BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037553
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P0I8|EXOS6_DANRE Exosome complex component MTR3 OS=Danio rerio GN=exosc6 PE=2 SV=2
Length = 271
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 82/150 (54%), Gaps = 16/150 (10%)
Query: 17 PIDPTRKTRPPIFSGSDVDWLRPDS-----------RGFHQCRPAFFRTGAVNSASGSAY 65
P+D T++ R P S S + +L PD RG RP F R G V+ A GSAY
Sbjct: 2 PVD-TKRIRGPEESQSPLLFLSPDKAPKAPSSRQGVRGNGDVRPVFARCGLVSQAKGSAY 60
Query: 66 AEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSM 121
E GNTK+I SV+GP+E+ ++ GRL C+ F+ RG QGS+ +D S+
Sbjct: 61 IEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFRLAPFSCVKRGAWIQGSEERDLSAT 120
Query: 122 LHKALEGAIILETFPKTTVDVFALVLESGG 151
L ++L + L +P++ +DV +VLE+ G
Sbjct: 121 LMESLRPGVCLHRYPRSQIDVNVMVLENDG 150
>sp|O26779|ECX1_METTH Probable exosome complex exonuclease 1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_683 PE=1 SV=1
Length = 240
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
+R D R F + RP G + A GS+Y EFG K++V+V+GPRE++ + + + +
Sbjct: 16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75
Query: 96 NCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C + F+ R + G D + + S + +AL A+ILE FP++ +DVF VLE+ G
Sbjct: 76 RCRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEG 134
>sp|A0RXU1|ECX1_CENSY Probable exosome complex exonuclease 1 OS=Cenarchaeum symbiosum
(strain A) GN=CENSYa_1536 PE=3 SV=1
Length = 243
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R + R G +N+A+GSAY EFG+ K++ +FGPR+ K M+ +
Sbjct: 12 DENGIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTE 71
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L C + F+ R + + + + S ++ +ALE +++LE FP+T VDVF VL+
Sbjct: 72 TGILRCRYHMSPFSVSERKKPAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVLQ 131
Query: 149 SGG 151
+ G
Sbjct: 132 ADG 134
>sp|O59223|ECX1_PYRHO Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1549 PE=3 SV=1
Length = 249
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-S 83
+P D + R D R ++ RP + G + +A+GSAY E+G K+I +V+GPRE
Sbjct: 4 KPEGLKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELH 63
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T++
Sbjct: 64 SKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTSI 123
Query: 141 DVFALVLES 149
DVF VL++
Sbjct: 124 DVFIEVLQA 132
>sp|Q8U0L9|ECX1_PYRFU Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1568 PE=3 SV=1
Length = 250
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
+P D + R D R ++ RP + G + +A+GSAY E+G K+I +V+GPRE
Sbjct: 4 KPEGLKLIDENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIH 63
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T +
Sbjct: 64 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIRGALEPALILEMFPRTAI 123
Query: 141 DVFALVLES 149
DVF VL++
Sbjct: 124 DVFIEVLQA 132
>sp|Q9V119|ECX1_PYRAB Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06100 PE=1 SV=1
Length = 249
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
+P D + R D R ++ RP G + +A+GSAY E+G K+I +V+GPRE
Sbjct: 4 KPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELH 63
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T +
Sbjct: 64 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAI 123
Query: 141 DVFALVLES 149
DVF VL++
Sbjct: 124 DVFIEVLQA 132
>sp|B6YSI2|ECX1_THEON Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus
(strain NA1) GN=TON_0030 PE=3 SV=1
Length = 249
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
+P D + R D R ++ RP G + +A GSAY E+G K++ +V+GPRE
Sbjct: 4 KPEDLKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIH 63
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T +
Sbjct: 64 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAI 123
Query: 141 DVFALVLES 149
D+F VL++
Sbjct: 124 DIFIEVLQA 132
>sp|C5A2B9|ECX1_THEGJ Probable exosome complex exonuclease 1 OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_2036 PE=3 SV=1
Length = 249
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
RP D + R D R ++ R G + +A GSAY E+G K++ +V+GPRE
Sbjct: 4 RPEGLKLIDENGRRIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIH 63
