb|ABO95783.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 240
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D+R CR V +A+GSAY E G+TK +V+GPR + + + G L+
Sbjct: 8 REDARADAHCRALVVALDVVPAAAGSAYVELGDTKASCAVYGPRRGRAELAGVDRGTLDV 67
Query: 98 NVSYTTFATPIRG-------------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+ FAT R + + + +AL +++ E+FPKT VD
Sbjct: 68 DAYRAPFATGARALDGANRARARGRGARTADDGLARTVKEALSASVLTESFPKTQVDACV 127
Query: 145 LVLESGG 151
VL++ G
Sbjct: 128 TVLDARG 134
>gi|330508837|ref|YP_004385265.1| exosome complex exonuclease 1 [Methanosaeta concilii GP6]
gi|328929645|gb|AEB69447.1| exosome complex exonuclease 1 [Methanosaeta concilii GP6]
Length = 253
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS---N 91
D LR D R + RP G + A GS Y E G KVI +V+GPRE +
Sbjct: 14 DGLRLDGRRADELRPVKIEVGILARADGSCYIEMGGNKVIAAVYGPREVHPRHLQEVTRA 73
Query: 92 IGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
I R N++ +F+ R + G D + + S + +ALE I+ FP++ +DVF VL+
Sbjct: 74 IVRYRYNMA--SFSVEERKRPGPDRRSYELSKVSREALEPVILTSFFPRSVIDVFVEVLQ 131
Query: 149 S 149
+
Sbjct: 132 A 132
>gi|26452638|dbj|BAC43402.1| unknown protein [Arabidopsis thaliana]
Length = 140
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/31 (90%), Positives = 30/31 (96%)
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGG 151
MLHKALEG I++ETFPKTTVDVFALVLESGG
Sbjct: 1 MLHKALEGVIMMETFPKTTVDVFALVLESGG 31
>gi|402079729|gb|EJT74994.1| hypothetical protein GGTG_08832 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 291
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 19/146 (13%)
Query: 20 PTRKTRPPIF------SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGN--- 70
P T PP+F +G V +R +R + R F +TG ASGSAY E +
Sbjct: 10 PVGTTYPPVFINEPADNGKKVQRIR--TRPPNTIRKMFLKTGITPPASGSAYLEIEHPSG 67
Query: 71 -----TKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSML 122
K+ +V GPR ++ +S L+ +V Y FAT R + + +D S L
Sbjct: 68 SGMSGLKLACTVHGPRALPRSAPFSPHIVLSTHVKYAPFATKQRRGYIRDASERDLSVHL 127
Query: 123 HKALEGAIILETFPKTTVDVFALVLE 148
AL GAII + +PK+ VDV V+E
Sbjct: 128 ETALRGAIIADRWPKSGVDVIVSVIE 153
>gi|453081530|gb|EMF09579.1| hypothetical protein SEPMUDRAFT_166241 [Mycosphaerella populorum
SO2202]
Length = 319
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 67/150 (44%), Gaps = 21/150 (14%)
Query: 20 PTRKTRPPIFS-GSDVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF--------- 68
P T PP+FS D +P SR + R F RTG V SASGSAY E
Sbjct: 11 PAGGTAPPVFSLPRDTQITKPTRSRKPDEHRKIFLRTGVVPSASGSAYYEISPHVSEASK 70
Query: 69 -------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDF 118
N K+ +V GPR + +S L+ +V + FAT +R + + +D
Sbjct: 71 QFSTPLSSNLKISCTVHGPRPLPRNAAFSPNLLLSTHVKFAPFATRVRRGYVRDASERDL 130
Query: 119 SSMLHKALEGAIILETFPKTTVDVFALVLE 148
L AL G II E +PK +V VLE
Sbjct: 131 GVHLETALRGVIIGERWPKAGCEVVITVLE 160
>gi|122920908|pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 249
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 17 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 76
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 77 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 136
>gi|254570999|ref|XP_002492609.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
exosome [Komagataella pastoris GS115]
gi|238032407|emb|CAY70430.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
exosome [Komagataella pastoris GS115]
gi|328353384|emb|CCA39782.1| exosome complex component RRP41 [Komagataella pastoris CBS 7435]
Length = 246
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
LR D R +++ R + R +N+ A GSAY E GNTK++ + GP E ++ M +
Sbjct: 9 LRVDGRRWNELRRFYCR---INTHPIVADGSAYVEAGNTKIVCLLNGPHEPTRSQMNTQK 65
Query: 93 GRLNCNVSYTTFATPIRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L+ + + F+T R + + + ++ S++L E +IL+ +P+T ++V VL
Sbjct: 66 GSLDIKLHVSPFSTTERRKVTRNDRRIQELSTILKNTFEQVVILKNYPRTIIEVNVRVLA 125
Query: 149 SGG 151
G
Sbjct: 126 QDG 128
>gi|410671927|ref|YP_006924298.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanolobus
psychrophilus R15]
gi|409171055|gb|AFV24930.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanolobus
psychrophilus R15]
Length = 346
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMY--- 89
D + LR D R ++ R + G ++ A GS Y E+GN K++V+V+GPRE +
Sbjct: 10 DENGLRLDGRQINEMRQMKIKIGVLSRADGSCYLEWGNNKILVAVYGPRELHPRRLQKAD 69
Query: 90 SNIGRLNCNVSYTTFATPIR-GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
S + R N++ + IR G + S + +A E I+ +P +DVFA VL+
Sbjct: 70 SALIRYRYNMAAFSVEDRIRPGPSRRSIEISKVSREAFEPVIMTHLYPGAVIDVFAEVLQ 129
Query: 149 S 149
+
Sbjct: 130 A 130
>gi|344307537|ref|XP_003422437.1| PREDICTED: exosome complex component RRP41-like [Loxodonta
africana]
Length = 245
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>gi|75045923|sp|Q7YRA3.3|EXOS4_BOVIN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|33411774|emb|CAD58792.1| putative exosome complex exonuclease RRP41 [Bos taurus]
gi|296480766|tpg|DAA22881.1| TPA: exosome complex exonuclease RRP41 [Bos taurus]
Length = 245
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>gi|417397757|gb|JAA45912.1| Putative exosome complex component rrp41 [Desmodus rotundus]
Length = 245
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>gi|298674553|ref|YP_003726303.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
gi|298287541|gb|ADI73507.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
Length = 333
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + LR D R + RP G ++ A GS Y E+GN K+I +V+GPRE + M +
Sbjct: 10 DENGLRVDGRRTDEIRPMKVDIGVLSRADGSCYLEWGNNKIISAVYGPRELHPRRMQRPD 69
Query: 92 IGRLNCNVSYTTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ + +F+ R G + S + +A E ++ + +P T +DVF+ VLE
Sbjct: 70 AAVIRYKYNMASFSVEDRQRPGPSRRSSEISKVSSEAFEPVVMTQFYPNTVIDVFSEVLE 129
Query: 149 S 149
+
Sbjct: 130 A 130
>gi|410987869|ref|XP_004000217.1| PREDICTED: exosome complex component RRP41 [Felis catus]
Length = 245
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>gi|9506689|ref|NP_061910.1| exosome complex component RRP41 [Homo sapiens]
gi|386780762|ref|NP_001248033.1| exosome component 4 [Macaca mulatta]
gi|114622153|ref|XP_001154573.1| PREDICTED: exosome complex component RRP41 isoform 1 [Pan
troglodytes]
gi|332264376|ref|XP_003281213.1| PREDICTED: exosome complex component RRP41 isoform 1 [Nomascus
leucogenys]
gi|397497366|ref|XP_003819483.1| PREDICTED: exosome complex component RRP41 [Pan paniscus]
gi|402912472|ref|XP_003918788.1| PREDICTED: exosome complex component RRP41 [Papio anubis]
gi|410042315|ref|XP_003951415.1| PREDICTED: exosome complex component RRP41 isoform 2 [Pan
troglodytes]
gi|410042317|ref|XP_003951416.1| PREDICTED: exosome complex component RRP41 isoform 3 [Pan
troglodytes]
gi|426360983|ref|XP_004047707.1| PREDICTED: exosome complex component RRP41-like [Gorilla gorilla
gorilla]
gi|426360993|ref|XP_004047712.1| PREDICTED: exosome complex component RRP41 [Gorilla gorilla
gorilla]
gi|441648333|ref|XP_004090877.1| PREDICTED: exosome complex component RRP41 isoform 2 [Nomascus
leucogenys]
gi|14285756|sp|Q9NPD3.3|EXOS4_HUMAN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41; AltName: Full=p12A
gi|8927590|gb|AAF82134.1|AF281133_1 exosome component Rrp41 [Homo sapiens]
gi|7020801|dbj|BAA91279.1| unnamed protein product [Homo sapiens]
gi|12803867|gb|AAH02777.1| Exosome component 4 [Homo sapiens]
gi|119602572|gb|EAW82166.1| exosome component 4 [Homo sapiens]
gi|261860724|dbj|BAI46884.1| exosome component 4 [synthetic construct]
gi|325464127|gb|ADZ15834.1| exosome component 4 [synthetic construct]
gi|380785703|gb|AFE64727.1| exosome complex component RRP41 [Macaca mulatta]
gi|383414799|gb|AFH30613.1| exosome complex component RRP41 [Macaca mulatta]
gi|384943268|gb|AFI35239.1| exosome complex component RRP41 [Macaca mulatta]
gi|410250230|gb|JAA13082.1| exosome component 4 [Pan troglodytes]
gi|410290294|gb|JAA23747.1| exosome component 4 [Pan troglodytes]
gi|410331253|gb|JAA34573.1| exosome component 4 [Pan troglodytes]
Length = 245
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>gi|18313178|ref|NP_559845.1| exosome complex exonuclease Rrp41 [Pyrobaculum aerophilum str. IM2]
gi|29336868|sp|Q8ZVM9.1|ECX1_PYRAE RecName: Full=Probable exosome complex exonuclease 1
gi|18160692|gb|AAL64027.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
Length = 246
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
+R D R Q R G V++A GSA +G T + +V+GPRE + + + G +
Sbjct: 13 VRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72
Query: 96 NCNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
F+T + + S +L +ALE AI+LE +P++ +DVF +L++ G
Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQADG 132
>gi|297683870|ref|XP_002819616.1| PREDICTED: exosome complex component RRP41 [Pongo abelii]
Length = 343
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GS Y E GNTK + V+GP E + +A + +
Sbjct: 111 RVDGRRAGELRKIQARMGVFAQADGSGYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 170
Query: 96 NCNVSYTTFATPIRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 171 NCQYSSATFSTGERKR-RRHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 229
Query: 151 G 151
G
Sbjct: 230 G 230
>gi|194215186|ref|XP_001917049.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP41-like [Equus caballus]
Length = 245
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>gi|395860170|ref|XP_003802388.1| PREDICTED: exosome complex component RRP41 [Otolemur garnettii]
Length = 245
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>gi|294495471|ref|YP_003541964.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
mahii DSM 5219]
gi|292666470|gb|ADE36319.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
mahii DSM 5219]
Length = 297
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + LR D R + RP G ++ A GS Y E+GN KV+ +V+GPRE + M N
Sbjct: 10 DDEGLRLDGRRVDEIRPMKVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRMQKPN 69
Query: 92 --IGRLNCNVSYTTFATPIR-GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ R N++ + IR G + S + +A E ++ + +P +DVFA VL+
Sbjct: 70 EVLVRYKYNMASFSVEDRIRPGPSRRSTEISKVSGEAFEPVVMTQYYPGAVIDVFAEVLQ 129
Query: 149 S 149
+
Sbjct: 130 A 130
>gi|301773434|ref|XP_002922118.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2
[Ailuropoda melanoleuca]
Length = 240
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + R R G A GSAY E GNTK + V+GP E+K + +NC
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEAKG---RRDRALVNC 69
Query: 98 NVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 70 QYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 127
>gi|296227067|ref|XP_002759197.1| PREDICTED: exosome complex component RRP41 [Callithrix jacchus]
Length = 245
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>gi|339237159|ref|XP_003380134.1| exosome complex exonuclease MTR3 [Trichinella spiralis]
gi|316977092|gb|EFV60250.1| exosome complex exonuclease MTR3 [Trichinella spiralis]
Length = 232
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 13/110 (11%)
Query: 55 GAVNSASGSAYAEFGNTKVIVSVFGPRESKKA------MMYSNIGRLNCNVSYTTFATPI 108
V S GSAY E TK++ +V GPRE+ K+ M+ +N G+L +V + FA
Sbjct: 29 NCVESFRGSAYIEMNKTKILCTVIGPREAHKSSEDSMGMLLANCGKLTVSVRFAPFAKTP 88
Query: 109 RGQG-------SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
R Q S+ ++ ++++ +A + +++E +PK + + +L+ G
Sbjct: 89 RLQRRRKEVALSEEQNLATLIQQAFDSVVLVERYPKAEIVLIISILQDSG 138
>gi|242088177|ref|XP_002439921.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
gi|241945206|gb|EES18351.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
Length = 242
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGRL 95
R D R ++ R G V A GSA E GNT+VI +V+GPRE +K + SN +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEALV 70
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C F+T R + D + + S ++ + +E +I+ P++ +D++ VL++ G
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIYVQVLQADG 130
>gi|386002838|ref|YP_005921137.1| Exosome complex exonuclease 1 [Methanosaeta harundinacea 6Ac]
gi|357210894|gb|AET65514.1| Exosome complex exonuclease 1 [Methanosaeta harundinacea 6Ac]
Length = 251
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS---N 91
D LR D R + RP G + A GS Y E G+ KVI +V+GPRE +
Sbjct: 10 DGLRLDGRRPDELRPIKIEVGVLERADGSCYIEMGDNKVIAAVYGPREVHPRHLQEVTRA 69
Query: 92 IGRLNCNVSYTTFATPIRGQ-GSDHKDF--SSMLHKALEGAIILETFPKTTVDVFALVLE 148
I R N++ +F+ R + G D + + S + +AL I+ FP++ VD+F VL+
Sbjct: 70 IVRYRYNMA--SFSVEERKRPGPDRRSYEVSKVSREALASVILTSYFPRSVVDIFVEVLQ 127
Query: 149 S 149
+
Sbjct: 128 A 128
>gi|171690730|ref|XP_001910290.1| hypothetical protein [Podospora anserina S mat+]
gi|170945313|emb|CAP71425.1| unnamed protein product [Podospora anserina S mat+]
Length = 287
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 13 ATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF-GNT 71
AT +P+ +P I +G D R + R F +TG SASGSAY EF G++
Sbjct: 13 ATMAPVFEDDAGQPEIKNGKGRD------RAPNIIRKTFLKTGVTPSASGSAYLEFEGSS 66
Query: 72 KVIVS-------VFGPRESKKAMMYSNIGRLNCNVSYTTFATPIR-GQGSD--HKDFSSM 121
K VS V GPR ++ +S L+ +V Y FAT R G D +D +
Sbjct: 67 KSGVSGLKLSCTVHGPRSLPRSSPFSPHIVLSAHVKYAPFATKQRRGYLRDPSERDLGTH 126
Query: 122 LHKALEGAIILETFPKTTVDVFALVLE 148
L AL GAII + +PK+ VD+ ++E
Sbjct: 127 LETALRGAIIADRWPKSGVDIIISIIE 153
>gi|301773432|ref|XP_002922117.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1
[Ailuropoda melanoleuca]
Length = 245
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>gi|195996065|ref|XP_002107901.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
gi|190588677|gb|EDV28699.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
Length = 243
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
+ LR D R + R R G ++ A GSAY E GNTK + S+ GP ++ KA + +
Sbjct: 7 EGLRIDGRRPEEIRRFNCRLGVLSRADGSAYLEQGNTKALASINGPHQAGDKAKIKHDRV 66
Query: 94 RLNCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+N S TF+T R D + D S ++ + + AI+ + +PK+ +D+ +L++
Sbjct: 67 HINFQYSMATFSTNERRNRPKGDKRSIDISQLMREIFQSAILTDLYPKSQIDIHVQILQA 126
Query: 150 GG 151
G
Sbjct: 127 DG 128
>gi|322692770|gb|EFY84660.1| 3' exoribonuclease [Metarhizium acridum CQMa 102]
Length = 283
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 13/140 (9%)
Query: 20 PTRKTRPPIFSGSDVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT------- 71
P T PP++ + ++P +R + RP + +TG SASGSAY E +
Sbjct: 10 PGGPTNPPVYDEDSI--IKPVRTRNNNDVRPFYLKTGVTPSASGSAYLEIDQSTGSGFGM 67
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEG 128
K +V GPR ++ +S ++ +V Y FAT R + + +D S L AL G
Sbjct: 68 KFTCTVHGPRSLPRSAPFSPHMVISTHVKYAPFATRQRRGYLRDASERDLSIHLETALRG 127
Query: 129 AIILETFPKTTVDVFALVLE 148
A+I + +PK+ V+V ++E
Sbjct: 128 AVIADRWPKSGVEVVVTIVE 147
>gi|119872348|ref|YP_930355.1| exosome complex exonuclease Rrp41 [Pyrobaculum islandicum DSM 4184]
gi|254782537|sp|A1RST0.1|ECX1_PYRIL RecName: Full=Probable exosome complex exonuclease 1
gi|119673756|gb|ABL88012.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum islandicum
DSM 4184]
Length = 246
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-K 85
P+F + +R D R Q R G V++A GSA +G T + +V+GPRE +
Sbjct: 7 PLFQ----NGVRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPR 62
Query: 86 AMMYSNIGRLNCNVSYTTFA--------TPIRGQGSDHKDFSSMLHKALEGAIILETFPK 137
+ + G + F+ TP R + + S +L +ALE A++LE +P+
Sbjct: 63 HLSLPDRGVMRVRYHMAPFSTKDERKSPTPTRRE----IEISKILREALEPAVVLEQYPR 118
Query: 138 TTVDVFALVLESGG 151
+ +DVF +L++ G
Sbjct: 119 SRIDVFIEILQADG 132
>gi|291416252|ref|XP_002724360.1| PREDICTED: exosome component 4 [Oryctolagus cuniculus]
Length = 245
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTAERKRRPHGDRKSCELGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>gi|327310389|ref|YP_004337286.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
gi|326946868|gb|AEA11974.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
Length = 245
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG 93
V+ R D R Q R G +++A GSA +GNT + +V+GPRE + S
Sbjct: 10 VEGRRADGRTPDQMREVKISVGVISNADGSAMVSYGNTTAVAAVYGPREMHPRHL-SLPD 68
Query: 94 RLNCNVSYTTFATPIRGQGSD------HKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
R V Y R + + + S +L +ALE AI LE FP++ +DVF ++
Sbjct: 69 RAVMRVRYHMAPFSTRDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSRIDVFVEIV 128
Query: 148 ESGG 151
++ G
Sbjct: 129 QADG 132
>gi|348555838|ref|XP_003463730.1| PREDICTED: exosome complex component RRP41-like [Cavia porcellus]
Length = 245
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKRRA-HGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 G 151
G
Sbjct: 132 G 132
>gi|384499406|gb|EIE89897.1| hypothetical protein RO3G_14608 [Rhizopus delemar RA 99-880]
Length = 135
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMM-YSNIG 93
+ LR D R ++ R +T + A GSAY E GNTK + +V+GPRE + M S+
Sbjct: 10 EGLRVDGRRANELRKITAKTSVFSQADGSAYIEQGNTKCLAAVYGPREVRHRMQALSDRA 69
Query: 94 RLNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+N + F+T R + S + + ++ + + E ++ FP++ +D++ V ++
Sbjct: 70 IINVEFNIAPFSTSERKKRSKNDKRSLEVAAFIRQTFEPVVLTTQFPRSQIDIYLQVFQN 129
Query: 150 GG 151
G
Sbjct: 130 DG 131
>gi|452838914|gb|EME40854.1| hypothetical protein DOTSEDRAFT_178087 [Dothistroma septosporum
NZE10]
Length = 317
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 66/150 (44%), Gaps = 21/150 (14%)
Query: 20 PTRKTRPPIFS-GSDVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF--------- 68
P T PP+F+ DV RP SR + R F RTG V SASGSAY E
Sbjct: 13 PPGGTAPPVFATAQDVKVERPSRSRNADEHRKIFLRTGVVPSASGSAYYEIPPQGSDAPS 72
Query: 69 -------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDF 118
K+ +V GPR + +S L ++ + FAT R + + +D
Sbjct: 73 KLLVPSASTLKISCTVHGPRPLPRNAAFSPNLLLTTHIKFAPFATRQRRGYVRDASERDL 132
Query: 119 SSMLHKALEGAIILETFPKTTVDVFALVLE 148
L AL G II E +PK+ +V VLE
Sbjct: 133 GVHLETALRGVIIGERWPKSGCEVIITVLE 162
>gi|298709840|emb|CBJ26180.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 244
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 17/126 (13%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
LRPD R + R R G A GSAY E G TK+I V GPRE +++ + G +
Sbjct: 13 LRPDGRRGREIRRVRSRFGVFKGADGSAYLEMGQTKIIAIVKGPREVTRRQDRKYDTGIV 72
Query: 96 NCNVSYTTFATPIRGQGSDHK----------DFSSMLHKALEGAIILETFPKTTVDVFAL 145
NC + F+ GS+ K + + + + EGAI+L +P+T +D++
Sbjct: 73 NCEYNVAPFS------GSERKKRRPTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLH 126
Query: 146 VLESGG 151
V++S G
Sbjct: 127 VIQSDG 132
>gi|355698284|gb|EHH28832.1| hypothetical protein EGK_19355 [Macaca mulatta]
Length = 247
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES----KKAMMYSNIG 93
R D R + R R G A GSAY E GNTK + V+GP E+ +A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASIRGSRARALPDRA 72
Query: 94 RLNCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++
Sbjct: 73 LVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQA 132
Query: 150 GG 151
G
Sbjct: 133 DG 134
>gi|367045422|ref|XP_003653091.1| hypothetical protein THITE_2115125 [Thielavia terrestris NRRL 8126]
gi|347000353|gb|AEO66755.1| hypothetical protein THITE_2115125 [Thielavia terrestris NRRL 8126]
Length = 286
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 14/143 (9%)
Query: 20 PTRKTRPPIFSGS---DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT----- 71
P T PP+F + ++ ++ SR + R F +TG SASGSAY E +
Sbjct: 10 PAGATIPPVFDDAGFQELKTVKTRSRPPNVLRKMFLKTGVTPSASGSAYLEITTSGKPGV 69
Query: 72 ---KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIR-GQGSD--HKDFSSMLHKA 125
K+ SV GPR ++ +S L+ +V Y FAT R G D +D L A
Sbjct: 70 SGLKLSCSVHGPRSLPRSSPFSPHMVLSTHVKYAPFATKQRRGYLRDPSERDLGIHLETA 129
Query: 126 LEGAIILETFPKTTVDVFALVLE 148
L GAII + +PK+ VD+ ++E
Sbjct: 130 LRGAIIADRWPKSGVDIIISIIE 152
>gi|355780009|gb|EHH64485.1| hypothetical protein EGM_17708 [Macaca fascicularis]
Length = 247
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES----KKAMMYSNIG 93
R D R + R R G A GSAY E GNTK + V+GP E+ +A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEAXIRGSRARALPDRA 72
Query: 94 RLNCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++
Sbjct: 73 LVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQA 132
Query: 150 GG 151
G
Sbjct: 133 DG 134
>gi|66475762|ref|XP_627697.1| archeo-eukaryotice exosomal RNAse PH [Cryptosporidium parvum Iowa
II]
gi|32398930|emb|CAD98395.1| ribonuclease PH-like protein, possible [Cryptosporidium parvum]
gi|46229123|gb|EAK89972.1| archeo-eukaryotice exosomal RNAse PH [Cryptosporidium parvum Iowa
II]
gi|323509005|dbj|BAJ77395.1| cgd6_3540 [Cryptosporidium parvum]
Length = 303
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
+R D R F + RP RTG + +A GSAY GNTKV+ ++GP K+ + L
Sbjct: 45 LIRNDDRQFEELRPITIRTGVIENADGSAYFSIGNTKVLCGIYGPNLCKQNPIEDG---L 101
Query: 96 NCNVSYTT-------------FATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDV 142
+ +V YT T SD K S +L K + I E + ++++D
Sbjct: 102 SVSVEYTIGSFCRDSALAKSKVNTENIEIKSDEKIKSILLEKVISSVICHEKYKRSSIDC 161
Query: 143 FALVLESGG 151
+ +++ G
Sbjct: 162 YFYIIDDDG 170
>gi|322709903|gb|EFZ01478.1| 3' exoribonuclease [Metarhizium anisopliae ARSEF 23]
Length = 283
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 13/140 (9%)
Query: 20 PTRKTRPPIFSGSDVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT------- 71
P T PP++ + ++P +R + RP + +TG SASGSAY E +
Sbjct: 10 PGGPTNPPVYDEDLI--IKPVRTRNNNDVRPFYLKTGVTPSASGSAYLEIDQSTGSGFGM 67
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEG 128
K +V GPR ++ +S ++ +V Y FAT R + + +D S L AL G
Sbjct: 68 KFTCTVHGPRSLPRSAPFSPHMVISTHVKYAPFATRQRKGYLRDASERDLSIHLETALRG 127
Query: 129 AIILETFPKTTVDVFALVLE 148
A+I + +PK+ V+V ++E
Sbjct: 128 AVIADRWPKSGVEVVVTIVE 147
>gi|198427597|ref|XP_002131069.1| PREDICTED: similar to LOC495942 protein [Ciona intestinalis]
Length = 247
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAM---MYSNIGR 94
R D R + R G A GSAY E GNTKV+ +++GP E+ M + +
Sbjct: 13 RFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVLAAIYGPHEASNNMRSRVCLDKCF 72
Query: 95 LNCNVSYTTFATPIRGQGS----DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+NC S F++ R + S KD S+ + + E A+ + +P++ +D++ VL S
Sbjct: 73 INCEFSQAMFSSAERKKRSRGDRKGKDMSAHIKQTFEAAVRTQLYPRSQIDIYLQVLHSD 132
Query: 151 G 151
G
Sbjct: 133 G 133
>gi|288930697|ref|YP_003434757.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
gi|288892945|gb|ADC64482.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
Length = 245
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 8/122 (6%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMY---S 90
VD R D R + RP G + +A GS Y E G KV+ +V+GPR+ + +
Sbjct: 9 VDGRRIDGRLPDELRPIKIEAGVLKNADGSCYLEMGKNKVMAAVYGPRKVQPKHLADPTQ 68
Query: 91 NIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
I R N++ F+ R + G D + + S + +ALE I+ E FP++++D+F VL
Sbjct: 69 AIVRYRYNMA--PFSVEERKRPGPDRRSVEISKVSREALESIIMKELFPRSSIDIFVEVL 126
Query: 148 ES 149
++
Sbjct: 127 QA 128
>gi|302829841|ref|XP_002946487.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
gi|300268233|gb|EFJ52414.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
Length = 245
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R + ++SA GSA E GNTKV+ +VFGP +K+A + +
Sbjct: 7 EGLRLDGRRPRELRRINCQLDVLSSADGSAIFEMGNTKVLAAVFGPHAVTKRADLREDAA 66
Query: 94 RLNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T R + + S ++ LE AI+ E P++ +DV+ VL++
Sbjct: 67 IVVCEYSMAAFSTGERRRRGKGDRRSTELSMVIRNTLEQAILRELMPRSQIDVYVQVLQA 126
Query: 150 GG 151
G
Sbjct: 127 DG 128
>gi|302801728|ref|XP_002982620.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
gi|300149719|gb|EFJ16373.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
Length = 242
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
LR D R + R G V +A+GSA E GNTKVI +V+GP E ++ + +
Sbjct: 9 LRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRALV 68
Query: 96 NCNVSYTTFAT----PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S F+T + S ++ + LE AI+ PK+ +D++ VL++ G
Sbjct: 69 RCEYSMAAFSTGDRRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVLQADG 128
>gi|171185834|ref|YP_001794753.1| exosome complex exonuclease Rrp41 [Pyrobaculum neutrophilum V24Sta]
gi|254782538|sp|B1Y978.1|ECX1_THENV RecName: Full=Probable exosome complex exonuclease 1
gi|170935046|gb|ACB40307.1| exosome complex exonuclease 1 [Pyrobaculum neutrophilum V24Sta]
Length = 246
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-K 85
P+ G +R D R Q R G +++A GSA +G T + +V+GPRE +
Sbjct: 7 PLLQGG----VRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPR 62
Query: 86 AMMYSNIGRLNCNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVD 141
+ + G + F+T + + S +L +ALE A++LE +P++ +D
Sbjct: 63 HLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRID 122
Query: 142 VFALVLESGG 151
VF +L++ G
Sbjct: 123 VFIEILQADG 132
>gi|440466166|gb|ELQ35448.1| 3' exoribonuclease family protein [Magnaporthe oryzae Y34]
gi|440480663|gb|ELQ61316.1| 3' exoribonuclease family protein [Magnaporthe oryzae P131]
Length = 302
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 20 PTRKTRPPIFSGS---DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGN------ 70
P T PP+F D R SR + R F +TG SASGSAY E N
Sbjct: 10 PVGTTLPPVFFDEPIPDKPGPRTRSRPPNAIRKIFLKTGITPSASGSAYLEIENPVVPGK 69
Query: 71 --------TKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFS 119
K+ +V GPR ++ +S L+ ++ Y FAT R + S +D S
Sbjct: 70 EGETSTSGLKLSCTVHGPRALPRSTPFSPHIILSTHIKYAPFATKQRRGYIRDSTERDLS 129
Query: 120 SMLHKALEGAIILETFPKTTVDVFALVLE 148
L AL G II + +PK+ VDV V+E
Sbjct: 130 VHLETALRGVIIADRWPKSGVDVIVSVIE 158
>gi|305663898|ref|YP_003860186.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
gi|304378467|gb|ADM28306.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
Length = 242
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 13/127 (10%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNI 92
+D R D R RP G + +A GSA E G T V+ +V+GPRE + +
Sbjct: 10 IDGRRHDGRRPEDLRPIRMEVGVLKNADGSAIVEIGKTVVLAAVYGPREVVPRHEEIVDR 69
Query: 93 GRLNCNVSYTTFAT--------PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+ C +F+T P R + + S ++ +ALE AII +P+T +D+F
Sbjct: 70 AVIRCRYRMLSFSTLGERKSPAPSRRE----IELSKVIREALEPAIISSMYPRTAIDIFV 125
Query: 145 LVLESGG 151
V+ + G
Sbjct: 126 EVINANG 132
>gi|448099279|ref|XP_004199107.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
gi|359380529|emb|CCE82770.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
Length = 244
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R SA GS+Y E GNTKVI V GP+E S K+ S+
Sbjct: 12 LRVDGRRWNELRRFDCRINTHPQSADGSSYVEQGNTKVICMVSGPKEPSNKSQQNSSGAV 71
Query: 95 LNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ NVS +F+T R + S ++ + ++ L + E +II + +P+TT+ V VL
Sbjct: 72 IEFNVSIASFSTTNRKKRSKNEKRTIELNTTLERTFEQSIIRKLYPRTTISVNLHVLAQD 131
Query: 151 G 151
G
Sbjct: 132 G 132
>gi|226291910|gb|EEH47338.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
Pb18]
Length = 350
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 30/159 (18%)
Query: 20 PTRKTRPPIFSGS--------DVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEFGN 70
P+ TRPP+F+ S + RP SR + R F +TG + SASGSAY EF
Sbjct: 10 PSGDTRPPVFASSLLASNNRRSIALERPIRSRKPDELRKIFLKTGLIPSASGSAYLEFQT 69
Query: 71 T------------------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG-- 110
+ K+ +V GP+ ++ +S L+ +V + FAT R
Sbjct: 70 STNLPRSKLKTLIRPSSSLKITCAVHGPKPLPRSAPFSPNLLLSTHVKFAPFATRRRRGY 129
Query: 111 -QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ + +D L AL+G II E +PK+ +D+ +LE
Sbjct: 130 IRDVNERDLGVHLETALKGVIIGERWPKSGLDITVTILE 168
>gi|302798759|ref|XP_002981139.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
gi|300151193|gb|EFJ17840.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
Length = 264
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
LR D R + R G V +A+GSA E GNTKVI +V+GP E ++ + +
Sbjct: 9 LRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRALV 68
Query: 96 NCNVSYTTFAT----PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S F+T + S ++ + LE AI+ PK+ +D++ VL++ G
Sbjct: 69 RCEYSMAAFSTGDRRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVLQADG 128
>gi|357017365|gb|AET50711.1| hypothetical protein [Eimeria tenella]
Length = 299
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG 93
V+ R D R + RP +T ++ SASGSA+ GNTKV ++FGPR + ++ + + G
Sbjct: 40 VNGRRRDGRLPEEVRPMHLQTLSLGSASGSAFVSVGNTKVYCAIFGPRSAGRSDL-QDRG 98
Query: 94 RLNCNVSYTTFATPIRGQGSD-HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + + F G + + +LH+AL+ ++LE +PK+ ++V + LE G
Sbjct: 99 FIKVDYRGSPFFQRSSADGGETQEQLLLLLHQALDSCVLLERYPKSVLEVSFMFLEEDG 157
>gi|389635235|ref|XP_003715270.1| 3' exoribonuclease [Magnaporthe oryzae 70-15]
gi|351647603|gb|EHA55463.1| 3' exoribonuclease [Magnaporthe oryzae 70-15]
Length = 302
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 20 PTRKTRPPIFSGS---DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGN------ 70
P T PP+F D R SR + R F +TG SASGSAY E N
Sbjct: 10 PVGTTLPPVFFDEPIPDKPGPRTRSRPPNAIRKIFLKTGITPSASGSAYLEIENPVVSGK 69
Query: 71 --------TKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFS 119
K+ +V GPR ++ +S L+ ++ Y FAT R + S +D S
Sbjct: 70 EGETSTSGLKLSCTVHGPRALPRSTPFSPHIILSTHIKYAPFATKQRRGYIRDSTERDLS 129
Query: 120 SMLHKALEGAIILETFPKTTVDVFALVLE 148
L AL G II + +PK+ VDV V+E
Sbjct: 130 VHLETALRGVIIADRWPKSGVDVIVSVIE 158
>gi|118151420|ref|NP_001071554.1| exosome complex component RRP41 [Bos taurus]
gi|81673708|gb|AAI09820.1| Exosome component 4 [Bos taurus]
Length = 245
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRPLV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>gi|198442889|ref|NP_001128332.1| exosome complex exonuclease RRP41 [Rattus norvegicus]
Length = 245
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>gi|354491158|ref|XP_003507723.1| PREDICTED: exosome complex component RRP41-like [Cricetulus
griseus]
Length = 245
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>gi|270010551|gb|EFA06999.1| hypothetical protein TcasGA2_TC009968 [Tribolium castaneum]
Length = 251
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK----KAMMYSNI 92
LR D R + R + G GSAY E G TKV+ +V+GP + + KA S +
Sbjct: 13 LRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVRGSRSKAQHDSAV 72
Query: 93 GRLNCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+NC S F+T R + D K + S L +AL AI +E +P T +DV+ VL
Sbjct: 73 --VNCQFSMAVFSTGERKKRPRGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEVLH 130
Query: 149 SGG 151
+ G
Sbjct: 131 ADG 133
>gi|328769717|gb|EGF79760.1| hypothetical protein BATDEDRAFT_19845 [Batrachochytrium
dendrobatidis JAM81]
Length = 253
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R + R + G +A GSAY E GNTK + +V+GP+ESK ++ + +
Sbjct: 24 LRVDGRRPPELRRLLTKVGLFTNADGSAYIELGNTKCVAAVYGPKESKIQSAQLHDRAVI 83
Query: 96 NCNVSYTTFATPIR----GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
N + +F++ R + + +S++ + E ++ TFP++ +D++ +L+ G
Sbjct: 84 NVEYNVASFSSGERKLKMKRDKRMLEIASIIKRTFEPVVMTSTFPRSEIDIYVQILQLDG 143
>gi|295667607|ref|XP_002794353.1| 3' exoribonuclease family protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226286459|gb|EEH42025.1| 3' exoribonuclease family protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 350
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 30/159 (18%)
Query: 20 PTRKTRPPIFSGS--------DVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEFGN 70
P+ TRPP+F+ S + RP SR + R F +TG + SASGSAY EF
Sbjct: 10 PSGDTRPPVFASSLLASDNRRSIALERPIRSRKPDELRKIFLKTGLIPSASGSAYLEFQT 69
Query: 71 T------------------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG-- 110
+ K+ +V GP+ ++ +S L+ +V + FAT R
Sbjct: 70 STILPRSKLKTLIPPSSSLKLTCTVHGPKPLPRSAPFSPNLLLSTHVKFAPFATRRRRSY 129
Query: 111 -QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ + +D L AL+G II E +PK+ +D+ +LE
Sbjct: 130 IRDVNERDLGVHLETALKGVIIGERWPKSGLDITVTILE 168
>gi|218201746|gb|EEC84173.1| hypothetical protein OsI_30553 [Oryza sativa Indica Group]
gi|222641142|gb|EEE69274.1| hypothetical protein OsJ_28540 [Oryza sativa Japonica Group]
Length = 242
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGRL 95
R D R ++ R G V A GSA E GNT+VI +V+GPRE +K + S +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKDALV 70
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C F+T R + D + + S ++ + +E +I+ P++ +D+F VL++ G
Sbjct: 71 RCEYRMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIFVQVLQADG 130
>gi|448103137|ref|XP_004199958.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
gi|359381380|emb|CCE81839.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
Length = 244
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R SA GS+Y E GNTKVI V GP+E S K+ S+
Sbjct: 12 LRVDGRRWNELRRFDCRINTHPQSADGSSYVEQGNTKVICMVSGPKEPSNKSQQNSSGAV 71
Query: 95 LNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ NVS +F+T R + S ++ + ++ L + E +II + +P+TT+ V VL
Sbjct: 72 VEFNVSIASFSTTNRKKRSKNEKRIIELNTTLERTFEQSIIRKLYPRTTISVNLHVLAQD 131
Query: 151 G 151
G
Sbjct: 132 G 132
>gi|148697598|gb|EDL29545.1| exosome component 4, isoform CRA_b [Mus musculus]
Length = 271
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 39 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 98
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 99 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 158
>gi|346977346|gb|EGY20798.1| 3' exoribonuclease family protein [Verticillium dahliae VdLs.17]
Length = 291
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 19/127 (14%)
Query: 41 SRGFHQCRPA------FFRTGAVNSASGSAYAEF----------GNTKVIVSVFGPRESK 84
SR + RPA F +TG +ASGSAYAE K+I +V GPR
Sbjct: 26 SRNSSRLRPANTMRNLFLKTGIAPAASGSAYAEIEAPAGVSDTHAGMKLICTVHGPRALP 85
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
++ +S L+ +V Y FAT R + + +D S L AL G +I E +PK+ +D
Sbjct: 86 RSAPFSPYLVLSTHVKYAPFATRQRRGYLRDASERDLSVHLETALRGVVIGERWPKSGLD 145
Query: 142 VFALVLE 148
V +LE
Sbjct: 146 VTVTILE 152
>gi|225680115|gb|EEH18399.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
Pb03]
Length = 350
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 30/159 (18%)
Query: 20 PTRKTRPPIFSGS--------DVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEFGN 70
P+ TRPP+F+ S + RP SR + R F +TG + SASGSAY EF
Sbjct: 10 PSGDTRPPVFASSLLASNNRRSIALERPIRSRKPDELRKIFLKTGLIPSASGSAYLEFQT 69
Query: 71 T------------------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG-- 110
+ K+ +V GP+ ++ +S L+ +V + FAT R
Sbjct: 70 STNLPRSKLKTLIPPSSSLKLTCAVHGPKPLPRSAPFSPNLLLSTHVKFAPFATRRRRGY 129
Query: 111 -QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ + +D L AL+G II E +PK+ +D+ +LE
Sbjct: 130 IRDVNERDLGVHLETALKGVIIGERWPKSGLDITVTILE 168
>gi|320167933|gb|EFW44832.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 229
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 14/112 (12%)
Query: 54 TGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA---MMYSNIGRLNCNVSYTTFATPIRG 110
TG V+ A+GSAY E T+V+ +V+GPRE+ +A ++ L C+V+ FA+P
Sbjct: 3 TGTVSHANGSAYLELAGTRVMAAVYGPRENTRAGGLQQFNEQAVLQCDVARAPFASPRDD 62
Query: 111 Q--GSD--------HKDFSSMLHKALEGAIILETFPKTTVDVFALVL-ESGG 151
G+D + F++ + AL+ ++ LE + K+++D+F ++ + GG
Sbjct: 63 ARIGTDANTSAAAADRQFATSVATALQSSVRLEKYAKSSIDLFVTIIGDDGG 114
>gi|29611663|ref|NP_780608.1| exosome complex component RRP41 [Mus musculus]
gi|21759405|sp|Q921I9.3|EXOS4_MOUSE RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|15126706|gb|AAH12277.1| Exosome component 4 [Mus musculus]
gi|26354721|dbj|BAC40987.1| unnamed protein product [Mus musculus]
gi|74184267|dbj|BAE25679.1| unnamed protein product [Mus musculus]
gi|74198393|dbj|BAE39680.1| unnamed protein product [Mus musculus]
Length = 245
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>gi|391326561|ref|XP_003737781.1| PREDICTED: exosome complex component RRP41-like [Metaseiulus
occidentalis]
Length = 247
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
+ R D R + R G A GSAY + GNT V+ +V+GP E + + + R
Sbjct: 10 EGFRVDGRRAQEMRKLDCSLGVFAQADGSAYVKEGNTVVLAAVYGPHEVRGGRVKALHDR 69
Query: 95 --LNCNVSYTTFATPIRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLE 148
+NC S TF+T R + D K LH + E AI+ + +P+ +D+F VL+
Sbjct: 70 AVVNCQFSAATFSTAERKRRPRGDTKSVEMTLHLQQTFETAILTKLYPRCQIDIFVEVLQ 129
Query: 149 SGG 151
+ G
Sbjct: 130 ADG 132
>gi|242091341|ref|XP_002441503.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
gi|241946788|gb|EES19933.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
Length = 242
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGRL 95
R D R ++ R G V A GSA E GNT+VI +V+GPRE +K + SN +
Sbjct: 11 RVDGRRPNEMRQLKGEVGIVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEALV 70
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C F+T R + D + + S ++ + +E +I+ P + +D++ VL++ G
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVLQADG 130
>gi|452978876|gb|EME78639.1| hypothetical protein MYCFIDRAFT_56888 [Pseudocercospora fijiensis
CIRAD86]
Length = 317
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 66/150 (44%), Gaps = 21/150 (14%)
Query: 20 PTRKTRPPIF-SGSDVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF--------- 68
P T PP+F + D RP +R + R F RTG V SASGSAY E
Sbjct: 11 PAGGTAPPVFITPKDSQIQRPRRTRKPDEHRKIFLRTGVVPSASGSAYYEISPHPPTEAK 70
Query: 69 -------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDF 118
N K+ +V GPR + +S L +V + FAT R + S +D
Sbjct: 71 QFLTPDASNLKITCTVHGPRPLPRNAAFSPNLLLTTHVKFAPFATRQRRGYVRDSSERDL 130
Query: 119 SSMLHKALEGAIILETFPKTTVDVFALVLE 148
L AL G II + +PK+ +V VLE
Sbjct: 131 GVHLETALRGVIIGDRWPKSGCEVVITVLE 160
>gi|357132600|ref|XP_003567917.1| PREDICTED: exosome complex component RRP41-like [Brachypodium
distachyon]
Length = 242
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGRL 95
R D R ++ R G V+ A GSA E GNT+VI +V+GPRE ++ + S +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVSRADGSALFEMGNTRVIAAVYGPREVQNRSQQVNSKEALV 70
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C F+T R + D + + S ++ + +E +I+ P + +D+F VL++ G
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIFVQVLQADG 130
>gi|116195962|ref|XP_001223793.1| hypothetical protein CHGG_04579 [Chaetomium globosum CBS 148.51]
gi|88180492|gb|EAQ87960.1| hypothetical protein CHGG_04579 [Chaetomium globosum CBS 148.51]
Length = 286
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 20 PTRKTRPPIFSGSDVDWLRP---DSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT----- 71
P T PP+F L+ SR + R + +TG SASGSAY E +
Sbjct: 10 PAGATIPPVFDDVSTQKLKSPKTRSRPPNTTRKMYLKTGVTPSASGSAYLEIETSATPGV 69
Query: 72 ---KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIR-GQGSD--HKDFSSMLHKA 125
K+ SV GPR ++ +S L+ +V Y FAT R G D +D L A
Sbjct: 70 SGLKLSCSVHGPRSLPRSAPFSPHIVLSTHVKYAPFATKQRRGYLRDPSERDLGIHLEAA 129
Query: 126 LEGAIILETFPKTTVDVFALVLE 148
L GAII + +PK+ VD+ ++E
Sbjct: 130 LRGAIIADRWPKSGVDIIISIVE 152
>gi|398392563|ref|XP_003849741.1| hypothetical protein MYCGRDRAFT_16557, partial [Zymoseptoria
tritici IPO323]
gi|339469618|gb|EGP84717.1| hypothetical protein MYCGRDRAFT_16557 [Zymoseptoria tritici IPO323]
Length = 285
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 68/150 (45%), Gaps = 21/150 (14%)
Query: 20 PTRKTRPPIFSGS-DVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF--------- 68
P T PP+F+ D++ RP +R + R F RTG V SASGSAY E
Sbjct: 8 PPGGTAPPVFATPPDLNLSRPTRTRQPDEHRKIFLRTGVVPSASGSAYYEIPPETPSTSN 67
Query: 69 -------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDF 118
+ K+ +V GPR + +S L +V + FAT R + + +D
Sbjct: 68 DILVPSSSSLKITCTVHGPRPLPRNAAFSPNMLLTTHVKFAPFATRQRRGYVRDASERDL 127
Query: 119 SSMLHKALEGAIILETFPKTTVDVFALVLE 148
L AL G II E +PK+ +V VLE
Sbjct: 128 GVHLETALRGVIIGERWPKSGCEVVITVLE 157
>gi|91772267|ref|YP_564959.1| exosome complex exonuclease Rrp41 [Methanococcoides burtonii DSM
6242]
gi|91711282|gb|ABE51209.1| Archaeal exosome complex RNA-binding protein [Methanococcoides
burtonii DSM 6242]
Length = 343
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMY--- 89
D + LR D R + RP G ++ A GS Y E+GN KV+ +V+GPRE +
Sbjct: 10 DENGLRLDGRRVDEIRPMTVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRLQRPS 69
Query: 90 SNIGRLNCNVSYTTFATPIR-GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ R N++ + IR G + S + +A E ++ + +P +DVFA VL+
Sbjct: 70 EALVRYRYNMAAFSVEDRIRPGPSRRSTEISKVSGEAFETVVMKQFYPGAVIDVFAEVLQ 129
Query: 149 S 149
+
Sbjct: 130 A 130
>gi|149236726|ref|XP_001524240.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451775|gb|EDK46031.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 244
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R NS+ GS+Y E GNTKVI +V GP E + +A M +
Sbjct: 12 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVICTVIGPMEPTSRAQMNQDRAN 71
Query: 95 LNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ N++ F+T R + S + + + L + E I+L +P+T + + VL
Sbjct: 72 VEVNLTIANFSTFERKKRSKTEKRLVELRTTLERTFEQLILLHLYPRTNITINVQVLNQD 131
Query: 151 G 151
G
Sbjct: 132 G 132
>gi|401399709|ref|XP_003880615.1| putative 3' exoribonuclease [Neospora caninum Liverpool]
gi|325115026|emb|CBZ50582.1| putative 3' exoribonuclease [Neospora caninum Liverpool]
Length = 214
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
R +T ++ A+GSA+ G TK+ +V+GPR + KA + G +N Y FAT
Sbjct: 2 RTMCLQTHSLAGATGSAFVSVGKTKLNCAVYGPRPNTKA-ASQDRGSINLEFKYAPFATT 60
Query: 108 IRGQGS--DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+G + D ++LH+A+ + L+ + K+T+ V LVLE G
Sbjct: 61 SKGACNERDSAHLVTLLHQAVNAVVRLDLYRKSTIAVSVLVLEDDG 106
>gi|310798246|gb|EFQ33139.1| 3' exoribonuclease [Glomerella graminicola M1.001]
Length = 291
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF----------- 68
P T PP++ + P +R + R F +TG +ASGSAY E
Sbjct: 10 PPGATLPPVYDTVSSNST-PRARPANGIRGLFLKTGVTPTASGSAYMEIEPPHSHVKSKS 68
Query: 69 --GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLH 123
K+I +V GPR ++ +S L+ +V Y FAT R + S +D L
Sbjct: 69 KTNGMKLICTVHGPRSLPRSAPFSPYLVLSTHVKYAPFATRQRRSYLRDSSERDIGVHLD 128
Query: 124 KALEGAIILETFPKTTVDVFALVLE 148
AL G II + +PK+ VDV ++E
Sbjct: 129 TALRGVIIADRWPKSGVDVIVTIVE 153
>gi|145592134|ref|YP_001154136.1| exosome complex exonuclease Rrp41 [Pyrobaculum arsenaticum DSM
13514]
gi|379003148|ref|YP_005258820.1| archaeal exosome-like complex exonuclease 1 [Pyrobaculum oguniense
TE7]
gi|254782535|sp|A4WM67.1|ECX1_PYRAR RecName: Full=Probable exosome complex exonuclease 1
gi|145283902|gb|ABP51484.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
arsenaticum DSM 13514]
gi|375158601|gb|AFA38213.1| archaeal exosome-like complex exonuclease 1 [Pyrobaculum oguniense
TE7]
Length = 246
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
+R D R Q R G V++A GSA +G T + +V+GPRE + + + G +
Sbjct: 13 VRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72
Query: 96 NCNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
F+T + + S +L +ALE A++LE +P++ +DVF ++++ G
Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQADG 132
>gi|156550959|ref|XP_001603897.1| PREDICTED: exosome complex component RRP41-like [Nasonia
vitripennis]
Length = 270
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KA---MMYSNI 92
LR D R + R R G A GSAY E G TK++ +V+GP + + KA + +
Sbjct: 12 LRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQPRGKANANALKAVK 71
Query: 93 GRLNCNVSYTTFATPIRGQGSDHK---------DFSSMLHKALEGAIILETFPKTTVDVF 143
G +NC S F+ G G K + S L A+E I LE F ++ +D+F
Sbjct: 72 GIVNCQYSTAVFSF---GAGERKKKPRGDRKSQERSQQLRHAMEAIINLELFARSQIDIF 128
Query: 144 ALVLESGG 151
VL+ G
Sbjct: 129 VEVLQVDG 136
>gi|242793419|ref|XP_002482157.1| 3' exoribonuclease family protein [Talaromyces stipitatus ATCC
10500]
gi|218718745|gb|EED18165.1| 3' exoribonuclease family protein [Talaromyces stipitatus ATCC
10500]
Length = 339
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 72/158 (45%), Gaps = 30/158 (18%)
Query: 20 PTRKTRPPIFS-------GSDVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEFG-- 69
P TRPP+++ G + RP +R + R F +TG + SASGS+Y E
Sbjct: 10 PPSGTRPPVYASLLRNAAGEKAE--RPRRARKPTELRKIFLKTGLIPSASGSSYLEIEPA 67
Query: 70 ----NT-----------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---Q 111
NT K+ +V GPR ++ YS L +V Y FA R +
Sbjct: 68 RRPTNTRESLIAPATSLKIACAVHGPRPLPRSANYSPNLLLTTHVKYAPFAHRRRKGHIR 127
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ +D L A+ GAII E +PK+ +DV VLE+
Sbjct: 128 DASERDLGVHLETAIRGAIIAERWPKSALDVTITVLEA 165
>gi|239614072|gb|EEQ91059.1| 3' exoribonuclease [Ajellomyces dermatitidis ER-3]
gi|327353426|gb|EGE82283.1| 3' exoribonuclease [Ajellomyces dermatitidis ATCC 18188]
Length = 350
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 20 PTRKTRPPIFSGS--------DVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF-- 68
P TRPP+F+ S V RP +R + R F +TG + SASGSAY EF
Sbjct: 10 PPGSTRPPVFASSLLSSDGQRSVALERPIRTRKPDELRKIFLKTGLIPSASGSAYLEFQP 69
Query: 69 ----------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG-- 110
+ K+ SV GP+ ++ +S L+ +V + FA+ R
Sbjct: 70 SAILHRSKSKTLIPPSSSLKLTCSVHGPKPLPRSAPFSPNLLLSTHVKFAPFASRRRRGY 129
Query: 111 -QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ + +D L AL G II E +PK+ +D+ VLE
Sbjct: 130 IRDVNERDLGVHLETALRGVIIGERWPKSGLDITVTVLE 168
>gi|261204769|ref|XP_002629598.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
gi|239587383|gb|EEQ70026.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
Length = 350
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 20 PTRKTRPPIFSGS--------DVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF-- 68
P TRPP+F+ S V RP +R + R F +TG + SASGSAY EF
Sbjct: 10 PPGSTRPPVFASSLLSSDGQRSVALERPIRTRKPDELRKIFLKTGLIPSASGSAYLEFQP 69
Query: 69 ----------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG-- 110
+ K+ SV GP+ ++ +S L+ +V + FA+ R
Sbjct: 70 SAILHRSKSKTLIPPSSSLKLTCSVHGPKPLPRSAPFSPNLLLSTHVKFAPFASRRRRGY 129
Query: 111 -QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ + +D L AL G II E +PK+ +D+ VLE
Sbjct: 130 IRDVNERDLGVHLETALRGVIIGERWPKSGLDITVTVLE 168
>gi|424814253|ref|ZP_18239431.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus Nanosalina
sp. J07AB43]
gi|339757869|gb|EGQ43126.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus Nanosalina
sp. J07AB43]
Length = 253
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D D R D R + R G + A GSA E GNT+VI SVFGP++ K + S+
Sbjct: 10 DDDGNRVDGRKADELRETEMEVGVLEEADGSAMVEIGNTRVIASVFGPQDLHPKHLQESD 69
Query: 92 IGRLNCNVSYTTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ + F+ R G ++ + AL+ A+ LE FP +D+ V+E
Sbjct: 70 RAVIKMRYNMAPFSVDDRMSPGPNRRAQEIELVAKNALKPALELERFPTAGIDISMEVVE 129
Query: 149 SGG 151
S G
Sbjct: 130 SDG 132
>gi|85108995|ref|XP_962696.1| hypothetical protein NCU08026 [Neurospora crassa OR74A]
gi|28924307|gb|EAA33460.1| conserved hypothetical protein [Neurospora crassa OR74A]
gi|39979134|emb|CAE85508.1| conserved hypothetical protein [Neurospora crassa]
Length = 286
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 71/147 (48%), Gaps = 22/147 (14%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFH--QCRPA------FFRTGAVNSASGSAYAEF--- 68
P T PPI+ D S GF + RPA + +TG SASGSAY E
Sbjct: 10 PVGTTNPPIYD----DAPEKQSEGFKVTRSRPANVIRKMYLKTGVTPSASGSAYLEIESS 65
Query: 69 GN----TKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIR-GQGSD--HKDFSSM 121
GN K+ SV GPR ++ +S L+ +V + FAT R G D +D +
Sbjct: 66 GNGGSGLKLSCSVHGPRALPRSTPFSPHIILSTHVKFAPFATKQRRGYIRDPIERDLGTH 125
Query: 122 LHKALEGAIILETFPKTTVDVFALVLE 148
L AL G+II + +PK+ VD+ ++E
Sbjct: 126 LETALRGSIIADRWPKSGVDIIISIVE 152
>gi|403349665|gb|EJY74273.1| RNase PH [Oxytricha trifallax]
Length = 252
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 10/130 (7%)
Query: 32 SDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK------ 85
+D LR + R + R + G + + SGSA E GNTKV+ + GP + +
Sbjct: 8 NDESTLRMNGRKLLEIRDIKCQLGVMKNTSGSALFEIGNTKVVAFLQGPHQITQRQAQSL 67
Query: 86 AMMYSNIGRLNCNVSYTTF-ATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
+ SN G LN N T F A R + + K+F+ M+ E I L+ +P++ +D
Sbjct: 68 GVNQSNRGILNVNFFVTNFSAIEHRADVKKDAKMKEFTRMIKSVFEQVIQLDLYPRSQLD 127
Query: 142 VFALVLESGG 151
+ VLES G
Sbjct: 128 LQVFVLESDG 137
>gi|150864479|ref|XP_001383313.2| exosome exoribonuclease [Scheffersomyces stipitis CBS 6054]
gi|149385735|gb|ABN65284.2| exosome exoribonuclease [Scheffersomyces stipitis CBS 6054]
Length = 289
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 29/128 (22%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR--------------ESK--------K 85
RP F +TG + +A+GS+Y E GN + VSV+GPR E K
Sbjct: 39 RPFFLKTGIIENANGSSYLEVGNNIIEVSVYGPRPIRGSFIDRASFSVECKFLPFISQPN 98
Query: 86 AMMYSNIGRLNCNVSYTTFATPIRGQGS------DHKDFSSMLHKALEGAIILETFPKTT 139
+Y+N + + TT T + G +HK SS + +L +I+LE +PK+T
Sbjct: 99 EHLYNNTSISASSAANTTNQTNVNVNGRTGLTSIEHK-ISSYIETSLLPSIVLEKYPKST 157
Query: 140 VDVFALVL 147
+DVF ++
Sbjct: 158 IDVFVTII 165
>gi|448529118|ref|XP_003869792.1| hypothetical protein CORT_0E00700 [Candida orthopsilosis Co 90-125]
gi|380354146|emb|CCG23659.1| hypothetical protein CORT_0E00700 [Candida orthopsilosis]
Length = 244
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSAS-GSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R S+S GS+Y E GNTKVI +V GP E S +A M +
Sbjct: 12 LRIDGRRWNELRRFECRINTHPSSSDGSSYVEQGNTKVICTVQGPIEPSSRAQMNQDKAN 71
Query: 95 LNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L N++ F+T R + S + + + L + E +I+L +P+T + + VL
Sbjct: 72 LEVNLTIANFSTFERKKRSKSEKRMVELRTTLERTFEQSILLHLYPRTNITINVQVLSQD 131
Query: 151 G 151
G
Sbjct: 132 G 132
>gi|342885065|gb|EGU85174.1| hypothetical protein FOXB_04289 [Fusarium oxysporum Fo5176]
Length = 283
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNT--------KVIVSVFGPRESKKAMMYSNI 92
+R + R + +TG SASGSAY E + K+ +V GPR ++ +S