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T V
Sbjct: 64 PKHLQRPDTAVLRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTVV 123
Query: 141 DVFALVLES 149
DVF VL++
Sbjct: 124 DVFIEVLQA 132
>sp|A9A5C9|ECX1_NITMS Probable exosome complex exonuclease 1 OS=Nitrosopumilus maritimus
(strain SCM1) GN=Nmar_0432 PE=3 SV=1
Length = 244
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + R D R + R + G + +A GS+Y EFG+ K++V VFGPR+ K M ++
Sbjct: 12 DENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTD 71
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S ++ +ALE A++LE FP+T VDVF VL+
Sbjct: 72 TGILRVRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131
Query: 149 SGG 151
+ G
Sbjct: 132 ADG 134
>sp|Q4JB27|ECX1_SULAC Probable exosome complex exonuclease 1 OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=Saci_0610 PE=3 SV=1
Length = 243
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R + RP G + +A GSA E GNTKVI +V+GP+E + + + L
Sbjct: 15 LRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASL 74
Query: 96 NCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
T F+T R + + + S ++ +ALE I+L FP+T +D+F VL++
Sbjct: 75 RVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQA 131
>sp|A8WQQ5|EXOS4_CAEBR Putative exosome complex component RRP41 OS=Caenorhabditis briggsae
GN=exos-4.1 PE=3 SV=1
Length = 240
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q R R G +A GS Y E GNTKV+ +V+GP ESK + + + C
Sbjct: 10 RMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESKASKRLEDRCAIVC 69
Query: 98 NVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S TTF+ R D K + S +L KA E I+ E+FP++ +D+F V++ G
Sbjct: 70 QYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQGDG 127
>sp|Q9P7R3|MTR3_SCHPO Exosome complex component mtr3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mtr3 PE=3 SV=1
Length = 257
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVS 100
+R +CR + + G A GS+Y E K+ +V GPR SK + + +LNC
Sbjct: 29 TRDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGPRPSK-TFAFRSSAKLNCEFR 87
Query: 101 YTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ F+T +R Q + K +S M+ A+ +I+L +PK+++DV+ V+ES G
Sbjct: 88 LSPFSTSVRQGHVQTVEEKSYSQMIEAAISPSILLHLYPKSSIDVYIQVIESDG 141
>sp|A2BKC0|ECX1_HYPBU Probable exosome complex exonuclease 1 OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=Hbut_0571 PE=3 SV=1
Length = 255
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
+R D R Q RP G +++A GSA E+G T+VI +V+GPRE+ + + + +
Sbjct: 24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAII 83
Query: 96 NCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C F+T R + + + S ++ +ALE +I E +P+T +DV+ VL+S G
Sbjct: 84 RCRYHMAPFSTAERKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSDG 142
>sp|Q97BZ5|ECX1_THEVO Probable exosome complex exonuclease 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0310 PE=3 SV=1
Length = 248
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D LR D R F++ RP G +N A GSAY E+G K+IV V+GP+E+ K +
Sbjct: 15 DNLRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHA 74
Query: 94 RLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ + F+ R + G D + + S ++ +AL +I++E FP+ +DV+ VL++
Sbjct: 75 VVKARYNMAAFSVDERKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQA 133
>sp|Q5JIR6|ECX1_PYRKO Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1634 PE=3
SV=1
Length = 249
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 4/129 (3%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
RP D + R D R ++ RP G + +A GSAY E+G KV+ +V+GPRE
Sbjct: 4 RPEGLKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIH 63
Query: 85 -KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A++L FP+T +
Sbjct: 64 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALLLHMFPRTAI 123
Query: 141 DVFALVLES 149
DVF +L++
Sbjct: 124 DVFIEILQA 132
>sp|Q975G8|ECX1_SULTO Probable exosome complex exonuclease 1 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04430 PE=3 SV=2
Length = 243
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R + RP G + +A GSA E GNTKVI +V+GP+E + + + L