Sbjct: 30 TRAPNGIRSQYLQTGLTPSASGSAYLEIESQQDSSSKGMKLSCTVHGPRSLPRSAPFSPH 89
Query: 93 GRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L+ +V Y FAT R + S +D S+ L AL GA+I + +PK+ VDV ++E
Sbjct: 90 MVLSTHVKYAPFATRQRRGYLRDSTERDLSTHLEAALRGALIADRWPKSGVDVVVTIIE 148
>gi|294654809|ref|XP_456890.2| DEHA2A12914p [Debaryomyces hansenii CBS767]
gi|199429165|emb|CAG84867.2| DEHA2A12914p [Debaryomyces hansenii CBS767]
Length = 302
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 45 HQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC------- 97
+ R F ++G V +A+GSAY E G+T + VSVFGPR + + + + C
Sbjct: 56 DEVRKMFLKSGLVTNANGSAYLEVGDTIIEVSVFGPRPIRGSFIDRASFSVECKFLPYVT 115
Query: 98 ---NVSYTTFATPIRGQG-----SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
+++ AT G + + SS L +L I+LE +PK+T+D+F V+
Sbjct: 116 QPNEITFNGKATNFNNNGRPSLTNIEQKISSYLETSLLPCILLEKYPKSTIDIFVSVI 173
>gi|354547529|emb|CCE44264.1| hypothetical protein CPAR2_400650 [Candida parapsilosis]
Length = 241
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R NS+ GS+Y E GNTKVI +V GP E +A M +
Sbjct: 9 LRIDGRRWNELRRFECRVNTHPNSSDGSSYVEQGNTKVICTVQGPTEPISRAQMNQDKAN 68
Query: 95 LNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L N++ F+T R + S + + + L + E +++L +P+T + + VL
Sbjct: 69 LEVNLTIANFSTFERKKRSKSEKRMVELRTTLERTFEQSVLLHLYPRTNITINVQVLSQD 128
Query: 151 G 151
G
Sbjct: 129 G 129
>gi|393221006|gb|EJD06491.1| exosome component 4 [Fomitiporia mediterranea MF3/22]
Length = 284
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 13/147 (8%)
Query: 18 IDPTRKTRPPIF---SGSDVDWL-----RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFG 69
++ T K+R P S S V+ L R D R H+ R A GSA G
Sbjct: 6 VERTIKSRWPNLATTSASRVEILNDGGYRSDGRRQHELRDFNIDLAVRGQADGSAMVSQG 65
Query: 70 NTKVIVSVFGPRESKK-AMMYSNIGRLNCNVSYTTFATPIRGQGSDHK----DFSSMLHK 124
T+V+V+VFGPRE++ N +N V+ +F+T R + S + +F++ +
Sbjct: 66 LTQVLVTVFGPREARSPTQRIHNRAFINVEVNIASFSTSERRKRSRNDKRVLEFAAAIKS 125
Query: 125 ALEGAIILETFPKTTVDVFALVLESGG 151
E I +P++ +D+F VL+ G
Sbjct: 126 TFEPVIQTHLYPRSEIDIFVQVLQQDG 152
>gi|212721602|ref|NP_001131612.1| RNase PH homolog [Zea mays]
gi|194692034|gb|ACF80101.1| unknown [Zea mays]
gi|413948419|gb|AFW81068.1| exosome complex exonuclease RRP41 isoform 1 [Zea mays]
gi|413948420|gb|AFW81069.1| exosome complex exonuclease RRP41 isoform 2 [Zea mays]
gi|413948421|gb|AFW81070.1| exosome complex exonuclease RRP41 isoform 3 [Zea mays]
gi|413948422|gb|AFW81071.1| exosome complex exonuclease RRP41 isoform 4 [Zea mays]
Length = 242
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGRL 95
R D R ++ R G V A GSA E GNT+VI +V+GPRE +K + S +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEALV 70
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C F+T R + D + + S ++ + +E +I+ P + +D++ VL++ G
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVLQADG 130
>gi|115388037|ref|XP_001211524.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195608|gb|EAU37308.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 246
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 30/159 (18%)
Query: 20 PTRKTRPPIFSGSDVDWL-----RPD-SRGFHQCRPAFFRTGAVNSASGSAYAEFGNT-- 71
P TRPP+F+ S ++ + RP R ++ R F +TG + SASGSAY EF +
Sbjct: 10 PPSGTRPPVFASS-LNAVPGAATRPQRQRQPNELRKIFLKTGLIPSASGSAYLEFEPSPS 68
Query: 72 ------------------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG--- 110
K+ +V GP+ ++ +S L +V Y FA R
Sbjct: 69 LAAARSNPKSLIPPSSALKLACTVHGPKPLPRSATFSPNLVLTTHVKYAPFAARQRKGHI 128
Query: 111 QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ + +D L AL G I+ E +PK+ +D+ +LE+
Sbjct: 129 RDASERDLGVHLETALRGVIVAERWPKSGLDITITILEA 167
>gi|169762716|ref|XP_001727258.1| 3' exoribonuclease family protein [Aspergillus oryzae RIB40]
gi|83770286|dbj|BAE60419.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391866699|gb|EIT75967.1| 3' exoribonuclease family protein [Aspergillus oryzae 3.042]
Length = 324
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 29/159 (18%)
Query: 20 PTRKTRPPIF-----SGSDVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF----- 68
P TRP +F S SD+ RP R ++ R F +TG + SASGSAY E+
Sbjct: 10 PPSGTRPAVFASSLNSASDIATGRPQRQRQPNELRKIFLKTGLIPSASGSAYLEYEPSAS 69
Query: 69 ---------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG--- 110
K+ +V GP+ ++ +S L ++ Y FA R
Sbjct: 70 LAAARSSPKSLIPPSSALKLACTVHGPKPLPRSATFSPNLVLTTHIKYAPFAARKRKGHI 129
Query: 111 QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ + +D L AL G I+ E +PK+ +D+ +LE+
Sbjct: 130 RDASERDLGVHLETALRGVIVAERWPKSGLDITITILEA 168
>gi|452003009|gb|EMD95466.1| hypothetical protein COCHEDRAFT_1151589 [Cochliobolus
heterostrophus C5]
Length = 327
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 24/153 (15%)
Query: 20 PTRKTRPPIFSGSD-----VDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF----- 68
P+ T P+F+ + V+ LRP SRG ++ R F +T + SASGSAY E
Sbjct: 13 PSGGTSAPVFARTIREPQYVEKLRPTRSRGLNELRRIFLQTSIIPSASGSAYLEIPSSSA 72
Query: 69 ----------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDH 115
+ K+ S+ GP+ ++ +S L V + FAT R + +
Sbjct: 73 ANHSSLIAPTSSLKITASIQGPKPLPRSAPFSPSLLLTTTVKFAPFATRHRRGYLRDATE 132
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+D L AL G II E +PK+ V+V +LE
Sbjct: 133 RDLGVHLETALRGVIIGERWPKSGVEVVVTILE 165
>gi|195622232|gb|ACG32946.1| exosome complex exonuclease RRP41 [Zea mays]
Length = 242
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGRL 95
R D R ++ R G V A GSA E GNT+VI +V+GPRE +K + S +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVVRADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEALV 70
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C F+T R + D + + S ++ + +E +I+ P + +D++ VL++ G
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVLQADG 130
>gi|327305819|ref|XP_003237601.1| 3' exoribonuclease [Trichophyton rubrum CBS 118892]
gi|326460599|gb|EGD86052.1| 3' exoribonuclease [Trichophyton rubrum CBS 118892]
Length = 335
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 25/154 (16%)
Query: 20 PTRKTRPPIF----SGSD--VDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF---- 68
P TR P+F +G D + RP +R + R + +TG + SASGSAY E
Sbjct: 10 PAGATRAPVFVSCAAGKDKSAAFERPTRTRDARELRKIYLKTGVIPSASGSAYFELHPSN 69
Query: 69 -----------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSD 114
+ K+I SV GP+ ++ +S L+ +V + FA R + ++
Sbjct: 70 SSPGGSLIPPSSSLKLICSVNGPKPLSRSTPFSPNLLLSAHVKFAPFANRRRRAHVRDTN 129
Query: 115 HKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+D L AL GAII + +PK+ +D+ ++LE
Sbjct: 130 ERDLGVHLENALRGAIIGDRWPKSGLDITIMILE 163
>gi|337283874|ref|YP_004623348.1| exosome complex exonuclease Rrp41 [Pyrococcus yayanosii CH1]
gi|334899808|gb|AEH24076.1| exosome complex exonuclease Rrp41 [Pyrococcus yayanosii CH1]
Length = 249
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
+P D + R D R ++ RP G + +A GSAY E+G K++ +V+GPRE
Sbjct: 4 KPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIH 63
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A++LE FP+T +
Sbjct: 64 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALLLELFPRTAI 123
Query: 141 DVFALVLES 149
D+F VL++
Sbjct: 124 DIFIEVLQA 132
>gi|159474468|ref|XP_001695347.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
gi|158275830|gb|EDP01605.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
Length = 245
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R + +++A GSA E GNTKV+ +VFGP ++++ +
Sbjct: 7 EGLRLDGRRPRELRRINCQLDVLSNADGSAIFEMGNTKVLAAVFGPHAVTRRSELREEGA 66
Query: 94 RLNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T R + + S ++ LE A+I E P++ +DV+ VL++
Sbjct: 67 LVVCEYSMAAFSTGERRRRGKGDRRSTELSMVIRNTLEQAVITELLPRSQIDVYVQVLQA 126
Query: 150 GG 151
G
Sbjct: 127 DG 128
>gi|429850755|gb|ELA25998.1| 3 exoribonuclease family protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 268
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 51 FFRTGAVNSASGSAYAEF-------------GNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
+TG +ASGSAY E K+I +V GPR ++ +S L+
Sbjct: 22 VLKTGVAPTASGSAYMEIEPPQLQANPIANANGMKLICTVHGPRSLPRSTPFSPYLVLST 81
Query: 98 NVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+V Y FAT R + S +D S L AL GAII + +PK+ VDV ++E
Sbjct: 82 HVKYAPFATRQRRGYLRDSSERDLSVHLDTALRGAIIADRWPKSGVDVIVTIIE 135
>gi|308802860|ref|XP_003078743.1| ribonuclease PH (ISS) [Ostreococcus tauri]
gi|116057196|emb|CAL51623.1| ribonuclease PH (ISS) [Ostreococcus tauri]
Length = 693
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 60 ASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP-----IRGQGSD 114
ASGS+Y E GNTKV +V+GPR + + N G ++ +V FA RG+ ++
Sbjct: 484 ASGSSYVELGNTKVSCAVYGPRRPRVDDLTVNTGVIDVDVFRVPFARKRAIHVERGRENE 543
Query: 115 HK----------DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + S+ + L + ETFP+ VDV+ +++S G
Sbjct: 544 REKDLNRSAADVELSARIADVLRACALTETFPRAQVDVYVTIMDSDG 590
>gi|121716694|ref|XP_001275883.1| 3' exoribonuclease family protein [Aspergillus clavatus NRRL 1]
gi|119404040|gb|EAW14457.1| 3' exoribonuclease family protein [Aspergillus clavatus NRRL 1]
Length = 319
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 28/158 (17%)
Query: 20 PTRKTRPPIFSGS----DVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF------ 68
P TRP +F+ S RP R ++ R F +TG + SASGSAY EF
Sbjct: 10 PPSGTRPAVFASSLKTTGAAPTRPQRQRKPNELRKIFIKTGLIPSASGSAYLEFEPSASL 69
Query: 69 --------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---Q 111
K+ +V GP+ ++ +S L +V Y FA R +
Sbjct: 70 AAARSSPQSLIPPSSALKLACTVHGPKPLPRSATFSPNLVLTTHVKYAPFAARRRKGHIR 129
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S +D L AL GAII E +PK+ +D+ +LE+
Sbjct: 130 DSSERDLGVHLETALRGAIIAERWPKSGLDITITILEA 167
>gi|430812511|emb|CCJ30094.1| unnamed protein product [Pneumocystis jirovecii]
gi|430814626|emb|CCJ28166.1| unnamed protein product [Pneumocystis jirovecii]
Length = 273
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 53 RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQG 112
+TG + A GSAY E K++ +V+GP++ K A +S+ L C V Y FA + G
Sbjct: 2 KTGLITKADGSAYLEQERIKMVSAVYGPQQLKNA-PFSSSASLVCEVKYAPFALK-QKYG 59
Query: 113 SD----HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ KD S L A+ +I L+ PK+ + ++ VLE+ G
Sbjct: 60 CNREIIEKDMSLHLEAAISPSIQLDILPKSVIHIYVFVLEADG 102
>gi|296804100|ref|XP_002842902.1| 3' exoribonuclease family protein [Arthroderma otae CBS 113480]
gi|238845504|gb|EEQ35166.1| 3' exoribonuclease family protein [Arthroderma otae CBS 113480]
Length = 336
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 27/156 (17%)
Query: 20 PTRKTRPPIF-SGSD-------VDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF-- 68
P TR P+F S SD + RP +R + R + +TG + SASGSAY E
Sbjct: 10 PAGGTRAPVFVSCSDSKDKSQSATFERPSRTRRAKELRKIYLKTGVIPSASGSAYLELHP 69
Query: 69 ----GNT---------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QG 112
NT K+I SV GP+ ++ +S L+ +V + FA R +
Sbjct: 70 SNPSANTSLIPPASSLKLICSVNGPKPLPRSAPFSPNLLLSAHVKFAPFANRRRRAHIRD 129
Query: 113 SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ +D L AL GAII + +PK+ +DV ++LE
Sbjct: 130 MNERDLGVHLENALRGAIIGDRWPKSGLDVTVMILE 165
>gi|406603483|emb|CCH45039.1| Polyribonucleotide nucleotidyltransferase [Wickerhamomyces
ciferrii]
Length = 245
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R NS+ GS+Y E GN+K++ V GP E KA + +
Sbjct: 12 LRMDGRRWNELRRFDCRINTHPNSSDGSSYVEQGNSKIVCIVNGPMEPPTKAQLSTTGAT 71
Query: 95 LNCNVSYTTFATPIRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
LN N++ T F++ R + S + ++ + L + E +II++ +P+TT+ + VL
Sbjct: 72 LNLNLNVTPFSSIDRKKRSKNERRIQEIITSLKRTFEQSIIIDKYPRTTISINVHVLSLD 131
Query: 151 G 151
G
Sbjct: 132 G 132
>gi|209877665|ref|XP_002140274.1| 3' exoribonuclease protein [Cryptosporidium muris RN66]
gi|209555880|gb|EEA05925.1| 3' exoribonuclease protein, putative [Cryptosporidium muris RN66]
Length = 295
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 68/131 (51%), Gaps = 17/131 (12%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
+++R DSR ++ RP +TG V + GSAY G T+V+ ++ GP+ +K ++ + IG
Sbjct: 43 NYIRNDSRIPNEVRPINIKTGTVATCDGSAYFSIGRTRVLCTINGPKLTKSSL--NEIG- 99
Query: 95 LNCNVSY--TTFATPIRGQGSDHK-----DF-------SSMLHKALEGAIILETFPKTTV 140
L+ V Y + F +R G+ +K D+ S L K ++ I E + + ++
Sbjct: 100 LSVTVDYRLSPFCKKMRQYGNINKSNLNTDYKAEEKYQSLTLEKVIQSIICREKYTRMSI 159
Query: 141 DVFALVLESGG 151
D + ++E G
Sbjct: 160 DCYIYIIEDDG 170
>gi|330930200|ref|XP_003302936.1| hypothetical protein PTT_14933 [Pyrenophora teres f. teres 0-1]
gi|311321403|gb|EFQ88972.1| hypothetical protein PTT_14933 [Pyrenophora teres f. teres 0-1]
Length = 327
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 22 RKTRPPIFSGSDVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF------------ 68
R R P + ++ LRP SRG ++ R F +T + SASGSAY E
Sbjct: 24 RTVREPQY----IEKLRPTRSRGPNELRRIFLQTSIIPSASGSAYLEIPSSSPCTTSSLI 79
Query: 69 ---GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSML 122
+ K+ S+ GP+ ++ +S L V + FAT R + S +D L
Sbjct: 80 PPTSSLKITASIQGPKPLPRSAPFSPSLLLTTTVKFAPFATRHRRGYIRDSTERDLGVHL 139
Query: 123 HKALEGAIILETFPKTTVDVFALVLE 148
AL G II E +PK+ V+V +LE
Sbjct: 140 ETALRGVIIGERWPKSGVEVVVTILE 165
>gi|67523393|ref|XP_659757.1| hypothetical protein AN2153.2 [Aspergillus nidulans FGSC A4]
gi|40745041|gb|EAA64197.1| hypothetical protein AN2153.2 [Aspergillus nidulans FGSC A4]
gi|259487532|tpe|CBF86279.1| TPA: 3' exoribonuclease family protein (AFU_orthologue;
AFUA_2G15980) [Aspergillus nidulans FGSC A4]
Length = 324
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 38/164 (23%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDS-----------RGFHQCRPAFFRTGAVNSASGSAYAEF 68
P TRPPIF+ S ++P + R ++ R F +TG + SASGS+Y EF
Sbjct: 10 PPGGTRPPIFASS----IKPTATATAAERPQRQRQPNELRKIFLKTGLIPSASGSSYLEF 65
Query: 69 --------------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPI 108
+ K+ +V GP+ ++ +S L +V Y FA
Sbjct: 66 EPSASLSAARASPKFITPPSSSLKLACTVHGPKPLPRSATFSPNLVLTTHVKYAPFAARK 125
Query: 109 RG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
R + + +D L AL G I+ E +PK+ +D+ +LE+
Sbjct: 126 RKGHIRDASERDLGVHLETALRGVIVAERWPKSGLDITITILEA 169
>gi|365760507|gb|EHN02222.1| Ski6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401840726|gb|EJT43427.1| SKI6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 246
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 11/124 (8%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
LR D R +++ R + T + ++A GS+Y E GN K+I V GP+E + K+ M ++
Sbjct: 12 LRLDGRRWNELRRFESSINTHS-HAADGSSYLEQGNNKIITLVKGPKEPRLKSQMDTSKA 70
Query: 94 RLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
LN +V+ T F+ R + S HK + + L + E ++L +P+T +D+ VL
Sbjct: 71 LLNVSVNITKFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVL 129
Query: 148 ESGG 151
E G
Sbjct: 130 EQDG 133
>gi|50550057|ref|XP_502501.1| YALI0D06776p [Yarrowia lipolytica]
gi|49648369|emb|CAG80689.1| YALI0D06776p [Yarrowia lipolytica CLIB122]
Length = 287
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 8/137 (5%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVF 78
P ++R I+S + LR D R +++ R + SA GS+Y E+G+TKV+ +V
Sbjct: 44 PLTQSRHEIYSP---EGLRTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTVD 100
Query: 79 GPRESKKAMMYSNIGRLNCNVSYTTFATP--IRGQGSDHK--DFSSMLHKALEGAIILET 134
GPRE ++ ++ NV+ +F+T I+ Q +D + + + ++ + LE A++ +
Sbjct: 101 GPREPDNRQNTTDRAVISVNVNVASFSTETRIKRQRNDKRLAEMNILIRQLLEEAVLTKL 160
Query: 135 FPKTTVDVFALVLESGG 151
P+T + V V+ G
Sbjct: 161 NPRTQIAVNITVIAQDG 177
>gi|440639242|gb|ELR09161.1| hypothetical protein GMDG_03739 [Geomyces destructans 20631-21]
Length = 343
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSR-----GFHQCRPAFFRTGAVNSASGSAYAEF------ 68
P+ T PP+F+GSD SR + R F +TG SASGSAY E
Sbjct: 35 PSCGTAPPLFTGSDGSSPETKSRLARTRAPNVIRKIFLKTGVTPSASGSAYLECESQPKS 94
Query: 69 ----------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIR---GQGSDH 115
K+ +V GPR ++ +S L +V Y FAT R +
Sbjct: 95 STPKLSSLSSSGIKISCTVHGPRPLPRSAPFSPHVVLAAHVKYAPFATRKRRGYQRYPGE 154
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+D + L AL G +I + +PK+ VDV +LE
Sbjct: 155 RDLAMHLETALRGVVIGDRWPKSGVDVVITILE 187
>gi|47848476|dbj|BAD22331.1| putative exosome component 4 [Oryza sativa Japonica Group]
gi|47848647|dbj|BAD22495.1| putative exosome component 4 [Oryza sativa Japonica Group]
Length = 245
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 25/139 (17%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-------------SK 84
R D R ++ R G V A GSA E GNT+VI +V+GPRE SK
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVAAHPDYWLVRLISK 70
Query: 85 KAMMYSNIGRLNCNVSYTT--------FATPIRGQ--GSDHK--DFSSMLHKALEGAIIL 132
KA GR VS +T F+T R + D + + S ++ + +E +I+
Sbjct: 71 KAKREGLRGRSRTKVSKSTAKMLWMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILT 130
Query: 133 ETFPKTTVDVFALVLESGG 151
P++ +D+F VL++ G
Sbjct: 131 HLMPRSQIDIFVQVLQADG 149
>gi|449295966|gb|EMC91987.1| hypothetical protein BAUCODRAFT_60118, partial [Baudoinia
compniacensis UAMH 10762]
Length = 298
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 66/146 (45%), Gaps = 21/146 (14%)
Query: 24 TRPPIFSG-SDVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF------------- 68
T PP F+ V RP +R + R + RTG V SASGSAY E
Sbjct: 14 TAPPAFATPKTVKLERPKRTRKPDEHRKIYLRTGIVPSASGSAYYEIPPQSDQKQSGLSL 73
Query: 69 ---GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSML 122
+ K+ +V GPR + +S L +V + FAT R + + +D + L
Sbjct: 74 PQTSSLKITCTVHGPRPLPRNAAFSPNLLLTTHVKFAPFATRHRRGYVRDASERDLAVHL 133
Query: 123 HKALEGAIILETFPKTTVDVFALVLE 148
AL G II E +PK+ V+V VLE
Sbjct: 134 ETALRGVIIGERWPKSGVEVVITVLE 159
>gi|398366099|ref|NP_011711.3| Ski6p [Saccharomyces cerevisiae S288c]
gi|1176073|sp|P46948.1|RRP41_YEAST RecName: Full=Exosome complex component SKI6; AltName:
Full=Extracellular mutant protein 20; AltName:
Full=Ribosomal RNA-processing protein 41; AltName:
Full=Superkiller protein 6
gi|791127|emb|CAA58018.1| G7587 [Saccharomyces cerevisiae]
gi|1323347|emb|CAA97221.1| unnamed protein product [Saccharomyces cerevisiae]
gi|45270908|gb|AAS56835.1| YGR195W [Saccharomyces cerevisiae]
gi|151943471|gb|EDN61782.1| superkiller [Saccharomyces cerevisiae YJM789]
gi|207345003|gb|EDZ71963.1| YGR195Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271491|gb|EEU06540.1| Ski6p [Saccharomyces cerevisiae JAY291]
gi|259146697|emb|CAY79954.1| Ski6p [Saccharomyces cerevisiae EC1118]
gi|285812388|tpg|DAA08288.1| TPA: Ski6p [Saccharomyces cerevisiae S288c]
gi|323304789|gb|EGA58548.1| Ski6p [Saccharomyces cerevisiae FostersB]
gi|323333367|gb|EGA74763.1| Ski6p [Saccharomyces cerevisiae AWRI796]
gi|323337488|gb|EGA78736.1| Ski6p [Saccharomyces cerevisiae Vin13]
gi|323348458|gb|EGA82703.1| Ski6p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354862|gb|EGA86695.1| Ski6p [Saccharomyces cerevisiae VL3]
gi|349578400|dbj|GAA23566.1| K7_Ski6p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765457|gb|EHN06965.1| Ski6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299448|gb|EIW10542.1| Ski6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 246
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 15/126 (11%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
LR D R +++ R F + ++N+ A GS+Y E GN K+I V GP+E + K+ M ++
Sbjct: 12 LRLDGRRWNELRR--FES-SINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTS 68
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHKDFSSMLH------KALEGAIILETFPKTTVDVFAL 145
LN +V+ T F+ R + S HK+ +L + E ++L +P+T +D+
Sbjct: 69 KALLNVSVNITKFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 127
Query: 146 VLESGG 151
VLE G
Sbjct: 128 VLEQDG 133
>gi|336471367|gb|EGO59528.1| hypothetical protein NEUTE1DRAFT_79727 [Neurospora tetrasperma FGSC
2508]
gi|350292464|gb|EGZ73659.1| hypothetical protein NEUTE2DRAFT_108469 [Neurospora tetrasperma
FGSC 2509]
Length = 286
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 70/147 (47%), Gaps = 22/147 (14%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFH--QCRPA------FFRTGAVNSASGSAYAEF--- 68
P T PPI+ D S G + RPA + +TG SASGSAY E
Sbjct: 10 PVGTTNPPIYD----DAPEKQSEGVKVTRSRPANVIRKMYLKTGVTPSASGSAYLEIESS 65
Query: 69 GN----TKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIR-GQGSD--HKDFSSM 121
GN K+ SV GPR ++ +S L+ +V + FAT R G D +D +
Sbjct: 66 GNGGSGLKLSCSVHGPRALPRSTPFSPHIILSTHVKFAPFATKQRRGYIRDPIERDLGTH 125
Query: 122 LHKALEGAIILETFPKTTVDVFALVLE 148
L AL G+II + +PK+ VD+ ++E
Sbjct: 126 LETALRGSIIADRWPKSGVDIIISIVE 152
>gi|190406796|gb|EDV10063.1| exosome complex exonuclease RRP41 [Saccharomyces cerevisiae
RM11-1a]
Length = 246
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 15/126 (11%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
LR D R +++ R F + ++N+ A GS+Y E GN K+I V GP+E + K+ M ++
Sbjct: 12 LRLDGRRWNELRR--FES-SINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTS 68
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFAL 145
LN +V+ T F+ R + S HK + + L + E ++L +P+T +D+
Sbjct: 69 KALLNVSVNITKFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 127
Query: 146 VLESGG 151
VLE G
Sbjct: 128 VLEQDG 133
>gi|413948423|gb|AFW81072.1| hypothetical protein ZEAMMB73_833729 [Zea mays]
Length = 236
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGRL 95
R D R ++ R G V A GSA E GNT+VI +V+GPRE +K + S +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEALV 70
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
C F+T R + D + + S ++ + +E +I+ P + +D++ VL S
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVLRS 128
>gi|296413553|ref|XP_002836475.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630299|emb|CAZ80666.1| unnamed protein product [Tuber melanosporum]
Length = 336
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 20 PTRKTRPPIF--SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGN------- 70
P T PP+F S + ++ R R F +TG A+GSA+ E
Sbjct: 10 PLEGTIPPVFLTSSTHKSIIK---RSPTTLRKIFLKTGLTPPATGSAFLELPTPSTHSTP 66
Query: 71 -TKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQG----SDHKDFSSMLHKA 125
K+ SV+GPR + +S+ RL + ++ F+TP R +G +D S+ L A
Sbjct: 67 TLKLTSSVYGPRPLPSSTTFSSNARLTAELKFSPFSTPGRRRGYIRDGVERDLSAQLSIA 126
Query: 126 LEGAIILETFPKTTVDVFALVLESGG 151
L ++ + +PK+ +DVF VL+ G
Sbjct: 127 LGKSVAVGKYPKSAIDVFVSVLDCEG 152
>gi|401625567|gb|EJS43567.1| ski6p [Saccharomyces arboricola H-6]
Length = 246
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 15/126 (11%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
LR D R +++ R F + ++N+ A GS+Y E GN K+I V GP+E + K+ M ++
Sbjct: 12 LRLDGRRWNELRR--FES-SINTHPHAADGSSYLEQGNNKIITLVKGPKEPRLKSQMDTS 68
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFAL 145
LN +V+ T F+ R + S HK + + L + E ++L +P+T +D+
Sbjct: 69 KALLNVSVNITRFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 127
Query: 146 VLESGG 151
VLE G
Sbjct: 128 VLEQDG 133
>gi|301097298|ref|XP_002897744.1| exosome complex exonuclease RRP41-like protein [Phytophthora
infestans T30-4]
gi|262106765|gb|EEY64817.1| exosome complex exonuclease RRP41-like protein [Phytophthora
infestans T30-4]
Length = 777
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 24/142 (16%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NI 92
V LR D R + R R G + GS+Y E GNTKV+ V+GPRE + A S N
Sbjct: 22 VAGLRVDGRRSEEVRRIRTRFGLFSRVDGSSYYEQGNTKVVAVVYGPRELRTAAAGSVNS 81
Query: 93 G-------------------RLNCNVSYTTFAT----PIRGQGSDHKDFSSMLHKALEGA 129
G +NC + FAT P R + S + + E
Sbjct: 82 GAAAVGTGSGNAASNTQPRATVNCEFTQAAFATSERKPQRSGDRKKLEMSLAVKQIFEAC 141
Query: 130 IILETFPKTTVDVFALVLESGG 151
I + +P++ +D+F VL + G
Sbjct: 142 IQTQLYPRSQIDIFVQVLHADG 163
>gi|448262634|pdb|4IFD|B Chain B, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 248
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 15/126 (11%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
LR D R +++ R F + ++N+ A GS+Y E GN K+I V GP+E + K+ M ++
Sbjct: 14 LRLDGRRWNELRR--FES-SINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTS 70
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFAL 145
LN +V+ T F+ R + S HK + + L + E ++L +P+T +D+
Sbjct: 71 KALLNVSVNITKFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 129
Query: 146 VLESGG 151
VLE G
Sbjct: 130 VLEQDG 135
>gi|313217648|emb|CBY38696.1| unnamed protein product [Oikopleura dioica]
gi|313233490|emb|CBY09662.1| unnamed protein product [Oikopleura dioica]
Length = 224
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 51 FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG 110
+ + +A+GS+Y E+ KV+V+ GP++ K +S G L +SY FA+
Sbjct: 35 LLNSSVIKNANGSSYVEYNGAKVMVACIGPKDLAKREDFSLSGLLKIELSYCAFASRASR 94
Query: 111 QG-----SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ + K+ + ++ +AL+ I+L+ +PK+ +D+ V+ G
Sbjct: 95 RAPSKTTEEEKEQAQIIEEALKSVILLKRYPKSQIDMRVQVICEG 139
>gi|326471461|gb|EGD95470.1| 3' exoribonuclease [Trichophyton tonsurans CBS 112818]
gi|326481764|gb|EGE05774.1| 3' exoribonuclease [Trichophyton equinum CBS 127.97]
Length = 334
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 25/154 (16%)
Query: 20 PTRKTRPPIF----SGSD--VDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF---- 68
P TR P+F G D + RP +R + R + +TG + SASGSAY E
Sbjct: 10 PAAATRAPVFVSCAEGKDKPAAFKRPTRTRDARELRKIYLKTGVIPSASGSAYFELHPSN 69
Query: 69 -----------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSD 114
+ K+I SV GP+ ++ +S L+ +V + FA R + +
Sbjct: 70 SSHGGSLIPPSSSLKLICSVNGPKPLSRSTPFSPNLLLSAHVKFAPFAGRRRRAHVRDMN 129
Query: 115 HKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+D L AL GAII + +PK+ +D+ ++LE
Sbjct: 130 ERDLGVHLENALRGAIIGDRWPKSGLDITIMILE 163
>gi|351713983|gb|EHB16902.1| Exosome complex exonuclease RRP41 [Heterocephalus glaber]
Length = 256
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-------------K 84
R D R + R R G A GSAY E GNTK + V+GP E+
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASLVYLSFLFQIRGS 72
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
++ + +NC S TF+T R + D K + L + E AI+ + P++ +
Sbjct: 73 RSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 132
Query: 141 DVFALVLESGG 151
D++ VL++ G
Sbjct: 133 DIYVQVLQADG 143
>gi|212535542|ref|XP_002147927.1| 3' exoribonuclease family protein [Talaromyces marneffei ATCC
18224]
gi|210070326|gb|EEA24416.1| 3' exoribonuclease family protein [Talaromyces marneffei ATCC
18224]
Length = 333
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 20/124 (16%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFG------NT-----------KVIVSVFGPRESKKAMM 88
+ R F +TG + SASGS+Y E NT K+ +V GPR ++
Sbjct: 42 ELRKIFLKTGLIPSASGSSYLEIEPARRPTNTPKSLIAPATSLKIACAVHGPRPLPRSAN 101
Query: 89 YSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
YS L +V Y FA R + + +D L A+ GAII E +PK+ +DV
Sbjct: 102 YSPNLLLTTHVKYAPFAHRRRKGHIRDASERDLGVHLETAIRGAIIAERWPKSALDVTIT 161
Query: 146 VLES 149
VLE+
Sbjct: 162 VLEA 165
>gi|451856501|gb|EMD69792.1| hypothetical protein COCSADRAFT_78204 [Cochliobolus sativus ND90Pr]
Length = 327
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 24/153 (15%)
Query: 20 PTRKTRPPIFSGSD-----VDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF----- 68
P+ T P+F+ + V+ LRP SRG ++ R F +T + SASGSAY E
Sbjct: 13 PSGGTSAPVFARTIREPQYVEKLRPTRSRGPNELRRIFLQTSIIPSASGSAYLEIPSSSV 72
Query: 69 ----------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDH 115
+ K+ S+ GP+ ++ +S L V + FAT R + +
Sbjct: 73 ANSSSLIAPTSSLKITASIQGPKPLPRSAPFSPSLLLTTTVKFAPFATRHRRGYLRDATE 132
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+D L AL G II E +PK+ V+V +LE
Sbjct: 133 RDLGVHLETALRGVIIGERWPKSGVEVVVTILE 165
>gi|260941676|ref|XP_002615004.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
gi|238851427|gb|EEQ40891.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
Length = 244
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGA-VNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R + NSA GS+Y E GNTKV+ V GP+E S ++ N
Sbjct: 12 LRVDGRRWNELRRFECKINTHANSADGSSYIEQGNTKVMCMVHGPKEPSLRSQSNQNRAT 71
Query: 95 LNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ N++ +F+T R + + + + + L + E +I+ +P+T ++V VL
Sbjct: 72 IEINLNVASFSTLERKKRNRTEKRMVELKTTLERTFEQSILAHLYPRTLIEVHVQVLAQD 131
Query: 151 G 151
G
Sbjct: 132 G 132
>gi|320591764|gb|EFX04203.1| 3 exoribonuclease family protein [Grosmannia clavigera kw1407]
Length = 317
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 52 FRTGAVNSASGSAYAEFGN--------TKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTT 103
+TG SASGSAY E + K+ +V GPR ++M +S L+ +V Y
Sbjct: 68 LQTGVTPSASGSAYLELSSGAVAGTSGLKLSCTVHGPRALPRSMPFSPHLILSTHVKYAP 127
Query: 104 FATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
FAT R + + +D + L +L GAI+ E +PK+ VD+ V+E+
Sbjct: 128 FATKERRGYLRDTSERDLAVHLETSLRGAILGERWPKSGVDIVVSVIEA 176
>gi|422295380|gb|EKU22679.1| exosome complex component RRP46, partial [Nannochloropsis gaditana
CCMP526]
Length = 244
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFG---PRESKKAMMYSNIGR 94
RPD R +Q RP G +N A GSA G T V+ +V+G PR S+K +
Sbjct: 27 RPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVE 86
Query: 95 LNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + Y AT S K+ + LE AI LE FP+T + V V E G
Sbjct: 87 VTVHPHY-GLAT------SSEKEKEGAVKALLEAAICLERFPRTVIHVICQVYEDNG 136
>gi|336265878|ref|XP_003347709.1| hypothetical protein SMAC_03807 [Sordaria macrospora k-hell]
gi|380091243|emb|CCC11100.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 286
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 10/118 (8%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEF---GN----TKVIVSVFGPRESKKAMMYSNIG 93
SR + R + +TG SASGSAY E GN K+ SV GPR ++ +S
Sbjct: 35 SRPANVIRKMYLKTGVTPSASGSAYLEIESSGNGGSGLKLSCSVHGPRALPRSTPFSPHI 94
Query: 94 RLNCNVSYTTFATPIR-GQGSD--HKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L+ +V + FAT R G D +D + L AL G+II + +PK+ VD+ ++E
Sbjct: 95 ILSTHVKFAPFATKQRRGYIRDPIERDLGTHLEAALRGSIIADRWPKSGVDIIISIVE 152
>gi|71002504|ref|XP_755933.1| 3' exoribonuclease family protein [Aspergillus fumigatus Af293]
gi|66853571|gb|EAL93895.1| 3' exoribonuclease family protein [Aspergillus fumigatus Af293]
gi|159129990|gb|EDP55104.1| 3' exoribonuclease family protein [Aspergillus fumigatus A1163]
Length = 320
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 29/159 (18%)
Query: 20 PTRKTRPPIFSGS-----DVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF----- 68
P TRP +F+ S D RP R ++ R F +TG + SASGS+Y EF
Sbjct: 10 PPSGTRPAVFASSLKSTTDTTTGRPQRQRQPNELRKIFLKTGLIPSASGSSYLEFEPSAS 69
Query: 69 ---------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG--- 110
K+ +V GP+ ++ +S L +V Y FA R
Sbjct: 70 LAAARSSPQSLIPPSSALKLACTVHGPKPLPRSATFSPNLVLTTHVKYAPFAARRRKGHI 129
Query: 111 QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ + +D L AL G I+ E +PK+ +D+ +LE+
Sbjct: 130 RDTSERDLGVHLETALRGVIVAERWPKSGLDITITILEA 168
>gi|168063069|ref|XP_001783497.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664987|gb|EDQ51687.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 246
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R G V SA GSA GNT+V+ V+GP E KA +
Sbjct: 9 EGLRLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVVYGPHEVHNKAHQLHDKA 68
Query: 94 RLNCNVSYTTFAT----PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T + S ++ + LE AI+ P++ +D++ VL++
Sbjct: 69 LVRCEYSMAAFSTGERRRRGKTDRRATELSLVIGQTLEAAIMTHLLPRSQIDIYVQVLQA 128
Query: 150 GG 151
G
Sbjct: 129 DG 130
>gi|374325948|ref|YP_005084148.1| exosome complex exonuclease Rrp41 [Pyrobaculum sp. 1860]
gi|356641217|gb|AET31896.1| exosome complex exonuclease Rrp41 [Pyrobaculum sp. 1860]
Length = 224
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 47 CRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFA 105
R G V++A GSA +G T + +V+GPRE + + + G + F+
Sbjct: 1 MREVKISVGVVSNADGSAMVSYGTTTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFS 60
Query: 106 TPIRGQG----SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
T + + S +L +ALE AI+LE +P++ +DVF +L++ G
Sbjct: 61 TKDERKSPTPSRREIEISKVLREALEPAIMLEQYPRSRIDVFVEILQADG 110
>gi|50552404|ref|XP_503612.1| YALI0E06039p [Yarrowia lipolytica]
gi|49649481|emb|CAG79193.1| YALI0E06039p [Yarrowia lipolytica CLIB122]
Length = 262
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 20/119 (16%)
Query: 51 FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN--------CN---- 98
F +TG V +A+GSAY E + K++ V GPR + S I ++ C+
Sbjct: 37 FVKTGVVENANGSAYLELDDIKIVAIVHGPRPMRGLFTTSAILNVDTKFLPVSLCDIESK 96
Query: 99 ---VSYTTFATPIRG-----QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
VS T IR S K+ SS +H +L +I++E +PK+T+DV VL S
Sbjct: 97 SAVVSSTQLTQYIRSASTTQSSSLQKNVSSYVHTSLLPSILVEKYPKSTIDVSISVLSS 155
>gi|451856157|gb|EMD69448.1| hypothetical protein COCSADRAFT_32167 [Cochliobolus sativus ND90Pr]
Length = 252
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP-----RESKKAMMYS 90
LR D R +++ R + +A GS+Y E GNTKV+VSV GP + ++
Sbjct: 12 LLRLDGRRWNELRHIHAQISTQAAADGSSYLEMGNTKVLVSVSGPAAEGKQTGQRGTTSD 71
Query: 91 NIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLH---KALEGAIILETFPKTTVDVFALVL 147
+ +++ +++ F+ R + K S M H A EG + L +P++T+ + ++
Sbjct: 72 KLAKIDVEINFAGFSGVDRRKRKTDKKTSEMEHCLRSAFEGVVSLHLYPRSTITINVHIV 131
Query: 148 ESGG 151
G
Sbjct: 132 SQDG 135
>gi|435852006|ref|YP_007313592.1| archaeal exosome-like complex exonuclease 1 [Methanomethylovorans
hollandica DSM 15978]
gi|433662636|gb|AGB50062.1| archaeal exosome-like complex exonuclease 1 [Methanomethylovorans
hollandica DSM 15978]
Length = 327
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMY--- 89
D + LR D R + RP G ++ A GS Y E+G K++ +V+GPRE M
Sbjct: 10 DENGLRLDGRAVDEMRPMTIEIGVLSRADGSCYLEWGKNKILAAVYGPRELHPRRMQKPD 69
Query: 90 SNIGRLNCNVSYTTFATPIR-GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
I R N++ + R G + S + A I+ + +P +DVFA VL+
Sbjct: 70 EAIVRYRYNMAAFSVEDRARPGPSRRSIEISKVSRDAFAPIIMTKYYPSAVIDVFAEVLQ 129
Query: 149 S 149
+
Sbjct: 130 A 130
>gi|409043264|gb|EKM52747.1| hypothetical protein PHACADRAFT_31210 [Phanerochaete carnosa
HHB-10118-sp]
Length = 266
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D R + R +A GSA G T+V+VSVFGPRE+K ++ + +
Sbjct: 11 DGYRSDGRRQFELRDITMDLSQRGTADGSAMITHGLTQVLVSVFGPREAKMRSQTFHDRA 70
Query: 94 RLNCNVSYTTFATPIRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
LN V+ F+T R + + D + +F+S + E + +P++ +D++ VL+
Sbjct: 71 VLNVEVNIAPFSTGERRKRNRGDKRILEFASAIKSTFEPVVQTNLYPRSQIDIYVHVLQQ 130
Query: 150 GG 151
G
Sbjct: 131 DG 132
>gi|266618485|pdb|2WP8|B Chain B, Yeast Rrp44 Nuclease
Length = 246
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 15/126 (11%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
LR D R +++ R F + ++N+ A GS+Y E GN K+I V GP+E + K+ M ++
Sbjct: 12 LRLDGRRWNELRR--FES-SINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTS 68
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHKDFSSMLH------KALEGAIILETFPKTTVDVFAL 145
LN +V+ F+ R + S HK+ +L + E ++L +P+T +D+
Sbjct: 69 KALLNVSVNINKFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 127
Query: 146 VLESGG 151
VLE G
Sbjct: 128 VLEQDG 133
>gi|410079801|ref|XP_003957481.1| hypothetical protein KAFR_0E01920 [Kazachstania africana CBS 2517]
gi|372464067|emb|CCF58346.1| hypothetical protein KAFR_0E01920 [Kazachstania africana CBS 2517]
Length = 246
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 37 LRPDSRGFHQCRP--AFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
LR D R +++ R A T A + + GS+Y E GN K+ V GPRE S+++ + +
Sbjct: 12 LRLDGRRWNELRKFDASINTHA-HLSDGSSYLEQGNNKIFTLVKGPREPSQRSQLDQSKA 70
Query: 94 RLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
LN V+ T F+ R + S HK + + L + E ++L+ +P+T +D+ VL
Sbjct: 71 TLNVTVNITRFSKFERSKAS-HKNERRTLEIQTSLVRTFEKNLMLQNYPRTVIDIEIHVL 129
Query: 148 ESGG 151
+ G
Sbjct: 130 QQDG 133
>gi|452003219|gb|EMD95676.1| hypothetical protein COCHEDRAFT_1019334 [Cochliobolus
heterostrophus C5]
Length = 254
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP-RESKK------AMM 88
LR D R +++ R + +A GS+Y E GNTKV+VSV GP ESK+ +
Sbjct: 12 LLRLDGRRWNELRHIHAQISTQAAADGSSYLEMGNTKVLVSVTGPAAESKQGGGQRGGIS 71
Query: 89 YSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLH---KALEGAIILETFPKTTVDVFAL 145
+ +++ +++ F+ R + K + M H A EG + L +P++T+ +
Sbjct: 72 NDKLAKIDVEINFAGFSGVDRRKRKTDKKTNEMEHCLRSAFEGVLSLHLYPRSTITIHVH 131
Query: 146 VLESGG 151
V+ G
Sbjct: 132 VVSQDG 137
>gi|336477103|ref|YP_004616244.1| exosome complex exonuclease 1 [Methanosalsum zhilinae DSM 4017]
gi|335930484|gb|AEH61025.1| exosome complex exonuclease 1 [Methanosalsum zhilinae DSM 4017]
Length = 299
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKKAMMY 89
D + LR D R + RP G ++ A GS Y E+G KV+ +V+GPR +K +
Sbjct: 10 DDNGLRLDGRRVDEIRPMKIDIGVLSRADGSCYLEWGKNKVLAAVYGPRTLHPRRKQIPD 69
Query: 90 SNIGRLNCNVSYTTFATPIR-GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ + R N++ + IR G + S + +A E ++ + +P T +D+F +++
Sbjct: 70 AALIRYRYNMASFSVEDRIRPGPSRRSVEISKVSAEAFEPVVLTKFYPNTVIDIFTEIIQ 129
Query: 149 S 149
+
Sbjct: 130 A 130
>gi|119482067|ref|XP_001261062.1| 3' exoribonuclease family protein [Neosartorya fischeri NRRL 181]
gi|119409216|gb|EAW19165.1| 3' exoribonuclease family protein [Neosartorya fischeri NRRL 181]
Length = 320
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 29/159 (18%)
Query: 20 PTRKTRPPIFSGS-----DVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF----- 68
P TRP +F+ S D RP R ++ R F +TG + SASGS+Y EF
Sbjct: 10 PPSGTRPVVFASSLKSTTDTASGRPQRQRQPNELRKIFLKTGLIPSASGSSYLEFEPSAS 69
Query: 69 ---------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG--- 110
K+ +V GP+ ++ +S L +V Y FA R
Sbjct: 70 LAAARSSPQSLIPPSSALKLACTVHGPKPLPRSATFSPNLVLTTHVKYAPFAARRRKGHI 129
Query: 111 QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ + +D L AL G I+ E +PK+ +D+ +LE+
Sbjct: 130 RDTSERDLGVHLETALRGVIVAERWPKSGLDITITILEA 168
>gi|255953039|ref|XP_002567272.1| Pc21g02070 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588983|emb|CAP95104.1| Pc21g02070 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 315
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 28/158 (17%)
Query: 20 PTRKTRPPIF-----SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF------ 68
P TRPP+F S +D+ R + R F + G + +ASGS+Y EF
Sbjct: 10 PPGGTRPPVFASLQESSTDIANRAQRQRQPTELRKIFLKAGLIPTASGSSYLEFEPSASL 69
Query: 69 --------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---Q 111
K+ +V GP+ ++ +S L +V Y FA R +
Sbjct: 70 AAARSNPKSLIPPSSALKLACTVHGPKPLPRSAAFSPNLVLTTHVKYAPFAARKRKGHIR 129
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ +D L AL GAII E +PK+ +D+ ++E+
Sbjct: 130 DASERDLGVHLETALRGAIIAERWPKSGLDITLTIIEA 167
>gi|452211130|ref|YP_007491244.1| Ribonuclease PH [Methanosarcina mazei Tuc01]
gi|452101032|gb|AGF97972.1| Ribonuclease PH [Methanosarcina mazei Tuc01]
Length = 465
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 55 GAVNSASGSAYAEFGNTKVIVSVFGPRES---KKAMMYSNIGRLNCNVSYTTFATPIR-G 110
G ++ A GS Y E+G K++V VFGPRE+ + S + R N++ + R G
Sbjct: 6 GVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVIRYRYNMASFSVEDRARPG 65
Query: 111 QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ S + +A E I+ E FPKT +D+F VL++
Sbjct: 66 PSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQA 104
>gi|428164846|gb|EKX33858.1| hypothetical protein GUITHDRAFT_49759, partial [Guillardia theta
CCMP2712]
Length = 232
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
R V+ ASGSAY E G TKV+ +V GP+ + ++S GR++C V+ + F+
Sbjct: 15 RRKHMSVDVVDRASGSAYVESGRTKVVCTVHGPKTDTWSSLFSEHGRISCFVTISAFS-- 72
Query: 108 IRGQGSDHKDFSSM-----------LHKALEGAIILETFPKTTVDVFALVLESGG 151
GSD + + AL+ AI L +PK+ ++V V+E+ G
Sbjct: 73 ----GSDGERREERREEEERAAELGILPALQSAINLLKYPKSVIEVHVSVVEADG 123
>gi|363756298|ref|XP_003648365.1| hypothetical protein Ecym_8266 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891565|gb|AET41548.1| Hypothetical protein Ecym_8266 [Eremothecium cymbalariae
DBVPG#7215]
Length = 246
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
+R D R +++ R + N+A GS+Y E GN K+I V GP+E + ++ + SN G
Sbjct: 12 IRIDGRRWNELRRFDYSINTHPNAADGSSYLEQGNNKIITLVKGPQEPNLRSQVNSNKGT 71
Query: 95 LNCNVSYTTFATPIRGQGSDHK-----DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
L V+ T F+ R Q + + L + E I+L+ + +T +D+ V++
Sbjct: 72 LTVTVNITKFSDIERSQAGHRNERRTLELQTALVRTFEKNIMLQLYSRTVIDIQIHVIQK 131
Query: 150 GG 151
G
Sbjct: 132 DG 133
>gi|412985799|emb|CCO16999.1| predicted protein [Bathycoccus prasinos]
Length = 262
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 51 FFRTGAVNSASGSAYAEFGN----TKVIVSVFGPRESKKAMMYSNI----GRLNCNVSYT 102
F + ++SGSA+ + G+ TK+ VSVFGP+++ + G L+ +V+
Sbjct: 27 FLSLNPITNSSGSAFIQLGDGRTTTKIFVSVFGPKKTTSRAQDERVSKLRGTLDVSVTLA 86
Query: 103 TFA-----TPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+FA + R D + L K L G ++LE+FPK V+V + ++ G
Sbjct: 87 SFAFKSLESSSRNIKDVEMDLTEKLTKCLRGVVVLESFPKAVVEVRCAIADANG 140
>gi|396465582|ref|XP_003837399.1| similar to 3' exoribonuclease family protein [Leptosphaeria
maculans JN3]
gi|312213957|emb|CBX93959.1| similar to 3' exoribonuclease family protein [Leptosphaeria
maculans JN3]
Length = 325
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 24/153 (15%)
Query: 20 PTRKTRPPIFSGSDVD-----WLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF----- 68
P+ T P+F+ + D LRP SRG ++ R F +T + SASGSAY E
Sbjct: 11 PSGGTSAPVFAQTIRDPEYLQKLRPTRSRGPNELRRIFLQTAIIPSASGSAYLEIPSSSP 70
Query: 69 ----------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDH 115
+ K+ S+ GP+ ++ +S L V + F T R + +
Sbjct: 71 SSKSTLISPTSSLKITASIQGPKPLPRSAAFSPSLLLTTTVKFAPFGTRQRRGYIRDAAE 130
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+D L AL G II E +PK+ V+V +LE
Sbjct: 131 RDLGVHLETALRGVIIGERWPKSGVEVVITILE 163
>gi|424811892|ref|ZP_18237132.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756114|gb|EGQ39697.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus
Nanosalinarum sp. J07AB56]
Length = 237
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D D R D R + R + +A GSA E GNT+V+ SVFGP+E K + +
Sbjct: 10 DEDGNRLDGRKRDELRETSMEVDVLENAEGSARVETGNTRVVASVFGPQELHPKHLQEPD 69
Query: 92 IGRLNCNVSYTTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ + F+ R G K+ + KAL A+ L FP +D+ ++E
Sbjct: 70 RAVIKMRYNMAPFSVDDRMRPGPNRRAKEIGLVSKKALAPAVDLHEFPNAGIDISMEIIE 129
Query: 149 SGG 151
S G
Sbjct: 130 SDG 132
>gi|255720833|ref|XP_002545351.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
gi|240135840|gb|EER35393.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
Length = 240
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGR 94
LR D R +++ R R NS+ GS+Y E GNTKV+ +V GP E + ++ +S
Sbjct: 9 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVVCTVQGPIEPQLRSQQHSEHAN 68
Query: 95 LNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ N++ FAT R + + ++ + ++L K +I++ +P+T + + VL
Sbjct: 69 IEINLTIANFATFERKKRNKNEKRLIELKNILEKTFMESIMINLYPRTNIIINIQVLSQD 128
Query: 151 G 151
G
Sbjct: 129 G 129
>gi|448097303|ref|XP_004198638.1| Piso0_002021 [Millerozyma farinosa CBS 7064]
gi|359380060|emb|CCE82301.1| Piso0_002021 [Millerozyma farinosa CBS 7064]
Length = 278
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCN-VSYT-- 102
+ R F +TG V++ASGS+Y E N V VSVFGPR + + + C + Y
Sbjct: 39 EVRKVFIKTGLVSNASGSSYIEASNIIVEVSVFGPRPIRGSFTDRASFSVECKFLPYLKQ 98
Query: 103 ---------TFATPIRGQG---SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
T A QG +HK S + A IILE +PK+T+DVF V+ +G
Sbjct: 99 PQEDLFRGDTHANNNGRQGLTEVEHK-ISQYVETAFLPCIILEKYPKSTIDVFITVISTG 157
Query: 151 G 151
Sbjct: 158 N 158
>gi|384251192|gb|EIE24670.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 245
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
+ LR D R + R + G + A GSA E GNTKVI + +GP+ + ++ N
Sbjct: 7 EGLRLDGRRPKELRALRCQLGPLPQADGSALFEMGNTKVIATAYGPKVADNRSQALHNRA 66
Query: 94 RLNCNVSYTTFATPIRGQGSDHK-----DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ C+ + F+T R Q + +S + ALE I+L+ FP+ + V VL+
Sbjct: 67 IVKCDYAEAAFSTGNRRQRRGRGDRKTTELASTIRSALEHTILLDLFPRAQIGVSVQVLQ 126
Query: 149 SGG 151
+ G
Sbjct: 127 ADG 129
>gi|47220383|emb|CAF98482.1| unnamed protein product [Tetraodon nigroviridis]
Length = 291
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE----------SKKAM 87
R D R + R R G A GSAY E GNTK + V+GP E
Sbjct: 13 RIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKALAVVYGPHEVCVCVCVCVCVCVCQ 72
Query: 88 MYSNIGR-------LNCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFP 136
M + R +NC S TF+T R + D K + S L + E A++ + FP
Sbjct: 73 MRGSRSRARHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVMTQLFP 132
Query: 137 KTTVDVFALV 146
++ +D++ V
Sbjct: 133 RSQIDIYVKV 142
>gi|189205667|ref|XP_001939168.1| 3' exoribonuclease family protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975261|gb|EDU41887.1| 3' exoribonuclease family protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 327
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 24/153 (15%)
Query: 20 PTRKTRPPIFSGSD-----VDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF----- 68
P+ T P+F+ + ++ LRP SR ++ R F +T + SASGSAY E
Sbjct: 13 PSGGTSAPVFARTIRDPQYIEKLRPTRSRDPNELRRIFLQTSIIPSASGSAYLEIPSSSP 72
Query: 69 ----------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDH 115
+ K+ S+ GP+ ++ +S L V + FAT R + S
Sbjct: 73 SATSSLIPPTSSLKITASIQGPKPLPRSAPFSPSLLLTTTVKFAPFATRHRRGYIRDSTE 132
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+D L AL G II E +PK+ V+V +LE
Sbjct: 133 RDLGVHLETALRGVIIGERWPKSGVEVVVTILE 165
>gi|406864379|gb|EKD17424.1| 3' exoribonuclease family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 324
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 55/122 (45%), Gaps = 21/122 (17%)
Query: 48 RPAFFRTGAVNSASGSAYAEF------------------GNTKVIVSVFGPRESKKAMMY 89
R F +TG SASGSAY E K+ +V GPR K+ +
Sbjct: 44 RKMFLKTGVTPSASGSAYLELEASRAANSRAPGLASLSTSGLKLTCTVHGPRPLPKSAPF 103
Query: 90 SNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
S L+ +V Y FAT R + S +D S L AL G II + +PK+ V+V +
Sbjct: 104 SPHIILSTHVKYAPFATRKRRGYLRDSSERDLSVHLETALRGVIIGDRWPKSGVEVIITI 163
Query: 147 LE 148
LE
Sbjct: 164 LE 165
>gi|146414660|ref|XP_001483300.1| hypothetical protein PGUG_04029 [Meyerozyma guilliermondii ATCC
6260]
gi|146391773|gb|EDK39931.1| hypothetical protein PGUG_04029 [Meyerozyma guilliermondii ATCC
6260]
Length = 252
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 51 FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIR- 109
F +TG V++ASGSAY E + V VSV+GPR + + + + C + + T +
Sbjct: 43 FLKTGLVDTASGSAYVEADDCIVQVSVYGPRPIRGSFIEKASFSVEC--KFLPYVTKVAA 100
Query: 110 -----------GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
G S + S+ + AL ++LE +PK+T+D++ V+
Sbjct: 101 EHQNTNPNGKPGMNSIEQRISTYVETALLPCLLLENYPKSTIDIYVTVI 149
>gi|392577921|gb|EIW71049.1| hypothetical protein TREMEDRAFT_27507 [Tremella mesenterica DSM
1558]
Length = 263
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 27 PIFSGSDV---DWLRPDSRGFH--QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR 81
P F S + + L GFH +P F+ G ++ A+GS Y E G K+ SV+GPR
Sbjct: 18 PTFESSSIIVDNGLGTGDDGFHVGSSQP-VFKAGLIDQANGSGYVEIGGVKIACSVYGPR 76
Query: 82 ESKKAMMYSNIGRLNCNVSYTTFAT-PIRGQGSDHKDF--SSMLHKALEGAIILETFPKT 138
K YS G LN + + FA+ P R D + S++L++ L + L PK+
Sbjct: 77 --PKQPPYSPEGTLNLEIKFAPFASHPRRAPLRDTEPIPLSTLLYRLLLPCLQLHLLPKS 134
Query: 139 TVDVFALVLES 149
++DVF L+LES
Sbjct: 135 SIDVFLLILES 145
>gi|241954284|ref|XP_002419863.1| 3'-to-5' phosphorolytic exoribonuclease, putative; exosome complex
exonuclease, putative; ribosomal RNA processing protein,
putative [Candida dubliniensis CD36]
gi|223643204|emb|CAX42078.1| 3'-to-5' phosphorolytic exoribonuclease, putative [Candida
dubliniensis CD36]
Length = 240
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R NS+ GS+Y E GNTKV+ +V GP E + ++ +S
Sbjct: 9 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPTLRSQQHSERAN 68
Query: 95 LNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVL-ES 149
+ N++ +F+T R + S ++ + + L K E ++++ +P+T + + VL +
Sbjct: 69 IEVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVLCQD 128
Query: 150 GG 151
GG
Sbjct: 129 GG 130
>gi|396460216|ref|XP_003834720.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
maculans JN3]
gi|312211270|emb|CBX91355.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
maculans JN3]
Length = 280
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK---KAMMYSNIG 93
LR D R +++ R + +A GS+Y E GNTK++VSV GP E + + + G
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGRQSGQRGGQNGQG 72
Query: 94 RLNCNVSYTTFATPIRGQGSDHKDFSSMLH---KALEGAIILETFPKTTVDVFALVLESG 150
++ +++ F+ R + K S M H A EG ++L +P +T+ + ++
Sbjct: 73 KVEVEINFAGFSGVDRRKRKSDKRTSEMEHCLRSAFEGVLLLHLYPHSTITLNIHIISQD 132
Query: 151 G 151
G
Sbjct: 133 G 133
>gi|238881631|gb|EEQ45269.1| exosome complex exonuclease RRP41 [Candida albicans WO-1]
Length = 240
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R NS+ GS+Y E GNTKV+ +V GP E + ++ +S
Sbjct: 9 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERAN 68
Query: 95 LNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVL-ES 149
+ N++ +F+T R + S ++ + + L K E ++++ +P+T + + VL +
Sbjct: 69 IEVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVLCQD 128
Query: 150 GG 151
GG
Sbjct: 129 GG 130
>gi|68466049|ref|XP_722799.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|68466344|ref|XP_722654.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|46444644|gb|EAL03917.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|46444799|gb|EAL04071.1| likely exosome component Ski6p [Candida albicans SC5314]
Length = 240
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R NS+ GS+Y E GNTKV+ +V GP E + ++ +S