Sbjct: 15 LRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVL 74
Query: 96 NCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
T F+T R + + + S ++ +ALE I++E FP+T +DVF VL++
Sbjct: 75 RVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQA 131
>sp|Q9HIP2|ECX1_THEAC Probable exosome complex exonuclease 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1293 PE=3 SV=1
Length = 248
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D LR D R F++ RP + G +N A GSAY E+G K++V V+GP+E+ K +
Sbjct: 15 DNLRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHA 74
Query: 94 RLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ + F+ R + G D + + S ++ +AL +I++E FP+ +DV+ VL++
Sbjct: 75 IVKARYNMAAFSVDERKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQA 133
>sp|Q5RKV6|EXOS6_HUMAN Exosome complex component MTR3 OS=Homo sapiens GN=EXOSC6 PE=1 SV=1
Length = 272
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 16/144 (11%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP +D + P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAADEEEA-PGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALE 127
++ GRL C+ FA R G + ++ + L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGG 151
A+ L +P+ ++V AL+LE GG
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGG 155
>sp|Q8BTW3|EXOS6_MOUSE Exosome complex component MTR3 OS=Mus musculus GN=Exosc6 PE=1 SV=1
Length = 273
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 17/145 (11%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP ++ D P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAAEDDET-PAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPIR----GQGSDHKDFSSMLHKAL 126
++ S GRL C+ F+ R G G + ++ L +AL
Sbjct: 72 AEGGERGSGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGGGGEDRELGLALQEAL 131
Query: 127 EGAIILETFPKTTVDVFALVLESGG 151
E A+ L +P+ ++V AL+LE GG
Sbjct: 132 EPAVRLGRYPRAQLEVSALLLEDGG 156
>sp|Q17533|EXOS4_CAEEL Putative exosome complex component RRP41 OS=Caenorhabditis elegans
GN=exos-4.1 PE=2 SV=2
Length = 240
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q R R G +A GS Y E GNTKV+ +V+GP E K + + + C
Sbjct: 10 RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVC 69
Query: 98 NVSYTTFATPIRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S T F+ R + D K + S +L KA E I+ E FP++ +D+F V++ G
Sbjct: 70 QYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDG 127
>sp|Q9YC03|ECX1_AERPE Probable exosome complex exonuclease 1 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1447 PE=3 SV=1
Length = 246
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
D R D R RP + G +++A GSA EFG T+V+ +V+GPRE ++ + +
Sbjct: 14 DGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRA 73
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L F+T R + + + S ++ +ALE ++ E FP+T +DVF VL++
Sbjct: 74 ALRVRYHMAPFSTDERKSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQAD 133
Query: 151 G 151
G
Sbjct: 134 G 134
>sp|O29757|ECX1_ARCFU Probable exosome complex exonuclease 1 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0493 PE=1 SV=1
Length = 258
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS--- 90
VD LR D R F + RP + A GS Y E G KVI +VFGPRE +
Sbjct: 13 VDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSK 72
Query: 91 NIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
I R N++ F+ R + G D + + S + +A E I+ E FP++ +D+F VL
Sbjct: 73 AIIRYRYNMA--PFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVL 130
Query: 148 ES 149
++
Sbjct: 131 QA 132
>sp|Q28F19|EXOS6_XENTR Exosome complex component MTR3 OS=Xenopus tropicalis GN=exosc6 PE=2
SV=1
Length = 270
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGN--TKVIVSVFGPRESKKAMMYSNI-GRLNCN 98
RG + RP F R G ++ A GSAY E G+ TKV+ +V GPRE + GRL C+
Sbjct: 35 RGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLCD 94
Query: 99 VSYTTFAT--PIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ + F+ P G G + L ++LE A+ L+ +P+ V V+ LVLE G
Sbjct: 95 LRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEVIVWVLVLEDRG 152
>sp|Q9UXC2|ECX1_SULSO Probable exosome complex exonuclease 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0735 PE=1 SV=1