Sbjct: 9 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERAN 68
Query: 95 LNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVL-ES 149
+ N++ +F+T R + S ++ + + L K E ++++ +P+T + + VL +
Sbjct: 69 IEVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVLCQD 128
Query: 150 GG 151
GG
Sbjct: 129 GG 130
>gi|254168384|ref|ZP_04875229.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|197622665|gb|EDY35235.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 208
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 60 ASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK- 116
A GSA+ E+G K+I +V+GP E+ K + ++ + S F+ R + G D +
Sbjct: 1 ADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIVRARYSMAPFSVDERKRPGPDRRA 60
Query: 117 -DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ S ++ +ALE I +E +P+T++DV+ VL++
Sbjct: 61 IELSKVISEALESVIFVEKYPRTSIDVYIEVLQA 94
>gi|258596889|ref|XP_001349602.2| 3' exoribonuclease, putative [Plasmodium falciparum 3D7]
gi|254688464|gb|AAC71872.3| 3' exoribonuclease, putative [Plasmodium falciparum 3D7]
Length = 275
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R ++R ++ R F + G + S + GNTK++ +V+GP K YS G++
Sbjct: 32 RINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTTVYGPNPDSKYATYSK-GKVFL 90
Query: 98 NVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+V T D S+L + + I+LE +P+ ++ + L+++ G
Sbjct: 91 DVKSLNINTIGASDRQRDDDIKSLLIECISNIILLEKYPQCSIKIKCLIIQDDG 144
>gi|189208598|ref|XP_001940632.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976725|gb|EDU43351.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 250
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI---G 93
LR D R +++ R + +A GS+Y E GNTK++VSV GP E +++
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQA 72
Query: 94 RLNCNVSYTTFATPIRGQGSDHKDFSSMLH---KALEGAIILETFPKTTV 140
++ +++ F+ R + K S M H A EG ++L +P +T+
Sbjct: 73 KVEVEINFAGFSGVERRKRKSDKRTSEMEHCIRSAFEGVLLLHLYPHSTI 122
>gi|50307027|ref|XP_453491.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642625|emb|CAH00587.1| KLLA0D09625p [Kluyveromyces lactis]
Length = 245
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R N+A GS+Y E GN K+I V GP+E S ++ + +
Sbjct: 12 LRVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQEPSSRSQVNTKQAT 71
Query: 95 LNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVD--VFALV 146
L+ ++ T FA R + S HK ++ + L + E ++L +P+T++D V AL
Sbjct: 72 LSVTINLTKFAKMERSKSS-HKNERRTLEWQASLVRTFEKNLMLHLYPRTSIDVQVHALQ 130
Query: 147 LESG 150
L+ G
Sbjct: 131 LDGG 134
>gi|356565547|ref|XP_003551001.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex exonuclease RRP46
homolog [Glycine max]
Length = 244
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R +Q RP + ++ A GSA G TKV+ +V+GP+ K
Sbjct: 5 RPDGRTPNQLRPLAYSCSILHRAHGSASWAQGETKVLAAVYGPKAGTKKNENPE------ 58
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S P GQ G K++ +L + LE I +P TT V V+ G
Sbjct: 59 KASIEVIWKPKTGQIGKMEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDG 113
>gi|443926567|gb|ELU45185.1| mRNA transport regulator 3 [Rhizoctonia solani AG-1 IA]
Length = 264
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 16/133 (12%)
Query: 27 PIFSGSDVDWLRPDSRGFH---QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES 83
PIF ++ D + SR + RP RTG S + +GPRE
Sbjct: 21 PIFENNEEDKIPTISRTTRKNDEIRPISKRTGQPTSKRKKPRL------LSQCRYGPREI 74
Query: 84 KKAMMYSNIGRLNCNVSYTTFAT-----PIRGQGSDHKDFSSMLHKALEGAIILETFPKT 138
K Y+ GRL V ++ F+ PIR ++ +S +H++L A+ LE FPK+
Sbjct: 75 KAGSTYTENGRLKVEVKFSPFSCKRRRAPIRD--AESPTLASQIHQSLLPAVRLELFPKS 132
Query: 139 TVDVFALVLESGG 151
+DV+ +LE G
Sbjct: 133 QLDVYVHILEVDG 145
>gi|307104174|gb|EFN52429.1| hypothetical protein CHLNCDRAFT_12102, partial [Chlorella
variabilis]
Length = 241
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR-ESKKAMMYSNIG 93
+ LR D R + R G ++SA GSA E GNT+V+ +VFGP+ +++
Sbjct: 6 ERLRLDGRRPKELRQLRAELGVLSSADGSALFEMGNTRVLAAVFGPKPVEQRSQEDERRA 65
Query: 94 RLNCNVSYTTFAT----PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C + +F+T + + +E I+ E P++ +D++ VL++
Sbjct: 66 IVKCEYAMASFSTGERRRRGKADRRATEIGMAIRNTMEQTILTELLPRSQIDIYVQVLQA 125
Query: 150 GG 151
G
Sbjct: 126 DG 127
>gi|150951278|ref|XP_001387575.2| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|149388461|gb|EAZ63552.2| 3'->5' exoribonuclease [Scheffersomyces stipitis CBS 6054]
Length = 241
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R NS+ GS+Y E GNTKVI V GP E + ++ SN
Sbjct: 9 LRIDGRRWNEIRNFECRINTHPNSSDGSSYIEQGNTKVICVVQGPMEPALRSQANSNEAT 68
Query: 95 LNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L N+S F+T R + S + + L + + +++ +P+T + + VL
Sbjct: 69 LEVNLSVANFSTTERKKRSKSEKRMVQLKTTLERTFQQSVMCNLYPRTLIRIDLHVLSQD 128
Query: 151 G 151
G
Sbjct: 129 G 129
>gi|313226557|emb|CBY21703.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
+ R D R + R R G + A GSA + GNTKV+ +VFGPR+ A + + +
Sbjct: 7 EGFRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQP-MASQHGAVSQ 65
Query: 95 LNC--NVSYT--TFATPIRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALV 146
C +V Y+ FA+ R + + D K + S L K E I+ +P++ + +F V
Sbjct: 66 EKCIVDVEYSRAAFASAERKRRARGDKKAQEISLSLKKTFEATILTTLYPRSAISIFVEV 125
Query: 147 LESGG 151
L++ G
Sbjct: 126 LQADG 130
>gi|313240640|emb|CBY32963.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
+ R D R + R R G + A GSA + GNTKV+ +VFGPR+ A + + +
Sbjct: 7 EGFRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQP-MASQHGAVSQ 65
Query: 95 LNC--NVSYT--TFATPIRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALV 146
C +V Y+ FA+ R + + D K + S L K E I+ +P++ + +F V
Sbjct: 66 EKCIVDVEYSRAAFASAERKRRARGDKKAQEISLSLKKTFEATILTTLYPRSAISIFVEV 125
Query: 147 LESGG 151
L++ G
Sbjct: 126 LQADG 130
>gi|238488533|ref|XP_002375504.1| 3' exoribonuclease family protein [Aspergillus flavus NRRL3357]
gi|220697892|gb|EED54232.1| 3' exoribonuclease family protein [Aspergillus flavus NRRL3357]
Length = 313
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 28/153 (18%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF----------- 68
P TRP +F+ S + RP +TG + SASGSAY E+
Sbjct: 10 PPSGTRPAVFASS-----LNSASDIATGRPQLLKTGLIPSASGSAYLEYEPSASLAAARS 64
Query: 69 ---------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHK 116
K+ +V GP+ ++ +S L ++ Y FA R + + +
Sbjct: 65 SPKSLIPPSSALKLACTVHGPKPLPRSATFSPNLVLTTHIKYAPFAARKRKGHIRDASER 124
Query: 117 DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
D L AL G I+ E +PK+ +D+ +LE+
Sbjct: 125 DLGVHLETALRGVIVAERWPKSGLDITITILEA 157
>gi|315046942|ref|XP_003172846.1| 3' exoribonuclease [Arthroderma gypseum CBS 118893]
gi|311343232|gb|EFR02435.1| 3' exoribonuclease [Arthroderma gypseum CBS 118893]
Length = 369
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 24/153 (15%)
Query: 20 PTRKTRPPIF-SGSDVD----WLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF----G 69
PT TR P+F S +DV + RP +R + R + +TG + SASGSAY E
Sbjct: 46 PTGATRAPVFVSCADVKDKSAFERPARTRDAKELRKIYLKTGVIPSASGSAYFELHPSNS 105
Query: 70 NT-----------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDH 115
NT K+I SV GP+ ++ +S L+ +V + FA R + +
Sbjct: 106 NTSGSLIPPSSSLKLICSVNGPKPLSRSTPFSPNLLLSAHVKFAPFAARRRRAHVRDMNE 165
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+D L AL GAII + +PK+ +D+ ++LE
Sbjct: 166 RDLGVHLENALRGAIIGDRWPKSGLDITIMILE 198
>gi|448111337|ref|XP_004201817.1| Piso0_002021 [Millerozyma farinosa CBS 7064]
gi|359464806|emb|CCE88511.1| Piso0_002021 [Millerozyma farinosa CBS 7064]
Length = 278
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNV------ 99
+ R F +TG V++A+GS+Y E N V VSVFGPR + + + C
Sbjct: 39 EVRKVFIKTGLVSNANGSSYIEASNIIVEVSVFGPRPIRGSFTDRASFSVECKFLPYLKQ 98
Query: 100 -SYTTFATPIRGQGSDHKDFSSMLHK-------ALEGAIILETFPKTTVDVFALVLESGG 151
F + + + + HK A I+LE +PK+T+DVF V+ +G
Sbjct: 99 PQEDLFGGDTHANNNGRQGLTEVEHKISQYVETAFLPCILLEKYPKSTIDVFVTVISTGN 158
>gi|425767491|gb|EKV06061.1| 3' exoribonuclease family protein [Penicillium digitatum Pd1]
gi|425769203|gb|EKV07703.1| 3' exoribonuclease family protein [Penicillium digitatum PHI26]
Length = 317
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 28/158 (17%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPA-----FFRTGAVNSASGSAYAEF------ 68
P TRPP+F+ +R Q +P F +TG + +ASGS+Y EF
Sbjct: 10 PPGGTRPPVFASLQESSTGVANRAQRQRQPTELRKIFLKTGLIPTASGSSYLEFEPSASL 69
Query: 69 --------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---Q 111
K+ +V GP+ ++ +S L +V Y FA R +
Sbjct: 70 AAARSNPKSLIPPSSALKLACTVHGPKPLPRSAAFSPNLVLTTHVKYAPFAARKRKGHIR 129
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ +D L AL GAII + +PK+ +D+ ++E+
Sbjct: 130 DASERDLGVHLETALRGAIIADRWPKSGLDITLTIIEA 167
>gi|403218498|emb|CCK72988.1| hypothetical protein KNAG_0M01350 [Kazachstania naganishii CBS
8797]
Length = 247
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
LR D R +++ R A T A +SA GS+Y E GN KV+ V GP E + + +
Sbjct: 12 LRLDGRRWNELRRFQASISTHA-HSADGSSYLEQGNNKVVTLVRGPGEPASRGQLDGQRA 70
Query: 94 RLNCNVSYTTFATPIRGQGSDHK-----DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L +V+ T F+ R + S + + L + E A +L +P+T +DV VLE
Sbjct: 71 TLRVSVNVTKFSKFERSRTSHRNERRVLEIQTSLRRTFEKACLLHLYPRTAIDVELHVLE 130
Query: 149 SGG 151
G
Sbjct: 131 QDG 133
>gi|50288675|ref|XP_446767.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526075|emb|CAG59694.1| unnamed protein product [Candida glabrata]
Length = 246
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
LR D R +++ R F + A+N+ A GS+Y E GN KVI V GP+E + K+ M
Sbjct: 12 LRLDGRRWNELRR--FES-AINTHPHAADGSSYLEQGNNKVITLVKGPKEPTLKSQMDIQ 68
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFAL 145
L V+ T F+ R + S HK + + L + E ++L +P+T +D+
Sbjct: 69 KAILKVTVNITKFSKFERSKSS-HKNERRVLEMQTALVRTFEKNVMLHVYPRTLIDIEIH 127
Query: 146 VLESGG 151
VL+ G
Sbjct: 128 VLQQDG 133
>gi|409077801|gb|EKM78166.1| hypothetical protein AGABI1DRAFT_101423 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426199140|gb|EKV49065.1| hypothetical protein AGABI2DRAFT_191204 [Agaricus bisporus var.
bisporus H97]
Length = 260
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R + R A GSA G T+V+VSVFGPRE+K ++ + +N
Sbjct: 14 RSDGRRQFELREVTINLAQQGHADGSAIITHGLTQVLVSVFGPREAKMRSQTIHDRANIN 73
Query: 97 CNVSYTTFATPIRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+V+ F+ R + S D + + +S L E + +P++ +DV+ VL+ G
Sbjct: 74 VDVNVAAFSAGERRKRSRGDKRILEIASTLKSTFEPVVQTTLYPRSQIDVYVTVLQQDG 132
>gi|402592143|gb|EJW86072.1| 3' exoribonuclease [Wuchereria bancrofti]
Length = 262
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAM----MYSNIGRLNCNVSYTT 103
RP +TG ++ G+ Y EFG+TK+I SV GP+E K+ I NVS +
Sbjct: 35 RPIVMQTGVLHDQKGTVYVEFGSTKIICSVDGPKEITKSTDVDPTEGQIYVFLKNVSAES 94
Query: 104 FATPIRGQGSDHKDFSSMLHKALEGA----IILETFPKTTVDVFALVLESGG 151
+ P S +S + A+E A + LE F K +DV VL G
Sbjct: 95 NSLPGSNSSSISNKENSRIRNAIESALRSIVCLELFCKAQIDVEITVLNDDG 146
>gi|358374939|dbj|GAA91527.1| 3' exoribonuclease family protein [Aspergillus kawachii IFO 4308]
Length = 324
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 23/127 (18%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEF--------------------GNTKVIVSVFGPRESKK 85
+ R F +TG + SASGSAY EF K+ +V GP+ +
Sbjct: 42 ELRKIFLKTGLIPSASGSAYLEFEPSASLAAARSNPQSLIPPSSALKLACTVHGPKPLPR 101
Query: 86 AMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDV 142
+ +S L +V Y FA R + + +D L AL G I+ E +PK+ +D+
Sbjct: 102 SASFSPNVVLTTHVKYAPFAARQRKGHIRDASERDLGVHLETALRGVIVAERWPKSGLDI 161
Query: 143 FALVLES 149
+LE+
Sbjct: 162 TITILEA 168
>gi|169595492|ref|XP_001791170.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
gi|111070860|gb|EAT91980.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
Length = 251
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG--- 93
LR D R +++ R + +A GS+Y E GNTK++VSV GP E K+A G
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGKQAGQRGGNGGQA 72
Query: 94 RLNCNVSYTTFA----TPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTV 140
++ +++ F+ G K+ + A EG ++L +P +T+
Sbjct: 73 KVEVEINFAGFSGMERRRRGGGDKRSKEMEHCVRSAFEGVLLLHLYPHSTI 123
>gi|66802544|ref|XP_635144.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
gi|60463463|gb|EAL61648.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
Length = 247
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 11/126 (8%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKKAMMYSN 91
+ LR D R ++ R G A GSAY E GNTK+I +V+GPRE S K +
Sbjct: 10 EGLRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVYGPREISVSGKGVFDRA 69
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFAL 145
+ + C S ++F+T R K + ++++ +A E I +P++ ++++
Sbjct: 70 V--VKCEFSSSSFSTTERKPQQKTKGDRVTTEIANLVKQAFESTIHTHLYPRSQINIYLQ 127
Query: 146 VLESGG 151
VL+S G
Sbjct: 128 VLQSDG 133
>gi|407920170|gb|EKG13387.1| Exoribonuclease phosphorolytic domain 1 [Macrophomina phaseolina
MS6]
Length = 324
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 70/180 (38%), Gaps = 47/180 (26%)
Query: 1 MAAKPSTTTTAKATYSPI-----------DPTRKTRPPIFSGSDVDWLRPDSRGFHQCRP 49
M + T A TY+P+ PTR +R +R + R
Sbjct: 1 MTDRRRTNAPAGGTYAPVFASFLPNYEGPAPTRPSR---------------TRSPDELRK 45
Query: 50 AFFRTGAVNSASGSAYAEF------------------GNTKVIVSVFGPRESKKAMMYSN 91
F +TG SASGSAY E G+ K+ V GP+ ++ ++
Sbjct: 46 MFLKTGLTPSASGSAYLELTPGDSTPRARRTTLAHATGHLKLSCVVHGPKPLPRSSPFTP 105
Query: 92 IGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + + FAT R + + +D L AL G +I E +PK+ VD+ VLE
Sbjct: 106 YLNLTTTLKFAPFATRTRRGYVRDAAERDLGQHLEAALRGIVIGERWPKSGVDIIITVLE 165
>gi|348678286|gb|EGZ18103.1| hypothetical protein PHYSODRAFT_504652 [Phytophthora sojae]
Length = 713
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 20/135 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-------------- 82
LR D R + R R G + GSAY E GNTKV+ V+GPRE
Sbjct: 27 LRVDGRRSEEVRRIRTRFGLFSRVDGSAYYEQGNTKVVAVVYGPRELRVGPAGGAAAVGT 86
Query: 83 --SKKAMMYSNIGRLNCNVSYTTFAT----PIRGQGSDHKDFSSMLHKALEGAIILETFP 136
A +NC + FAT P R + S + + E + + +P
Sbjct: 87 GSGNAASNTQPRAVVNCEFTQAAFATSERKPQRSGDRKKVEMSLAVKQIFEACVQTQLYP 146
Query: 137 KTTVDVFALVLESGG 151
++ +D+F VL + G
Sbjct: 147 RSQIDIFVQVLHADG 161
>gi|303281836|ref|XP_003060210.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458865|gb|EEH56162.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 245
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNI 92
++ LR D R + R G + +A GSA GNT+V+ +V GPRE +
Sbjct: 6 LEGLRLDGRRPKETRQMRCAMGVLPAADGSAEFRAGNTRVMCAVHGPRECVNRGERDDER 65
Query: 93 GRLNCNVSYTTFAT---PIRGQGSDHK-DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ C S F+T RG+G + + ++ +ALE +++ P++ ++V VL+
Sbjct: 66 AIIKCEFSQAAFSTGERRARGKGDRRSVELALVIRQALEATVLVHLAPRSEINVMIQVLQ 125
Query: 149 SGG 151
+ G
Sbjct: 126 ADG 128
>gi|326429591|gb|EGD75161.1| hypothetical protein PTSG_06814 [Salpingoeca sp. ATCC 50818]
Length = 241
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 10/124 (8%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNI 92
V+ LR D R ++ R G A GSAY + G+TKV+ V GP++ KA +
Sbjct: 7 VEGLREDGRRANELRRVEANVGMFPHADGSAYFQQGDTKVVAIVNGPKQGVGKA---GDA 63
Query: 93 GRLNCNVSYTTFAT-----PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
G++ C+ F+T P+R + + S + E AI+ + +P++ +++ VL
Sbjct: 64 GKVVCDFEMAAFSTTQRRKPLR-LDRKNAELGSKIASTFESAIMTDLYPRSQIEISVQVL 122
Query: 148 ESGG 151
++ G
Sbjct: 123 QADG 126
>gi|330917879|ref|XP_003297997.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
gi|311329045|gb|EFQ93909.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
Length = 250
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI--- 92
LR D R +++ R + +A GS+Y E GNTK++VSV GP E +++
Sbjct: 12 LLRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQ 71
Query: 93 GRLNCNVSYTTFATPIRGQGSDHKDFSSMLH---KALEGAIILETFPKTTV 140
++ +++ F+ R + K S M H A EG ++L +P + +
Sbjct: 72 AKVEVEINFAGFSGVERRKRKSDKRTSEMEHCIRSAFEGVLLLHLYPHSII 122
>gi|428181007|gb|EKX49872.1| hypothetical protein GUITHDRAFT_104267 [Guillardia theta CCMP2712]
Length = 482
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D+ LR D R ++ R + G + +A+GSA GNTK++ +V GPRE + ++ +
Sbjct: 8 DLSGLRIDGRRPNELRKVVIKHGNLQNATGSAIFHHGNTKIVATVCGPRECTSRSKELHD 67
Query: 92 IGRLNCN--VSYTTFATPIRGQGSDH--KDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
+ C+ VS + ++ + D + S++ + E I FP++ +D+ ++
Sbjct: 68 RAVVTCSVIVSPSAYSHRRKRNRGDRVVAELESLVRQTFEELIFTSIFPRSQIDISVEIV 127
Query: 148 ESGG 151
++ G
Sbjct: 128 QADG 131
>gi|294943374|ref|XP_002783844.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
50983]
gi|239896637|gb|EER15640.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
50983]
Length = 248
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMM------YSN 91
R D R ++ R + G SA GSA + G TKV+ VFGPR + A + +
Sbjct: 14 RLDGRRPNELRHLTLKIGDAPSADGSATLQQGLTKVVAHVFGPRPLQAASVGRAAGTMAR 73
Query: 92 IGRLNCNVSYTT--FATPIRGQGS----DHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
G NV Y T FAT R + + + + L + ++ A++ E FPK+ +DV
Sbjct: 74 QGEAIVNVVYRTSSFATIDRKRRTTGDRNSTERQLWLQRIIQDAVLTEMFPKSCIDVHLT 133
Query: 146 VLESGG 151
+L+ G
Sbjct: 134 ILQEDG 139
>gi|356532014|ref|XP_003534569.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 243
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R +Q RP ++ A GSA G TKV+ +V+GP+ K
Sbjct: 5 RPDGRTPNQLRPLACSCSILHRAHGSASWAQGETKVLAAVYGPKAGTKKNENPE------ 58
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S P GQ G K++ +L + LE I +P TT V V+ G
Sbjct: 59 KASIEVIWKPKTGQIGKLEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDG 113
>gi|145251293|ref|XP_001397160.1| 3' exoribonuclease family protein [Aspergillus niger CBS 513.88]
gi|134082691|emb|CAK42584.1| unnamed protein product [Aspergillus niger]
gi|350636483|gb|EHA24843.1| hypothetical protein ASPNIDRAFT_53512 [Aspergillus niger ATCC 1015]
Length = 324
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 23/127 (18%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNT--------------------KVIVSVFGPRESKK 85
+ R F +TG + SASGS+Y EF + K+ +V GP+ +
Sbjct: 42 ELRKIFLKTGLIPSASGSSYLEFEPSASLAAARSNPQSLIPPSSALKLACTVHGPKPLPR 101
Query: 86 AMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDV 142
+ +S L +V Y FA R + + +D L AL G I+ E +PK+ +D+
Sbjct: 102 SASFSPNVVLTTHVKYAPFAARQRKGHIRDASERDLGVHLETALRGVIVAERWPKSGLDI 161
Query: 143 FALVLES 149
+LE+
Sbjct: 162 TITILEA 168
>gi|328850748|gb|EGF99909.1| hypothetical protein MELLADRAFT_68249 [Melampsora larici-populina
98AG31]
Length = 271
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 16/131 (12%)
Query: 37 LRPDSRGFHQCRPAFFRT--GAVNSASGSAYAEFGNTKVIVSVFGPRE-------SKKAM 87
LR D+R ++ R F+ + NS GS+ G TKV SV GP+E + K+
Sbjct: 12 LRQDNRRPYELRQLDFKILKSSPNSLDGSSIVSHGLTKVTSSVSGPKEITSSSSSNHKSN 71
Query: 88 MYS---NIGRLNCNVSYTTFATPIRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTV 140
+ S N+G + V+ T F+ R + S D + D S + E I+L+ +P++ +
Sbjct: 72 LKSHTNNVGSIQVYVNMTNFSQSDRKKLSKVDKRLMDLSFSIQNTFESVIMLKLYPRSLI 131
Query: 141 DVFALVLESGG 151
++F VL+ G
Sbjct: 132 EIFIEVLQEDG 142
>gi|366992712|ref|XP_003676121.1| hypothetical protein NCAS_0D01780 [Naumovozyma castellii CBS 4309]
gi|342301987|emb|CCC69759.1| hypothetical protein NCAS_0D01780 [Naumovozyma castellii CBS 4309]
Length = 246
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSAS-GSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R + AS GS+Y E GN KVI V GP+E + ++ M +
Sbjct: 12 LRLDGRRWNELRRFECSINTHSHASDGSSYLEQGNNKVITLVKGPKEPTLRSQMDTEKAI 71
Query: 95 LNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L +V+ T F+ R + S HK + + L + E ++L +P+T +D+ VL+
Sbjct: 72 LKISVNITQFSKFERSKSS-HKNERRVLEMQTALIRTFEKNVMLNIYPRTLIDIEVHVLQ 130
Query: 149 SGG 151
G
Sbjct: 131 QDG 133
>gi|328859073|gb|EGG08183.1| hypothetical protein MELLADRAFT_105134 [Melampsora larici-populina
98AG31]
Length = 285
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFG 79
PT + PI + D R D R Q RP +T V+SA+GS+Y E + K+I +V+G
Sbjct: 32 PTFISTEPIKQDNKQDNTRSDGRTNQQFRPIHVKTKVVSSANGSSYLETTDCKLICAVYG 91
Query: 80 PRESKKAMMYSNIGRLNCNVSYT---TFATPIRGQGSDHKDFSSMLHKALEGAIILETFP 136
P+ A S+ LN + +T + + + S LH++L +++L P
Sbjct: 92 PKPRTTA--NSSSSNLNIHFKFTPFSLSTSFTSSISTLESNLSQALHQSLAPSLLLN--P 147
Query: 137 KTTVDVFALVLES 149
D+ VL+S
Sbjct: 148 TEFYDLHLTVLQS 160
>gi|347837487|emb|CCD52059.1| similar to 3' exoribonuclease family protein [Botryotinia
fuckeliana]
Length = 317
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 35/160 (21%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDS----------RGFHQCRPAFFRTGAVNSASGSAYAEF- 68
P T PP+F + +L DS R + R F +TG SASGSAY E
Sbjct: 10 PPGGTNPPVF----LKYLTKDSKNRPERPSRNRQPNVLRKIFLKTGVTPSASGSAYLELE 65
Query: 69 -----------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG- 110
K+ +V GPR K+ +S L +V Y FA R
Sbjct: 66 PSQPSNQSAPGLASLSTSGLKLACTVHGPRPLPKSAAFSPHMILQTHVKYAPFAARRRRG 125
Query: 111 --QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ + +D L AL G II + +PK+ V++ +LE
Sbjct: 126 YVRDTSERDLGVHLETALRGVIIGDRWPKSGVEINITILE 165
>gi|302667970|ref|XP_003025563.1| hypothetical protein TRV_00203 [Trichophyton verrucosum HKI 0517]
gi|291189678|gb|EFE44952.1| hypothetical protein TRV_00203 [Trichophyton verrucosum HKI 0517]
Length = 304
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 21/127 (16%)
Query: 43 GFHQCRPAFF---RTGAVNSASGSAYAEF---------------GNTKVIVSVFGPRESK 84
G QC + +TG + SASGSAY E + K+I SV GP+
Sbjct: 7 GSKQCMVLIYLDLKTGVIPSASGSAYFELHPSNSSSGGSLIPPSSSLKLICSVNGPKPLS 66
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
++ +S L+ +V + FA R + + +D L AL GAII + +PK+ +D
Sbjct: 67 RSTPFSPNLLLSAHVKFAPFANRRRRAHVRDMNERDLGVHLENALRGAIIGDRWPKSGLD 126
Query: 142 VFALVLE 148
+ ++LE
Sbjct: 127 ITIMILE 133
>gi|344232061|gb|EGV63940.1| hypothetical protein CANTEDRAFT_105628 [Candida tenuis ATCC 10573]
Length = 268
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC---------- 97
+ F +T +++A+GS+Y E G+T V VSVFGPR K + + + C
Sbjct: 46 QKMFMKTNFISNANGSSYIEHGDTIVQVSVFGPRPIKSSFIEQASFSVECRFLPHLKQDD 105
Query: 98 --NVSYTTFATPIRGQG---SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
++ + P G ++HK SS + L +I+L+ +PK+T+D+ V+E
Sbjct: 106 ALDIDGDHHSNPNGRTGLSYTEHK-ISSFVESCLVPSILLDKYPKSTIDLHITVIE 160
>gi|356568370|ref|XP_003552384.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 243
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R +Q RP ++ + GSA G TKV+ +V+GP+ K
Sbjct: 5 RPDGRTPNQLRPLVCSCSILHRSHGSASWAQGETKVLAAVYGPKAGTKKSENPE------ 58
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S P GQ G K++ +L + LE I +P TT V V+ G
Sbjct: 59 KASIEVIWKPKTGQIGKVEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDG 113
>gi|156845783|ref|XP_001645781.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
70294]
gi|156116449|gb|EDO17923.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
70294]
Length = 246
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
LR D R +++ R T A +++ GS+Y E GN K++ V GP+E ++ + +
Sbjct: 12 LRLDGRRWNELRRFECSINTHA-HASDGSSYLEQGNNKIVTLVKGPQEPILRSQLDATKA 70
Query: 94 RLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
LN V+ T F+ R + S HK + + L + E ++L +P+T +D+ VL
Sbjct: 71 SLNITVNITKFSKMERSKSS-HKNERRVLEMQTALVRTFEKNVMLHLYPRTLIDIEIHVL 129
Query: 148 ESGG 151
+ G
Sbjct: 130 QQDG 133
>gi|344304118|gb|EGW34367.1| hypothetical protein SPAPADRAFT_134338 [Spathaspora passalidarum
NRRL Y-27907]
Length = 272
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
+P + P F + + +A+GSAY E GNT + VS+FGPR + + + + C
Sbjct: 26 KPSATNTQSIPPFFLKHSIIENANGSAYLEIGNTLIEVSIFGPRPIRGSFVDHASVSVEC 85
Query: 98 NV--------SYTTFATPIRGQGSDHKDFSSMLHKALEGAI----ILETFPKTTVDVFAL 145
+TF + + + D + LEG I +LE +PK+++DV
Sbjct: 86 KFHPYITPQPQASTFNSAKQTGRTGLTDVEHRISNYLEGCILPCLLLEKYPKSSIDVHVS 145
Query: 146 VL 147
++
Sbjct: 146 II 147
>gi|156049529|ref|XP_001590731.1| hypothetical protein SS1G_08471 [Sclerotinia sclerotiorum 1980]
gi|154692870|gb|EDN92608.1| hypothetical protein SS1G_08471 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 317
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 21/122 (17%)
Query: 48 RPAFFRTGAVNSASGSAYAEF------------------GNTKVIVSVFGPRESKKAMMY 89
R F +TG SASGSAY E K+ +V GPR K+ +
Sbjct: 44 RKIFLKTGVTPSASGSAYLELEPSQPSNQSAPGLASLSTSGLKLTCTVHGPRPLSKSAAF 103
Query: 90 SNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
S L +V Y FA+ R + + +D L AL G II + +PK+ V++ +
Sbjct: 104 SPHMILQTHVKYAPFASRRRRGYIRDTSERDLGVHLETALRGVIIGDRWPKSGVEINITI 163
Query: 147 LE 148
LE
Sbjct: 164 LE 165
>gi|344231786|gb|EGV63668.1| ribosomal protein S5 domain 2-like protein [Candida tenuis ATCC
10573]
gi|344231787|gb|EGV63669.1| hypothetical protein CANTEDRAFT_114736 [Candida tenuis ATCC 10573]
Length = 242
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGR 94
LR D R +++ R + NS+ GS+Y E GN+K+I V GP E K ++ M N
Sbjct: 12 LRVDGRRWNELRRFECKINTHPNSSDGSSYVEQGNSKIICMVQGPMEPKLRSQMDVNKAN 71
Query: 95 LNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ ++S F+T R + S ++ + + + E +II +P+T + + VL
Sbjct: 72 IEVSISIAHFSTFHRKKRSKNEKRIVELKTAIENTFENSIISHLYPRTFIQINIQVLAQD 131
Query: 151 G 151
G
Sbjct: 132 G 132
>gi|255711166|ref|XP_002551866.1| KLTH0B01738p [Lachancea thermotolerans]
gi|238933244|emb|CAR21428.1| KLTH0B01738p [Lachancea thermotolerans CBS 6340]
Length = 245
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
LR D R +++ R T A N++ GS+Y E GN KVI V GP+E K ++ M
Sbjct: 12 LRVDGRRWNELRRLECSINTHA-NASDGSSYLEQGNNKVITLVTGPQEPKLRSQMNVTKA 70
Query: 94 RLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
++ ++ T F+ R + S HK + + L + E ++L +P+T +++ VL
Sbjct: 71 TISVALNITRFSKIERSKSS-HKNERRVLEMQTALVRTFEKNVMLHLYPRTQIEIQIHVL 129
Query: 148 ESGG 151
+ G
Sbjct: 130 QQDG 133
>gi|119191880|ref|XP_001246546.1| hypothetical protein CIMG_00317 [Coccidioides immitis RS]
gi|392864223|gb|EJB10765.1| 3' exoribonuclease [Coccidioides immitis RS]
Length = 331
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 20/128 (15%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEF-----------------GNTKVIVSVFGPRES 83
SR + R F ++G + SASGSAY E + K++ +V GPR
Sbjct: 38 SRKAAELRKIFLKSGVIPSASGSAYLELQPSNDPAYKSRTLIPPSSSLKLVCTVHGPRPL 97
Query: 84 KKAMMYSNIGRLNCNVSYTTFA-TPIRGQGSD--HKDFSSMLHKALEGAIILETFPKTTV 140
++ +S L+ +V + FA RG D +D + L AL G II + +PK+ +
Sbjct: 98 PRSAPFSPNLLLSTHVKFAPFAGRRRRGYIRDMYERDLAVHLETALGGMIIGDRWPKSGL 157
Query: 141 DVFALVLE 148
DV +LE
Sbjct: 158 DVTVNILE 165
>gi|294659898|ref|XP_462331.2| DEHA2G18194p [Debaryomyces hansenii CBS767]
gi|199434319|emb|CAG90837.2| DEHA2G18194p [Debaryomyces hansenii CBS767]
Length = 245
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R +S+ GS+Y E GNTK+I V GP E S ++ S+
Sbjct: 12 LRIDGRRWNELRRFECRINTHPSSSDGSSYIEQGNTKIICMVQGPMEPSLRSQTNSSKAS 71
Query: 95 LNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVL-ES 149
+ N+S F+T R + ++ + + L + E ++I + +P+T + + VL +
Sbjct: 72 IEINLSVANFSTIERKKRLKNEKRLIELKTTLERTFEQSVICKLYPRTVIQINLHVLCQD 131
Query: 150 GG 151
GG
Sbjct: 132 GG 133
>gi|303313275|ref|XP_003066649.1| hypothetical protein CPC735_058740 [Coccidioides posadasii C735
delta SOWgp]
gi|240106311|gb|EER24504.1| hypothetical protein CPC735_058740 [Coccidioides posadasii C735
delta SOWgp]
Length = 790
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 20/128 (15%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEF-----------------GNTKVIVSVFGPRES 83
SR + R F ++G + SASGSAY E + K++ +V GPR
Sbjct: 38 SRKAAELRKIFLKSGVIPSASGSAYLELQPSNDPAYKSKTLIPPSSSLKLVCTVHGPRPL 97
Query: 84 KKAMMYSNIGRLNCNVSYTTFA-TPIRGQGSD--HKDFSSMLHKALEGAIILETFPKTTV 140
++ +S L+ +V + FA RG D +D + L AL G II + +PK+ +
Sbjct: 98 PRSAPFSPNLILSTHVKFAPFAGRRRRGYIRDMYERDLAVHLETALGGMIIGDRWPKSGL 157
Query: 141 DVFALVLE 148
DV +LE
Sbjct: 158 DVTVNILE 165
>gi|190346269|gb|EDK38314.2| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
6260]
Length = 242
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGR 94
LR D R +++ R + NS++GS+Y E GNTKVI V GP E + ++ + +
Sbjct: 12 LRVDGRRWNELRRFECKINTHPNSSTGSSYVEQGNTKVICMVEGPSEPETRSQVDVSRAT 71
Query: 95 LNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ N++ +F+T R + ++ + + + + E ++I + +P+T + V VL
Sbjct: 72 IEVNIAVASFSTIERKKRLKNEKRIIELKATMERTFEQSVICKLYPRTVIKVNLHVLAQD 131
Query: 151 G 151
G
Sbjct: 132 G 132
>gi|365984727|ref|XP_003669196.1| hypothetical protein NDAI_0C02930 [Naumovozyma dairenensis CBS 421]
gi|343767964|emb|CCD23953.1| hypothetical protein NDAI_0C02930 [Naumovozyma dairenensis CBS 421]
Length = 246
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 13/125 (10%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
LR D R +++ R F + ++N+ + GS+Y E GN K+I V GP+E + ++ + +N
Sbjct: 12 LRLDGRRWNELRR--FES-SINTHPHASDGSSYLEQGNNKIITLVKGPKEPTSRSQVDTN 68
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK-----DFSSMLHKALEGAIILETFPKTTVDVFALV 146
L +V+ T F+ R + S + + L + E ++L +P+T +D+ V
Sbjct: 69 KALLRISVNITQFSKFERSKSSHRNERRVLEMQTALVRTFEKNVMLNLYPRTLIDIEIHV 128
Query: 147 LESGG 151
L+ G
Sbjct: 129 LQQDG 133
>gi|221053137|ref|XP_002257943.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
gi|193807775|emb|CAQ38480.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
Length = 268
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 14/120 (11%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR-ESK-----KAMMYSN 91
R ++R ++ R F + G + S + GNTK++ ++GP+ +SK K ++
Sbjct: 32 RINNRKNNEIRDMFIKLGTDGYSDASCFYSLGNTKILALIYGPKPDSKNATYDKGKVFLE 91
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
I LN N R ++ ++L + + I+L+ +P+ ++++ L++++ G
Sbjct: 92 IKSLNMNDD--------RANDESDENIKNLLLECVSSVILLDQYPQCSINIKCLIIQNDG 143
>gi|444322810|ref|XP_004182046.1| hypothetical protein TBLA_0H02430 [Tetrapisispora blattae CBS 6284]
gi|387515092|emb|CCH62527.1| hypothetical protein TBLA_0H02430 [Tetrapisispora blattae CBS 6284]
Length = 245
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
LR D R +++ R T A +++ GS+Y E GN KVI V GP+E K+ +
Sbjct: 12 LRQDGRRWNELRRFDCSINTHA-HTSDGSSYLEQGNNKVITIVKGPQEPPLKSQLDQTKA 70
Query: 94 RLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
LN +++ T F+ R + + HK + ++L K + I++ +P+T +D+ VL
Sbjct: 71 TLNISLNITPFSKFERSK-TQHKNEKRILELQTILIKTFKKNILMHLYPRTLIDIQIHVL 129
Query: 148 ESGG 151
+ G
Sbjct: 130 QQDG 133
>gi|299742531|ref|XP_001832547.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
gi|298405226|gb|EAU89296.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
Length = 263
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R ++ R A GSA G T+V+VSV GPRE+K ++ + + +N
Sbjct: 17 RSDGRRQYELRDLSIDLSRHGEADGSALISHGLTQVLVSVHGPREAKMRSHTFHDRANIN 76
Query: 97 CNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V+ +F+T R + D + +F++ + E + +P++ +D++ +L+ G
Sbjct: 77 VEVTVASFSTGERRKRLKGDKRILEFAATIKSTFEPVVRTSLYPRSQIDIYIQILQQDG 135
>gi|374724589|gb|EHR76669.1| exosome complex component RRP41 [uncultured marine group II
euryarchaeote]
Length = 242
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D LR D R + RP G + +A GSA G + +V+GP E+ + + +
Sbjct: 13 DGLRLDGRKIDEMRPMTIEAGVLPAADGSAMVTHGLNVAVAAVYGPMEAHPRKIQRQDRA 72
Query: 94 RLNCNVSYTTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFP--KTTVDVFALVLE 148
++ + F+T R G ++ S + +ALE +++E +P K V++ L E
Sbjct: 73 VIDVRYNMAPFSTSDRIRPGYNRRSREISKVTAEALESVVLVERYPRSKIRVEIEILAAE 132
Query: 149 SG 150
+G
Sbjct: 133 AG 134
>gi|356504159|ref|XP_003520866.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP41-like [Glycine max]
Length = 207
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ LR D R + + GAV+ A GS+ E GNT+V +V+GPRE + ++ S+
Sbjct: 7 EGLRLDGRXPMEMQQIRAEIGAVSKADGSSIFEMGNTEVTAAVYGPREVQNRSQQISSHA 66
Query: 94 RLNCNVSYTTFAT--PIRGQGSDHK--DFSSMLHKALEGAIILETFPKTTV 140
+ C S F+T +R D + + S ++ + +E I+ P + V
Sbjct: 67 LVRCEYSLANFSTGDRMRKSKGDRRSTEISLVIXQTMEACILTHLLPHSPV 117
>gi|449465139|ref|XP_004150286.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis
sativus]
Length = 243
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP +N A GSA G+TKV+ +V+GP+ K
Sbjct: 5 RDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S P GQ G ++ +L + L+ IL T P TT + V+ G
Sbjct: 59 KASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDG 113
>gi|390371124|dbj|GAB65005.1| hypothetical protein PCYB_042070 [Plasmodium cynomolgi strain B]
Length = 268
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R ++R ++ R F + GA + S + GNTK++ ++GP+ K Y G++
Sbjct: 32 RINNRKNNEIRDMFIKLGADGYSDASCFYSLGNTKILALIYGPKPDSKNATYDK-GKVFL 90
Query: 98 NVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ SD ++ ++L + + I+L+ +P+ ++++ L++++ G
Sbjct: 91 EIKSLNMNDDGANDESD-ENIKNLLIECVSSVILLDQYPQCSINIKCLIIQNDG 143
>gi|449511723|ref|XP_004164036.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis
sativus]
Length = 243
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP +N A GSA G+TKV+ +V+GP+ K
Sbjct: 5 RDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S P GQ G ++ +L + L+ IL T P TT + V+ G
Sbjct: 59 KASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDG 113
>gi|320036434|gb|EFW18373.1| 3' exoribonuclease [Coccidioides posadasii str. Silveira]
Length = 312
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 20/128 (15%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEF-----------------GNTKVIVSVFGPRES 83
SR + R F ++G + SASGSAY E + K++ +V GPR
Sbjct: 19 SRKAAELRKIFLKSGVIPSASGSAYLELQPSNDPAYKSKTLIPPSSSLKLVCTVHGPRPL 78
Query: 84 KKAMMYSNIGRLNCNVSYTTFA-TPIRGQGSD--HKDFSSMLHKALEGAIILETFPKTTV 140
++ +S L+ +V + FA RG D +D + L AL G II + +PK+ +
Sbjct: 79 PRSAPFSPNLILSTHVKFAPFAGRRRRGYIRDMYERDLAVHLETALGGMIIGDRWPKSGL 138
Query: 141 DVFALVLE 148
DV +LE
Sbjct: 139 DVTVNILE 146
>gi|357507241|ref|XP_003623909.1| Exosome complex exonuclease RRP46 [Medicago truncatula]
gi|355498924|gb|AES80127.1| Exosome complex exonuclease RRP46 [Medicago truncatula]
Length = 243
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R +Q RP ++ A GSA G TKV+ +V+GP+ K
Sbjct: 5 RPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPE------ 58
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S P G G +++ +L K LE I +P TT V V+ G
Sbjct: 59 KASIEVIWKPNTGHVGQADREYEMILKKTLESICIRTIYPNTTTSVIVQVVHDDG 113
>gi|302505236|ref|XP_003014839.1| hypothetical protein ARB_07400 [Arthroderma benhamiae CBS 112371]
gi|291178145|gb|EFE33936.1| hypothetical protein ARB_07400 [Arthroderma benhamiae CBS 112371]
Length = 293
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 52 FRTGAVNSASGSAYAEF---------------GNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+TG + SASGSAY E + K+I SV GP+ ++ +S L+
Sbjct: 8 LKTGVIPSASGSAYFELHPSNSSSGGSLIPPSSSLKLICSVNGPKPLSRSTPFSPNLLLS 67
Query: 97 CNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+V + FA R + + +D L AL GAII + +PK+ +D+ ++LE
Sbjct: 68 AHVKFAPFANRRRRAHVRDMNERDLGVHLENALRGAIIGDRWPKSGLDITIMILE 122
>gi|307111365|gb|EFN59599.1| hypothetical protein CHLNCDRAFT_132993 [Chlorella variabilis]
Length = 292
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 27 PIFSGSDVDWL--------RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVF 78
P+ S +V+W+ R D R RP + G + A+GSA + G T VIV V
Sbjct: 4 PLISQGEVEWITTGVACNCRNDGRQREDFRPLSVKLGELAQATGSARVQLGETDVIVGVK 63
Query: 79 GPRESKKAMMYSNIGRLNCNVSYTTFATP-IRGQGSDHKDFSSMLHKALE 127
S + + GRLN V + A+P RG+G D + + L +ALE
Sbjct: 64 AEIGSPD-LDRPDCGRLNFAVECSPVASPAFRGRGGD--ELAGELSRALE 110
>gi|254585869|ref|XP_002498502.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
gi|238941396|emb|CAR29569.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
Length = 245
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
LR D R +++ R T + ++A GS+Y E GN K+I V GP+E S ++ M
Sbjct: 12 LRVDGRRWNELRRFDCSINTHS-HAADGSSYLEQGNNKIITLVKGPKEPSLRSQMDPTKA 70
Query: 94 RLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
L +V+ T F+ R + S HK + + L + ++L +P+T +D+ VL
Sbjct: 71 LLKVSVNITKFSKTERSKTS-HKNERRVLEIQTALTRTFNKNVMLHIYPRTLIDIEIHVL 129
Query: 148 ESGG 151
+ G
Sbjct: 130 QQDG 133
>gi|302672677|ref|XP_003026026.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
gi|300099706|gb|EFI91123.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
Length = 259
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R ++ R SA GSA G T+V+VSV+GPRE K ++ + +N
Sbjct: 14 RSDGRKQYELRDMTIDLSPRASADGSALVSHGLTQVLVSVYGPREPKQRSQSAHDRATIN 73
Query: 97 CNVSYTTFAT----PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V F++ ++ + + E ++ +P++T+DVF +L+ G
Sbjct: 74 VEVGTAPFSSGERRKRGRGDKRTQELCYTVQQTFEPVVLTSIYPRSTIDVFITILQQDG 132
>gi|430813508|emb|CCJ29143.1| unnamed protein product [Pneumocystis jirovecii]
Length = 250
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNI 92
++ R D R +++ R + N A GS+Y E GNTKVI V GP E + K+ + +
Sbjct: 8 IEGFRIDGRRWNELRHFTAKVDIDNFADGSSYVEQGNTKVICMVHGPIEPNTKSKVSLDR 67
Query: 93 GRLNCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
R+ ++S F++ R + SD + ++ + + K E AI P++ +++ VL
Sbjct: 68 ERITIDISIAAFSSVERKKRTKSDKRIQEYVACIQKVFEKAIQTGLHPRSEINICIQVLA 127
Query: 149 SGG 151
G
Sbjct: 128 QDG 130
>gi|60677861|gb|AAX33437.1| RE29317p [Drosophila melanogaster]
Length = 261
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 67 EFGNTKVIVSVFGPRESKKA-MMYSNIGRLNCNVSYTTFAT-PIRGQGSDHKDFSSMLHK 124
E+GNTKV+ V P+E +A N+G LNC V++ F+T + + SSML K
Sbjct: 2 EYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFSTGDLDSVPERERHLSSMLTK 61
Query: 125 ALEGAIILETFPKTTVDVFALVLESGG 151
A+E + F +D+ L+L+ G
Sbjct: 62 AMEPVVCRTEFLNFQLDIRVLILDDDG 88
>gi|146417428|ref|XP_001484683.1| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
6260]
Length = 242
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGR 94
LR D R +++ R + NS +GS+Y E GNTKVI V GP E + ++ + +
Sbjct: 12 LRVDGRRWNELRRFECKINTHPNSLTGSSYVEQGNTKVICMVEGPLEPETRSQVDVSRAT 71
Query: 95 LNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ N++ +F+T R + ++ + + + + E ++I + +P+T + V VL
Sbjct: 72 IEVNIAVASFSTIERKKRLKNEKRIIELKATMERTFEQSVICKLYPRTVIKVNLHVLAQD 131
Query: 151 G 151
G
Sbjct: 132 G 132
>gi|213407144|ref|XP_002174343.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
yFS275]
gi|212002390|gb|EEB08050.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
yFS275]
Length = 243
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 15/125 (12%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE------SKKAMMYS 90
LR D R +++ R R G +A GS++ + GNT+V+ +V GP E SK+ +
Sbjct: 13 LRQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNVNGPSEPYIKGKSKQEKAFI 72
Query: 91 NIGRLNCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALV 146
N+ +++ F+ R + SD + + + + E AI +E +PK+ + + V
Sbjct: 73 NV-----ELNFAPFSLIDRKKRHRSDKRIQEQCVAIQRTFEQAIQVELYPKSQISISLNV 127
Query: 147 LESGG 151
LE G
Sbjct: 128 LEDDG 132
>gi|170582819|ref|XP_001896302.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
gi|158596526|gb|EDP34857.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
Length = 277
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA--------MMYSNIGRLNCNV 99
R +TG ++ G+ Y EFG+TK+I SV GP+E K+ +Y + ++
Sbjct: 50 RSIVMQTGVLHDQKGTVYVEFGSTKIICSVDGPKEITKSADVDPTEGQIYVFLKNISAES 109
Query: 100 SYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + + + + + AL + LE F K +DV VL G
Sbjct: 110 NSLSGSNSFSASNKESNRIRNAIESALRSIVCLELFCKAQIDVEITVLNDDG 161
>gi|167043479|gb|ABZ08176.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
microorganism HF4000_APKG2H5]
Length = 238
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R RP G V A+GSA +G VI +V+GP E+ + + + L+
Sbjct: 16 RMDGRKPADLRPISIEVGVVPVAAGSACVRWGTNHVIAAVYGPMEAHPRKISRQDRAVLD 75
Query: 97 CNVSYTTFATPIR---GQGSDHKDFSSMLHKALEGAIILETFP--KTTVDVFALVLESG 150
+ F+T R G ++ S + ALE ++LE +P K V++ L E+G
Sbjct: 76 VRYNMAPFSTTDRIRPGFNRRSREISKVTSDALESVVLLEMYPRSKIRVEIEILCAEAG 134
>gi|395323371|gb|EJF55845.1| hypothetical protein DICSQDRAFT_150740 [Dichomitus squalens
LYAD-421 SS1]
Length = 264
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R ++ R +A GSA G T+V+V+VFGPRE+K ++ + LN
Sbjct: 14 RSDGRKQYELRDITIDLTQQGTADGSAQLTHGLTQVLVTVFGPREAKMRSQTLHDRAVLN 73
Query: 97 CNVSYTTFATPIRGQGSDHK-------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+S F+T G+ + ++M+ E + +P++ +D++ VL+
Sbjct: 74 VEMSVAPFST---GERRKRSRADRRILEMAAMIASTFEPVVQTNLYPRSQIDIYVHVLQQ 130
Query: 150 GG 151
G
Sbjct: 131 DG 132
>gi|302667165|ref|XP_003025173.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
gi|291189263|gb|EFE44562.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
Length = 302
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 11/126 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-L 95
LR D R +++ R + ++SGS+Y GNT V+ +V GP E K++ G +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 96 NCNVSYTTFATPIRGQ-------GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFAL 145
N V+ FA R + G D + + +++L A + I +P++T+ V
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 146 VLESGG 151
VL S G
Sbjct: 134 VLSSDG 139
>gi|302502983|ref|XP_003013452.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
gi|291177016|gb|EFE32812.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
Length = 302
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 11/126 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-L 95
LR D R +++ R + ++SGS+Y GNT V+ +V GP E K++ G +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 96 NCNVSYTTFATPIRGQ-------GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFAL 145
N V+ FA R + G D + + +++L A + I +P++T+ V
Sbjct: 74 NVVVNLAGFANVDRKKKSAAGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 146 VLESGG 151
VL S G
Sbjct: 134 VLSSDG 139
>gi|41615042|ref|NP_963540.1| exosome complex exonuclease Rrp41 [Nanoarchaeum equitans Kin4-M]
gi|40068766|gb|AAR39101.1| NEQ248 [Nanoarchaeum equitans Kin4-M]
Length = 233
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 20/113 (17%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVF---GPRESKKAMMYSNIG 93
+R D R +++ R + G ++ A GSAY GNT I +V+ G +S
Sbjct: 1 MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVYLKPGREQS---------- 50
Query: 94 RLNCNVSYTT--FATPIR-GQGSDHK--DFSSMLHKALEGAIILETFPKTTVD 141
N VSY FA R G G + + S ++ KALE AII E P T++
Sbjct: 51 --NLKVSYRMLPFAGEERKGLGLTRREIELSYIIAKALEPAIIFEEIPYLTIE 101
>gi|45185722|ref|NP_983438.1| ACR035Wp [Ashbya gossypii ATCC 10895]
gi|44981477|gb|AAS51262.1| ACR035Wp [Ashbya gossypii ATCC 10895]
gi|374106644|gb|AEY95553.1| FACR035Wp [Ashbya gossypii FDAG1]
Length = 246
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 15/128 (11%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRE-SKKAMMY 89
+ LR D R +++ R F ++N+ A GS+Y E GN K+I V GP E + ++ +
Sbjct: 10 EGLRLDGRRWNELRR--FEC-SINTHPTAADGSSYLEQGNNKLITLVTGPHEPALRSQVN 66
Query: 90 SNIGRLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVF 143
+ L V+ T FA R + + HK + + L + E ++L+ +P+T +DV
Sbjct: 67 PSKATLTVTVNMTKFAAAERSK-TGHKNERRILEMQTALVRTFEKNVMLQLYPRTAIDVQ 125
Query: 144 ALVLESGG 151
VL++ G
Sbjct: 126 VHVLQNDG 133
>gi|351701756|gb|EHB04675.1| Exosome complex exonuclease MTR3 [Heterocephalus glaber]
Length = 167
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP +D D P +R + RP + R G + A GSAY E G+TKV+ +V GPR+
Sbjct: 13 ESQPPQLYATDEDEA-PAARDPVRLRPVYARAGLLTQAKGSAYLEAGDTKVLCAVSGPRQ 71
Query: 83 SK 84
++
Sbjct: 72 AE 73
>gi|219127863|ref|XP_002184146.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404377|gb|EEC44324.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 274
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTG--AVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
LR D R H+ R + +V++ SGSA E G T V+ +V GP + ++A +
Sbjct: 16 LRNDGRKPHEIRRMRVQMSPLSVSTISGSALVEMGLTVVLATVRGPVDCLRRADENPDQA 75
Query: 94 RLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
L+ V F++ + ++ K + S ML +A+E AI+L +PK+ +++ VL
Sbjct: 76 VLDVTVQSAPFSSSADRRVANPKTDRRLIEASHMLKRAMEAAILLHLYPKSRIELVVSVL 135
Query: 148 ESGG 151
G
Sbjct: 136 ADDG 139
>gi|19114994|ref|NP_594082.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Rrp41 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|21759394|sp|O42872.1|RRP41_SCHPO RecName: Full=Exosome complex component ski6; AltName:
Full=Ribosomal RNA-processing protein 41
gi|2706461|emb|CAA15919.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Rrp41 (predicted)
[Schizosaccharomyces pombe]
Length = 242
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 29 FSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKK 85
F ++ LR D R + + R R G S +GSA+ E GNTKV+ V GP E K
Sbjct: 4 FEILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSK 63
Query: 86 AMMYSNIGRLNCNV-SYTTFATPIRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVF 143
A + N+ S++T R + + L E I E +P++ + V+
Sbjct: 64 ARADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVY 123
Query: 144 ALVLESGG 151
VL+ G
Sbjct: 124 LHVLQDDG 131
>gi|315051732|ref|XP_003175240.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
gi|311340555|gb|EFQ99757.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
Length = 278
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 11/126 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-L 95
LR D R +++ R + ++SGS+Y GNT V+ +V GP E K++ G +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 96 NCNVSYTTFATPIRGQ-------GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFAL 145
N V+ FA R + G D + + +++L A + I +P++T+ +
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELANLLRDAFQPHIHAHLYPRSTISIHVS 133
Query: 146 VLESGG 151
VL S G
Sbjct: 134 VLSSDG 139
>gi|448509267|ref|XP_003866101.1| hypothetical protein CORT_0A02710 [Candida orthopsilosis Co 90-125]
gi|380350439|emb|CCG20661.1| hypothetical protein CORT_0A02710 [Candida orthopsilosis Co 90-125]
Length = 297
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 35/127 (27%)
Query: 45 HQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPRESKKAMM--------------- 88
+Q P F + G + +++GSAY E +T +I VSVFGPR + + +
Sbjct: 42 NQVPPFFLKHGLITNSNGSAYLEINDTTIIQVSVFGPRPIRGSFIDKASISVETKFLPHV 101
Query: 89 ---YSNI---------GRLNCNVS-YTTFATPIRGQGSDHKDFSSMLHKALEGAIILETF 135
S+I GR N S Y T +PI +H+ FSS L L +I+L +
Sbjct: 102 PQPQSDIFNDSNNNSNGRDTFNASGYRTGMSPI-----EHR-FSSYLESCLLPSILLSKY 155
Query: 136 PKTTVDV 142
PK+T+D+
Sbjct: 156 PKSTIDL 162
>gi|156093968|ref|XP_001613022.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148801896|gb|EDL43295.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 271
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R ++R ++ R F + G+ + S + GNTK++ ++GP+ K Y G++
Sbjct: 32 RINNRKNNEIRDMFIKLGSDGYSDASCFYSLGNTKILALIYGPKPDSKNATYDK-GKVFL 90
Query: 98 NVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ SD ++ ++L + + I+L+ +P+ ++++ L++++ G
Sbjct: 91 EIRSLNMNDDGANDESD-ENIKNLLIECVSSVILLDQYPQCSINIKCLIIQNDG 143
>gi|254566183|ref|XP_002490202.1| exosome component [Komagataella pastoris GS115]
gi|238029998|emb|CAY67921.1| exosome component [Komagataella pastoris GS115]
gi|328350600|emb|CCA37000.1| hypothetical protein PP7435_Chr1-0864 [Komagataella pastoris CBS
7435]
Length = 260
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 42 RGFHQCRPA------FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
+ H +P+ F G V + GS Y E NT + VSV+GPR + + + + L
Sbjct: 38 KKLHVSQPSSGDDKIFVDMGLVTNCEGSCYMEIDNTLIQVSVYGPRPIRGSFI--DTATL 95
Query: 96 NCNVSYTTFATPIR----GQGSD-----HKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ + F T + G G + + SS ++ IIL +PK+++D+F V
Sbjct: 96 SVECRFLPFLTESKEFANGNGRNSLTEIEQRLSSFVYSCFVNTIILSKYPKSSIDIFIKV 155
Query: 147 L 147
+
Sbjct: 156 I 156
>gi|440804447|gb|ELR25324.1| exosome complex exonuclease rrp41, putative [Acanthamoeba
castellanii str. Neff]
Length = 205
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 22/120 (18%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
+ LR D R + R + G V+ A GSA GNT+V+ +++GP+E+
Sbjct: 10 EGLRMDGRRPGELRRIEAKMGVVSKADGSALFRQGNTQVLATIYGPKEA----------- 58
Query: 95 LNCNVSYTTFATPIR-GQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
FA+ R + +D K + ++ + E ++ +P++ +D++ VL+S G
Sbjct: 59 --------GFASGERKSKKTDKKTVELGMLIRQTFESVVMTALYPRSQIDIYVQVLQSDG 110
>gi|312372348|gb|EFR20329.1| hypothetical protein AND_20269 [Anopheles darlingi]
Length = 243
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RPD R + RP F G + SA GSA A+ GNT V+ + + KA + N G L
Sbjct: 55 IRPDGRELEELRPTAFSFGVIQSADGSAIAKIGNTTVVCGIKAELAAPKA-VEPNQGYLI 113
Query: 97 CNVSYTTFATP 107
NV + ++P
Sbjct: 114 PNVEISPVSSP 124
>gi|221060204|ref|XP_002260747.1| exosome complex exonuclease rrp41 homolog [Plasmodium knowlesi
strain H]
gi|193810821|emb|CAQ42719.1| exosome complex exonuclease rrp41 homolog,putative [Plasmodium
knowlesi strain H]
Length = 246
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 18/136 (13%)
Query: 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVN---SASGSAYAEFGNTKVIVSVFGPRES 83
P+ + + R D R +CR G N A G A+ E GNTK++ + GP E
Sbjct: 2 PLVEYVNEEGYRLDGRKEDECRLIKINVGNENIFTDADGFAFYEIGNTKLLSYIQGPTEL 61
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIR--------GQGSDHKDFSSMLHKALEGAIILETF 135
KK+ C++ F +P + S + S+ + E I+L+ +
Sbjct: 62 KKS-------EEKCSIKCEVFLSPFNVYEKKKKKTKDSVTNEISAYIRNICENIILLDLY 114
Query: 136 PKTTVDVFALVLESGG 151
+ +++F ++E G
Sbjct: 115 KNSEINIFLYIIERDG 130
>gi|401420330|ref|XP_003874654.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490890|emb|CBZ26154.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 246
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRL 95
LR D R + R G +++ GS G +KV SVFGPRES K + +
Sbjct: 13 LRLDGRRPREARRMDIAFGTLSACDGSCDITLGQSKVCASVFGPRESLHKQEAKHDKALV 72
Query: 96 NCNVSYTTFATPIRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C V+ FA R +D + + + I+L +P + + ++ VL+ G
Sbjct: 73 TCEVAVAAFAGENRRNPQRRSRLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQQDG 132
>gi|336383937|gb|EGO25086.1| exoribonuclease, exosome component 4 [Serpula lacrymans var.