Length = 248
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D R + R G + +A GSA E GNTK I +V+GP+E + + +
Sbjct: 16 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 75
Query: 94 RLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
L T F+T R + + + S ++ +ALE A+++E FP+T +DVF +L++
Sbjct: 76 VLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 134
>sp|Q8TYC1|ECX1_METKA Probable exosome complex exonuclease 1 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0381 PE=3 SV=1
Length = 239
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKKAMMYSN 91
D LR D R + RP + G + A GSAY E G K++ +V+GPRE K
Sbjct: 12 DGLRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRA 71
Query: 92 IGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ R N++ F+ R + G D + + S + +ALE AI E +P+T +D+F VL+
Sbjct: 72 VVRFRYNMA--PFSVDERKRPGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVLQ 129
Query: 149 S 149
+
Sbjct: 130 A 130
>sp|Q8PTT8|ECX1_METMA Probable exosome complex exonuclease 1 OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2623 PE=3 SV=1
Length = 493
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES---KKAMMYSN 91
D LR D R + RP G ++ A GS Y E+G K++V VFGPRE+ + S
Sbjct: 14 DGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSA 73
Query: 92 IGRLNCNVSYTTFATPIR-GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ R N++ + R G + S + +A E I+ E FPKT +D+F VL++
Sbjct: 74 VIRYRYNMASFSVEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQA 132
>sp|A3MUP1|ECX1_PYRCJ Probable exosome complex exonuclease 1 OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=Pcal_0933 PE=3 SV=1
Length = 246
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R Q R + G V++A GSA +G T + +V+GPRE + + + G +
Sbjct: 13 LRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72
Query: 96 NCNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
F+T + + S +L +ALE A++LE +P++ +DVF +L++ G
Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADG 132
>sp|Q7YRA3|EXOS4_BOVIN Exosome complex component RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3
Length = 245
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>sp|Q9NPD3|EXOS4_HUMAN Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3
Length = 245
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>sp|Q8ZVM9|ECX1_PYRAE Probable exosome complex exonuclease 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=PAE2207 PE=3 SV=1
Length = 246
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
+R D R Q R G V++A GSA +G T + +V+GPRE + + + G +
Sbjct: 13 VRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72
Query: 96 NCNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
F+T + + S +L +ALE AI+LE +P++ +DVF +L++ G
Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQADG 132
>sp|A1RST0|ECX1_PYRIL Probable exosome complex exonuclease 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=Pisl_0836 PE=3 SV=1
Length = 246
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-K 85
P+F + +R D R Q R G V++A GSA +G T + +V+GPRE +
Sbjct: 7 PLFQ----NGVRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPR 62
Query: 86 AMMYSNIGRLNCNVSYTTFA--------TPIRGQGSDHKDFSSMLHKALEGAIILETFPK 137
+ + G + F+ TP R + + S +L +ALE A++LE +P+
Sbjct: 63 HLSLPDRGVMRVRYHMAPFSTKDERKSPTPTRRE----IEISKILREALEPAVVLEQYPR 118
Query: 138 TTVDVFALVLESGG 151
+ +DVF +L++ G
Sbjct: 119 SRIDVFIEILQADG 132
>sp|B1Y978|ECX1_PYRNV Probable exosome complex exonuclease 1 OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1381 PE=3
SV=1
Length = 246
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-K 85
P+ G +R D R Q R G +++A GSA +G T + +V+GPRE +
Sbjct: 7 PLLQGG----VRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPR 62
Query: 86 AMMYSNIGRLNCNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVD 141
+ + G + F+T + + S +L +ALE A++LE +P++ +D
Sbjct: 63 HLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRID 122
Query: 142 VFALVLESGG 151
VF +L++ G
Sbjct: 123 VFIEILQADG 132
>sp|Q921I9|EXOS4_MOUSE Exosome complex component RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3
Length = 245