lacrymans S7.9]
Length = 265
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R ++ R SA GS G T V+VSVFGP E++ ++ + LN
Sbjct: 14 RSDGRRQYELRDISIDLSNHGSADGSVTIRQGLTHVLVSVFGPHEARVRSQTLHDRANLN 73
Query: 97 CNVSYTTFATPIRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V+ + F+ R + S D + + ++ + E I +P++ +DVF V++ G
Sbjct: 74 VEVNVSAFSAGERRKRSRADKRLLELAATIRSTFEPVIQTHLYPRSQIDVFVQVIQQDG 132
>gi|357145083|ref|XP_003573518.1| PREDICTED: exosome complex component RRP42-like [Brachypodium
distachyon]
Length = 286
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R Q RP TG + A+GSA G T+VI SV K +++ + G+++
Sbjct: 20 LRADGRTRLQFRPVIVETGVIPQANGSARVRLGATEVIASVKAEL-GKPTVLHPDKGKVS 78
Query: 97 CNVSYTTFATPI-RGQGSDHKDFSSMLHKALEGAII 131
V + A PI G+GS+ D S+ L AL+ ++
Sbjct: 79 IYVDCSPTAAPIFEGRGSE--DLSAELSVALQRCLL 112
>gi|156102006|ref|XP_001616696.1| exosome complex exonuclease rrp41 [Plasmodium vivax Sal-1]
gi|148805570|gb|EDL46969.1| exosome complex exonuclease rrp41, putative [Plasmodium vivax]
Length = 246
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 18/136 (13%)
Query: 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVN---SASGSAYAEFGNTKVIVSVFGPRES 83
P+ + + R D R +CR G N A G A+ E GNTK++ + GP E
Sbjct: 2 PLVEYVNEEGYRLDGRKEDECRLIKINVGNENIFTDADGFAFYEIGNTKLLSYIQGPTEL 61
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIR--------GQGSDHKDFSSMLHKALEGAIILETF 135
KK+ C++ F +P + S + S+ + E I+L+ +
Sbjct: 62 KKS-------EEKCSIKCEVFLSPFNVYEKKKKKTKDSVTNEISAYIRNICENIILLDLY 114
Query: 136 PKTTVDVFALVLESGG 151
+ +++F ++E G
Sbjct: 115 KNSEINIFLYIIERDG 130
>gi|157877098|ref|XP_001686881.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
Friedlin]
gi|68129956|emb|CAJ09264.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
Friedlin]
Length = 246
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRL 95
LR D R + R G +++ GS G +KV VFGPRES K + G +
Sbjct: 13 LRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLV 72
Query: 96 NCNVSYTTFA-----TPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
C V+ FA P R + +D + + + I+L +P + + ++ VL+
Sbjct: 73 TCEVAVAAFAGENRRNPQR-RSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQQD 131
Query: 151 G 151
G
Sbjct: 132 G 132
>gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
gi|223544318|gb|EEF45839.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
Length = 211
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D+D R D R +Q RP +N A GSA G+TKV+ +V+GP+ K N
Sbjct: 2 DID--RDDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLAAVYGPKPGTKK--NENP 57
Query: 93 GRLNCNVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ V + P GQ G K++ +L + L+ +L P TT V V+ G
Sbjct: 58 EKACIEVIW----KPKTGQIGKVEKEYEMILKRTLQTICVLTINPNTTTSVIVQVVHDDG 113
>gi|449303838|gb|EMC99845.1| hypothetical protein BAUCODRAFT_352759 [Baudoinia compniacensis
UAMH 10762]
Length = 253
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGR 94
LR D R +++ R +S+ GSAY E GNTK++ +V GP+E + S+ +
Sbjct: 13 LRLDGRRWNELRRLHASLSVQSSSDGSAYLEQGNTKILATVSGPQEPVRRTGRDGSSEAK 72
Query: 95 LNCNVSYTTFA---TPIRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ V+ T F+ R +G ++ + +A +G ++ +P + V+V VL
Sbjct: 73 IEVEVNVTPFSGTDRKRRAKGEKRVQELQLTVARAFQGVVLGHLYPHSVVEVRLHVLSQD 132
Query: 151 G 151
G
Sbjct: 133 G 133
>gi|398024542|ref|XP_003865432.1| exosome complex exonuclease rrp41, putative [Leishmania donovani]
gi|322503669|emb|CBZ38755.1| exosome complex exonuclease rrp41, putative [Leishmania donovani]
Length = 246
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRL 95
LR D R + R G +++ GS G +KV VFGPRES K + G +
Sbjct: 13 LRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLV 72
Query: 96 NCNVSYTTFA-----TPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
C V+ FA P R + +D + + + I+L +P + + ++ VL+
Sbjct: 73 TCEVAVAAFAGENRRNPQR-RSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQKD 131
Query: 151 G 151
G
Sbjct: 132 G 132
>gi|296081851|emb|CBI20856.3| unnamed protein product [Vitis vinifera]
Length = 243
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP +N A GSA G+TKV+ +V+GP+ K N +
Sbjct: 5 RDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKK--NENPEKACI 62
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V + P GQ G K++ +L + L+ +L P TT + V+ G
Sbjct: 63 EVVW----KPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDG 113
>gi|1749490|dbj|BAA13803.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 242
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKKAMMYSNIG 93
LR D R + + R R G S +GSA+ E GNTKV+ V GP E KA
Sbjct: 12 LRNDGRRWDEMRNFQCRFGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFV 71
Query: 94 RLNCNV-SYTTFATPIRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVFALVLESGG 151
+ N+ S++T R + + L E I E +P++ + V+ VL+ G
Sbjct: 72 NVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDDG 131
>gi|167393565|ref|XP_001740629.1| exosome complex exonuclease RRP41 [Entamoeba dispar SAW760]
gi|165895202|gb|EDR22949.1| exosome complex exonuclease RRP41, putative [Entamoeba dispar
SAW760]
Length = 238
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + R +N++ GSA GNT V VFGP E ++ L
Sbjct: 10 RLDGRRTTEMRKCEMEINFLNTSDGSARVRMGNTIVEAVVFGPLEGRRR--NREGAELMV 67
Query: 98 NVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ S TFAT R + + + + +L + E II + P+T +D+ +++ G
Sbjct: 68 SYSQATFATRKRREQMHDRTMIETAELLKQMYEQVIITKLLPETMIDLRVQIMQDDG 124
>gi|367014877|ref|XP_003681938.1| hypothetical protein TDEL_0E04840 [Torulaspora delbrueckii]
gi|359749599|emb|CCE92727.1| hypothetical protein TDEL_0E04840 [Torulaspora delbrueckii]
Length = 246
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
LR D R +++ R T + ++A GS+Y E GN KVI V GP+E S ++ + +
Sbjct: 12 LRLDGRRWNELRRFECSINTHS-HAADGSSYLEQGNNKVITLVKGPQEPSSRSQVDTAKA 70
Query: 94 RLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
L +V+ T F+ R + S HK + + L + ++L +P+T +++ VL
Sbjct: 71 LLRISVNITKFSKTERSKTS-HKNERRVLEMQTALVRTFNKNVMLNVYPRTLINIEVHVL 129
Query: 148 ESGG 151
+ G
Sbjct: 130 QQDG 133
>gi|225429944|ref|XP_002281273.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Vitis
vinifera]
Length = 245
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP +N A GSA G+TKV+ +V+GP+ K N +
Sbjct: 7 RDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKK--NENPEKACI 64
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V + P GQ G K++ +L + L+ +L P TT + V+ G
Sbjct: 65 EVVW----KPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDG 115
>gi|344305201|gb|EGW35433.1| hypothetical protein SPAPADRAFT_58653 [Spathaspora passalidarum
NRRL Y-27907]
Length = 242
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R + +SA GS+Y E GNTK+I V GP E + K+ + +
Sbjct: 9 LRIDGRRWNELRRFECKINTHPHSADGSSYVEQGNTKIICMVRGPMEPAMKSQVNATSST 68
Query: 95 LNCNVSYTTFATPIRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ NVS F+T R + S D + + + L + I+ +P+T + V VL
Sbjct: 69 VEVNVSLANFSTFERKKRSKTDKRITELKTTLERTFNECIMGHLYPRTLISVTVQVLAQD 128
Query: 151 G 151
G
Sbjct: 129 G 129
>gi|212543511|ref|XP_002151910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
gi|210066817|gb|EEA20910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
Length = 283
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R +++ R + ++SGS+Y GNT ++ +V GP E+ A + ++
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCTVHGPHETSGAGSSATEAVVD 73
Query: 97 CNVSYTTFA---TPIRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+V+ FA R GSD + S+ L A + + +P +T+ V VL S G
Sbjct: 74 VDVNIAGFAGVDRKRRAGGSDRQSTQLSTALKSAFQSHLHTSLYPHSTITVQVSVLSSDG 133
>gi|324512760|gb|ADY45272.1| Exosome complex exonuclease MTR3 [Ascaris suum]
Length = 202
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQ 111
R G ++ GSA+ E G TKV+ ++ GP+E K+M + + S + G
Sbjct: 1 MRCGVFDTRKGSAFIEMGATKVVCTIDGPKEPSKSM--------DTDCSEGVINVQVVGV 52
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S ++ AL I LE K VDV VLE G
Sbjct: 53 AG----LSHVIESALRAIIALEHLSKMQVDVEVTVLEDDG 88
>gi|388511449|gb|AFK43786.1| unknown [Lotus japonicus]
Length = 243
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G TKV +V+GP+ K N + +
Sbjct: 5 RADGRSPNQLRPLACSRSVLHRAHGSASWAQGETKVFAAVYGPKAGTKK--NENPEKASI 62
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V++ P GQ G K + +L + LE I +P TT V V+ G
Sbjct: 63 EVTW----KPNTGQIGQVEKGYEMILKRTLESICIRSIYPNTTTSVIVQVVHDDG 113
>gi|124360770|gb|ABD33427.2| Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3
exoribonuclease [Medicago truncatula]
Length = 241
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R +Q RP ++ A GSA G TKV+ +V+GP+ K
Sbjct: 5 RPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPE------ 58
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
S P G G +++ +L K LE I +P TT V +
Sbjct: 59 KASIEVIWKPNTGHVGQADREYEMILKKTLESICIRTIYPNTTTSVIVV 107
>gi|58260288|ref|XP_567554.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134116266|ref|XP_773087.1| hypothetical protein CNBJ0820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255708|gb|EAL18440.1| hypothetical protein CNBJ0820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229604|gb|AAW46037.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 268
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSY 101
R + RP F +TG ++ A GS Y E G K+ SV+GPR G LN V +
Sbjct: 37 RTDQESRPIFLKTGLISQAHGSGYIEAGGVKIACSVYGPRPKPPPYSPQ--GTLNLEVKF 94
Query: 102 TTFAT-PIRGQGSDHKDF--SSMLHKALEGAIILETFPKTTVDVFALVLES 149
FA+ P R D + S++L + L + L PK+++DV+ LVLES
Sbjct: 95 APFASDPRRAPLRDTEPLPLSNLLTQLLLPTLHLHLLPKSSIDVYLLVLES 145
>gi|256070058|ref|XP_002571366.1| ribonuclease pH related [Schistosoma mansoni]
Length = 238
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 33 DVDWLRPDSR--GFHQCRPAFFRTGAVNSAS-GSAYAEFGNTKVIVSVFGPRESKKAMMY 89
D+++ P+++ +C P F + N + GSAY E G KV SV GP E ++
Sbjct: 13 DLEYFLPENKVEKAEKCPPDIFFSLETNPITDGSAYIEVGEIKVSCSVNGPTEMRQD--- 69
Query: 90 SNIGRLNCNVSYTTFAT--PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
+L + + +F + P Q S K S +L A+E +++L FP+ ++ +L
Sbjct: 70 ---SQLVAVLKFASFLSWLPKDVQASIEKKLSRLLLSAIEPSVMLHQFPRGKYEIVTNIL 126
Query: 148 E 148
+
Sbjct: 127 D 127
>gi|255082324|ref|XP_002504148.1| predicted protein [Micromonas sp. RCC299]
gi|226519416|gb|ACO65406.1| predicted protein [Micromonas sp. RCC299]
Length = 261
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-AMMYSNI 92
++ LR D R + R A+ + GSA E GNTKV+ +V GP E ++ + +
Sbjct: 6 LEGLRLDGRRPKETRRMRCELTALPGSDGSAVFELGNTKVLAAVHGPHECRRPSERLEDR 65
Query: 93 GRLNCNVSYTTFAT----PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ C VS F+T + S+ + + +E + E ++ +DV VL+
Sbjct: 66 LLVKCEVSMAAFSTGERRRRTKGDRRTNELSTFVRRCIETCVSAELLARSQLDVSIQVLQ 125
Query: 149 SGG 151
+ G
Sbjct: 126 ADG 128
>gi|325182492|emb|CCA16947.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 251
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R ++ R G ++ A GS+ FG+T V+V+V+GP ++K I R N
Sbjct: 5 LRDDGRNCNELRQISSEQGTLHRADGSSNLTFGDTTVLVAVYGPGQAK-------IAR-N 56
Query: 97 CNVSYTTFATPIR-GQG---SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V +R QG + K+ ++ + E I + FP+T + + ++E G
Sbjct: 57 ELVDKAAIDVCVRLNQGIAAAKEKEMELIVRRLYEPIIQRQEFPRTVISIVIQIIEDAG 115
>gi|326477645|gb|EGE01655.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton equinum CBS 127.97]
Length = 302
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-L 95
LR D R +++ R + ++SGS+Y GNT V+ +V GP E K++ G +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 96 NCNVSYTTFATPIRGQ-------GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFAL 145
N V+ FA R + G D + + ++ L A + I +P++T+ V
Sbjct: 74 NVVVNLAGFANVDRKKKSTTGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 146 VLESGG 151
VL S G
Sbjct: 134 VLSSDG 139
>gi|403418005|emb|CCM04705.1| predicted protein [Fibroporia radiculosa]
Length = 280
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 18/146 (12%)
Query: 21 TRKTRPPIFS--GSDVDWL-----RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV 73
+R+T I GS V+ L R D R ++ R +A GSA G T+V
Sbjct: 4 SRRTERQILKVMGSRVEILNDGGYRSDGRRQYELRDITIDLSQQGTADGSALMTHGLTQV 63
Query: 74 IVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK-------DFSSMLHKA 125
+ +VFGPRE++ ++ + +N V+ + F+T G+ + ++ +
Sbjct: 64 LATVFGPREARVRSQTLHDRAVINVEVNVSPFST---GERRRRGRADRRVLELAATIKST 120
Query: 126 LEGAIILETFPKTTVDVFALVLESGG 151
E + +P++ +D+F VL+ G
Sbjct: 121 FEPVVQTNLYPRSQIDIFLHVLQQDG 146
>gi|397652060|ref|YP_006492641.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus
COM1]
gi|393189651|gb|AFN04349.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus
COM1]
Length = 277
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS------N 91
R D RGF RP G + A GSA + GNT+V+V + KA + N
Sbjct: 24 RIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGI-------KATLGEPFPDTPN 76
Query: 92 IGRLNCNVSYTTFATP 107
+G + NV A+P
Sbjct: 77 MGVMTTNVELVPLASP 92
>gi|327296349|ref|XP_003232869.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
gi|326465180|gb|EGD90633.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
Length = 302
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-L 95
LR D R +++ R + ++SGS+Y GNT V+ +V GP E K++ G +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 96 NCNVSYTTFATPIRGQ-------GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFAL 145
N V+ FA R + G D + + ++ L A + I +P++T+ V
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTITVHVS 133
Query: 146 VLESGG 151
VL S G
Sbjct: 134 VLSSDG 139
>gi|256070060|ref|XP_002571367.1| ribonuclease pH related [Schistosoma mansoni]
Length = 239
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 33 DVDWLRPDSR---GFHQCRPAFFRTGAVNSAS-GSAYAEFGNTKVIVSVFGPRESKKAMM 88
D+++ P+++ +C P F + N + GSAY E G KV SV GP E ++
Sbjct: 13 DLEYFLPENKVEKKAEKCPPDIFFSLETNPITDGSAYIEVGEIKVSCSVNGPTEMRQD-- 70
Query: 89 YSNIGRLNCNVSYTTFAT--PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
+L + + +F + P Q S K S +L A+E +++L FP+ ++ +
Sbjct: 71 ----SQLVAVLKFASFLSWLPKDVQASIEKKLSRLLLSAIEPSVMLHQFPRGKYEIVTNI 126
Query: 147 LE 148
L+
Sbjct: 127 LD 128
>gi|18977939|ref|NP_579296.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus DSM
3638]
gi|29336823|sp|Q8U0M0.1|ECX2_PYRFU RecName: Full=Probable exosome complex exonuclease 2
gi|18893709|gb|AAL81691.1| hypothetical protein PF1567 [Pyrococcus furiosus DSM 3638]
Length = 277
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS------N 91
R D RGF RP G + A GSA + GNT+V+V + KA + N
Sbjct: 24 RIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGI-------KATLGEPFPDTPN 76
Query: 92 IGRLNCNVSYTTFATP 107
+G + NV A+P
Sbjct: 77 MGVMTTNVELVPLASP 92
>gi|367005682|ref|XP_003687573.1| hypothetical protein TPHA_0J03200 [Tetrapisispora phaffii CBS 4417]
gi|357525877|emb|CCE65139.1| hypothetical protein TPHA_0J03200 [Tetrapisispora phaffii CBS 4417]
Length = 246
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
LR D R +++ R T A ++A GS+Y E GN K+I V GP+E S ++ S
Sbjct: 12 LRLDGRRWNEVRRFECSINTHA-HAADGSSYLEQGNNKIITLVKGPKEPSLRSQANSLKA 70
Query: 94 RLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
++ +V+ T F+ R S HK + + L + E I+L +P+T + + +L
Sbjct: 71 TMDVSVNITRFSKFERSAIS-HKNERRVLEIQTALLRTFEKNIMLHLYPRTQISIQVHIL 129
Query: 148 ESGG 151
+ G
Sbjct: 130 QQDG 133
>gi|170577726|ref|XP_001894115.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
gi|158599437|gb|EDP37044.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
Length = 306
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D RG RP +TG + + +GSA + G+T +++ V S +Y N RLN
Sbjct: 21 LRADGRGPLDYRPIIVQTGVLATTNGSARVQIGSTDLLIGVKAELISVDTAVYRN--RLN 78
Query: 97 CNVSYTTFATPI-RGQGSDHKDFSSMLHKALEGA 129
V + ATP+ G+G + +F+ L AL+ A
Sbjct: 79 FFVDCSANATPLFAGRGGE--EFADELSAALDAA 110
>gi|321263017|ref|XP_003196227.1| hypothetical Protein CGB_I3550C [Cryptococcus gattii WM276]
gi|317462702|gb|ADV24440.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 268
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSY 101
R + RP F +TG ++ A GS Y E G K+ SV+GPR G LN V +
Sbjct: 37 RTDQESRPIFLKTGLISQAHGSGYIEAGGVKIACSVYGPRPKPPPYSPQ--GTLNLEVKF 94
Query: 102 TTFAT-PIRGQGSDHKDF--SSMLHKALEGAIILETFPKTTVDVFALVLES 149
FA+ P R D + S++L + L + L PK+++DV+ LVLES
Sbjct: 95 APFASDPRRAPLRDTEPLPLSNLLTQLLLPTLHLHLLPKSSIDVYLLVLES 145
>gi|405122610|gb|AFR97376.1| hypothetical protein CNAG_04839 [Cryptococcus neoformans var.
grubii H99]
Length = 268
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSY 101
R + RP F +TG ++ A GS Y E G K+ SV+GPR G LN V +
Sbjct: 37 RTDQESRPIFLKTGLISQAHGSGYIEAGGVKIACSVYGPRPKPPPYSPQ--GTLNLEVKF 94
Query: 102 TTFAT-PIRGQGSDHKDF--SSMLHKALEGAIILETFPKTTVDVFALVLES 149
FA+ P R D + S++L + L + L PK+++DV+ LVLES
Sbjct: 95 APFASDPRRAPLRDTEPLPLSNLLTQLLLPTLHLHLLPKSSIDVYLLVLES 145
>gi|217073740|gb|ACJ85230.1| unknown [Medicago truncatula]
Length = 286
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R RP TG + A+GSA G T+VI SV K ++M + G+++
Sbjct: 20 LRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAEL-GKPSLMQPDKGKVS 78
Query: 97 CNVSYTTFATP-IRGQGSD--HKDFSSMLHKALEGA 129
+ ++ A P G+G+D D S+ L + L GA
Sbjct: 79 IYIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGA 114
>gi|388511583|gb|AFK43853.1| unknown [Medicago truncatula]
Length = 286
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R RP TG + A+GSA G T+VI SV K ++M + G+++
Sbjct: 20 LRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAEL-GKPSLMQPDKGKVS 78
Query: 97 CNVSYTTFATP-IRGQGSD--HKDFSSMLHKALEGA 129
+ ++ A P G+G+D D S+ L + L GA
Sbjct: 79 IYIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGA 114
>gi|67471870|ref|XP_651847.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56468626|gb|EAL46457.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|449702785|gb|EMD43355.1| 3' exoribonuclease family protein [Entamoeba histolytica KU27]
Length = 238
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + R +++A GSA GNT V VFGP E ++ N
Sbjct: 10 RLDGRRTTEMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEGRR----RNREGAEL 65
Query: 98 NVSYT--TFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
VSY+ TFAT R + + + + +L + E II + P+T +D+ V++ G
Sbjct: 66 MVSYSQATFATRKRREQMHDRTMIETAELLKQMYEQIIITKLLPETMIDLRVQVMQDDG 124
>gi|407038338|gb|EKE39071.1| 3' exoribonuclease family protein [Entamoeba nuttalli P19]
Length = 238
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + R +++A GSA GNT V VFGP E ++ N
Sbjct: 10 RLDGRRTTEMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEGRR----RNREGAEL 65
Query: 98 NVSYT--TFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
VSY+ TFAT R + + + + +L + E II + P+T +D+ V++ G
Sbjct: 66 MVSYSQATFATRKRREQMHDRTMIETAELLKQMYEQIIITKLLPETMIDLRVQVMQDDG 124
>gi|388514143|gb|AFK45133.1| unknown [Medicago truncatula]
Length = 286
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R RP TG + A+GSA G T+VI SV K ++M + G+++
Sbjct: 20 LRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAEL-GKPSLMQPDKGKVS 78
Query: 97 CNVSYTTFATP-IRGQGSD--HKDFSSMLHKALEGA 129
+ ++ A P G+G+D D S+ L + L GA
Sbjct: 79 IYIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGA 114
>gi|357518287|ref|XP_003629432.1| Exosome complex exonuclease RRP42 [Medicago truncatula]
gi|355523454|gb|AET03908.1| Exosome complex exonuclease RRP42 [Medicago truncatula]
Length = 286
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R RP TG + A+GSA G T+VI SV K ++M + G+++
Sbjct: 20 LRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAEL-GKPSLMQPDKGKVS 78
Query: 97 CNVSYTTFATP-IRGQGSD--HKDFSSMLHKALEGA 129
+ ++ A P G+G+D D S+ L + L GA
Sbjct: 79 IYIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGA 114
>gi|241958204|ref|XP_002421821.1| exosome complex exonuclease, putative; mRNA transport regulator,
putative [Candida dubliniensis CD36]
gi|223645166|emb|CAX39765.1| exosome complex exonuclease, putative [Candida dubliniensis CD36]
Length = 293
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 24/117 (20%)
Query: 49 PAFF-RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCN--------- 98
P+FF + +++A+GSAY E NT + VS+FGPR + + + ++C
Sbjct: 38 PSFFLKHSIIDNANGSAYLEINNTIIEVSIFGPRPIRGSFIDRASVSIDCKFLPHIIPPM 97
Query: 99 --------VSYTTFATPIRG-----QGSDHKDFSSMLHKALEGAIILETFPKTTVDV 142
+ T RG +HK SS L + ++ILE +PK+T+D+
Sbjct: 98 TNIFNNDSNNNNNNNTISRGYRTGMNNIEHK-LSSYLETCVLSSLILEKYPKSTIDI 153
>gi|217073628|gb|ACJ85174.1| unknown [Medicago truncatula]
Length = 286
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R RP TG + A+GSA G T+VI SV K ++M + G+++
Sbjct: 20 LRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAEL-GKPSLMQPDKGKVS 78
Query: 97 CNVSYTTFATP-IRGQGSD--HKDFSSMLHKALEGA 129
+ ++ A P G+G+D D S+ L + L GA
Sbjct: 79 IYIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGA 114
>gi|357122793|ref|XP_003563099.1| PREDICTED: exosome complex component RRP42-like [Brachypodium
distachyon]
Length = 286
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R Q RP TG + A+GSA G T+VI SV K +++ + G+++
Sbjct: 20 LRADGRTKLQFRPVTVETGVIPQANGSARVRLGATEVIASVKAEL-GKPTVLHPDKGKVS 78
Query: 97 CNVSYTTFATPI-RGQGSDHKDFSSMLHKALEGAII 131
V + A PI G+GS+ D S+ L AL+ ++
Sbjct: 79 IYVDCSPTAAPIFEGRGSE--DLSAELSVALQRCLL 112
>gi|167537032|ref|XP_001750186.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771348|gb|EDQ85016.1| predicted protein [Monosiga brevicollis MX1]
Length = 1336
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 43 GFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSY 101
G + R + G A GSAY E GNTKV+ + GP +S + S ++C Y
Sbjct: 36 GDDELRSVKAKLGVFEQADGSAYVEQGNTKVLAIINGPHDSDARGPNASGHLTVSCEFIY 95
Query: 102 TTFATPIRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+F+T R S D K + + + + LE ++ + ++T+++ VL++ G
Sbjct: 96 ASFSTDQRRARSRLDRKLAEQGTRIARTLESVVMGQLLSRSTINLNVQVLQADG 149
>gi|224141741|ref|XP_002324223.1| predicted protein [Populus trichocarpa]
gi|222865657|gb|EEF02788.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP ++ A GSA G+TKV+ +V+GP+ K N +
Sbjct: 5 RDDGRSPSQLRPLSCARNVLHRAHGSASWSQGDTKVLAAVYGPKAGTKK--NENPEKACI 62
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V + P GQ G K+F +L + L+ IL P TT + V+ G
Sbjct: 63 EVIW----KPKTGQIGKLEKEFEMILKRTLQSICILTLNPNTTTSIIVQVVNDDG 113
>gi|427416381|ref|ZP_18906564.1| RNAse PH [Leptolyngbya sp. PCC 7375]
gi|425759094|gb|EKU99946.1| RNAse PH [Leptolyngbya sp. PCC 7375]
Length = 240
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R ++ RP F A+GS A GNT+V+ +V + + + S G L
Sbjct: 3 WQRPDGRQPNELRPVKFERRFTRYAAGSVLAHCGNTQVLCTVSASEDVPRWLKDSGQGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
AT R + K + ++ ++L A+ LE + T+ V A V+++
Sbjct: 63 TAEYRMLPSATHTRTRRELMKLSGRTQEIQRLIGRSLRAALDLEALGEITLTVDADVIQA 122
Query: 150 GG 151
G
Sbjct: 123 DG 124
>gi|168045848|ref|XP_001775388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673333|gb|EDQ59858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 256
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP G + A GSA NT V+ +V+GP+ + AM N R
Sbjct: 19 RADGRSASQLRPLSLSRGLLTRAHGSATWSQENTTVLAAVYGPKPA--AMKKENAERAII 76
Query: 98 NVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V + + GS KD ++ ++LE I+ P T + V V+ G
Sbjct: 77 EVVWRAKSGL---SGSYEKDAEVVVRRSLEYIILTALHPNTAISVILQVINDDG 127
>gi|350295872|gb|EGZ76849.1| ribosomal protein S5 domain 2-like protein [Neurospora tetrasperma
FGSC 2509]
Length = 273
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 26/136 (19%)
Query: 36 WLRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE----------- 82
LR D R +++ R A RT A +A GS+Y E G+TKV+ V GP E
Sbjct: 12 LLRVDGRRWNELRRIHAQIRTQA--AADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGG 69
Query: 83 ------SKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDH-KDFSSMLHKALEGAIILETF 135
SK A + NI +++ RG+G H + S + +AL ++ F
Sbjct: 70 GGGGGQSKNAEVAVNI----VIAGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLF 125
Query: 136 PKTTVDVFALVLESGG 151
P +T+++ VL G
Sbjct: 126 PHSTINISLHVLSQDG 141
>gi|221114702|ref|XP_002157039.1| PREDICTED: exosome complex component RRP42-like [Hydra
magnipapillata]
Length = 279
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 19/137 (13%)
Query: 28 IFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFG----PRES 83
I SG + D+ R D R + R +TG +++ SGSA + T V++ V P S
Sbjct: 14 IVSGIEEDF-RTDGRSCNDYRAITVQTGIISNTSGSAQVKLAGTNVLIGVKAEISEPLPS 72
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPI-RGQGSDHKDF--SSMLHKALEGAIILETF---PK 137
K N+G++ V + A+PI G+G D F S+ L GAI LE P
Sbjct: 73 K-----PNLGKVEFFVDCSANASPIFEGRGGDELAFELSAALQNTFSGAIDLEKLCIIPG 127
Query: 138 TTVDVF---ALVLESGG 151
+ ALVLE GG
Sbjct: 128 KACWILYIDALVLECGG 144
>gi|336275813|ref|XP_003352660.1| hypothetical protein SMAC_01493 [Sordaria macrospora k-hell]
gi|380094550|emb|CCC07930.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 273
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 26/136 (19%)
Query: 36 WLRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE----------- 82
LR D R +++ R A RT A +A GS+Y E G+TKV+ V GP E
Sbjct: 12 LLRVDGRRWNELRRIHAQIRTQA--AADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGG 69
Query: 83 ------SKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDH-KDFSSMLHKALEGAIILETF 135
SK A + NI +++ RG+G H + S + +AL ++ F
Sbjct: 70 GGGGGQSKNAEVAVNI----VIAGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLF 125
Query: 136 PKTTVDVFALVLESGG 151
P +T+++ VL G
Sbjct: 126 PHSTINISLHVLSQDG 141
>gi|255722417|ref|XP_002546143.1| hypothetical protein CTRG_00925 [Candida tropicalis MYA-3404]
gi|240136632|gb|EER36185.1| hypothetical protein CTRG_00925 [Candida tropicalis MYA-3404]
Length = 288
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 51 FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP--- 107
F + + +A+GSAY E NT + VS+FGPR + + + + C + +P
Sbjct: 39 FLKHSVITNANGSAYLEINNTIIEVSIFGPRPIRGSFIDRATLSIEC--KFLPHISPQPQ 96
Query: 108 --IRGQGS----------DHKDFSSMLHKALEGAIILETFPKTTVDV 142
I GS +HK S+ L ++LE +PK+T+D+
Sbjct: 97 SNIFNDGSKNIRTGMTNVEHK-LSNYLESCFLPCLVLEKYPKSTIDI 142
>gi|452844097|gb|EME46031.1| hypothetical protein DOTSEDRAFT_86692 [Dothistroma septosporum
NZE10]
Length = 251
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMM--YSNIGR 94
LR D R +++ R + +A GS+Y E GNTKVI +V GPR++++ S
Sbjct: 13 LRTDGRRWNELRRIHGQMSTQAAADGSSYFEMGNTKVICTVHGPRQARQGGSGGQSREAA 72
Query: 95 LNCNVSYTTFATPIRG-QGSDHKDFSSM---LHKALEGAIILETFPKTTVDVFALVLESG 150
++ + F+ R +G + K M + A + ++P +T+ + VL
Sbjct: 73 IDVEIGIAGFSGMDRKRRGKNDKRVQEMQYTISSAFASTVFTTSYPHSTITIVLHVLSQD 132
Query: 151 G 151
G
Sbjct: 133 G 133
>gi|337283875|ref|YP_004623349.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus yayanosii
CH1]
gi|334899809|gb|AEH24077.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus yayanosii
CH1]
Length = 268
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS------N 91
R D RGF RP + G + A GSA + GNT+V+V + K + N
Sbjct: 21 RIDDRGFEDYRPIEIQVGVIEKAEGSALVKLGNTQVLVGI-------KLDLGEPFPDTPN 73
Query: 92 IGRLNCNVSYTTFATP 107
+G + NV A+P
Sbjct: 74 MGVMTTNVELVPLASP 89
>gi|422294508|gb|EKU21808.1| exosome complex component RRP41 [Nannochloropsis gaditana CCMP526]
Length = 249
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R ++ R G ++A GSA + G T+V+ V GP E + S +
Sbjct: 14 LRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTR---RSEVQHDK 70
Query: 97 CNVSYTTFATPIRGQGSDHK---DFSSM-----LHKALEGAIILETFPKTTVDVFALVLE 148
C + + TP G + D +S+ L + E A++ +P+T VD+ VL+
Sbjct: 71 CIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQ 130
Query: 149 SGG 151
G
Sbjct: 131 GDG 133
>gi|403169909|ref|XP_003329338.2| hypothetical protein PGTG_10390 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168474|gb|EFP84919.2| hypothetical protein PGTG_10390 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 291
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR 81
R D R RP + G ++ A+GS Y E GN+KVI +V+GP+
Sbjct: 61 RADGRIHSDSRPICIKVGVISQANGSCYIESGNSKVICAVYGPK 104
>gi|389585705|dbj|GAB68435.1| exosome complex exonuclease rrp41 [Plasmodium cynomolgi strain B]
Length = 231
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 17/128 (13%)
Query: 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVN---SASGSAYAEFGNTKVIVSVFGPRES 83
P+ + + R D R +CR G N A G A+ E GNTK++ + GP E
Sbjct: 2 PLVEYVNEEGYRIDGRKEDECRLIKISVGNENIFTDADGFAFYELGNTKLLSYIQGPTEL 61
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
KK+ C++ T + S + S+ + E I+L+ + + +++F
Sbjct: 62 KKS-------EEKCSIKCET-------KDSVTNEISAYIRNICENIILLDLYKNSEINIF 107
Query: 144 ALVLESGG 151
++E G
Sbjct: 108 LYIIERDG 115
>gi|284989916|ref|YP_003408470.1| ribonuclease PH [Geodermatophilus obscurus DSM 43160]
gi|284063161|gb|ADB74099.1| ribonuclease PH [Geodermatophilus obscurus DSM 43160]
Length = 250
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R Q RP G ++ A GS EFG T+V+ + + S +G +
Sbjct: 9 RPDGRAADQLRPVTITRGWLDHAEGSVLVEFGRTRVLCAASVTEGVPRWRKGSGLGWVTA 68
Query: 98 NVSYTTFATPIRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT RG G + S ++ ++L AI L + +V + VL++
Sbjct: 69 EYAMLPRATHTRGDRESVKGRIGGRTHEISRLIGRSLRAAIDLGALGENSVAIDCDVLQA 128
Query: 150 GG 151
G
Sbjct: 129 DG 130
>gi|340059335|emb|CCC53718.1| putative exosome-associated protein 4 [Trypanosoma vivax Y486]
Length = 238
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 57 VNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFAT----PIRGQG 112
V SA E GNT+VI +V P++ GR+ C V + A+ P+R
Sbjct: 23 VGHCHSSACVELGNTRVICAVHHPQQLIDEYRGER-GRIGCTVRRSARASKGALPLRSGV 81
Query: 113 SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ KD + L +E +ILE P+ V++ +L G
Sbjct: 82 TPEKDMALALEGIIEQVVILEKIPQLLVELSVEILADDG 120
>gi|400596874|gb|EJP64630.1| 3' exoribonuclease family protein [Beauveria bassiana ARSEF 2860]
Length = 270
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 36 WLRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMM---YS 90
LR D R +++ R A RT ++A GS+Y E G+TKV+ V GP E ++ +
Sbjct: 12 LLRVDGRRWNELRRLHALIRTQ--DAADGSSYLEMGHTKVMCVVSGPSEQQQNQKRGGQA 69
Query: 91 NIGR----LNCNVSYTTFATPIRGQ-GSDHKDFSSM---LHKALEGAIILETFPKTTVDV 142
N R +N N+ F++ R + G + K M + KAL + FP +++ +
Sbjct: 70 NASRDGATVNVNIIIAGFSSVDRKKRGRNDKRIQEMEITIAKALSSNLHTHIFPHSSISI 129
Query: 143 FALVLESGG 151
VL G
Sbjct: 130 SLHVLSQDG 138
>gi|358332153|dbj|GAA50858.1| exosome complex component RRP41 [Clonorchis sinensis]
Length = 477
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 38 RPDSRGFHQCRPAF--FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGR 94
R D R ++ R F F+TG ++ G GNTKV+ SV GPR + K M +
Sbjct: 231 RIDGRRTNELRRVFCQFQTG---NSDGIVLLHQGNTKVMASVVGPRPCRFKGDMKPDEAT 287
Query: 95 LNCNVSYTTFAT------PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L C + F++ + + DF++ + + + E +P + +D+F VL+
Sbjct: 288 LVCKYNKPPFSSTSGERRKVSNRDRSTSDFAATIEEIFSCVVRKEKYPMSQIDIFLEVLQ 347
Query: 149 SGG 151
S G
Sbjct: 348 SDG 350
>gi|452982879|gb|EME82637.1| hypothetical protein MYCFIDRAFT_80273 [Pseudocercospora fijiensis
CIRAD86]
Length = 251
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R +++ R + +A GS+Y E GNTK+I +V GPR+ + GR
Sbjct: 13 LRVDGRRWNELRRIHGQMSTQAAADGSSYFEMGNTKIICTVLGPRQQTRGG-----GRDQ 67
Query: 97 CNVSYTTFATPIRG-QGSDHK----------DFSSMLHKALEGAIILETFPKTTVDVFAL 145
+ I G G D K + + A I+ +P++T+ +
Sbjct: 68 SRSASIEVEIGIAGFSGMDRKKRSRTDKRTQEMQYTISSAFASTILTSLYPQSTISIMLH 127
Query: 146 VLESGG 151
VL G
Sbjct: 128 VLSQDG 133
>gi|284161629|ref|YP_003400252.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631]
gi|284011626|gb|ADB57579.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631]
Length = 259
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
D R D R F + RP +TG + A GSAY + GNT+V+ V
Sbjct: 20 DGERIDGRAFDEIRPIEIKTGLIKKAEGSAYVKLGNTQVVAGV 62
>gi|376005800|ref|ZP_09783198.1| Ribonuclease PH [Arthrospira sp. PCC 8005]
gi|375325822|emb|CCE18951.1| Ribonuclease PH [Arthrospira sp. PCC 8005]
Length = 241
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R HQ RP F A+ S A+ GNT+V+ +V + + + G L
Sbjct: 3 WQRPDGRQPHQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
ATP R K + ++ ++L A+ L+ + TV V A VL++
Sbjct: 63 TAEYRMLPGATPQRQPRELMKLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 122
>gi|299534733|ref|ZP_07048063.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
fusiformis ZC1]
gi|424737096|ref|ZP_18165552.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
fusiformis ZB2]
gi|298729821|gb|EFI70366.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
fusiformis ZC1]
gi|422948928|gb|EKU43304.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
fusiformis ZB2]
Length = 704
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 18/130 (13%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPR 81
D +RPD R + RP TG + GS G T+ I+ G
Sbjct: 312 DKIRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRGQTQALSICTLGALGDVQIIDGLGVE 371
Query: 82 ESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
ESK+ M + N + + + PIRG G ++ +ALE I E+ T+
Sbjct: 372 ESKRFMHHYNFPQFSVGET-----GPIRGPGRREIGHGALGERALEAVIPDESIFPYTIR 426
Query: 142 VFALVLESGG 151
+ VLES G
Sbjct: 427 CVSEVLESNG 436
>gi|209523065|ref|ZP_03271622.1| ribonuclease PH [Arthrospira maxima CS-328]
gi|423062494|ref|ZP_17051284.1| ribonuclease PH [Arthrospira platensis C1]
gi|209496652|gb|EDZ96950.1| ribonuclease PH [Arthrospira maxima CS-328]
gi|406716402|gb|EKD11553.1| ribonuclease PH [Arthrospira platensis C1]
Length = 242
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R HQ RP F A+ S A+ GNT+V+ +V + + + G L
Sbjct: 4 WQRPDGRQPHQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWL 63
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
ATP R K + ++ ++L A+ L+ + TV V A VL++
Sbjct: 64 TAEYRMLPGATPQRQPRELMKLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 123
>gi|47210410|emb|CAF91678.1| unnamed protein product [Tetraodon nigroviridis]
Length = 260
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK 85
RP F R G + A GSAY E G TK++ V+GPRE+++
Sbjct: 46 RPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETER 83
>gi|336463800|gb|EGO52040.1| hypothetical protein NEUTE1DRAFT_89939 [Neurospora tetrasperma FGSC
2508]
Length = 273
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 26/136 (19%)
Query: 36 WLRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE----------- 82
LR D R +++ R A RT A +A GS+Y E G+TKV+ + GP E
Sbjct: 12 LLRVDGRRWNELRRIHAQIRTQA--AADGSSYLEMGHTKVMCVINGPSEPGPRRGATSGG 69
Query: 83 ------SKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDH-KDFSSMLHKALEGAIILETF 135
SK A + NI +++ RG+G H + S + +AL ++ F
Sbjct: 70 GGGGGQSKNAEVAVNI----VIAGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLF 125
Query: 136 PKTTVDVFALVLESGG 151
P +T+++ VL G
Sbjct: 126 PHSTINISLHVLSQDG 141
>gi|312076508|ref|XP_003140893.1| hypothetical protein LOAG_05308 [Loa loa]
gi|307763947|gb|EFO23181.1| hypothetical protein LOAG_05308 [Loa loa]
Length = 264
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA--------MMYSNIGRLNCNV 99
R +TGA++ G+ Y EFG+TK+I SV GP+E K+ +Y + ++
Sbjct: 35 RSIVMQTGALHDQKGTVYVEFGSTKIICSVDGPKEITKSADVNPTEGQVYVFLKNISTEG 94
Query: 100 SYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + + + + + AL + LE F K +DV VL G
Sbjct: 95 NAVSGSNSSSVSNKEINGTRNAVESALRSIVCLELFCKAQIDVEITVLNDDG 146
>gi|169827176|ref|YP_001697334.1| polynucleotide phosphorylase [Lysinibacillus sphaericus C3-41]
gi|226702661|sp|B1HR13.1|PNP_LYSSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|168991664|gb|ACA39204.1| Polyribonucleotide nucleotidyltransferase [Lysinibacillus
sphaericus C3-41]
Length = 704
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 18/130 (13%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPR 81
D +RPD R + RP TG + GS G T+ I+ G
Sbjct: 312 DKIRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRGQTQALSICTLGALGDVQIIDGLGVE 371
Query: 82 ESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
ESK+ M + N + + + PIRG G ++ +ALE I E+ T+
Sbjct: 372 ESKRFMHHYNFPQFSVGET-----GPIRGPGRREIGHGALGERALEAVIPDESVFPYTIR 426
Query: 142 VFALVLESGG 151
+ VLES G
Sbjct: 427 CVSEVLESNG 436
>gi|219130014|ref|XP_002185170.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403349|gb|EEC43302.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 140
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R RP G +++A GSA + G+T+V+ +V GP ++ + +++
Sbjct: 3 RADGRLASTLRPLSCELGTLHNADGSALWKSGSTQVLAAVHGPVAPRQPQHETQKAKISI 62
Query: 98 NVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ T + +++ + + KAL ++ E +P++ + + +L + G
Sbjct: 63 IIKSGTTVNTL------EREWEAFITKALTACLVTEQYPRSVIQIVLQILSADG 110
>gi|110638186|ref|YP_678395.1| polynucleotide phosphorylase/polyadenylase [Cytophaga hutchinsonii
ATCC 33406]
gi|123058787|sp|Q11U61.1|PNP_CYTH3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110280867|gb|ABG59053.1| polyribonucleotide nucleotidyltransferase [Cytophaga hutchinsonii
ATCC 33406]
Length = 717
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV-FGPRESKKAM---MYSNIG 93
R D R Q RP + G + SA GSA G T+ + +V FG R ++ + M+S
Sbjct: 322 RLDGRSLEQIRPIWSEVGYLPSAHGSAIFTRGETQSLTTVTFGTRLDEQMIDSAMFSGNN 381
Query: 94 RLNCNVSYTTFAT----PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+L + ++ F+T P RG G ++ ++A++ + E T+ + + +LES
Sbjct: 382 KLMLHYNFPGFSTGEVKPNRGPGRREVGHGNLAYRAIKKVMPPEIENPYTIRIVSDILES 441
Query: 150 GG 151
G
Sbjct: 442 NG 443
>gi|223940166|ref|ZP_03632028.1| ribonuclease PH [bacterium Ellin514]
gi|223891183|gb|EEF57682.1| ribonuclease PH [bacterium Ellin514]
Length = 255
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI--GR 94
LR D R Q RP F+ A+GS E+GNT+VI V + M N+ G
Sbjct: 17 LRTDGRLPGQLRPLRFQNHIAPYATGSTLVEWGNTRVICGVTVEESVPRWMKEQNVIGGW 76
Query: 95 LNCNVSYTTFATPIRGQGSDHK--------DFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ S ++T R Q K + ++ +A+ AI LE T+ V V
Sbjct: 77 ITAEYSMLPYSTLQRKQRDISKGKIDGRSQEIQRLIGRAMRAAIDLEKIGSRTIWVDCDV 136
Query: 147 LESGG 151
L++ G
Sbjct: 137 LQADG 141
>gi|332711140|ref|ZP_08431074.1| RNAse PH [Moorea producens 3L]
gi|332350122|gb|EGJ29728.1| RNAse PH [Moorea producens 3L]
Length = 234
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD+R Q RP F A GS A G TKV+ +V E + + + G L
Sbjct: 3 WQRPDNRQPDQLRPILFEREFTRYAPGSVLAHCGETKVLCTVTVQEEVPRFLKDTGSGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
ATP R + K + ++ ++L A+ L+ + T+ V A V+++
Sbjct: 63 TAEYRMLPGATPERQRRELLKLSGRTQEIQRLIGRSLRAAVDLKALGERTLTVDADVIQA 122
>gi|434392384|ref|YP_007127331.1| Ribonuclease PH [Gloeocapsa sp. PCC 7428]
gi|428264225|gb|AFZ30171.1| Ribonuclease PH [Gloeocapsa sp. PCC 7428]
Length = 244
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG 93
+ W RPD R HQ RP F G A+ S A+ G+T+V+ +V + + S G
Sbjct: 5 MSWQRPDHRQSHQMRPHSFELGFTRFAAASVLAKCGDTQVLCNVSIQPGVPRFLTDSGRG 64
Query: 94 RLNCNVSYTTFATPIRGQ------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
L ATP R + ++ ++ ++L A+ E + TV V A VL
Sbjct: 65 WLTAEYRMLPGATPQRQEREFMRLSGRTQEIQRLIGRSLRAALDFEALGERTVMVDADVL 124
Query: 148 ES 149
++
Sbjct: 125 QA 126
>gi|154346012|ref|XP_001568943.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066285|emb|CAM44076.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|449310620|gb|AGE92537.1| exosome complex exonuclease RRP41 [Leishmania braziliensis]
Length = 246
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES--KKAMMYSNIGR 94
LR D R + R G +++ GS G +KV S+FGPRES K+ + +
Sbjct: 13 LRLDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKVCASIFGPRESLHKQEAKHDKV-L 71
Query: 95 LNCNVSYTTFATPIR----GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C V+ FA R + +D + + + I+L +P + + ++ VL+
Sbjct: 72 VTCEVAVAAFAGESRRNPQRRSKLSEDIDAAVVQVARSVILLSQYPNSQIHIYIEVLQQD 131
Query: 151 G 151
G
Sbjct: 132 G 132
>gi|154419828|ref|XP_001582930.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
gi|121917168|gb|EAY21944.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
Length = 241
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R ++ R + G + +GS++ + G T+VI +FGPR+++ N +
Sbjct: 10 LRIDGRPPNEMRLVEAKIGTIPGCTGSSHFKIGQTEVIAQIFGPRDNRSG---DNAAEIR 66
Query: 97 CNVSYTTFA-------TPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
Y FA T + +G ++ ++ + E AI E FP + + + V++
Sbjct: 67 VTFEYADFAKVPHASDTSMTRRG---RESEVIMKRTFEEAIKRELFPHSKILIAITVIQD 123
Query: 150 GG 151
G
Sbjct: 124 DG 125
>gi|298710388|emb|CBJ25452.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 230
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG 93
++ R D R +Q RP G +N A GSA GNT V+ +V+GP +K M + G
Sbjct: 1 MEETRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEG 60
Query: 94 RLNCNVSYTTFATPIRG-QGSDHKDFSSMLHKALEGAIILETFPKT 138
+VS+ P G S + ++L ++LE ++ +P+T
Sbjct: 61 -ATLDVSF----KPESGITSSADAESEALLRRSLEEVVLRSRYPRT 101
>gi|449310644|gb|AGE92549.1| exosome complex exonuclease RRP41 [Leishmania braziliensis]
Length = 246
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES--KKAMMYSNIGR 94
LR D R + R G +++ GS G +KV S+FGPRES K+ + +
Sbjct: 13 LRLDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKVCASIFGPRESLHKQEAKHDKV-L 71
Query: 95 LNCNVSYTTFATPIR----GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C V+ FA R + +D + + + I+L +P + + ++ VL+
Sbjct: 72 VTCEVAVAAFAGESRRNPQRRSRLSEDIDAAVVQVARSVILLSQYPNSQIHIYIEVLQQD 131
Query: 151 G 151
G
Sbjct: 132 G 132
>gi|146104020|ref|XP_001469709.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
JPCM5]
gi|134074079|emb|CAM72821.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
JPCM5]
Length = 246
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRL 95
LR D R + R +++ GS G +KV VFGPRES K + G +
Sbjct: 13 LRLDGRRPLEARRMDIAFSTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLV 72
Query: 96 NCNVSYTTFATPIR----GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C V+ FA R + +D + + + I+L +P + + ++ VL+ G
Sbjct: 73 TCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQKDG 132
>gi|68490993|ref|XP_710691.1| potential exosome component Mtr3p [Candida albicans SC5314]