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPIRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
>sp|A4WM67|ECX1_PYRAR Probable exosome complex exonuclease 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=Pars_1937 PE=3 SV=1
Length = 246
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
+R D R Q R G V++A GSA +G T + +V+GPRE + + + G +
Sbjct: 13 VRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72
Query: 96 NCNVSYTTFATPIRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
F+T + + S +L +ALE A++LE +P++ +DVF ++++ G
Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQADG 132
>sp|P46948|RRP41_YEAST Exosome complex component SKI6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SKI6 PE=1 SV=1
Length = 246
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 15/126 (11%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
LR D R +++ R F + ++N+ A GS+Y E GN K+I V GP+E + K+ M ++
Sbjct: 12 LRLDGRRWNELRR--FES-SINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTS 68
Query: 92 IGRLNCNVSYTTFATPIRGQGSDHKDFSSMLH------KALEGAIILETFPKTTVDVFAL 145
LN +V+ T F+ R + S HK+ +L + E ++L +P+T +D+
Sbjct: 69 KALLNVSVNITKFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 127
Query: 146 VLESGG 151
VLE G
Sbjct: 128 VLEQDG 133
>sp|O42872|RRP41_SCHPO Exosome complex component ski6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ski6 PE=2 SV=1
Length = 242
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 29 FSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKK 85
F ++ LR D R + + R R G S +GSA+ E GNTKV+ V GP E K
Sbjct: 4 FEILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSK 63
Query: 86 AMMYSNIGRLNCNV-SYTTFATPIRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVF 143
A + N+ S++T R + + L E I E +P++ + V+
Sbjct: 64 ARADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVY 123
Query: 144 ALVLESGG 151
VL+ G
Sbjct: 124 LHVLQDDG 131
>sp|Q8U0M0|ECX2_PYRFU Probable exosome complex exonuclease 2 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1567 PE=3 SV=1
Length = 277
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS------N 91
R D RGF RP G + A GSA + GNT+V+V + KA + N
Sbjct: 24 RIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGI-------KATLGEPFPDTPN 76
Query: 92 IGRLNCNVSYTTFATP 107
+G + NV A+P
Sbjct: 77 MGVMTTNVELVPLASP 92
>sp|B1HR13|PNP_LYSSC Polyribonucleotide nucleotidyltransferase OS=Lysinibacillus
sphaericus (strain C3-41) GN=pnp PE=3 SV=1
Length = 704
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 18/130 (13%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPR 81
D +RPD R + RP TG + GS G T+ I+ G
Sbjct: 312 DKIRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRGQTQALSICTLGALGDVQIIDGLGVE 371
Query: 82 ESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
ESK+ M + N + + + PIRG G ++ +ALE I E+ T+
Sbjct: 372 ESKRFMHHYNFPQFSVGET-----GPIRGPGRREIGHGALGERALEAVIPDESVFPYTIR 426
Query: 142 VFALVLESGG 151
+ VLES G
Sbjct: 427 CVSEVLESNG 436
>sp|Q11U61|PNP_CYTH3 Polyribonucleotide nucleotidyltransferase OS=Cytophaga hutchinsonii
(strain ATCC 33406 / NCIMB 9469) GN=pnp PE=3 SV=1
Length = 717
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV-FGPRESKKAM---MYSNIG 93
R D R Q RP + G + SA GSA G T+ + +V FG R ++ + M+S
Sbjct: 322 RLDGRSLEQIRPIWSEVGYLPSAHGSAIFTRGETQSLTTVTFGTRLDEQMIDSAMFSGNN 381
Query: 94 RLNCNVSYTTFAT----PIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+L + ++ F+T P RG G ++ ++A++ + E T+ + + +LES
Sbjct: 382 KLMLHYNFPGFSTGEVKPNRGPGRREVGHGNLAYRAIKKVMPPEIENPYTIRIVSDILES 441
Query: 150 GG 151
G
Sbjct: 442 NG 443
>sp|Q3IJI0|RNPH_PSEHT Ribonuclease PH OS=Pseudoalteromonas haloplanktis (strain TAC 125)
GN=rph PE=3 SV=1
Length = 237
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R +Q RP F A GS EFGNTKV+ + + M G +N
Sbjct: 1 MRPSERTANQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60
Query: 97 CNVSYTTFATPIRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ +AL A+ L+ + T+ + V++
Sbjct: 61 AEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120
Query: 149 SGG 151
+ G
Sbjct: 121 ADG 123
>sp|Q84T68|EXOS5_ORYSJ Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp.