gi|46431926|gb|EAK91443.1| potential exosome component Mtr3p [Candida albicans SC5314]
Length = 293
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 36/125 (28%)
Query: 49 PAFF-RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
P+FF + +++A+GSAY E NT + VS+FGPR + + I R + +V
Sbjct: 39 PSFFLKHSIIDNANGSAYLEINNTIIEVSIFGPRPIRGSF----IDRASVSVDCKFLPHI 94
Query: 108 IRGQGS------------------------------DHKDFSSMLHKALEGAIILETFPK 137
I+ GS +HK SS L + ++ILE +PK
Sbjct: 95 IQPMGSIFNDTTTSGVGGGGGISSSNRGYRTGMNNIEHK-LSSYLETCVLSSLILEKYPK 153
Query: 138 TTVDV 142
+T+D+
Sbjct: 154 STIDI 158
>gi|390595539|gb|EIN04944.1| hypothetical protein PUNSTDRAFT_116225 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 261
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 10/131 (7%)
Query: 31 GSDVDWL-----RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK- 84
GS V+ L R D R ++ R A G A G T+V VSVFGPRE++
Sbjct: 2 GSRVEILNDGGYRSDGRRQYELRDINIDMTHQGPADGFATVSHGLTEVSVSVFGPREARL 61
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTV 140
++ + +N V+ F+T R + + +F + + E I +P++ +
Sbjct: 62 RSQTIHDRANINVEVNIAPFSTGDRRRRNRGDKRILEFGATIKSTFEPVIQTSLYPRSQI 121
Query: 141 DVFALVLESGG 151
D+ LVL+ G
Sbjct: 122 DIHVLVLQQDG 132
>gi|428301403|ref|YP_007139709.1| RNAse PH [Calothrix sp. PCC 6303]
gi|428237947|gb|AFZ03737.1| RNAse PH [Calothrix sp. PCC 6303]
Length = 247
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R +Q RP F+T A GS A+ G T+V+ +V + K + S G L
Sbjct: 3 WQRPDGRQPYQLRPVNFQTDFTCFAPGSVLAQCGETRVLCTVSIAKGVPKFLEGSGKGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
AT R Q D K + ++ ++L I + + T V A VL++
Sbjct: 63 TAEYRMLPSATLQRKQREDLKLSGRTQEIQRLIGRSLRSVIDFDALGENTFTVDADVLQA 122
>gi|332157778|ref|YP_004423057.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
gi|331033241|gb|AEC51053.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
Length = 274
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS------N 91
R D RGF RP G + A GSA + GNT+V+V + K + N
Sbjct: 24 RIDDRGFEDYRPISIEVGIIEKAEGSALVKIGNTQVLVGI-------KTTLGEPFPDTPN 76
Query: 92 IGRLNCNVSYTTFATP 107
+G + NV A+P
Sbjct: 77 MGVMTTNVELVPLASP 92
>gi|238879722|gb|EEQ43360.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 260
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 35/123 (28%)
Query: 49 PAFF-RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC---------- 97
P+FF + +++A+GSAY E NT + VS+FGPR + + + ++C
Sbjct: 39 PSFFLKHSIIDNANGSAYLEINNTIIEVSIFGPRPIRGSFIDRASVSVDCKFLPHIIQPM 98
Query: 98 ------------------NVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTT 139
N Y T I +HK SS L + ++ILE +PK+T
Sbjct: 99 ASIFNDTTTSGGGGISSSNRGYRTGMNNI-----EHK-LSSYLETCVLSSLILEKYPKST 152
Query: 140 VDV 142
+D+
Sbjct: 153 IDI 155
>gi|123427505|ref|XP_001307267.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
gi|121888886|gb|EAX94337.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
Length = 203
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 53 RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI-GRLNCNVSYTTFATPIRGQ 111
R G + A+GSAY E +TKV +V+GP E + S + G ++C I
Sbjct: 8 RLGDIKGAAGSAYVELNDTKVFAAVYGPMEPENQQQDSALTGIVDC---------IIEDA 58
Query: 112 GSDHKDFSSMLHKALE---GAIILETFPKTTVDVFALVLESG 150
+ K++ ++ HK L I + + KT + + +LE G
Sbjct: 59 WQNTKEYDALCHKLLHTFSSTIFHKKYFKTLIRISITILEKG 100
>gi|68065138|ref|XP_674553.1| exosome complex exonuclease [Plasmodium berghei strain ANKA]
gi|56493201|emb|CAH99095.1| exosome complex exonuclease rrp41, putative [Plasmodium berghei]
Length = 246
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Query: 38 RPDSRGFHQCRPAFFRTG---AVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
R D R ++ R G N A G A+ E GNTK++ + GP E KK
Sbjct: 13 RLDGRKCNEYRLIKINMGNQNIFNDADGFAFYEIGNTKILSYIQGPTELKKT-------D 65
Query: 95 LNCNVSYTTFATPI------RGQGSDH--KDFSSMLHKALEGAIILETFPKTTVDVFALV 146
C++ F +P + + D+ + S+ + E I+L+ + + +++F +
Sbjct: 66 EKCSIKCDVFLSPFNVYDKRKKKTKDNITNEISAYIRNICENIILLDLYKNSEINIFLYI 125
Query: 147 LESGG 151
+E G
Sbjct: 126 IERDG 130
>gi|77361698|ref|YP_341273.1| ribonuclease PH [Pseudoalteromonas haloplanktis TAC125]
gi|123588968|sp|Q3IJI0.1|RNPH_PSEHT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|76876609|emb|CAI87831.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas
haloplanktis TAC125]
Length = 237
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R +Q RP F A GS EFGNTKV+ + + M G +N
Sbjct: 1 MRPSERTANQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60
Query: 97 CNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ +AL A+ L+ + T+ + V++
Sbjct: 61 AEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|320581308|gb|EFW95529.1| exosome component Ski6p, putative [Ogataea parapolymorpha DL-1]
Length = 246
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRESKKAM-----MYS 90
LR D R +++ R + N+A GS+Y + GN+KV+ V GP E + +
Sbjct: 12 LRVDGRRWNELRRFECQINTHPNAADGSSYVQQGNSKVLCLVKGPMEHGANLAAGTKLDP 71
Query: 91 NIGRLNCNVSYTTFATPIRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALV 146
N L+ N++Y FA+ R + + ++ S +L + I+L+ + +T +D+ V
Sbjct: 72 NGPVLSLNINYPPFASNERKKRPKNDRRLQEISIILKRCFMKTIVLKNYSRTAIDINLTV 131
Query: 147 LESGG 151
L G
Sbjct: 132 LAMDG 136
>gi|46135695|ref|XP_389539.1| hypothetical protein FG09363.1 [Gibberella zeae PH-1]
Length = 238
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE----SKKAMMYSN 91
LR D R +++ R + ++A GS+Y E G+TKV+ V GP E +
Sbjct: 12 LLRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRD 71
Query: 92 IGRLNCNVSYTTFATPIRGQ-GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
+ +N NV F++ R + G + K + + + AL + FP +++ + VL
Sbjct: 72 MAAINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANALSSNLHTHLFPNSSISISLHVL 131
Query: 148 ESGG 151
G
Sbjct: 132 SQDG 135
>gi|291295492|ref|YP_003506890.1| ribonuclease PH [Meiothermus ruber DSM 1279]
gi|290470451|gb|ADD27870.1| ribonuclease PH [Meiothermus ruber DSM 1279]
Length = 238
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVF----GPRESKKAMMYSNIG 93
R D R + RP R G V+ A GSA E G+TKV+V+V PR + G
Sbjct: 3 RKDGRAAQELRPLTLRMGYVHYAEGSALVELGHTKVLVNVSLTDGVPRH-----VSGREG 57
Query: 94 RLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
L + +T R + K + L +A A+ L P TV + A V+
Sbjct: 58 WLMAEYNLLPRSTKERKERERQKISGRTAEIQRFLGRAFRAALDLSLLPNKTVVIDADVI 117
Query: 148 ESGG 151
++ G
Sbjct: 118 QADG 121
>gi|449019724|dbj|BAM83126.1| similar to ribonuclease PH [Cyanidioschyzon merolae strain 10D]
Length = 294
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
+D +RPD R RP G + A GS+ G T+V+VSV+GP +S+
Sbjct: 1 MDSVRPDGRSSEAFRPLRVALGVLERADGSSLLSLGETRVLVSVYGPLQSE 51
>gi|226485759|emb|CAX75299.1| Exosome complex exonuclease MTR3 [Schistosoma japonicum]
gi|226485761|emb|CAX75300.1| Exosome complex exonuclease MTR3 [Schistosoma japonicum]
Length = 240
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 46 QCRPAFFRTGAVNSAS-GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTF 104
+C P F + N + GSAY E G KV SV GP E ++ +L + + F
Sbjct: 29 KCPPDIFFSLETNPITDGSAYLEMGEIKVACSVNGPTEMRQD------SQLVTMLKFAPF 82
Query: 105 AT--PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ P Q S + S +L A+E AI+L FP+ ++ +L+
Sbjct: 83 LSWLPKDIQASMERKLSRLLLTAIEPAIMLHHFPRGKYEIVTNILD 128
>gi|226485757|emb|CAX75298.1| Exosome complex exonuclease MTR3 [Schistosoma japonicum]
gi|226485763|emb|CAX75301.1| Exosome complex exonuclease MTR3 [Schistosoma japonicum]
Length = 240
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSAS-GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+ + +C P F + N + GSAY E G KV SV GP E ++ +L
Sbjct: 21 KESKKTVEKCPPDIFFSLETNPITDGSAYLEMGEIKVACSVNGPTEMRQD------SQLV 74
Query: 97 CNVSYTTFAT--PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ + F + P Q S + S +L A+E AI+L FP+ ++ +L+
Sbjct: 75 TMLKFAPFLSWLPKDIQASMERKLSRLLLTAIEPAIMLHHFPRGKYEIVTNILD 128
>gi|340354948|ref|ZP_08677644.1| polyribonucleotide nucleotidyltransferase [Sporosarcina
newyorkensis 2681]
gi|339622962|gb|EGQ27473.1| polyribonucleotide nucleotidyltransferase [Sporosarcina
newyorkensis 2681]
Length = 707
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 56/131 (42%), Gaps = 18/131 (13%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGP 80
VD +RPD R + RP TG + A GS+ G T+V I+ G
Sbjct: 312 VDKVRPDGRALDEIRPLSSETGLLQRAHGSSLFTRGQTQVLSVCTLGALGEVQIIDGLGL 371
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTV 140
ESK+ M + N N +V T PIRG G ++ +AL + E T+
Sbjct: 372 DESKRFMHHYNFP--NFSVGET---GPIRGPGRREIGHGALGERALLPVLPNEDEFPYTM 426
Query: 141 DVFALVLESGG 151
+ A VLES G
Sbjct: 427 RLVAEVLESNG 437
>gi|56757493|gb|AAW26913.1| SJCHGC05910 protein [Schistosoma japonicum]
Length = 240
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 46 QCRPAFFRTGAVNSAS-GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTF 104
+C P F + N + GSAY E G KV SV GP E ++ +L + + F
Sbjct: 29 KCPPDIFFSLETNPITDGSAYLEMGEIKVACSVNGPTEMRQD------SQLVTMLKFAPF 82
Query: 105 AT--PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ P Q S + S +L A+E AI+L FP+ ++ +L+
Sbjct: 83 LSWLPKDIQASMERKLSRLLLTAIEPAIMLHHFPRGKYEIVTNILD 128
>gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indica Group]
Length = 238
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + G
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRK------GENPE 58
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S P+ GQ G K++ L + L+ +L P TT V V+ + G
Sbjct: 59 KASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDG 113
>gi|408395559|gb|EKJ74738.1| hypothetical protein FPSE_05073 [Fusarium pseudograminearum CS3096]
Length = 266
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE----SKKAMMYSN 91
LR D R +++ R + ++A GS+Y E G+TKV+ V GP E +
Sbjct: 12 LLRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRD 71
Query: 92 IGRLNCNVSYTTFATPIRGQ-GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
+ +N NV F++ R + G + K + + + AL + FP +++ + VL
Sbjct: 72 MAAINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANALSSNLHTHLFPNSSISISLHVL 131
Query: 148 ESGG 151
G
Sbjct: 132 SQDG 135
>gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group]
gi|75243278|sp|Q84T68.2|EXOS5_ORYSJ RecName: Full=Exosome complex exonuclease RRP46 homolog; AltName:
Full=Exosome component 5; AltName: Full=Ribosomal
RNA-processing protein 46; Short=oRrp46
gi|57222448|gb|AAO66540.2| putative exosome component [Oryza sativa Japonica Group]
gi|108712165|gb|ABF99960.1| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|113550407|dbj|BAF13850.1| Os03g0854200 [Oryza sativa Japonica Group]
gi|215697262|dbj|BAG91256.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 238
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + G
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRK------GENPE 58
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S P+ GQ G K++ L + L+ +L P TT V V+ + G
Sbjct: 59 KASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDG 113
>gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46
gi|284793944|pdb|3HKM|B Chain B, Crystal Structure Of Rice(Oryza Sativa) Rrp46
gi|284793945|pdb|3HKM|C Chain C, Crystal Structure Of Rice(Oryza Sativa) Rrp46
Length = 246
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + G
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRK------GENPE 58
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S P+ GQ G K++ L + L+ +L P TT V V+ + G
Sbjct: 59 KASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDG 113
>gi|402224488|gb|EJU04550.1| ribosomal protein S5 domain 2-like protein [Dacryopinax sp. DJM-731
SS1]
Length = 257
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVN-----SASGSAYAEFGNTKVIVSVFGPRESK-KAMMYS 90
LR D R RP R+ + SA GSA G T+V V+GPRE+K +A
Sbjct: 12 LRSDGR-----RPLELRSFSAELTTHPSADGSASVSHGLTQVTACVYGPREAKNRAQTMH 66
Query: 91 NIGRLNCNVSYTTFATPIRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ +N V +A +R Q + D + +F++ + E I +P++ +D+ V
Sbjct: 67 DRALVNIEVEVAPWAGEVRRQRTKGDRRTAEFAASVKATFEPVIQTTLYPRSEIDIHIHV 126
Query: 147 LESGG 151
L+ G
Sbjct: 127 LQLDG 131
>gi|320584037|gb|EFW98249.1| exosome component [Ogataea parapolymorpha DL-1]
Length = 239
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 45 HQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTF 104
H F TG + + SGS+Y E T +I S++GPR + +++ L + + F
Sbjct: 28 HIDSKIFLETGLIQNCSGSSYLENDKTIIITSIYGPRPN-FTRSFNDQASLKVGIELSKF 86
Query: 105 ATPIRGQGSDHKD-----------FSSMLHKALEGAIILETFPKTTVDVFALVL 147
P+ + K+ S + + I+L+ +PK+++++F V+
Sbjct: 87 -LPLDNLKDNRKNITPDKERLIASLESFMLSNFQSLILLQNYPKSSIEIFVQVV 139
>gi|15231368|ref|NP_190207.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314404|ref|NP_001030817.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314427|ref|NP_001030818.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314448|ref|NP_001030819.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|145332769|ref|NP_001078250.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|334185757|ref|NP_001190019.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|7799009|emb|CAB90948.1| putative protein [Arabidopsis thaliana]
gi|27808554|gb|AAO24557.1| At3g46210 [Arabidopsis thaliana]
gi|110736314|dbj|BAF00127.1| hypothetical protein [Arabidopsis thaliana]
gi|222423954|dbj|BAH19939.1| AT3G46210 [Arabidopsis thaliana]
gi|222424492|dbj|BAH20201.1| AT3G46210 [Arabidopsis thaliana]
gi|332644608|gb|AEE78129.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644609|gb|AEE78130.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644610|gb|AEE78131.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644611|gb|AEE78132.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644612|gb|AEE78133.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644613|gb|AEE78134.1| exosome complex component RRP46 [Arabidopsis thaliana]
Length = 239
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ GSA G+TKV+ +V+GP+ K +
Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 58
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ P GQ G K++ +L + ++ +L P TT V V+ G
Sbjct: 59 KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDG 113
>gi|308378909|ref|ZP_07484288.2| ribonuclease rphA [Mycobacterium tuberculosis SUMu010]
gi|308358854|gb|EFP47705.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu010]
Length = 296
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 8/158 (5%)
Query: 2 AAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSAS 61
+A+P ++TA+ T K+ P S V R D R H+ RP G + +
Sbjct: 5 SARPRPSSTARCTRWYATRRSKSGEPARSRVGVVSKREDGRLDHELRPVIITRGFTENPA 64
Query: 62 GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFAT-------PIRGQGSD 114
GS EFG+TKV+ + + + +G L + AT +RG+ S
Sbjct: 65 GSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSG 124
Query: 115 H-KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
++ S ++ ++L I L + T+ + VL++ G
Sbjct: 125 RTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADG 162
>gi|354544990|emb|CCE41715.1| hypothetical protein CPAR2_802650 [Candida parapsilosis]
Length = 300
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 36/135 (26%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPRESKKAMM-------- 88
P + +Q P F + G + +++GSAY E NT +I VSVFGPR + + +
Sbjct: 33 EPATASSNQVPPFFLKHGLITNSNGSAYLEIDNTTIIQVSVFGPRPIRGSFIDKASISVE 92
Query: 89 --------------------YSNIGRLNCNVS-YTTFATPIRGQGSDHKDFSSMLHKALE 127
SN R N S Y T T I +H+ FSS L L
Sbjct: 93 TKFLPHVQQPQADIFNFNNSSSNNNRDTFNASGYRTGMTAI-----EHR-FSSYLETCLL 146
Query: 128 GAIILETFPKTTVDV 142
+I+L +PK+T+D+
Sbjct: 147 PSILLSKYPKSTIDL 161
>gi|403298457|ref|XP_003940036.1| PREDICTED: exosome complex component MTR3 [Saimiri boliviensis
boliviensis]
Length = 143
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
RP + R G ++ A GSAY E G TKV+ +V GPR+++
Sbjct: 37 RPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAE 73
>gi|433463506|ref|ZP_20421059.1| polynucleotide phosphorylase/polyadenylase [Halobacillus sp.
BAB-2008]
gi|432187506|gb|ELK44791.1| polynucleotide phosphorylase/polyadenylase [Halobacillus sp.
BAB-2008]
Length = 707
Score = 43.1 bits (100), Expect = 0.033, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGP------------R 81
D +RPD RG + RP R G + GS G T+ + V+ G
Sbjct: 313 DKIRPDGRGVDEIRPLTSRVGLLPRTHGSGLFTRGQTQALSVATLGALGDVQILDGLDLE 372
Query: 82 ESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
ESK+ M + N + + + PIRG G ++ +ALE I E T+
Sbjct: 373 ESKRFMHHYNFPKFSVGET-----GPIRGPGRREIGHGALGERALEKVIPSEKDFPYTIR 427
Query: 142 VFALVLESGG 151
+ + VLES G
Sbjct: 428 LVSEVLESNG 437
>gi|428308090|ref|YP_007144915.1| RNAse PH [Crinalium epipsammum PCC 9333]
gi|428249625|gb|AFZ15405.1| RNAse PH [Crinalium epipsammum PCC 9333]
Length = 239
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R + Q RP F ++ S G+T+V+ SV K + S G L
Sbjct: 3 WQRPDHRQYDQLRPISFEKEFTRFSTSSVLTRCGDTQVLCSVTIQNTIPKFLQGSGKGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
ATP R + K + ++ ++L AI L+ + T+ V A VL++
Sbjct: 63 TAEYRMLPSATPQRQEREFMKLAGRTQEIQRLIGRSLRAAIDLQALGERTIIVDADVLQA 122
>gi|169610820|ref|XP_001798828.1| hypothetical protein SNOG_08517 [Phaeosphaeria nodorum SN15]
gi|160702162|gb|EAT83685.2| hypothetical protein SNOG_08517 [Phaeosphaeria nodorum SN15]
Length = 281
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 54 TGAVNSASGSAYAEF---------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCN 98
T + SASGSAY E K+ SV GP+ ++ +S L
Sbjct: 7 TSIIPSASGSAYLEIPSSSSPTSSTLVSPTSTLKITASVQGPKPLPRSAPFSPSLLLTTT 66
Query: 99 VSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
V + FAT R + S +D L AL G II E +PK+ V+V +LE
Sbjct: 67 VKFAPFATRHRRGYIRDSTERDLGVHLESALRGVIIGERWPKSGVEVVVTILE 119
>gi|121710390|ref|XP_001272811.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
gi|119400961|gb|EAW11385.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
Length = 269
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-------AMMY 89
LR D R +++ R + ++SGS++ GNT ++ SV GP E K+ A
Sbjct: 14 LRLDGRRWNELRLLSAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 90 SNIGRLNCNVS-YTTFATPIRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
I ++ NV+ + R GSD + +++L A + + +P +T+ + V
Sbjct: 74 GAIVEVDVNVAGFAGVDRKRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 147 LESGG 151
L S G
Sbjct: 134 LSSDG 138
>gi|358059015|dbj|GAA95196.1| hypothetical protein E5Q_01851 [Mixia osmundae IAM 14324]
Length = 290
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 22/131 (16%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVN--SASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
LR DSR + RP + GSA E G T+V VSV GPRE + A N +
Sbjct: 12 LRLDSRRPLEVRPITCTLDVLKGLEIDGSASVEQGLTRVSVSVCGPREPRAARGAGNARQ 71
Query: 95 ----LNCNVSYTTFATPIRGQGSDHK----------DFSSMLHKALEGAIILETFPKTTV 140
+N + TF+ G D + + +S + E I+ + +P+ +
Sbjct: 72 DRVVINVEIQTATFS------GVDRRKRGRNDRRTVEMASSIKNTFEPVIMGQLYPRAQI 125
Query: 141 DVFALVLESGG 151
D++ ++L+ G
Sbjct: 126 DIYVIILQQDG 136
>gi|449310636|gb|AGE92545.1| exosome-associated protein 4 [Leishmania braziliensis]
Length = 221
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
R T + + SA E G T+V+ V P++ + + GR++C V + + A+
Sbjct: 14 RAIHVATNMLANCHSSACVEIGQTRVLCGVRPPQQLVQEYRGTR-GRVSCQV-HRSLASS 71
Query: 108 IRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ S +D + L E A++LE P+ V+V ++ G
Sbjct: 72 LNLDNSSDRDMALALEGVAEQAVVLERIPQLLVEVLIEIVHDDG 115
>gi|209882995|ref|XP_002142931.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209558537|gb|EEA08582.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 250
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 8/123 (6%)
Query: 35 DWLRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
+ R D R F++ R G N + S Y E G TK+I S+ GP + S I
Sbjct: 14 EGFRIDGRRFNEIRRISCKISNGTSNLSDSSVYYEQGQTKLITSICGPIPLLNSSSQSGI 73
Query: 93 GRLNCNVSYTTFATPIRGQGSDHKDF----SSMLHKALEGAIILETFPKTTVDVFALVLE 148
+L+CN + F TP R + + F S ++ + E A I E + K+ + + VLE
Sbjct: 74 -QLHCNFRMSPFCTPDRRKRGKNDRFCTENSLIITRTFESA-ISEIYVKSQIIININVLE 131
Query: 149 SGG 151
+ G
Sbjct: 132 ADG 134
>gi|222626193|gb|EEE60325.1| hypothetical protein OsJ_13416 [Oryza sativa Japonica Group]
Length = 248
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + G
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRK------GENPE 58
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S P+ GQ G K++ L + L+ +L P TT V V+ + G
Sbjct: 59 KASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDG 113
>gi|154346388|ref|XP_001569131.1| putative exosome-associated protein 4 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066473|emb|CAM44266.1| putative exosome-associated protein 4 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|449310614|gb|AGE92534.1| exosome-associated protein 4 [Leishmania braziliensis]
Length = 221
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
R T + + SA E G T+V+ V P++ + + GR++C V + + A+
Sbjct: 14 RAIHVATNMLANCHSSACVEIGQTRVLCGVRPPQQLVQEYRGTR-GRVSCQV-HRSLASS 71
Query: 108 IRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ S +D + L E A++LE P+ V+V ++ G
Sbjct: 72 LNLDNSSDRDMALALEGVAEQAVVLERIPQLLVEVLIEIVHDDG 115
>gi|398409290|ref|XP_003856110.1| hypothetical protein MYCGRDRAFT_65596 [Zymoseptoria tritici IPO323]
gi|339475995|gb|EGP91086.1| hypothetical protein MYCGRDRAFT_65596 [Zymoseptoria tritici IPO323]
Length = 250
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R +++ R + +A GS+Y E GNTKV+ +V GPR+S ++ + +
Sbjct: 13 LRIDGRRWNELRRIQGQMSTQAAADGSSYFEMGNTKVMCTVHGPRQSARSGGGTREATIE 72
Query: 97 CNVSYTTFA-TPIRGQGSDHKDFSSMLH---KALEGAIILETFPKTTVDVFALVLESGG 151
+ F+ T + + K M H A + +P +T+ + VL G
Sbjct: 73 VEIGVAGFSGTERKKRARADKRTQEMQHSISSAFSDTVFTAFYPSSTITIVLHVLSQDG 131
>gi|431908123|gb|ELK11726.1| Exosome complex exonuclease RRP41 [Pteropus alecto]
Length = 287
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 59/162 (36%), Gaps = 48/162 (29%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--------------- 82
R D R + R R G A GSAY E GNTK + V+GP E
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASGRAPGAGGGLGRR 72
Query: 83 -SKKAMMYS----------------------------NIGRLNCNVSYTTFATPIRGQ-- 111
A +Y+ + +NC S TF+T R +
Sbjct: 73 RPAHASVYAAHIPGRFNRSKSQSPRTAIRGSRSRALPDRALVNCQYSSATFSTGERKRRP 132
Query: 112 GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
D K + L + E AI+ + P + +D++ VL++ G
Sbjct: 133 HGDRKSCEMGLQLRQTFEAAILTQLHPCSQIDIYVQVLQADG 174
>gi|392543668|ref|ZP_10290805.1| ribonuclease PH [Pseudoalteromonas piscicida JCM 20779]
gi|409200966|ref|ZP_11229169.1| ribonuclease PH [Pseudoalteromonas flavipulchra JG1]
Length = 237
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP R +Q RP F A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPSERTANQIRPVTFTRNYTMHAEGSVMVEFGNTKVLCTASVEAGVPRFMKGQGKGWIT 60
Query: 90 SNIGRLNCNVSYTTFATPIRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L + RG QG + ++ +AL A+ L+ + T+ + V++
Sbjct: 61 AEYGMLPRSTHTRNNREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|82523945|emb|CAI78667.1| ribonuclease PH [uncultured delta proteobacterium]
Length = 242
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 12/126 (9%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W R R +++ RP + + +GSA EFGNTKVI + E K A N GR
Sbjct: 2 WQRSAGRKYNELRPINITNNFLKTTAGSALVEFGNTKVICA--ATLEDKSAPFLKNTGRG 59
Query: 96 NCNVSYTTF------ATP---IRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
Y+ TP RG+ G + ++ ++L L +F + T+ +
Sbjct: 60 WVTAEYSMLPASTQTRTPRESTRGKVGGRTHEIQRLIGRSLRAVCDLNSFGEKTIYMDCD 119
Query: 146 VLESGG 151
V+++ G
Sbjct: 120 VIQADG 125
>gi|332532804|ref|ZP_08408678.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505]
gi|359435729|ref|ZP_09225910.1| ribonuclease PH [Pseudoalteromonas sp. BSi20652]
gi|359441741|ref|ZP_09231628.1| ribonuclease PH [Pseudoalteromonas sp. BSi20429]
gi|359456485|ref|ZP_09245634.1| ribonuclease PH [Pseudoalteromonas sp. BSi20495]
gi|392536350|ref|ZP_10283487.1| ribonuclease PH [Pseudoalteromonas arctica A 37-1-2]
gi|332037831|gb|EGI74281.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505]
gi|357917620|dbj|GAA62159.1| ribonuclease PH [Pseudoalteromonas sp. BSi20652]
gi|358036409|dbj|GAA67877.1| ribonuclease PH [Pseudoalteromonas sp. BSi20429]
gi|358046473|dbj|GAA81883.1| ribonuclease PH [Pseudoalteromonas sp. BSi20495]
Length = 237
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R +Q RP F A GS EFGNTKV+ + + M G +N
Sbjct: 1 MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60
Query: 97 CNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ +AL A+ L+ + T+ + V++
Sbjct: 61 AEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|359460885|ref|ZP_09249448.1| ribonuclease PH [Acaryochloris sp. CCMEE 5410]
Length = 239
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R Q RP F + A+GS AE G TKV+ +V + + + G L
Sbjct: 3 WQRPDGRQPDQLRPIRFHREYTHFAAGSVLAECGQTKVLCTVSVQPGVPRFLEDTGQGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
ATP R + K + ++ ++L A+ L+ + T+ V A VL++
Sbjct: 63 TAEYRMLPGATPERQRRELMKLSGRTQEIQRLIGRSLRAALDLQALGERTLVVDADVLQA 122
>gi|301095816|ref|XP_002897007.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108436|gb|EEY66488.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 171
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ RP GA+ A GSA G++ V+ +V+GP +++ N +
Sbjct: 8 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARN-WRAENTDKATL 66
Query: 98 NVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+V + + S K++ ++ + ++ ++FP+ + + V+E G
Sbjct: 67 DVCFKLEKGIMT---SKEKEYEQIIRQTFAPVVLTDSFPRAVISIVVQVIEDNG 117
>gi|70932569|ref|XP_737786.1| exosome complex exonuclease rrp41 [Plasmodium chabaudi chabaudi]
gi|56513462|emb|CAH83474.1| exosome complex exonuclease rrp41, putative [Plasmodium chabaudi
chabaudi]
Length = 227
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 18/125 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVN---SASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
R D R + R G N A G A+ E GNTK++ + GP E KK+
Sbjct: 13 RLDGRKCDEYRLIKINMGNQNIFTDADGFAFYEIGNTKILSYIQGPTELKKS-------D 65
Query: 95 LNCNVSYTTFATPIRGQGSDHK--------DFSSMLHKALEGAIILETFPKTTVDVFALV 146
C++ F +P K + S+ + E I+L+ + + +++F +
Sbjct: 66 DKCSIKCDVFLSPFNVYDKRKKKTKDNITNEISAYIRNICENIILLDLYKNSEINIFLYI 125
Query: 147 LESGG 151
+E G
Sbjct: 126 IERDG 130
>gi|296810936|ref|XP_002845806.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
gi|238843194|gb|EEQ32856.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
Length = 298
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 11/126 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-L 95
LR D R +++ R + ++SGS+Y GNT V+ +V GP E K++ G +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTTVLCTVHGPAEGKRSETAGATGAVI 73
Query: 96 NCNVSYTTFATPIRGQGS-------DHK---DFSSMLHKALEGAIILETFPKTTVDVFAL 145
+ V+ FA R + S D + + ++++ A + I +P++T+ +
Sbjct: 74 SVVVNLAGFANVDRKKKSAAGGGGGDRQATTELANLIRDAFQPHIHAHLYPRSTISIHVS 133
Query: 146 VLESGG 151
VL S G
Sbjct: 134 VLSSDG 139
>gi|414072712|ref|ZP_11408639.1| ribonuclease PH [Pseudoalteromonas sp. Bsw20308]
gi|410804873|gb|EKS10911.1| ribonuclease PH [Pseudoalteromonas sp. Bsw20308]
Length = 237
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R +Q RP F A GS EFGNTKV+ + + M G +N
Sbjct: 1 MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60
Query: 97 CNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ +AL A+ L+ + T+ + V++
Sbjct: 61 AEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|410080930|ref|XP_003958045.1| hypothetical protein KAFR_0F03140 [Kazachstania africana CBS 2517]
gi|372464632|emb|CCF58910.1| hypothetical protein KAFR_0F03140 [Kazachstania africana CBS 2517]
Length = 217
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQ 111
+TG +++ +GS+ E T ++ SV+GP+ ++ + + LN + F T
Sbjct: 39 IKTGIISNCNGSSIVENSKTSILCSVYGPKATRTSTFEAR-CELNVILKSDLFET----- 92
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
+ K+ S L LE I L+ +PK +D+F
Sbjct: 93 -NKLKELSYFLISLLESFICLDLYPKAGIDIF 123
>gi|328949911|ref|YP_004367246.1| ribonuclease PH [Marinithermus hydrothermalis DSM 14884]
gi|328450235|gb|AEB11136.1| ribonuclease PH [Marinithermus hydrothermalis DSM 14884]
Length = 240
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D RG + RP A GSA E G T+V+ +V + + G L C
Sbjct: 3 RKDGRGPLEMRPLVITPNYNAFAEGSALVELGQTRVLATVSITDGVPRHVHPRRSGWLMC 62
Query: 98 NVSYTTFATPIRGQ------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S ATP R Q G ++ L +A A+ L+ TV V A VL++ G
Sbjct: 63 EYSLLPRATPTRTQRERFKLGGRTQEVQRFLGRAFRAALDLKALAGKTVIVDADVLQADG 122
>gi|134076396|emb|CAK48214.1| unnamed protein product [Aspergillus niger]
Length = 248
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-------AMMY 89
LR D R +++ R + ++SGS+Y GNT ++ SV GP E ++ A
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSA 73
Query: 90 SNIGRLNCNVS-YTTFATPIRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ ++ NV+ + R GSD + +++L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRVATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 147 LESGG 151
L S G
Sbjct: 134 LSSDG 138
>gi|317029576|ref|XP_001391907.2| exosome complex endonuclease 1 [Aspergillus niger CBS 513.88]
gi|350635872|gb|EHA24233.1| hypothetical protein ASPNIDRAFT_39724 [Aspergillus niger ATCC 1015]
gi|358368844|dbj|GAA85460.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Aspergillus kawachii IFO 4308]
Length = 269
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-------AMMY 89
LR D R +++ R + ++SGS+Y GNT ++ SV GP E ++ A
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSA 73
Query: 90 SNIGRLNCNVS-YTTFATPIRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ ++ NV+ + R GSD + +++L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRVATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 147 LESGG 151
L S G
Sbjct: 134 LSSDG 138
>gi|67526709|ref|XP_661416.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
gi|40740830|gb|EAA60020.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
gi|259481631|tpe|CBF75330.1| TPA: exosome complex endonuclease 1/ribosomal RNA processing
protein, putative (AFU_orthologue; AFUA_2G03740)
[Aspergillus nidulans FGSC A4]
Length = 265
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-------AMMY 89
LR D R +++ R + ++SGS+Y GNT ++ SV GP E ++ A
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTILCSVHGPAEGRRGDATGGSAGSS 73
Query: 90 SNIGRLNCNVS-YTTFATPIRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ ++ N++ + + R GSD + +S L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNIAGFASVDRKRRAGGSDRQSGRIASTLRSAFQSHLHTYLYPHSTISIHVSV 133
Query: 147 LESGG 151
L S G
Sbjct: 134 LSSDG 138
>gi|290992775|ref|XP_002679009.1| predicted protein [Naegleria gruberi]
gi|284092624|gb|EFC46265.1| predicted protein [Naegleria gruberi]
Length = 280
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 37 LRPDSRGF-HQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
LR D R +Q R G + A GS GNT VI SV GP S K +
Sbjct: 6 LRRDQRKTSNQLRDMQVELGVLGKADGSVKFSQGNTTVICSVCGPESSMKE-------KG 58
Query: 96 NCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + F + + K++ ++ + LE I+ +P+T + + V++ G
Sbjct: 59 DQAIIDVMFQPRDKKASEEEKEYELIIRQTLENVILTNIYPRTVITISIQVVQYDG 114
>gi|392408713|ref|YP_006445320.1| RNAse PH [Desulfomonile tiedjei DSM 6799]
gi|390621849|gb|AFM23056.1| RNAse PH [Desulfomonile tiedjei DSM 6799]
Length = 240
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVS 76
++++RPD+R F + RP + G ++ A GSA E G TKVI +
Sbjct: 1 MNYVRPDNRQFDELRPWNIQVGVLDYAEGSALVESGKTKVICA 43
>gi|406865017|gb|EKD18060.1| 3' exoribonuclease family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 257
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 36 WLRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
LR D R +++ R A RT A +A GS+Y E GNTKVI +V GP E K
Sbjct: 12 LLRLDGRRWNELRRLTAQMRTQA--AADGSSYLEMGNTKVICTVAGPSEGK 60
>gi|68490966|ref|XP_710705.1| potential exosome component Mtr3p [Candida albicans SC5314]
gi|46431941|gb|EAK91457.1| potential exosome component Mtr3p [Candida albicans SC5314]
Length = 291
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 36/124 (29%)
Query: 49 PAFF-RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC---------- 97
P+FF + +++A+GSAY E NT + VS+FGPR + + + +C
Sbjct: 39 PSFFLKHSIIDNANGSAYLEINNTIIEVSIFGPRPIRGSFIDRASVSADCKFLPHIIQPM 98
Query: 98 -------------------NVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKT 138
N Y T I +HK SS L + ++ILE +PK+
Sbjct: 99 ASIFNDTTTSGGGGGISSSNRGYRTGMNNI-----EHK-LSSYLETCVLSSLILEKYPKS 152
Query: 139 TVDV 142
T+D+
Sbjct: 153 TIDI 156
>gi|14520827|ref|NP_126302.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus abyssi GE5]
gi|29337009|sp|Q9V118.1|ECX2_PYRAB RecName: Full=Probable exosome complex exonuclease 2
gi|5458043|emb|CAB49533.1| RNAse PH-related exoribonuclease [Pyrococcus abyssi GE5]
gi|380741369|tpe|CCE70003.1| TPA: exosome complex RNA-binding protein Rrp42 [Pyrococcus abyssi
GE5]
Length = 274
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMY-----SNI 92
R D RGF RP G + A GSA + G+T+V+V + K ++ N+
Sbjct: 24 RIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGI------KTSLGEPFPDTPNM 77
Query: 93 GRLNCNVSYTTFATP 107
G + NV A+P
Sbjct: 78 GVMTTNVELVPLASP 92
>gi|297819162|ref|XP_002877464.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
lyrata]
gi|297323302|gb|EFH53723.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
lyrata]
Length = 242
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ GSA G+TKV+ +V+GP+ K +
Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 58
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ P GQ G K++ ++ + ++ +L P TT V V+ G
Sbjct: 59 KACFEVIWKPKTGQIGKVEKEYEMIMKRTIQSICVLTVNPNTTTSVIIQVVHDDG 113
>gi|440293108|gb|ELP86270.1| exosome complex exonuclease RRP41, putative [Entamoeba invadens
IP1]
Length = 238
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + R G SA GSA GNT V V GP E K+ + L
Sbjct: 10 RVDGRRPTEMRKCEMELGFEKSADGSARVRMGNTLVEAVVSGPMEGKRR--NHDSAELKV 67
Query: 98 NVSYTTFATPIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S TFAT R + + + S +L + E ++++ P+T++++ VL+ G
Sbjct: 68 FFSQATFATRRRRERMFDRNMAETSELLKQMYEQVVLVKQLPETSIEIRVQVLQDDG 124
>gi|392309031|ref|ZP_10271565.1| ribonuclease PH [Pseudoalteromonas citrea NCIMB 1889]
Length = 237
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP R +Q RP F A G+ EFGNTKV+ V PR K K +
Sbjct: 1 MRPSERTANQIRPVTFTRNYTIHAEGAVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWIT 60
Query: 90 SNIGRLNCNVSYTTFATPIRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L + RG QG + ++ +AL A+ L+ + T+ + VL+
Sbjct: 61 AEYGMLPRSTHTRNNREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVLQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|170292235|pdb|2PNZ|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
gi|170292237|pdb|2PO0|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
gi|170292240|pdb|2PO1|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
gi|170292242|pdb|2PO2|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
Length = 277
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMY-----SNI 92
R D RGF RP G + A GSA + G+T+V+V + K ++ N+
Sbjct: 27 RIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGI------KTSLGEPFPDTPNM 80
Query: 93 GRLNCNVSYTTFATP 107
G + NV A+P
Sbjct: 81 GVMTTNVELVPLASP 95
>gi|25136928|emb|CAD56698.1| exosome-associated protein 4 [Trypanosoma brucei]
Length = 227
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 63 SAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFAT----PIRGQGSDHKDF 118
SA E G+T+V+ +V P++ S GR+ C V ++ A R + KD
Sbjct: 29 SACIEVGSTRVVCAVHHPQQLIDEYRGSR-GRVACTVRRSSRAQKHELAFRADVTPEKDL 87
Query: 119 SSMLHKALEGAIILETFPKTTVDVFALVL-ESGG 151
+ L +E A++LE P+ V+V +L E GG
Sbjct: 88 ALALEGVVEQAVVLEKIPQLLVEVVVEILAEDGG 121
>gi|328875787|gb|EGG24151.1| hypothetical protein DFA_06297 [Dictyostelium fasciculatum]
Length = 329
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D+R +Q RP +N A GSA G + V+ +V+GP + K A I +
Sbjct: 85 RDDTRLSNQIRPIESEQALLNKADGSAKFSQGKSSVLAAVYGPIDVKTA-RKEKISKSVV 143
Query: 98 NVSYTTFATPIRGQGSD-HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+VS+ TP G + K+ ++ A+E I+ P+T ++V V + G
Sbjct: 144 DVSF----TPATGNTTYFDKEREMLVRNAVESIILTLLHPRTQINVIVQVYSNDG 194
>gi|357117089|ref|XP_003560307.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Brachypodium
distachyon]
Length = 238
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GPR + G
Sbjct: 5 RGDGRNANQLRPFTCARNPLDRAHGSARWSQGDTVVLAAVYGPRPGTRK------GENPE 58
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S P GQ G K + L + L+ +L P TT V V+ G
Sbjct: 59 KASIEVVWKPKTGQSGKQEKGYEMTLKRTLQSICLLTVHPNTTTSVILQVMGDDG 113
>gi|261335123|emb|CBH18117.1| exosome-associated protein 4, putative [Trypanosoma brucei
gambiense DAL972]
Length = 232
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 63 SAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFAT----PIRGQGSDHKDF 118
SA E G+T+V+ +V P++ S GR+ C V ++ A R + KD
Sbjct: 34 SACIEVGSTRVVCAVHHPQQLIDEYRGSR-GRVACTVRRSSRAQKHGLAFRADVTPEKDL 92
Query: 119 SSMLHKALEGAIILETFPKTTVDVFALVL-ESGG 151
+ L +E A++LE P+ V+V +L E GG
Sbjct: 93 ALALEGVVEQAVVLEKIPQLLVEVVVEILAEDGG 126
>gi|427711765|ref|YP_007060389.1| RNAse PH [Synechococcus sp. PCC 6312]
gi|427375894|gb|AFY59846.1| RNAse PH [Synechococcus sp. PCC 6312]
Length = 239
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R + Q RP F+ GS A G T+V+ +V K + S G L
Sbjct: 3 WQRPDGRDWQQLRPVSFQRNFTQFTPGSVLASCGQTRVLCTVSVRPGVPKFLEGSGQGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
ATP R + +K + ++ ++L A+ L + T+ V A VL++
Sbjct: 63 TAEYRMLPSATPQRQERELYKLSGRTQEIQRLIGRSLRAALDLGGLGERTILVDADVLQA 122
>gi|328771377|gb|EGF81417.1| hypothetical protein BATDEDRAFT_23824 [Batrachochytrium
dendrobatidis JAM81]
Length = 217
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R Q R G ++ A GSA G + V+ SV+GP S+ + +
Sbjct: 18 RPDKRSVTQLRTMGCVVGMLSRADGSARFTLGKSSVLCSVYGPTASRPR--DEKLDHAHI 75
Query: 98 NVSYTTFATPIRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V + +P+ G G+ + + + + +E ++ P+TT+ + VL G
Sbjct: 76 QVVF----SPVSGISGTQERTYEHFIRQVVEAIVLSALHPRTTIQITLQVLFDDG 126
>gi|91080613|ref|XP_974147.1| PREDICTED: similar to AGAP002348-PA [Tribolium castaneum]
gi|270005510|gb|EFA01958.1| hypothetical protein TcasGA2_TC007574 [Tribolium castaneum]
Length = 389
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
+W R D R F + RP + G GS Y GNTKV+ + K+ S G
Sbjct: 23 EWRRLDGRSFDEFRPLELKFG---KQWGSCYVSLGNTKVLAQTSCEIQQPKSSRPSE-GI 78
Query: 95 LNCNVSYTTFATPIRGQGSDHKDFSSMLHKALE------GAIILETFP-KTTVDVFAL 145
LN N+ A P + + S L++ LE A+ LE+ KT V+AL
Sbjct: 79 LNINIELNPLAAP-HFEAGRQSELSVQLNRLLEKCVKDSKAVDLESLCIKTNEKVWAL 135
>gi|427724497|ref|YP_007071774.1| RNAse PH [Leptolyngbya sp. PCC 7376]
gi|427356217|gb|AFY38940.1| RNAse PH [Leptolyngbya sp. PCC 7376]
Length = 241
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD+R F Q RP F A S G+TKV+ ++ + S G L
Sbjct: 3 WQRPDNRTFDQLRPFKFEVDFTKFAKASVLTSCGDTKVLCTISVEDRVPPFLRDSGQGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
ATP R + K + ++ ++L A+ L+ + T+ V A V+++
Sbjct: 63 TAEYRMMPGATPERQRREFMKLSGRTQEIQRLIGRSLRAAVDLKALGERTITVDADVMQA 122
Query: 150 GG 151
G
Sbjct: 123 DG 124
>gi|224001004|ref|XP_002290174.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973596|gb|EED91926.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 172
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 19/134 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV------------NSASGSAYAEFGNTKVIVSVFGPRES- 83
LR D R H+ R GA+ ++ SGSA G T+V+ V GP ++
Sbjct: 8 LRSDGRRPHEIRHMSCHLGALPSTTACGSALPTSACSGSALVSMGLTQVLCVVRGPSDAG 67
Query: 84 KKAMMYSNIGRLNCNVSYTTFATP----IRGQGSDHK--DFSSMLHKALEGAIILETFPK 137
++ + L + + F+ P + SD + + S +L AL +I+L +PK
Sbjct: 68 RRTEELPDRATLEVTMRTSPFSPPGDRRVTNPTSDRRLIEQSHLLQTALSASILLHLYPK 127
Query: 138 TTVDVFALVLESGG 151
+ + V +VL G
Sbjct: 128 SKISVTVMVLADDG 141
>gi|323308949|gb|EGA62180.1| Ski6p [Saccharomyces cerevisiae FostersO]
Length = 194
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 71 TKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLH------ 123
TK+I V GP+E + K+ M ++ LN +V+ T F+ R + S HK+ +L
Sbjct: 33 TKIITLVKGPKEPRLKSQMDTSKALLNVSVNITKFSKFERSKSS-HKNERRVLEIQTSLV 91
Query: 124 KALEGAIILETFPKTTVDVFALVLESGG 151
+ E ++L +P+T +D+ VLE G
Sbjct: 92 RMFEKNVMLNIYPRTVIDIEIHVLEQDG 119
>gi|434398219|ref|YP_007132223.1| RNAse PH [Stanieria cyanosphaera PCC 7437]
gi|428269316|gb|AFZ35257.1| RNAse PH [Stanieria cyanosphaera PCC 7437]
Length = 237
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R Q R F+ +SA+ S +GNTKV+ + + ++ S G L
Sbjct: 3 WQRPDGRKLDQMRSLVFQCDFTSSAAASVLTHWGNTKVLCTASIQPGVPRFLIDSGQGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
AT R Q K + ++ ++L AI L+ + TV + A VL++
Sbjct: 63 TAEYRMLPSATVPRQQREWLKLSGRTQEIQRLIGRSLRAAIDLKALGERTVTIDADVLQA 122
>gi|14591332|ref|NP_143410.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus horikoshii
OT3]
gi|29336585|sp|O59224.1|ECX2_PYRHO RecName: Full=Probable exosome complex exonuclease 2
gi|3257977|dbj|BAA30660.1| 274aa long hypothetical autoantigen like protein [Pyrococcus
horikoshii OT3]
Length = 274
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS------N 91
R D RGF RP G + A GSA + G+T+V+V + K + N
Sbjct: 24 RIDDRGFEDYRPIEIEVGIIEKAEGSALVKLGSTQVLVGI-------KTTLGEPFPDTPN 76
Query: 92 IGRLNCNVSYTTFATP 107
+G + NV A+P
Sbjct: 77 MGVMTTNVELVPLASP 92
>gi|315127898|ref|YP_004069901.1| tRNA nucleotidyltransferase [Pseudoalteromonas sp. SM9913]
gi|359437372|ref|ZP_09227439.1| ribonuclease PH [Pseudoalteromonas sp. BSi20311]
gi|359444209|ref|ZP_09234012.1| ribonuclease PH [Pseudoalteromonas sp. BSi20439]
gi|392557299|ref|ZP_10304436.1| ribonuclease PH [Pseudoalteromonas undina NCIMB 2128]
gi|315016412|gb|ADT69750.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas sp.
SM9913]
gi|358027956|dbj|GAA63688.1| ribonuclease PH [Pseudoalteromonas sp. BSi20311]
gi|358041960|dbj|GAA70261.1| ribonuclease PH [Pseudoalteromonas sp. BSi20439]
Length = 237
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R +Q RP F A GS EFGNTKV+ + + M G +N
Sbjct: 1 MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWVN 60
Query: 97 CNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ ++L AI L+ + T+ + V++
Sbjct: 61 AEYGMLPRATHTRNSREATRGKQGGRTMEIQRLIARSLRAAIDLKALGENTITIDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|12848640|dbj|BAB28033.1| unnamed protein product [Mus musculus]
Length = 283
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 93 GRLNCNVSYTTFATPIR----GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
GRL C+ F+ R G G + ++ L +ALE A+ L +P+ ++V AL+LE
Sbjct: 104 GRLLCDFRRAPFSGRRRRAPQGGGGEDRELGLALQEALEPAVRLGRYPRAQLEVSALLLE 163
Query: 149 SGG 151
GG
Sbjct: 164 DGG 166
>gi|453086483|gb|EMF14525.1| ribosomal protein S5 domain 2-like protein [Mycosphaerella
populorum SO2202]
Length = 371
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA 86
LR D R +++ R + +A GS+Y E GNTKVI +V GPR+ ++
Sbjct: 130 LRVDGRRWNELRCISGQMSTQAAADGSSYFEMGNTKVICTVVGPRQQTRS 179
>gi|380791323|gb|AFE67537.1| exosome complex component MTR3, partial [Macaca mulatta]
Length = 90
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 37 RPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
>gi|321262691|ref|XP_003196064.1| 3'-to-5' phosphorolytic exoribonuclease; Ski6p [Cryptococcus gattii
WM276]
gi|317462539|gb|ADV24277.1| 3'-to-5' phosphorolytic exoribonuclease, putative; Ski6p
[Cryptococcus gattii WM276]
Length = 262
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSN----I 92
LR D+R ++ R F+ S+ GS+ A G T V+VSVFGPRE + + S+ +
Sbjct: 14 LRQDARRPYELRSTSFQLSTHPSSDGSSTATQGLTTVVVSVFGPREPRNRSLASHDRAVV 73
Query: 93 GRLNCNVSYTTFATPIRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V + A R +G ++ + + + E I+ +P++ + + VL + G
Sbjct: 74 SVEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVLSADG 133
>gi|312134904|ref|YP_004002242.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
owensensis OL]
gi|311774955|gb|ADQ04442.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
owensensis OL]
Length = 701
Score = 42.0 bits (97), Expect = 0.079, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+ M + N + T + PIRG G ++ +ALE I E T+ + +
Sbjct: 373 RYMHHYNFPPFS-----TGESKPIRGPGRREIGHGALAERALEPVIPSEDEFPYTIRLVS 427
Query: 145 LVLESGG 151
VL S G
Sbjct: 428 EVLTSNG 434
>gi|308481633|ref|XP_003103021.1| CRE-EXOS-4.2 protein [Caenorhabditis remanei]
gi|308260397|gb|EFP04350.1| CRE-EXOS-4.2 protein [Caenorhabditis remanei]
Length = 273
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
RP + G + GS YAEFGNT+V+ + GP K +Y
Sbjct: 70 RPLCVKCGVFGAQDGSGYAEFGNTRVLAQITGPEGDGK-----------WEEAYAKVTIT 118
Query: 108 IRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
++G ++ K + + + +L I + +P +D+ VL G
Sbjct: 119 LKGVENETKVAELRADMTSSLSAVIFVNKYPGKVIDIEVTVLSDDG 164
>gi|289706339|ref|ZP_06502697.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58]
gi|289556834|gb|EFD50167.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58]
Length = 254
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R + RP G A GSA EFGNT+V+ + + + G +
Sbjct: 10 RPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTA 69
Query: 98 NVSYTTFATPIRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT R Q G + S ++ ++L I L + T+ + VL++
Sbjct: 70 EYAMLPRATNERNQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCDVLDA 129
Query: 150 GG 151
G
Sbjct: 130 DG 131
>gi|302872107|ref|YP_003840743.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
obsidiansis OB47]
gi|302574966|gb|ADL42757.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
obsidiansis OB47]
Length = 701
Score = 42.0 bits (97), Expect = 0.080, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+ M + N + T + PIRG G ++ +ALE I E T+ + +
Sbjct: 373 RYMHHYNFPPFS-----TGESKPIRGPGRREIGHGALAERALEPVIPSEDEFPYTIRLVS 427
Query: 145 LVLESGG 151
VL S G
Sbjct: 428 EVLTSNG 434
>gi|311068192|ref|YP_003973115.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
1942]
gi|419823827|ref|ZP_14347361.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
C89]
gi|310868709|gb|ADP32184.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
1942]
gi|388472066|gb|EIM08855.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
C89]
Length = 705
Score = 42.0 bits (97), Expect = 0.082, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G ++ GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E T+ +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPSEKDFPYTIRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|291299064|ref|YP_003510342.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728]
gi|290568284|gb|ADD41249.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728]
Length = 241
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD+R RP F+ G GS EFG+T+V+ + + S G +
Sbjct: 3 RPDNRAPDALRPVKFQRGWTKHPEGSVLVEFGDTRVLCTASVDTGVPRWRRGSGSGWVTA 62
Query: 98 NVSYTTFATPIRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT RG G + S ++ +AL + L+ + T+ + VL++
Sbjct: 63 EYSMLPRATNTRGDREAVKGKIGGRTHEISRLIGRALRSCLDLKALGENTITIDCDVLQA 122
Query: 150 GG 151
G
Sbjct: 123 DG 124
>gi|82793240|ref|XP_727962.1| exonuclease RRP41 [Plasmodium yoelii yoelii 17XNL]
gi|23484066|gb|EAA19527.1| exonuclease RRP41, putative [Plasmodium yoelii yoelii]
Length = 218
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 58 NSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPI------RGQ 111
N A G A+ E GNTK++ + GP E KK C++ F +P + +
Sbjct: 8 NDADGFAFYEIGNTKILSYIQGPTELKKT-------DDKCSIKCDVFLSPFNVYDKRKKK 60
Query: 112 GSDH--KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
D+ + S+ + E I+L+ + + +++F ++E G
Sbjct: 61 TKDNITNEISAYIRNICENIILLDLYKNSEINIFLYIIERDG 102
>gi|443313829|ref|ZP_21043439.1| ribonuclease PH [Synechocystis sp. PCC 7509]
gi|442776242|gb|ELR86525.1| ribonuclease PH [Synechocystis sp. PCC 7509]
Length = 240
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R Q RP F G A+ S G+T+V+ +V K ++ S G L
Sbjct: 3 WQRPDGRQSEQLRPISFELGFTRFATSSVLTRCGDTQVLCTVTISDGVPKFLVGSGKGWL 62
Query: 96 NCNVSYTTFATPIRG------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
ATP R ++ ++ ++L A+ LE + T+ + + VL++
Sbjct: 63 TAEYRMLPGATPQRQPRELLKLSGRTQEIQRLIGRSLRAAVDLEALGERTITIDSDVLQA 122
>gi|158335996|ref|YP_001517170.1| ribonuclease PH [Acaryochloris marina MBIC11017]
gi|189043752|sp|B0CAB9.1|RNPH_ACAM1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|158306237|gb|ABW27854.1| ribonuclease PH [Acaryochloris marina MBIC11017]
Length = 239
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R Q RP F + A+GS AE G TKV+ +V + + + G L
Sbjct: 3 WQRPDGRQPDQLRPIRFHREYTHFAAGSVLAECGQTKVLCTVSVQPGVPRFLEDTGQGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+TP R + K + ++ ++L A+ L+ + T+ V A VL++
Sbjct: 63 TAEYRMLPGSTPERQRRELMKLSGRTQEIQRLIGRSLRAALDLQALGERTLVVDADVLQA 122
>gi|239917361|ref|YP_002956919.1| RNAse PH [Micrococcus luteus NCTC 2665]
gi|281414156|ref|ZP_06245898.1| RNAse PH [Micrococcus luteus NCTC 2665]
gi|239838568|gb|ACS30365.1| RNAse PH [Micrococcus luteus NCTC 2665]
Length = 254
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R + RP G A GSA EFGNT+V+ + + + G +
Sbjct: 10 RPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTA 69
Query: 98 NVSYTTFATPIRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT R Q G + S ++ ++L I L + T+ + VL++
Sbjct: 70 EYAMLPRATNERSQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCDVLDA 129
Query: 150 GG 151
G
Sbjct: 130 DG 131
>gi|383825238|ref|ZP_09980388.1| ribonuclease PH [Mycobacterium xenopi RIVM700367]
gi|383334968|gb|EID13400.1| ribonuclease PH [Mycobacterium xenopi RIVM700367]
Length = 259
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVS---VFG-PRESKKAMMYSNIG 93
R D R H+ RP G ++ +GS EFG TKV+ + V G PR K+ S +G
Sbjct: 4 REDGRLDHELRPVVITRGFTSNPAGSVLVEFGRTKVMCAASVVEGVPRWRKE----SGLG 59
Query: 94 RLNCNVSYTTFATPIRGQGSDHK--------DFSSMLHKALEGAIILETFPKTTVDVFAL 145
L + AT RG K + S ++ ++L I L + T+ +
Sbjct: 60 WLTAEYAMLPAATHTRGDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCD 119
Query: 146 VLESGG 151
VL++ G
Sbjct: 120 VLQADG 125
>gi|315452709|ref|YP_004072979.1| polyribonucleotide nucleotidyltransferase [Helicobacter felis ATCC
49179]
gi|315131761|emb|CBY82389.1| polyribonucleotide nucleotidyltransferase [Helicobacter felis ATCC
49179]
Length = 679
Score = 42.0 bits (97), Expect = 0.091, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTK--VIVSVFGPRESKKAMMYSNIG-- 93
RPD RGF RP T + GSA G+T+ V+ +V GP ++K + N+
Sbjct: 307 RPDGRGFETIRPISIETNLLPHCHGSALFTRGHTQALVVCTVGGPNDAK---LQENLDGL 363
Query: 94 ---RLNCNVSYTTF----ATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
R + ++ F ATP+ G ++ AL+G+ ILE+ T+ + + +
Sbjct: 364 HKERFMFHYNFPPFSVGEATPLSAPGRREIGHGNLAKCALQGS-ILES--DQTIRLVSEI 420
Query: 147 LESGG 151
LES G
Sbjct: 421 LESNG 425
>gi|242399325|ref|YP_002994749.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
739]
gi|242265718|gb|ACS90400.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
739]
Length = 269
Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMM------YSN 91
R D RG RP T + A GSA + GNT+V+V + K + +
Sbjct: 21 RIDGRGLEDFRPLTVETNVIEKAEGSALVKLGNTQVLVGI-------KVELGEPFPDLPD 73
Query: 92 IGRLNCNVSYTTFATP 107
+G + NV + A+P
Sbjct: 74 MGVITTNVEFVPLASP 89
>gi|388522149|gb|AFK49136.1| unknown [Lotus japonicus]
Length = 286
Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R RP + TG + A GSA G T+VI SV K +++ + G+++
Sbjct: 20 LRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAEL-GKPSLLQPDKGKVS 78
Query: 97 CNVSYTTFATP-IRGQGSDHKDFSSMLHKALEGAII-LETFPKTTVDVFALVLESG 150
+ ++ A P G+G D D S+ L AL+ +++ ++ +D+ +L++ G
Sbjct: 79 IYIDCSSTAEPAFEGRGGD--DLSAELSVALQRSLLGAKSGAGAGIDLSSLIVVEG 132
>gi|403215571|emb|CCK70070.1| hypothetical protein KNAG_0D03240 [Kazachstania naganishii CBS
8797]
Length = 218
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTT-FATPIRG 110
+ T +++GS+ E + ++ +V+GPR +++ SN G +N +S + F T G
Sbjct: 38 YTTRVTANSNGSSLVETESMSLLTAVYGPRPTREQQFRSN-GTVNVVLSRSERFPT---G 93
Query: 111 QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
Q K+ + L LE + LE +PK+ +DVF
Sbjct: 94 Q---LKELGAFLVSVLESCVCLEKYPKSGIDVFV 124
>gi|392546678|ref|ZP_10293815.1| ribonuclease PH [Pseudoalteromonas rubra ATCC 29570]
Length = 237
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP R +Q RP F A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPSERTANQIRPVTFTRNYTMHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWIT 60
Query: 90 SNIGRLNCNVSYTTFATPIRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L + +G QG + ++ +AL A+ L + T+ + VL+
Sbjct: 61 AEYGMLPRSTHTRNGREAAKGKQGGRTMEIQRLIARALRAAVDLSALGENTITIDCDVLQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|361130522|gb|EHL02291.1| putative Exosome complex component ski6 [Glarea lozoyensis 74030]
Length = 109
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
LR D R +++ R A RT A SA GSAY E GNTKVI +V GP E
Sbjct: 13 LRLDGRRWNELRRLTAQMRTQA--SADGSAYLEMGNTKVICTVSGPSE 58
>gi|378551363|ref|ZP_09826579.1| hypothetical protein CCH26_14789 [Citricoccus sp. CH26A]
Length = 269
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + RP G A GSA EFGNT+V+ + + + G +
Sbjct: 29 RQDGRALNALRPISITRGWSRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTA 88
Query: 98 NVSYTTFATPIRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT R Q G + S ++ ++L I L+ + T+ + VLE+
Sbjct: 89 EYAMLPRATNTRSQRESVKGRIGGRTHEISRLIGRSLRAIIDLKVLGENTIVLDCDVLEA 148
Query: 150 GG 151
G
Sbjct: 149 DG 150
>gi|119472968|ref|ZP_01614824.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonadales bacterium
TW-7]
gi|359450276|ref|ZP_09239735.1| ribonuclease PH [Pseudoalteromonas sp. BSi20480]
gi|392540176|ref|ZP_10287313.1| ribonuclease PH [Pseudoalteromonas marina mano4]
gi|119444637|gb|EAW25947.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonadales bacterium
TW-7]
gi|358043922|dbj|GAA75984.1| ribonuclease PH [Pseudoalteromonas sp. BSi20480]
Length = 237
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R +Q RP F A GS EFGNTKV+ + + M G +N
Sbjct: 1 MRPSQRTPNQIRPVSFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60
Query: 97 CNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+T R QG + ++ +AL A+ L+ + T+ + V++
Sbjct: 61 AEYGMLPRSTHTRNAREASRGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|342319249|gb|EGU11199.1| Exosome non-catalytic core component involved in 3'-5' RNA
processing and degradation [Rhodotorula glutinis ATCC
204091]
Length = 301
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
RP G ++ A GSA FGN V+ SV GP E + + L NV P
Sbjct: 13 RPLALSQGTLSRADGSAQFTFGNVSVLGSVTGPAEVRLRDELVDRATLEINVR------P 66
Query: 108 IRGQGSDH-KDFSSMLHKALEGAIILETFPKTTV 140
+RGQG K +S L + I+L +P+ +
Sbjct: 67 LRGQGGPPIKAAASTLSQLFAPLILLHLYPRALI 100
>gi|149182492|ref|ZP_01860966.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1]
gi|148849823|gb|EDL63999.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1]
Length = 706
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
LRPD RG + RP + G + GS G T+ ++ G ES
Sbjct: 315 LRPDGRGLDEIRPLASQVGLLPRTHGSGLFTRGQTQALSICTLGAMGDVQVIDGLGLEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + PIRG G ++ +ALE I E T+ +
Sbjct: 375 KRFMHHYNFPLFSVGET-----GPIRGPGRREIGHGALGERALEPIIPNEKDFPYTIRIV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|74025204|ref|XP_829168.1| exosome-associated protein 4 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70834554|gb|EAN80056.1| exosome-associated protein 4 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 227
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 63 SAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFAT----PIRGQGSDHKDF 118
SA E G+T+V+ +V P++ S GR+ C V ++ A R + KD
Sbjct: 29 SACIEVGSTRVVCAVHHPQQLIDEYRGSR-GRVACTVRRSSRAQKHELAFRADVTPEKDL 87
Query: 119 SSMLHKALEGAIILETFPKTTVDVFALVL-ESGG 151
+ L +E A++LE P+ V+V +L E GG
Sbjct: 88 ALALEGVVEQAVVLEKIPQLLVEVAVEILAEDGG 121
>gi|397579612|gb|EJK51273.1| hypothetical protein THAOC_29565, partial [Thalassiosira oceanica]
Length = 340
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 55 GAVNSA--SGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVSYTTFATPIRGQ 111
GA+ SA SGSA G TKV+ S GP ++ +++ + L V FA P +
Sbjct: 100 GALPSAGCSGSAMVTLGLTKVLCSSGGPCDATRRSEELPDRASLEVLVRAAPFAPPGDRR 159
Query: 112 G----SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+D + + S +L +AL +I+L FP++ + V +VL G
Sbjct: 160 NVNPTTDRRLVEASHLLQRALSASILLHLFPRSKISVTVMVLADDG 205
>gi|220910436|ref|YP_002485747.1| ribonuclease PH [Cyanothece sp. PCC 7425]
gi|254808586|sp|B8HPC6.1|RNPH_CYAP4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|219867047|gb|ACL47386.1| ribonuclease PH [Cyanothece sp. PCC 7425]
Length = 239
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R HQ RP F G A+GS G T+V+ +V K + G L
Sbjct: 3 WQRPDGRQSHQLRPISFERGFTRFAAGSVLTRCGQTQVLCNVTVRPGVPKFLEGRGQGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
ATP R + K + ++ ++L A+ + + T+ V A VL++
Sbjct: 63 TAEYRMLPAATPQRQEREMLKLSGRTQEIQRLIGRSLRAALDFDLLGERTLVVDADVLQA 122
>gi|269128062|ref|YP_003301432.1| ribonuclease PH [Thermomonospora curvata DSM 43183]
gi|268313020|gb|ACY99394.1| ribonuclease PH [Thermomonospora curvata DSM 43183]
Length = 239
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R Q RP + ++ A GS EFG T+V+ + + S +G +
Sbjct: 3 RPDDRAPDQLRPVRIQRNWLDHAEGSVLIEFGATRVLCAASVQDSVPRWRRDSGLGWVTA 62
Query: 98 NVSYTTFATPIRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT RG+ G ++ S ++ ++L + + + TV + VL++
Sbjct: 63 EYAMLPRATHTRGERESVKGRLGGRTQEISRLIGRSLRACVDFKELGENTVVLDCDVLQA 122
Query: 150 GG 151
G
Sbjct: 123 DG 124
>gi|237785978|ref|YP_002906683.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385]
gi|259494118|sp|C4LJY5.1|RNPH_CORK4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|237758890|gb|ACR18140.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385]
Length = 254
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D++R D R + RP G + +GS EFGNT+V+ + + S G
Sbjct: 3 DFVRADGRALDEMRPVRIVRGFTTNPAGSVLVEFGNTRVMCTASVEDRVPRFKKDSGEGW 62
Query: 95 LNCNVSYTTFATP-------IRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
L S AT +RG +G H + S ++ ++L AI L+ + T+ +
Sbjct: 63 LTAEYSMLPSATAERMPRESMRGKVKGRTH-EISRLVGRSLRAAIDLKALGENTIALDCD 121
Query: 146 VLESGG 151
VL++ G
Sbjct: 122 VLQADG 127
>gi|281200843|gb|EFA75059.1| hypothetical protein PPL_11677 [Polysphondylium pallidum PN500]
Length = 233
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
+R D R +Q R +N A GSA N+ V+ +++GP E I +
Sbjct: 1 MVRIDKRNNNQIRSIESELALLNKADGSAKFSLDNSSVLAAIYGPVEVNPR--KEKISKA 58
Query: 96 NCNVSYTTFATPIRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V + TP G Q K+ S++ A+E I+ P+T + + V + G
Sbjct: 59 TVEVVF----TPDSGNQNYQTKEQESLIRNAIESVIMTMLHPRTLISIIIQVYSTDG 111
>gi|395236506|ref|ZP_10414695.1| ribonuclease PH [Turicella otitidis ATCC 51513]
gi|423350611|ref|ZP_17328264.1| ribonuclease PH [Turicella otitidis ATCC 51513]
gi|394488394|emb|CCI82783.1| ribonuclease PH [Turicella otitidis ATCC 51513]
gi|404387376|gb|EJZ82496.1| ribonuclease PH [Turicella otitidis ATCC 51513]
Length = 247
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV--------FGPRESKKA 86
D+ R D R + RP G + +GS AEFGNTKV+ + F R+S +
Sbjct: 5 DFTRADGRATSELRPVRLTRGFTTNPAGSVLAEFGNTKVLCAASIQEGVPRF-KRDSGEG 63
Query: 87 MMYSNIGRLNCNVSYTTFATPIRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+ + L + + +RG +G H + S ++ ++L A+ L + T+ +
Sbjct: 64 WLTAEYAMLPASTHERSPRESMRGKVKGRTH-EISRLVGRSLRAAVDLSELGENTIQLDC 122
Query: 145 LVLESGG 151
VL++ G
Sbjct: 123 DVLQADG 129
>gi|156089789|ref|XP_001612301.1| hypothetical protein [Babesia bovis T2Bo]
gi|154799555|gb|EDO08733.1| conserved hypothetical protein [Babesia bovis]
Length = 196
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 55 GAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSD 114
G SASGS+Y G+T V V PR K ++ +G L+ V Y+ P S
Sbjct: 2 GISYSASGSSYITLGDTMVKACVNVPRPCGKRLL-QEVGILSIEVRYSKPHIP----SSS 56
Query: 115 HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
D +L + E +IL +P+ ++ + + E G
Sbjct: 57 DADLRHVLTELFERHVILSRYPRQLIEAWVTIEEDAG 93
>gi|344995762|ref|YP_004798105.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
lactoaceticus 6A]
gi|343963981|gb|AEM73128.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
lactoaceticus 6A]
Length = 701
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+ M + N + T + P+RG G ++ +ALE I E T+ + +
Sbjct: 373 RYMHHYNFPPFS-----TGESKPVRGPGRREIGHGALAERALEPVIPSEDEFPYTIRLVS 427
Query: 145 LVLESGG 151
VL S G
Sbjct: 428 EVLTSNG 434
>gi|312622695|ref|YP_004024308.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203162|gb|ADQ46489.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
kronotskyensis 2002]
Length = 701
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+ M + N + T + P+RG G ++ +ALE I E T+ + +
Sbjct: 373 RYMHHYNFPPFS-----TGESKPVRGPGRREIGHGALAERALEPVIPSEDEFPYTIRLVS 427
Query: 145 LVLESGG 151
VL S G
Sbjct: 428 EVLTSNG 434
>gi|302837568|ref|XP_002950343.1| hypothetical protein VOLCADRAFT_90878 [Volvox carteri f.
nagariensis]
gi|300264348|gb|EFJ48544.1| hypothetical protein VOLCADRAFT_90878 [Volvox carteri f.
nagariensis]
Length = 311
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+R D R H RP G + A+GSA G T VIV V S + N GRL
Sbjct: 18 VRLDGRSCHDMRPVELELGVIAQAAGSARLRMGATDVIVGVKVEVGSPSS-SAPNQGRLQ 76
Query: 97 CNVSYTTFATPI 108
V ++ A+PI
Sbjct: 77 VTVEFSPCASPI 88
>gi|312793244|ref|YP_004026167.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180384|gb|ADQ40554.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 701
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+ M + N + T + P+RG G ++ +ALE I E T+ + +
Sbjct: 373 RYMHHYNFPPFS-----TGESKPVRGPGRREIGHGALAERALEPVIPSEDEFPYTIRLVS 427
Query: 145 LVLESGG 151
VL S G
Sbjct: 428 EVLTSNG 434
>gi|149246481|ref|XP_001527695.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146447649|gb|EDK42037.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 308
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 24/117 (20%)
Query: 49 PAFF-RTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-----KAMMYSNIGRL------- 95
P F+ + G + +++GSAY E G T + VSVFGP+ + KA + L
Sbjct: 52 PKFYLKQGIIQNSNGSAYLEIGRTIIEVSVFGPKPIRGSFIDKATLSVETKFLPHVLQPC 111
Query: 96 -----NCNVSYTTFATPIRGQGS-----DHKDFSSMLHKALEGAIILETFPKTTVDV 142
N ++ + QG+ +H+ SS + + +IILE +PK+T+D+
Sbjct: 112 GDLFNNNSIDNALNNKHQQAQGTGMSAIEHR-ISSYVENCILPSIILEKYPKSTIDI 167
>gi|260893502|ref|YP_003239599.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4]
gi|260865643|gb|ACX52749.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4]
Length = 736
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGP------------RES 83
+R D RGF RP G + GSA G T+V+ V G ES
Sbjct: 325 IRADGRGFKDIRPLSVEVGLLPRTHGSALFTRGQTQVLSVVTLGAVGDEQILDDLDLEES 384
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + T PIR G +++ +ALE I E T+ V
Sbjct: 385 KRFMHHYNFPPFS-----TGEVRPIRSPGRREIGHGALVERALEAVIPDEDAFPYTIRVV 439
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 440 SEVLESNG 447
>gi|449016995|dbj|BAM80397.1| similar to ribonuclease PH [Cyanidioschyzon merolae strain 10D]
Length = 482
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMM 88
+D LR D R + R + G V A GS E G T+V+V+V+GP E+KK +
Sbjct: 9 LDGLRVDGRKPDEVRSISAQLGVVPGADGSVLVEQGQTRVLVAVYGPYETKKGAL 63
>gi|358058357|dbj|GAA95876.1| hypothetical protein E5Q_02533 [Mixia osmundae IAM 14324]
Length = 280
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
+RPD R F +CRP TG+V +A GS+ G T ++ +V
Sbjct: 31 IRPDGRAFDECRPCSSDTGSVTTADGSSLVRVGQTTMMCTV 71
>gi|389573204|ref|ZP_10163279.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. M 2-6]
gi|388426901|gb|EIL84711.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. M 2-6]
Length = 705
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|409990108|ref|ZP_11273535.1| ribonuclease PH [Arthrospira platensis str. Paraca]
gi|291567427|dbj|BAI89699.1| ribonuclease PH [Arthrospira platensis NIES-39]
gi|409939031|gb|EKN80268.1| ribonuclease PH [Arthrospira platensis str. Paraca]
Length = 242
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R Q RP F A+ S A+ GNT+V+ +V + + + G L
Sbjct: 4 WQRPDGRERDQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWL 63
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
ATP R K + ++ ++L A+ L+ + TV V A VL++
Sbjct: 64 TAEYRMLPGATPQRQPRELMKLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 123
>gi|20093818|ref|NP_613665.1| exosome complex RNA-binding protein Rrp42 [Methanopyrus kandleri
AV19]
gi|29336820|sp|Q8TYC2.1|ECX2_METKA RecName: Full=Probable exosome complex exonuclease 2
gi|19886741|gb|AAM01595.1| Predicted exosome subunit, predicted exoribonuclease related to
RNase PH [Methanopyrus kandleri AV19]
Length = 267
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
R D R F + RP R G ++ A+GSA GNT+++V V
Sbjct: 23 RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGV 62
>gi|312127889|ref|YP_003992763.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
hydrothermalis 108]
gi|311777908|gb|ADQ07394.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
hydrothermalis 108]
Length = 701
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+ M + N + T + P+RG G ++ +ALE I E T+ + +
Sbjct: 373 RYMHHYNFPPFS-----TGESKPVRGPGRREIGHGALAERALEPVIPSEDEFPYTIRLVS 427
Query: 145 LVLESGG 151
VL S G
Sbjct: 428 EVLTSNG 434
>gi|406939929|gb|EKD72849.1| Ribonuclease PH, partial [uncultured bacterium]
Length = 133
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVS---VFGP----RESKKAMMY 89
+RP +R +Q R F A GS EFG+TKVI + +G ++S K +
Sbjct: 1 MRPSNRANNQLRDIFLTRHVTKHAEGSVLVEFGDTKVICTASIAYGVPPFLKDSGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPIRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L + RG Q ++ ++ ++L A+ LE + T+ + V++
Sbjct: 61 AEYGMLPRSTHERMPREAARGKQTGRTQEIQRLIARSLRSAVNLEALGENTITIDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|389852856|ref|YP_006355090.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. ST04]
gi|388250162|gb|AFK23015.1| putative exosome complex RNA-binding protein Rrp42 [Pyrococcus sp.
ST04]
Length = 266
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS------N 91
R D RGF RP G + A GSA + G+T+V+V + K + N
Sbjct: 14 RIDDRGFEDYRPIEIEVGLIEKAEGSALVKLGSTQVLVGI-------KTTLGEPFPDTPN 66
Query: 92 IGRLNCNVSYTTFATP 107
+G + NV A+P
Sbjct: 67 MGVMTTNVELVPLASP 82
>gi|356554181|ref|XP_003545427.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 237
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Query: 38 RPDSRGFHQCRPAFFRTGA--VNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
RPDS+ +Q RP ++ + GSA TKV+ +V+GP+ K
Sbjct: 5 RPDSQTPNQLRPLACSCSCSILHRSHGSASWAQRETKVLAAVYGPKAGTKKNENPK---- 60
Query: 96 NCNVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S P GQ G K++ +L + LE I +P TT V ++ G
Sbjct: 61 --KASIKVIWKPKTGQIGKVEKEYEMILKRTLESICIRTIYPNTTTLVIVQIVHDDG 115
>gi|126652561|ref|ZP_01724726.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905]
gi|126590689|gb|EAZ84805.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905]
Length = 704
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 18/130 (13%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPR 81
D +RPD R + R TG + GS G T+ I+ G
Sbjct: 312 DKIRPDGRKLDEIRQLSSETGILQRTHGSGLFTRGQTQALSICTLGALGDVQIIDGLGVE 371
Query: 82 ESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
ESK+ M + N + + + PIRG G ++ +ALE I E+ T+
Sbjct: 372 ESKRFMHHYNFPQFSVGET-----GPIRGPGRREIGHGALGERALEAVIPDESVFPYTIR 426
Query: 142 VFALVLESGG 151
+ VLES G
Sbjct: 427 CVSEVLESNG 436
>gi|350265984|ref|YP_004877291.1| polyribonucleotid nucleotidyl transferase PnpA [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|349598871|gb|AEP86659.1| Polyribonucleotid nucleotidyl transferase PnpA [Bacillus subtilis
subsp. spizizenii TU-B-10]
Length = 705
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|296330884|ref|ZP_06873359.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305674402|ref|YP_003866074.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296151889|gb|EFG92763.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305412646|gb|ADM37765.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 705
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|194014349|ref|ZP_03052966.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC
7061]
gi|194013375|gb|EDW22940.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC
7061]
Length = 705
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|386758393|ref|YP_006231609.1| polynucleotide phosphorylase [Bacillus sp. JS]
gi|384931675|gb|AFI28353.1| polynucleotide phosphorylase [Bacillus sp. JS]
Length = 705
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|384175410|ref|YP_005556795.1| polyribonucleotide nucleotidyltransferase [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
gi|349594634|gb|AEP90821.1| polyribonucleotide nucleotidyltransferase [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
Length = 705
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|16078732|ref|NP_389551.1| polynucleotide phosphorylase [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309547|ref|ZP_03591394.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. 168]
gi|221313871|ref|ZP_03595676.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. NCIB 3610]
gi|221318794|ref|ZP_03600088.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. JH642]
gi|221323066|ref|ZP_03604360.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. SMY]
gi|321315436|ref|YP_004207723.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5]
gi|402775915|ref|YP_006629859.1| polynucleotide phosphorylase [Bacillus subtilis QB928]
gi|418033183|ref|ZP_12671660.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. SC-8]
gi|428279266|ref|YP_005561001.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. natto BEST195]
gi|430758907|ref|YP_007209628.1| Polynucleotide phosphorylase PnpA [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|449094359|ref|YP_007426850.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis XF-1]
gi|452914057|ref|ZP_21962684.1| polyribonucleotide nucleotidyltransferase [Bacillus subtilis
MB73/2]
gi|1709698|sp|P50849.3|PNP_BACSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase;
AltName: Full=Vegetative protein 15; Short=VEG15
gi|1184680|gb|AAC43595.1| polynucleotide phosphorylase [Bacillus subtilis]
gi|2634041|emb|CAB13542.1| polynucleotide phosphorylase (PNPase) [Bacillus subtilis subsp.
subtilis str. 168]
gi|291484223|dbj|BAI85298.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. natto BEST195]
gi|320021710|gb|ADV96696.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5]
gi|351469331|gb|EHA29507.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. SC-8]
gi|402481096|gb|AFQ57605.1| Polynucleotide phosphorylase (PNPase) [Bacillus subtilis QB928]
gi|407959076|dbj|BAM52316.1| polynucleotide phosphorylase [Synechocystis sp. PCC 6803]
gi|407964653|dbj|BAM57892.1| polynucleotide phosphorylase [Bacillus subtilis BEST7003]
gi|430023427|gb|AGA24033.1| Polynucleotide phosphorylase PnpA [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|449028274|gb|AGE63513.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis XF-1]
gi|452116477|gb|EME06872.1| polyribonucleotide nucleotidyltransferase [Bacillus subtilis
MB73/2]
gi|1589234|prf||2210369A polynucleotide phosphorylase
Length = 705
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|340714151|ref|XP_003395595.1| PREDICTED: exosome complex component RRP46-like [Bombus terrestris]
Length = 220
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVS 100
G + RP ++ GSA GNT V+ ++GP E+K + M+Y + + VS
Sbjct: 7 EGEFRLRPMNCELNQLSMPDGSAMLMQGNTTVVAGIYGPIEAKPQKMIYD---KASVEVS 63
Query: 101 YTTFATPIRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVFALVLESGG 151
Y +PI+G + M + + E AII+ P T + + LE G
Sbjct: 64 Y----SPIKGPAKVDDRMTEMYIKETCEAAIIVTFHPATAICINVQELEDSG 111
>gi|242007204|ref|XP_002424432.1| Exosome complex exonuclease RRP43, putative [Pediculus humanus
corporis]
gi|212507832|gb|EEB11694.1| Exosome complex exonuclease RRP43, putative [Pediculus humanus
corporis]
Length = 276
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
+RPD R +CRP + ++A GSA + GNT V+ V
Sbjct: 22 VRPDGRALDECRPISINVNSFHNADGSAIVKIGNTAVVCGV 62
>gi|157692352|ref|YP_001486814.1| polynucleotide phosphorylase/polyadenylase [Bacillus pumilus
SAFR-032]
gi|187470936|sp|A8FDD7.1|PNP_BACP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157681110|gb|ABV62254.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus
SAFR-032]
Length = 705
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|222529049|ref|YP_002572931.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor
bescii DSM 6725]
gi|257096680|sp|B9MR54.1|PNP_ANATD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|222455896|gb|ACM60158.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
bescii DSM 6725]
Length = 701
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEIGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+ M + N + T + P+RG G ++ +ALE I E T+ + +
Sbjct: 373 RYMHHYNFPPFS-----TGESKPVRGPGRREIGHGALAERALEPVIPSEDEFPYTIRLVS 427
Query: 145 LVLESGG 151
VL S G
Sbjct: 428 EVLTSNG 434
>gi|443632661|ref|ZP_21116840.1| polyribonucleotid nucleotidyl transferase PnpA [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
gi|443347484|gb|ELS61542.1| polyribonucleotid nucleotidyl transferase PnpA [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
Length = 705
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|398310762|ref|ZP_10514236.1| polynucleotide phosphorylase/polyadenylase [Bacillus mojavensis
RO-H-1]
Length = 705
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|398304210|ref|ZP_10507796.1| polynucleotide phosphorylase/polyadenylase [Bacillus vallismortis
DV1-F-3]
Length = 706
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|413932390|gb|AFW66941.1| hypothetical protein ZEAMMB73_899121 [Zea mays]
gi|413932391|gb|AFW66942.1| hypothetical protein ZEAMMB73_899121 [Zea mays]
Length = 122
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + G
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRK------GENPE 60
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S P GQ G +++ L + L+ +L P TT V V+ G
Sbjct: 61 KASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDG 115
>gi|407841343|gb|EKG00711.1| exosome-associated protein 4, putative,3' exoribonuclease, putative
[Trypanosoma cruzi]
Length = 229
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 63 SAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDH------- 115
SA E GNT+VI +V P++ S GR+ C V + A GS
Sbjct: 29 SACVELGNTRVICAVHHPQQLVDEYRGSR-GRVACTVRRSASAGS-HAAGSAQPSVVTPE 86
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVL-ESGG 151
KD S L E +ILE P+ V+V +L E GG
Sbjct: 87 KDMSLALEGVAEEVVILEKIPQLLVEVVVEILAEDGG 123
>gi|407977539|ref|ZP_11158376.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. HYC-10]
gi|407415792|gb|EKF37373.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. HYC-10]
Length = 705
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 IRPDGRGVDQIRPLSSEVGILPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E T+ +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPSEKDFPYTIRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|119479959|ref|XP_001260008.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
gi|119408162|gb|EAW18111.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
Length = 269
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-------AMMY 89
LR D R +++ R + ++SGS++ GNT ++ SV GP E K+ A
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 90 SNIGRLNCNVS-YTTFATPIRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ ++ NV+ + R GSD + +++L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNVAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 147 LESGG 151
L + G
Sbjct: 134 LSADG 138
>gi|332374620|gb|AEE62451.1| unknown [Dendroctonus ponderosae]
Length = 174
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
+RPD R F RP G++++A GSA A+ G T VI V
Sbjct: 22 IRPDGREFEDYRPVIVNVGSISTADGSAIAKVGKTTVICGV 62
>gi|407401878|gb|EKF29006.1| exosome-associated protein 4, putative,3' exoribonuclease, putative
[Trypanosoma cruzi marinkellei]
Length = 229
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 63 SAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA------TPIRGQGSDHK 116
SA E GNT+VI +V P++ N G + C V A + R + K
Sbjct: 29 SACVELGNTRVICAVHHPQQLVDEY-RGNRGHVACTVQRCASAGSHAAGSAQRSVVTPEK 87
Query: 117 DFSSMLHKALEGAIILETFPKTTVDVFALVL-ESGG 151
D S L E +ILE P+ V+V +L E GG
Sbjct: 88 DMSLALEGVAEEVVILEKIPQLLVEVVVEILAEDGG 123
>gi|403251154|ref|ZP_10917511.1| RNase PH [actinobacterium SCGC AAA027-L06]
gi|402915555|gb|EJX36521.1| RNase PH [actinobacterium SCGC AAA027-L06]
Length = 241
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPRESKKAMMYSNIGRLN 96
R D R Q RP F +N+A GS EFGNT+V+ V+ F P + ++ G +
Sbjct: 3 RSDDRSNDQLRPIKFTRNWLNNAEGSVLVEFGNTRVLCVASFTP-GVPRWLVGKGEGWVT 61
Query: 97 CNVSYTTFATPIRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ AT R G ++ S ++ ++L G + ++ + T+ + VL+
Sbjct: 62 SEYAMLPRATHTRSDRESVKGKLGGRTQEISRLVGRSLRGIVDMKALGENTIVIDCDVLQ 121
Query: 149 SGG 151
+ G
Sbjct: 122 ADG 124
>gi|350422333|ref|XP_003493132.1| PREDICTED: exosome complex component RRP46-like [Bombus impatiens]
Length = 220
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVS 100
G + RP ++ GSA GNT V+ ++GP E+K + M+Y + + VS
Sbjct: 7 EGEFRLRPMNCELNQLSMPDGSAMLMQGNTAVVAGIYGPIEAKPQKMIYD---KASVEVS 63
Query: 101 YTTFATPIRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVFALVLESGG 151
Y +PI+G + M + + E AII+ P T + + LE G
Sbjct: 64 Y----SPIKGPAKVDDRMTEMYIKETCEAAIIVTFHPATAICINIQELEDSG 111
>gi|375082087|ref|ZP_09729157.1| exosome complex RNA-binding protein Rrp42 [Thermococcus litoralis
DSM 5473]
gi|374743300|gb|EHR79668.1| exosome complex RNA-binding protein Rrp42 [Thermococcus litoralis
DSM 5473]
Length = 269
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV---FG-PRESKKAMMYSNIG 93
R D RG RP T + A GSA + GNT+V+V + FG P M G
Sbjct: 21 RIDGRGPEDLRPLTIETNVIEKAEGSALVKLGNTQVLVGIKVDFGEPFPDLPEM-----G 75
Query: 94 RLNCNVSYTTFATP 107
+ NV + A+P
Sbjct: 76 VMTTNVEFVPLASP 89
>gi|206972738|ref|ZP_03233672.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
gi|206732338|gb|EDZ49526.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
Length = 712
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 18/131 (13%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGP 80
V+ +RPD R + RP G ++ GS G T+ I+ G
Sbjct: 312 VEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGV 371
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTV 140
ESK+ M + N + + P+RGQG ++ +ALE I E TV
Sbjct: 372 EESKRFMHHYNFPSFSVGET-----RPMRGQGRREIGHGALGERALEPVIPSEKDFPYTV 426
Query: 141 DVFALVLESGG 151
+ + VLES G
Sbjct: 427 RLVSEVLESNG 437
>gi|341891925|gb|EGT47860.1| CBN-EXOS-4.2 protein [Caenorhabditis brenneri]
Length = 240
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP 80
++ + D R RP + G + GS YAEFGNT+V+ + GP
Sbjct: 23 MEAIEMDKRSATTFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQIIGP 69
>gi|71415718|ref|XP_809916.1| exosome-associated protein 4 [Trypanosoma cruzi strain CL Brener]
gi|70874370|gb|EAN88065.1| exosome-associated protein 4, putative [Trypanosoma cruzi]
Length = 229
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 63 SAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDH------- 115
SA E GNT+VI +V P++ S GR+ C V + A GS
Sbjct: 29 SACVELGNTRVICAVHHPQQLVDEYRGSR-GRVACTVRRSASAGS-HAAGSAQPSVVTPE 86
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVL-ESGG 151
KD S L E +ILE P+ V+V +L E GG
Sbjct: 87 KDMSLALEGVAEEVVILEKIPQLLVEVVVEILAEDGG 123
>gi|300867701|ref|ZP_07112346.1| ribonuclease PH [Oscillatoria sp. PCC 6506]
gi|300334284|emb|CBN57518.1| ribonuclease PH [Oscillatoria sp. PCC 6506]
Length = 243
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R +Q RP F+ A+GS A G+T+V+ +V K + ++ G L
Sbjct: 3 WQRPDGRQPNQLRPISFQREFTKFATGSVLARSGDTQVLCTVSIQPGVPKFLQFTGQGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
ATP R + K + ++ ++L + + + T+ V A VL++
Sbjct: 63 TAEYRMLPGATPQRQERELMKLSGRTQEIQRLIGRSLRSCLDMNLLGERTIIVDADVLQA 122
>gi|427715559|ref|YP_007063553.1| RNAse PH [Calothrix sp. PCC 7507]
gi|427347995|gb|AFY30719.1| RNAse PH [Calothrix sp. PCC 7507]
Length = 247
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R ++ RP F TG A GS A+ G+T+VI +V K + + G L
Sbjct: 3 WQRPDGRQPYELRPLSFHTGFTRFAPGSVLAKCGDTQVICTVSVAEGVPKFLAGTGKGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
AT R + K + ++ ++L AI + T+ V A VL++
Sbjct: 63 TAEYRMLPSATQQRHERELLKLSGRTQEIQRLIGRSLRAAIDFNILGERTLTVDADVLQA 122
>gi|394994014|ref|ZP_10386750.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. 916]
gi|393805093|gb|EJD66476.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. 916]
Length = 707
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|428673314|gb|EKX74227.1| 3' exoribonuclease domain 1 containing protein [Babesia equi]
Length = 150
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 15/115 (13%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSY 101
R F+Q RP + S SGS A GNTKV V P+ S K ++ + G +N
Sbjct: 7 RDFNQIRPLNIKLSVSLSFSGSCIASLGNTKVKCLVNLPKPSNKK-IFGDSGYMN----- 60
Query: 102 TTFATPIRGQGSDHKD-----FSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
I+ S H + + + E II + +P+ +D F ++ G
Sbjct: 61 ----LEIKSNSSVHSSKTLDILRTSILEVFERHIIFKDYPRQVIDAFLIIQNDDG 111
>gi|380488106|emb|CCF37603.1| 3' exoribonuclease [Colletotrichum higginsianum]
Length = 266
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK---AMMYSNI 92
LR D R +++ R + ++A GS+Y E G+TKV+ V GP E ++ A S
Sbjct: 12 LLRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPTEPQRRGGAGGQSKE 71
Query: 93 GRLNCNVSYTTFATPIRGQ-GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ N+ F++ R + G + K + + + KA+ + FP +++ + VL
Sbjct: 72 AAVTVNLVVAGFSSVDRKKRGRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLHVLS 131
Query: 149 SGG 151
G
Sbjct: 132 QDG 134
>gi|146297069|ref|YP_001180840.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|187470950|sp|A4XL64.1|PNP_CALS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145410645|gb|ABP67649.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 701
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+ M + N + T + P+RG G ++ +ALE I E T+ + +
Sbjct: 373 RYMHHYNFPPYS-----TGESKPVRGPGRREIGHGALAERALEPVIPSEDEFPYTIRLVS 427
Query: 145 LVLESGG 151
VL S G
Sbjct: 428 EVLTSNG 434
>gi|429505223|ref|YP_007186407.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|429486813|gb|AFZ90737.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
Length = 707
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|154686086|ref|YP_001421247.1| polynucleotide phosphorylase [Bacillus amyloliquefaciens FZB42]
gi|384265253|ref|YP_005420960.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|385264795|ref|ZP_10042882.1| polynucleotide phosphorylase [Bacillus sp. 5B6]
gi|387898250|ref|YP_006328546.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens Y2]
gi|452855616|ref|YP_007497299.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|187470933|sp|A7Z4U0.1|PNP_BACA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|154351937|gb|ABS74016.1| PnpA [Bacillus amyloliquefaciens FZB42]
gi|380498606|emb|CCG49644.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|385149291|gb|EIF13228.1| polynucleotide phosphorylase [Bacillus sp. 5B6]
gi|387172360|gb|AFJ61821.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens Y2]
gi|452079876|emb|CCP21634.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 707
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|393215976|gb|EJD01467.1| hypothetical protein FOMMEDRAFT_69260, partial [Fomitiporia
mediterranea MF3/22]
Length = 191
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 62 GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHKDFSS 120
GSA FG TK + SV GP E + A+ ++ ++ A P+ G G++ K +S
Sbjct: 15 GSARFGFGQTKALASVSGPIEVRLAVEQAS------KATFEVIARPLAGLPGTESKALAS 68
Query: 121 MLHKALEGAIILETFPKTTVDVFA 144
L AL ++IL P+T V + A
Sbjct: 69 ALRSALLPSMILTNNPRTLVQLVA 92
>gi|384250624|gb|EIE24103.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 293
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV---FG-PRESKKAMMYS 90
D LR D R RP G + SGSA GNT+V+V V G P E
Sbjct: 16 DDLREDGRSCRDVRPLKLALGVLQQCSGSARCSLGNTEVLVGVKVEIGVPLEETP----- 70
Query: 91 NIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALE 127
+ G L V + A P QG +D L K+LE
Sbjct: 71 DCGGLQVTVECSPCAGP-SYQGKSGEDLGVELTKSLE 106
>gi|451346958|ref|YP_007445589.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens IT-45]
gi|449850716|gb|AGF27708.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens IT-45]
Length = 707
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|38234421|ref|NP_940188.1| ribonuclease PH [Corynebacterium diphtheriae NCTC 13129]
gi|61215954|sp|Q6NFN6.1|RNPH_CORDI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|38200684|emb|CAE50380.1| Putative ribonuclease PH [Corynebacterium diphtheriae]
Length = 241
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV---FG----PRESKKAM 87
D+ R D R Q R G ++ +GS EFGNT+V+ + G R+S +
Sbjct: 3 DFSRADGRAVDQMRTVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGW 62
Query: 88 MYSNIGRLNCNVSYTTFATPIRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
+ + L + +RG +G H+ S ++ ++L A+ L+ + T+++
Sbjct: 63 LTAEYAMLPAATAERNARESMRGKVKGRTHE-ISRLIGRSLRAAVDLDELGENTINIDCD 121
Query: 146 VLESGG 151
VL++ G
Sbjct: 122 VLQADG 127
>gi|375362314|ref|YP_005130353.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|421731659|ref|ZP_16170782.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|371568308|emb|CCF05158.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|407073872|gb|EKE46862.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens subsp. plantarum M27]
Length = 707
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|71410043|ref|XP_807336.1| exosome-associated protein 4 [Trypanosoma cruzi strain CL Brener]
gi|70871314|gb|EAN85485.1| exosome-associated protein 4, putative [Trypanosoma cruzi]
Length = 229
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 63 SAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDH------- 115
SA E GNT+VI +V P++ S GR+ C V + A GS
Sbjct: 29 SACVELGNTRVICAVHHPQQLVDEYRGSR-GRVACTVRRSASAGS-HSAGSAQPSVVTPE 86
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVL-ESGG 151
KD S L E +ILE P+ V+V +L E GG
Sbjct: 87 KDMSLALEGVAEEVVILEKIPQLLVEVVVEILAEDGG 123
>gi|384159348|ref|YP_005541421.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens TA208]
gi|384164217|ref|YP_005545596.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
LL3]
gi|384168395|ref|YP_005549773.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens XH7]
gi|328553436|gb|AEB23928.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens TA208]
gi|328911772|gb|AEB63368.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
LL3]
gi|341827674|gb|AEK88925.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens XH7]
Length = 707
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|308173632|ref|YP_003920337.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
DSM 7]
gi|307606496|emb|CBI42867.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
DSM 7]
Length = 705
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|88861108|ref|ZP_01135742.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas tunicata
D2]
gi|88816830|gb|EAR26651.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas tunicata
D2]
Length = 237
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP R +Q RP F A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPSERTLNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWIT 60
Query: 90 SNIGRLNCNVSYTTFATPIRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L + RG+ S + ++ ++L A+ L+ + T+ + V++
Sbjct: 61 AEYGMLPRSTHTRCDREAARGKQSGRTMEIQRLIARSLRAAVDLKALGENTITIDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|375291476|ref|YP_005126016.1| ribonuclease PH [Corynebacterium diphtheriae 241]
gi|375293675|ref|YP_005128215.1| ribonuclease PH [Corynebacterium diphtheriae INCA 402]
gi|376246313|ref|YP_005136552.1| ribonuclease PH [Corynebacterium diphtheriae HC01]
gi|376251901|ref|YP_005138782.1| ribonuclease PH [Corynebacterium diphtheriae HC03]
gi|376257714|ref|YP_005145605.1| ribonuclease PH [Corynebacterium diphtheriae VA01]
gi|419861397|ref|ZP_14384033.1| ribonuclease PH [Corynebacterium diphtheriae bv. intermedius str.
NCTC 5011]
gi|371581147|gb|AEX44814.1| ribonuclease PH [Corynebacterium diphtheriae 241]
gi|371583347|gb|AEX47013.1| ribonuclease PH [Corynebacterium diphtheriae INCA 402]
gi|372108943|gb|AEX75004.1| ribonuclease PH [Corynebacterium diphtheriae HC01]
gi|372113405|gb|AEX79464.1| ribonuclease PH [Corynebacterium diphtheriae HC03]
gi|372120231|gb|AEX83965.1| ribonuclease PH [Corynebacterium diphtheriae VA01]
gi|387982126|gb|EIK55637.1| ribonuclease PH [Corynebacterium diphtheriae bv. intermedius str.