japonica GN=RRP46 PE=1 SV=2
Length = 238
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + G
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRK------GENPE 58
Query: 98 NVSYTTFATPIRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
S P+ GQ G K++ L + L+ +L P TT V V+ + G
Sbjct: 59 KASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDG 113
>sp|Q9V118|ECX2_PYRAB Probable exosome complex exonuclease 2 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06110 PE=1 SV=1
Length = 274
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMY-----SNI 92
R D RGF RP G + A GSA + G+T+V+V + K ++ N+
Sbjct: 24 RIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGI------KTSLGEPFPDTPNM 77
Query: 93 GRLNCNVSYTTFATP 107
G + NV A+P
Sbjct: 78 GVMTTNVELVPLASP 92
>sp|O59224|ECX2_PYRHO Probable exosome complex exonuclease 2 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1548 PE=3 SV=1
Length = 274
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS------N 91
R D RGF RP G + A GSA + G+T+V+V + K + N
Sbjct: 24 RIDDRGFEDYRPIEIEVGIIEKAEGSALVKLGSTQVLVGI-------KTTLGEPFPDTPN 76
Query: 92 IGRLNCNVSYTTFATP 107
+G + NV A+P
Sbjct: 77 MGVMTTNVELVPLASP 92
>sp|B0CAB9|RNPH_ACAM1 Ribonuclease PH OS=Acaryochloris marina (strain MBIC 11017) GN=rph
PE=3 SV=1
Length = 239
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R Q RP F + A+GS AE G TKV+ +V + + + G L
Sbjct: 3 WQRPDGRQPDQLRPIRFHREYTHFAAGSVLAECGQTKVLCTVSVQPGVPRFLEDTGQGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+TP R + K + ++ ++L A+ L+ + T+ V A VL++
Sbjct: 63 TAEYRMLPGSTPERQRRELMKLSGRTQEIQRLIGRSLRAALDLQALGERTLVVDADVLQA 122
>sp|B8HPC6|RNPH_CYAP4 Ribonuclease PH OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141)
GN=rph PE=3 SV=1
Length = 239
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R HQ RP F G A+GS G T+V+ +V K + G L
Sbjct: 3 WQRPDGRQSHQLRPISFERGFTRFAAGSVLTRCGQTQVLCNVTVRPGVPKFLEGRGQGWL 62
Query: 96 NCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
ATP R + K + ++ ++L A+ + + T+ V A VL++
Sbjct: 63 TAEYRMLPAATPQRQEREMLKLSGRTQEIQRLIGRSLRAALDFDLLGERTLVVDADVLQA 122
>sp|C4LJY5|RNPH_CORK4 Ribonuclease PH OS=Corynebacterium kroppenstedtii (strain DSM 44385
/ CCUG 35717) GN=rph PE=3 SV=1
Length = 254
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D++R D R + RP G + +GS EFGNT+V+ + + S G
Sbjct: 3 DFVRADGRALDEMRPVRIVRGFTTNPAGSVLVEFGNTRVMCTASVEDRVPRFKKDSGEGW 62
Query: 95 LNCNVSYTTFATP-------IRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
L S AT +RG +G H + S ++ ++L AI L+ + T+ +
Sbjct: 63 LTAEYSMLPSATAERMPRESMRGKVKGRTH-EISRLVGRSLRAAIDLKALGENTIALDCD 121
Query: 146 VLESGG 151
VL++ G
Sbjct: 122 VLQADG 127
>sp|Q8TYC2|ECX2_METKA Probable exosome complex exonuclease 2 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0380 PE=3 SV=1
Length = 267
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
R D R F + RP R G ++ A+GSA GNT+++V V
Sbjct: 23 RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGV 62
>sp|P50849|PNP_BACSU Polyribonucleotide nucleotidyltransferase OS=Bacillus subtilis
(strain 168) GN=pnp PE=1 SV=3
Length = 705
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>sp|A8FDD7|PNP_BACP2 Polyribonucleotide nucleotidyltransferase OS=Bacillus pumilus
(strain SAFR-032) GN=pnp PE=3 SV=1
Length = 705
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPRES 83
+RPD RG Q RP G + GS G T+ I+ G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
K+ M + N + + + P+RG G ++ +ALE I E TV +
Sbjct: 375 KRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLV 429
Query: 144 ALVLESGG 151
+ VLES G
Sbjct: 430 SEVLESNG 437
>sp|B9MR54|PNP_CALBD Polyribonucleotide nucleotidyltransferase OS=Caldicellulosiruptor
bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=pnp
PE=3 SV=1
Length = 701
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEIGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+ M + N + T + P+RG G ++ +ALE I E T+ + +
Sbjct: 373 RYMHHYNFPPFS-----TGESKPVRGPGRREIGHGALAERALEPVIPSEDEFPYTIRLVS 427
Query: 145 LVLESGG 151
VL S G
Sbjct: 428 EVLTSNG 434
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,524,575
Number of Sequences: 539616
Number of extensions: 2094303
Number of successful extensions: 5862
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 218
Number of HSP's that attempted gapping in prelim test: 5507
Number of HSP's gapped (non-prelim): 489
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)