NCTC 5011]
Length = 241
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGP---RESKKAM 87
D+ R D R Q R G ++ +GS EFGNT+V+ V + P R+S +
Sbjct: 3 DFSRADGRAVDQMRTVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGW 62
Query: 88 MYSNIGRLNCNVSYTTFATPIRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
+ + L + +RG +G H + S ++ ++L A+ L+ + T+++
Sbjct: 63 LTAEYAMLPAATAERNARESMRGKVKGRTH-EISRLIGRSLRAAVDLDELGENTINIDCD 121
Query: 146 VLESGG 151
VL++ G
Sbjct: 122 VLQADG 127
>gi|427708466|ref|YP_007050843.1| RNAse PH [Nostoc sp. PCC 7107]
gi|427360971|gb|AFY43693.1| RNAse PH [Nostoc sp. PCC 7107]
Length = 246
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R ++ RP F++G A GS A+ G+T+V+ +V + + S G L
Sbjct: 3 WQRPDGRQPYELRPVSFQSGFTRFAPGSVLAKCGDTQVLCNVSINEGVPRFLNGSGKGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
AT R + K + ++ ++L I E + T+ V A VL++
Sbjct: 63 TAEYRMLPAATQQRQERELLKLSGRTQEIQRLIGRSLRATIDFEALGERTITVDADVLQA 122
>gi|294495472|ref|YP_003541965.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii
DSM 5219]
gi|292666471|gb|ADE36320.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii
DSM 5219]
Length = 261
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
R D R F++ R TG ++ A GSA ++G+T+V+V V
Sbjct: 24 REDGRQFNELRDIALETGIIDKAEGSAMVQYGDTQVMVGV 63
>gi|159128917|gb|EDP54031.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus fumigatus A1163]
Length = 269
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-------AMMY 89
LR D R +++ R + ++SGS++ GNT ++ SV GP E K+ A
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 90 SNIGRLNCNVS-YTTFATPIRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ ++ N++ + R GSD + +++L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNIAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 147 LESGG 151
L + G
Sbjct: 134 LSADG 138
>gi|449542307|gb|EMD33286.1| hypothetical protein CERSUDRAFT_56975 [Ceriporiopsis subvermispora
B]
Length = 278
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R ++ R SA G A G T+V VSVFGPRE+K ++ + LN
Sbjct: 24 RSDGRRQYELRDITIDMTPQGSADGCASIAHGLTQVSVSVFGPREAKQRSQTLHDRAVLN 83
Query: 97 CNVSYTTFATPIRGQGSDHK-------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
V+ F+T G+ + ++ + E + +P+ +D+F V +
Sbjct: 84 VEVNVLPFST---GERRRRGRADRRILELAASIKATFEPVVQTTLYPRAQIDIFVSVQQQ 140
Query: 150 GG 151
G
Sbjct: 141 DG 142
>gi|258651924|ref|YP_003201080.1| ribonuclease PH [Nakamurella multipartita DSM 44233]
gi|258555149|gb|ACV78091.1| ribonuclease PH [Nakamurella multipartita DSM 44233]
Length = 246
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESKKAMMYSNIG 93
R D R H+ RP F G +GS EFG TKV+ V+ PR K S +G
Sbjct: 3 RADGRADHELRPVTFTRGFQQHPAGSVLVEFGGTKVLCAASVTTGVPRWRKG----SGLG 58
Query: 94 RLNCNVSYTTFAT-------PIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
L + AT ++G+ G + S ++ ++L + L + + T+ V
Sbjct: 59 WLTAEYAMLPSATHERSDRESVKGRVGGRTHEISRLIGRSLRACLDLRSLGENTIAVDCD 118
Query: 146 VLESGG 151
VL++ G
Sbjct: 119 VLQADG 124
>gi|308800668|ref|XP_003075115.1| putative exonuclease RRP41 (ISS) [Ostreococcus tauri]
gi|116061669|emb|CAL52387.1| putative exonuclease RRP41 (ISS) [Ostreococcus tauri]
Length = 321
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 53/126 (42%), Gaps = 10/126 (7%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK---KAMMYSN 91
+ LR D R ++ R GSA E GNT + V GP E K S
Sbjct: 58 EGLRLDGRRANEIRRPRHAFAIDAQCDGSARFELGNTVIECRVDGPSERKFGGAEEGASE 117
Query: 92 IGRLNCNVSYTTFATP-----IRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
L C+ + FA+ +G G K F S+L KAL A+ ++ P+ V V V
Sbjct: 118 ACALTCSHGRSAFASDGVQAGRKGDGRS-KQFESVLAKALTSAVCVDLMPRCEVQVRTTV 176
Query: 147 L-ESGG 151
L + GG
Sbjct: 177 LCDDGG 182
>gi|407919986|gb|EKG13205.1| Exoribonuclease phosphorolytic domain 1 [Macrophomina phaseolina
MS6]
Length = 256
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK 85
LR D R +++ R + +A GS+Y E GNTKV+ +V GP E ++
Sbjct: 13 LRLDGRRWNELRRLQAQISTQAAADGSSYLEMGNTKVMCTVTGPYEGRR 61
>gi|353239012|emb|CCA70939.1| related to Exosome complex exonuclease RRP43 [Piriformospora
indica DSM 11827]
Length = 279
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
+ LRPD R CRP TG++++A GSA G T ++ V
Sbjct: 22 EHLRPDGRRPLDCRPLELTTGSISTADGSALVRLGETTIVCGV 64
>gi|346971917|gb|EGY15369.1| exosome complex exonuclease RRP41 [Verticillium dahliae VdLs.17]
Length = 275
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK---AMMYSNIG 93
LR D R +++ R + ++A GS+Y E G+TKV+ V GP E ++ A S
Sbjct: 13 LRVDGRRWNELRRLQAQIRTQDAADGSSYLEIGHTKVMCVVTGPTEPQRRGPAGGQSKDA 72
Query: 94 RLNCNVSYTTFATPIRGQ-GSDHKDFSSM---LHKALEGAIILETFPKTTVDVFALVLES 149
+N ++ F++ R + G + K S + + KA + FP +++ + VL
Sbjct: 73 AVNVSIVVAGFSSVDRRKYGRNDKRISELEATVSKAFASTLHTHLFPHSSIYISLHVLSQ 132
Query: 150 GG 151
G
Sbjct: 133 DG 134
>gi|311277436|ref|YP_003939667.1| ribonuclease PH [Enterobacter cloacae SCF1]
gi|308746631|gb|ADO46383.1| ribonuclease PH [Enterobacter cloacae SCF1]
Length = 238
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R HQ RP A GS EFG+TKV+ + + + G +
Sbjct: 1 MRPAGRSAHQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 97 CNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ +AL A+ L+T + T+ + V++
Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|31792536|ref|NP_855029.1| ribonuclease PH [Mycobacterium bovis AF2122/97]
gi|59798839|sp|Q7U076.1|RNPH_MYCBO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|31618125|emb|CAD94236.1| PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase)
[Mycobacterium bovis AF2122/97]
Length = 259
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R H+ RP G + +GS EFG+TKV+ + + + +G L
Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
Query: 98 NVSYTTFAT-------PIRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT +RG+ S ++ S ++ ++L I L + T+ + VL++
Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLISRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 150 GG 151
G
Sbjct: 124 DG 125
>gi|409096212|ref|ZP_11216236.1| exosome complex RNA-binding protein Rrp42 [Thermococcus zilligii
AN1]
Length = 276
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV---FG---PRESKKAMM 88
D R D RG R RTG + A GSA + G+T V+V V FG P ++ +M
Sbjct: 21 DGKRLDGRGLEDYRNIEIRTGLIEKAEGSALVKLGDTMVLVGVKVEFGEPFPDLPERGVM 80
Query: 89 YSNI 92
+N+
Sbjct: 81 TTNV 84
>gi|348677627|gb|EGZ17444.1| hypothetical protein PHYSODRAFT_499334 [Phytophthora sojae]
Length = 170
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ RP GA+ A GSA G++ V+ SV+GP +++ +
Sbjct: 8 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLASVYGPGQARN-WRAEKTDKATL 66
Query: 98 NVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+V F S +++ ++ + ++ ++FP+ + + V+E G
Sbjct: 67 DV---CFKLEKGITTSKEREYEQIIRETFTPVVLTDSFPRAVISIVVQVIEDNG 117
>gi|255713226|ref|XP_002552895.1| KLTH0D03960p [Lachancea thermotolerans]
gi|238934275|emb|CAR22457.1| KLTH0D03960p [Lachancea thermotolerans CBS 6340]
Length = 243
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGN-------TKVIVSVFGPRESKKAMMYS 90
+P ++ + + G V++A+GS+Y E T ++ SV+GPR S+ A +S
Sbjct: 31 QPPQEKNNENESMYIKNGLVSNANGSSYLELKRGESSEQCTILLSSVYGPRPSRGA--FS 88
Query: 91 NIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
+ L+ T G+ K+ + L I LE +PK+ +D+F
Sbjct: 89 SKASLSVQFKEVTIEKIPSGE---LKEICNFLSNIFSAVINLERYPKSGIDIF 138
>gi|302404108|ref|XP_002999892.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum
VaMs.102]
gi|261361394|gb|EEY23822.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum
VaMs.102]
Length = 155
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK---AMMYSNIG 93
LR D R +++ R + ++A GS+Y E G+TKV+ V GP E ++ A S
Sbjct: 13 LRVDGRRWNELRRLQAQIRTQDAADGSSYLEIGHTKVMCVVTGPTEPQRRGPAGGQSKDA 72
Query: 94 RLNCNVSYTTFATPIRGQ-GSDHKDFSSM---LHKALEGAIILETFPKTTVDVFALVLES 149
+N ++ F++ R + G + K S + + KA + FP +++ + VL
Sbjct: 73 AVNVSIVVAGFSSVDRRKYGRNDKRISELEATVSKAFASTLHTHLFPHSSIYISLHVLSQ 132
Query: 150 GG 151
G
Sbjct: 133 DG 134
>gi|288930698|ref|YP_003434758.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
gi|288892946|gb|ADC64483.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
Length = 259
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
R D R F + R +TG + A GSA + GNT+V+V V
Sbjct: 23 RIDGRKFDEIRKIEIQTGVIEKAEGSALVKLGNTQVLVGV 62
>gi|386714382|ref|YP_006180705.1| polyribonucleotide nucleotidyltransferase [Halobacillus halophilus
DSM 2266]
gi|384073938|emb|CCG45431.1| polyribonucleotide nucleotidyltransferase [Halobacillus halophilus
DSM 2266]
Length = 707
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 18/130 (13%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGP------------R 81
D +RPD RG + R R G + GS G T+ + V G
Sbjct: 313 DKVRPDGRGVDEIRSLTSRVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLDLE 372
Query: 82 ESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
ESK+ M + N + + + PIRG G ++ +ALE I ET T+
Sbjct: 373 ESKRFMHHYNFPKFSVGET-----GPIRGPGRREIGHGALGERALEVVIPSETEFPYTIR 427
Query: 142 VFALVLESGG 151
+ + VLES G
Sbjct: 428 LVSEVLESNG 437
>gi|72041533|ref|XP_796992.1| PREDICTED: exosome complex component RRP43-like
[Strongylocentrotus purpuratus]
Length = 275
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP------RESKKAMMYS 90
+RPD R + R G++++A GSA + GNT V+ + G E KK +
Sbjct: 22 VRPDGRELGEIRSTILNVGSISTAHGSALVKLGNTTVVCGIKGEFASPTVEEPKKGYLVP 81
Query: 91 NI 92
N+
Sbjct: 82 NV 83
>gi|70989313|ref|XP_749506.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Aspergillus fumigatus Af293]
gi|66847137|gb|EAL87468.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus fumigatus Af293]
Length = 269
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-------AMMY 89
LR D R +++ R + ++SGS++ GNT ++ SV GP E K+ A
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 90 SNIGRLNCNVS-YTTFATPIRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ ++ N++ + R GSD + +++L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNIAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 147 LESGG 151
L + G
Sbjct: 134 LSADG 138
>gi|109900580|ref|YP_663835.1| ribonuclease PH [Pseudoalteromonas atlantica T6c]
gi|410629314|ref|ZP_11340018.1| ribonuclease PH [Glaciecola mesophila KMM 241]
gi|123063997|sp|Q15MV7.1|RNPH_PSEA6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|109702861|gb|ABG42781.1| RNAse PH [Pseudoalteromonas atlantica T6c]
gi|410151110|dbj|GAC26787.1| ribonuclease PH [Glaciecola mesophila KMM 241]
Length = 237
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP+ R Q RP A GS EFGNTKV+ + + M G +N
Sbjct: 1 MRPNDRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASVTEGVPRFMKGQGKGWVN 60
Query: 97 CNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
S AT R QG + ++ ++L A+ L+ + T+ V V++
Sbjct: 61 AEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTIVVDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|312071046|ref|XP_003138427.1| 3' exoribonuclease [Loa loa]
gi|307766409|gb|EFO25643.1| 3' exoribonuclease [Loa loa]
Length = 307
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAM-MYSNIGRL 95
LR D R RP +TG + + +GSA G+T +++ V S + + +Y N RL
Sbjct: 21 LRADGRSPFDYRPVIVQTGVLATTNGSARVRIGSTDLLIGVKAELISVENIALYRN--RL 78
Query: 96 NCNVSYTTFATPI-RGQGSDHKDFSSMLHKALEGA 129
N V + ATP+ G+G + +F+ L AL+ A
Sbjct: 79 NFFVDCSANATPLFAGRGGE--EFADELSAALDAA 111
>gi|289574006|ref|ZP_06454233.1| ribonuclease rphA [Mycobacterium tuberculosis K85]
gi|339631409|ref|YP_004723051.1| ribonuclease PH [Mycobacterium africanum GM041182]
gi|289538437|gb|EFD43015.1| ribonuclease rphA [Mycobacterium tuberculosis K85]
gi|339330765|emb|CCC26436.1| putative ribonuclease RPHA (RNase PH) (tRNA nucleotidyltransferase)
[Mycobacterium africanum GM041182]
Length = 259
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R H+ RP G + +GS EFG+TKV+ + + + +G L
Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
Query: 98 NVSYTTFAT-------PIRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT +RG+ S ++ S ++ ++L I L + T+ + VL++
Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 150 GG 151
G
Sbjct: 124 DG 125
>gi|333986696|ref|YP_004519303.1| 3' exoribonuclease [Methanobacterium sp. SWAN-1]
gi|333824840|gb|AEG17502.1| 3' exoribonuclease [Methanobacterium sp. SWAN-1]
Length = 263
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 26 PPIFSGSDVDWL----RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
P I S V+ + R D R F + R TG ++ A GSA + GNT+++V V
Sbjct: 6 PEIIRESVVNLIKEGKRTDGRAFDEYREISLETGVIDKAEGSARVKIGNTQIMVGV 61
>gi|156363851|ref|XP_001626253.1| predicted protein [Nematostella vectensis]
gi|156213123|gb|EDO34153.1| predicted protein [Nematostella vectensis]
Length = 276
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
+RPD RG R G++++A+GSA + GNT V+ V
Sbjct: 22 IRPDGRGLFDFRETILNVGSISTANGSALVKLGNTTVVCGV 62
>gi|15608480|ref|NP_215856.1| Probable ribonuclease RphA (RNase PH) (tRNA nucleotidyltransferase)
[Mycobacterium tuberculosis H37Rv]
gi|15840795|ref|NP_335832.1| ribonuclease PH [Mycobacterium tuberculosis CDC1551]
gi|121637271|ref|YP_977494.1| ribonuclease PH [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|148661129|ref|YP_001282652.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
gi|148822561|ref|YP_001287315.1| ribonuclease PH [Mycobacterium tuberculosis F11]
gi|167969088|ref|ZP_02551365.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
gi|224989745|ref|YP_002644432.1| ribonuclease PH [Mycobacterium bovis BCG str. Tokyo 172]
gi|253799612|ref|YP_003032613.1| ribonuclease PH [Mycobacterium tuberculosis KZN 1435]
gi|254364236|ref|ZP_04980282.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis str.
Haarlem]
gi|254550352|ref|ZP_05140799.1| ribonuclease PH [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|289442782|ref|ZP_06432526.1| ribonuclease PH [Mycobacterium tuberculosis T46]
gi|289446935|ref|ZP_06436679.1| ribonuclease rphA [Mycobacterium tuberculosis CPHL_A]
gi|289569353|ref|ZP_06449580.1| ribonuclease rphA [Mycobacterium tuberculosis T17]
gi|289745092|ref|ZP_06504470.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987]
gi|289749896|ref|ZP_06509274.1| ribonuclease rphA [Mycobacterium tuberculosis T92]
gi|289753422|ref|ZP_06512800.1| ribonuclease rphA [Mycobacterium tuberculosis EAS054]
gi|289757445|ref|ZP_06516823.1| ribonuclease rphA [Mycobacterium tuberculosis T85]
gi|289761501|ref|ZP_06520879.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis GM 1503]
gi|294994898|ref|ZP_06800589.1| ribonuclease PH [Mycobacterium tuberculosis 210]
gi|297633893|ref|ZP_06951673.1| ribonuclease PH [Mycobacterium tuberculosis KZN 4207]
gi|297730881|ref|ZP_06959999.1| ribonuclease PH [Mycobacterium tuberculosis KZN R506]
gi|298524847|ref|ZP_07012256.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A]
gi|306775519|ref|ZP_07413856.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu001]
gi|306780669|ref|ZP_07419006.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu002]
gi|306784070|ref|ZP_07422392.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu003]
gi|306788431|ref|ZP_07426753.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu004]
gi|306792760|ref|ZP_07431062.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu005]
gi|306797164|ref|ZP_07435466.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu006]
gi|306803043|ref|ZP_07439711.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu008]
gi|306807237|ref|ZP_07443905.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu007]
gi|306967434|ref|ZP_07480095.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu009]
gi|307079339|ref|ZP_07488509.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu011]
gi|307083904|ref|ZP_07493017.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu012]
gi|313658214|ref|ZP_07815094.1| ribonuclease PH [Mycobacterium tuberculosis KZN V2475]
gi|375296853|ref|YP_005101120.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 4207]
gi|378771105|ref|YP_005170838.1| ribonuclease [Mycobacterium bovis BCG str. Mexico]
gi|383307209|ref|YP_005360020.1| ribonuclease PH [Mycobacterium tuberculosis RGTB327]
gi|385990766|ref|YP_005909064.1| rph, ribonuclease PH [Mycobacterium tuberculosis CCDC5180]
gi|385994366|ref|YP_005912664.1| rph, ribonuclease PH [Mycobacterium tuberculosis CCDC5079]
gi|385998125|ref|YP_005916423.1| ribonuclease PH [Mycobacterium tuberculosis CTRI-2]
gi|386004327|ref|YP_005922606.1| ribonuclease PH [Mycobacterium tuberculosis RGTB423]
gi|392386031|ref|YP_005307660.1| rphA [Mycobacterium tuberculosis UT205]
gi|392433064|ref|YP_006474108.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 605]
gi|397673183|ref|YP_006514718.1| ribonuclease PH [Mycobacterium tuberculosis H37Rv]
gi|422812329|ref|ZP_16860717.1| ribonuclease rphA [Mycobacterium tuberculosis CDC1551A]
gi|424803687|ref|ZP_18229118.1| ribonuclease rphA [Mycobacterium tuberculosis W-148]
gi|424947081|ref|ZP_18362777.1| ribonuclease PH [Mycobacterium tuberculosis NCGM2209]
gi|449063414|ref|YP_007430497.1| ribonuclease PH [Mycobacterium bovis BCG str. Korea 1168P]
gi|1710618|sp|Q10628.1|RNPH_MYCTU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228291|sp|A1KID0.1|RNPH_MYCBP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228295|sp|A5U240.1|RNPH_MYCTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254808595|sp|C1AMY5.1|RNPH_MYCBT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|13880990|gb|AAK45646.1| ribonuclease PH [Mycobacterium tuberculosis CDC1551]
gi|121492918|emb|CAL71389.1| Probable ribonuclease rphA [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|134149750|gb|EBA41795.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis str.
Haarlem]
gi|148505281|gb|ABQ73090.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
gi|148721088|gb|ABR05713.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis F11]
gi|224772858|dbj|BAH25664.1| ribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
gi|253321115|gb|ACT25718.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 1435]
gi|289415701|gb|EFD12941.1| ribonuclease PH [Mycobacterium tuberculosis T46]
gi|289419893|gb|EFD17094.1| ribonuclease rphA [Mycobacterium tuberculosis CPHL_A]
gi|289543107|gb|EFD46755.1| ribonuclease rphA [Mycobacterium tuberculosis T17]
gi|289685620|gb|EFD53108.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987]
gi|289690483|gb|EFD57912.1| ribonuclease rphA [Mycobacterium tuberculosis T92]
gi|289694009|gb|EFD61438.1| ribonuclease rphA [Mycobacterium tuberculosis EAS054]
gi|289709007|gb|EFD73023.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis GM 1503]
gi|289713009|gb|EFD77021.1| ribonuclease rphA [Mycobacterium tuberculosis T85]
gi|298494641|gb|EFI29935.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A]
gi|308215991|gb|EFO75390.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu001]
gi|308326498|gb|EFP15349.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu002]
gi|308331139|gb|EFP19990.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu003]
gi|308334980|gb|EFP23831.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu004]
gi|308338786|gb|EFP27637.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu005]
gi|308342427|gb|EFP31278.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu006]
gi|308346338|gb|EFP35189.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu007]
gi|308350261|gb|EFP39112.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu008]
gi|308354910|gb|EFP43761.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu009]
gi|308362791|gb|EFP51642.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu011]
gi|308366438|gb|EFP55289.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu012]
gi|323720157|gb|EGB29260.1| ribonuclease rphA [Mycobacterium tuberculosis CDC1551A]
gi|326902963|gb|EGE49896.1| ribonuclease rphA [Mycobacterium tuberculosis W-148]
gi|328459358|gb|AEB04781.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 4207]
gi|339294320|gb|AEJ46431.1| rph, ribonuclease PH [Mycobacterium tuberculosis CCDC5079]
gi|339297959|gb|AEJ50069.1| rph, ribonuclease PH [Mycobacterium tuberculosis CCDC5180]
gi|341601289|emb|CCC63962.1| probable ribonuclease rphA [Mycobacterium bovis BCG str. Moreau
RDJ]
gi|344219171|gb|AEM99801.1| ribonuclease PH [Mycobacterium tuberculosis CTRI-2]
gi|356593426|gb|AET18655.1| Ribonuclease [Mycobacterium bovis BCG str. Mexico]
gi|358231596|dbj|GAA45088.1| ribonuclease PH [Mycobacterium tuberculosis NCGM2209]
gi|378544582|emb|CCE36856.1| rphA [Mycobacterium tuberculosis UT205]
gi|379027566|dbj|BAL65299.1| ribonuclease PH [Mycobacterium tuberculosis str. Erdman = ATCC
35801]
gi|380721162|gb|AFE16271.1| ribonuclease PH [Mycobacterium tuberculosis RGTB327]
gi|380724815|gb|AFE12610.1| ribonuclease PH [Mycobacterium tuberculosis RGTB423]
gi|392054473|gb|AFM50031.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 605]
gi|395138088|gb|AFN49247.1| ribonuclease PH [Mycobacterium tuberculosis H37Rv]
gi|440580818|emb|CCG11221.1| putative RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase)
[Mycobacterium tuberculosis 7199-99]
gi|444894842|emb|CCP44098.1| Probable ribonuclease RphA (RNase PH) (tRNA nucleotidyltransferase)
[Mycobacterium tuberculosis H37Rv]
gi|449031922|gb|AGE67349.1| ribonuclease PH [Mycobacterium bovis BCG str. Korea 1168P]
Length = 259
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R H+ RP G + +GS EFG+TKV+ + + + +G L
Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
Query: 98 NVSYTTFAT-------PIRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT +RG+ S ++ S ++ ++L I L + T+ + VL++
Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 150 GG 151
G
Sbjct: 124 DG 125
>gi|336122959|ref|YP_004565007.1| ribonuclease PH [Vibrio anguillarum 775]
gi|335340682|gb|AEH31965.1| Ribonuclease PH [Vibrio anguillarum 775]
Length = 238
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRAADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPIRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE P+ + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMPEVMITVDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|433641492|ref|YP_007287251.1| Putative ribonuclease RphA (RNase PH) (tRNA nucleotidyltransferase)
[Mycobacterium canettii CIPT 140070008]
gi|432158040|emb|CCK55327.1| Putative ribonuclease RphA (RNase PH) (tRNA nucleotidyltransferase)
[Mycobacterium canettii CIPT 140070008]
Length = 259
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R H+ RP G + +GS EFG+TKV+ + + + +G L
Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
Query: 98 NVSYTTFAT-------PIRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT +RG+ S ++ S ++ ++L I L + T+ + VL++
Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 150 GG 151
G
Sbjct: 124 DG 125
>gi|198426220|ref|XP_002120565.1| PREDICTED: similar to Exosome complex exonuclease RRP43
(Ribosomal RNA-processing protein 43) (Exosome
component 8) (p9) (Opa-interacting protein 2) [Ciona
intestinalis]
Length = 279
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP------RESKKAMMYS 90
+RPD+R Q R G + +A GSA + GNT V+ V E KK ++
Sbjct: 22 IRPDTRTLQQIRKTTLNVGPITTADGSALVKIGNTMVMCGVKAELTQPTAEEPKKGIIVP 81
Query: 91 NI 92
N+
Sbjct: 82 NL 83
>gi|160877892|pdb|3B4T|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
The Mycobacterium Tuberculosis Structural Genomics
Consortium Target Rv1340
gi|160877893|pdb|3B4T|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
The Mycobacterium Tuberculosis Structural Genomics
Consortium Target Rv1340
gi|160877894|pdb|3B4T|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
The Mycobacterium Tuberculosis Structural Genomics
Consortium Target Rv1340
gi|160877895|pdb|3B4T|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
The Mycobacterium Tuberculosis Structural Genomics
Consortium Target Rv1340
gi|160877896|pdb|3B4T|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
The Mycobacterium Tuberculosis Structural Genomics
Consortium Target Rv1340
gi|160877897|pdb|3B4T|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
The Mycobacterium Tuberculosis Structural Genomics
Consortium Target Rv1340
Length = 262
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R H+ RP G + +GS EFG+TKV+ + + + +G L
Sbjct: 7 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 66
Query: 98 NVSYTTFAT-------PIRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT +RG+ S ++ S ++ ++L I L + T+ + VL++
Sbjct: 67 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 126
Query: 150 GG 151
G
Sbjct: 127 DG 128
>gi|340626356|ref|YP_004744808.1| putative ribonuclease RPHA [Mycobacterium canettii CIPT 140010059]
gi|433626442|ref|YP_007260071.1| Putative ribonuclease RphA (RNase PH) (tRNA nucleotidyltransferase)
[Mycobacterium canettii CIPT 140060008]
gi|340004546|emb|CCC43690.1| putative ribonuclease RPHA (RNase PH) (tRNA nucleotidyltransferase)
[Mycobacterium canettii CIPT 140010059]
gi|432154048|emb|CCK51277.1| Putative ribonuclease RphA (RNase PH) (tRNA nucleotidyltransferase)
[Mycobacterium canettii CIPT 140060008]
Length = 259
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R H+ RP G + +GS EFG+TKV+ + + + +G L
Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
Query: 98 NVSYTTFAT-------PIRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT +RG+ S ++ S ++ ++L I L + T+ + VL++
Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 150 GG 151
G
Sbjct: 124 DG 125
>gi|365539848|ref|ZP_09365023.1| ribonuclease PH [Vibrio ordalii ATCC 33509]
Length = 238
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRAADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPIRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE P+ + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMPEVMITVDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|345565548|gb|EGX48497.1| hypothetical protein AOL_s00080g126 [Arthrobotrys oligospora ATCC
24927]
Length = 246
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 34 VDWLRPDSRGFHQCRPAFFR--TGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYS 90
++ LR D R +++ R + T + N A GS+Y E G TKV+ +V GP E S + +
Sbjct: 1 MEGLRNDGRRWNELRRIHCQLSTSSTN-ADGSSYIEQGFTKVLCNVTGPAEPSSRQKVKQ 59
Query: 91 NIGRLNCNVSYTTFATPIR-GQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ + C V + F+ R +G + K + + + K I+ F ++ + + +
Sbjct: 60 DAATVTCEVYFAAFSGTDRIKRGRNDKKVQELQTAIQKTFASVILTHLFSRSEITISIHI 119
Query: 147 LESGG 151
L G
Sbjct: 120 LSQDG 124
>gi|288560608|ref|YP_003424094.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
ruminantium M1]
gi|288543318|gb|ADC47202.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
ruminantium M1]
Length = 263
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D R D R F + R F ++ A GSA + G+T+VIV V P + N+G
Sbjct: 18 DGKRADGRAFDERRDIFIEPNVIDKAEGSARVKLGDTQVIVGV-KPTIGEPFADTPNLGV 76
Query: 95 LNCNVSYTTFATP 107
L N A P
Sbjct: 77 LMTNCELLPMAAP 89
>gi|255943151|ref|XP_002562344.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587077|emb|CAP94741.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 265
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK---AMMYSNIG 93
LR D R +++ R + ++SGS+Y GNT ++ SV GP E ++ S
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCSVHGPAEGRRGDGGSAGSGHA 73
Query: 94 RLNCNVSYTTFA---TPIRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ +V+ FA R GSD + ++ L A + + +P +T+ + VL
Sbjct: 74 VVEVDVNVAGFAGVDRKRRAGGSDRQSSRIATTLRSAFQSHLHTYLYPHSTISIHVSVLS 133
Query: 149 SGG 151
+ G
Sbjct: 134 ADG 136
>gi|159040755|ref|YP_001540007.1| exosome complex RNA-binding protein Rrp42 [Caldivirga
maquilingensis IC-167]
gi|157919590|gb|ABW01017.1| 3' exoribonuclease [Caldivirga maquilingensis IC-167]
Length = 279
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
RPD R R R G + +A GSA GNTKVI +
Sbjct: 26 RPDDRQLISMRDLTIRVGVIKTADGSALVNLGNTKVIAGI 65
>gi|440783427|ref|ZP_20961145.1| ribonuclease PH [Clostridium pasteurianum DSM 525]
gi|440219567|gb|ELP58779.1| ribonuclease PH [Clostridium pasteurianum DSM 525]
Length = 249
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+R D R F Q RP A GS Y E G+TKVI +V + + G +
Sbjct: 1 MRFDGRKFDQIRPVNIVRNYTKYADGSVYIEVGDTKVICNVSIEEKVPLFLRGKGEGWIT 60
Query: 97 CNVSYTTFATPIRGQGSDHK--------DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
C S AT IR K + ++ + L + L+ + T+ V V++
Sbjct: 61 CEYSMLPRATQIRKMRDITKGKIDGRTVEIQRLIGRTLRSVVDLKALGEKTLWVDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|410671928|ref|YP_006924299.1| 3' exoribonuclease [Methanolobus psychrophilus R15]
gi|409171056|gb|AFV24931.1| 3' exoribonuclease [Methanolobus psychrophilus R15]
Length = 255
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
R D R F Q R T ++ A GSA+ ++G T+V+V V
Sbjct: 18 RVDDRSFDQVRDIALETNVIDKAEGSAWVKYGETEVLVGV 57
>gi|340793697|ref|YP_004759160.1| ribonuclease PH [Corynebacterium variabile DSM 44702]
gi|340533607|gb|AEK36087.1| ribonuclease PH [Corynebacterium variabile DSM 44702]
Length = 256
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGP---RESKKAM 87
D+ R D R + RP G + +GS EFGNT+V+ VS P R+S +
Sbjct: 5 DYTRFDGRAVDELRPVRITRGFTTNPAGSVLVEFGNTRVMCTASVSEGVPRFKRDSGEGW 64
Query: 88 MYSNIGRLNCNVSYTTFATPIRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
+ + L + ++G +G H+ S ++ ++L A+ L + TV++
Sbjct: 65 LTAEYAMLPSATAERMPREALKGKVKGRTHE-ISRLIGRSLRAAVDLRALGENTVNIDCD 123
Query: 146 VLESGG 151
VL++ G
Sbjct: 124 VLQADG 129
>gi|453364193|dbj|GAC80042.1| ribonuclease PH [Gordonia malaquae NBRC 108250]
Length = 251
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ RP F G + +GS EFGNT+V+ + S +G L
Sbjct: 4 RADGRADNELRPIKFTRGFTSHPAGSVLVEFGNTRVMCTASVNEGVPSWRRGSGLGWLTA 63
Query: 98 NVSYTTFAT-------PIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT +RG+ G + S ++ ++L I L + T+ + VL++
Sbjct: 64 EYSMLPAATHERNKRESVRGKIGGRTHEISRLVGRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 150 GG 151
G
Sbjct: 124 DG 125
>gi|302882007|ref|XP_003039914.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
77-13-4]
gi|256720781|gb|EEU34201.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
77-13-4]
Length = 268
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 25/133 (18%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAM-----MYS 90
LR D R +++ R + ++A GS+Y E G+TKV+ V GP E +
Sbjct: 12 LLRVDGRRWNELRRLNAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQGQQQRRVQTAQR 71
Query: 91 NIGRLNCNVSYTTFATPIRGQ-GSDHKD-----------FSSMLHKALEGAIILETFPKT 138
++ +N NV F++ R + G + K F+S LH L FP +
Sbjct: 72 DVAAINVNVVTAGFSSVDRKKRGRNDKRTQEIEVTIANAFASNLHTHL--------FPHS 123
Query: 139 TVDVFALVLESGG 151
++ + VL G
Sbjct: 124 SITISLHVLSQDG 136
>gi|294056535|ref|YP_003550193.1| ribonuclease PH [Coraliomargarita akajimensis DSM 45221]
gi|293615868|gb|ADE56023.1| ribonuclease PH [Coraliomargarita akajimensis DSM 45221]
Length = 252
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 20/39 (51%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVS 76
RPD R Q RP F TG A GS FG T+VI +
Sbjct: 11 RPDQRAVDQLRPIHFETGIAPHALGSVLVSFGQTRVICA 49
>gi|326473180|gb|EGD97189.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton tonsurans CBS 112818]
Length = 286
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R +++ R + ++SGS+Y GNT V+ +V GP E K++ G
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRS---ETAGAAA 70
Query: 97 CNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
TT + G D + + ++ L A + I +P++T+ V VL S G
Sbjct: 71 QKKKSTTGS-----GGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVSVLSSDG 123
>gi|224031563|gb|ACN34857.1| unknown [Zea mays]
gi|413932392|gb|AFW66943.1| hypothetical protein ZEAMMB73_899121 [Zea mays]
Length = 149
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + G
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRK------GENPE 60
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
S P GQ G +++ L + L+ +L P TT V V+
Sbjct: 61 KASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVM 111
>gi|408382268|ref|ZP_11179813.1| exosome complex RNA-binding protein Rrp42 [Methanobacterium
formicicum DSM 3637]
gi|407814924|gb|EKF85546.1| exosome complex RNA-binding protein Rrp42 [Methanobacterium
formicicum DSM 3637]
Length = 266
Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q R TG + A GSA + GNT++IV P+ + N+G L
Sbjct: 23 RADGRALDQYREVTIETGVIKKAEGSARVKIGNTQIIVGA-KPQIGEPFPDTPNVGVLIT 81
Query: 98 NVSYTTFATP 107
N A P
Sbjct: 82 NSELVPMAAP 91
>gi|449542303|gb|EMD33282.1| hypothetical protein CERSUDRAFT_76538 [Ceriporiopsis subvermispora
B]
Length = 267
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R ++ R SA G A G T+V VSVFGPRE+K ++ + LN
Sbjct: 14 RSDGRRQYELRDITIDMTPQGSADGCASIAHGLTQVSVSVFGPREAKQRSQTLHDRAVLN 73
Query: 97 CNVSYTTFATPIRGQGSDHK-------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
V+ F+T G+ + ++ + E + +P+ +D+F V +
Sbjct: 74 VEVNVLPFST---GERRRRGRADRRILELAASIKATFEPVVQTTLYPRAQIDIFVSVQQQ 130
Query: 150 GG 151
G
Sbjct: 131 DG 132
>gi|268570481|ref|XP_002640755.1| C. briggsae CBR-ARX-4 protein [Caenorhabditis briggsae]
Length = 539
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 32 SDVDWLRPDSRGFHQ-----CRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP 80
S VD R D+ Q RP + G + GS YAEFGNT+V+ + GP
Sbjct: 16 SRVDDDRMDTEEVEQRSSTAFRPLSVKCGVFGAQDGSGYAEFGNTRVLAQILGP 69
>gi|433456683|ref|ZP_20414717.1| ribonuclease PH [Arthrobacter crystallopoietes BAB-32]
gi|432195898|gb|ELK52395.1| ribonuclease PH [Arthrobacter crystallopoietes BAB-32]
Length = 261
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+R D R Q RP G N A GSA EFGNT+V+ V+ PR K + +
Sbjct: 14 VRADGRSPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASVTAGVPRWLKGEGRGWVT 73
Query: 90 SNIGRLNCNVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ L + + ++G+ G + S ++ ++L I L+ + T+ + VL+
Sbjct: 74 AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDLKALGENTIVLDCDVLQ 133
Query: 149 SGG 151
+ G
Sbjct: 134 ADG 136
>gi|76155868|gb|AAX27138.2| SJCHGC06185 protein [Schistosoma japonicum]
Length = 251
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R ++ R + G+ NS G + GNTKVI SV GP + K + +
Sbjct: 3 RVDGRRPNELRRVHCQFGSGNS-DGIVFLHQGNTKVIASVVGPHAPRTKGDGNPDGATII 61
Query: 97 CNVSYTTFAT------PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
C + FA+ + DFS+ + + + E +P + +D+F V++S
Sbjct: 62 CQFTKPPFASTSGERRKVASNDRSANDFSTAIEEIFSCVVRTEKYPMSQIDIFLEVIQSD 121
Query: 151 G 151
G
Sbjct: 122 G 122
>gi|410667487|ref|YP_006919858.1| polyribonucleotide nucleotidyltransferase Pnp [Thermacetogenium
phaeum DSM 12270]
gi|409105234|gb|AFV11359.1| polyribonucleotide nucleotidyltransferase Pnp [Thermacetogenium
phaeum DSM 12270]
Length = 707
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG + RP G + A GS G T+V I+ G ES
Sbjct: 313 VRPDGRGLEEIRPISCEVGILPRAHGSGLFTRGQTQVLTVATLGTISEEQILDGLGIEES 372
Query: 84 KKAMMYSNIGRLNCNVSYTTFAT-PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDV 142
K+ M + N Y+ T PIRG G ++ +AL + E T+ +
Sbjct: 373 KRYMHHYNFP------PYSVGETRPIRGPGRREIGHGALAERALLPVLPDEDKFPYTIRL 426
Query: 143 FALVLESGG 151
+ VLES G
Sbjct: 427 VSEVLESNG 435
>gi|427727742|ref|YP_007073979.1| ribonuclease PH [Nostoc sp. PCC 7524]
gi|427363661|gb|AFY46382.1| ribonuclease PH [Nostoc sp. PCC 7524]
Length = 245
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R ++ RP F+ A GS A G TKV+ +V K ++ + G L
Sbjct: 3 WQRPDGRKPYELRPVTFQPEFTRFAPGSVLAICGETKVLCTVSVAEGVPKFLLGTGKGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
AT R + K + ++ ++L AI E + T+ V A VL++
Sbjct: 63 TAEYRMLPSATQQRQERELMKLSGRTQEIQRLIGRSLRAAIDFEALGERTLTVDADVLQA 122
>gi|206889521|ref|YP_002249186.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347]
gi|226736948|sp|B5YFY8.1|RNPH_THEYD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|206741459|gb|ACI20516.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 236
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP-------RESKKAMMY 89
+RPD R + RP + +A GS E GNT+VI + ++ KK +
Sbjct: 1 MRPDGRKNDELRPIKIEKNFIKNADGSVLIELGNTRVICTASIENKVPPFLKDQKKGWIT 60
Query: 90 SNIGRL--NCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
+ G L + V +T R G H + ++ + L + LE + T+ + V+
Sbjct: 61 AEYGMLPRSTPVRMLRESTSGRVGGRTH-EIQRLIGRTLRAVVDLEKLGERTIWIDCDVI 119
Query: 148 ESGG 151
E+ G
Sbjct: 120 EADG 123
>gi|226504202|ref|NP_001146469.1| uncharacterized protein LOC100280057 [Zea mays]
gi|219887423|gb|ACL54086.1| unknown [Zea mays]
gi|413932389|gb|AFW66940.1| exosome complex exonuclease RRP46 [Zea mays]
Length = 240
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + G
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRK------GENPE 60
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S P GQ G +++ L + L+ +L P TT V V+ G
Sbjct: 61 KASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDG 115
>gi|124808870|ref|XP_001348430.1| exosome complex exonuclease rrp41, putative [Plasmodium falciparum
3D7]
gi|23497324|gb|AAN36869.1|AE014820_19 exosome complex exonuclease rrp41, putative [Plasmodium falciparum
3D7]
Length = 246
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 18/125 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNS---ASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
R D R +CR G N G ++ E GNTK+ + GP E ++
Sbjct: 13 RIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGPNEYRRP-------D 65
Query: 95 LNCNVSYTTFATPI------RGQGSDH--KDFSSMLHKALEGAIILETFPKTTVDVFALV 146
C V F +P R + D+ ++ SS + I+L+ + + +++F +
Sbjct: 66 EKCLVKCNVFLSPFNILEKKRKKSKDNVTREISSYIRNICNHIILLDLYKNSEINIFLYI 125
Query: 147 LESGG 151
+E G
Sbjct: 126 IERDG 130
>gi|407409247|gb|EKF32229.1| ribosomal RNA processing protein 41B, putative,3' exoribonuclease,
putative [Trypanosoma cruzi marinkellei]
Length = 280
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 22/131 (16%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D RGF + R RT + GSA+ G T V+ +V GP +++
Sbjct: 6 LRRDGRGFREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAARQEDYR------K 59
Query: 97 CNVS-YTTFATPI-RGQGSD-----------HK---DFSSMLHKALEGAIILETFPKTTV 140
C V Y A I R G+D H+ + L +++ + L+ FP+ +
Sbjct: 60 CGVQVYVNRAVRIPRAGGTDRICMEEQRVEQHRMDAELEMFLTTSIQAVVRLDQFPRCVL 119
Query: 141 DVFALVLESGG 151
+V +L G
Sbjct: 120 EVHITILAEDG 130
>gi|256072702|ref|XP_002572673.1| ribonuclease pH related [Schistosoma mansoni]
gi|360044228|emb|CCD81775.1| ribonuclease pH related [Schistosoma mansoni]
Length = 258
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 13/130 (10%)
Query: 29 FSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAM 87
++G VD RP+ C+ F +G + G + GNTKVI SV GP + K
Sbjct: 6 YNGRRVDGRRPNEIRRVDCQ---FGSGY---SDGIVFLHQGNTKVIASVVGPHAPRVKGD 59
Query: 88 MYSNIGRLNCNVSYTTFAT------PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
+ + C + FA+ + + DF++ + + I E +P + +D
Sbjct: 60 GTPDGATITCQFTKPPFASTSGERRKLSSKDRSANDFATAIEEIFSCVIRTEKYPMSQID 119
Query: 142 VFALVLESGG 151
+F V++S G
Sbjct: 120 IFLEVIQSDG 129
>gi|405119953|gb|AFR94724.1| exosome component Rrp41 [Cryptococcus neoformans var. grubii H99]
Length = 262
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSN----I 92
LR D+R ++ R F+ S+ GS+ A G T V VSVFGPRE + + S+ +
Sbjct: 14 LRQDARRPYELRSTSFQLSTHPSSDGSSTATQGLTTVAVSVFGPREPRNRGLASHDRAVV 73
Query: 93 GRLNCNVSYTTFATPIRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V + A R +G ++ + + + E I+ +P++ + + VL + G
Sbjct: 74 SVEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVLSADG 133
>gi|402587188|gb|EJW81123.1| 3' exoribonuclease, partial [Wuchereria bancrofti]
Length = 280
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAM-MYSNIGRLNCNVSYTTFAT 106
RP +TG + + +GSA + G+T +++ V S +++ +Y N RLN V + AT
Sbjct: 5 RPVIVQTGVLATTNGSARVQIGSTDLLIGVKAELISVESIAIYRN--RLNFFVDCSANAT 62
Query: 107 PI-RGQGSDHKDFSSMLHKALEGA 129
P+ G+G D +F+ L AL+ A
Sbjct: 63 PLFAGRGGD--EFADELSAALDAA 84
>gi|389815272|ref|ZP_10206618.1| polynucleotide phosphorylase/polyadenylase [Planococcus antarcticus
DSM 14505]
gi|388466051|gb|EIM08360.1| polynucleotide phosphorylase/polyadenylase [Planococcus antarcticus
DSM 14505]
Length = 705
Score = 39.7 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG + RP G +N GS G T+ I+ G ++
Sbjct: 313 IRPDGRGPSEIRPLSSEVGVLNRTHGSGLFTRGQTQAMSICTLGALGDVQIIDGLGIEDT 372
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N +V T F +RG G ++ +ALE I E T+ +
Sbjct: 373 KRFMHHYNFPLF--SVGETGF---LRGPGRREIGHGALGERALEAVIPNEKDFPYTIRLV 427
Query: 144 ALVLESGG 151
A VLES G
Sbjct: 428 AEVLESNG 435
>gi|312134722|ref|YP_004002060.1| ribonuclease ph [Caldicellulosiruptor owensensis OL]
gi|311774773|gb|ADQ04260.1| ribonuclease PH [Caldicellulosiruptor owensensis OL]
Length = 258
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVS 76
+R D RG+++ RP + A GS E GNTKVIV+
Sbjct: 1 MRQDQRGYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVT 40
>gi|443692453|gb|ELT94047.1| hypothetical protein CAPTEDRAFT_173435 [Capitella teleta]
Length = 277
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSN----- 91
+RPD R RP G++++A GSA + GNT ++ + K M+ SN
Sbjct: 22 VRPDGRDLGGIRPTTLNVGSIDTADGSALVKLGNTCILCGI------KAEMVASNPETPE 75
Query: 92 IGRLNCNVSYTTFATP 107
G ++ +VS +TP
Sbjct: 76 QGIVDSSVSLLPMSTP 91
>gi|326508906|dbj|BAJ86846.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
+RPD+R + RP GAV+SA GSA G+T ++ S+
Sbjct: 39 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASI 79
>gi|71410195|ref|XP_807405.1| ribosomal RNA processing protein 41B [Trypanosoma cruzi strain CL
Brener]
gi|70871397|gb|EAN85554.1| ribosomal RNA processing protein 41B, putative [Trypanosoma cruzi]
Length = 284
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 22/132 (16%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
LR D RG + R RT + GSA+ G T V+ +V GP +++
Sbjct: 5 LLRRDGRGHREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAARQEDYR------ 58
Query: 96 NCNVS-YTTFATPI-RGQGSDH--------------KDFSSMLHKALEGAIILETFPKTT 139
CNV Y A I R G+D + L +++ + L+ FP+
Sbjct: 59 KCNVQVYVNRAVRIPRAGGTDRLCVEEQRLEQQRMDAEVEMFLTASIQAVVRLDQFPRCV 118
Query: 140 VDVFALVLESGG 151
++V +L G
Sbjct: 119 LEVHVTILADDG 130
>gi|15678709|ref|NP_275825.1| exosome complex RNA-binding protein Rrp42 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336572|sp|O26778.1|ECX2_METTH RecName: Full=Probable exosome complex exonuclease 2
gi|295321489|pdb|2WNR|A Chain A, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321491|pdb|2WNR|C Chain C, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321493|pdb|2WNR|E Chain E, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|2621767|gb|AAB85187.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 271
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
R D R H+ R TG ++ A GS+ + GNT++IV V
Sbjct: 25 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGV 64
>gi|441523213|ref|ZP_21004843.1| ribonuclease PH [Gordonia sihwensis NBRC 108236]
gi|441457178|dbj|GAC62804.1| ribonuclease PH [Gordonia sihwensis NBRC 108236]
Length = 252
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + RP F G + +GS EFGNT+V+ + S +G L
Sbjct: 4 RADGRADDELRPIKFTRGFTSHPAGSVLVEFGNTRVMCTASVTEGVPSWRRGSGLGWLTA 63
Query: 98 NVSYTTFAT-------PIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT +RG+ G + S ++ ++L I L + T+ + VL++
Sbjct: 64 EYSMLPAATHERSKRESVRGKIGGRTHEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 150 GG 151
G
Sbjct: 124 DG 125
>gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Zea mays]
Length = 240
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + G
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRK------GENPE 60
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S P GQ G +++ L + L+ +L P TT V V+ G
Sbjct: 61 KASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDG 115
>gi|15614970|ref|NP_243273.1| polynucleotide phosphorylase/polyadenylase [Bacillus halodurans
C-125]
gi|81786500|sp|Q9KA83.1|PNP_BACHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|10175027|dbj|BAB06126.1| polynucleotide phosphorylase [Bacillus halodurans C-125]
Length = 704
Score = 39.3 bits (90), Expect = 0.50, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 18/131 (13%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGP 80
V+ +RPD R + RP + G + GS G T+ I+ G
Sbjct: 310 VEKIRPDGREIDEIRPLSSQVGILPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGI 369
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTV 140
ESK+ M + N + + + PIRG G ++ +ALE I E T+
Sbjct: 370 EESKRFMHHYNFPQFSVGET-----GPIRGPGRREIGHGALGERALEPVIPSEQDFPYTI 424
Query: 141 DVFALVLESGG 151
+ + VLES G
Sbjct: 425 RLVSEVLESNG 435
>gi|46138729|ref|XP_391055.1| hypothetical protein FG10879.1 [Gibberella zeae PH-1]
Length = 338
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 51/130 (39%), Gaps = 15/130 (11%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MA++ + + A+ Y + + RPPI RPD R Q RP TG +
Sbjct: 1 MASQQNLFSPAELAY--LHQSLSLRPPI---------RPDGRSPTQFRPLTAETGVLPGT 49
Query: 61 SGSAYAEFGN-TKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKD-- 117
+GSA F + T+ IV V E N + + A I GQ D
Sbjct: 50 NGSARVHFADGTEAIVGVKAEIEKTGGSQEQNDDQDRSRNDWLELAVEIPGQRDDEASTV 109
Query: 118 -FSSMLHKAL 126
+ ML +AL
Sbjct: 110 FLAEMLREAL 119
>gi|66809981|ref|XP_638714.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
gi|60467336|gb|EAL65367.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
Length = 237
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 12/118 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE----SKKAMMYSNIG 93
R D R + RP G++N A GSA +KV+ +V+GP E K+ ++ S +
Sbjct: 7 RNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSARKEKILKSYVE 66
Query: 94 RLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
TF K+ ++ A+E I+ +P+T + V V G
Sbjct: 67 --------VTFTPAFGNTNYIDKEKELLIKNAVESMILTTLYPRTQISVILQVFSDDG 116
>gi|434402245|ref|YP_007145130.1| RNAse PH [Cylindrospermum stagnale PCC 7417]
gi|428256500|gb|AFZ22450.1| RNAse PH [Cylindrospermum stagnale PCC 7417]
Length = 247
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R ++ RP F G + A+GS A+ G+T+V+ + K + + G L
Sbjct: 3 WQRPDGRQSYELRPISFYPGFTHYAAGSVLAKCGDTQVLCTATVAEGVPKFLAGTGKGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
AT R + K + ++ ++L A+ E + T+ V A VL++
Sbjct: 63 TAEYRMLPSATQQRQERELLKLSGRTQEIQRLIGRSLRAALDFEALGERTLTVDADVLQA 122
>gi|343496398|ref|ZP_08734496.1| ribonuclease PH [Vibrio nigripulchritudo ATCC 27043]
gi|342821237|gb|EGU56025.1| ribonuclease PH [Vibrio nigripulchritudo ATCC 27043]
Length = 238
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RPD R Q RP A GS EFGNTKV+ + + + G +
Sbjct: 1 MRPDDRAADQVRPIKMTRNYTAYAEGSVLVEFGNTKVLCNASVEENVPRWLKGQGKGWVT 60
Query: 97 CNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ ++L + LE + V V V++
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
gi|241917348|gb|EER90492.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
Length = 239
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + G
Sbjct: 6 RADGRNPNQLRPFSCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRK------GENPE 59
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S P GQ G +++ L + L+ +L P TT V V+ G
Sbjct: 60 KASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDG 114
>gi|310798773|gb|EFQ33666.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
Length = 266
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK---AMMYSNI 92
LR D R +++ R + +A GS+Y E G+TKV+ V GP E ++ A +
Sbjct: 12 LLRVDGRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPTEPQRRGGAGGQTKE 71
Query: 93 GRLNCNVSYTTFAT-PIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ N+ F++ R +G + K + + + KA+ + FP +++ + VL
Sbjct: 72 AAVTVNLVVAGFSSVDRRKRGRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLHVLS 131
Query: 149 SGG 151
G
Sbjct: 132 QDG 134
>gi|392590636|gb|EIW79965.1| hypothetical protein CONPUDRAFT_166613 [Coniophora puteana
RWD-64-598 SS2]
Length = 289
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
Query: 9 TTAKATYSPIDP-TRKTRPPIFS------------GSDVDWLRPDSRGFHQCRPAFFRTG 55
TTA+A P DP + + IF DV RPD RGF R G
Sbjct: 3 TTAQAPEPPKDPQSEAIKAQIFQRLHPRSYLERYISEDV---RPDGRGFEDWREVSVNVG 59
Query: 56 AVNSASGSAYAEFGNTKVIVSV 77
++++A GSA G+T+++ V
Sbjct: 60 SISTAHGSALVRMGDTRIVCGV 81
>gi|304314829|ref|YP_003849976.1| exosome RNA binding protein [Methanothermobacter marburgensis
str. Marburg]
gi|302588288|gb|ADL58663.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 267
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
R D R H+ R TG ++ A GS+ + GNT++IV V
Sbjct: 21 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGV 60
>gi|302348935|ref|YP_003816573.1| exosome complex exonuclease 2 [Acidilobus saccharovorans 345-15]
gi|302329347|gb|ADL19542.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans
345-15]
Length = 280
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS---NIG 93
+R D R F R + G ++ A GSA+ + GNT+V+V V + + + Y N G
Sbjct: 27 VRSDQRDFATPRNLSIQVGVIDKADGSAWVKLGNTQVLVGV----KLEVGIPYRDTPNEG 82
Query: 94 RLNCNVSYTTFATP 107
L N T A+P
Sbjct: 83 VLQVNSELTPVASP 96
>gi|342876785|gb|EGU78342.1| hypothetical protein FOXB_11157 [Fusarium oxysporum Fo5176]
Length = 268
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS----- 90
LR D R +++ R + ++A GS+Y E G+TKV+ V GP E +
Sbjct: 12 LLRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCIVTGPSEQQVQRRGGQQAPR 71
Query: 91 NIGRLNCNVSYTTFATPIRGQ-GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ +N NV F++ R + G + K + + + A + FP +++ + V
Sbjct: 72 DTAAINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANAFTSNLHTHLFPHSSITISLHV 131
Query: 147 LESGG 151
L G
Sbjct: 132 LSQDG 136
>gi|357152306|ref|XP_003576076.1| PREDICTED: exosome complex component RRP43-like [Brachypodium
distachyon]
Length = 307
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 1 MAAKPSTTTTAK--ATYSPIDPTRKTRPPIFSGSDV-DWLRPDSRGFHQCRPAFFRTGAV 57
MAA + TT + A ++ R+ P F + + +RPD+R + RP GAV
Sbjct: 1 MAAAETDTTASGGLAGEMEVEAYRRLFPLAFLERHLRESVRPDARRLAEARPTTVALGAV 60
Query: 58 NSASGSAYAEFGNTKVIVSV 77
+SA GSA G+T ++ S+
Sbjct: 61 SSAHGSALIRLGDTAMLASI 80
>gi|262040695|ref|ZP_06013932.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|329996940|ref|ZP_08302637.1| tRNA nucleotidyltransferase [Klebsiella sp. MS 92-3]
gi|378981305|ref|YP_005229446.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|424931201|ref|ZP_18349573.1| Ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|259041961|gb|EEW42995.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328539230|gb|EGF65259.1| tRNA nucleotidyltransferase [Klebsiella sp. MS 92-3]
gi|364520716|gb|AEW63844.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|407805388|gb|EKF76639.1| Ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
Length = 251
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 8/135 (5%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
RP I ++ +RP R +Q RP A GS EFG+TKV+ +
Sbjct: 2 RPHIRFKPEISIMRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVP 61
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFP 136
+ + G + +T R QG + ++ +AL A+ L+
Sbjct: 62 RFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALG 121
Query: 137 KTTVDVFALVLESGG 151
+ T+ + VL++ G
Sbjct: 122 EFTITLDCDVLQADG 136
>gi|336113862|ref|YP_004568629.1| polyribonucleotide nucleotidyltransferase [Bacillus coagulans 2-6]
gi|335367292|gb|AEH53243.1| Polyribonucleotide nucleotidyltransferase [Bacillus coagulans 2-6]
Length = 704
Score = 39.3 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 20/132 (15%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGP 80
VD +RPD R + RP G + GS G T+ I+ G
Sbjct: 312 VDKIRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGI 371
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFAT-PIRGQGSDHKDFSSMLHKALEGAIILETFPKTT 139
ESK+ M + N S++ T P+RG G ++ +ALE I E T
Sbjct: 372 EESKRFMHHYNFP------SFSVGETGPMRGPGRREIGHGALGERALEPVIPDEKEFPYT 425
Query: 140 VDVFALVLESGG 151
+ + + VLES G
Sbjct: 426 IRLVSEVLESNG 437
>gi|347750449|ref|YP_004858014.1| polyribonucleotide nucleotidyltransferase [Bacillus coagulans 36D1]
gi|347582967|gb|AEO99233.1| polyribonucleotide nucleotidyltransferase [Bacillus coagulans 36D1]
Length = 704
Score = 39.3 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 20/132 (15%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGP 80
VD +RPD R + RP G + GS G T+ I+ G
Sbjct: 312 VDKIRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGI 371
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFAT-PIRGQGSDHKDFSSMLHKALEGAIILETFPKTT 139
ESK+ M + N S++ T P+RG G ++ +ALE I E T
Sbjct: 372 EESKRFMHHYNFP------SFSVGETGPMRGPGRREIGHGALGERALEPVIPDEKEFPYT 425
Query: 140 VDVFALVLESGG 151
+ + + VLES G
Sbjct: 426 IRLVSEVLESNG 437
>gi|452974422|gb|EME74242.1| polynucleotide phosphorylase/polyadenylase [Bacillus sonorensis
L12]
Length = 705
Score = 39.3 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG + RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDEIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E T+ +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPSEKDFPYTIRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>gi|115442662|ref|XP_001218138.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188007|gb|EAU29707.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 268
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-------AMMY 89
LR D R +++ R + ++SGS+Y GNT ++ SV GP E ++ A
Sbjct: 14 LRLDGRRWNELRLFQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGSAGSS 73
Query: 90 SNIGRLNCNVS-YTTFATPIRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ ++ NV+ + R GSD + ++ L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDRQSSRVATTLRAAFQSHLHTYLYPHSTISIHVSV 133
Query: 147 LESGG 151
L S G
Sbjct: 134 LSSDG 138
>gi|336316853|ref|ZP_08571742.1| ribonuclease PH [Rheinheimera sp. A13L]
gi|335879018|gb|EGM76928.1| ribonuclease PH [Rheinheimera sp. A13L]
Length = 237
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R Q RP F A GS EFGNTKVI + + M G +
Sbjct: 1 MRPSGRTASQIRPITFTRQFTAHAEGSVLVEFGNTKVICTASVIEGVPRFMKGQGKGWIT 60
Query: 97 CNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ +AL A+ L+ + T+ + V++
Sbjct: 61 AEYGMLPRATHTRNDREAARGKQGGRTMEIQRLIGRALRTAVDLKLLGENTITIDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|313680799|ref|YP_004058538.1| RNAse PH [Oceanithermus profundus DSM 14977]
gi|313153514|gb|ADR37365.1| RNAse PH [Oceanithermus profundus DSM 14977]
Length = 240
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R RP ++ A GSA E G T+V+V+V + M G L
Sbjct: 3 RPDGRSPTGRRPLKITPRYLDYAEGSALVELGRTRVLVAVSLTPGVPRHMQGKRSGWLMA 62
Query: 98 NVSYTTFATPIRGQ------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ +T R Q G ++ L +A A+ L+ P T+ V A V+++ G
Sbjct: 63 EYNLLPRSTESRTQRERFKLGGRTQEVQRFLGRAFRAAVDLDLLPNQTIVVDADVIQADG 122
>gi|326385028|ref|ZP_08206700.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395]
gi|326196242|gb|EGD53444.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395]
Length = 252
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + RP F G + +GS EFGNT+V+ + S +G L
Sbjct: 4 RADGRADDELRPIKFTRGFTSHPAGSVLVEFGNTRVMCTASVTEGVPSWRRGSGLGWLTA 63
Query: 98 NVSYTTFAT-------PIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT +RG+ G + S ++ ++L I L + T+ + VL++
Sbjct: 64 EYSMLPAATHERSKRESVRGKIGGRTHEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 150 GG 151
G
Sbjct: 124 DG 125
>gi|456012652|gb|EMF46340.1| Polyribonucleotide nucleotidyltransferase [Planococcus
halocryophilus Or1]
Length = 705
Score = 39.3 bits (90), Expect = 0.59, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG + RP G +N GS G T+ I+ G ++
Sbjct: 313 IRPDGRGPSEIRPLSSEVGILNRTHGSGLFTRGQTQAMSICTLGALGDVQIIDGLGIEDT 372
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N +V T F +RG G ++ +ALE I E T+ +
Sbjct: 373 KRFMHHYNFPLF--SVGETGF---LRGPGRREIGHGALGERALEAVIPNEKDFPYTIRLV 427
Query: 144 ALVLESGG 151
A VLES G
Sbjct: 428 AEVLESNG 435
>gi|323489596|ref|ZP_08094823.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis
MPA1U2]
gi|323396727|gb|EGA89546.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis
MPA1U2]
Length = 705
Score = 39.3 bits (90), Expect = 0.60, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG + RP G +N GS G T+ I+ G ++
Sbjct: 313 IRPDGRGPSEIRPLSSEVGILNRTHGSGLFTRGQTQAMSICTLGALGDVQIIDGLGIEDT 372
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N +V T F +RG G ++ +ALE I E T+ +
Sbjct: 373 KRFMHHYNFPLF--SVGETGF---LRGPGRREIGHGALGERALEAVIPNEKDFPYTIRLV 427
Query: 144 ALVLESGG 151
A VLES G
Sbjct: 428 AEVLESNG 435
>gi|358060529|dbj|GAA93934.1| hypothetical protein E5Q_00580 [Mixia osmundae IAM 14324]
Length = 244
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R R G ++ + GSA FG V+ +V GP+E ++ L
Sbjct: 3 REDGRSLDAIRSLRISLGQLSKSDGSASFSFGQVSVLAAVRGPQEVSLKRELADRAALEI 62
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDV 142
V P+RG G K +SM+ L ++L P++ + +
Sbjct: 63 TV------LPVRGLPGPAAKAVASMITPVLVSLLLLHAHPRSLLQL 102
>gi|330447145|ref|ZP_08310795.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328491336|dbj|GAA05292.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 238
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R +Q RP A GS EFGNTKVI + + + G +
Sbjct: 1 MRPSGRSANQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVT 60
Query: 97 CNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ ++L A+ LE + + V V++
Sbjct: 61 AEYGMLPRATHTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|452947228|gb|EME52717.1| ribonuclease PH [Rhodococcus ruber BKS 20-38]
Length = 262
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + RP G N +GS EFG T+V+ + + S +G L
Sbjct: 4 REDGRADDELRPIRITRGFTNHPAGSVLVEFGQTRVMCTASVEEGVPRWRKGSGLGWLTA 63
Query: 98 NVSYTTFAT-------PIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT ++G+ G ++ S ++ +AL I L + T+ + VL++
Sbjct: 64 EYAMLPAATHTRSGRESVKGKLGGRTQEISRLVGRALRACIDLAALGENTIAIDCDVLQA 123
Query: 150 GG 151
G
Sbjct: 124 DG 125
>gi|407279952|ref|ZP_11108422.1| ribonuclease PH [Rhodococcus sp. P14]
Length = 262
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + RP G N +GS EFG T+V+ + + S +G L
Sbjct: 4 REDGRADDELRPIRITRGFTNHPAGSVLVEFGQTRVMCTASVEEGVPRWRKGSGLGWLTA 63
Query: 98 NVSYTTFAT-------PIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT ++G+ G ++ S ++ +AL I L + T+ + VL++
Sbjct: 64 EYAMLPAATHTRSGRESVKGKLGGRTQEISRLVGRALRACIDLAALGENTIAIDCDVLQA 123
Query: 150 GG 151
G
Sbjct: 124 DG 125
>gi|383852760|ref|XP_003701893.1| PREDICTED: exosome complex component RRP46-like [Megachile
rotundata]
Length = 220
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFAT 106
RP ++ GSA G+T VI V+GP E+K + M+Y + VSY T
Sbjct: 13 RPINCEMNQLSMPDGSAMLMQGDTAVIAGVYGPVEAKPQKMIYD---KAFVEVSY----T 65
Query: 107 PIRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVFALVLESGG 151
PI+G + M + + E AII+ P T + + LE G
Sbjct: 66 PIKGPAKVDDRMTEMYIKETCETAIIVTFHPATAICINIQELEDSG 111
>gi|403418833|emb|CCM05533.1| predicted protein [Fibroporia radiculosa]
Length = 286
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
+RPD RGF + R G++++A GSA G+T ++ V
Sbjct: 38 VRPDGRGFEEWRDVSVNVGSISTADGSALVRLGDTTIVCGV 78
>gi|159469337|ref|XP_001692824.1| exosome complex exonuclease [Chlamydomonas reinhardtii]
gi|158278077|gb|EDP03843.1| exosome complex exonuclease [Chlamydomonas reinhardtii]
Length = 242
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 57 VNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK 116
++ A GSA + V+ +V+GPR++K + + R V + A QG + +
Sbjct: 12 LDRADGSAKWTQEGSSVLAAVYGPRQAK--LQKEDAERAVVEVVFKPRAGL---QGHEDR 66
Query: 117 DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ LEG I L FP+T+V V VL+ G
Sbjct: 67 SLELEIRGILEGVIPLGMFPRTSVMVVLQVLQDDG 101
>gi|113475741|ref|YP_721802.1| ribonuclease PH [Trichodesmium erythraeum IMS101]
gi|110166789|gb|ABG51329.1| RNAse PH [Trichodesmium erythraeum IMS101]
Length = 238
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R +Q RP F A+ S +FG TKV+ +V K + + G L
Sbjct: 3 WQRPDGRKSNQLRPISFELDYTKFATSSVLTKFGETKVLCNVTIQPGVPKFLADTGQGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
AT R Q K + ++ ++L A+ + + T+ V A VL++
Sbjct: 63 TAEYRMLPAATSERQQREFMKLSGRTQEIQRLIGRSLRAALDMNLLGERTIIVDADVLQA 122
>gi|325969193|ref|YP_004245385.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
gi|323708396|gb|ADY01883.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
Length = 283
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
+R D+RG + R R G V +A GS+ GNTKV+ V
Sbjct: 27 VRIDNRGLNDYRELSIRVGVVRTADGSSLVSLGNTKVMAGV 67
>gi|169778981|ref|XP_001823955.1| exosome complex endonuclease 1 [Aspergillus oryzae RIB40]
gi|238499561|ref|XP_002381015.1| exosome complex endonuclease 1, putative [Aspergillus flavus
NRRL3357]
gi|83772694|dbj|BAE62822.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692768|gb|EED49114.1| exosome complex endonuclease 1, putative [Aspergillus flavus
NRRL3357]
gi|391869326|gb|EIT78525.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41 [Aspergillus
oryzae 3.042]
Length = 269
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-------AMMY 89
LR D R +++ R + ++SGS+Y GNT ++ SV GP E ++ A
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGAAGSS 73
Query: 90 SNIGRLNCNVS-YTTFATPIRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ ++ NV+ + R GSD + ++ L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRIATTLRAAFQSHLHTYLYPHSTISIHVSV 133
Query: 147 LESGG 151
L + G
Sbjct: 134 LSADG 138
>gi|376243405|ref|YP_005134257.1| ribonuclease PH [Corynebacterium diphtheriae CDCE 8392]
gi|376249097|ref|YP_005141041.1| ribonuclease PH [Corynebacterium diphtheriae HC04]
gi|376285333|ref|YP_005158543.1| ribonuclease PH [Corynebacterium diphtheriae 31A]
gi|376288338|ref|YP_005160904.1| ribonuclease PH [Corynebacterium diphtheriae BH8]
gi|376291009|ref|YP_005163256.1| ribonuclease PH [Corynebacterium diphtheriae C7 (beta)]
gi|376293862|ref|YP_005165536.1| ribonuclease PH [Corynebacterium diphtheriae HC02]
gi|371578848|gb|AEX42516.1| ribonuclease PH [Corynebacterium diphtheriae 31A]
gi|371585672|gb|AEX49337.1| ribonuclease PH [Corynebacterium diphtheriae BH8]
gi|372104405|gb|AEX68002.1| ribonuclease PH [Corynebacterium diphtheriae C7 (beta)]
gi|372106647|gb|AEX72709.1| ribonuclease PH [Corynebacterium diphtheriae CDCE 8392]
gi|372111185|gb|AEX77245.1| ribonuclease PH [Corynebacterium diphtheriae HC02]
gi|372115665|gb|AEX81723.1| ribonuclease PH [Corynebacterium diphtheriae HC04]
Length = 241
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV---FG----PRESKKAM 87
D+ R D R Q R G ++ +GS EFGNT+V+ + G R+S +
Sbjct: 3 DFSRADGRAVDQMRTVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGW 62
Query: 88 MYSNIGRLNCNVSYTTFATPIRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
+ + L + +RG +G H + S ++ ++L A+ L + T+++
Sbjct: 63 LTAEYAMLPAATAERNARESMRGKVKGRTH-EISRLIGRSLRAAVDLGELGENTINIDCD 121
Query: 146 VLESGG 151
VL++ G
Sbjct: 122 VLQADG 127
>gi|219124479|ref|XP_002182530.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405876|gb|EEC45817.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 764
Score = 38.9 bits (89), Expect = 0.65, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
RPD R FHQ R + G +N+A GS+ + G T+V+ +V
Sbjct: 49 RPDGRLFHQTRQTNIQRGILNNACGSSLIKLGTTQVLAAV 88
>gi|121535268|ref|ZP_01667082.1| Polyribonucleotide nucleotidyltransferase [Thermosinus
carboxydivorans Nor1]
gi|121306153|gb|EAX47081.1| Polyribonucleotide nucleotidyltransferase [Thermosinus
carboxydivorans Nor1]
Length = 699
Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 18/131 (13%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGP 80
+D +RPD R + RP G + GS G T+V I+ G
Sbjct: 307 IDKVRPDGRKLDEIRPISCEVGLLRRTHGSGLFTRGQTQVLTVTTLGAIGDEQILDGLGV 366
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTV 140
ESK+ M + N + + P RG G ++ +AL I ET T+
Sbjct: 367 EESKRYMHHYNFPAFSVGET-----RPARGPGRREIGHGALAERALLPVIPPETEFPYTI 421
Query: 141 DVFALVLESGG 151
+ + VLES G
Sbjct: 422 RLVSEVLESNG 432
>gi|409048701|gb|EKM58179.1| hypothetical protein PHACADRAFT_88763 [Phanerochaete carnosa
HHB-10118-sp]
Length = 290
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + RP + ++ GSA FG T+ + S+ GP E + + + L
Sbjct: 7 RHDGRDNDELRPVTIKYEGLDRVDGSAKFGFGQTQALASLSGPIEIRPNLELPSQATLEI 66
Query: 98 NVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
++ + P G+D + ++ L L +++L P+T V + L
Sbjct: 67 HIRPLA-SVP----GTDSRALAATLKAVLSPSLLLSHHPRTLVQIVGQAL 111
>gi|393241477|gb|EJD48999.1| exosome component 4, partial [Auricularia delicata TFB-10046 SS5]
Length = 268
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R H+ R + +A GSA G T + V GPRE + +++ + +
Sbjct: 11 LRSDGRRQHELRSLGMQLATQGAADGSALVSHGLTTALAVVHGPREGRLRSLTLHDRAVI 70
Query: 96 NCNVSYTTFATPIRGQGSD----HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ V F+ R + + ++ ++ + E A+ +P++ +D+ VL G
Sbjct: 71 DVTVIVAPFSQGERRKRTKGDRRTQELAAAVKATFEPAVQTHLYPRSQIDICIHVLHQDG 130
>gi|254445470|ref|ZP_05058946.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235]
gi|198259778|gb|EDY84086.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235]
Length = 252
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 10/124 (8%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI--GRL 95
RPD R R F+ +A+GS FG+TKVI + M N+ G L
Sbjct: 6 RPDGRKCDALREISFQADFAANATGSVLVSFGDTKVICGAMLEKRVPGWMRAQNVSGGWL 65
Query: 96 NCNVSYTTFATPIRGQGSDHK--------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
S ++T R Q + + ++ ++L I L+ P T+ V VL
Sbjct: 66 TAEYSMLPYSTLDRKQRDASRGKQDGRGVEIQRLIGRSLRAVIDLQKLPGHTLWVDCDVL 125
Query: 148 ESGG 151
++ G
Sbjct: 126 QADG 129
>gi|389863104|ref|YP_006365344.1| RNase PH [Modestobacter marinus]
gi|388485307|emb|CCH86851.1| RNase PH [Modestobacter marinus]
Length = 240
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R Q RP ++ A GS EFG T+V+ + + S +G +
Sbjct: 3 RPDGRAADQLRPVTITRNWLDHAEGSVLVEFGRTRVLCAASVTEGVPRWRRGSGLGWVTA 62
Query: 98 NVSYTTFATPIRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT R G + S ++ ++L +I L + ++ + VL++
Sbjct: 63 EYSMLPRATHTRSDRESVKGKIGGRTHEISRLIGRSLRASIDLAALGENSIALDCDVLQA 122
Query: 150 GG 151
G
Sbjct: 123 DG 124
>gi|406602742|emb|CCH45700.1| Polyribonucleotide nucleotidyltransferase [Wickerhamomyces
ciferrii]
Length = 236
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA 105
Q F ++G + +A+GS++ E V +SV+GPR + + + +N + F
Sbjct: 45 QITRTFIKSGLITNANGSSFLELDGNIVSISVYGPRPIRGSFVEKTTLSVNLEDNTGLFN 104
Query: 106 TPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
+ +K F + I L +PK+ +D+F
Sbjct: 105 DLL------NKKFCQYIENNFLSVINLSKYPKSGIDIF 136
>gi|334563352|ref|ZP_08516343.1| ribonuclease PH [Corynebacterium bovis DSM 20582]
Length = 276
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGP---RESKKAMMYS 90
R D R + RP G ++ +GS EFG+TKV+ V V P R+S + + +
Sbjct: 19 RADGRATDELRPVRITRGFTDNPAGSVLVEFGSTKVMCTASVEVGVPRFKRDSGEGWLTA 78
Query: 91 NIGRLNCNVSYTTFATPIRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + +RG +G H+ S ++ +AL A+ L + TV V VL+
Sbjct: 79 EYSMLPGSTHERMPRESMRGKVKGRTHE-ISRLVGRALRAAVDLRELGENTVMVDCDVLQ 137
Query: 149 SGG 151
+ G
Sbjct: 138 ADG 140
>gi|312137049|ref|YP_004004386.1| ribosomal RNA-processing protein rrp42 [Methanothermus fervidus
DSM 2088]
gi|311224768|gb|ADP77624.1| ribosomal RNA-processing protein RRP42 [Methanothermus fervidus
DSM 2088]
Length = 270
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
R D R F++ R +TG ++ A GSA + G+T+V+V V
Sbjct: 26 RLDGRSFYEFRDIKIKTGVISKAEGSARVKLGDTQVLVGV 65
>gi|308801625|ref|XP_003078126.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related
exoribonucleases (ISS) [Ostreococcus tauri]
gi|116056577|emb|CAL52866.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related
exoribonucleases (ISS) [Ostreococcus tauri]
Length = 378
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 5/115 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LRPD R R V SASGSA T V+ +V GP + G ++
Sbjct: 128 LRPDGRSREMLRRQRLHRSRVPSASGSAEYRIDGTIVVAAVHGPLRIAPWREAHDRGVID 187
Query: 97 CNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+S + + D + L A+E + L FP+ + + A V+ G
Sbjct: 188 VELSAPGWMS-----RDDQRACEGRLRGAIERCVELRDFPRFGLRISARVVSDDG 237
>gi|383934703|ref|ZP_09988143.1| ribonuclease PH [Rheinheimera nanhaiensis E407-8]
gi|383704238|dbj|GAB58234.1| ribonuclease PH [Rheinheimera nanhaiensis E407-8]
Length = 237
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R Q RP F A GS EFGNTKVI + + M G +
Sbjct: 1 MRPSGRTASQIRPLTFTRQFTAHAEGSVLVEFGNTKVICTASVIEGVPRFMKGQGKGWVT 60
Query: 97 CNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ +AL A+ L+ + T+ + V++
Sbjct: 61 AEYGMLPRATHTRNDREAARGKQGGRTMEIQRLIGRALRTAVDLKLLGENTITIDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|376254917|ref|YP_005143376.1| ribonuclease PH [Corynebacterium diphtheriae PW8]
gi|372118001|gb|AEX70471.1| ribonuclease PH [Corynebacterium diphtheriae PW8]
Length = 241
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGP---RESKKAM 87
D+ R D R Q R G ++ +GS EFGNT+V+ V + P R+S +
Sbjct: 3 DFSRADGRAVDQMRTVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGW 62
Query: 88 MYSNIGRLNCNVSYTTFATPIRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
+ + L + +RG +G H + S ++ ++L A+ L + T+++
Sbjct: 63 LTAEYAMLPAATAERNSRESMRGKVKGRTH-EISRLIGRSLRAAVDLGELGENTINIDCD 121
Query: 146 VLESGG 151
VL++ G
Sbjct: 122 VLQADG 127
>gi|56750485|ref|YP_171186.1| ribonuclease PH [Synechococcus elongatus PCC 6301]
gi|81299882|ref|YP_400090.1| ribonuclease PH [Synechococcus elongatus PCC 7942]
gi|61215786|sp|Q5N4V3.1|RNPH_SYNP6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|123557014|sp|Q31PB6.1|RNPH_SYNE7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|56685444|dbj|BAD78666.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81168763|gb|ABB57103.1| RNAse PH [Synechococcus elongatus PCC 7942]
Length = 238
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W+RPD R Q R F+ +GS A+FG T+V+ +V + + G L
Sbjct: 3 WIRPDGRRPDQLRAIAFQRRFTQFPAGSVLAQFGQTQVLCTVTIQAGVPRWLTGQGQGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
ATP R K + ++ ++L AI L+ + T+ + A VL++
Sbjct: 63 TAEYRMLPGATPDRQSREWLKLSGRTQEIQRLIGRSLRAAIDLKKLGERTLLIDADVLQA 122
>gi|91081401|ref|XP_972667.1| PREDICTED: similar to exosome component 8 [Tribolium castaneum]
gi|270006123|gb|EFA02571.1| hypothetical protein TcasGA2_TC008282 [Tribolium castaneum]
Length = 271
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
+RPD R F + RP G++++A GSA A+ G T V+ +
Sbjct: 22 IRPDGREFGEYRPIVVNLGSISTADGSAIAKVGRTTVVCGI 62
>gi|443707474|gb|ELU03042.1| hypothetical protein CAPTEDRAFT_117513 [Capitella teleta]
Length = 124
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 29 FSGSDVDWLRPDSRGF-------HQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR 81
+G +V L D RGF ++ R R G + GSAY E GNTKV+ +V G
Sbjct: 1 MAGMEVRQLLSD-RGFRVHGRKPNELRRIQCRMGVYSQTDGSAYIEQGNTKVLAAVHGLH 59
Query: 82 ESKKAMMYSNIGRLNCNVS--YTTFATPIRGQGSDHKDFSSMLH--KALEGAIILETFPK 137
E + S+I +S Y+ G K MLH + +E +I+ P+
Sbjct: 60 EPATS---SSILAFPSYISHQYSMAVFSAGDVGGRKKLIEMMLHLKQTIEASILTHLCPR 116
Query: 138 TTVDV 142
+ +D+
Sbjct: 117 SQIDI 121
>gi|402080799|gb|EJT75944.1| exosome complex exonuclease RRP41 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 286
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
LR D R +++ R + +A GS+Y E GNTKV+ V GP E
Sbjct: 12 LLRIDGRRWNELRRCHAQIRTQAAADGSSYLEMGNTKVMCVVTGPSE 58
>gi|170290982|ref|YP_001737798.1| exosome complex RNA-binding protein Rrp42 [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175062|gb|ACB08115.1| 3' exoribonuclease [Candidatus Korarchaeum cryptofilum OPF8]
Length = 268
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
R D RG H+ RP G A G A+ + G T+V+V V
Sbjct: 25 RVDGRGLHEYRPIEVLNGTFTKAEGEAWLKLGETQVLVGV 64
>gi|437373039|ref|ZP_20749527.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|435206044|gb|ELN89605.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
Length = 235
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R +Q RP A GS EFG+TKV+ + + + G +
Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 97 CNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ +AL A+ L+T + T+ + V++
Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|59710718|ref|YP_203494.1| ribonuclease PH [Vibrio fischeri ES114]
gi|75431903|sp|Q5E8P0.1|RNPH_VIBF1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|59478819|gb|AAW84606.1| ribonuclease PH [Vibrio fischeri ES114]
Length = 238
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R Q RP A GS EFGNTKVI + + + G +
Sbjct: 1 MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60
Query: 97 CNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ ++L A+ LE + + V V++
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|260948598|ref|XP_002618596.1| hypothetical protein CLUG_02055 [Clavispora lusitaniae ATCC 42720]
gi|238848468|gb|EEQ37932.1| hypothetical protein CLUG_02055 [Clavispora lusitaniae ATCC 42720]
Length = 239
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 57 VNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG-QGSDH 115
++ GSA GNTKV+VSV GP E K L S P RG +
Sbjct: 12 LSQVDGSARLTAGNTKVVVSVTGPIEPKPRQ------ELPTQASLEIVVRPSRGLAATKE 65
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDV 142
K +L L+ AI+ +P+ + V
Sbjct: 66 KVLEDLLRSVLQSAIVRYKYPRQLIQV 92
>gi|218439976|ref|YP_002378305.1| ribonuclease PH [Cyanothece sp. PCC 7424]
gi|226736901|sp|B7KB81.1|RNPH_CYAP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|218172704|gb|ACK71437.1| ribonuclease PH [Cyanothece sp. PCC 7424]
Length = 242
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPDSR Q RP F T GS A G T+V+ + K ++ S G L
Sbjct: 3 WTRPDSRQPDQLRPILFETNYSRFRVGSVLAHCGETRVLCTATIQPNVPKFLLNSGKGWL 62
Query: 96 NCNVSYTTFATPIRG-----QGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
ATP R Q S ++ ++ ++L + E + T+ + VL++
Sbjct: 63 TAEYRMLPGATPERQSRELMQLSGRTQEIQRLIGRSLRACLDFERLGERTIIIDTDVLQA 122
>gi|115488270|ref|NP_001066622.1| Os12g0403800 [Oryza sativa Japonica Group]
gi|108862543|gb|ABA97522.2| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|113649129|dbj|BAF29641.1| Os12g0403800 [Oryza sativa Japonica Group]
gi|215693833|dbj|BAG89032.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641114|gb|EEE69246.1| hypothetical protein OsJ_28497 [Oryza sativa Japonica Group]
Length = 284
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R Q R TG + A+GSA G T+VI +V K ++++ + G+++
Sbjct: 20 LRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATVKAEL-GKPSILHPDKGKVS 78
Query: 97 CNVSYTTFATPI-RGQGSDHKDFSSMLHKALEGAII 131
V + A P+ G+GS+ +FS+ L AL+ ++
Sbjct: 79 IFVDCSPTAAPMFEGRGSE--EFSAELCVALQRCLL 112
>gi|383754382|ref|YP_005433285.1| putative polyribonucleotide nucleotidyltransferase [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381366434|dbj|BAL83262.1| putative polyribonucleotide nucleotidyltransferase [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 689
Score = 38.5 bits (88), Expect = 0.81, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 20/129 (15%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG + RP G + A GS G T++ I+ GP +
Sbjct: 310 IRPDGRGLEEVRPVSCEVGLLPRAHGSGLFTRGQTQIMTVTTLGPMSDEQIIDGLGPETT 369
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAI-ILETFPKTTVDV 142
K + + N + A PIR G ++ +AL I E FP T+ +
Sbjct: 370 KHYIHHYNFPGYSVGE-----AKPIRSPGRREIGHGALAERALVPVIPSTEEFP-YTIRL 423
Query: 143 FALVLESGG 151
+ VLES G
Sbjct: 424 VSEVLESNG 432
>gi|224089018|ref|XP_002308603.1| predicted protein [Populus trichocarpa]
gi|222854579|gb|EEE92126.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP ++ A GSA G+TKV +V+GP+ K N +
Sbjct: 5 RDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDTKVSAAVYGPKAGTKK--NENPEKACV 62
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V + P GQ G +++ +L + L+ IL P TT + + G
Sbjct: 63 EVIW----KPKTGQIGKLEREYEMILKRTLQSICILTLNPNTTTSIIVQFVNDDG 113
>gi|167521539|ref|XP_001745108.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776722|gb|EDQ90341.1| predicted protein [Monosiga brevicollis MX1]
Length = 313
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 28 IFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR 81
I G D +R D R H RP TG V++A+GSA A+ T V+V V R
Sbjct: 16 ILDGVQED-IRNDGRQRHHARPYHIETGLVSNANGSARAQHVGTDVLVGVKAER 68
>gi|390366534|ref|XP_783510.2| PREDICTED: exosome complex component RRP43-like
[Strongylocentrotus purpuratus]
Length = 279
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFG 79
+RPD R + R G++++A GSA + GNT V+ + G
Sbjct: 22 VRPDGRELGEIRSTILNVGSISTAHGSALVKLGNTTVVCGIKG 64
>gi|197333899|ref|YP_002154880.1| ribonuclease PH [Vibrio fischeri MJ11]
gi|423684847|ref|ZP_17659655.1| ribonuclease PH [Vibrio fischeri SR5]
gi|226736949|sp|B5FFE2.1|RNPH_VIBFM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|197315389|gb|ACH64836.1| ribonuclease PH [Vibrio fischeri MJ11]
gi|371495894|gb|EHN71488.1| ribonuclease PH [Vibrio fischeri SR5]
Length = 238
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R Q RP A GS EFGNTKVI + + + G +
Sbjct: 1 MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60
Query: 97 CNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ ++L A+ LE + + V V++
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|229086359|ref|ZP_04218536.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-44]
gi|228696971|gb|EEL49779.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-44]
Length = 717
Score = 38.5 bits (88), Expect = 0.84, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 18/131 (13%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGP 80
V+ +RPD R + RP G ++ GS G T+ I+ G
Sbjct: 312 VEKIRPDGRKSDEVRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGV 371
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTV 140
ESK+ M + N + + P+RG G ++ +ALE I E TV
Sbjct: 372 EESKRFMHHYNFPSFSVGET-----RPMRGPGRREIGHGALGERALEPVIPSEQDFPYTV 426
Query: 141 DVFALVLESGG 151
+ + VLES G
Sbjct: 427 RLVSEVLESNG 437
>gi|342186197|emb|CCC95683.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 227
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 57 VNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTT----FATPIRGQG 112
+ SA E GNT+VI +V P++ S GR+ C V ++ A R
Sbjct: 23 LEQCHSSACVELGNTRVICAVHHPQQLIDEYRGSR-GRVACTVRRSSRAGHHAMAFRDDV 81
Query: 113 SDHKDFSSMLHKALEGAIILETFPK 137
+ KD + L E A+ILE P+
Sbjct: 82 TPEKDMALALEGVAEQAVILEKIPQ 106
>gi|255578727|ref|XP_002530222.1| exosome complex exonuclease rrp42, putative [Ricinus communis]
gi|223530269|gb|EEF32169.1| exosome complex exonuclease rrp42, putative [Ricinus communis]
Length = 287
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 21/124 (16%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV---------FGPRESKKAM 87
LR D R RP F TG + A+GSA G T+VI SV F P + K A+
Sbjct: 20 LRSDGRKRDAYRPIFVETGVIPQANGSARVRIGATEVIASVKAELGRPNAFQPDKGKVAI 79
Query: 88 MYSNIGRLNCN-VSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
++C+ V+ TF RG + S+ L L G ++ +D+ +LV
Sbjct: 80 F------VDCSPVAEPTFEA--RGGEELSAELSAALQHCLLGG---KSGAGAGIDLSSLV 128
Query: 147 LESG 150
+ G
Sbjct: 129 VAEG 132
>gi|427739472|ref|YP_007059016.1| RNAse PH [Rivularia sp. PCC 7116]
gi|427374513|gb|AFY58469.1| RNAse PH [Rivularia sp. PCC 7116]
Length = 247
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R ++ RP F A+GS A+ G+T+V+ +V + + S G L
Sbjct: 3 WQRPDGRQANELRPVIFVKDFTRYAAGSVLAKCGDTQVLCTVSVSEGVPRFLADSGKGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
AT R K + ++ ++L A+ E + T+ V A VL++
Sbjct: 63 TAEYRMLPGATQQRHNRETIKLSGRTQEIQRLIGRSLRAALDFEALGERTLTVDADVLQA 122
>gi|25152573|ref|NP_497279.2| Protein EXOS-4.2 [Caenorhabditis elegans]
gi|351064253|emb|CCD72537.1| Protein EXOS-4.2 [Caenorhabditis elegans]
Length = 241
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 33 DVDWLRPDSRGFHQC----RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP 80
D D + DS + RP + G + GS YAEFGNT+V+ + GP
Sbjct: 19 DDDRMETDSEEHKRANTAFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQITGP 70
>gi|424819697|ref|ZP_18244764.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidophilus ARMAN-5_'5-way FS']
gi|326422493|gb|EGD71890.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidophilus ARMAN-5_'5-way FS']
Length = 253
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
LR D R + R + +N + GSAY E GNTKVI V
Sbjct: 17 LRLDQREAFEGRRMAIKDNVINHSDGSAYVELGNTKVIAGV 57
>gi|386846123|ref|YP_006264136.1| ribonuclease PH [Actinoplanes sp. SE50/110]
gi|359833627|gb|AEV82068.1| ribonuclease PH [Actinoplanes sp. SE50/110]
Length = 242
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R Q RP GS EFGNT+V+ + + S +G L
Sbjct: 3 RPDGRAADQLRPVTLTRHWSIHPEGSVLVEFGNTRVLCTASVTEGVPRWRKGSGLGWLTA 62
Query: 98 NVSYTTFATPIRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT RG G ++ S ++ ++L I L+ + ++ + VL++
Sbjct: 63 EYAMLPRATNTRGDRESVKGKVGGRTQEISRLIGRSLRACIDLKALGENSIVLDCDVLQA 122
Query: 150 GG 151
G
Sbjct: 123 DG 124
>gi|229524838|ref|ZP_04414243.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426]
gi|229338419|gb|EEO03436.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426]
Length = 257
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAM 87
D +RPD+R Q RP A GS EFGNTKV+ + PR K K
Sbjct: 18 DPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGW 77
Query: 88 MYSNIGRLNCNVSYTTFATPIRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ + G L T G QG + ++ ++L + LE + + V V
Sbjct: 78 VTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDV 137
Query: 147 LESGG 151
+++ G
Sbjct: 138 IQADG 142
>gi|319649514|ref|ZP_08003670.1| PnpA protein [Bacillus sp. 2_A_57_CT2]
gi|317398676|gb|EFV79358.1| PnpA protein [Bacillus sp. 2_A_57_CT2]
Length = 706
Score = 38.5 bits (88), Expect = 0.90, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 51/130 (39%), Gaps = 18/130 (13%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPR 81
D +RPD RG RP G + GS G T+ I+ G
Sbjct: 313 DKVRPDGRGLDVIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIE 372
Query: 82 ESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
E K+ M + N N +V T PIRG G ++ +ALE I E T+
Sbjct: 373 EEKRFMHHYNFP--NFSVGET---GPIRGPGRREIGHGALGERALEPIIPSEKDFPYTIR 427
Query: 142 VFALVLESGG 151
+ + VLES G
Sbjct: 428 LVSEVLESNG 437
>gi|153830706|ref|ZP_01983373.1| ribonuclease PH [Vibrio cholerae 623-39]
gi|148873826|gb|EDL71961.1| ribonuclease PH [Vibrio cholerae 623-39]
Length = 257
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAM 87
D +RPD+R Q RP A GS EFGNTKV+ + PR K K
Sbjct: 18 DPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGW 77
Query: 88 MYSNIGRLNCNVSYTTFATPIRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ + G L T G QG + ++ ++L + LE + + V V
Sbjct: 78 VTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDV 137
Query: 147 LESGG 151
+++ G
Sbjct: 138 IQADG 142
>gi|153216091|ref|ZP_01950265.1| ribonuclease PH [Vibrio cholerae 1587]
gi|153819951|ref|ZP_01972618.1| ribonuclease PH [Vibrio cholerae NCTC 8457]
gi|153821600|ref|ZP_01974267.1| ribonuclease PH [Vibrio cholerae B33]
gi|153825939|ref|ZP_01978606.1| ribonuclease PH [Vibrio cholerae MZO-2]
gi|227080431|ref|YP_002808982.1| ribonuclease PH [Vibrio cholerae M66-2]
gi|229506989|ref|ZP_04396497.1| ribonuclease PH [Vibrio cholerae BX 330286]
gi|229509359|ref|ZP_04398842.1| ribonuclease PH [Vibrio cholerae B33]
gi|229512476|ref|ZP_04401948.1| ribonuclease PH [Vibrio cholerae TMA 21]
gi|229516306|ref|ZP_04405754.1| ribonuclease PH [Vibrio cholerae RC9]
gi|229527287|ref|ZP_04416680.1| ribonuclease PH [Vibrio cholerae 12129(1)]
gi|229606497|ref|YP_002877145.1| ribonuclease PH [Vibrio cholerae MJ-1236]
gi|254291599|ref|ZP_04962388.1| ribonuclease PH [Vibrio cholerae AM-19226]
gi|297581663|ref|ZP_06943585.1| ribonuclease PH [Vibrio cholerae RC385]
gi|298500852|ref|ZP_07010654.1| ribonuclease PH [Vibrio cholerae MAK 757]
gi|9654617|gb|AAF93386.1| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|124114467|gb|EAY33287.1| ribonuclease PH [Vibrio cholerae 1587]
gi|126509515|gb|EAZ72109.1| ribonuclease PH [Vibrio cholerae NCTC 8457]
gi|126520887|gb|EAZ78110.1| ribonuclease PH [Vibrio cholerae B33]
gi|149740347|gb|EDM54483.1| ribonuclease PH [Vibrio cholerae MZO-2]
gi|150422456|gb|EDN14414.1| ribonuclease PH [Vibrio cholerae AM-19226]
gi|227008319|gb|ACP04531.1| ribonuclease PH [Vibrio cholerae M66-2]
gi|229335295|gb|EEO00779.1| ribonuclease PH [Vibrio cholerae 12129(1)]
gi|229346732|gb|EEO11702.1| ribonuclease PH [Vibrio cholerae RC9]
gi|229350475|gb|EEO15423.1| ribonuclease PH [Vibrio cholerae TMA 21]
gi|229353674|gb|EEO18611.1| ribonuclease PH [Vibrio cholerae B33]
gi|229356094|gb|EEO21013.1| ribonuclease PH [Vibrio cholerae BX 330286]
gi|229369152|gb|ACQ59575.1| ribonuclease PH [Vibrio cholerae MJ-1236]
gi|297534070|gb|EFH72909.1| ribonuclease PH [Vibrio cholerae RC385]
gi|297540356|gb|EFH76415.1| ribonuclease PH [Vibrio cholerae MAK 757]
Length = 257
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAM 87
D +RPD+R Q RP A GS EFGNTKV+ + PR K K
Sbjct: 18 DPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGW 77
Query: 88 MYSNIGRLNCNVSYTTFATPIRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ + G L T G QG + ++ ++L + LE + + V V
Sbjct: 78 VTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDV 137
Query: 147 LESGG 151
+++ G
Sbjct: 138 IQADG 142
>gi|242022077|ref|XP_002431468.1| Exosome complex exonuclease RRP42, putative [Pediculus humanus
corporis]
gi|212516756|gb|EEB18730.1| Exosome complex exonuclease RRP42, putative [Pediculus humanus
corporis]
Length = 290
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 53/128 (41%), Gaps = 12/128 (9%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D R D R + RP T V+ A+GSA NT ++V V K + + G+
Sbjct: 20 DNFRYDGRTRSEYRPIEVETDVVSHANGSARLRLANTDILVGV-KAEIVKPTIENPDKGK 78
Query: 95 LNCNVSYTTFATPI---RGQGSDHKDFSSMLHKA--------LEGAIILETFPKTTVDVF 143
+ V + ATP RG D SS L +A L+ IL F + V
Sbjct: 79 IEFFVDCSANATPAFEKRGGEDLANDLSSALTRAYSAPESLDLKSLCILPKFQCWKLYVD 138
Query: 144 ALVLESGG 151
L+LE GG
Sbjct: 139 VLILECGG 146
>gi|406951449|gb|EKD81386.1| hypothetical protein ACD_39C01832G0004 [uncultured bacterium]
Length = 244
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
R D R + Q RP TG V GSA FG+TKV+ +V
Sbjct: 3 RHDGRSYDQLRPVSIETGYVKYPHGSALISFGDTKVLCTV 42
>gi|357631022|gb|EHJ78761.1| exosc7 protein [Danaus plexippus]
Length = 310
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 23/149 (15%)
Query: 18 IDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
+ P+ K I G + D+ R D R RP T V+ ASGSA NT ++V V
Sbjct: 6 LSPSEKVY--ILHGIEDDF-RSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGV 62
Query: 78 FG----PRESKKAMMYSNIGRLNCNVSYTTFATP-IRGQGSDH--KDFSSMLHKA----- 125
P+ K N G+++ V + ATP G+G + + S+++ +A
Sbjct: 63 KTEIDVPKPDK-----PNQGKIDFFVDCSANATPEFEGRGGEQLANNISNLMQRAYHSQQ 117
Query: 126 ---LEGAIILETFPKTTVDVFALVLESGG 151
L+ ILE + V L+LE GG
Sbjct: 118 AFDLKQLCILEGKQCWKLYVDILILECGG 146
>gi|242097164|ref|XP_002439072.1| hypothetical protein SORBIDRAFT_10g031070 [Sorghum bicolor]
gi|241917295|gb|EER90439.1| hypothetical protein SORBIDRAFT_10g031070 [Sorghum bicolor]
Length = 286
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R Q R +TG + A+GSA G T++I SV K ++++ + G+++
Sbjct: 20 LRTDGRRRLQFRALSVQTGVIPQANGSARVRLGATEIIASVKAEL-GKPSILHPDKGKVS 78
Query: 97 CNVSYTTFATPI-RGQGSDH--KDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
V + A P+ G+GS+ + S L + L G ++ +D+ +L++ G
Sbjct: 79 IFVDCSPTAEPMFEGRGSEELSAELSVSLQRCLLGG---KSGAGAAIDLSSLIVVEG 132
>gi|254421303|ref|ZP_05035021.1| ribonuclease PH [Synechococcus sp. PCC 7335]
gi|196188792|gb|EDX83756.1| ribonuclease PH [Synechococcus sp. PCC 7335]
Length = 241
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R Q RP F ++GS A GNT+V+ + + + S G L
Sbjct: 3 WQRPDQRQPDQLRPFKFERQFTQYSAGSVLAHCGNTRVLCTASVLEGVPRFLKDSGQGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+T R K + ++ ++L A+ +E + T+ + A VL++
Sbjct: 63 TAEYRMLPGSTQTRKSREFMKLSGRTQEIQRLIGRSLRAALDMEALGERTITIDADVLQA 122
Query: 150 GG 151
G
Sbjct: 123 DG 124
>gi|298490673|ref|YP_003720850.1| ribonuclease PH ['Nostoc azollae' 0708]
gi|298232591|gb|ADI63727.1| ribonuclease PH ['Nostoc azollae' 0708]
Length = 246
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R ++ RP F + ASGS A+ G+T+V+ +V K + + G L
Sbjct: 3 WQRPDGRNSYELRPLSFYSNFTRFASGSVLAKCGDTQVLCTVSVSDSVPKFLNGTGKGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
AT R + K + ++ ++L A+ E + T+ + A VL++
Sbjct: 63 TAEYRMLPSATQKRQERELLKLSGRTQEIQRLIGRSLRAALDFEVLGERTLIIDADVLQA 122
>gi|145520971|ref|XP_001446341.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413818|emb|CAK78944.1| unnamed protein product [Paramecium tetraurelia]
Length = 227
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q R F+ S GS + G T+VI V GPR ++ + L
Sbjct: 5 RQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLVQGPRAKTQSEL------LLI 58
Query: 98 NVSYTTFATPIRGQGS----DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S + F+ + S D+ F+ L ++ E IIL+ K+ + + V+++ G
Sbjct: 59 EYSVSPFSNIESKRSSKFDKDYSMFAENLKESFENLIILDENGKSEISISVCVIQNDG 116
>gi|153800847|ref|ZP_01955433.1| ribonuclease PH [Vibrio cholerae MZO-3]
gi|124123678|gb|EAY42421.1| ribonuclease PH [Vibrio cholerae MZO-3]
Length = 257
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAM 87
D +RPD+R Q RP A GS EFGNTKV+ + PR K K
Sbjct: 18 DPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGW 77
Query: 88 MYSNIGRLNCNVSYTTFATPIRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ + G L T G QG + ++ ++L + LE + + V V
Sbjct: 78 VTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDV 137
Query: 147 LESGG 151
+++ G
Sbjct: 138 IQADG 142
>gi|318083345|ref|NP_001187695.1| exosome complex exonuclease rrp43 [Ictalurus punctatus]
gi|308323723|gb|ADO28997.1| exosome complex exonuclease rrp43 [Ictalurus punctatus]
Length = 277
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
RPD R + RP TG++++A GSA + GN VI +
Sbjct: 23 RPDGRELGEFRPTTLNTGSISTADGSALVKIGNATVICGI 62
>gi|300780583|ref|ZP_07090438.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030]
gi|300533569|gb|EFK54629.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030]
Length = 245
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
+LR D R + RP G ++ +GS EFGNT+V+ + + S G L
Sbjct: 7 FLRADGRALDEMRPVRITRGFTSNPAGSVLVEFGNTRVMCTASAEEGVPRFKKDSGEGWL 66
Query: 96 NCNVSYTTFATPIRG---------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ AT R +G H + S ++ ++L A+ L + T+ + V
Sbjct: 67 TAEYAMLPAATHDRMPRESMKGKVKGRTH-EISRLVGRSLRAAVDLTALGENTIQLDCDV 125
Query: 147 LESGG 151
L++ G
Sbjct: 126 LQADG 130
>gi|229521070|ref|ZP_04410491.1| ribonuclease PH [Vibrio cholerae TM 11079-80]
gi|229341955|gb|EEO06956.1| ribonuclease PH [Vibrio cholerae TM 11079-80]
Length = 257
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAM 87
D +RPD+R Q RP A GS EFGNTKV+ + PR K K
Sbjct: 18 DPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGW 77
Query: 88 MYSNIGRLNCNVSYTTFATPIRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ + G L T G QG + ++ ++L + LE + + V V
Sbjct: 78 VTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDV 137
Query: 147 LESGG 151
+++ G
Sbjct: 138 IQADG 142
>gi|338813338|ref|ZP_08625467.1| polynucleotide phosphorylase/polyadenylase [Acetonema longum DSM
6540]
gi|337274697|gb|EGO63205.1| polynucleotide phosphorylase/polyadenylase [Acetonema longum DSM
6540]
Length = 696
Score = 38.5 bits (88), Expect = 0.98, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 20/132 (15%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGP 80
VD +RPD R + RP G + GS G T+V I+ G
Sbjct: 307 VDKIRPDGRKLDEVRPISCEVGVLARTHGSGLFTRGQTQVLTVTTLGAIGDEQILDGLGV 366
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFAT-PIRGQGSDHKDFSSMLHKALEGAIILETFPKTT 139
ESK+ + + N SY+ T P RG G ++ +AL I E+ T
Sbjct: 367 EESKRYIHHYNFP------SYSVGETRPSRGPGRREIGHGALAERALVPVIPPESEFPYT 420
Query: 140 VDVFALVLESGG 151
+ + + VLES G
Sbjct: 421 IRLVSEVLESNG 432
>gi|339627975|ref|YP_004719618.1| polynucleotide phosphorylase/polyadenylase [Sulfobacillus
acidophilus TPY]
gi|379007608|ref|YP_005257059.1| polyribonucleotide nucleotidyltransferase [Sulfobacillus
acidophilus DSM 10332]
gi|339285764|gb|AEJ39875.1| polynucleotide phosphorylase/polyadenylase [Sulfobacillus
acidophilus TPY]
gi|361053870|gb|AEW05387.1| Polyribonucleotide nucleotidyltransferase [Sulfobacillus
acidophilus DSM 10332]
Length = 738
Score = 38.5 bits (88), Expect = 1.00, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV-FGPRESKKAMMYSNIG-- 93
+RPD RGF + RP G + G+ G T+ + ++ GP ++ M IG
Sbjct: 312 IRPDGRGFKEIRPLSIEVGVLPRVHGTGLFTRGQTQALTAMTLGPLSDQQ--MLDGIGEE 369
Query: 94 ---RLNCNVSYTTFAT----PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
R + ++ FAT P+RG ++ +ALE I E + + + +
Sbjct: 370 ESKRYMHHYNFPPFATGETGPMRGPNRRAIGHGALAERALEPVIPSEAEFPYALRLVSDI 429
Query: 147 LESGG 151
LES G
Sbjct: 430 LESNG 434
>gi|291086420|ref|ZP_06355763.2| tRNA nucleotidyltransferase [Citrobacter youngae ATCC 29220]
gi|291068205|gb|EFE06314.1| tRNA nucleotidyltransferase [Citrobacter youngae ATCC 29220]
Length = 273
Score = 38.5 bits (88), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 9/135 (6%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
+P F D +RP R +Q RP A GS EFG+TKV+ +
Sbjct: 25 QPHSFQAGDF-IMRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVP 83
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFP 136
+ + G + AT R QG + ++ +AL A+ L+T
Sbjct: 84 RFLKGQGQGWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLG 143
Query: 137 KTTVDVFALVLESGG 151
+ T+ + V+++ G
Sbjct: 144 EFTITLDCDVIQADG 158
>gi|212721556|ref|NP_001131768.1| exosome complex exonuclease RRP43 [Zea mays]
gi|194692484|gb|ACF80326.1| unknown [Zea mays]
gi|195623954|gb|ACG33807.1| exosome complex exonuclease RRP43 [Zea mays]
gi|414869688|tpg|DAA48245.1| TPA: exosome complex exonuclease RRP43 [Zea mays]
Length = 306
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
+R D+R + RP GAV+SA GSA A G+T ++ SV
Sbjct: 39 VRIDARRLREARPTTVALGAVSSAHGSALARLGDTAMLASV 79
>gi|380026087|ref|XP_003696793.1| PREDICTED: exosome complex component RRP46-like [Apis florea]
Length = 223
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFAT 106
RP ++ GSA GNT V+ ++GP E+K + M+Y + + VSY
Sbjct: 16 RPMNCELNQLSMPDGSAMLMQGNTAVVAGIYGPIEAKPQKMIYD---KASIEVSY----I 68
Query: 107 PIRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVFALVLESGG 151
P++G + M + + E AII+ P T + + +E G
Sbjct: 69 PVKGPAKIDDRMTEMYIKETCEAAIIVTFHPATAICINIQEMEDSG 114
>gi|304320412|ref|YP_003854055.1| ribonuclease PH [Parvularcula bermudensis HTCC2503]
gi|303299314|gb|ADM08913.1| ribonuclease PH [Parvularcula bermudensis HTCC2503]
Length = 234
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 7/122 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R F++ R F G A GS FGNT V+ + + G +
Sbjct: 1 MRPSGRAFNEMRDVTFELGVNRYAEGSCLVRFGNTHVLCTASFEENVPPWLKNQRRGWVT 60
Query: 97 CNVSYTTFATPIRGQGSDHK-------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT RG+ K + ++ ++L + L + + V VL++
Sbjct: 61 AEYSMLPRATHTRGRRERDKGPSGRTQEIQRLIGRSLRAVVDLNALGERQIQVDCDVLQA 120
Query: 150 GG 151
G
Sbjct: 121 DG 122
>gi|258620570|ref|ZP_05715607.1| ribonuclease PH [Vibrio mimicus VM573]
gi|262172697|ref|ZP_06040375.1| ribonuclease PH [Vibrio mimicus MB-451]
gi|417822383|ref|ZP_12468983.1| ribonuclease PH [Vibrio cholerae HE48]
gi|424810044|ref|ZP_18235411.1| ribonuclease PH [Vibrio mimicus SX-4]
gi|449145443|ref|ZP_21776249.1| ribonuclease PH [Vibrio mimicus CAIM 602]
gi|258587085|gb|EEW11797.1| ribonuclease PH [Vibrio mimicus VM573]
gi|261893773|gb|EEY39759.1| ribonuclease PH [Vibrio mimicus MB-451]
gi|340049626|gb|EGR10540.1| ribonuclease PH [Vibrio cholerae HE48]
gi|342322682|gb|EGU18470.1| ribonuclease PH [Vibrio mimicus SX-4]
gi|449078982|gb|EMB49910.1| ribonuclease PH [Vibrio mimicus CAIM 602]
Length = 238
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RPD+R Q RP A GS EFGNTKV+ + PR K K +
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPIRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|242083100|ref|XP_002441975.1| hypothetical protein SORBIDRAFT_08g006250 [Sorghum bicolor]
gi|241942668|gb|EES15813.1| hypothetical protein SORBIDRAFT_08g006250 [Sorghum bicolor]
Length = 287
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+R D R Q R +TG + A+GSA G T++I SV K ++++ + G+++
Sbjct: 21 IRTDGRRRLQFRALSVQTGVIPQANGSARVRLGVTEIIASVKAEL-GKPSILHPDKGKVS 79
Query: 97 CNVSYTTFATPI-RGQGSDH--KDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
V + A P+ G+GS+ + S+ L + L G ++ +D+ +L++ G
Sbjct: 80 IFVDCSPTAEPMFEGRGSEELSAELSAALQRCLLGG---KSGSGAAIDLSSLIVVEG 133
>gi|333895804|ref|YP_004469679.1| ribonuclease PH [Alteromonas sp. SN2]
gi|332995822|gb|AEF05877.1| ribonuclease PH [Alteromonas sp. SN2]
Length = 237
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R +Q RP A GS EFGNTKV+ + + M G +
Sbjct: 1 MRPSGRTANQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWIT 60
Query: 97 CNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
S AT R QG + ++ ++L A+ L+ + T+ + V++
Sbjct: 61 AEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|330797129|ref|XP_003286615.1| hypothetical protein DICPUDRAFT_31155 [Dictyostelium purpureum]
gi|325083440|gb|EGC36893.1| hypothetical protein DICPUDRAFT_31155 [Dictyostelium purpureum]
Length = 276
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
+RPD R + R TG+V +A GS++ + GNT V+ V
Sbjct: 21 VRPDGRSLNDTRKTTISTGSVTTADGSSFVKIGNTSVVCGV 61
>gi|219118941|ref|XP_002180237.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408494|gb|EEC48428.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 212
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 57 VNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSD-- 114
+ +A GSA E G+TKVI V GP + + + ++ +LN F G+ +
Sbjct: 2 LEAAQGSALVELGHTKVIGQVLGPVTASSSHLPPSL-QLNMEEGVMHFELLSTGKINSWT 60
Query: 115 ---HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
D +S L AL ++ L +PK + V VL+ G
Sbjct: 61 IARETDLASNLSDALSASVPLRQYPKCALLVKITVLQDDG 100
>gi|392553420|ref|ZP_10300557.1| ribonuclease PH [Pseudoalteromonas spongiae UST010723-006]
Length = 237
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP R +Q RP F A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPSERTPNQIRPVSFTRNYTMHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWIT 60
Query: 90 SNIGRLNCNVSYTTFATPIRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L + +G QG + ++ ++L A+ L + T+ + V++
Sbjct: 61 AEYGMLPRSTHSRCGREAAKGKQGGRTMEIQRLIARSLRAAVDLAALGENTITIDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|262404946|ref|ZP_06081498.1| ribonuclease PH [Vibrio sp. RC586]
gi|262348785|gb|EEY97926.1| ribonuclease PH [Vibrio sp. RC586]
Length = 238
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RPD+R Q RP A GS EFGNTKV+ + PR K K +
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPIRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|78776629|ref|YP_392944.1| polynucleotide phosphorylase/polyadenylase [Sulfurimonas
denitrificans DSM 1251]
gi|123754746|sp|Q30TH2.1|PNP_SULDN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78497169|gb|ABB43709.1| Polyribonucleotide nucleotidyltransferase [Sulfurimonas
denitrificans DSM 1251]
Length = 721
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTK--VIVSVFGPRESKKAMMYSNI 92
D +R D R ++ RP T + SA S G T+ V++++ GP K A M+ N+
Sbjct: 338 DRVRADGRALNEIRPISISTNVLPSAHASCLFTRGQTQALVVLTMGGP---KDAQMFENL 394
Query: 93 ---GRLNCNV----SYTTF----ATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
G N N ++ F A+PI G ++ +ALE + LE TV
Sbjct: 395 TDEGTQNENFMVHYNFPGFSVGEASPIMGTKRRELGHGNLAKRALEPIVNLE---GQTVR 451
Query: 142 VFALVLESGG 151
+ + +LES G
Sbjct: 452 LVSEILESNG 461
>gi|71278026|ref|YP_266880.1| ribonuclease PH [Colwellia psychrerythraea 34H]
gi|123634261|sp|Q48AN3.1|RNPH_COLP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|71143766|gb|AAZ24239.1| ribonuclease PH [Colwellia psychrerythraea 34H]
Length = 237
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP R Q RP A GS EFG+TKVI V V PR K K +
Sbjct: 1 MRPSGRTLGQIRPVTITRQFTTHAEGSVLIEFGDTKVICTATVEVGVPRFLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPIRGQGSDHK-DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L + G+ S + S ++ +AL A+ L+ + T+ V V++
Sbjct: 61 AEYGMLPRSTHTRMRREAASGKQSGRTLEISRLIARALRAAVDLKALGENTISVDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>gi|381394488|ref|ZP_09920201.1| ribonuclease PH [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379329743|dbj|GAB55334.1| ribonuclease PH [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 237
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP SR Q RP A GS EFG+TKV+ + + M G +
Sbjct: 1 MRPSSRTASQIRPVTITRNFTIHAEGSVLIEFGDTKVLCNASVQEGVPRFMKGQGKGWIT 60
Query: 97 CNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
S AT R QG + ++ ++L A+ L+ + T+ V V++
Sbjct: 61 AEYSMLPRATHTRSDREASRGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITVDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,331,630,296
Number of Sequences: 23463169
Number of extensions: 90643085
Number of successful extensions: 207182
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 816
Number of HSP's that attempted gapping in prelim test: 205756
Number of HSP's gapped (non-prelim): 1520
length of query: 151
length of database: 8,064,228,071
effective HSP length: 114
effective length of query: 37
effective length of database: 9,684,394,101
effective search space: 358322581737
effective search space used: 358322581737
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)